BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62] (471 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|291618007|ref|YP_003520749.1| SbcB [Pantoea ananatis LMG 20103] gi|291153037|gb|ADD77621.1| SbcB [Pantoea ananatis LMG 20103] Length = 473 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 246/467 (52%), Positives = 325/467 (69%), Gaps = 1/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +DYETFG + DRPAQFAG+R D + + EVF+C+P DDYLP PEAV ITGI Sbjct: 7 TFLFHDYETFGTSPSRDRPAQFAGLRTDSNFNPVGEPEVFYCRPPDDYLPQPEAVMITGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A GV EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y WSW Sbjct: 67 TPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWSWQ 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+ H NAHDA +DVYA Sbjct: 127 NGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 186 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 TLA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ + P+ Sbjct: 187 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 AWHP ++++I +L+GDM LD+ L +RL+T EL +P+K VH+NKCP+L Sbjct: 247 AWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHINKCPVL 306 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362 P + + E R GID K CL+NL LRQ +R++ AI+ + S DVD+QLYD Sbjct: 307 APANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSDDVDTQLYD 366 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 GFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q WL+ Sbjct: 367 GFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAEQQRWLQ 426 Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 HR+++L +++ + +L+SL+ ++ D+ K + ALY Y Q ++ Sbjct: 427 HRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELVS 473 >gi|294635527|ref|ZP_06714007.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685] gi|291091096|gb|EFE23657.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685] Length = 473 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 259/472 (54%), Positives = 332/472 (70%), Gaps = 4/472 (0%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M+ F+ +DYETFG+ ALDRPAQFAGVR D + IE +VF+C+PADDYLP PEA Sbjct: 1 MSKAAPSFLFHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPEA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V ITGITPQ AL G+ EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Sbjct: 61 VMITGITPQTALAQGICEAEFAERIHQLFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDP 120 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y +SW NGNSRWDLLDV+R YA P GI WP + G SFKL+ L+ ANGIEH NAHDA Sbjct: 121 YAYSWQNGNSRWDLLDVLRTCYALRPQGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDA 180 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 ADVYAT+ + ++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT Sbjct: 181 MADVYATIEMAKRAKQAQPRLFDYLFQLRNKNRVAQLIDIAEMTPLVHVSGMFGALRGNT 240 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 +L+AP+AWHP K++VI C+L+GD+ LDS L +RL+T EL PVPIK VH+ Sbjct: 241 SLVAPLAWHPDNKNAVIVCDLAGDITPLLTLDSETLRERLYTPRSELGDAAPVPIKLVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDV 356 NKCP+L P E+ ER G+D +RCL+NL LR +RD+ +++ P + DV Sbjct: 301 NKCPVLAPEKTLLAENAERLGLDRQRCLDNLAQLRHHHAVRDKVVSLFADAPPFPRASDV 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 DSQLYDGFF+D DRQ M I T P+ L L+L F+D R+ L FRYRARN+P TL E E Sbjct: 361 DSQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFNDERITPLLFRYRARNYPATLDEAE 420 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +Q W +HR++MLT R++EY L+ L Y+ + L+ AL++Y + ++ Sbjct: 421 RQRWQQHRREMLTAERVQEYLQTLEMLYNRYEDQPQRLTLLRALFDYARELV 472 >gi|269138522|ref|YP_003295222.1| exonuclease I [Edwardsiella tarda EIB202] gi|267984182|gb|ACY84011.1| exonuclease I [Edwardsiella tarda EIB202] Length = 477 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 255/468 (54%), Positives = 328/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+ ADDYLP P+AV IT Sbjct: 9 QNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL G EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +S Sbjct: 69 GITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+R YA +GI WP + G SFKL+ L+ ANGIEH NAHDA ADV Sbjct: 129 WQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LIA Sbjct: 189 YATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP K++VI C+L D+ LD+ L +RL+T EL PVPIK VH+NKCP Sbjct: 249 PLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L P ++ R G+D +RC +NL LL+Q + +RD+ +++ P S DVDSQL Sbjct: 309 VLAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DRQ M I T P+ L L+L FSD R+ L FRYRARN+P TL E E++ W Sbjct: 369 YDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR+ MLT R+++Y L+ L Y+ K L+ AL++Y + ++ Sbjct: 429 QQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 476 >gi|157371451|ref|YP_001479440.1| exonuclease I [Serratia proteamaculans 568] gi|157323215|gb|ABV42312.1| Exodeoxyribonuclease I [Serratia proteamaculans 568] Length = 475 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 258/467 (55%), Positives = 340/467 (72%), Gaps = 2/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F I+DYETFG ++DRPAQFAGVR D + IE V +C PADDYLPDPEAV ITGI Sbjct: 8 TFYIHDYETFGISPSMDRPAQFAGVRTDMDFNIIEEPLVIYCTPADDYLPDPEAVMITGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ AL GV EAEF+R+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW Sbjct: 68 TPQLALAKGVNEAEFTRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDVMRA YA PDGI WP +DG SF+L+ L ANG+EH +AHDA +DVYA Sbjct: 128 NGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ L+++ +P+LF++L +RNK++L LIDI MTPLVHVSGMFGA+R NT+ ++P+ Sbjct: 188 TIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPL 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP K++VI C+L+GDM L + +L +RL+T ++L G PVPIK VH+NKCP+ Sbjct: 248 AWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAPGQSPVPIKLVHINKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361 L P E+ ER GID + CL+NL LLRQ +R++ A++ S DVD++LY Sbjct: 308 LAPAKTLLPENAERLGIDRQACLQNLQLLRQHPQVREKVVALFADAEPFKGSDDVDARLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF+D D+ M I +T P+ L L+L F+D RL EL FR+RARN+P+TL + E++ WL Sbjct: 368 DGFFSDADKATMKIIQQTKPQNLPALDLTFNDGRLKELLFRFRARNYPNTLDDTEQRRWL 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR++ L+ R++ Y +L+SL ++GD+ K L+ AL+EY + ++ Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDQEKTALLKALFEYGKELV 474 >gi|238755403|ref|ZP_04616744.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473] gi|238706340|gb|EEP98716.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473] Length = 476 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 257/470 (54%), Positives = 338/470 (71%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 SPTFYVHDYETFGQHPALDRPAQFAGVRTDLDFNIIEEPLVVYCSPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL G+ EAEFS++IHQ FSV TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQTALAKGINEAEFSQQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 127 WQNGNSRWDLLDVMRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+AL L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 HATIALAKLVKQAQPRLFDYLYQHRSKHKISALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GD+ +LD+ L +RL+T D+L VPIK VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDISPLLELDAETLRERLYTRRDKLSADQAAVPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER ID +RCL+NL +LRQ +R++ ++ + P ++S DVD+Q Sbjct: 307 PVLAPAKTLLAENAERLAIDRQRCLQNLQVLRQNPQIREKVVTLFAESPPFAASSDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF D DR M I +TAP+ L L+L F D RL EL FR+RARN+P+TL + E++ Sbjct: 367 LYDGFFGDADRATMKIIQQTAPQNLPALDLSFQDPRLTELLFRFRARNYPNTLDDSEQRR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W HR++ML+ R++EY +L+ Y+ D+ K L+ LY+Y + ++ Sbjct: 427 WQNHRREMLSPERVQEYVQQLEQFYNLYESDKEKLALLKDLYDYARELVS 476 >gi|304558543|gb|ADM41207.1| Exodeoxyribonuclease I [Edwardsiella tarda FL6-60] Length = 475 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 255/468 (54%), Positives = 328/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+ ADDYLP P+AV IT Sbjct: 7 QNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL G EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +S Sbjct: 67 GITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+R YA +GI WP + G SFKL+ L+ ANGIEH NAHDA ADV Sbjct: 127 WQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LIA Sbjct: 187 YATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP K++VI C+L D+ LD+ L +RL+T EL PVPIK VH+NKCP Sbjct: 247 PLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L P ++ R G+D +RC +NL LL+Q + +RD+ +++ P S DVDSQL Sbjct: 307 VLAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DRQ M I T P+ L L+L FSD R+ L FRYRARN+P TL E E++ W Sbjct: 367 YDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR+ MLT R+++Y L+ L Y+ K L+ AL++Y + ++ Sbjct: 427 QQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 474 >gi|270262717|ref|ZP_06190988.1| exonuclease I [Serratia odorifera 4Rx13] gi|270043401|gb|EFA16494.1| exonuclease I [Serratia odorifera 4Rx13] Length = 475 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 253/467 (54%), Positives = 340/467 (72%), Gaps = 2/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F I+DYETFG+ ++DRPAQFAGVR D + IE V +CKPADDYLPDPEAV ITGI Sbjct: 8 TFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPEAVMITGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ AL G+ EA+F+R IHQ FSVP TCI+GYNNIRFDD SRNIFYR+FYD Y +SW Sbjct: 68 TPQLALAKGINEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYDPYAYSWQ 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+EH +AHDA +DVYA Sbjct: 128 NGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ L+++ +P+LF++L +RNK++L LIDI MTPLVHVSGMFGA+R NT+ ++P+ Sbjct: 188 TIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPL 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP K++VI C+L+GDM L + +L +RL+T ++L PVPIK VH+NKCP+ Sbjct: 248 AWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLVHINKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361 L P E+ ER GID + CL+NL LLRQ +R++ A++ + DVD++LY Sbjct: 308 LAPAKTLLPENAERLGIDRQACLQNLQLLRQNPQVREKVVALFADAEPFKAVDDVDARLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF+D D+ M I +T P+ L L+L FSD R+ EL FR+RARN+P+TL + E++ WL Sbjct: 368 DGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTLDDAEQRRWL 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR++ L+ R++ Y +L+SL ++GD+ K L+ AL+EY + ++ Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDKEKTALLKALFEYGKELV 474 >gi|308187438|ref|YP_003931569.1| exodeoxyribonuclease I [Pantoea vagans C9-1] gi|308057948|gb|ADO10120.1| exodeoxyribonuclease I [Pantoea vagans C9-1] Length = 475 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 246/469 (52%), Positives = 331/469 (70%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG + DRPAQFAG+R D ++ + EVF+C+P DDYLP PEAV IT Sbjct: 7 QPTFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A+ GV+EAEF+ RIH+ F+ TC++GYNN+RFDD +RNIFYRNFYD Y W+ Sbjct: 67 GITPQIAMSRGVIEAEFAERIHKLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWA 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA PDGI WP ++G SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQNGNSRWDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YATLA+ L++EK+PKLF++L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ I Sbjct: 187 YATLAMAKLVKEKQPKLFDFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIV 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I +L+GDM LD+ L +RL+T ++L L VP+K VH+NKCP Sbjct: 247 PLAWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L P + E R GID + CL NL LLRQQ ++R++ ++ + + S DVD+QL Sbjct: 307 VLAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSDDVDTQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q W Sbjct: 367 YDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR+++L R++ + +L+ L+ ++ D K G + ALY Y Q ++ Sbjct: 427 LQHRREVLNSDRVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELVS 475 >gi|238919203|ref|YP_002932718.1| exonuclease I [Edwardsiella ictaluri 93-146] gi|238868772|gb|ACR68483.1| exodeoxyribonuclease I [Edwardsiella ictaluri 93-146] Length = 473 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 255/472 (54%), Positives = 332/472 (70%), Gaps = 4/472 (0%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M+ F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+PADDYLP P+A Sbjct: 1 MSKAAPTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPDA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V ITGITPQ AL GV EAEF+ RIH+ FSVP TC++GYNNIRFDD SRN+FYRNF+D Sbjct: 61 VMITGITPQTALAQGVCEAEFAGRIHRLFSVPGTCVLGYNNIRFDDEVSRNLFYRNFFDP 120 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y +SW NGNSRWDLLDV+R YA P+GI WP + G SFKL+ L+ ANGIEH NAHDA Sbjct: 121 YAYSWQNGNSRWDLLDVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDA 180 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 ADVYAT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT Sbjct: 181 MADVYATIALAQRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNT 240 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 +LIAP+AWHP K++VI C+L D+ LD+ L +RL+T +EL PVPIK VH+ Sbjct: 241 SLIAPLAWHPENKNAVIVCDLDSDITPLLTLDADALRERLYTPRNELGDAAPVPIKLVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDV 356 NKCP+L P ++ R G+D +RC +NL LL+Q + +RD+ +++ P S DV Sbjct: 301 NKCPVLAPEKTLLADNAVRLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDV 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 DSQLYDGFF+D DRQ M I T P+ L L+L F+DRR+ L FRYRARN+P TL E E Sbjct: 361 DSQLYDGFFSDADRQAMQIIRATLPQNLPALDLRFNDRRITPLLFRYRARNYPATLDESE 420 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 + W +HR+ MLT +++Y L+ L Y+ + L+ AL++Y + ++ Sbjct: 421 MRRWQQHRQSMLTPQHVQDYLQTLEMLYNRYEDQPQRLTLLQALFDYARELV 472 >gi|117619062|ref|YP_856430.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560469|gb|ABK37417.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 564 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 212/466 (45%), Positives = 309/466 (66%), Gaps = 2/466 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F +DYETFG A DRPAQFAG+R D + I V +CKP DYLP+PEA ITG Sbjct: 100 PTFYFHDYETFGISPAKDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYLPEPEACLITG 159 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQKA++DG+ EA+F R+IH+ F+ P TC++GYN+IRFDD +R YRNFYD Y ++W Sbjct: 160 ITPQKAMKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAW 219 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD+LD++RA YA P+GI+W ++G SFKL+ L +ANG+ H NAHDA +DV Sbjct: 220 QNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFKLEKLTVANGVAHANAHDALSDVL 279 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + L+++ +PKLF YL+D RNKN+++ LID+ M PLVHVSGMF + + ++P Sbjct: 280 ATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSP 339 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+ D +L S ++ +RL+T +EL L +P+K VH+NKCP+ Sbjct: 340 LAWHPSNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCPV 399 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361 L P E ++ GID ++C ++L LLR +R++ ++N+ + ++ D D+QLY Sbjct: 400 LAPAATLTAERADQLGIDREQCRKSLDLLRAHPEVREKLVEVFNQEFAGNNDGDPDTQLY 459 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W Sbjct: 460 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWR 519 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 H R+ +Y +L+ L+ + +G+E ++ +LY YL+ + Sbjct: 520 LHCSDYF-SRRLPDYVPRLEELAEQNQGNERNFAILKSLYHYLENL 564 >gi|260598502|ref|YP_003211073.1| exonuclease I [Cronobacter turicensis z3032] gi|260217679|emb|CBA32024.1| Exodeoxyribonuclease I [Cronobacter turicensis z3032] Length = 480 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 246/468 (52%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG+ +LDRPAQFA +R D + I +VF+CKPADDYLP PEAV IT Sbjct: 12 QPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLIT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G EA+F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 72 GITPQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N NSRWDLLDVMRA YA P+GI WP DG SF+L+ L +ANGIEH NAHDA ADV Sbjct: 132 WQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADV 191 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P++F+YLY YR+K +L L+DI M PLVHVSGMFGA R NT+ IA Sbjct: 192 YATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLVDIVQMKPLVHVSGMFGAWRGNTSWIA 251 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +L++ L +RL+T L PVP+K VHLNKCP Sbjct: 252 PIAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALNDASPVPVKLVHLNKCP 311 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E ER GID +RCL+NL +LR +R++ A++ + P + +VD+QL Sbjct: 312 VLAQANTLRPEDAERLGIDRQRCLDNLKVLRDSPQVREKLVALFAEAPPFPPTDNVDAQL 371 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TLSE+E++ W Sbjct: 372 YDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIGKLLFNYRARNFPGTLSEQEQERW 431 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L HR+ + T ++ Y +L+ L +Y+ D+ K L+ ALY+Y Q ++ Sbjct: 432 LAHRRDVFTPEFLQTYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 479 >gi|188533503|ref|YP_001907300.1| exonuclease I [Erwinia tasmaniensis Et1/99] gi|188028545|emb|CAO96407.1| Exodeoxyribonuclease I [Erwinia tasmaniensis Et1/99] Length = 475 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 249/469 (53%), Positives = 341/469 (72%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV +T Sbjct: 7 QPTFLFHDYETFGTSPSLDRPAQFAALRTDMDFNPIGEPEVFYCRPADDYLPQPEAVMVT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ EAEF++RIHQ FS PNTC++GYNN+RFDD SRN+FYRNFYD Y WS Sbjct: 67 GITPQIARARGLNEAEFTQRIHQLFSAPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGIVWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ ++EK+P+L+++LY +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IA Sbjct: 187 YATIAMAKRVKEKQPRLYDFLYAHRNKQKIGALIDIPQMKPLVHISGMFGAARGNTSWIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I C+L GDM +LD+ L +RL+T +EL G PVP+K VH+NKCP Sbjct: 247 PLAWHPDNRNALITCDLGGDMAPLLELDADALRERLYTRREELNGASPVPLKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 ++ P + + E ER GID +RCL+NLTLLRQ +R++ ++ + S+DVD+QL Sbjct: 307 VVAPANTLRPEDAERIGIDRQRCLDNLTLLRQHPEVREKVVTLFAEAQPFIPSEDVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q W Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDAEQQSW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR+++L R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++ Sbjct: 427 LQHRREVLNPERVQGYVQELEMLFNQYEGDKTRQEQLKALFAYMQELVS 475 >gi|156933393|ref|YP_001437309.1| exonuclease I [Cronobacter sakazakii ATCC BAA-894] gi|156531647|gb|ABU76473.1| hypothetical protein ESA_01206 [Cronobacter sakazakii ATCC BAA-894] Length = 491 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 246/468 (52%), Positives = 324/468 (69%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG+ +LDRPAQFA +R D + I +VF+CKPADDYLP PEAV IT Sbjct: 23 QPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLIT 82 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G EAEF+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 83 GITPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 142 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N NSRWDLLDVMRA YA P+GI WP DG SF+L+ L +ANGIEH NAHDA ADV Sbjct: 143 WQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADV 202 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P++F+YLY YR+K +L LID M PLVHVSGMFGA R NT+ IA Sbjct: 203 YATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIA 262 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP +++VI +L+GD+ +L++ L +RL+T L VP+K VHLNKCP Sbjct: 263 PVAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCP 322 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E ER GID + CL NL +LR +R++ A++ P + +VD+QL Sbjct: 323 VLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQL 382 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TLSE+E+ W Sbjct: 383 YDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQARW 442 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L HR+ + T ++ Y +L+ L +Y+ D+ K L+ ALY+Y Q ++ Sbjct: 443 LAHRRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 490 >gi|295098241|emb|CBK87331.1| Exodeoxyribonuclease I subunit C [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 478 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 244/467 (52%), Positives = 332/467 (71%), Gaps = 1/467 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TG Sbjct: 12 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTG 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW Sbjct: 72 ITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 131 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N NSRWDLLD+MRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY Sbjct: 132 QNRNSRWDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 191 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP Sbjct: 192 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 251 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+GD+ +LDS L +RL+T + L L VP+K VH+NKCP+ Sbjct: 252 LAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKEALGDLPAVPVKLVHINKCPV 311 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361 L + + E +R GI+ + CL+NL +LR +R++ AI+ + S++VD+QLY Sbjct: 312 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 371 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL Sbjct: 372 NGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 431 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR+ + T + Y +L+ L G+Y+G+ K+ L+ AL++Y Q ++ Sbjct: 432 QHRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 478 >gi|284919774|emb|CAX65551.1| putative exonuclease I [Enterobacter hormaechei] Length = 502 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 242/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TG Sbjct: 36 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTG 95 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW Sbjct: 96 ITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 155 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N NSRWDLLD+MR YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY Sbjct: 156 QNRNSRWDLLDIMRVCYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 215 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP Sbjct: 216 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 275 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+GD+ +L+S L +RL+T + L L VP+K VH+NKCP+ Sbjct: 276 LAWHPDNRNAVIMVDLAGDISPLLELNSDTLRERLYTPKEALGDLPAVPVKLVHINKCPV 335 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361 L + + E +R GI+ + CL+NL +LR +R++ AI+ + S++VD+QLY Sbjct: 336 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 395 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL Sbjct: 396 NGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 455 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR+ + T + Y +L+ L G+Y+G+ K+ L+ AL++Y Q ++ Sbjct: 456 QHRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 502 >gi|304397387|ref|ZP_07379265.1| Exodeoxyribonuclease I [Pantoea sp. aB] gi|304355005|gb|EFM19374.1| Exodeoxyribonuclease I [Pantoea sp. aB] Length = 475 Score = 413 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 246/469 (52%), Positives = 331/469 (70%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG + DRPAQFAG+R D ++ + +VF+C+P DDYLP PEAV IT Sbjct: 7 QPTFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPDVFYCRPPDDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A+ G++EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y W+ Sbjct: 67 GITPQIAMSRGMIEAEFAERIHTLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWA 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA PDGI WP ++G SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQNGNSRWDLLDVMRACYALRPDGIIWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YATLA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ I Sbjct: 187 YATLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIV 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I +L+GDM LD+ L +RL+T ++L L PVP+K VH+NKCP Sbjct: 247 PLAWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPPVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L P + E R GID + CL NL LLRQQ ++R++ ++ + + S DVD+QL Sbjct: 307 VLAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSDDVDTQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q W Sbjct: 367 YDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR+++L R++ + +L+ L+ ++ D K G + ALY Y Q ++ Sbjct: 427 LQHRREVLNAERVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELVS 475 >gi|227111961|ref|ZP_03825617.1| exonuclease I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 475 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 256/469 (54%), Positives = 331/469 (70%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLP+PEAV IT Sbjct: 6 QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPEAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 66 GITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DV Sbjct: 126 WQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGISHEQAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKC Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSAALRERLYTRRDALEADQSAVPLKLVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359 P+L P + + E ER GID +RCL+NL LLR ++R++ ++ + ++S DVD + Sbjct: 306 PVLAPANTLRPEDAERLGIDRQRCLDNLALLRSNASVREKVVELFAEAPAFTASDDVDLR 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF DR M I TAP+ L L+L F+D RL L FRYRARNFP TL ++E+Q Sbjct: 366 LYDGFFGYADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL+HR+ + T R+++Y ++L +L +++ D+ K + ALY Y Q ++ Sbjct: 426 WLQHRRAVFTPERLQDYLSELSNLYQQHEDDKEKMAQLKALYAYAQELV 474 >gi|322832303|ref|YP_004212330.1| Exodeoxyribonuclease I [Rahnella sp. Y9602] gi|321167504|gb|ADW73203.1| Exodeoxyribonuclease I [Rahnella sp. Y9602] Length = 475 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 253/469 (53%), Positives = 340/469 (72%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYETFG++ ALDRPAQFAGVR D + IE V +C+P+DDYLP+PEAV IT Sbjct: 6 QKTFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPEAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL G++EAEF+ +IH+ FSVP TCI+GYNNIRFDD SRNI YRNF+D Y +S Sbjct: 66 GITPQVALERGLIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFHDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF +L ++R+K++L LIDI M PLVHVSGMFGA+R NTA +A Sbjct: 186 YATIAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGNTAWVA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM DL+ ++ +RL++ + L+ G P+P+K VH+NKC Sbjct: 246 PLAWHPENKNAVIMCDLAGDMSTLLDLNPDEMRERLYSRREALQAGQSPLPVKLVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER GID +RCLENL LLRQ +R++ ++ + + S DVD++ Sbjct: 306 PVLAPAKTLLPENAERLGIDRQRCLENLQLLRQNPQVREKVVTMFAEAEPFTPSDDVDAR 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+D DR M I+ T PE L L+L F+D R+ L FR+RARN+P TL++ E++ Sbjct: 366 LYDGFFSDADRAAMRIIVETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTDAEQKR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W+ HR++ LT R++ Y +L+SL ++GD K L+ AL+EY + ++ Sbjct: 426 WMLHRQEKLTDERVQAYILELESLYNLHEGDVEKMALLKALFEYGKKLV 474 >gi|310768007|gb|ADP12957.1| exonuclease I [Erwinia sp. Ejp617] Length = 475 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 249/469 (53%), Positives = 339/469 (72%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV IT Sbjct: 7 QSTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD SR++FYRNFYD Y WS Sbjct: 67 GITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRHLFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ ++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IA Sbjct: 187 YATIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I C+L GDM +LD+ L RL+T +EL G PVP+K VH+NKCP Sbjct: 247 PLAWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 ++ P + + E ER GID +RCL+NL LLRQ +R++ ++ + S DVD+QL Sbjct: 307 VVAPANTLRAEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFADAQPFTPSDDVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q W Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR++ML R++ Y +L+ L +Y+GD ++ + AL+ Y+Q ++ Sbjct: 427 LQHRRQMLNPERVQGYVQELEILFNQYEGDRARQEQLKALFAYMQELVS 475 >gi|292488688|ref|YP_003531575.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430] gi|292899843|ref|YP_003539212.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946] gi|291199691|emb|CBJ46811.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946] gi|291554122|emb|CBA21287.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430] Length = 475 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 247/469 (52%), Positives = 338/469 (72%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV IT Sbjct: 7 QPTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A + G+ EAEF+ RIH FS NTC++GYNN+RFDD SRN+FYRNFYD Y WS Sbjct: 67 GITPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R N + IA Sbjct: 187 YATIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I C+L DM +LD+ L RL+T DEL G PVP+K VH+NKCP Sbjct: 247 PLAWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 ++ P + + E ER GID +RC +NL LLRQ +R++ ++ + P + S DVDSQ+ Sbjct: 307 VVAPANTLRPEDAERIGIDRQRCRDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQI 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL +KE+Q W Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR++M + R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++ Sbjct: 427 LQHRRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELVS 475 >gi|312172834|emb|CBX81090.1| exodeoxyribonuclease I [Erwinia amylovora ATCC BAA-2158] Length = 475 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 248/469 (52%), Positives = 339/469 (72%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV IT Sbjct: 7 QPTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A + G+ EAEF+ RIH FS NTC++GYNN+RFDD SRN+FYRNFYD Y WS Sbjct: 67 GITPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R N + IA Sbjct: 187 YATIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I C+L DM +LD+ L RL+T DEL G PVP+K VH+NKCP Sbjct: 247 PLAWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 ++ P + + E ER GID +RCL+NL LLRQ +R++ ++ + P + S DVDSQ+ Sbjct: 307 VVAPANTLRPEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQI 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL +KE+Q W Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR++M + R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++ Sbjct: 427 LQHRRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELVS 475 >gi|259908083|ref|YP_002648439.1| exonuclease I [Erwinia pyrifoliae Ep1/96] gi|224963705|emb|CAX55202.1| Exodeoxyribonuclease I [Erwinia pyrifoliae Ep1/96] gi|283477982|emb|CAY73898.1| exodeoxyribonuclease I [Erwinia pyrifoliae DSM 12163] Length = 475 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 251/469 (53%), Positives = 338/469 (72%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV IT Sbjct: 7 QPTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD SRN+FYRNFYD Y WS Sbjct: 67 GITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ ++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IA Sbjct: 187 YATIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I C+L GDM +LD+ L RL+T +EL G PVP+K VH+NKCP Sbjct: 247 PLAWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 ++ P + + E ER GID +RCL+NL LLRQ +RD+ ++ + S DVD+QL Sbjct: 307 VVAPANTLRAEDAERIGIDRQRCLDNLALLRQHPEVRDKVVTLFADAQPFTPSDDVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q W Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR++ML R++ Y +L+ L +Y+GD ++ + AL+ Y+Q ++ Sbjct: 427 LQHRRQMLNPERVQGYVQELEMLFNQYEGDRARQEQLKALFAYMQELVS 475 >gi|146312271|ref|YP_001177345.1| exonuclease I [Enterobacter sp. 638] gi|145319147|gb|ABP61294.1| Exodeoxyribonuclease I subunit C [Enterobacter sp. 638] Length = 476 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 243/468 (51%), Positives = 326/468 (69%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG +LDRP+QFA +R D + I EVF+CKPADDYLP P AV +T Sbjct: 9 QPSFLFHDYETFGTSPSLDRPSQFAAIRTDADFTIIGEPEVFYCKPADDYLPQPGAVIVT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RN+ YRNFYD Y WS Sbjct: 69 GITPQEAREKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNVLYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N NSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQNRNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + ++ +PKLFEYL +RNK +L LID+ M PLVH+SGMFGA R NT+ +A Sbjct: 189 YATIEMAKRVKTAQPKLFEYLLSHRNKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L RL+T EL VP+K VH+NKCP Sbjct: 249 PLAWHPDNRNAVIMVDLAGDITPLLELDSDALRARLYTPKSELGEDAAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E ER GI+ ++CL+NL +LR +RD+ AI+ + S +VD+QL Sbjct: 309 VLAQANTLRPEDAERLGINRQQCLDNLKVLRDNPQVRDKVVAIFAEAEPFVPSDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ W Sbjct: 369 YNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDESEQERW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L+HR+ + T ++ Y +L+ L +Y+GD K+ L+ ALY+Y Q ++ Sbjct: 429 LQHRRNVFTPEYLQCYAQELEMLFTQYEGDAEKQNLLKALYQYAQEIV 476 >gi|238761111|ref|ZP_04622088.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638] gi|238761364|ref|ZP_04622340.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638] gi|238700338|gb|EEP93079.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638] gi|238700591|gb|EEP93331.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638] Length = 476 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 258/470 (54%), Positives = 343/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 SPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+AL GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQQALAKGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDISDMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L +P+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLNAQDAAIPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER GID +RCL NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLAENAERLGIDRQRCLRNLQLLRQNPQIREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTDPQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL HR++ L R++EY +L+ +Y+GD+ K L+ AL++Y + ++ Sbjct: 427 WLAHRREALNPERVQEYVLQLEQFYNQYEGDKEKLALLKALFDYARDLVS 476 >gi|262275634|ref|ZP_06053443.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886] gi|262219442|gb|EEY70758.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886] Length = 474 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 232/470 (49%), Positives = 313/470 (66%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYETFG ALDRP QFAGVR D+ + I V +C+P +DYLP PEA IT Sbjct: 6 QPTFFFFDYETFGTSPALDRPCQFAGVRTDKDFNIIGEPLVIYCQPPNDYLPQPEACLIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A++ G+ E EF +IH+ S+P TC +GYNNIRFDD +R YRNF+D Y W Sbjct: 66 GITPQTAVKRGLPEPEFIAKIHEQLSMPGTCAVGYNNIRFDDEVTRYTLYRNFFDPYGWI 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA PDGI+WP D+G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRAAYALRPDGIEWPVNDEGNISFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+ + ++ +P+LF+YLY +RNKN+L LID+ +M PLVHVSGMFG R NT+ I Sbjct: 186 HATIEMAKKLKAAQPRLFDYLYTHRNKNKLTALIDVVSMKPLVHVSGMFGVERGNTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVAWHP K++VI +L D DLD+ L +RL+T H +L +PVP+K +H+NKC Sbjct: 246 PVAWHPDNKNAVIAIDLGRDPSPLFDLDADALRERLYTKHADLAPDELPVPVKLIHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 P+L + E R GID ++CLENL L+ +R++ +Y KP +SS +VD+ Sbjct: 306 PVLADAKTLRPEDAARLGIDRQQCLENLKKLQAHPEIREKLVTLYAEKPEYASSGNVDAA 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ DR MD I +T PE L+ L++ SD R+ L FRYRARNFP TL++ E++ Sbjct: 366 LYDGFFSPADRSTMDIIRQTKPENLAALDIQVSDPRIKPLLFRYRARNFPWTLTDSEQKQ 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W HR+ + + Y L++L+ + DE K ++ ++Y Y++ ++ Sbjct: 426 WHMHRRDYF-EAELPAYMANLEALAEANQNDEKKFAILKSVYHYIESLVS 474 >gi|238749982|ref|ZP_04611486.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380] gi|238711911|gb|EEQ04125.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380] Length = 476 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 260/470 (55%), Positives = 341/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCTPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P GI WP +DG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPAGIVWPENEDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI NMTPLVHVSGMFGA+R NT+ +A Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIANMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKC Sbjct: 247 PLAWHPDNKNAVIMCDLAGDMSPLLELDSDALRERLYTRRDKLNAQEAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER GID +RCLENL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WLEHR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLEHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLVS 476 >gi|238757180|ref|ZP_04618367.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236] gi|238704558|gb|EEP97088.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236] Length = 476 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 SPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSNTLRERLYTRRDKLGAQDAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER GID +RCL+NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTEPKNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WLEHR++ L +++ Y +L+ +Y+ D+ K L+ AL++Y + ++ Sbjct: 427 WLEHRREALNAEKVQAYMLQLEQFYNQYEDDKEKLALLKALFDYARDLVS 476 >gi|238789860|ref|ZP_04633641.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641] gi|238722056|gb|EEQ13715.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641] Length = 476 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 264/470 (56%), Positives = 345/470 (73%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +CKPADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCKPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI NMTPLVHVSGMFGA+R NT+ +A Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIVNMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM LDS L +RL+T D+L G VP+K VH+NKC Sbjct: 247 PLAWHPDNKNAVIMCDLAGDMSPLLSLDSDTLRERLYTRRDKLNAGDAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359 P+L P E+ ER GID +RCLENL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAQAEAFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T P+ L L+L F D RL LFFR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDSRLEPLFFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WLEHR+ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLEHRRAALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARSLVS 476 >gi|307130832|ref|YP_003882848.1| exonuclease I [Dickeya dadantii 3937] gi|306528361|gb|ADM98291.1| exonuclease I [Dickeya dadantii 3937] Length = 476 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 260/468 (55%), Positives = 329/468 (70%), Gaps = 2/468 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLPDPEAV ITG Sbjct: 8 PTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDPEAVMITG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A G EAEF+R IH+ FS P TCI+GYNNIRFDD SRN+FYRNFYD Y +SW Sbjct: 68 ITPQVAQSRGTREAEFARHIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFYDPYAYSW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWDLLD++RA YA PDGI WP DDG SF+L+ L ANG+EH AHDA +DVY Sbjct: 128 QNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVY 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P Sbjct: 188 ATIAMARLLKQSQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 +AWHP +++VI C+L+GD++ +LD+ +L RL+T L + PVPIK VH+NKCP Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLELDADELRTRLYTRRALLAEDESPVPIKLVHINKCP 307 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQL 360 +L P + E ER GID +RCL NL LLRQ ++R++ A++ S DVD QL Sbjct: 308 VLAPASTLRPEDAERLGIDRQRCLNNLQLLRQHGSVREKVVALFADAPPFEVSTDVDLQL 367 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR MD I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q W Sbjct: 368 YDGFFSDADRAAMDIIRKTDSQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L HR+ + T R+++Y + L L ++ GDE K L+ AL+ Y Q ++ Sbjct: 428 LAHRRAVFTTDRVQDYFDALNQLYQQHDGDEKKTALLKALFAYAQQLL 475 >gi|253688149|ref|YP_003017339.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754727|gb|ACT12803.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 475 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 255/469 (54%), Positives = 331/469 (70%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ A DRPAQFAGVR D + I V +C+P+DDYLP+PEAV IT Sbjct: 6 QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 66 GITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLD +RA YA P+GI WP +DG SF+L+ L ANGI H AHDA +DV Sbjct: 126 WQNGNSRWDLLDALRACYALRPEGIIWPENNDGLPSFRLEHLTKANGISHEQAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFTLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKC Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSETLRERLYTRRDALEPDQSAVPLKLVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359 P+L P + + E ER ID +RCL+NL LLR T++R++ ++ + ++S DVD + Sbjct: 306 PVLAPANTLRPEDAERLSIDRQRCLDNLALLRNNTSVREKVVELFAEAPAFAASDDVDLR 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF D DR M I TAP+ L L+L F+D RL L FRYRARNFP TL ++E+Q Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL+HR+ + T R+++Y ++L +L ++ D+ K + ALY Y Q ++ Sbjct: 426 WLQHRRAVFTPERLQDYLSELSNLYQLHEDDKEKMAQLKALYAYAQELV 474 >gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62] gi|254040338|gb|ACT57134.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62] Length = 471 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 471/471 (100%), Positives = 471/471 (100%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI Sbjct: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW Sbjct: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD Sbjct: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI Sbjct: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC Sbjct: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL Sbjct: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW Sbjct: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE Sbjct: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 >gi|332161149|ref|YP_004297726.1| exonuclease I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665379|gb|ADZ42023.1| exonuclease I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 476 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 255/470 (54%), Positives = 343/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WLEHR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y + ++ Sbjct: 427 WLEHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 476 >gi|288549827|ref|ZP_05968320.2| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316] gi|288317556|gb|EFC56494.1| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316] Length = 478 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV +TG Sbjct: 12 PTFLFHDYETFGTHPALDRPAQFAAIRTDEDFNIIGEPEVFYCKPADDYLPQPGAVMVTG 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW Sbjct: 72 ITPQEARDKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 131 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N NSRWDLLD+MRA +A P+GI WP ++G TSF+L+ L ANGIEH NAHDA ADVY Sbjct: 132 QNRNSRWDLLDIMRACHALRPEGITWPENEEGLTSFRLEHLTRANGIEHSNAHDAMADVY 191 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L++ +P+LF+YL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP Sbjct: 192 ATIAMAKLVKTAQPRLFDYLLSHRSKQKLITLIDVPQMKPLVHISGMFGAWRGNTSWVAP 251 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+GD+ +LDS L +RL+T D L + VP+K VH+NKCP+ Sbjct: 252 LAWHPDNRNAVIMVDLAGDISPLLELDSDALRERLYTPKDALGDVPAVPVKLVHINKCPV 311 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361 L + + E +R GI+ + CL+NL +LR +R++ AI+ + S++VD+QLY Sbjct: 312 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 371 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL Sbjct: 372 NGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 431 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR+ + T ++ Y +L+ L Y GD K+ + ALY+Y+Q ++ Sbjct: 432 QHRRNIFTPEFLQRYAEELEMLYSHYNGDAEKQAQLKALYQYVQEIV 478 >gi|291326156|ref|ZP_06123420.2| exodeoxyribonuclease I [Providencia rettgeri DSM 1131] gi|291315456|gb|EFE55909.1| exodeoxyribonuclease I [Providencia rettgeri DSM 1131] Length = 479 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 249/469 (53%), Positives = 325/469 (69%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE EVF+C PADDYLP PEAV IT Sbjct: 11 QPTFFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIEEPEVFYCAPADDYLPQPEAVMIT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF++RIH FSVPNTCI+GYNNIRFDD +RNIFYRNFYD Y +S Sbjct: 71 GITPQVALSQGVNEAEFAKRIHAAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLD +RA +A P+G+QWP +DG S +L+ L ANG+ H NAHDA +DV Sbjct: 131 WQQGNSRWDLLDTLRACFALRPEGLQWPENEDGLPSMRLEHLTKANGVAHENAHDAMSDV 190 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + L++ +P++F+Y Y RNKN++ +LIDI +TPLVHVSGMFGA RS +L+A Sbjct: 191 LATINMAKLLKAAQPRMFDYFYQLRNKNKISQLIDIVEITPLVHVSGMFGALRSYVSLVA 250 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP K++VI C+LS D+ +LD QL RL+T EL G PVP+K VH+NKCP Sbjct: 251 PLAWHPDNKNAVIMCDLSADISPLVELDVQQLRTRLYTPKAELAGASPVPVKLVHINKCP 310 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360 IL P + E ER G+D C+ NL LR+ +R++ ++++P + S DVD+Q+ Sbjct: 311 ILAPEKTLRPEDAERTGVDRDLCMRNLETLRKNPEIRNKLIELFSEPQVFTESDDVDTQI 370 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+ DR MD I T+P+ L L L F D+R+ ELFFRY+ARN+P TLS E+Q W Sbjct: 371 YNGFFSPSDRSTMDIIRETSPQNLPALELSFEDKRMKELFFRYKARNYPATLSYDEQQRW 430 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR+ + R+ EY ++Q L E++ DE + + AL Y + + Sbjct: 431 LQHRRDYFSEERLTEYMQQIQLLLVEHQHDEKRCQQLKALISYARDLAS 479 >gi|123442974|ref|YP_001006949.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089935|emb|CAL12792.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 476 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 254/470 (54%), Positives = 341/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH +AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTKAQNLPALDLTFQDPRLEVLLFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL HR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y + ++ Sbjct: 427 WLAHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 476 >gi|318605038|emb|CBY26536.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. palearctica Y11] Length = 476 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 255/470 (54%), Positives = 343/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDITDMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WLEHR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y + ++ Sbjct: 427 WLEHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 476 >gi|51595906|ref|YP_070097.1| exonuclease I [Yersinia pseudotuberculosis IP 32953] gi|170024741|ref|YP_001721246.1| exonuclease I [Yersinia pseudotuberculosis YPIII] gi|186894995|ref|YP_001872107.1| exonuclease I [Yersinia pseudotuberculosis PB1/+] gi|51589188|emb|CAH20808.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 32953] gi|169751275|gb|ACA68793.1| Exodeoxyribonuclease I [Yersinia pseudotuberculosis YPIII] gi|186698021|gb|ACC88650.1| Exonuclease domain protein [Yersinia pseudotuberculosis PB1/+] Length = 476 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 258/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV IT Sbjct: 7 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+Q Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M I +T P+ L L+L F D RL L FR+RARN+P+TL+ E+Q Sbjct: 367 LYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNNSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476 >gi|153949389|ref|YP_001401389.1| exonuclease I [Yersinia pseudotuberculosis IP 31758] gi|152960884|gb|ABS48345.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 31758] Length = 476 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 259/470 (55%), Positives = 343/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+Q Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVADDVDTQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M I +T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476 >gi|290475866|ref|YP_003468758.1| exonuclease I [Xenorhabdus bovienii SS-2004] gi|289175191|emb|CBJ81994.1| exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase [Xenorhabdus bovienii SS-2004] Length = 475 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 245/469 (52%), Positives = 329/469 (70%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F ++DYETFG+ ALDRPAQFAG+R D + IE V +C PADDYLPDPEAV IT Sbjct: 6 TPTFYVHDYETFGKHPALDRPAQFAGIRTDSDFNIIEDPLVVYCLPADDYLPDPEAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL+ GV EAEF+R+IH+ FS PNTCIIGYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 66 GITPQLALKKGVNEAEFARQIHEAFSKPNTCIIGYNNIRFDDEVSRNIFYRNFYDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA P+GI WP +DG SFKL++L ANG+EH AHDA +DV Sbjct: 126 WQKGNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLENLTKANGVEHTQAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ +++ +P+LF+Y + RNK ++ IDI M PLVHVSGMFG RSN +LIA Sbjct: 186 YATIAMAKRVKKAQPRLFDYFFQLRNKQKVSNQIDIPQMKPLVHVSGMFGTLRSNISLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GD+ +L + +L +RL+T +EL+ G PVPIK +H+NKC Sbjct: 246 PLAWHPTNRNAVIMCDLAGDISPLLELSADELRERLYTRRNELQPGQAPVPIKLMHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 PI+ P + + E ER G++ +C +NL +LR +R++ ++++ S +VD++ Sbjct: 306 PIIAPENTLRTEDAERVGLNRDQCAKNLAILRSNPQIREKVVELFSQPEEFPESDNVDTK 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+D D+ M+ I TAP+ L L+L F D R+ L FRYRARN+P TL+ E+Q Sbjct: 366 LYSGFFSDADKTAMEIIRETAPKNLPALDLTFQDPRIKTLLFRYRARNYPATLNYDEQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL HR+++LT+ I +Y ++ L EY+ DE K + AL +Y + Sbjct: 426 WLYHRREILTQENISQYLAAIEQLFVEYQSDEEKCRQLKALVDYAVQLA 474 >gi|238795750|ref|ZP_04639264.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969] gi|238720476|gb|EEQ12278.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969] Length = 476 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 254/470 (54%), Positives = 341/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+I+Q F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQINQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L +P+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAIPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER GID +RCL+NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E++ Sbjct: 367 LYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQKR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WLEHR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLEHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476 >gi|300903879|ref|ZP_07121780.1| exonuclease [Escherichia coli MS 84-1] gi|301307139|ref|ZP_07213168.1| exonuclease [Escherichia coli MS 124-1] gi|300404137|gb|EFJ87675.1| exonuclease [Escherichia coli MS 84-1] gi|300837654|gb|EFK65414.1| exonuclease [Escherichia coli MS 124-1] gi|315253362|gb|EFU33330.1| exonuclease [Escherichia coli MS 85-1] Length = 499 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 328/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 25 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 85 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 324 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R+ AI+ + + S Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPS 384 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 385 DNVDAQLYSGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 499 >gi|242239639|ref|YP_002987820.1| exonuclease I [Dickeya dadantii Ech703] gi|242131696|gb|ACS85998.1| Exodeoxyribonuclease I [Dickeya dadantii Ech703] Length = 476 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 250/467 (53%), Positives = 323/467 (69%), Gaps = 2/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F I+DYETFG+ A DRPAQFAG+R D+ + I V +C+PADDYLPDPEAV ITGI Sbjct: 9 TFFIHDYETFGKHPAKDRPAQFAGIRTDQDFNVIGEPVVIYCQPADDYLPDPEAVMITGI 68 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A G+ E +F+R+IH FS P TCI+GYNNIRFDD SRN+FYRNF D Y +SW Sbjct: 69 TPQLASSKGIGEVDFARQIHDAFSTPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSWQ 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD +RA YA P+GI WP ++G SF+L+ L ANGIEH +AHDA +DVYA Sbjct: 129 NGNSRWDLLDALRACYALRPEGIVWPENEEGFPSFRLEHLTRANGIEHEHAHDAMSDVYA 188 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ L ++ +P+LF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P+ Sbjct: 189 TIAMARLFKQTQPRLFDYLYQLRNKNKVNALIDIAEMKPLVHVSGMFGAARGNTSWIVPL 248 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP +++VI C+L+GD+ +L + L RL+T D L + PVPIK VH+NKCP+ Sbjct: 249 AWHPENRNAVIVCDLAGDIDPLLNLSADALRTRLYTRRDLLGENESPVPIKLVHINKCPV 308 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLY 361 L P + E R G+D +RCL+NL LLRQ +R++ A++ + DVD QLY Sbjct: 309 LAPAATLRPEDAARLGVDRQRCLDNLKLLRQHPLVREKVVALFADAPAFEPAADVDLQLY 368 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF D DR M I TAP+ L L L F+DRR+ EL FRYRARNFP TL ++E+Q WL Sbjct: 369 DGFFGDADRAAMTIIRETAPQHLPALKLQFADRRMEELLFRYRARNFPGTLDDQEQQRWL 428 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 HR+++ T R++ Y L+SL + DE K L+ AL+ Y Q ++ Sbjct: 429 RHRREIFTPERLQSYSETLESLYQIHADDEKKIALLKALFTYAQQLV 475 >gi|317048759|ref|YP_004116407.1| exodeoxyribonuclease I [Pantoea sp. At-9b] gi|316950376|gb|ADU69851.1| Exodeoxyribonuclease I [Pantoea sp. At-9b] Length = 473 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 248/467 (53%), Positives = 327/467 (70%), Gaps = 1/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +DYETFG+ +LDRPAQFAG+R D+ + I +VF+C+PADDYLP PEAV ITGI Sbjct: 7 TFLFHDYETFGKSPSLDRPAQFAGLRTDKDFNAIGEPQVFYCQPADDYLPQPEAVMITGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A GV EA F+ RIH FS P TC++GYNN+RFDD +RNIFYRNF+D Y WSW Sbjct: 67 TPQTAQARGVTEAAFAERIHGLFSEPQTCVVGYNNVRFDDEVTRNIFYRNFFDPYGWSWQ 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+ H AHDA +DVYA Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTKANGVAHEQAHDAMSDVYA 186 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 TLA+ L++EK+PKLFE+L+ +RNK +L LIDI M PLVHVSGMFGA+R NT+ + P+ Sbjct: 187 TLAMAKLVKEKQPKLFEFLFSHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 AWHP ++++I +L+GDM L +L +RL+T H EL VPIK VH+NKCP+L Sbjct: 247 AWHPDNRNALIVADLAGDMSPLLTLSPDELRERLYTRHSELGDQAAVPIKLVHINKCPVL 306 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362 P + + E ER ID + CL NL LLRQ +R+ ++ + + S DVD+QLY+ Sbjct: 307 APANTLRPEDAERLNIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFTPSDDVDAQLYN 366 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 GFF+D DR M+ + +T + L L+L F D+R+ L FRYRARNFP TL + E+Q WL+ Sbjct: 367 GFFSDADRAAMNIVRQTPAQNLPALDLTFDDKRIARLLFRYRARNFPGTLDDAEQQRWLQ 426 Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 HR++ L R++ + +L+SL+ ++G+ K GL+ ALY Y Q ++ Sbjct: 427 HRREALNAERVQAFLLELESLASLHEGNAEKLGLLKALYLYAQELVS 473 >gi|300947322|ref|ZP_07161523.1| exonuclease [Escherichia coli MS 116-1] gi|300453074|gb|EFK16694.1| exonuclease [Escherichia coli MS 116-1] Length = 475 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 328/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E R GI+ + CL+NL +LR+ +R+ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDANRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|188495966|ref|ZP_03003236.1| exodeoxyribonuclease I [Escherichia coli 53638] gi|188491165|gb|EDU66268.1| exodeoxyribonuclease I [Escherichia coli 53638] Length = 475 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|157161503|ref|YP_001458821.1| exonuclease I [Escherichia coli HS] gi|157067183|gb|ABV06438.1| exodeoxyribonuclease I [Escherichia coli HS] Length = 475 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|194431379|ref|ZP_03063671.1| exodeoxyribonuclease I [Shigella dysenteriae 1012] gi|194420204|gb|EDX36281.1| exodeoxyribonuclease I [Shigella dysenteriae 1012] gi|332091578|gb|EGI96659.1| exodeoxyribonuclease I [Shigella dysenteriae 155-74] Length = 475 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 245/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLE+R+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEYRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|170682338|ref|YP_001743128.1| exonuclease I [Escherichia coli SMS-3-5] gi|301019172|ref|ZP_07183372.1| exonuclease [Escherichia coli MS 69-1] gi|170520056|gb|ACB18234.1| exodeoxyribonuclease I [Escherichia coli SMS-3-5] gi|300399365|gb|EFJ82903.1| exonuclease [Escherichia coli MS 69-1] Length = 475 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E ER GI + CL+NL +LR+ +RD+ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 + E+Q WLEHR+++ T ++ Y ++Q L+ Y D+ K L+ AL++Y + ++ Sbjct: 421 DNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV 475 >gi|170019660|ref|YP_001724614.1| exonuclease I [Escherichia coli ATCC 8739] gi|194436340|ref|ZP_03068442.1| exodeoxyribonuclease I [Escherichia coli 101-1] gi|169754588|gb|ACA77287.1| Exodeoxyribonuclease I [Escherichia coli ATCC 8739] gi|194425068|gb|EDX41053.1| exodeoxyribonuclease I [Escherichia coli 101-1] Length = 475 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|307138678|ref|ZP_07498034.1| exonuclease I [Escherichia coli H736] Length = 475 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|290508687|ref|ZP_06548058.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55] gi|289778081|gb|EFD86078.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55] Length = 474 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 250/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV ITGIT Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GDM +LD+ L +RL+TS EL L PIK VHLNKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTSRAELGDLPAAPIKLVHLNKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY+G Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLEH Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++ Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474 >gi|227357738|ref|ZP_03842087.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906] gi|227162067|gb|EEI47081.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906] Length = 476 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 248/470 (52%), Positives = 325/470 (69%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F IYDYETFG A+DRPAQFAGVR D + IE V +CKP DDYLP PEAV IT Sbjct: 7 TPTFYIYDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL++GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S Sbjct: 67 GITPQIALKNGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA P+GI WP DDG SF+L+ L ANGI H NAHDA +DV Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ +++ +P++F+Y ++ R+K +++ LIDI MTPLVHVSGMFGA+RSN +L+A Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+ D+ L S QL +RL+T EL PVPIK +H+NKC Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PI+ P + + + +R G+D CL N +L +R++ I+ + + + DVD+Q Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPADDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M+ I T P+ L LNL F D R+ LFFRYRARNFP TL+ E+Q Sbjct: 367 LYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL HRK+ LT ++ EY N +Q L+ E+ +E K + LY Y Q + Sbjct: 427 WLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEIAS 476 >gi|15832067|ref|NP_310840.1| exonuclease I [Escherichia coli O157:H7 str. Sakai] gi|168764097|ref|ZP_02789104.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501] gi|217329517|ref|ZP_03445596.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588] gi|291283248|ref|YP_003500066.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615] gi|13362281|dbj|BAB36236.1| exonuclease I [Escherichia coli O157:H7 str. Sakai] gi|189365832|gb|EDU84248.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501] gi|217317285|gb|EEC25714.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588] gi|226237418|dbj|BAH46940.1| exonuclease I [Escherichia coli O55:H7] gi|290763121|gb|ADD57082.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615] gi|320646788|gb|EFX15665.1| exonuclease I [Escherichia coli O157:H- str. 493-89] gi|320652067|gb|EFX20410.1| exonuclease I [Escherichia coli O157:H- str. H 2687] gi|320657429|gb|EFX25227.1| exonuclease I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663245|gb|EFX30550.1| exonuclease I [Escherichia coli O55:H7 str. USDA 5905] gi|320668145|gb|EFX35014.1| exonuclease I [Escherichia coli O157:H7 str. LSU-61] gi|326338368|gb|EGD62196.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1044] gi|326347111|gb|EGD70844.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1125] Length = 475 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|300920252|ref|ZP_07136698.1| exonuclease [Escherichia coli MS 115-1] gi|301018905|ref|ZP_07183135.1| exonuclease [Escherichia coli MS 196-1] gi|299882459|gb|EFI90670.1| exonuclease [Escherichia coli MS 196-1] gi|300412754|gb|EFJ96064.1| exonuclease [Escherichia coli MS 115-1] Length = 499 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 25 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 85 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 324 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499 >gi|317491333|ref|ZP_07949769.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920880|gb|EFV42203.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 474 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 257/474 (54%), Positives = 339/474 (71%), Gaps = 5/474 (1%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M+ F+I+DYETFG+ ALDRPAQFAGVR D + IE V +C+P+DDYLP PEA Sbjct: 1 MSKAAPTFLIHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPSDDYLPQPEA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V ITGITPQ AL GV EAEFSR+I+Q FSVP TCI+GYNNIRFDD SRNIFYRNFYD Sbjct: 61 VMITGITPQVALTRGVSEAEFSRQINQIFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDP 120 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y +SW NGNSRWDLLDV+R YA P+GI WP ++G SFKL+ L+ ANGIEH NAHDA Sbjct: 121 YAYSWQNGNSRWDLLDVLRTCYALRPEGINWPENEEGLPSFKLEHLSKANGIEHENAHDA 180 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 ADVYAT+AL L+++ +PKLF+YL+ RNK+++ L+DI NM PLVH+SGMFGA R NT Sbjct: 181 MADVYATIALAKLVKQAQPKLFDYLFQLRNKHKVSALLDIANMKPLVHISGMFGALRGNT 240 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV-PIKEVH 296 +L+AP+AWHP K++VI C+L+GDM +LD+ L +RL+T EL+ P P+K VH Sbjct: 241 SLVAPLAWHPDNKNAVIMCDLAGDMSPLLELDTDALRERLYTRRSELRSDQPPAPLKLVH 300 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQD 355 +NKCP+L P + E+ ER G+D +RC++NL LLR LRD+ A++ + +S D Sbjct: 301 INKCPVLAPDQTLRPENAERLGLDRQRCMDNLQLLRNHPELRDKVVAVFAEAEPFKASDD 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD+QLYDGFF+D DR M I T P+ L L+L F+D+R+ L FRYRARNFP TL++ Sbjct: 361 VDAQLYDGFFSDADRSAMQIIRETLPQNLPALDLTFNDKRVLPLLFRYRARNFPTTLTDD 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E++ W HR+ +LT R++ Y ++L+ L ++ + K + L+EY + ++ Sbjct: 421 EQRRWQLHRQAVLTPERLQAYIHQLEELYNRHEDEPEKLAQLKELFEYARQLVN 474 >gi|238784349|ref|ZP_04628360.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970] gi|238714777|gb|EEQ06778.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970] Length = 476 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 255/470 (54%), Positives = 337/470 (71%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTRANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 HATIAMAKLVKQVQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDRLSAQDAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER GID + CL NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLPENAERLGIDRQHCLRNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL+ E++ Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTYSEQKR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WLEHR++ L +++Y +L+ +Y+ D+ K L+ AL++Y + ++ Sbjct: 427 WLEHRREALNPELVQDYVLQLEQFYNQYEDDKEKLALLKALFDYAKGLVS 476 >gi|238793487|ref|ZP_04637112.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909] gi|238727260|gb|EEQ18789.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909] Length = 476 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 260/470 (55%), Positives = 341/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFSRQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM LDS L +RL+T D+L VP+K VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLALDSDTLRERLYTRRDKLNTQDAAVPLKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ ER GID +RCL+NL LLRQ +R++ A++ + + S DVD+Q Sbjct: 307 PVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M IL+T P+ L L+L F D RL LFFR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLETLFFRFRARNYPNTLTDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL HR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLAHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLVS 476 >gi|300824755|ref|ZP_07104860.1| exonuclease [Escherichia coli MS 119-7] gi|300522742|gb|EFK43811.1| exonuclease [Escherichia coli MS 119-7] Length = 499 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 25 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 85 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 324 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499 >gi|212712795|ref|ZP_03320923.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM 30120] gi|212684487|gb|EEB44015.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM 30120] Length = 479 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 251/469 (53%), Positives = 327/469 (69%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + I EVF+CKP DDYLP PEAV IT Sbjct: 11 QPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDYLPQPEAVMIT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A+ +GV EAEF++RIHQ FSVPNTCI+GYNNIRFDD +RNIFYRNFYD Y +S Sbjct: 71 GITPQIAMANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLD +RA +A P+GI WP DDG S +L+ L ANG+ H NAHDA +DV Sbjct: 131 WQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVSHENAHDAMSDV 190 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + L+++ +P++F+Y Y RNKN++ +LIDI +MTPLVHVSGMFGA RS +L+ Sbjct: 191 LATINMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVSLVT 250 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP K++VI C+LSGDM L + +L +RL+T EL +PVPIK VH+NKCP Sbjct: 251 PLAWHPENKNAVIMCDLSGDMSPLLTLSADELRERLYTPKAELGDDLPVPIKLVHINKCP 310 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL PI+ + ER G+D C+ NL LLR+ ++R++ +++ S DVDSQ+ Sbjct: 311 ILAPINTLRTVDAERTGLDRDLCMRNLELLRKNPDVRNKLIELFSVGQQFEESNDVDSQI 370 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+ DR MD I TAP+ L L+L F D+R+ ELFFRY+ARN+P TLS E+Q W Sbjct: 371 YNGFFSPSDRSTMDIIRETAPQNLPALDLSFEDKRMKELFFRYKARNYPSTLSYDEQQRW 430 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR+ T +R+ +Y ++Q L G + DE + + AL Y + Sbjct: 431 LQHRRDYFTEARLTDYLQQIQLLMGVHHEDEKRCQQLKALVNYAYELAS 479 >gi|300717468|ref|YP_003742271.1| exodeoxyribonuclease I [Erwinia billingiae Eb661] gi|299063304|emb|CAX60424.1| Exodeoxyribonuclease I [Erwinia billingiae Eb661] Length = 475 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 248/467 (53%), Positives = 338/467 (72%), Gaps = 1/467 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG+ +LDRPAQFAG+R D + I EVF+C+PADDYLP PEAV IT Sbjct: 7 QPTFLFHDYETFGKSPSLDRPAQFAGIRTDMDFNIIGEPEVFYCQPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ EA F++RIH FS PNTCI+GYNN+RFDD +RN+ YRNFYD Y W+ Sbjct: 67 GITPQLAKAKGISEAAFTKRIHALFSEPNTCIVGYNNVRFDDEVTRNLLYRNFYDPYGWA 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANG+ H NAHDA +DV Sbjct: 127 WQHGNSRWDLLDVMRACYALRPEGIAWPENDDGLPSFRLEHLTKANGVSHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++EK+P+L+++L+ +RNKN++ LIDI M PLVH+SGMFGA R NT+ IA Sbjct: 187 YATIAMAKLVKEKQPRLYDFLFTHRNKNKITALIDIPQMKPLVHISGMFGAFRGNTSWIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP K+++I C+L+GD+ +LD+ L +RL+T +EL PVP+K +H+NKCP Sbjct: 247 PLAWHPVNKNALITCDLAGDITPLLELDADTLRERLYTRREELGDNAPVPVKLMHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 ++ P + + E ER GID KRCL+NL +LRQ +R++ A++ + + S DVD+QL Sbjct: 307 VVAPANTLRPEDAERLGIDRKRCLDNLAILRQHPEVREKVVALFAEAEPFAGSSDVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M+ I +T PE L L+L F+D R+ +L FR+RARN+P TL E E+ W Sbjct: 367 YDGFFSDADRNTMNIIQQTLPENLPALDLTFNDARIEKLLFRFRARNYPGTLDEAEQTRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 L+HR++ L R++ Y +L+ L +Y+GD GKE + L++Y+Q + Sbjct: 427 LQHRREALNPERVQSYVQELEMLFNQYEGDIGKEKDLKMLFQYVQNL 473 >gi|260855993|ref|YP_003229884.1| exonuclease I [Escherichia coli O26:H11 str. 11368] gi|257754642|dbj|BAI26144.1| exonuclease I [Escherichia coli O26:H11 str. 11368] gi|323152400|gb|EFZ38688.1| exodeoxyribonuclease I [Escherichia coli EPECa14] Length = 475 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 241/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+ G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|254228381|ref|ZP_04921808.1| exonuclease family [Vibrio sp. Ex25] gi|262394467|ref|YP_003286321.1| exodeoxyribonuclease I [Vibrio sp. Ex25] gi|151939187|gb|EDN58018.1| exonuclease family [Vibrio sp. Ex25] gi|262338061|gb|ACY51856.1| exodeoxyribonuclease I [Vibrio sp. Ex25] Length = 473 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 226/469 (48%), Positives = 313/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNVIGEPLVMYCQPPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R K +L +L+DI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|320641419|gb|EFX10863.1| exonuclease I [Escherichia coli O157:H7 str. G5101] Length = 475 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|300956271|ref|ZP_07168577.1| exonuclease [Escherichia coli MS 175-1] gi|300316894|gb|EFJ66678.1| exonuclease [Escherichia coli MS 175-1] Length = 491 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|331642634|ref|ZP_08343769.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli H736] gi|331039432|gb|EGI11652.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli H736] Length = 491 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|218558892|ref|YP_002391805.1| exonuclease I [Escherichia coli S88] gi|218365661|emb|CAR03398.1| exonuclease I [Escherichia coli S88] Length = 475 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGIHWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|288934485|ref|YP_003438544.1| exodeoxyribonuclease I [Klebsiella variicola At-22] gi|288889194|gb|ADC57512.1| Exodeoxyribonuclease I [Klebsiella variicola At-22] Length = 474 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 249/465 (53%), Positives = 329/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV ITGIT Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVH+SGMFGA+R NT+L+AP+A Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHISGMFGAARGNTSLVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + + ER GI +RCLEN LLR +R++ A+Y + S++VD+QLY+G Sbjct: 310 QANTLRPQDAERLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLEH Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++ Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474 >gi|193071491|ref|ZP_03052403.1| exodeoxyribonuclease I [Escherichia coli E110019] gi|192955213|gb|EDV85704.1| exodeoxyribonuclease I [Escherichia coli E110019] Length = 475 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|85059110|ref|YP_454812.1| exonuclease I [Sodalis glossinidius str. 'morsitans'] gi|84779630|dbj|BAE74407.1| exonuclease I [Sodalis glossinidius str. 'morsitans'] Length = 473 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 281/466 (60%), Positives = 345/466 (74%), Gaps = 1/466 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+++DYETFG+ ALDRPAQFAG+R D Q+E + EVFFC+PADDYLPDPEAV ITG Sbjct: 8 PTFLVHDYETFGKYPALDRPAQFAGIRADSQFETLGEPEVFFCRPADDYLPDPEAVMITG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+ALRDGV EAEF+RRIHQ FSVP+TCI+GYNN+RFDD SRN+FYRNFYD Y WSW Sbjct: 68 ITPQQALRDGVTEAEFARRIHQLFSVPDTCILGYNNVRFDDEVSRNLFYRNFYDPYGWSW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNS WDLLDV+RA YA P+GI+WP DDG SF+L+ L ANGIEH NAHDA ADVY Sbjct: 128 QQGNSCWDLLDVVRACYALRPNGIEWPLNDDGLPSFRLEHLTRANGIEHANAHDAMADVY 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 ATLA+ L+R+ +PKLF+YLY +R K QL+ L+DI M PLVHVSGMFGA+R NTA IAP Sbjct: 188 ATLAMAKLMRQAQPKLFDYLYRHRGKRQLKSLVDIATMKPLVHVSGMFGAARGNTAWIAP 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++I C+LSGDM+V DLDS L RL+T D L VP+K V+LNKCP+ Sbjct: 248 LAWHPDNPNALIVCDLSGDMQVLADLDSDALRTRLYTRRDALGDNTAVPLKLVYLNKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361 L P + + ER GI +RCL+NLT LR + LR++ A++ + SS DVD+QLY Sbjct: 308 LAPANTLQPMDAERLGIQRQRCLDNLTWLRARPELREKVVALFAESAPFKSSDDVDAQLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF+D DR M+ IL TAPE L L++ F D RL L FRYRARNFPHTL E+ WL Sbjct: 368 DGFFSDADRAAMEIILATAPENLPALDISFVDARLKPLLFRYRARNFPHTLDHNEQLRWL 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 EHRK T+ R+E Y +L++L ++GDE K L+ AL+EYLQ + Sbjct: 428 EHRKTRFTQPRLEAYVQQLETLYLAHEGDEHKTRLLRALFEYLQTL 473 >gi|251789913|ref|YP_003004634.1| exonuclease I [Dickeya zeae Ech1591] gi|247538534|gb|ACT07155.1| Exodeoxyribonuclease I [Dickeya zeae Ech1591] Length = 476 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 258/468 (55%), Positives = 331/468 (70%), Gaps = 2/468 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F ++DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLPDP+AV ITG Sbjct: 8 PTFFVHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPADDYLPDPQAVMITG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A G+ E EF+R IH+ FSVP TCI+GYNNIRFDD SRN+FYRNF D Y +SW Sbjct: 68 ITPQIAQSRGIRETEFARHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWDLLD++RA YA PDGI WP DDG SF+L+ L ANG+EH AHDA +DVY Sbjct: 128 QNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVY 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P Sbjct: 188 ATIAMARLLKQAQPKLFDYLYGLRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 +AWHP +++VI C+L+GD++ LD+ +L RL+T D L + PVPIK VH+NKCP Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLSLDADELRTRLYTRRDLLAEDESPVPIKLVHINKCP 307 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L P + E ER GID + CL NL LLRQ +++R++ A++ P +++DVD QL Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQL 367 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q W Sbjct: 368 YDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L HR+ M T R+++Y + L L + GDE K L+ AL+ Y Q ++ Sbjct: 428 LAHRRAMFTTERVQDYFDTLNQLYQLHDGDEKKAALLKALFAYAQQLL 475 >gi|320175604|gb|EFW50697.1| Exodeoxyribonuclease I [Shigella dysenteriae CDC 74-1112] Length = 475 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|293410372|ref|ZP_06653948.1| sbcB [Escherichia coli B354] gi|291470840|gb|EFF13324.1| sbcB [Escherichia coli B354] Length = 475 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|256017814|ref|ZP_05431679.1| exonuclease I [Shigella sp. D9] Length = 475 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ + P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVVPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|262040031|ref|ZP_06013293.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042608|gb|EEW43617.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 474 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 248/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY+G Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLEH Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++ Sbjct: 430 RRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474 >gi|110642225|ref|YP_669955.1| exonuclease I [Escherichia coli 536] gi|161486193|ref|NP_754426.2| exonuclease I [Escherichia coli CFT073] gi|191170056|ref|ZP_03031610.1| exodeoxyribonuclease I [Escherichia coli F11] gi|227887062|ref|ZP_04004867.1| exodeoxyribonuclease I [Escherichia coli 83972] gi|110343817|gb|ABG70054.1| exodeoxyribonuclease I [Escherichia coli 536] gi|190909572|gb|EDV69157.1| exodeoxyribonuclease I [Escherichia coli F11] gi|227835412|gb|EEJ45878.1| exodeoxyribonuclease I [Escherichia coli 83972] gi|294493683|gb|ADE92439.1| exodeoxyribonuclease I [Escherichia coli IHE3034] gi|307554081|gb|ADN46856.1| C-terminal part of exodeoxyribonuclease I [Escherichia coli ABU 83972] Length = 475 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|309702335|emb|CBJ01657.1| exodeoxyribonuclease I [Escherichia coli ETEC H10407] Length = 475 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ +P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTHQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRGRLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEDIV 475 >gi|191167705|ref|ZP_03029513.1| exodeoxyribonuclease I [Escherichia coli B7A] gi|209919475|ref|YP_002293559.1| exonuclease I [Escherichia coli SE11] gi|190902218|gb|EDV61959.1| exodeoxyribonuclease I [Escherichia coli B7A] gi|209912734|dbj|BAG77808.1| exonuclease I [Escherichia coli SE11] gi|320198703|gb|EFW73303.1| Exodeoxyribonuclease I [Escherichia coli EC4100B] Length = 475 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|323183799|gb|EFZ69190.1| exodeoxyribonuclease I [Escherichia coli 1357] gi|332092391|gb|EGI97464.1| exodeoxyribonuclease I [Shigella boydii 5216-82] Length = 475 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|323972839|gb|EGB68038.1| exonuclease [Escherichia coli TA007] Length = 474 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 240/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|324016993|gb|EGB86212.1| exonuclease [Escherichia coli MS 117-3] Length = 499 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 25 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 84 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 85 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 324 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499 >gi|300926502|ref|ZP_07142295.1| exonuclease [Escherichia coli MS 182-1] gi|300417463|gb|EFK00774.1| exonuclease [Escherichia coli MS 182-1] Length = 499 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 25 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 85 PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 144 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 324 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL NL +LR+ +R++ AI+ + + S Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPS 384 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499 >gi|197284734|ref|YP_002150606.1| exonuclease I [Proteus mirabilis HI4320] gi|194682221|emb|CAR41929.1| exodeoxyribonuclease I [Proteus mirabilis HI4320] Length = 476 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 247/470 (52%), Positives = 324/470 (68%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F I+DYETFG A+DRPAQFAGVR D + IE V +CKP DDYLP PEAV IT Sbjct: 7 TPTFYIHDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL+ GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S Sbjct: 67 GITPQIALKHGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA P+GI WP DDG SF+L+ L ANGI H NAHDA +DV Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ +++ +P++F+Y ++ R+K +++ LIDI MTPLVHVSGMFGA+RSN +L+A Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+ D+ L S QL +RL+T EL PVPIK +H+NKC Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PI+ P + + + +R G+D CL N +L +R++ I+ + + + DVD+Q Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPADDVDAQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR M+ I T P+ L LNL F D R+ LFFRYRARNFP TL+ E+Q Sbjct: 367 LYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL HRK+ LT ++ EY N +Q L+ E+ +E K + LY Y Q + Sbjct: 427 WLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEIAS 476 >gi|330000618|ref|ZP_08303759.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3] gi|328537942|gb|EGF64123.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3] Length = 474 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 247/465 (53%), Positives = 328/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GDM +LD+ L +RL+T EL PIK VHLNKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDQPAAPIKLVHLNKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY+G Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLEH Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLEH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++ Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474 >gi|218699399|ref|YP_002407028.1| exonuclease I [Escherichia coli IAI39] gi|306814865|ref|ZP_07449027.1| exonuclease I [Escherichia coli NC101] gi|218369385|emb|CAR17142.1| exonuclease I [Escherichia coli IAI39] gi|305852259|gb|EFM52711.1| exonuclease I [Escherichia coli NC101] gi|323187688|gb|EFZ72989.1| exodeoxyribonuclease I [Escherichia coli RN587/1] gi|324008954|gb|EGB78173.1| exonuclease [Escherichia coli MS 57-2] Length = 475 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|206578810|ref|YP_002237569.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342] gi|206567868|gb|ACI09644.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342] Length = 474 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 248/465 (53%), Positives = 328/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY+G Sbjct: 310 QANTLRPLDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLEH Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++ Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474 >gi|300816639|ref|ZP_07096860.1| exonuclease [Escherichia coli MS 107-1] gi|300530869|gb|EFK51931.1| exonuclease [Escherichia coli MS 107-1] Length = 475 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 241/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+ G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|320177928|gb|EFW52912.1| Exodeoxyribonuclease I [Shigella boydii ATCC 9905] Length = 475 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L + L+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLREHLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLE+R+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEYRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|253773058|ref|YP_003035889.1| exonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162000|ref|YP_003045108.1| exonuclease I [Escherichia coli B str. REL606] gi|300930717|ref|ZP_07146095.1| exonuclease [Escherichia coli MS 187-1] gi|242377657|emb|CAQ32417.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase [Escherichia coli BL21(DE3)] gi|253324102|gb|ACT28704.1| Exodeoxyribonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973901|gb|ACT39572.1| exonuclease I [Escherichia coli B str. REL606] gi|253978095|gb|ACT43765.1| exonuclease I [Escherichia coli BL21(DE3)] gi|300461438|gb|EFK24931.1| exonuclease [Escherichia coli MS 187-1] Length = 475 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 475 >gi|21959485|gb|AAM86164.1|AE013862_9 exonuclease I [Yersinia pestis KIM 10] Length = 497 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV IT Sbjct: 28 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 88 GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 147 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 148 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 207 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 208 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 267 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKC Sbjct: 268 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 327 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+Q Sbjct: 328 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 387 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 388 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 447 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 448 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 497 >gi|327253143|gb|EGE64797.1| exodeoxyribonuclease I [Escherichia coli STEC_7v] Length = 475 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|45441270|ref|NP_992809.1| exonuclease I [Yersinia pestis biovar Microtus str. 91001] gi|108806850|ref|YP_650766.1| exonuclease I [Yersinia pestis Antiqua] gi|149366477|ref|ZP_01888511.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125] gi|161484780|ref|NP_669913.2| exonuclease I [Yersinia pestis KIM 10] gi|165924676|ref|ZP_02220508.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str. F1991016] gi|165939554|ref|ZP_02228099.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str. IP275] gi|167400240|ref|ZP_02305753.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421764|ref|ZP_02313517.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167470369|ref|ZP_02335073.1| exodeoxyribonuclease I [Yersinia pestis FV-1] gi|218928697|ref|YP_002346572.1| exonuclease I [Yersinia pestis CO92] gi|229841541|ref|ZP_04461700.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843652|ref|ZP_04463795.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195] gi|229894245|ref|ZP_04509428.1| exonuclease I [Yersinia pestis Pestoides A] gi|45436130|gb|AAS61686.1| exodeoxyribonuclease I [Yersinia pestis biovar Microtus str. 91001] gi|108778763|gb|ABG12821.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Antiqua] gi|115347308|emb|CAL20203.1| exodeoxyribonuclease I [Yersinia pestis CO92] gi|149290851|gb|EDM40926.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125] gi|165912470|gb|EDR31102.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str. IP275] gi|165923736|gb|EDR40868.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str. F1991016] gi|166960249|gb|EDR56270.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050189|gb|EDR61597.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229689260|gb|EEO81323.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195] gi|229697907|gb|EEO87954.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703643|gb|EEO90659.1| exonuclease I [Yersinia pestis Pestoides A] gi|320015573|gb|ADV99144.1| exonuclease I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 476 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV IT Sbjct: 7 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+Q Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476 >gi|215487234|ref|YP_002329665.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69] gi|312967244|ref|ZP_07781460.1| exodeoxyribonuclease I [Escherichia coli 2362-75] gi|215265306|emb|CAS09701.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69] gi|312288052|gb|EFR15956.1| exodeoxyribonuclease I [Escherichia coli 2362-75] Length = 475 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|325497751|gb|EGC95610.1| exonuclease I [Escherichia fergusonii ECD227] Length = 475 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 246/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQATFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 + E+Q WLEHR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++ Sbjct: 421 DNEQQRWLEHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 475 >gi|323940907|gb|EGB37095.1| exonuclease [Escherichia coli E482] Length = 474 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +LSGD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|332278835|ref|ZP_08391248.1| exonuclease I [Shigella sp. D9] gi|332101187|gb|EGJ04533.1| exonuclease I [Shigella sp. D9] Length = 491 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ + P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVVPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|237704470|ref|ZP_04534951.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA] gi|300974061|ref|ZP_07172435.1| exonuclease [Escherichia coli MS 200-1] gi|300986935|ref|ZP_07177911.1| exonuclease [Escherichia coli MS 45-1] gi|26108790|gb|AAN80993.1|AE016762_246 Exodeoxyribonuclease I [Escherichia coli CFT073] gi|226900836|gb|EEH87095.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA] gi|300308958|gb|EFJ63478.1| exonuclease [Escherichia coli MS 200-1] gi|300407821|gb|EFJ91359.1| exonuclease [Escherichia coli MS 45-1] gi|315285605|gb|EFU45047.1| exonuclease [Escherichia coli MS 110-3] gi|315295233|gb|EFU54568.1| exonuclease [Escherichia coli MS 153-1] gi|324015752|gb|EGB84971.1| exonuclease [Escherichia coli MS 60-1] Length = 491 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|330911851|gb|EGH40361.1| exodeoxyribonuclease 1 [Escherichia coli AA86] Length = 475 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|168751661|ref|ZP_02776683.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113] gi|168757555|ref|ZP_02782562.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401] gi|168769762|ref|ZP_02794769.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486] gi|168775542|ref|ZP_02800549.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196] gi|168782293|ref|ZP_02807300.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076] gi|168788678|ref|ZP_02813685.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869] gi|168799108|ref|ZP_02824115.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508] gi|195939352|ref|ZP_03084734.1| exonuclease I [Escherichia coli O157:H7 str. EC4024] gi|208807658|ref|ZP_03249995.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206] gi|208817101|ref|ZP_03258193.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045] gi|208818353|ref|ZP_03258673.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042] gi|209398513|ref|YP_002271254.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115] gi|254793793|ref|YP_003078630.1| exonuclease I [Escherichia coli O157:H7 str. TW14359] gi|261225144|ref|ZP_05939425.1| exonuclease I [Escherichia coli O157:H7 str. FRIK2000] gi|261257512|ref|ZP_05950045.1| exonuclease I [Escherichia coli O157:H7 str. FRIK966] gi|187768997|gb|EDU32841.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196] gi|188014326|gb|EDU52448.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113] gi|189000162|gb|EDU69148.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076] gi|189355495|gb|EDU73914.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401] gi|189361232|gb|EDU79651.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486] gi|189371612|gb|EDU90028.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869] gi|189378492|gb|EDU96908.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508] gi|208727459|gb|EDZ77060.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206] gi|208730720|gb|EDZ79410.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045] gi|208738476|gb|EDZ86158.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042] gi|209159913|gb|ACI37346.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115] gi|254593193|gb|ACT72554.1| exonuclease I [Escherichia coli O157:H7 str. TW14359] gi|320191824|gb|EFW66472.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC1212] Length = 474 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|256022296|ref|ZP_05436161.1| exonuclease I [Escherichia sp. 4_1_40B] gi|301329562|ref|ZP_07222343.1| exonuclease [Escherichia coli MS 78-1] gi|300844319|gb|EFK72079.1| exonuclease [Escherichia coli MS 78-1] Length = 474 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474 >gi|315296392|gb|EFU55692.1| exonuclease [Escherichia coli MS 16-3] Length = 474 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|218695636|ref|YP_002403303.1| exonuclease I [Escherichia coli 55989] gi|218352368|emb|CAU98142.1| exonuclease I [Escherichia coli 55989] Length = 475 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|331653435|ref|ZP_08354436.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli M718] gi|331048284|gb|EGI20360.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli M718] Length = 491 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|156974404|ref|YP_001445311.1| exonuclease I [Vibrio harveyi ATCC BAA-1116] gi|156525998|gb|ABU71084.1| hypothetical protein VIBHAR_02119 [Vibrio harveyi ATCC BAA-1116] Length = 473 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 228/469 (48%), Positives = 314/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP P+A IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I Sbjct: 186 VATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T DEL L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRAR++ TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 AQHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|323961779|gb|EGB57380.1| exonuclease [Escherichia coli H489] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|323168854|gb|EFZ54534.1| exodeoxyribonuclease I [Shigella sonnei 53G] Length = 475 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475 >gi|300898614|ref|ZP_07116941.1| exonuclease [Escherichia coli MS 198-1] gi|300357710|gb|EFJ73580.1| exonuclease [Escherichia coli MS 198-1] Length = 499 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 25 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 85 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 144 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 324 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 499 >gi|162419714|ref|YP_001607449.1| exonuclease I [Yersinia pestis Angola] gi|166009382|ref|ZP_02230280.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str. E1979001] gi|166211647|ref|ZP_02237682.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str. B42003004] gi|167424322|ref|ZP_02316075.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270486761|ref|ZP_06203835.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27] gi|294503532|ref|YP_003567594.1| exodeoxyribonuclease I [Yersinia pestis Z176003] gi|162352529|gb|ABX86477.1| exodeoxyribonuclease I [Yersinia pestis Angola] gi|165991937|gb|EDR44238.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str. E1979001] gi|166207418|gb|EDR51898.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str. B42003004] gi|167057171|gb|EDR66934.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361575|gb|ACY58296.1| exodeoxyribonuclease I [Yersinia pestis D106004] gi|262365685|gb|ACY62242.1| exodeoxyribonuclease I [Yersinia pestis D182038] gi|270335265|gb|EFA46042.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27] gi|294353991|gb|ADE64332.1| exodeoxyribonuclease I [Yersinia pestis Z176003] Length = 487 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV IT Sbjct: 18 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 78 GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 137 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 138 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 197 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 198 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 257 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKC Sbjct: 258 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 317 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+Q Sbjct: 318 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 377 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 378 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 437 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 438 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 487 >gi|222033783|emb|CAP76524.1| exodeoxyribonuclease I [Escherichia coli LF82] gi|281179112|dbj|BAI55442.1| exonuclease I [Escherichia coli SE15] gi|312946641|gb|ADR27468.1| exonuclease I [Escherichia coli O83:H1 str. NRG 857C] gi|320193300|gb|EFW67938.1| Exodeoxyribonuclease I [Escherichia coli WV_060327] Length = 475 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|331647660|ref|ZP_08348752.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli M605] gi|331043384|gb|EGI15522.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli M605] Length = 491 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|296103672|ref|YP_003613818.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058131|gb|ADF62869.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 244/467 (52%), Positives = 334/467 (71%), Gaps = 1/467 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TG Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+A GV EAEF+RRIH F+VP+TC++GYNNIRFDD +RNIFYRNFYD Y WSW Sbjct: 68 ITPQEAREKGVNEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N NSRWDLLD+MRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA ADVY Sbjct: 128 QNRNSRWDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVY 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP Sbjct: 188 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+GD+ +LDS L +RL+T D L L VP+K VH+NKCP+ Sbjct: 248 LAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKDALGDLPAVPVKLVHINKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361 L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + S++VD+QLY Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFVPSENVDAQLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL Sbjct: 368 NGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQECWL 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +HR+ + T + Y +L+ L G+Y+G+E K+ L+ AL+ Y+Q ++ Sbjct: 428 QHRRNVFTPEYLHGYAQELEMLYGQYEGNEEKQALLKALFRYVQEIV 474 >gi|168236215|ref|ZP_02661273.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733944|ref|YP_002115153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709446|gb|ACF88667.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290623|gb|EDY29978.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 476 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 249/468 (53%), Positives = 335/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QNTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|323956180|gb|EGB51931.1| exonuclease [Escherichia coli H263] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|324119041|gb|EGC12930.1| exonuclease [Escherichia coli E1167] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|193062859|ref|ZP_03043952.1| exodeoxyribonuclease I [Escherichia coli E22] gi|194428755|ref|ZP_03061291.1| exodeoxyribonuclease I [Escherichia coli B171] gi|260844621|ref|YP_003222399.1| exonuclease I [Escherichia coli O103:H2 str. 12009] gi|192931502|gb|EDV84103.1| exodeoxyribonuclease I [Escherichia coli E22] gi|194413202|gb|EDX29488.1| exodeoxyribonuclease I [Escherichia coli B171] gi|257759768|dbj|BAI31265.1| exonuclease I [Escherichia coli O103:H2 str. 12009] gi|323161928|gb|EFZ47802.1| exodeoxyribonuclease I [Escherichia coli E128010] Length = 475 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475 >gi|330829787|ref|YP_004392739.1| exodeoxyribonuclease I [Aeromonas veronii B565] gi|328804923|gb|AEB50122.1| Exodeoxyribonuclease I [Aeromonas veronii B565] Length = 471 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 212/466 (45%), Positives = 308/466 (66%), Gaps = 2/466 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F +DYETFG A DRP+QFAG+R D + I V +CKP DYLPDPEA ITG Sbjct: 7 PTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD +R YRNFYD Y +SW Sbjct: 67 ITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYSW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD+LD++RA YA P+GI+W D+G SF+L+ L + NG+ H NAHDA +DV Sbjct: 127 QNGNSRWDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTVGNGVAHANAHDALSDVL 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + L+++ +PKLF YL+D RNKN+++ LID+ M PLVHVSGMF + + ++P Sbjct: 187 ATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+ D +L S ++ +RL+T +EL L +P+K VH+NKCP+ Sbjct: 247 LAWHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCPV 306 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361 L P E + GI+ ++C ++L LLR +R++ ++N+ + S+ D D+QLY Sbjct: 307 LAPAATLTAERADELGINREQCRKSLDLLRAHPEVREKLVEVFNQEFAGSNESDPDTQLY 366 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W Sbjct: 367 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWR 426 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 H R+ +Y +L++L+ + + +E ++ +LY YL+ + Sbjct: 427 LHCSDYF-SRRLPDYVPRLEALAEQNQSNERNFAILKSLYHYLEDL 471 >gi|323948385|gb|EGB44370.1| exonuclease [Escherichia coli H120] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|238895590|ref|YP_002920325.1| exonuclease I [Klebsiella pneumoniae NTUH-K2044] gi|238547907|dbj|BAH64258.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 248/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY+G Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLEH Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLEH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++ Sbjct: 430 RRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474 >gi|300936684|ref|ZP_07151588.1| exonuclease [Escherichia coli MS 21-1] gi|300458265|gb|EFK21758.1| exonuclease [Escherichia coli MS 21-1] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474 >gi|261821314|ref|YP_003259420.1| exonuclease I [Pectobacterium wasabiae WPP163] gi|261605327|gb|ACX87813.1| Exodeoxyribonuclease I [Pectobacterium wasabiae WPP163] Length = 475 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 258/469 (55%), Positives = 330/469 (70%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLP+PEAV IT Sbjct: 6 QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 66 GITPQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DV Sbjct: 126 WQHGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L ++ +PKLFEYL+ RNKN+L LIDI M PLVHVSGMFGA+RSNT+ I Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFPLRNKNKLSALIDIPQMKPLVHVSGMFGAARSNTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKC Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSQALRERLYTRRDALTADQSAVPLKLVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359 P+L P + + E ER GID +RCL+NL LLR +++R++ ++ + ++S DVD + Sbjct: 306 PVLAPANTLRPEDAERLGIDRQRCLDNLALLRSNSDVREKVVELFAEAPAFAASDDVDLR 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL+HR+ + T R++ Y ++L L ++ D+ K + ALY Y Q ++ Sbjct: 426 WLQHRRAVFTPERLQNYLSELSELYQRHEDDKEKMTQLKALYAYAQELV 474 >gi|187733588|ref|YP_001879865.1| exonuclease I [Shigella boydii CDC 3083-94] gi|187430580|gb|ACD09854.1| exodeoxyribonuclease I [Shigella boydii CDC 3083-94] gi|332343794|gb|AEE57128.1| exodeoxyribonuclease [Escherichia coli UMNK88] Length = 475 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475 >gi|323936909|gb|EGB33192.1| exonuclease [Escherichia coli E1520] Length = 474 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFAHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|322613666|gb|EFY10606.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620237|gb|EFY17106.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623283|gb|EFY20124.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630488|gb|EFY27257.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632835|gb|EFY29580.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638832|gb|EFY35526.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640283|gb|EFY36945.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647148|gb|EFY43647.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648974|gb|EFY45417.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653880|gb|EFY50204.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660987|gb|EFY57216.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663072|gb|EFY59279.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668517|gb|EFY64672.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673348|gb|EFY69451.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679134|gb|EFY75188.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683229|gb|EFY79244.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685901|gb|EFY81891.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195188|gb|EFZ80369.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198756|gb|EFZ83856.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202400|gb|EFZ87443.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209215|gb|EFZ94151.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213844|gb|EFZ98621.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216128|gb|EGA00858.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223218|gb|EGA07560.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223733|gb|EGA08040.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231339|gb|EGA15453.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232569|gb|EGA16666.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240988|gb|EGA25028.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245593|gb|EGA29588.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247623|gb|EGA31572.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251066|gb|EGA34940.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257464|gb|EGA41155.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263357|gb|EGA46891.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266324|gb|EGA49813.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271468|gb|EGA54890.1| exonuclease I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 476 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L L VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDLAAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|323968146|gb|EGB63555.1| exonuclease [Escherichia coli M863] Length = 474 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|74312553|ref|YP_310972.1| exonuclease I [Shigella sonnei Ss046] gi|73856030|gb|AAZ88737.1| deoxyribophosphodiesterase [Shigella sonnei Ss046] Length = 475 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475 >gi|152971008|ref|YP_001336117.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955857|gb|ABR77887.1| 3' --> 5' specific exonuclease I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 474 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 248/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY+G Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLEH Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLEH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++ Sbjct: 430 RRQVFTPAFLQAYADELQILYQQYADDKEKLAQLKALWQYAQDIV 474 >gi|108812583|ref|YP_648350.1| exonuclease I [Yersinia pestis Nepal516] gi|229902976|ref|ZP_04518092.1| exonuclease I [Yersinia pestis Nepal516] gi|108776231|gb|ABG18750.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Nepal516] gi|229679886|gb|EEO75986.1| exonuclease I [Yersinia pestis Nepal516] Length = 476 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV IT Sbjct: 7 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+Q Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLTLLKALFEYAKGLVS 476 >gi|162138417|ref|YP_541284.2| exonuclease I [Escherichia coli UTI89] gi|307626441|gb|ADN70745.1| exonuclease I [Escherichia coli UM146] Length = 475 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVS MFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|16129952|ref|NP_416515.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655] gi|89108831|ref|AP_002611.1| exonuclease I [Escherichia coli str. K-12 substr. W3110] gi|170081641|ref|YP_001730961.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B] gi|238901201|ref|YP_002926997.1| exonuclease I [Escherichia coli BW2952] gi|462029|sp|P04995|EX1_ECOLI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase gi|405954|gb|AAA16417.1| exonuclease I [Escherichia coli] gi|1736685|dbj|BAA15839.1| exonuclease I [Escherichia coli str. K12 substr. W3110] gi|1788321|gb|AAC75072.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655] gi|89330228|emb|CAJ84171.1| exodeoxyribonuclease I [Escherichia coli str. K-12 substr. MG1655] gi|169889476|gb|ACB03183.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B] gi|238861050|gb|ACR63048.1| exonuclease I [Escherichia coli BW2952] gi|260448888|gb|ACX39310.1| Exodeoxyribonuclease I [Escherichia coli DH1] gi|315136644|dbj|BAJ43803.1| exonuclease I [Escherichia coli DH1] gi|315618014|gb|EFU98606.1| exodeoxyribonuclease I [Escherichia coli 3431] Length = 475 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475 >gi|260868731|ref|YP_003235133.1| exonuclease I [Escherichia coli O111:H- str. 11128] gi|257765087|dbj|BAI36582.1| exonuclease I [Escherichia coli O111:H- str. 11128] gi|323177088|gb|EFZ62678.1| exodeoxyribonuclease I [Escherichia coli 1180] Length = 474 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|157155858|ref|YP_001463362.1| exonuclease I [Escherichia coli E24377A] gi|157077888|gb|ABV17596.1| exodeoxyribonuclease I [Escherichia coli E24377A] Length = 475 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475 >gi|309797270|ref|ZP_07691665.1| exonuclease [Escherichia coli MS 145-7] gi|308119145|gb|EFO56407.1| exonuclease [Escherichia coli MS 145-7] Length = 475 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|145598704|ref|YP_001162780.1| exonuclease I [Yersinia pestis Pestoides F] gi|145210400|gb|ABP39807.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Pestoides F] Length = 476 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV IT Sbjct: 7 QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300 P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKC Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 P+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+Q Sbjct: 307 PVLAPAKTLLPENSDRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q Sbjct: 367 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 WL+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++ Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476 >gi|271500784|ref|YP_003333809.1| exodeoxyribonuclease I [Dickeya dadantii Ech586] gi|270344339|gb|ACZ77104.1| Exodeoxyribonuclease I [Dickeya dadantii Ech586] Length = 476 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 258/468 (55%), Positives = 332/468 (70%), Gaps = 2/468 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F I+DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLPDPEAV ITG Sbjct: 8 PTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFTVIGEPVVIYCQPADDYLPDPEAVMITG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A + GV EAEF+ IH+ FSVP TCI+GYNNIRFDD SRN+FYRNF+D Y +SW Sbjct: 68 ITPQVAQKRGVREAEFANHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFFDPYAYSW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNSRWDLLD++RA YA PDGI WP DDG SFKL+ L ANG+EH AHDA +DVY Sbjct: 128 QQGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFKLEHLTRANGVEHTQAHDAMSDVY 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P Sbjct: 188 ATIAMARLLKQAQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 +AWHP +++VI C+L+GD++ LD+ +L RL+T + L + PVPIK VH+NKCP Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLALDADELRTRLYTRRELLAEDESPVPIKLVHINKCP 307 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L P + E ER GID + CL NL LLRQ +++R++ A++ P +++DVD QL Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQL 367 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q W Sbjct: 368 YDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L HR+++ T R++ Y + L L ++ GDE K + AL+ Y Q ++ Sbjct: 428 LAHRREVFTAERLQNYFDTLDQLYQQHDGDEKKTTQLKALFAYAQQLL 475 >gi|331673547|ref|ZP_08374310.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA280] gi|331068820|gb|EGI40212.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA280] Length = 491 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|28898075|ref|NP_797680.1| exonuclease I [Vibrio parahaemolyticus RIMD 2210633] gi|153836551|ref|ZP_01989218.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810] gi|260366376|ref|ZP_05778815.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030] gi|260878424|ref|ZP_05890779.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034] gi|260897003|ref|ZP_05905499.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466] gi|28806289|dbj|BAC59564.1| exodeoxyribonuclease I [Vibrio parahaemolyticus RIMD 2210633] gi|149750149|gb|EDM60894.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810] gi|308087707|gb|EFO37402.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466] gi|308091094|gb|EFO40789.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034] gi|308113162|gb|EFO50702.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030] Length = 473 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 225/469 (47%), Positives = 312/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA+++G+ E EF +IH S P T +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ NGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|153833726|ref|ZP_01986393.1| exodeoxyribonuclease I [Vibrio harveyi HY01] gi|148870005|gb|EDL68965.1| exodeoxyribonuclease I [Vibrio harveyi HY01] Length = 473 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 229/469 (48%), Positives = 314/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T DEL L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRAR++ TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 AQHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|89330230|emb|CAJ84172.1| exodeoxyribonuclease I [Escherichia coli K-12] Length = 475 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HD ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDVMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475 >gi|301648514|ref|ZP_07248238.1| exonuclease [Escherichia coli MS 146-1] gi|301073417|gb|EFK88223.1| exonuclease [Escherichia coli MS 146-1] Length = 491 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+AL L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIALAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTVKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|301050038|ref|ZP_07196952.1| exonuclease [Escherichia coli MS 185-1] gi|300298222|gb|EFJ54607.1| exonuclease [Escherichia coli MS 185-1] Length = 491 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|218705553|ref|YP_002413072.1| exonuclease I [Escherichia coli UMN026] gi|293405493|ref|ZP_06649485.1| sbcB [Escherichia coli FVEC1412] gi|298381181|ref|ZP_06990780.1| exodeoxyribonuclease I [Escherichia coli FVEC1302] gi|218432650|emb|CAR13545.1| exonuclease I [Escherichia coli UMN026] gi|291427701|gb|EFF00728.1| sbcB [Escherichia coli FVEC1412] gi|298278623|gb|EFI20137.1| exodeoxyribonuclease I [Escherichia coli FVEC1302] Length = 475 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 475 >gi|324114057|gb|EGC08030.1| exonuclease [Escherichia fergusonii B253] Length = 474 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 244/468 (52%), Positives = 329/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++ Sbjct: 427 LEHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474 >gi|307312423|ref|ZP_07592057.1| Exodeoxyribonuclease I [Escherichia coli W] gi|306907594|gb|EFN38097.1| Exodeoxyribonuclease I [Escherichia coli W] gi|315061286|gb|ADT75613.1| exonuclease I [Escherichia coli W] gi|323378134|gb|ADX50402.1| Exodeoxyribonuclease I [Escherichia coli KO11] Length = 475 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ + +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|117624215|ref|YP_853128.1| exonuclease I [Escherichia coli APEC O1] gi|115513339|gb|ABJ01414.1| exonuclease I [Escherichia coli APEC O1] Length = 491 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 491 >gi|331683697|ref|ZP_08384293.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli H299] gi|331078649|gb|EGI49851.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli H299] Length = 474 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|323172599|gb|EFZ58233.1| exodeoxyribonuclease I [Escherichia coli LT-68] Length = 475 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFMPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475 >gi|331658092|ref|ZP_08359054.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA206] gi|331056340|gb|EGI28349.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA206] Length = 474 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|323977819|gb|EGB72905.1| exonuclease [Escherichia coli TW10509] Length = 474 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP PEAV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPEAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|218549424|ref|YP_002383215.1| exonuclease I [Escherichia fergusonii ATCC 35469] gi|218356965|emb|CAQ89597.1| exonuclease I [Escherichia fergusonii ATCC 35469] Length = 474 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 244/468 (52%), Positives = 329/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++ Sbjct: 427 LEHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474 >gi|312973748|ref|ZP_07787920.1| exodeoxyribonuclease I [Escherichia coli 1827-70] gi|310332343|gb|EFP99578.1| exodeoxyribonuclease I [Escherichia coli 1827-70] Length = 475 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGM GA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|91072872|gb|ABE07753.1| exodeoxyribonuclease I [Escherichia coli UTI89] Length = 491 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVS MFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491 >gi|283785833|ref|YP_003365698.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168] gi|282949287|emb|CBG88898.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168] Length = 474 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 240/468 (51%), Positives = 327/468 (69%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D + + EVF+CKPADDYLP P AV +T Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAALRTDGDFNVVGEPEVFYCKPADDYLPQPGAVLVT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WS Sbjct: 67 GITPQEAREKGENEAAFAARIHALFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAQLVKSRQPRLFDYLYTHRNKDKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISSLLELDSDTLRERLYTAKADLGDNAAIPLKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR +RD+ AI+ + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKAVAIFAEAEPFIPSDNVDTQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TL E E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPQNLPALDITFVDKRIEKLLFNYRARNFPGTLDEAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L EY ++ K+ L+ +L++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQSYADELQRLYQEYGDNKEKQALLKSLWQYAEEIV 474 >gi|323951765|gb|EGB47639.1| exonuclease [Escherichia coli H252] Length = 474 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 474 >gi|157267360|ref|NP_288516.2| exonuclease I [Escherichia coli O157:H7 str. EDL933] gi|169822936|gb|AAG57070.2|AE005426_12 exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase [Escherichia coli O157:H7 str. EDL933] Length = 475 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYAXDKEKVALLKALWQYAEXJV 475 >gi|91223947|ref|ZP_01259211.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01] gi|91191439|gb|EAS77704.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01] Length = 473 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAG R D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKTVQEGLSEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R K +L L+DI NMTPL+HVSGM G T+ I Sbjct: 186 VATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|323130390|gb|ADX17820.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 476 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 248/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VPIK VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPIKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|218690073|ref|YP_002398285.1| exonuclease I [Escherichia coli ED1a] gi|218427637|emb|CAR08548.2| exonuclease I [Escherichia coli ED1a] Length = 475 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 241/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP ++++I +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475 >gi|62180647|ref|YP_217064.1| exonuclease I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167551009|ref|ZP_02344764.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168259635|ref|ZP_02681608.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818244|ref|ZP_02830244.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443671|ref|YP_002041334.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197247769|ref|YP_002147025.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243454|ref|YP_002216153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224583437|ref|YP_002637235.1| exonuclease I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913451|ref|ZP_04657288.1| exonuclease I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|62128280|gb|AAX65983.1| exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194402334|gb|ACF62556.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197211472|gb|ACH48869.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197937970|gb|ACH75303.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205323967|gb|EDZ11806.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205344805|gb|EDZ31569.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351000|gb|EDZ37631.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224467964|gb|ACN45794.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715118|gb|EFZ06689.1| Exonuclease, RNase T and DNA polymerase III [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326623899|gb|EGE30244.1| LPS-assembly lipoprotein RlpB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 476 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|260901800|ref|ZP_05910195.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037] gi|308108118|gb|EFO45658.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037] Length = 473 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 225/469 (47%), Positives = 312/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA+++G+ E EF +IH S P T +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ NGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAENIGIDRQKCLDNLALLRQYPEIREKLIGLFSIERQFEKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|168229383|ref|ZP_02654441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168466281|ref|ZP_02700151.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194472204|ref|ZP_03078188.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205353209|ref|YP_002227010.1| exonuclease I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857502|ref|YP_002244153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194458568|gb|EDX47407.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631242|gb|EDX49802.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205272990|emb|CAR37938.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205335677|gb|EDZ22441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|206709305|emb|CAR33645.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326628296|gb|EGE34639.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 476 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 247/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|204929131|ref|ZP_03220274.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321675|gb|EDZ06874.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 476 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAETEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|149912138|ref|ZP_01900724.1| putative exonuclease I [Moritella sp. PE36] gi|149804786|gb|EDM64828.1| putative exonuclease I [Moritella sp. PE36] Length = 480 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 237/468 (50%), Positives = 311/468 (66%), Gaps = 2/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYETFG +LDRP+QFAG+R D + I ++F+C+ +DDYLP PEA IT Sbjct: 12 QPTFYWHDYETFGLSPSLDRPSQFAGIRTDMDFNVIGEPDMFYCRQSDDYLPSPEATLIT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQK +GV EAEFS+RI FS NTCIIGYNNIRFDD +RNIFYRNFYD Y + Sbjct: 72 GITPQKTQAEGVNEAEFSKRIEAQFSHKNTCIIGYNNIRFDDEVTRNIFYRNFYDPYAHT 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWD++D+MRA YA P+GI WP DDG S +L+ L ANGIEH NAHDA +DV Sbjct: 132 WKDGNSRWDIIDLMRACYALRPEGIVWPENDDGLPSMRLELLTKANGIEHANAHDATSDV 191 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++EK+PKLF++L++ R+K ++ LIDI NMTPLVHVSGMFGA R T+ + Sbjct: 192 YATIAMAKLVKEKQPKLFDFLFNLRSKRKVESLIDIINMTPLVHVSGMFGADRGFTSWVV 251 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++VI +L+ D+ +L + +L +RL+T +L L P+P+K +H+NKCP Sbjct: 252 PLAWHPTNNNAVIVADLAQDITPLLELSADELRERLYTPKKDLGDLAPIPLKLIHINKCP 311 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 +L P E+ ER GID CL NL L++ LR+ +Y S +VD+ + Sbjct: 312 VLAPAKTLLPENAERLGIDRNACLANLKRLKESATLRENVVGVYQVDREYPKSNNVDAMI 371 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ + + TAPEQL L L SD R ELFFRYRARNFPH LS E+Q W Sbjct: 372 YDGFFSAGDKANFEILRETAPEQLVGLQLKISDERFNELFFRYRARNFPHLLSMPEQQKW 431 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L H + +L Y ++L +L+ E DE K L+ LY Y Q +I Sbjct: 432 LNHCRSVL-EDSAPAYFDRLDALAIENSHDERKMKLLQQLYLYGQTII 478 >gi|218554573|ref|YP_002387486.1| exonuclease I [Escherichia coli IAI1] gi|218361341|emb|CAQ98929.1| exonuclease I [Escherichia coli IAI1] Length = 475 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 240/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKP DDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP ++++I +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475 >gi|16765397|ref|NP_461012.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990978|ref|ZP_02572077.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242135|ref|ZP_02667067.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450582|ref|YP_002046116.1| exonuclease I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|16420598|gb|AAL20971.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408886|gb|ACF69105.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205330564|gb|EDZ17328.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338443|gb|EDZ25207.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261247282|emb|CBG25107.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994119|gb|ACY89004.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158628|emb|CBW18140.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913058|dbj|BAJ37032.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224713|gb|EFX49776.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332989002|gb|AEF07985.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 476 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 247/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|282600282|ref|ZP_05973706.2| exodeoxyribonuclease I [Providencia rustigianii DSM 4541] gi|282565948|gb|EFB71483.1| exodeoxyribonuclease I [Providencia rustigianii DSM 4541] Length = 479 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 250/469 (53%), Positives = 321/469 (68%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + I+ EVF+CKP DDYLP PEAV IT Sbjct: 11 QPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCKPTDDYLPQPEAVMIT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A +GV EAEF++RIHQ FS PNTCI+GYNNIRFDD +RNIFYRNFYD Y +S Sbjct: 71 GITPQIAQANGVNEAEFAKRIHQSFSTPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLD +RA +A P+GI WP DDG S +L+ L ANG+ H NAHDA +DV Sbjct: 131 WQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVAHENAHDAMSDV 190 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + L+++ +P++F+Y Y RNKN++ +LIDI MTPLVHVSGMFGA RS +L+A Sbjct: 191 LATINMAKLLKQAQPRMFDYFYQLRNKNKVSQLIDIVEMTPLVHVSGMFGALRSYVSLVA 250 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP K++VI C+LS DM L++ +L +RL+T EL +PVPIK VH+NKCP Sbjct: 251 PLAWHPDNKNAVIMCDLSADMSPLLTLNADELRERLYTPKAELGDALPVPIKLVHINKCP 310 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P + ER GID CL NL +LR+ ++R++ I++ S DVD Q+ Sbjct: 311 ILAPEKTLRTVDAERTGIDRDLCLRNLEILRKNPDVRNKLIEIFSVDQQFEESNDVDRQI 370 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y GFF+ DR MD I TAP+ L L+L F D+R+ ELFFRY+ARN+P TLS E+Q W Sbjct: 371 YSGFFSPSDRSTMDIIRETAPQNLPGLDLSFEDKRMKELFFRYKARNYPATLSYDEQQRW 430 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR+ T +R+ EY ++Q L + DE + + AL Y + Sbjct: 431 LQHRRDYFTEARLTEYMQQIQLLMDIHHEDEKRCQQLKALVSYAADLAS 479 >gi|331668711|ref|ZP_08369559.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA271] gi|331063905|gb|EGI35816.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA271] Length = 474 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 241/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ + +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474 >gi|16760997|ref|NP_456614.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141307|ref|NP_804649.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413034|ref|YP_150109.1| exonuclease I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361958|ref|YP_002141595.1| exonuclease I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213053400|ref|ZP_03346278.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421859|ref|ZP_03354925.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425574|ref|ZP_03358324.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648908|ref|ZP_03378961.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829232|ref|ZP_06546844.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25289114|pir||AF0763 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503295|emb|CAD02428.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Typhi] gi|29136934|gb|AAO68498.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127291|gb|AAV76797.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093435|emb|CAR58890.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 476 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 247/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|311278993|ref|YP_003941224.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1] gi|308748188|gb|ADO47940.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1] Length = 474 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 252/474 (53%), Positives = 330/474 (69%), Gaps = 6/474 (1%) Query: 1 MTNH-----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 M F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P Sbjct: 1 MQETQSPPGFLFHDYETFGTSPSLDRPAQFAALRTDGDFNVIGEPEVFYCKPADDYLPQP 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +AV ITGITPQ+AL G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFY Sbjct: 61 QAVLITGITPQEALAKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFY 120 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 D Y WSW N NSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANGIEH NAH Sbjct: 121 DPYAWSWQNHNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAH 180 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 DA ADVYAT+A+ L++ ++P+LF+YLY YRNKN+L LID+ M PLVHVSGMFGA R Sbjct: 181 DAMADVYATIAMAQLVKSRQPRLFDYLYTYRNKNKLATLIDVPQMKPLVHVSGMFGAWRG 240 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 NT+ IAP+AWHP +++VI +L+GDM +L + +L RL+T+ L L VP+K V Sbjct: 241 NTSWIAPLAWHPDNRNAVIVVDLAGDMSPLLELTADELRDRLYTAKASLGDLAAVPVKLV 300 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQ 354 HLNKCP+L + + E +R GI+ ++CL+NL LLR +RD+ AI+ SQ Sbjct: 301 HLNKCPVLAQANTLRPEDADRLGINRQQCLDNLKLLRDNPQVRDKVVAIFADAAPFVPSQ 360 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 +VD+QLY+GFF+D DR M +L T P L L+L F+D R+ +L F YRARNFP TL + Sbjct: 361 NVDAQLYNGFFSDADRAAMKILLETEPRNLPALDLTFADTRIEKLLFNYRARNFPGTLDD 420 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WL+HR+++ T ++ Y ++LQ LS +Y D+ K L+ L++Y Q ++ Sbjct: 421 AEQQRWLQHRREVFTPEFLQAYADELQLLSQQYAEDKAKLALLKTLWQYAQDIV 474 >gi|329298840|ref|ZP_08256176.1| exonuclease I [Plautia stali symbiont] Length = 473 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 251/467 (53%), Positives = 329/467 (70%), Gaps = 1/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +DYETFG+ +LDRPAQFAG+R D+ + + +VF+C+ ADDYLP PEAV ITGI Sbjct: 7 TFLFHDYETFGKSPSLDRPAQFAGLRTDKAFNAVGEPQVFYCQLADDYLPQPEAVMITGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A GV E EF++RIH FS P TC+IGYNN+RFDD +RNIFYRNF D Y WSW Sbjct: 67 TPQVANARGVQEVEFAQRIHALFSEPQTCVIGYNNVRFDDEVTRNIFYRNFIDPYGWSWQ 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+ H AHDA +DVYA Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTQANGVAHEQAHDAMSDVYA 186 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 TLA+ L++EK+PKLFE+L+ +RNK +L LIDI M PLVHVSGMFGA+R NT+ I P+ Sbjct: 187 TLAMAKLVQEKQPKLFEFLFTHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 246 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 AWHP K+++I +L+GDM L +L +RL+T H +L L VPIK VH+NKCP+L Sbjct: 247 AWHPDNKNALIVADLAGDMTPLLTLSPDELRERLYTRHSDLGDLPAVPIKLVHINKCPVL 306 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362 P + + E ER GID + CL NL LLRQ +R+ ++ + + S+DVD+QLYD Sbjct: 307 APANTLRPEDAERLGIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFTPSEDVDAQLYD 366 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 GFF+D DR M+ + +T P+ L L+L F D+R+ +L FRYRARNFP TL +KE+Q WL+ Sbjct: 367 GFFSDADRAGMNILRQTPPQNLPALDLTFEDKRIAKLLFRYRARNFPGTLDDKEQQRWLQ 426 Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ L R++ + +L+SL+ ++GD K + ALY Y Q ++ Sbjct: 427 HCREQLNAERVKAFLLELESLASLHEGDAEKMAQLKALYLYAQELVS 473 >gi|183599505|ref|ZP_02960998.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827] gi|188021751|gb|EDU59791.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827] Length = 475 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 246/469 (52%), Positives = 316/469 (67%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + I+ EVF+C P DDYLP PEAV IT Sbjct: 7 QPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPTDDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF++RIHQ FS PNTCI+GYNNIRFDD +RNIFYRNFYD Y +S Sbjct: 67 GITPQLALAQGVNEAEFAKRIHQQFSQPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLD +RA +A P+GI WP D+G S +L+ L ANGI H NAHDA +DV Sbjct: 127 WQQGNSRWDLLDTVRACFALRPEGIIWPENDEGLPSMRLEHLTKANGIAHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + L++ +P++F Y Y RNKN++ +LIDI +MTPLVHVSGMFGA RS +L+A Sbjct: 187 LATINMAKLLKAAQPRMFNYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYISLVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI C+L+ D+ +L L +RL+T EL G +PVPIK VH+NKCP Sbjct: 247 PLAWHPDNRNAVIMCDLAADISPLVNLPVETLRERLYTPKTELDGELPVPIKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 IL P + E ER G+D CL NL +LR+ ++R + I+ + DVD+Q+ Sbjct: 307 ILAPEKTLRIEDAERTGVDRDLCLRNLEILRKHPDIRHKVIEIFAQAQPFEEPNDVDAQI 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y GFF+ DR MD I T + L L+L F D R+ ELFFRY+ARN+P TLS E+Q W Sbjct: 367 YSGFFSSSDRSTMDIIRETPEKNLPALDLTFEDPRMKELFFRYKARNYPSTLSYDEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L+HR+ T SR+ EY ++SL E++ D + + AL Y + Sbjct: 427 LQHRRDYFTESRLMEYMQSIESLMIEHQNDVERCKQLKALVNYAAELAS 475 >gi|328472968|gb|EGF43816.1| exonuclease I [Vibrio parahaemolyticus 10329] Length = 473 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA+++G+ E EF +I S P T +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAMQEGLSEPEFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA +A P+GI+WP +DG TSFKL+ L++ NGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|283832563|ref|ZP_06352304.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220] gi|291072232|gb|EFE10341.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220] Length = 474 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 247/465 (53%), Positives = 329/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP PEAV ITGIT Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW N Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNPAVPVKLVHINKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + E +R GI+ + CL+NL LLR+ +RD+ AI+ + S +VD+QLY+G Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLNLLRENPQVRDKVVAIFADAEPFAPSDNVDTQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL+H Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWLDH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T ++ Y N+LQ+LS +Y ++ K L+ +L++Y Q ++ Sbjct: 430 RRQVFTPEFLQNYANELQTLSQQYADNKEKLMLLKSLWQYAQEIV 474 >gi|293446370|ref|ZP_06662792.1| exodeoxyribonuclease I [Escherichia coli B088] gi|291323200|gb|EFE62628.1| exodeoxyribonuclease I [Escherichia coli B088] Length = 475 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQCWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|269966310|ref|ZP_06180397.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B] gi|269829049|gb|EEZ83296.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B] Length = 473 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DR +QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPAKDRSSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R K +L L+DI NMTPL+HVSGM G T+ I Sbjct: 186 VATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ + S+IEEY L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473 >gi|157145042|ref|YP_001452361.1| exonuclease I [Citrobacter koseri ATCC BAA-895] gi|157082247|gb|ABV11925.1| hypothetical protein CKO_00773 [Citrobacter koseri ATCC BAA-895] Length = 474 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 243/467 (52%), Positives = 328/467 (70%), Gaps = 1/467 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFASIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+A G EA+F+RRIH F+VP TC++GYNN+RFDD +RNI YRNFYD Y WSW Sbjct: 68 ITPQEARDKGENEADFARRIHSLFTVPKTCVVGYNNVRFDDEVTRNILYRNFYDPYAWSW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVY 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVH+SGMFGA R NT+ +AP Sbjct: 188 ATIAMAQLVKSRQPRLFDYLYTHRNKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAP 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+GDM +LDS L +RL+T+ +L VP+K VH+NKCP+ Sbjct: 248 LAWHPENRNAVIMVDLAGDMSPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361 L + + E +R GI+ + CL+NL +LR +RD+ AI+ + + S++VD+QLY Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKVVAIFAEAEPFTPSENVDAQLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDETEQQRWL 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 EHR+++ T ++ Y +LQ L +Y D+ K L+ +L++Y + ++ Sbjct: 428 EHRRQVFTPEFLQRYAEELQMLYQQYADDKEKLALLKSLWQYAEEIV 474 >gi|200388584|ref|ZP_03215196.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605682|gb|EDZ04227.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 476 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDTEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|50121489|ref|YP_050656.1| exonuclease I [Pectobacterium atrosepticum SCRI1043] gi|49612015|emb|CAG75464.1| exodeoxyribonuclease I [Pectobacterium atrosepticum SCRI1043] Length = 475 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 257/469 (54%), Positives = 327/469 (69%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLP+PEAV IT Sbjct: 6 QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 66 GITPQIALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N NSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DV Sbjct: 126 WQNSNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ I Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKC Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSDALRERLYTRRDALTADQSAVPLKLVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359 P+L P + + E R GID +RCL+NL LLR ++R++ A++ + ++S DVD + Sbjct: 306 PVLAPANTLRPEDAARLGIDRQRCLDNLALLRNNADIREKVVALFAEVPAFAASDDVDLR 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL+HR+ + T R++ Y ++L L ++ D+ K + ALY Y Q ++ Sbjct: 426 WLQHRRAVFTPERLQSYLSELSDLYQLHEDDKEKMTQLKALYAYAQDLV 474 >gi|331663511|ref|ZP_08364421.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA143] gi|331059310|gb|EGI31287.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli TA143] Length = 474 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 239/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L P+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAFPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 474 >gi|161613258|ref|YP_001587223.1| exonuclease I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362622|gb|ABX66390.1| hypothetical protein SPAB_00968 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 476 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 247/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y ++ K GL+ +L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAENKTKLGLLKSLWQYATEIV 476 >gi|309787899|ref|ZP_07682509.1| exodeoxyribonuclease I [Shigella dysenteriae 1617] gi|308924298|gb|EFP69795.1| exodeoxyribonuclease I [Shigella dysenteriae 1617] Length = 475 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA Y P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPETLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|284922012|emb|CBG35090.1| exodeoxyribonuclease I [Escherichia coli 042] Length = 491 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGKPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 197 HDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 491 >gi|12084680|pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity Is Achieved gi|166007143|pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom Resolution gi|193885301|pdb|3C94|A Chain A, ExoiSSB-Ct Complex gi|193885304|pdb|3C95|A Chain A, Exonuclease I (Apo) gi|284055587|pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With Inhibitor Bcbp gi|284055600|pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH Inhibitor Cfam Length = 482 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIV 475 >gi|86146813|ref|ZP_01065133.1| exonuclease I [Vibrio sp. MED222] gi|218709702|ref|YP_002417323.1| exonuclease I [Vibrio splendidus LGP32] gi|85835463|gb|EAQ53601.1| exonuclease I [Vibrio sp. MED222] gi|218322721|emb|CAV18897.1| Exodeoxyribonuclease I [Vibrio splendidus LGP32] Length = 474 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 226/470 (48%), Positives = 307/470 (65%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT Sbjct: 6 QPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQKA G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 RITPQKAASQGLPEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA++A P+GI WP ++G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PK+F+YLY+ R+K +L L+DI NMTPL+HVSGMFG + T+ I Sbjct: 186 IATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ D +LD+ +L RL+T EL + +PVPIK V LNKC Sbjct: 246 PMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELSEDELPVPIKLVQLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ E GID ++CL+NL LLR+ +R++ +Y + S DVD+ Sbjct: 306 PILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTH 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ M+ I T P L+ L++ FSD R+ L FRYRARNFP TL E E+ Sbjct: 366 LYDGFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARNFPWTLDEAEQLK 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H ++ R+EEY L++L+ E++ DE K ++ A+Y+Y++ + Sbjct: 426 WANHCRE-FYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS 474 >gi|293415305|ref|ZP_06657948.1| exodeoxyribonuclease I [Escherichia coli B185] gi|291432953|gb|EFF05932.1| exodeoxyribonuclease I [Escherichia coli B185] Length = 475 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 242/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDR AQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRSAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|237732065|ref|ZP_04562546.1| exonuclease I [Citrobacter sp. 30_2] gi|226907604|gb|EEH93522.1| exonuclease I [Citrobacter sp. 30_2] Length = 474 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 246/465 (52%), Positives = 329/465 (70%), Gaps = 1/465 (0%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP PEAV ITGIT Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW N Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHTNAHDAMADVYAT 189 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 WHP +++VI +L+GD+ +LDS L +RL+TS +L VP+K VH+NKCP+L Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCPVLA 309 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363 + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + S +VD+QLY+G Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKVLRENPQIRDKVVAIFADAEPFTPSDNVDAQLYNG 369 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 FF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL+H Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWLDH 429 Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 R+++ T +++Y N+LQ LS +Y ++ K L+ +L++Y + ++ Sbjct: 430 RRQVFTPEFLQDYANELQLLSQQYADNKEKLMLLKSLWQYAEEIV 474 >gi|37679656|ref|NP_934265.1| exonuclease I [Vibrio vulnificus YJ016] gi|37198401|dbj|BAC94236.1| exonuclease I [Vibrio vulnificus YJ016] Length = 473 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 230/469 (49%), Positives = 311/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCP Sbjct: 246 PLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ L Sbjct: 306 ILAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W Sbjct: 366 YDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ SRIEEY L++L E++ DE K ++ ++Y Y + +I Sbjct: 426 ANHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS 473 >gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326] gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326] Length = 474 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 230/470 (48%), Positives = 307/470 (65%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF +IH+ ++PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA P+G++WP D+G SFKL+ L+ ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGVEWPENDEGFISFKLEHLSKANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + I+ +PKLF+Y R+K +L L+DI NMTPL+HVSGM G + T+ + Sbjct: 186 IATIEMAKKIKAAQPKLFDYFLSMRHKRKLNDLVDIVNMTPLMHVSGMLGKECNYTSWMV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ D + DLD QL +RL+T H EL + +PVP+K VHLNKC Sbjct: 246 PLAWHPTNQNAVIMVDLAKDPQPLLDLDVEQLNQRLYTKHSELAEDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ E GID +CL+NL LLRQ +R++ +Y+ + + DVD+ Sbjct: 306 PILAPAKTLTAENAETIGIDRDQCLKNLALLRQHPEVREKLIGLYSIEREYAKDNDVDAM 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ MD I T P L+ L++ F+D R+ L FRYRARNFP +L E E+Q Sbjct: 366 LYDGFFSPADKASMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWSLDESEQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H ++ SRIEEY L++L E++ DE K ++ ++Y+Y+Q ++ Sbjct: 426 WANHCREYF-ESRIEEYMLNLENLVHEHESDEKKLAILKSVYQYVQKLVS 474 >gi|227329384|ref|ZP_03833408.1| exonuclease I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 475 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 254/469 (54%), Positives = 329/469 (70%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ A DRPAQFAGVR D + I V +C+P+DDYLP+PEAV IT Sbjct: 6 QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 66 GITPQVALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DV Sbjct: 126 WQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L ++ +PKLF+YL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + Sbjct: 186 YATIAMAKLFKQAQPKLFDYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKC Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSEALRERLYTRRDALEANQSAVPLKLVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQDVDSQ 359 P+L P + + E ER GID +RCL+NL +LR ++R++ + ++S DVD + Sbjct: 306 PVLAPANTLRPEDAERLGIDRQRCLDNLAVLRNNASVREKVVELFADASAFAASDDVDLR 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL+HR+ + T ++ Y ++L +L ++ D+ K + ALY Y Q ++ Sbjct: 426 WLQHRRAVFTPEHLQSYLSELNNLYQLHEDDKEKMAQLKALYAYAQELV 474 >gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546] gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546] Length = 474 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 231/467 (49%), Positives = 308/467 (65%), Gaps = 3/467 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF +IH+ ++PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA P+GI+WP ++G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGIEWPENEEGFISFKLESLSVANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVAWHP +++VI +L+ D + DLD+ QL +RL+T H +L +PVP+K V LNKC Sbjct: 246 PVAWHPTNQNAVICVDLAKDPQALLDLDTEQLNQRLYTKHSDLGPDELPVPVKLVQLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ E+ GID ++CLENL LLR+ +R++ +Y + SQDVDS Sbjct: 306 PILAPAKTLTAENAEKIGIDREKCLENLALLRKHPEIREKLIGVYAIEREYEKSQDVDSM 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ MD I T P L+ L++ F+D R+ L FRYRARNFP TL E E+Q Sbjct: 366 LYDGFFSPADKAAMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWTLDESEQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 W H + SRIE+Y L++L+ E++ D+ K ++ ++Y+Y+Q Sbjct: 426 WALHCRDYF-ESRIEDYMLNLENLAHEHESDQKKMAILKSIYQYVQK 471 >gi|82543387|ref|YP_407334.1| exonuclease I [Shigella boydii Sb227] gi|81244798|gb|ABB65506.1| deoxyribophosphodiesterase [Shigella boydii Sb227] gi|320185776|gb|EFW60530.1| Exodeoxyribonuclease I [Shigella flexneri CDC 796-83] gi|332097090|gb|EGJ02073.1| exodeoxyribonuclease I [Shigella boydii 3594-74] Length = 474 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMPPLVHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + + +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474 >gi|170769782|ref|ZP_02904235.1| exodeoxyribonuclease I [Escherichia albertii TW07627] gi|170121396|gb|EDS90327.1| exodeoxyribonuclease I [Escherichia albertii TW07627] Length = 475 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 334/475 (70%), Gaps = 7/475 (1%) Query: 1 MTNH------FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N+ F+ +DYETFG ALDRPAQFA +R D ++ I E+F+CKPADDYLP Sbjct: 1 MMNNGKHQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEIFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VPNTCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFATRIHSLFTVPNTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAIAKLVKTRQPRLFDYLYTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 ++VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQSYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|148975895|ref|ZP_01812684.1| exonuclease I [Vibrionales bacterium SWAT-3] gi|145964640|gb|EDK29893.1| exonuclease I [Vibrionales bacterium SWAT-3] Length = 474 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 227/470 (48%), Positives = 312/470 (66%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT Sbjct: 6 QPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQKA+ G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 RITPQKAVSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA++A PDGI WP ++G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PK+F+YLY+ R+K +L +L+DI NMTPL+HVSGMFG + T+ I Sbjct: 186 IATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ D +LD+ +L +RL+T +L + +PVPIK V LNKC Sbjct: 246 PMAWHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSDLNEDELPVPIKLVQLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ E GID ++CL+NL +LR+ +R++ +Y + S DVD+Q Sbjct: 306 PILAPAKTLTAENAETIGIDRQQCLKNLAILREHPEIREKLIGLYSQEREYEKSDDVDTQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ M+ I T P L+ L++ FSD R+ L FRYRARNFP TL E E+ Sbjct: 366 LYDGFFSPADKTAMNIIRETDPNNLAVLDITFSDERIKPLLFRYRARNFPWTLDESEQLK 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H ++ SR+EEY L++L+ E++ DE K ++ A+Y+Y++ + Sbjct: 426 WANHCRE-FYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS 474 >gi|82777457|ref|YP_403806.1| exonuclease I [Shigella dysenteriae Sd197] gi|81241605|gb|ABB62315.1| exonuclease I [Shigella dysenteriae Sd197] Length = 475 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA Y P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++ Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475 >gi|320156592|ref|YP_004188971.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O] gi|319931904|gb|ADV86768.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O] Length = 473 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 230/469 (49%), Positives = 311/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCP Sbjct: 246 PLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ L Sbjct: 306 ILAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W Sbjct: 366 YDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ SRIEEY L++L E++ DE K ++ ++Y Y + +I Sbjct: 426 ANHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS 473 >gi|27366077|ref|NP_761605.1| exonuclease I [Vibrio vulnificus CMCP6] gi|27362277|gb|AAO11132.1| Exodeoxyribonuclease I [Vibrio vulnificus CMCP6] Length = 473 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 229/469 (48%), Positives = 310/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP+QFA VR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCP Sbjct: 246 PLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ L Sbjct: 306 ILAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTML 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W Sbjct: 366 YDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H ++ SRIEEY L++L E++ DE K ++ ++Y Y + +I Sbjct: 426 ANHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS 473 >gi|331677916|ref|ZP_08378591.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli H591] gi|331074376|gb|EGI45696.1| exodeoxyribonuclease I (Exonuclease I) (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia coli H591] Length = 491 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 241/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 17 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 77 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVH+SGMFGA R Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR 256 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ L VP+K Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTNLGDNAAVPVKL 316 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + + Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPT 376 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 491 >gi|59712089|ref|YP_204865.1| exonuclease I [Vibrio fischeri ES114] gi|59480190|gb|AAW85977.1| exonuclease I [Vibrio fischeri ES114] Length = 474 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 222/469 (47%), Positives = 302/469 (64%), Gaps = 3/469 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA ITG Sbjct: 7 PSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WSW Sbjct: 67 ITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWDLLDVMRA+YA P+GI WP ++G SFKL++L++ANGIEH NAHDA ADV Sbjct: 127 QNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADVI 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ L +++ +PK+F YL RNK + LIDI MTPL+HVSGMFG R N + I P Sbjct: 187 ATIELAKKVKQAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIVP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VAWHP ++VI +L+ D VF +L+ +L +R++T EL +PVP+K VHLNKCP Sbjct: 247 VAWHPTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLVHLNKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 +L P E+ +D + CL NL ++R+ +R + +Y+ +P S +VD+ L Sbjct: 307 VLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTLL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ +D I ++ PEQL +D R+ L FRYRARNFPHTL+E E+ W Sbjct: 367 YDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H + ++ + +Y+ ++L E +G++ K ++ A+Y Y+Q +I Sbjct: 427 HAHLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLIS 474 >gi|163801030|ref|ZP_02194930.1| exodeoxyribonuclease I [Vibrio sp. AND4] gi|159175379|gb|EDP60176.1| exodeoxyribonuclease I [Vibrio sp. AND4] Length = 473 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 224/469 (47%), Positives = 312/469 (66%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAMQEGLSEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 PVAWHP ++VI +L+ D + +L + +L +RL+T +EL L+P+P+K +HLNKCP Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPLLELSAEKLQERLYTKREELGDLLPIPVKLIHLNKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P E+ E GID ++CL NL LLRQ +R++ +++ + S DVD+QL Sbjct: 306 ILAPAKTLTAENAEIIGIDRQKCLNNLALLRQHPEIREKLIGLFSIEREFQKSDDVDTQL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+ DR MD I T L+ L++ F D+R+ L FRYRAR++ TL E+E++ W Sbjct: 366 YEGFFSPADRAAMDIIRETDAHNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +H ++ + +IEEY L++L E++ DE K L+ ++Y Y++ + Sbjct: 426 EQHCRE-VFEGQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS 473 >gi|197335521|ref|YP_002156294.1| exodeoxyribonuclease I [Vibrio fischeri MJ11] gi|197317011|gb|ACH66458.1| exodeoxyribonuclease I [Vibrio fischeri MJ11] Length = 474 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 222/469 (47%), Positives = 301/469 (64%), Gaps = 3/469 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA ITG Sbjct: 7 PSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WSW Sbjct: 67 ITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWDLLDVMRA+YA P+GI WP ++G SFKL++L++ANGIEH NAHDA ADV Sbjct: 127 QNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADVI 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ L ++E +PK+F YL RNK + LIDI MTPL+HVSGMFG R N + I P Sbjct: 187 ATIELAKKVKEAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIVP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VAWHP ++VI +L+ D VF L+ +L +R++T +L +PVP+K VHLNKCP Sbjct: 247 VAWHPTNNNAVITIDLALDPSVFLKLNVEELHQRMYTKRSDLGPDELPVPVKLVHLNKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 +L P E+ +D + CL NL ++R+ +R + +Y+ +P S +VD+ L Sbjct: 307 VLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTLL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ +D I ++ PEQL +D R+ L FRYRARNFPHTL+E E+ W Sbjct: 367 YDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H + ++ + +Y+ ++L E +G++ K ++ A+Y Y+Q +I Sbjct: 427 HAHLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLIS 474 >gi|260778470|ref|ZP_05887362.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450] gi|260604634|gb|EEX30929.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450] Length = 474 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 232/470 (49%), Positives = 309/470 (65%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF +IH+ S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAASKGLPEPEFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+GI WP ++G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGINWPENEEGFISFKLEHLSVANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ + Sbjct: 186 IATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWVV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVAWHP +++VI +L+ D + DLD QL +RL+T H EL +PVPIK VHLNKC Sbjct: 246 PVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ GID ++CL+NL LRQ +R++ ++Y+ + S DVD+ Sbjct: 306 PILAPAKTLTAENAANIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTM 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ +Q MD I T P+ LS L++ FSD R+ L FRYRAR+FP TL E E+Q Sbjct: 366 LYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDDRIAPLLFRYRARHFPWTLDESEQQK 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H ++ SRIE+Y L++L E++ DE K ++ ++Y+Y+Q ++ Sbjct: 426 WAAHSREYF-ESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS 474 >gi|333002524|gb|EGK22085.1| exodeoxyribonuclease I [Shigella flexneri VA-6] Length = 474 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 238/468 (50%), Positives = 324/468 (69%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 EHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 427 QEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474 >gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891] gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891] Length = 474 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 229/467 (49%), Positives = 304/467 (65%), Gaps = 3/467 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPHPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF +IH+ + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQTAETQGLSEPEFIAKIHEQLATPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA YA P+GI+WP D+G SFKL+ L+ NGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGIEWPVNDEGFISFKLEHLSKENGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ + Sbjct: 186 IATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWVV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVAWHP +++VI +L+ D + DLD QL +RL+T H EL +PVP+K +HLNKC Sbjct: 246 PVAWHPTNQNAVICVDLAKDPQALLDLDVEQLNERLYTKHSELGPDELPVPVKLIHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ E+ GID ++CL NL LLRQ +R++ +Y+ + S DVD+ Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLNNLALLRQHPEVREKLIGLYSAEREYEKSSDVDTM 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ MD I T P L+ L++ F+D+R+ L FRYRARNFP TL E E+Q Sbjct: 366 LYDGFFSPADKTAMDIIRETDPNNLTALDITFNDQRIDPLLFRYRARNFPWTLDESEQQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 W H + SRIE+Y L++L E++ D+ K ++ ++Y+Y+Q Sbjct: 426 WANHCRDYF-ESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQK 471 >gi|254449147|ref|ZP_05062598.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015] gi|198261261|gb|EDY85555.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015] Length = 474 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 203/474 (42%), Positives = 297/474 (62%), Gaps = 6/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ F YD ETFG D R AQFAG R D I V +C+P+ D+LPDPEA I Sbjct: 1 MSQTFYWYDLETFGTDPKTTRIAQFAGQRTDADLNPIGDPLVIYCQPSPDFLPDPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A R+G+ E+EF +RIH+ FS PNTC++GYN++RFDD + R FYRNF D Y Sbjct: 61 TGITPQVAAREGLPESEFIQRIHREFSQPNTCVLGYNSLRFDDEFMRYGFYRNFIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NG SRWDL+DV+R A P+GI+WP +DG S KL+DL ANG+ H AHDA +D Sbjct: 121 EWQNGCSRWDLIDVVRLTRALRPEGIEWPFHEDGTPSNKLEDLTQANGLVHSKAHDAYSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 + AT+A+ I+EK+PKL+++ R+K +L + + P+VH+SGM+G R++TA++ Sbjct: 181 IEATIAVAKRIKEKQPKLWQFCLHNRDKRKLAGQLKVAAKEPVVHISGMYGNERASTAIV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 PVA HP K+ +I +L+ D LDS +A+R+FT ++L +P+K VHLNKC Sbjct: 241 VPVARHPSNKNGIIVYDLAHDPAELIALDSAAIAERVFTRREDLGDKERLPLKTVHLNKC 300 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P++ P+ +E +R GID + + + L+ +L R +A + + D D L Sbjct: 301 PVIAPLSTLSEEAAQRLGIDIEEQVARIETLKPIDDLEQRVQAAFGQQQFDPITDPDQSL 360 Query: 361 YDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y G F D D+ +M +I +PEQLS L+LPF D+RLPEL FR+RARN+P +L E+Q Sbjct: 361 YGGGFIGDSDKALMRQIHSASPEQLSNLDLPFQDKRLPELLFRFRARNYPMSLDSDEQQR 420 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W E ++ + +++++NKL +L+ EY+ D+ K ++ L +Y++ + Sbjct: 421 WAELCREHIHDGKSGYLNLDQFQNKLMALAQEYEHDDSKLHVLKQLADYVEHIA 474 >gi|24113393|ref|NP_707903.1| exonuclease I [Shigella flexneri 2a str. 301] gi|30063460|ref|NP_837631.1| exonuclease I [Shigella flexneri 2a str. 2457T] gi|24052413|gb|AAN43610.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase [Shigella flexneri 2a str. 301] gi|30041713|gb|AAP17440.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase [Shigella flexneri 2a str. 2457T] gi|281601461|gb|ADA74445.1| deoxyribophosphodiesterase [Shigella flexneri 2002017] gi|313649951|gb|EFS14371.1| exodeoxyribonuclease I [Shigella flexneri 2a str. 2457T] gi|332756645|gb|EGJ86994.1| exodeoxyribonuclease I [Shigella flexneri K-671] gi|332756922|gb|EGJ87267.1| exodeoxyribonuclease I [Shigella flexneri 2747-71] gi|332766358|gb|EGJ96567.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase [Shigella flexneri 2930-71] gi|333002384|gb|EGK21946.1| exodeoxyribonuclease I [Shigella flexneri K-218] gi|333017067|gb|EGK36388.1| exodeoxyribonuclease I [Shigella flexneri K-304] Length = 474 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 239/468 (51%), Positives = 325/468 (69%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474 >gi|145299357|ref|YP_001142198.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida A449] gi|142852129|gb|ABO90450.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida A449] Length = 475 Score = 398 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 213/466 (45%), Positives = 308/466 (66%), Gaps = 2/466 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F +DYETFG A DRP+QFAG+R D + I V +CKP DYLPDPEA ITG Sbjct: 11 PTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITG 70 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD +R YRNFYD Y ++W Sbjct: 71 ITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAW 130 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD+LD++RA YA P+GI+W ++G SF+L+ L +ANG+ H NAHDA +DV Sbjct: 131 QNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFRLEKLTVANGVSHANAHDALSDVL 190 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + L+++ +PKLFEYL+ RNKN+++ LID+ M PLVHVSGMF + + I+P Sbjct: 191 ATIEMAKLVKKAQPKLFEYLFTLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCVSWISP 250 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP +++VI +L+ D +L S ++ +RL+T DEL L +P+K VH+NKC + Sbjct: 251 LAWHPTNQNAVIMVDLTRDPTPLIELSSEEIRERLYTRKDELGDLAAIPVKLVHINKCRV 310 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361 L P E + ID ++C ++L LLR +R++ ++N+ + S+ D D+QLY Sbjct: 311 LAPAATLTPERADELTIDREQCRKSLNLLRAHPEVREKLVEVFNQEFEGSNDPDPDTQLY 370 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W Sbjct: 371 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDARLPEMLFRYRARNWPHTLSEAEQKRWR 430 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 H R+ +Y +L++L+ + +G+E ++ +LY YL+ + Sbjct: 431 LHCSDYF-SRRLPDYAPRLEALAEQNQGNERNFAILKSLYRYLEDL 475 >gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1] gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1] Length = 473 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 224/470 (47%), Positives = 301/470 (64%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET+G A DR QFAGVR D + I V +C+P DYLP PEA IT Sbjct: 5 QPTYFFFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALIT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 65 GITPQLCQEKGLSEPEFIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 125 WQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHENAHDAMADV 184 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y Y R K +L +L+DI NMTPL+HVSGM G T+ + Sbjct: 185 IATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYTSWVV 244 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ D + DLD L +RL+T HDEL PVP+K +HLNKC Sbjct: 245 PIAWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIHLNKC 304 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ E GID ++CL+NL L++Q +R++ +Y+ + + DVD+Q Sbjct: 305 PILAPAKTLTAENAESIGIDREQCLKNLALIKQHPEIREKLIGLYSIEREFENDGDVDTQ 364 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ D+ MD I T P LS L++ FSD R+ L FRYRARNFP +L E E+ Sbjct: 365 LYSGFFSPADKSAMDIIRETDPNNLSALDISFSDPRIEPLLFRYRARNFPWSLDETEQAR 424 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H ++ SRIE Y +++L E++ DE K ++ ++Y Y++ ++ Sbjct: 425 WANHCRE-FFESRIESYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS 473 >gi|312884477|ref|ZP_07744181.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122] gi|309367789|gb|EFP95337.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122] Length = 474 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 229/470 (48%), Positives = 302/470 (64%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP QFAGVR DR + I V +C+P +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGTNPATDRPCQFAGVRTDRDFNIIGEPVVLYCQPPNDYLPSPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA +G++E EF +IH+ + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKAQAEGLIEPEFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+GI WP D+G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGINWPQNDEGFPSFKLEHLSVANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + I +PKLF+Y D R+K +L LIDI NMTPL+HVSGM G T+ I Sbjct: 186 IATIEMAKKISVAQPKLFQYFLDMRHKRKLNDLIDIVNMTPLMHVSGMLGKECQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300 PVAWHP +++VI +L+ D DL++ QL +RL+T EL PIK VHLNK Sbjct: 246 PVAWHPTNQNAVICIDLARDPSAIFDLNAQQLHERLYTKRSELNDKEVSAPIKLVHLNKS 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E +R GID + CLENL +LR +R++ +Y+ + S DVD+ Sbjct: 306 PILAPAKTLTAEDAQRIGIDREACLENLAMLRNHPEIREKLIGVYSIEREFKKSSDVDAM 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF D+ M I T PE LSTL++ F D R+ +L FRYRARNFP TLSE E+Q Sbjct: 366 LYDGFFNPADKTAMKIIRETDPECLSTLDISFDDERISKLLFRYRARNFPWTLSEPEQQK 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H ++ RIE+Y L++L E++ + ++ ++Y++++ ++ Sbjct: 426 WANHCREYF-EQRIEDYMLNLENLVHEHEQCPKQMAILKSIYQHVETLVS 474 >gi|161502767|ref|YP_001569879.1| exonuclease I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864114|gb|ABX20737.1| hypothetical protein SARI_00818 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 476 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 242/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + + +VF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIVGEPDVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEACEKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWD+LDVMRA YA P+GI WP DDG SF+L+ L AN IEH NAHDA ADV Sbjct: 129 WQHENSRWDILDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANDIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVH+SGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L RL+T+ +L VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRDRLYTAKADLGNNAAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + SS +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFSSPDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDSDRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 L HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 429 LAHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476 >gi|209695175|ref|YP_002263104.1| exonuclease I [Aliivibrio salmonicida LFI1238] gi|208009127|emb|CAQ79365.1| exodeoxyribonuclease I [Aliivibrio salmonicida LFI1238] Length = 474 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 225/469 (47%), Positives = 301/469 (64%), Gaps = 3/469 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA ITG Sbjct: 7 PSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPEACLITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WSW Sbjct: 67 ITPQMAVSKGLSEPEFIAQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWDLLDVMRA+YA P+GI+WP ++G SF+L+ L+ ANGIEH NAHDA ADV Sbjct: 127 QNGNSRWDLLDVMRAVYALRPEGIEWPKDEEGKPSFRLEKLSQANGIEHENAHDAMADVI 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ L ++++ +PK+F YL R+K + LIDI MTPL+HVSGMFG R N + I P Sbjct: 187 ATIELAKVVKKAQPKMFNYLLSMRHKKKAATLIDIIEMTPLMHVSGMFGVDRGNISWIVP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VAWHP ++VI +L+ D VF +LD+ QL +R++T EL +PVP+K VHLNKCP Sbjct: 247 VAWHPTNNNAVITIDLALDPAVFLELDAEQLHQRMYTKRSELGPDELPVPVKLVHLNKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360 IL P E+ +D + CL NL ++R+ +R + +YN S +VD+ L Sbjct: 307 ILAPAKTLTAENAIALNVDREACLRNLKVIRENPEIRQKLIDLYNIEPGYEKSSNVDTLL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ +D I ++ PEQL SD R+ L FRYRARNFPHTL+E E+ W Sbjct: 367 YDGFFSHADKTAIDMIRQSTPEQLIDFEPNVSDPRIKPLLFRYRARNFPHTLNESEQLRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 H + + + +Y+ + +SL E +G+E K ++ A+Y Y+Q ++ Sbjct: 427 QAHLQDYF-ETHMSDYETRFESLYLESEGNEKKTAILRAVYNYVQQLVS 474 >gi|119775108|ref|YP_927848.1| exonuclease I [Shewanella amazonensis SB2B] gi|119767608|gb|ABM00179.1| Exodeoxyribonuclease I subunit C [Shewanella amazonensis SB2B] Length = 470 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 220/468 (47%), Positives = 287/468 (61%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG A DRPAQFAGVR D I+ F+C+ + DYLP PEA+ IT Sbjct: 6 QPTIFWHDYETFGASPAKDRPAQFAGVRTDLDLNIIDEPVTFYCRLSPDYLPAPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A R G+ E EF RI FS PNTC+ GYN++RFDD SR FYRNF D Y Sbjct: 66 GITPQLANRQGLPETEFMGRIQAIFSRPNTCVAGYNSLRFDDEVSRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWD++D++RA YA P+GI WP ++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQQGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTAANGLGHDKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+AL LI+EK+PKLF+Y + R K + + ID+ M PLVH+S A++ LIA Sbjct: 186 YATIALARLIKEKQPKLFDYYFRLRRKQAVAEQIDVLAMQPLVHISSKIPATQGCATLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA H R K++VI NL+ D++ DLD L RL+T ++L +PVP+K++HLNKC Sbjct: 246 PVAHHMRNKNAVICVNLAMDIQPLIDLDVDALRTRLYTKREDLANDELPVPVKQIHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + + ER GID E LL+Q +R++ A++ + S D D L Sbjct: 306 PFVANAKTLDDANAERLGIDKAFAREQYRLLKQHPEIREKLTALFEEEPQGMSNDPDYSL 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ DR MD I T+PE L+ L L F D RLPE+ FRYRARN+P TLS E Sbjct: 366 YSGGFFSPADRAKMDIIRNTSPEHLAALELQFDDTRLPEMLFRYRARNYPLTLSYDESLR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L +Y +L++L E DE K+ L+ AL +YLQ + Sbjct: 426 WREFCQARLND---PDYVIRLENLLEETTKDEKKQKLLGALCQYLQSL 470 >gi|284007268|emb|CBA72582.1| exodeoxyribonuclease I [Arsenophonus nasoniae] Length = 474 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 241/469 (51%), Positives = 327/469 (69%), Gaps = 1/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG+ ALDRPAQFAG+R D + IE ++F+C PADDYLP P+AV IT Sbjct: 6 KSSFLFHDYETFGQHPALDRPAQFAGIRTDSNFNIIEDPQIFYCAPADDYLPQPQAVMIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A+ G+ EAEF++RIH FS+ N+CI+GYNNIRFDD +R+IFYRNFYD Y +S Sbjct: 66 GITPQYAIAHGINEAEFAKRIHGIFSIANSCILGYNNIRFDDEVTRHIFYRNFYDPYAYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA PDGI WPS D+G SFKL+ L + NGIEH NAHDA ADV Sbjct: 126 WQQGNSRWDLLDVLRACYALRPDGINWPSNDEGLPSFKLEHLTVVNGIEHANAHDATADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + LI++ +PK+F+Y + RNKN++++LIDI MTPLVHVSGMFGA R+NT+LIA Sbjct: 186 LATIEMAKLIKQAQPKMFDYFFRLRNKNEVKQLIDIIAMTPLVHVSGMFGAIRANTSLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP ++++I C+L+ D+ LDS L +RL+T DEL G + +PIK +H+NKCP Sbjct: 246 PLAWHPENRNAIIACDLAADISPLLTLDSDTLRQRLYTPKDELAGELAIPIKLIHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQL 360 IL P + + +R +D C NL +LRQ + +RD+ ++ ++ DVD+ L Sbjct: 306 ILAPANTLRTADAQRIALDLDVCQNNLAILRQHSEVRDKVIRLFTEAQPFPAATDVDAML 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y GFF D DR M I +T P+ L L+L F D R+ +LFFRYRARN+P TL+E+E+ W Sbjct: 366 YSGFFGDNDRSTMAIIRQTLPQNLPALDLKFDDPRMRQLFFRYRARNYPATLTEQEQLAW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 L HR+ LT +I +Y ++ L E++ ++ K + AL +Y + Sbjct: 426 LHHRRDRLTCEKISQYLQTIEQLFAEHQENKEKCQQLKALVDYANQIAS 474 >gi|288942185|ref|YP_003444425.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180] gi|288897557|gb|ADC63393.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180] Length = 477 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 199/476 (41%), Positives = 289/476 (60%), Gaps = 10/476 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M++ F +DYET+G D DRP QFAGVR D ++ V FC+P+DD LP P+A + Sbjct: 1 MSDTFYWHDYETWGADPRRDRPCQFAGVRTDADLNEVGDPLVLFCRPSDDLLPHPDACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+TPQ+ R+GVVEAEF+R IH S P TC +GYN++RFDD +R++FYRNF+D Y Sbjct: 61 TGLTPQRVAREGVVEAEFARAIHAELSRPGTCGVGYNSLRFDDEVTRHLFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W +GNSRWDL+DV+R +A P+GI+WP D+G TSF+L+ L +ANGI+H AHDA AD Sbjct: 121 EWRSGNSRWDLIDVLRLAHALRPEGIEWPLNDEGTTSFRLEQLTVANGIDHGQAHDALAD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL +R+ +P+LF Y R+K ++R L+D PL+HVS F A+ A I Sbjct: 181 VRATIALARRLRDIQPRLFSYALTLRDKRRVRALLD--ERRPLLHVSARFPAALGCIAPI 238 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 PVA HP + VI +L D +L ++ +RLFT ++L G+ VP+K VH+N Sbjct: 239 CPVAAHPTNSNGVICFDLRADPSQLLELSVEEIRRRLFTPSEDLPAGVERVPLKTVHVNH 298 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P+L P+ E ERW ID R + + + + + ++ D + Sbjct: 299 VPMLAPLATLTPERAERWSIDPARVVRHAQWIAASSIAIESRVRAVHERPLPVETDPELM 358 Query: 360 LYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LY G F +D DR+ D+++R+ P +L+T FSD RL L FRYRARN+P TL+ +E++ Sbjct: 359 LYSGGFLSDADRRACDQVVRSNPAELATAPPRFSDPRLGTLLFRYRARNWPETLTPEERE 418 Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 DW +R LT IE Y+ +L L+G + D + +++AL ++ + V+ Sbjct: 419 DWDAYRFMRLTDPDGGASLQIEGYEARLAELAGVHDDDPARLAILDALGDWAEQVL 474 >gi|333003504|gb|EGK23045.1| exodeoxyribonuclease I [Shigella flexneri K-272] gi|333017330|gb|EGK36648.1| exodeoxyribonuclease I [Shigella flexneri K-227] Length = 474 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 239/468 (51%), Positives = 325/468 (69%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPRAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474 >gi|110805983|ref|YP_689503.1| exonuclease I [Shigella flexneri 5 str. 8401] gi|110615531|gb|ABF04198.1| Exodeoxyribonuclease I [Shigella flexneri 5 str. 8401] Length = 474 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 237/468 (50%), Positives = 324/468 (69%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +A Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LD L + L+T+ +L VP+K VH++KCP Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRELLYTAKADLGDNAAVPVKLVHIDKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QL Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++ Sbjct: 427 LEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474 >gi|300723649|ref|YP_003712954.1| exonuclease I [Xenorhabdus nematophila ATCC 19061] gi|297630171|emb|CBJ90808.1| exonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase [Xenorhabdus nematophila ATCC 19061] Length = 476 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 248/469 (52%), Positives = 320/469 (68%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLPDPEAV IT Sbjct: 7 QQSFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+AL GV E EF+R+IH+ S PNTCI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQQALTKGVNEVEFARQIHEVLSKPNTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA P+GI WP DDG SFKL+ L ANGIEH +AHDA +DV Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGIEHTHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P+LF+Y + RNK ++ IDI M PLVHVSGMFGA RSN +LIA Sbjct: 187 YATIAMAKLVKKAQPRLFDYFFQLRNKQKIINQIDIPQMKPLVHVSGMFGALRSNISLIA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GD+ + + +L KRL+T DEL+ PVPIK VH+NKC Sbjct: 247 PLAWHPTNRNAVIMCDLAGDISPLLEPNVDELRKRLYTRRDELQPNQSPVPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PI+ P + + E ER +D +C NL +LR +R+R ++ + S +VD++ Sbjct: 307 PIIAPENTLRPEDAERVELDRNQCEYNLAILRNHPQIRERVVELFSSPEEFPESDNVDAK 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF D D+ M+ I +TAP+ L L+L F D R+ L FRYRARN+P TL E+Q Sbjct: 367 LYSGFFGDADKTAMEIIRKTAPQNLPALDLTFQDERIKALLFRYRARNYPATLDYDEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL HR+ +LT+ I +Y +++L EY+ DE K + L EY + Sbjct: 427 WLRHRQDILTQESISQYLATIEALFVEYQSDEEKCRQLKTLVEYAVQLA 475 >gi|119476956|ref|ZP_01617237.1| Exonuclease I [marine gamma proteobacterium HTCC2143] gi|119449763|gb|EAW31000.1| Exonuclease I [marine gamma proteobacterium HTCC2143] Length = 478 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 199/477 (41%), Positives = 287/477 (60%), Gaps = 9/477 (1%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT+ F +DYETFG D A DRP+QFAGVR D + I V FCKPA D LP PEA Sbjct: 1 MTDFSFYWHDYETFGADPARDRPSQFAGVRTDSDFNIIGEPLVIFCKPAADILPQPEACL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ITGITPQ+AL GV EAEF R+IH FS P TC +GYN++RFDD SR YRNFYD Y Sbjct: 61 ITGITPQQALEQGVCEAEFIRQIHAEFSQPGTCAVGYNSVRFDDEVSRYTLYRNFYDPYA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W NGNSRWD++D++R A P+GI WP+ D+G SFKL+ L ANGI H +AHDA + Sbjct: 121 REWQNGNSRWDIIDMVRVCCALRPEGINWPTHDNGMPSFKLEQLTAANGISHESAHDALS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV+AT+A+ LI++K+PKLF+YL R+K+++ ++++ P++H S M+ A R T L Sbjct: 181 DVHATIAMAKLIKQKQPKLFDYLLKLRSKHEVSAMLNVAEKLPVLHTSAMYPAHRFCTTL 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298 I PVA HP K+ VI +LS D L++ Q+ +RL+T EL +G +P+K +H+N Sbjct: 241 IMPVAVHPTNKNGVICYDLSVDPAPLLSLNAGQITERLYTPASELPEGAARIPLKTIHIN 300 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 +CP+++ + ER +D + ++ L + L ++ ++ + D D Sbjct: 301 RCPVVVTSKLMDEAVAERIQLDLPKARKHYQALVKTQGLAEKLSEVFAERSFPERTDPDV 360 Query: 359 QLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 LY GFF+ D+ +M ++ ++P++L + F D RL ++ FRYRARNFP +LS +E Sbjct: 361 MLYSGGFFSQNDKAVMAQVRCSSPDELREHSFVFEDARLDDMLFRYRARNFPESLSAEEL 420 Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 Q W E R LT +EE+ Q+L + + ++ L +Y ++ Sbjct: 421 QQWHEFRYYRLTDPEADVSISMEEFLETTQALLNDEACSDRDRAILEELQDYSDSLL 477 >gi|260772965|ref|ZP_05881881.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14] gi|260612104|gb|EEX37307.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14] Length = 480 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 224/470 (47%), Positives = 305/470 (64%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F DYET+G A DRP+QFAGVR D + I V +C+ DYLP PEA IT Sbjct: 12 QQTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALIT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA+ +G+ E EF RIH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 72 GITPQKAMAEGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDVMRA +A P+GI+WP +G TSFKL+ L+ ANGIEH NAHDA ADV Sbjct: 132 WQQGNSRWDLLDVMRACHALRPEGIEWPENQEGFTSFKLEHLSKANGIEHSNAHDAMADV 191 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L I+ +PKLF+Y R+K +L L+DI NMTPL+HVSGM G RS T+ + Sbjct: 192 IATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRERSYTSWVV 251 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ + +L S QL +RL+T HD+L +G +P P+K +HLNKC Sbjct: 252 PIAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKC 311 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ GI+ ++CL +L+ +RQQ LR++ +++ + S+S DVDSQ Sbjct: 312 PILAPAKTLTAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQ 371 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ DR MD I APE L+ L++ FSD+R+ L FRYRAR++P TL+E E++ Sbjct: 372 LYDGFFSPSDRAAMDIIRSAAPESLADLDIQFSDQRIAPLLFRYRARHYPWTLNETEQRR 431 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H + + Y L++L +++ D K ++ A+Y Y++ + Sbjct: 432 WASHCQDYFATQ-LPSYMLNLENLVEQHQHDAKKIAILKAVYHYVEALAS 480 >gi|89330232|emb|CAJ84173.1| exodeoxyribonuclease I [Escherichia coli K-12] Length = 467 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 243/467 (52%), Positives = 324/467 (69%), Gaps = 7/467 (1%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 >gi|307546461|ref|YP_003898940.1| exonuclease I [Halomonas elongata DSM 2581] gi|307218485|emb|CBV43755.1| exonuclease I [Halomonas elongata DSM 2581] Length = 506 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 200/485 (41%), Positives = 283/485 (58%), Gaps = 18/485 (3%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +DYETFG D DRP+QFA +R D + +I FCKPADDYLP P+A ITGI Sbjct: 20 TFLWHDYETFGADPRRDRPSQFAAIRTDADFNEIGEPIELFCKPADDYLPHPQACLITGI 79 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+A R G+ EAEF+ R+ S P TC +GYNN+RFDD R++FYRN D Y W Sbjct: 80 TPQQAKRRGLPEAEFAGRVQAAMSEPGTCALGYNNLRFDDEVGRHLFYRNLIDPYAREWQ 139 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDL+DV+RA +A PDGI WP+RDDG SFKL+DL ANGIEH AHDA ADV A Sbjct: 140 NGNSRWDLIDVVRAFHALRPDGITWPTRDDGTPSFKLEDLTAANGIEHAGAHDALADVRA 199 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ L L+R LF+YL R K + + ID+ + P++H+S + ASR +AL+ P+ Sbjct: 200 TIELARLLRRSNANLFDYLLGMRGKRAVGRAIDVASRKPVLHISRRYPASRGCSALVMPL 259 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A HP + VI +L+ D LD+ Q+ R+F S+D+L +G +P+K +H+NKCP+ Sbjct: 260 AEHPTNPNGVIVYDLAVDPEPLLSLDAQQIRDRVFVSNDDLAEGESRIPLKVIHINKCPV 319 Query: 303 LMPIDYCKK----------EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS 352 +MP + K E ER G+D C + L ++ R ++ P S Sbjct: 320 IMPANALKDASGPHRGEYGEIVERLGVDVASCRRHWKALAASPDVSARVAEVFAGPPPES 379 Query: 353 SQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411 D D LY GFF+ DRQ M R+ + P L F D RL E+ FRYRAR++P T Sbjct: 380 PHDPDLMLYSGGFFSPSDRQQMQRVRDSDPWDLVGARFAFQDPRLEEMLFRYRARSYPDT 439 Query: 412 LSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 L+ +E+ W R + + + E+ +++ L+ D ++ ++ L +++ Sbjct: 440 LTGEEQARWEAFRWERMNDPAVAGFTLTEFAREIERLNQVSLADRERQ-ILEELVMHVEA 498 Query: 467 VIPKE 471 ++P + Sbjct: 499 IMPAQ 503 >gi|315180353|gb|ADT87267.1| exonuclease I [Vibrio furnissii NCTC 11218] Length = 473 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 224/470 (47%), Positives = 305/470 (64%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET+G A DRP+QFAGVR D ++ I V +C+ DYLP PEA IT Sbjct: 5 QPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPTPEAALIT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI PQKA+ G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 65 GIIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWS 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G+ WP D+G TSFKL+ L+ ANGIEH NAHDA ADV Sbjct: 125 WQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADV 184 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLFEY + R+K +L +LIDI NMTPL+HVSGM G T+ I Sbjct: 185 IATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 244 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ D + DLD L RL+T HD+L +PVP+K VHLNKC Sbjct: 245 PIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKC 304 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ GID + CL NL +RQ ++R++ A+++ + +S DVD+Q Sbjct: 305 PILAPAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQ 364 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ M+ I T PE L L++ FSD+R+ L FRYRARNFP TL ++E++ Sbjct: 365 LYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIEPLLFRYRARNFPWTLDDEEQRR 424 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H + + + +Y L++L E++ DE K ++ ++Y+Y++ + Sbjct: 425 WANHCRDY-YETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS 473 >gi|330446032|ref|ZP_08309684.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490223|dbj|GAA04181.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 473 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 227/467 (48%), Positives = 307/467 (65%), Gaps = 3/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGI Sbjct: 8 TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+A+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W Sbjct: 68 TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD+MR YA PDG+ WP D+ SFKL+ L++ANGIEH NAHDA ADVYA Sbjct: 128 NGNSRWDLLDIMRTCYALRPDGLNWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ L +++ +PKLF+YL+D R+K +L+ L+DI N+TPLVH+SGMFG NT+ I P+ Sbjct: 188 TIELAKIVKTNQPKLFDYLFDLRHKRKLQDLVDIVNLTPLVHISGMFGTDCGNTSWIVPL 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP K++VI NL+ D +LD+ QL +RL+T +L +PVPIKEVHLNKCP+ Sbjct: 248 AWHPDNKNAVITVNLALDPTPLIELDADQLRERLYTKRIDLAPDELPVPIKEVHLNKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361 L P K E R GID ++CL++L L++Q +R++ +++ K ++ +VD+ LY Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKHLALIKQHPEIREKVLEMFSVKREYDANDNVDAMLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF+ DR MD I T +QL +L + D+R+ L FRYRARNFP TLS +E+ W Sbjct: 368 DGFFSTADRSTMDIIRETPADQLGSLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 H + + + +Y ++++ EY+ DE K ++ +LY+Y+ ++ Sbjct: 428 HHCQD-FFEANMPKYMENFEAVAYEYESDENKMKILKSLYDYVSKLV 473 >gi|260768651|ref|ZP_05877585.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972] gi|260616681|gb|EEX41866.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972] Length = 473 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 224/470 (47%), Positives = 305/470 (64%), Gaps = 3/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET+G A DRP+QFAGVR D ++ I V +C+ DYLP PEA IT Sbjct: 5 QPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALIT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI PQKA+ G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 65 GIIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWS 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA +A P+G+ WP D+G TSFKL+ L+ ANGIEH NAHDA ADV Sbjct: 125 WQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADV 184 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLFEY + R+K +L +LIDI NMTPL+HVSGM G T+ I Sbjct: 185 IATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 244 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ D + DLD L RL+T HD+L +PVP+K VHLNKC Sbjct: 245 PIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKC 304 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 PIL P E+ GID + CL NL +RQ ++R++ A+++ + +S DVD+Q Sbjct: 305 PILAPAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQ 364 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ M+ I T PE L L++ FSD+R+ L FRYRARNFP TL ++E++ Sbjct: 365 LYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIDPLLFRYRARNFPWTLDDEEQRR 424 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W H + + + +Y L++L E++ DE K ++ ++Y+Y++ + Sbjct: 425 WANHCRDY-YETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS 473 >gi|157962308|ref|YP_001502342.1| exonuclease I [Shewanella pealeana ATCC 700345] gi|157847308|gb|ABV87807.1| Exodeoxyribonuclease I [Shewanella pealeana ATCC 700345] Length = 470 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 202/468 (43%), Positives = 285/468 (60%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG + A DRP+QFAGVR D I E F+CK A+DYLP PEA+ IT Sbjct: 6 QPTLFWHDYETFGANPAKDRPSQFAGVRTDMDLNIIGEPETFYCKLANDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ EAEF +I+ FS P TC++GYN++RFDD SR FYRNF D Y Sbjct: 66 GITPQLANLKGMPEAEFMDKINSLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H AHDA +DV Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + LI+ +PKLF+Y + R K Q+ KLID+ M PLVHVS A T +IA Sbjct: 186 YATIDMAKLIKSVQPKLFDYYFSLRLKQQVSKLIDVLEMKPLVHVSSKISALNGCTTIIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA+H K++VI NL+ D+ +L ++ +R++T +L +P+ +K++H+NK Sbjct: 246 PVAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQIHINKS 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + + E+ R D L+Q LR++ A+++ + + D D L Sbjct: 306 PFIAAANTLTDENAARLDFDKAFARAQYKKLKQHPELREKLVAVFDVEHEGKTVDPDQAL 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ ++ I T P L+ L L F D+RL E+ FRYRARN+P TL + E+ Sbjct: 366 YSGGFFSSADKAKIEIIRHTQPRNLAALELDFDDQRLSEMLFRYRARNYPETLDDSEQYR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L +Y +L++L E + DE K+ L+ AL YL+ + Sbjct: 426 WREFCQTRLND---PDYIIRLENLLEETEQDESKQKLLQALCHYLRNL 470 >gi|253989171|ref|YP_003040527.1| exonuclease I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780621|emb|CAQ83783.1| exodeoxyribonuclease i (exonuclease i) (dn deoxyribophosphodiesterase) [Photorhabdus asymbiotica] Length = 476 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 246/469 (52%), Positives = 325/469 (69%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGKHPALDRPAQFAGVRTDMDFNIIEDPLVIYCSPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL G+ EAEF+R+IH FSVPN CI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQVALEKGINEAEFARKIHNVFSVPNCCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA P+GI WP DDG SFKL+ L ANG+EH +AHDA +DV Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHSHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L+++ +P++F+Y + RNK ++ LIDI M PLVHVSGMFGA+RSNT+L+A Sbjct: 187 YATIAMAKLLKKAQPRMFDYFFQLRNKQKISNLIDIPQMKPLVHVSGMFGAARSNTSLVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GD+ +LD+ L +RL+T HDE L P P+K VH+NKC Sbjct: 247 PLAWHPINRNAVIMCDLAGDISPLLELDADALRERLYTRHDELLPDQPPAPVKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 PI+ P + + E ER G+D C +NL +LR +R++ ++ + S +VD++ Sbjct: 307 PIIAPDNTLRAEDAERLGLDRDHCEKNLAILRNNPQIREKVVELFAQAEPFPESDNVDAK 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+D D+ M+ I T P+ L L+L F D R+ L FRYRARN+P TL+ E+Q Sbjct: 367 LYDGFFSDADKTAMNIIRETLPQNLPALDLTFQDPRIKTLLFRYRARNYPSTLTYDEQQR 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL HR+ +LT+ ++ EY ++ L E++ +E K + L EY + Sbjct: 427 WLRHRQDVLTQDKLSEYIFIIEQLFIEHQSNEEKCRQLKTLMEYAVKLA 475 >gi|83647678|ref|YP_436113.1| exonuclease I [Hahella chejuensis KCTC 2396] gi|83635721|gb|ABC31688.1| Exonuclease I [Hahella chejuensis KCTC 2396] Length = 483 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 211/480 (43%), Positives = 288/480 (60%), Gaps = 11/480 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F YD+ET+G D DRP+QFAGVR D IE V +C PA+D LP PEA I Sbjct: 1 MADTFYWYDFETWGADPRRDRPSQFAGVRTDLDLNPIEKPLVMYCMPAEDVLPQPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQKAL +GV EAEF R IH+ FS P TC++GYN+IRFDD +RN YRNFYD Y Sbjct: 61 TGITPQKALSEGVSEAEFIRLIHEQFSRPGTCVVGYNSIRFDDEVTRNTLYRNFYDPYSR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++R YA PDGI WP +G SF+L++L ANG+ H AHDA +D Sbjct: 121 EWRNGNSRWDVIDMVRLTYAMRPDGINWPMNAEGVPSFRLEELTKANGVTHEAAHDAMSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+A+ LI+ +PKL++Y+ +RNK L L+DI+ M PL HVS F A+ A++ Sbjct: 181 VYATIAVARLIKTAQPKLYDYVLGHRNKKVLEGLVDIERMKPLFHVSSKFPAALGCCAMV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 AP+A HP + VI +L D + L ++ +R+FTS+++L +G +P+K VHLNK Sbjct: 241 APIARHPTNPNGVIVYDLRADPSTWTHLPVEKIRERIFTSNEDLPEGAERIPLKVVHLNK 300 Query: 300 CPILMPIDYCKKEHFER---WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 CPIL+ K ER + +D + +L LRQ N++ R ++N+P S D Sbjct: 301 CPILVESKILKTMDPERLRGFQLDGDKLRSHLQALRQAENIQQRVAEVFNEPMDDSETDP 360 Query: 357 DSQLYDGFFADVDRQIMDRI-LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 D LY G F + + + +PE L L LPF D RL E+ FRYRARNFP TL+E+ Sbjct: 361 DLMLYSGGFFSNNDRELMTFIHEQSPEVLGELELPFEDPRLQEMLFRYRARNFPGTLNEE 420 Query: 416 EKQDWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E + W +R L + Y KL+ L+ + ++ L+ Y + +IP Sbjct: 421 EMEKWERYRYHRLAGESSGASISFQAYFKKLEQLAANPDITPFQLSILQDLHLYGESIIP 480 >gi|90415078|ref|ZP_01223036.1| putative exonuclease I [Photobacterium profundum 3TCK] gi|90323813|gb|EAS40426.1| putative exonuclease I [Photobacterium profundum 3TCK] Length = 474 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 227/467 (48%), Positives = 305/467 (65%), Gaps = 3/467 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T DYETFG A DR QFAGVR D + I V +CKP DYLP PEA IT Sbjct: 6 TPTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGEPLVIYCKPPVDYLPSPEACLIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G+ E EF +IH S PNTC+IGYNN+RFDD +R YRNFYD Y W Sbjct: 66 GITPQEAQEKGLSEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWG 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLD+MR YA P+G+ WP+ D+G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ L +++ +PKLF YL+D R+K +L++L+DI N+TPLVHVSGMFG NT+ I Sbjct: 186 YATIELAKILKTNQPKLFNYLFDLRHKRKLQELVDIVNLTPLVHVSGMFGVGCGNTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP K++VI NL+ D +LD+ Q+ +R++T ELK +P+P+K VHLNKC Sbjct: 246 PMAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359 P+L P K E R GID +CL+NL +L++ +R++ AI+ + + DVDS Sbjct: 306 PVLAPAKTLKAEDANRIGIDRAQCLKNLQILKEHPEIREKLVAIFAVQREYKENTDVDSM 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF++ DR +D I + PE L+ + L D+R+ L FRYRARNFP TL+ +E+Q Sbjct: 366 LYDGFFSNSDRSSIDIIRESTPEALAEIQLNVEDKRIKPLLFRYRARNFPLTLNYEEQQK 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 W H + + + Y ++++ E + +E K ++ ALY+Y+ Sbjct: 426 WKHHCQD-FFQDNLPAYMENFEAVATENQSNEHKMKILKALYDYINN 471 >gi|90578663|ref|ZP_01234473.1| putative exonuclease I [Vibrio angustum S14] gi|90439496|gb|EAS64677.1| putative exonuclease I [Vibrio angustum S14] Length = 473 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 230/467 (49%), Positives = 311/467 (66%), Gaps = 3/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGI Sbjct: 8 TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+A+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W Sbjct: 68 TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD+MR YA P+G+ WP D+ SFKL+ L++ANGIEH NAHDA ADVYA Sbjct: 128 NGNSRWDLLDIMRTCYALRPEGVNWPLDDEDRPSFKLEKLSIANGIEHANAHDAMADVYA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ L +I+ +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG NT+ I PV Sbjct: 188 TIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPV 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP K++VI NL+ D +LD+ QL +RL+T +L +PVP+KEVHLNKCP+ Sbjct: 248 AWHPDNKNAVITVNLALDPTPLIELDTDQLRERLYTKRVDLAPDELPVPVKEVHLNKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361 L P K E R GID ++CL+NL L++Q +R++ +++ K +++ +VD+ LY Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMFSVKREYAANDNVDAMLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF+ DR MD I TAP+QL++L + D+R+ L FRYRARNFP TLS +E+ W Sbjct: 368 DGFFSTADRSTMDIIRETAPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 H + + +Y ++++ E++ DE K ++ +LY+Y+ ++ Sbjct: 428 HHCQD-FFEMNMPKYMENFEAVAYEHESDENKMKVLQSLYDYVSKLV 473 >gi|327483926|gb|AEA78333.1| Exodeoxyribonuclease I [Vibrio cholerae LMA3894-4] Length = 474 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|89095382|ref|ZP_01168297.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92] gi|89080350|gb|EAR59607.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92] Length = 488 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 194/473 (41%), Positives = 288/473 (60%), Gaps = 7/473 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F +DYETFG D D P QFAG+R D IE + +CKP+DD LP PEA ITGI Sbjct: 7 TFYWHDYETFGADPKRDWPVQFAGIRTDEHLNVIEEPLMVYCKPSDDQLPYPEACLITGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQKA+ +G+ EA+F +IH+ + P TC +GYN+IRFDD +R YRNF+D Y W Sbjct: 67 TPQKAMDEGLCEADFFAKIHEQLARPGTCGVGYNSIRFDDEVTRYGLYRNFFDPYAREWQ 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NG SRWD++D++R P+GI WP +DG S +L+DL +ANGI+H +AHDA +DVYA Sbjct: 127 NGCSRWDIIDMLRLTRTLRPEGIVWPKYEDGTPSLRLEDLTVANGIDHGHAHDALSDVYA 186 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ + L+REK+PKLF Y+ + R+K ++ L+D Q+ P++H+S + NTA++AP+ Sbjct: 187 TIEMAKLVREKQPKLFNYVLNNRSKQSIQSLLDTQSFKPVLHISSRYAIEYGNTAVVAPI 246 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCPI 302 A HP K+ VI +L + L + +L + L+T EL P +K+VH+NKCPI Sbjct: 247 ATHPVNKNGVIVWDLRFNPEPLMQLSAEELRQLLYTPRAELDDSDPRIALKQVHINKCPI 306 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P E R I+ +C +L +LR T R++ IY++ + D D LY Sbjct: 307 IAPAGMISSEEAARLQINGDQCRAHLQMLRSYTGFREKLADIYSESPFDTDSDPDQMLYS 366 Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF DRQ+MD++ + P+QL+ L+LPF D RL E+ RY+ARN PH L+ +++ W Sbjct: 367 GGFFTPSDRQLMDQVRESGPDQLAELDLPFQDPRLEEMLLRYKARNCPHVLNHEDQMQWE 426 Query: 422 EHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +R++ L + +E++ +L L E + DE ++ ++ L Y + + P Sbjct: 427 TYRQRKLLKGEGGHLTMEKFYQRLNELYAEAETDEKRKHILEELAVYAEAIYP 479 >gi|229515610|ref|ZP_04405069.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21] gi|229347379|gb|EEO12339.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21] Length = 478 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 310 PILAPAKTLTSENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477 >gi|153826959|ref|ZP_01979626.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2] gi|149739207|gb|EDM53479.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2] Length = 474 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|153829736|ref|ZP_01982403.1| exodeoxyribonuclease I [Vibrio cholerae 623-39] gi|262191424|ref|ZP_06049612.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93] gi|148874770|gb|EDL72905.1| exodeoxyribonuclease I [Vibrio cholerae 623-39] gi|262032713|gb|EEY51263.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93] Length = 474 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|167623714|ref|YP_001674008.1| exonuclease I [Shewanella halifaxensis HAW-EB4] gi|167353736|gb|ABZ76349.1| Exodeoxyribonuclease I [Shewanella halifaxensis HAW-EB4] Length = 493 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 205/471 (43%), Positives = 288/471 (61%), Gaps = 7/471 (1%) Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +DYETFG + A DRP+QFAGVR D I E F+CK A+DYLP PEA+ Sbjct: 26 MSEHPTIFWHDYETFGANPAKDRPSQFAGVRTDLDLNIIGEPETFYCKLANDYLPSPEAI 85 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ITGITPQ A G+ EAEF +I+ FS P TC++GYN++RFDD SR FYRNF D Y Sbjct: 86 LITGITPQLANLKGMPEAEFMDKINGLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPY 145 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 W NGN+RWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H AHDA Sbjct: 146 AREWQNGNTRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAM 205 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 +DVYAT+ + LI+ +PKLF+Y + R K Q+ KLID+ M PLVHVS A T Sbjct: 206 SDVYATIDMAKLIKTVQPKLFDYYFSLRQKQQVSKLIDVLEMKPLVHVSSKISALNGCTT 265 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 +IAPVA+H K++VI NL+ D+ +L ++ +R++T +L +P+ +K+VH+ Sbjct: 266 IIAPVAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQVHI 325 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 NK P + + E+ R D E L+Q LR++ A+++ + S + D D Sbjct: 326 NKSPFIAAANTLTDENAARLDFDKAFAREQFRKLKQHPELREKLVAVFDVEHDSKAVDPD 385 Query: 358 SQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 LY GFF+ D+ ++ I T P L+ L L F D RL E+ FRYRARN+P TL + E Sbjct: 386 QALYSGGFFSSADKAKIEIIRNTKPSNLAALELDFDDSRLAEMLFRYRARNYPETLDDSE 445 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + W E + L +Y +L++L E + DE K+ L+ AL YL+ + Sbjct: 446 QYRWREFCQTRLND---PDYIIRLENLLEETEQDESKQKLLQALCHYLRNL 493 >gi|254226438|ref|ZP_04920025.1| exodeoxyribonuclease I [Vibrio cholerae V51] gi|125621060|gb|EAZ49407.1| exodeoxyribonuclease I [Vibrio cholerae V51] Length = 474 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYTGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|153801904|ref|ZP_01956490.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3] gi|124122549|gb|EAY41292.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3] Length = 474 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQRGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQERGFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|297578829|ref|ZP_06940757.1| exodeoxyribonuclease I [Vibrio cholerae RC385] gi|297536423|gb|EFH75256.1| exodeoxyribonuclease I [Vibrio cholerae RC385] Length = 474 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 304/469 (64%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTGLIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|229525835|ref|ZP_04415240.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426] gi|229339416|gb|EEO04433.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426] Length = 478 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 220/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 249 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477 >gi|54308882|ref|YP_129902.1| exonuclease I [Photobacterium profundum SS9] gi|46913312|emb|CAG20100.1| putative exonuclease I [Photobacterium profundum SS9] Length = 474 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 227/466 (48%), Positives = 304/466 (65%), Gaps = 3/466 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 DYETFG A DR QFAGVR D + I V +CKP DYLP PEA ITG Sbjct: 7 PTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGKPLVIYCKPPVDYLPSPEACLITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+A G+ E EF +IH S PNTC+IGYNN+RFDD +R YRNFYD Y W W Sbjct: 67 ITPQEAQEKGLPEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWGW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWDLLD+MR YA P+G+ WP+ D+G SFKL+ L++ANGIEH NAHDA ADVY Sbjct: 127 QNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADVY 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ L +++ +PKLF YL+D R+K +L++LIDI N+TPLVHVSGMFG NT+ I P Sbjct: 187 ATIELAKILKTNQPKLFNYLFDLRHKRKLQELIDIVNLTPLVHVSGMFGVGCGNTSWIVP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301 +AWHP K++VI NL+ D +LD+ Q+ +R++T ELK +P+P+K VHLNKCP Sbjct: 247 MAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 +L P K E +R GID +CL+NL +L++ +R++ AI+ + + DVDS L Sbjct: 307 VLAPAKTLKAEDADRIGIDRAQCLKNLQILKEHPEVREKLVAIFAVQREYKENTDVDSML 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR +D I + PE L+ + L D+R+ L FRYRARNFP TL+ +E+Q W Sbjct: 367 YDGFFSTSDRSSIDIIRESTPEALAEIKLNVEDKRIKPLLFRYRARNFPMTLNYEEQQKW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 H + + + Y ++++ E + +E K ++ ALY+Y+ Sbjct: 427 KHHCQD-FFQDNLPAYMENFEAVATENQSNEHKMKILKALYDYINN 471 >gi|37526737|ref|NP_930081.1| exonuclease I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786169|emb|CAE15221.1| exodeoxyribonuclease I (exonuclease I) (DNA deoxyribophosphodiesterase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 476 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 247/469 (52%), Positives = 326/469 (69%), Gaps = 2/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQHPALDRPAQFAGVRTDMDFNIIEEPLVIYCSPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EAEF+R+IH FSVPN+CI+GYNNIRFDD SRNIFYRNFYD Y +S Sbjct: 67 GITPQIALEKGVNEAEFARQIHNAFSVPNSCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA P+GI WP ++G SFKL+ L ANG+EH +AHDA +DV Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIIWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++E +P++F Y + RNK ++ LIDI M PLVHVSGMFGA+RSN +L+A Sbjct: 187 YATIAMAKLLKEVQPRMFNYFFQLRNKQKINALIDIPQMKPLVHVSGMFGAARSNLSLVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300 P+AWHP +++VI C+L+GD+ +LD+ L +RL+T HDEL+ PVPIK VH+NKC Sbjct: 247 PLAWHPANQNAVIVCDLAGDISPLLELDADALRERLYTRHDELQPDQPPVPIKLVHINKC 306 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359 PI+ P + + E ER G+D C NL +L+ +R++ ++ + S +VD++ Sbjct: 307 PIVAPDNTLRTEDAERIGLDRDYCGRNLAILQNNPQIREKVVELFAEAEPFPESNNVDTK 366 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ D+ M+ I T P+ L L+L F D R+ L FRYRARN+P TL+ E+Q Sbjct: 367 LYDGFFSSADKAAMNIIRETLPQNLPALDLTFQDSRIKTLLFRYRARNYPTTLTYDEQQH 426 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 WL HR+++ T+ ++ EY ++ L EY+G+E K + AL EY + Sbjct: 427 WLRHRQEIFTQDKLSEYFFIIEQLFTEYQGNEEKCRQLKALMEYAVQLA 475 >gi|229521349|ref|ZP_04410768.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80] gi|229341447|gb|EEO06450.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80] Length = 478 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477 >gi|153212250|ref|ZP_01948038.1| exodeoxyribonuclease I [Vibrio cholerae 1587] gi|124116628|gb|EAY35448.1| exodeoxyribonuclease I [Vibrio cholerae 1587] Length = 474 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 218/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +L++ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELNAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|212635816|ref|YP_002312341.1| exonuclease I [Shewanella piezotolerans WP3] gi|212557300|gb|ACJ29754.1| Exodeoxyribonuclease I [Shewanella piezotolerans WP3] Length = 470 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 207/468 (44%), Positives = 291/468 (62%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +DYETFG + A DRP+QFAGVR D + I+ F+CK A+DYLP PEA+ IT Sbjct: 6 QNTLFWHDYETFGANPAKDRPSQFAGVRTDMELNIIDEPVTFYCKLANDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A + G EAEF ++HQ FS NTC++GYN+IRFDD SR FYRNF+D Y Sbjct: 66 GITPQLANQKGTPEAEFMAKVHQQFSQENTCVVGYNSIRFDDEVSRYGFYRNFFDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++RA YAF PDGI WP ++DG+ SFKL+ L +ANG+ H AHDA +DV Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPDGINWPQKEDGSPSFKLEQLTVANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + LI+ +PKLF+Y + R K ++ KLID+ M PLVHVS A T LIA Sbjct: 186 YATIGMAKLIKSVQPKLFDYYFSLRKKQEVSKLIDVLAMKPLVHVSSKISALNGCTTLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A+H K++VI NL+ D+ +L + Q+ +R++T ++L + +P+ +K++H+NK Sbjct: 246 PLAYHSTNKNAVICVNLAMDVTPLIELTAEQIRERMYTRREDLAEDELPIGLKQIHINKS 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P L ++ R ID E LR +R++ A+++ D D QL Sbjct: 306 PFLAGAKTLTDDNAARLDIDKAFAREQYKKLRLHPEIREKLVAVFDLQSDREIADPDLQL 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P L+ L L F D RLPE+ FRYRARN+P TL++ E Sbjct: 366 YSGGFFSQADKAKMEMIRNTKPMNLAALELTFDDERLPEMLFRYRARNYPETLNDSELLR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L +Y +L+++ E + +E K+ L+ AL YL+ + Sbjct: 426 WREFCQPRLND---PDYMIRLENIIEETEQNESKQKLLQALCHYLRSI 470 >gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP 102761] gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP 102761] Length = 473 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 226/467 (48%), Positives = 305/467 (65%), Gaps = 3/467 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 DYETFG A DRP QFAG+R D I V +CKP DYLP PEA ITG Sbjct: 7 PSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPEACLITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+A G+ E EF RIH+ S PNTC++GYNN+RFDD +R YRNFYD Y WSW Sbjct: 67 ITPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYDPYGWSW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNSRWDLLD+MR YA PDGI WP+ D+G SFKL+ L++ANGIEH NAHDA ADVY Sbjct: 127 QQGNSRWDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIEHSNAHDAMADVY 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + L+++ +PKLF+YL++ R+KN+L++LID+ N+TPLVHV+GMFG NT+ I P Sbjct: 187 ATIEMAKLVKQNQPKLFDYLFNNRHKNKLQQLIDVVNLTPLVHVTGMFGTVCGNTSWIVP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 +AWHP K++VI NL+ D +LDS + RL+T +L +P+P+KEVHLNKCP Sbjct: 247 IAWHPDNKNAVITINLAQDPTPLIELDSETIRTRLYTKRADLAADELPIPLKEVHLNKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 IL P +R ID ++CL+NL L++Q +R++ +++ K + +VD+ L Sbjct: 307 ILAPAKTLTANDADRLDIDREQCLKNLALIKQHPEIREKVLEVFSVKREFDNHDNVDAML 366 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ DR MD I TAPE+L+ L L +D+R+ L FRYRARNFP TLS +E+ W Sbjct: 367 YDGFFSHADRVAMDIIRETAPEELANLQLEVADKRIKPLLFRYRARNFPMTLSYEEQTRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 H + + I Y + ++ + + DE K +++ L +Y+ + Sbjct: 427 KHHCQDYF-EANIPRYMENFEQVALDNQSDENKMAILHKLGQYISTL 472 >gi|254291686|ref|ZP_04962473.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226] gi|150422370|gb|EDN14330.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226] Length = 474 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRDRHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYLLNLENLVHEHQADPKKIAILKSVYHYVEKLA 473 >gi|229505177|ref|ZP_04394687.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286] gi|229511152|ref|ZP_04400631.1| exodeoxyribonuclease I [Vibrio cholerae B33] gi|229518270|ref|ZP_04407714.1| exodeoxyribonuclease I [Vibrio cholerae RC9] gi|229608197|ref|YP_002878845.1| exonuclease I [Vibrio cholerae MJ-1236] gi|229344985|gb|EEO09959.1| exodeoxyribonuclease I [Vibrio cholerae RC9] gi|229351117|gb|EEO16058.1| exodeoxyribonuclease I [Vibrio cholerae B33] gi|229357400|gb|EEO22317.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286] gi|229370852|gb|ACQ61275.1| exodeoxyribonuclease I [Vibrio cholerae MJ-1236] Length = 478 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRR 429 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477 >gi|147788|gb|AAA19938.1| exonuclease I [Escherichia coli] Length = 466 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 240/475 (50%), Positives = 322/475 (67%), Gaps = 16/475 (3%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 HDA ADVYAT+A+ L++ ++P+LF+YL+ LID+ +M PLVHVSGMFGA R Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLF---------ALIDVPHMKPLVHVSGMFGAWR 231 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K Sbjct: 232 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 291 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353 VH+NKCP+L + + E +R GI+ + CL+NL +LR+ R++ AI+ + + S Sbjct: 292 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQEREKVVAIFAEAEPFTPS 351 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +VD+QLY+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL Sbjct: 352 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 411 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+Q WLEHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + + Sbjct: 412 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIA 466 >gi|229529683|ref|ZP_04419073.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)] gi|229333457|gb|EEN98943.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)] Length = 478 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 218/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ +++ANGIEH NAHDA ADV Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHISVANGIEHSNAHDAMADV 189 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQDSDVDSQ 369 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 430 WAAHCRDYF-ERNLEGYMVNLENLVHEHQADPKKMAILKSVYHYVEKLA 477 >gi|15641247|ref|NP_230879.1| exonuclease I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591211|ref|ZP_01678513.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80] gi|121728822|ref|ZP_01681834.1| exodeoxyribonuclease I [Vibrio cholerae V52] gi|147674379|ref|YP_001216801.1| exonuclease I [Vibrio cholerae O395] gi|153819174|ref|ZP_01971841.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457] gi|153823017|ref|ZP_01975684.1| exodeoxyribonuclease I [Vibrio cholerae B33] gi|227081406|ref|YP_002809957.1| exodeoxyribonuclease I [Vibrio cholerae M66-2] gi|254848359|ref|ZP_05237709.1| exonuclease I [Vibrio cholerae MO10] gi|255745633|ref|ZP_05419581.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101] gi|262159091|ref|ZP_06030203.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1] gi|262169449|ref|ZP_06037141.1| exodeoxyribonuclease I [Vibrio cholerae RC27] gi|298498672|ref|ZP_07008479.1| exonuclease I [Vibrio cholerae MAK 757] gi|9655715|gb|AAF94393.1| exodeoxyribonuclease I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546936|gb|EAX57085.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80] gi|121628910|gb|EAX61366.1| exodeoxyribonuclease I [Vibrio cholerae V52] gi|126510260|gb|EAZ72854.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457] gi|126519445|gb|EAZ76668.1| exodeoxyribonuclease I [Vibrio cholerae B33] gi|146316262|gb|ABQ20801.1| exodeoxyribonuclease I [Vibrio cholerae O395] gi|227009294|gb|ACP05506.1| exodeoxyribonuclease I [Vibrio cholerae M66-2] gi|227013151|gb|ACP09361.1| exodeoxyribonuclease I [Vibrio cholerae O395] gi|254844064|gb|EET22478.1| exonuclease I [Vibrio cholerae MO10] gi|255736708|gb|EET92105.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101] gi|262022262|gb|EEY40971.1| exodeoxyribonuclease I [Vibrio cholerae RC27] gi|262029276|gb|EEY47928.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1] gi|297543005|gb|EFH79055.1| exonuclease I [Vibrio cholerae MAK 757] Length = 474 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ ++ + + DVDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|293395284|ref|ZP_06639569.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582] gi|291422241|gb|EFE95485.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582] Length = 453 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 243/451 (53%), Positives = 326/451 (72%), Gaps = 2/451 (0%) Query: 20 DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 DRPAQFAGVR D + IE V +C PADDYLPDPEAV ITGITPQ+AL GV EAEF+ Sbjct: 2 DRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPEAVMITGITPQEALAKGVCEAEFA 61 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 R+IHQ FSVP TCI+GYNNIRFDD SRNIFYR+FYD Y +SW NGNSRWDLLDVMRA Y Sbjct: 62 RQIHQAFSVPGTCIVGYNNIRFDDEVSRNIFYRSFYDPYAYSWQNGNSRWDLLDVMRACY 121 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 A P+GI WP DDG SF+L+ L ANG+ H AHDA +DV+AT+A+ L+R+ +P+LF Sbjct: 122 ALRPEGIVWPENDDGFPSFRLEHLTRANGVAHEQAHDAMSDVHATIAMAKLVRQAQPRLF 181 Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259 +YL +RNK++L L+DI MTPLVHVSGMFGA+RSNT+ +AP+AWHP K+++I C+L+ Sbjct: 182 DYLLQHRNKHKLNALVDIAEMTPLVHVSGMFGAARSNTSWVAPLAWHPDNKNALIVCDLA 241 Query: 260 GDMRVFQDLDSVQLAKRLFTSHDELKGLVPV-PIKEVHLNKCPILMPIDYCKKEHFERWG 318 GDM +LD+ QL +RL+T D L P PIK VH+NKCP+L P E+ +R G Sbjct: 242 GDMTPLLELDADQLRERLYTRRDRLSADRPPVPIKLVHINKCPVLAPAKTLLPENADRLG 301 Query: 319 IDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRIL 377 ID + CL NL +LRQ +R++ A+Y ++S DVD++LYDGFF+D D+ M I Sbjct: 302 IDRQACLNNLQILRQHPQVREKVVALYADAEPFAASDDVDARLYDGFFSDADKAAMKIIQ 361 Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYK 437 +T P+ L L+L F+D R+ EL FR+RARN+P+TL + E++ WL+HR+ L+ +++ Y Sbjct: 362 QTKPQNLPALDLTFNDDRMQELLFRFRARNYPNTLDDGEQRRWLQHRQTALSAEKVQSYV 421 Query: 438 NKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +L++L ++ D K L+ +L++Y + ++ Sbjct: 422 LQLEALYNLHEADSAKLALLKSLFDYGKQLV 452 >gi|217973824|ref|YP_002358575.1| exonuclease I [Shewanella baltica OS223] gi|217498959|gb|ACK47152.1| Exodeoxyribonuclease I [Shewanella baltica OS223] Length = 470 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 210/468 (44%), Positives = 288/468 (61%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG + A DRP+QFAG+R D I E F+CK DYLP PEA+ IT Sbjct: 6 QPSIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQTPDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y Sbjct: 66 GITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+ Sbjct: 186 YATIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLIS 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKC Sbjct: 246 PVAHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + EH R GID + E L+ LR++ ++ + ++ D D L Sbjct: 306 PFITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q Sbjct: 366 YSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L ++Y KL++L + + DE K+ L+ AL YL+ + Sbjct: 426 WREFCQSRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 470 >gi|117921013|ref|YP_870205.1| exonuclease I [Shewanella sp. ANA-3] gi|117613345|gb|ABK48799.1| Exodeoxyribonuclease I subunit C [Shewanella sp. ANA-3] Length = 470 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 210/468 (44%), Positives = 289/468 (61%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG + A DRPAQFAG+R D I E F+CK + DYLP PEA+ IT Sbjct: 6 QPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y Sbjct: 66 GITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIA Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA HP K+++I NL+ D+ +LD Q+ R++T EL +P+P+K+VHLNKC Sbjct: 246 PVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + ER ID E L+ LR++ ++ ++ D D L Sbjct: 306 PFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L+ ++Y KL++L + +GDE K+ L+ AL YL+ + Sbjct: 426 WRTFCQQRLSD---QDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470 >gi|126173926|ref|YP_001050075.1| exonuclease I [Shewanella baltica OS155] gi|125997131|gb|ABN61206.1| Exodeoxyribonuclease I subunit C [Shewanella baltica OS155] Length = 472 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 211/466 (45%), Positives = 289/466 (62%), Gaps = 5/466 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PV Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + EH R GID + E L+ LR++ ++ + ++ D D LY Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369 Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 E + L ++Y KL++L + + DE K+ L+ AL YL+ + Sbjct: 430 EFCQSRLAD---QDYVLKLENLLQDTQVDETKQKLLAALCHYLREL 472 >gi|89074290|ref|ZP_01160780.1| putative exonuclease I [Photobacterium sp. SKA34] gi|89049994|gb|EAR55528.1| putative exonuclease I [Photobacterium sp. SKA34] Length = 473 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 228/467 (48%), Positives = 308/467 (65%), Gaps = 3/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGI Sbjct: 8 TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+A+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W Sbjct: 68 TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD+MR YA P+GI WP D+ SFKL+ L++ANGIEH NAHDA ADVYA Sbjct: 128 NGNSRWDLLDIMRTCYALRPEGINWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ L +I+ +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG NT+ I P+ Sbjct: 188 TIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPM 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP K++VI NL+ D +L++ QL RL+T +L +PVP+KEVHLNKCP+ Sbjct: 248 AWHPDNKNTVITVNLALDPTPLIELNADQLRNRLYTKRVDLAPDELPVPVKEVHLNKCPV 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361 L P K E R GID ++CL+NL L++Q +R++ + + K +++ +VD+ LY Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMVSVKREYAANDNVDAMLY 367 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF+ DR MD I T P+QL++L + D+R+ L FRYRARNFP TLS +E+ W Sbjct: 368 DGFFSTADRSTMDIIRETTPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 H + + +Y ++++ E++ DE K ++ +LY+Y+ ++ Sbjct: 428 HHCQD-FFEMNMTKYMENFEAVAYEHESDESKMKVLQSLYDYVSKLV 473 >gi|262402419|ref|ZP_06078980.1| exodeoxyribonuclease I [Vibrio sp. RC586] gi|262351201|gb|EEZ00334.1| exodeoxyribonuclease I [Vibrio sp. RC586] Length = 474 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 220/469 (46%), Positives = 308/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA YA P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVIRACYALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIMVDLGKDPQPLLDLDADALQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ E+ GID ++CL +L ++RQ +R++ ++ + + +VDSQ Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+ DR M+ I T+P+ L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLEIKVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473 >gi|153000207|ref|YP_001365888.1| exonuclease I [Shewanella baltica OS185] gi|151364825|gb|ABS07825.1| Exodeoxyribonuclease I [Shewanella baltica OS185] Length = 472 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 211/466 (45%), Positives = 288/466 (61%), Gaps = 5/466 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYVREWQ 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PV Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + EH R GID E L+ LR++ ++ + ++ D D LY Sbjct: 310 ITSAKILSDEHAARLGIDKAFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369 Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 E + L ++Y KL++L + + DE K+ L+ AL YL+ + Sbjct: 430 EFCQSRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472 >gi|307825107|ref|ZP_07655328.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96] gi|307733855|gb|EFO04711.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96] Length = 501 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 190/472 (40%), Positives = 278/472 (58%), Gaps = 12/472 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F +DYETFG D D+P QFAG+R D + ++ V +CKPA+D LP PEA IT Sbjct: 4 TQTFYWHDYETFGTDPQRDKPVQFAGIRTDFDFNVVDDPLVVYCKPAEDCLPHPEACLIT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A + GV EAEF R IH+ + PNTC +GYN++RFDD +RN YRNFYD Y Sbjct: 64 GITPQLAEQKGVCEAEFIRLIHEQLAQPNTCTLGYNSLRFDDEVTRNCLYRNFYDPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDL+DV+RA A PDGI WP ++G SF+L L N I H AHDA +DV Sbjct: 124 WQNGNSRWDLIDVVRATRALRPDGIVWPVNEEGGPSFRLDQLTRVNNIAHEAAHDALSDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YATLA+ L+++ +PKL+++L +R K + L+ + + P+VHVSG + A ++ A++ Sbjct: 184 YATLAITKLVKQAQPKLYQFLLRHRVKGEALNLLQLGSFKPVVHVSGKYPAVKNCLAVVL 243 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ HP + +I +LS D L ++ +R+FT+ +L +G+ +P+K VH+NKC Sbjct: 244 PICKHPTNANGIIVYDLSVDPEPMLGLAVEEIQQRIFTATADLPEGVARIPLKTVHINKC 303 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT--SSSQDVDS 358 P+L P+ + E +R ID C N+ ++ L + A+++ S Sbjct: 304 PVLAPVSVIRPEDAQRLEIDLALCHANIDKIKAAVGLSENLAAVFSGQAYVVQDSDPDLE 363 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 GFF++ D++ M +I PEQL+ F+D RL E+ FRYRARN+P TL+ E + Sbjct: 364 IYSGGFFSENDKKQMIKIRSMQPEQLTKSVFKFTDSRLSEMLFRYRARNYPETLNTDELR 423 Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 W E LT + +++Y ++L LS + + +I+AL +Y Sbjct: 424 RWNEFCVNRLTGRQAGGGIVLDDYFSRLAELSRDENKNT---KIIDALEDYA 472 >gi|304409797|ref|ZP_07391417.1| Exodeoxyribonuclease I [Shewanella baltica OS183] gi|307304154|ref|ZP_07583907.1| Exodeoxyribonuclease I [Shewanella baltica BA175] gi|304352315|gb|EFM16713.1| Exodeoxyribonuclease I [Shewanella baltica OS183] gi|306913052|gb|EFN43475.1| Exodeoxyribonuclease I [Shewanella baltica BA175] Length = 472 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 211/466 (45%), Positives = 289/466 (62%), Gaps = 5/466 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTHANGLSHEKAHDAMSDVYA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PV Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + EH R GID + E L+ LR++ ++ + ++ D D LY Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRTTIDPDLMLYS 369 Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 E + L ++Y KL++L + + DE K+ L+ AL YL+ + Sbjct: 430 EFCQNRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472 >gi|160874834|ref|YP_001554150.1| exonuclease I [Shewanella baltica OS195] gi|160860356|gb|ABX48890.1| Exodeoxyribonuclease I [Shewanella baltica OS195] gi|315267073|gb|ADT93926.1| Exodeoxyribonuclease I [Shewanella baltica OS678] Length = 472 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 211/466 (45%), Positives = 288/466 (61%), Gaps = 5/466 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A GV E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W Sbjct: 70 TPQLANLKGVPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+ V Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISTV 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP Sbjct: 250 AHHPNNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + EH R GID + E L+ LR++ ++ + ++ D D LY Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369 Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 E + L ++Y KL++L + + DE K+ L+ AL YL+ + Sbjct: 430 EFCQNRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472 >gi|330720654|gb|EGG98904.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC2047] Length = 478 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 203/472 (43%), Positives = 292/472 (61%), Gaps = 8/472 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F YD+ETFG D DRP QFAG+R D Q+ I +VFFCKPADD LP PEA ITGI Sbjct: 2 SFYWYDFETFGADPFRDRPCQFAGIRTDEQFNIIGDPDVFFCKPADDVLPHPEACLITGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+AL++GV EAEF RIH+ F+ P TC+ GYN+IRFDD +RN YRNFYD Y W Sbjct: 62 TPQQALKEGVSEAEFIARIHEQFAEPGTCVAGYNSIRFDDEVTRNALYRNFYDPYAREWQ 121 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +GNSRWD++D++R A P+GI WP +DG+ SFKL+ L ANGI H AHDA +DV+A Sbjct: 122 HGNSRWDIIDMVRLTRALRPEGINWPEHEDGSPSFKLEQLTAANGISHEAAHDALSDVWA 181 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ L LI+ K+PKL++Y+Y +R+K + + +++ P++H+S MF A R A++ P+ Sbjct: 182 TIELAKLIKTKQPKLYDYVYKHRDKRLVDQQLNVVAQKPVLHISSMFPADRGCAAIVVPL 241 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A K++V +LS D L + Q+A+R+FT +++ +G+ VPIK VH+NKCPI Sbjct: 242 ARDVVNKNAVYVYDLSVDPEPLLRLSAEQIAERIFTRREDMPEGVERVPIKAVHINKCPI 301 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P++ E ER GID C NL ++ + ++ +A+++ + D D LY Sbjct: 302 VAPVNVVSAEAAERLGIDLTACRANLEHIKAAAGIAEKVQAVFSSREFETPDDPDQALYS 361 Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF+ DRQ+M+ + + PEQLS LPF D RLP++ FRYRARN+P TLS+ E+ W Sbjct: 362 GGFFSSHDRQLMEELRQMTPEQLSAAKLPFRDARLPDMLFRYRARNYPATLSDDERAQWQ 421 Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 R+ ++ Y ++ L + ++ ++ L Y + Sbjct: 422 VFRRSCFDDEKIGSRLTLDSYYQRIDELMNAPQTTLEQKQILIQLQAYGVSL 473 >gi|258620230|ref|ZP_05715269.1| exodeoxyribonuclease I [Vibrio mimicus VM573] gi|258587588|gb|EEW12298.1| exodeoxyribonuclease I [Vibrio mimicus VM573] Length = 474 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 309/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ E+ GID ++CL +L ++RQ +R++ ++ + + +VDSQ Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473 >gi|258624410|ref|ZP_05719357.1| exodeoxyribonuclease I [Vibrio mimicus VM603] gi|258583257|gb|EEW08059.1| exodeoxyribonuclease I [Vibrio mimicus VM603] Length = 474 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 218/469 (46%), Positives = 309/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAH+A ADV Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHNAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ E+ GID ++CL +L ++RQ +R++ ++ + + +VDSQ Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473 >gi|262165491|ref|ZP_06033228.1| exodeoxyribonuclease I [Vibrio mimicus VM223] gi|262025207|gb|EEY43875.1| exodeoxyribonuclease I [Vibrio mimicus VM223] Length = 474 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 306/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDVDSQ 359 PIL P E+ E+ GID ++CL +L ++RQ +R++ + + +VDSQ Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+ DR M+ I T+P+ L +L + +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473 >gi|124266553|ref|YP_001020557.1| exonuclease I [Methylibium petroleiphilum PM1] gi|124259328|gb|ABM94322.1| Exodeoxyribonuclease I subunit C [Methylibium petroleiphilum PM1] Length = 479 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 186/478 (38%), Positives = 271/478 (56%), Gaps = 11/478 (2%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ F +DYETFGR DRPAQFAGVR D + +I + +C+PA D+LPDPE+ Sbjct: 1 MSEHSFYWHDYETFGRWPRRDRPAQFAGVRTDAELNEIGPPLMHYCQPAPDFLPDPESCL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI PQ L G+ E F+ I + + P T +GYN IRFDD +R++F+RN D Y Sbjct: 61 LTGILPQTCLEQGLPEHAFAAAIERELAAPGTVGVGYNTIRFDDEVTRHLFWRNLMDPYA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W NG RWDLLDV+R YA P+GI+WP +DG SFKL+ L ANG+ H AHDA + Sbjct: 121 REWQNGCGRWDLLDVVRCTYALRPEGIEWPRHEDGRASFKLEHLTAANGLAHEAAHDALS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV AT+ L LIR +P+L+++ + K+ + I P +H+SGM+ A R A Sbjct: 181 DVRATIGLARLIRRHQPRLWDFCFRLHRKDAVMAEIGAGARRPFLHISGMYPAERGCLAA 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298 + P+ HP K+ +I +L+ D LD+ + +RLFT ++L +G +PIK +H+N Sbjct: 241 VWPLGAHPTNKNELIVWDLAADPSELYGLDAAAIRQRLFTKAEDLPEGTTRLPIKSIHIN 300 Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDV 356 K PI++ + ERWG D R + + L R + ++ +P + DV Sbjct: 301 KSPIVIGNLKTLSPAMAERWGYDAARVQRHADIALAHDALPRALWADVFARPAPEQAPDV 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D LY GF ++ DR+ ++R+ PE L+ F D RL EL FRYRARNFP TL +E Sbjct: 361 DEDLYGGFVSNADRRTLERLRGLPPEGLAGQRPSFEDGRLEELLFRYRARNFPDTLDAEE 420 Query: 417 KQDWLEHRKKMLT-----RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 + W +HR + L S + + ++ +LS DE + ++ ALY+Y + + P Sbjct: 421 RAQWEQHRAERLHLGVGGGSSLAAFFERIDALSE--SADERGQDILGALYDYAEQIAP 476 >gi|197263773|ref|ZP_03163847.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242028|gb|EDY24648.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 476 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 247/468 (52%), Positives = 333/468 (71%), Gaps = 1/468 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ L++Y ++ Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKLLWQYATEIV 476 >gi|254362095|ref|ZP_04978217.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213] gi|153093654|gb|EDN74613.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213] Length = 515 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 221/476 (46%), Positives = 300/476 (63%), Gaps = 6/476 (1%) Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M++ F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV Sbjct: 1 MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y Sbjct: 61 MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 +DVYAT+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 + P+AWH +++VI C+LSGDM ++ L +RL+T DEL + +PVP+K VH+ Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELPVPLKLVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 NKCPIL P E+ ER GID CLENL L+ Q + + S + Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + PE L+ L F D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 E+ W +H + + ++ ++ + L ++ + K L+ L Y + + ++ Sbjct: 421 EQIKWQKHCNQQI-EAKAAQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475 >gi|261211043|ref|ZP_05925333.1| exodeoxyribonuclease I [Vibrio sp. RC341] gi|260840018|gb|EEX66618.1| exodeoxyribonuclease I [Vibrio sp. RC341] Length = 474 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 216/469 (46%), Positives = 303/469 (64%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDIDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S P T +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSLGLPEPEFIARIHAELSTPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGMKWPENEDGFTSFKLERLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + +LD+ L RL+T +++L +P+P+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAEALQARLYTHYEDLAPDELPIPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDVDSQ 359 PIL P E+ ++ GID ++CL +L ++RQ +R++ + + +VDSQ Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPQIREKLVSVFSQEREFAKENNVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF+ DR MD I T PE L L++ +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYDGFFSPADRAAMDIIRTTEPENLGNLDIKVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ D K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473 >gi|88859960|ref|ZP_01134599.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2] gi|88817954|gb|EAR27770.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2] Length = 483 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 214/472 (45%), Positives = 299/472 (63%), Gaps = 8/472 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +D+ETFG + DRP+QFAGVR D I + +C+PA DYLP P+A ITGI Sbjct: 12 TIYWHDFETFGANPQKDRPSQFAGVRTDFDLNIIGEPLIIYCQPAPDYLPHPQACLITGI 71 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ AL+ G++EAEF +IHQ F+ PNTC+ GYN+IRFDD SR FYRNFYD Y W Sbjct: 72 TPQHALKHGMIEAEFIAKIHQEFAKPNTCVAGYNSIRFDDEVSRYAFYRNFYDPYAREWQ 131 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWD++D++RA YA P+GIQWP ++DG SF+L+DL ANGIEH AHDA +DV A Sbjct: 132 NGNSRWDIIDLVRACYALRPEGIQWPLKEDGTPSFRLEDLTKANGIEHAAAHDALSDVTA 191 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LI++K+PKL+++ + R K + +L DI NM PLVH S AS+ T IAP+ Sbjct: 192 TIALAKLIKDKQPKLYDFFFKLRFKKAVAELFDIYNMVPLVHTSSKIPASQGCTTWIAPM 251 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A+HP K++VI NL+ D R L + ++ RL+T EL + P+ +K VHLNKCPI Sbjct: 252 AFHPVNKNAVICFNLTHDPRPLLALSADEIRARLYTKRAELAENEQPIGLKLVHLNKCPI 311 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361 + P E+ + GID ++CL NL +L+ LR++ ++ + + S++ D QLY Sbjct: 312 VAPAKTLLPENAAKIGIDREQCLANLAILKAHPELREKVAEVFQSENEFAGSENCDYQLY 371 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GF ++ D+ D I P+QL+TL L F D++ L FRYRARN+PHTL+ E + W Sbjct: 372 AGFTSNADKHKFDIIRAAEPDQLATLGLDFEDKKFDTLLFRYRARNWPHTLTTAELEKWR 431 Query: 422 EHRKKMLT----RSRIE--EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ + L I+ E+ L++L E +G+E ++ ALY Y Q + Sbjct: 432 KYCQNKLMYGEDSPAIDAQEFMMTLENLVHENEGNERNMTILKALYHYAQNL 483 >gi|262171739|ref|ZP_06039417.1| exodeoxyribonuclease I [Vibrio mimicus MB-451] gi|261892815|gb|EEY38801.1| exodeoxyribonuclease I [Vibrio mimicus MB-451] Length = 474 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 218/469 (46%), Positives = 309/469 (65%), Gaps = 3/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP P+A IT Sbjct: 6 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPDAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 GITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKC Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359 PIL P E+ E+ GID ++CL +L ++RQ +R++ ++ + + +VDSQ Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W H + +E Y L++L E++ DE K ++ ++Y Y++ + Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473 >gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ] gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ] Length = 476 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 197/476 (41%), Positives = 281/476 (59%), Gaps = 13/476 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DRP Q AG+R D +I + +C+PADD LP P A + Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP+ G+ EAEF R+H ++P TC GYN++RFDD SR+ YRNF+D Y Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GI WP +G S +L+ L ANGIEH AHDA AD Sbjct: 121 EWQAGNSRWDLIDLLRTAYALRPEGIHWPQE-EGRVSLRLERLTAANGIEHGQAHDALAD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL L+RE++PKL+ YLY R+K ++ I + + PLVHVSG F A R A++ Sbjct: 180 VRATIALARLLRERQPKLYGYLYQLRSKQRVLDQIRL--LRPLVHVSGRFAAERGYLAVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNK 299 P+AWHP ++++I C+L D DLD+ L +RL+ +EL PVP+K VH+N+ Sbjct: 238 LPLAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358 CP+L P+ ++E R +D C + LL +++ IY +S+D + Sbjct: 298 CPVLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKLARIYMGDEFPASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLY GFF + DR++ +++ R PE L N F D RLPEL FRYRARNFP TL+ E + Sbjct: 358 QLYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTAAEGE 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W E ++ L+ + + ++ +L+ L + DE ++ A EY + ++ Sbjct: 418 CWQEFCRRRLSDAAWGAPCTLGDFNVQLEQLLAQA--DEEHRPILVAWREYARQLL 471 >gi|127512540|ref|YP_001093737.1| exonuclease I [Shewanella loihica PV-4] gi|126637835|gb|ABO23478.1| Exodeoxyribonuclease I subunit C [Shewanella loihica PV-4] Length = 482 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 205/467 (43%), Positives = 290/467 (62%), Gaps = 5/467 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +DYETFG + A DRP+QFAG+R D I F+CK A DYLP PEA+ ITG Sbjct: 19 PSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIISEPVTFYCKQASDYLPSPEAILITG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A G+ EAEF RI+ FS PNTC+ GYN++RFDD +R FYRNF+D Y W Sbjct: 79 ITPQLANLKGMPEAEFMARINSEFSQPNTCVAGYNSLRFDDEVTRYGFYRNFFDPYAREW 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD++D++RA YA P+GI WP ++DG+ SFKL+ L AN + H AHDA +DVY Sbjct: 139 QNGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTQANNLSHDKAHDAMSDVY 198 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ LI+E++PKLF+Y ++ R KN++ K ID+ NM PL+HVS A T LIAP Sbjct: 199 ATIAMAKLIKERQPKLFDYYFNLRKKNEVSKQIDVLNMQPLIHVSSKISALHGCTTLIAP 258 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VA H K+++I NL+ D+ +L + ++ +R++T +L +P+ +K++H+NKCP Sbjct: 259 VAHHSTNKNAIICVNLAMDVTPLIELSADEIRERMYTPRVDLASDELPIGLKQLHINKCP 318 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + + +R ID + LRQ +R++ A+++ + + D D QLY Sbjct: 319 FIATAKTLTDGNAQRLEIDKEFARAQYKRLRQHPEIREKLVAVFDTEHGNEISDPDLQLY 378 Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 GFF+ D+ M+ I TAP+ L+ L L F D RLPE+ FRYRARN+P TL + E+Q W Sbjct: 379 SGGFFSHADKSKMEIIRHTAPQHLAALELDFDDERLPEMLFRYRARNYPETLDDTEQQRW 438 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L +Y KL++L + + DE K+ L+ AL YL + Sbjct: 439 RTFCQSRLND---PDYMIKLETLVNDTEADEEKQKLLTALCHYLSNL 482 >gi|239815634|ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110] gi|239802211|gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110] Length = 479 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 194/481 (40%), Positives = 280/481 (58%), Gaps = 14/481 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ +DYETFG DRP+QFA +R D + +I + +CKPA DYLP PEA I Sbjct: 1 MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ L G+ E F+ +I + FS P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 TGITPQLCLERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W N RWDLLDV+R YA PDGI+WP ++DG SFKL+DLA ANG+ H +AHDA +D Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236 V AT+AL LIRE++PKLFE+ + K+++ + + P +HVSGMF R Sbjct: 181 VRATIALARLIRERQPKLFEFAFGLHKKDRVASELGLPAMRETARPFLHVSGMFPVERGC 240 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295 ++ P+A HP K+ +I +L+ D +DLD L RLFT +L +G+V +P+K + Sbjct: 241 LGVMWPLASHPTNKNELIAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVVRLPVKGI 300 Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 HLNK P+++ + ERW +D L + + R ++ + +Y +P + Sbjct: 301 HLNKSPMVVGNLRTLAPAMAERWNVDLDAALRHAAIARDLPDMSAIWSQVYARPKEAVPD 360 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 VD LY GF + DR+ ++++ +PE+L+ F D RL E+ FRYRARN+P LS Sbjct: 361 -VDEDLYGGFVGNGDRRRLNQLRALSPEELAKDRTGFDDGRLEEILFRYRARNWPELLSS 419 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +E + W R L + IE +++ +LS DE E ++ ALYEY + + P Sbjct: 420 EEAERWEALRAARLFKGEGGARTIEMLFSEVDALSE--TADERGEEILGALYEYAEAIAP 477 Query: 470 K 470 + Sbjct: 478 E 478 >gi|325983472|ref|YP_004295874.1| exodeoxyribonuclease I [Nitrosomonas sp. AL212] gi|325532991|gb|ADZ27712.1| Exodeoxyribonuclease I [Nitrosomonas sp. AL212] Length = 478 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 190/475 (40%), Positives = 270/475 (56%), Gaps = 7/475 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT F +DYETFG D DRPAQFAGVR D +I + +CKP D+LP PEA + Sbjct: 1 MTMTFYWHDYETFGADPRRDRPAQFAGVRTDEALNEIGEPLMIYCKPTRDFLPHPEACLL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A G+ E EF RIH + P TC +GYN++RFDD +R YRNFYD Y Sbjct: 61 TGITPQLADAQGLPEPEFIARIHAELAQPGTCGVGYNSLRFDDEVTRFTLYRNFYDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWD++D++R YA P GI WP +DG SFKL+DL ANGI H +AHDA +D Sbjct: 121 EWQQGNSRWDIIDLVRMTYALRPAGITWPQHEDGQPSFKLEDLVAANGIWHESAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V T+AL L+R ++P+LF++L R+K + +D+ P++H + M+ A T+LI Sbjct: 181 VRVTIALARLLRMQQPRLFDWLLQLRDKRKAAAQLDLITHNPVLHTTRMYPAKTGCTSLI 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ P +S++ +L D +F L++ LA LFT +D+L +G+ +P+K + +NK Sbjct: 241 MPLIVEPGNNNSILVYDLRHDPEMFLPLNADDLAPLLFTRNDDLPEGMQRLPVKSIKINK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 CP L P + E ER +D C + L + R Y SS DVD Sbjct: 301 CPALAPRNTLDNETAERIALDLDVCYRHWQTLCAMPDFFQRVATAYTSRTFESSSDVDVA 360 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF + D ++++I +P+QL + F D+RL EL FRYRARN+P TL E + Sbjct: 361 LYDGFLDNADAALLEQIRAASPQQLGEMQFNFHDKRLSELLFRYRARNWPETLKPAEAER 420 Query: 420 WLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W R + LT +E+ ++ L K D E +++A+ ++ ++ Sbjct: 421 WELLRLQRLTQADGGGSITFDEFSTQIALLREARKTDGQAEQILDAVEDWGNDLL 475 >gi|261492018|ref|ZP_05988593.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312301|gb|EEY13429.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 515 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 221/476 (46%), Positives = 300/476 (63%), Gaps = 6/476 (1%) Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M++ F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV Sbjct: 1 MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y Sbjct: 61 MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 +DVYAT+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 + P+AWH +++VI C+LSGDM ++ L +RL+T DEL + + VP+K VH+ Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 NKCPIL P E+ ER GID CLENL L+ Q + + S + Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + PE L+ L F D R+ L F YRAR++P TLS Sbjct: 361 VENTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 E+ W +H + + ++ E++ + L ++ + K L+ L Y + + ++ Sbjct: 421 EQIKWQKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475 >gi|332531005|ref|ZP_08406927.1| exonuclease I [Hylemonella gracilis ATCC 19624] gi|332039566|gb|EGI75970.1| exonuclease I [Hylemonella gracilis ATCC 19624] Length = 488 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 195/487 (40%), Positives = 275/487 (56%), Gaps = 17/487 (3%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F +DYETFG + DRP+QFAG+R D +I + +C+PADDYLPDP A + Sbjct: 1 MALTFFWHDYETFGVNPRRDRPSQFAGIRTDADLNEIGEPVMLYCRPADDYLPDPGACLL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ L GV E EF+ RI + P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 TGITPQTCLEHGVPEHEFAARIEHELAQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR----DDGATSFKLQDLALANGIEHVNAHD 176 W N SRWDLLDV+R A P+GI+WP G SFKL+ L ANG+ H AHD Sbjct: 121 EWQNECSRWDLLDVVRLCRALRPEGIEWPMHREGEMKGKPSFKLEHLTAANGLSHEAAHD 180 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGA 232 A +DV AT+AL LIR+K+P+LF++ R K+ + P +HVSGMF A Sbjct: 181 ALSDVRATIALARLIRDKQPRLFDFALALRKKDAVAAELGLPTSQAQARPFLHVSGMFPA 240 Query: 233 SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVP 291 R +L+ P+A HP K+ +I +LS D L + RL+T D+L +G+ +P Sbjct: 241 ERGCLSLMWPLATHPTNKNELIAWDLSADPAELAHLTVDDIRLRLYTRTDDLPEGVSRLP 300 Query: 292 IKEVHLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350 IK VHLNK P+++ + + E +RWG+D L N + R+ ++ + ++ +P Sbjct: 301 IKSVHLNKSPMVVSNLKTLRPELAQRWGLDLDAALRNAAVARELPDMSALWPQVFQRPAQ 360 Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410 + + DVD LY GF + DR+ + R+ P++L+T F D RL ++ FRYRARNFP Sbjct: 361 AGTPDVDEDLYGGFVGNEDRRRLARLRALPPQELATSRAGFDDARLGDILFRYRARNFPD 420 Query: 411 TLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEY 463 TL+E E+ WL HR L ++ +L L + +GDE E ++ ALY Y Sbjct: 421 TLNEDEQARWLAHRVARLVEGADGARNLDALFAELDRLGQDATEQGDERGEAILEALYAY 480 Query: 464 LQWVIPK 470 + + P+ Sbjct: 481 AEQIAPE 487 >gi|311695266|gb|ADP98139.1| exonuclease I [marine bacterium HP15] Length = 481 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 209/479 (43%), Positives = 291/479 (60%), Gaps = 10/479 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQKAL DG EAEF +I++ FS P TC++GYN++RFDD +R+ YRN D Y Sbjct: 61 TGITPQKALEDGFPEAEFIAQINEAFSQPGTCVVGYNSLRFDDEVTRHTLYRNLRDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++R YA P+GI WP ++DG+ SFKL++L +ANGI H AHDA +D Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFKLEELTVANGIAHEAAHDAMSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+A+ LI+EK+PKLF+++ ++K+ R ++D M P+ H+S + ASR AL+ Sbjct: 181 VEATIAMAKLIKEKQPKLFDFVLQNKDKHSARAMLDTAAMKPVFHISAKYPASRGCCALV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 APVA HP K+ VI +L D + + Q+ +R+FTS EL +G+ P+K V LNK Sbjct: 241 APVAEHPSNKNLVIVYDLREDPTELINASAEQIRERVFTSQAELGEGVSRFPLKGVQLNK 300 Query: 300 CPILMPIDY---CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 CP+L P + E E +D NL +LR+ +L R +++P+ S D Sbjct: 301 CPVLAPANMLSTLSPERLEELALDGDTLRANLAMLRKAPDLPSRIAEAFDQPHESDLTDP 360 Query: 357 DSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 D QLY G F + DR+ ++ +L E L L + F D RL EL FRYRARN+P +L + Sbjct: 361 DEQLYAGGFISKADREKLNWVLEQPVETLGELEVTFEDDRLQELLFRYRARNYPGSLVGE 420 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E + W E R + L +E + +LQ L+ + + K ++ L+ Y + +IP Sbjct: 421 EMERWEEFRSQRLMHPKKGWRSLEAFAQELQRLAADPELTPQKRHILEDLHLYGESLIP 479 >gi|261494569|ref|ZP_05991051.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309760|gb|EEY10981.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 515 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 221/476 (46%), Positives = 300/476 (63%), Gaps = 6/476 (1%) Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M++ F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV Sbjct: 1 MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y Sbjct: 61 MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 +DVYAT+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 + P+AWH +++VI C+LSGDM ++ L +RL+T DEL + + VP+K VH+ Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 NKCPIL P E+ ER GID CLENL L+ Q + + S + Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + PE L+ L F D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 E+ W +H + + ++ E++ + L ++ + K L+ L Y + + ++ Sbjct: 421 EQIKWQKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475 >gi|24374325|ref|NP_718368.1| exonuclease I [Shewanella oneidensis MR-1] gi|24348874|gb|AAN55812.1|AE015718_4 exodeoxyribonuclease I [Shewanella oneidensis MR-1] Length = 470 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 207/468 (44%), Positives = 284/468 (60%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG + A DRPAQFAG+R D I E F+CK + DYLP PEA+ IT Sbjct: 6 QPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF RIH FS NTC+ GYN++RFDD +R FYRNF D Y Sbjct: 66 GITPQLANLKGLPETEFMGRIHTLFSQANTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A T LIA Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISAMHGCTTLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA HP K+++I NL+ D+ +LD Q+ R++T EL +P+P+K+VHLNKC Sbjct: 246 PVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDELPIPVKQVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + ER ID L+ LR++ ++ +++ D D L Sbjct: 306 PFITSAKILDDAQAERLSIDKAFARGQYKRLKAHPELREKLAQLFEHDGEATTTDPDLML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L ++E Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLDDQESHR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L ++Y KL++L + +GDE K+ L+ AL YL+ + Sbjct: 426 WRTFCQQRLAD---QDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470 >gi|190149982|ref|YP_001968507.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263310|ref|ZP_07544928.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915113|gb|ACE61365.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871372|gb|EFN03098.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 514 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 218/473 (46%), Positives = 304/473 (64%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+V LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMVKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + ++ ++ + SL + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|91788799|ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666] gi|91698024|gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666] Length = 480 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 278/480 (57%), Gaps = 14/480 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG + DRP+QFAG+R D + ++ + +C+PA+DYLPDP + IT Sbjct: 3 PHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLIT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L G+ E F+ +I Q + P T +GYN IRFDD +R +F+RN D Y Sbjct: 63 GITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYARE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R YA P+GI WP+++DG SFKL+DLA ANG+ H AHDA +DV Sbjct: 123 WQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALSDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237 AT+AL LIR+ +PKLF++ K+++ + Q+ TP +HVSGMF R Sbjct: 183 RATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERGCL 242 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 A++ P+A HP K+ ++ +L+ D LD L +RLFT +L +G++ +P+K VH Sbjct: 243 AVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKSVH 302 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LNK P+++ + E +WG+D L N ++ + ++ +P ++ Sbjct: 303 LNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAPD- 361 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF + DR+ ++++ +P +L+ F D RL EL FRYRARNF TL+ + Sbjct: 362 VDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTPE 421 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 E + W HR L ++ ++ +LS DE + ++ ALY+Y + + P+ Sbjct: 422 EAERWEAHRAARLLEGEGGARNVDALFAEIDTLSE--TTDERGQAILGALYDYAEAIAPE 479 >gi|119469387|ref|ZP_01612326.1| exonuclease I [Alteromonadales bacterium TW-7] gi|119447251|gb|EAW28520.1| exonuclease I [Alteromonadales bacterium TW-7] Length = 481 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 212/472 (44%), Positives = 301/472 (63%), Gaps = 8/472 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYET+G D+P+QFAG+R D I + +CKP DYLP PEA ITGI Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A++ G+VEAEF +IH FS PNTC+ GYN+IRFDD SR FYRNFYD Y + Sbjct: 70 TPQVAMKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LI+EK+PKL+ + + RNK L L+D+ NMTPLVH S A++ T +AP+ Sbjct: 190 TIALAKLIKEKQPKLYNFFFGLRNKKALGDLVDVFNMTPLVHTSSRIPATQGCTTWVAPM 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 ++HP K++VI +L+ +V DL+ +L KRL+T +L +G +PV +K VHLNKCPI Sbjct: 250 SFHPVNKNAVICFDLTQSPQVLLDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNKCPI 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361 L P E+ R GID ++CL NL +L+ T+LRD+ ++N+ S++ +VD LY Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDYLLY 369 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF + D+ I P++L+ LNL F D++ L FRYRARN+P TL+++E W Sbjct: 370 DGFTSHADKAKFAIIRDAKPDELAGLNLDFEDKKFNTLLFRYRARNWPETLNQQELDQWR 429 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ + L +++ L++L+ E+ E ++ ALY Y Q + Sbjct: 430 QYCQNKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481 >gi|53729178|ref|ZP_00134021.2| COG2925: Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208153|ref|YP_001053378.1| exonuclease I [Actinobacillus pleuropneumoniae L20] gi|126096945|gb|ABN73773.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 514 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 215/473 (45%), Positives = 301/473 (63%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFA +R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFACIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL + + PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEAVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + ++ ++ + SL + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|303250424|ref|ZP_07336622.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252223|ref|ZP_07534120.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650750|gb|EFL80908.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860145|gb|EFM92161.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 514 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 217/473 (45%), Positives = 303/473 (64%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + ++ ++ + SL + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|146292669|ref|YP_001183093.1| exonuclease I [Shewanella putrefaciens CN-32] gi|145564359|gb|ABP75294.1| Exodeoxyribonuclease I subunit C [Shewanella putrefaciens CN-32] Length = 470 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 212/468 (45%), Positives = 281/468 (60%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ IT Sbjct: 6 QPSIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y Sbjct: 66 GITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++RA YAF PDGI WP +DDG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+ Sbjct: 186 YATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLIS 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA HP K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKC Sbjct: 246 PVAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + R ID E LR LR++ ++ S++ D D L Sbjct: 306 PFITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E Sbjct: 366 YSGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L ++Y KL++L DE K+ L+ AL YL+ + Sbjct: 426 WREFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 470 >gi|237807889|ref|YP_002892329.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187] gi|237500150|gb|ACQ92743.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187] Length = 506 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 219/464 (47%), Positives = 301/464 (64%), Gaps = 2/464 (0%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N F+ +DYETFG D A DRPAQFAG+R D + V +C+ + DYLP PEA ITG Sbjct: 42 NTFLFHDYETFGIDPARDRPAQFAGIRTDADFNICGEPVVIYCQMSPDYLPAPEACLITG 101 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A ++G+ EA+F R IHQ FS P TC++GYNNIRFDD ++R FYRNF D Y +SW Sbjct: 102 ITPQIANQNGICEADFFRTIHQQFSQPATCVLGYNNIRFDDEFTRYGFYRNFLDPYAYSW 161 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNSRWDLLDV RA YA P+GI W +G SF+L+ L++ANGI+H NAHDA +DVY Sbjct: 162 QQGNSRWDLLDVARAFYALRPEGINWVYDAEGKPSFRLEKLSVANGIQHENAHDAMSDVY 221 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ L +++ +P+LFEYL +R KN+L+ LIDI N+ PLVHVSGMF A + + IAP Sbjct: 222 ATIGLAKSLKQAQPRLFEYLSTHRGKNKLKNLIDIINIKPLVHVSGMFSAVQGCVSWIAP 281 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +AWHP ++VI +L D+ +L+ +L +RL+T D++ PVP+K +H+NKCP+ Sbjct: 282 MAWHPTNNNAVIVIDLHKDLSPLLELNITELRERLYTRKDDITDGSPVPVKLIHINKCPV 341 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLY 361 L P +E + GI+ C++NL +LRQ +R++ +++ Y ++QD + LY Sbjct: 342 LAPASSLSEERAQELGINRDLCMQNLAVLRQNPQIREKLAGLFSDEYIPPANQDPEHMLY 401 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF++ DR +D I + + EQL+ F D RLP L FRYRARN+PHTLS +E+Q W Sbjct: 402 QGFFSEADRAAIDLIQQASAEQLAAGQYQFHDPRLPTLLFRYRARNYPHTLSPREQQQWQ 461 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + L R E Y +L++L + +I AL YLQ Sbjct: 462 QFCVDALNS-RAEPYLLRLEALLEGKVPGTREWNIIKALALYLQ 504 >gi|91793639|ref|YP_563290.1| exonuclease I [Shewanella denitrificans OS217] gi|91715641|gb|ABE55567.1| Exodeoxyribonuclease I subunit C [Shewanella denitrificans OS217] Length = 470 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 203/469 (43%), Positives = 282/469 (60%), Gaps = 5/469 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ I Sbjct: 5 LQPTLFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKLATDYLPSPEAILI 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A G+ E EF RI+ FS NTC++GYN++RFDD SR FYRNF D Y Sbjct: 65 TGITPQLANMKGIPETEFMGRINALFSQENTCVVGYNSLRFDDEVSRYGFYRNFIDPYAR 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++RA YAF PDGI WP ++DG SFKL+ L ANG+ H AHDA +D Sbjct: 125 EWQNGNSRWDIIDLVRACYAFRPDGINWPRKEDGTVSFKLELLTQANGLSHEKAHDAMSD 184 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+A+ LI++ +PKL++Y + R K + ID+ M PLVHVS A + T LI Sbjct: 185 VYATIAMAKLIKQVQPKLYDYYFSLRRKQAVAAQIDVLKMQPLVHVSSKISALNACTTLI 244 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 AP+A+HP K++V+ NL+ D+ +L + ++A R++TS +L +P+P+K++HLNK Sbjct: 245 APMAYHPTNKNAVLCVNLAMDISPLLELSAEEIAARMYTSRADLAPDELPIPLKQIHLNK 304 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 CP + + R D E L+Q LR++ ++ + + D D Sbjct: 305 CPFIASPKLLDDDLTSRLNFDKAFAREQYKRLKQHPELREKLVGVFEQTKEFNHSDPDLM 364 Query: 360 LY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LY GFF+ D+ MD I +T P+ L+ L+L F D R+ E+ FRYR RN+P L E Sbjct: 365 LYGGGFFSHADKAKMDIIRQTQPQNLAALDLKFDDNRIAEMLFRYRGRNYPELLDHDESV 424 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L + +Y KL++L DE K+ L+ AL +YLQ + Sbjct: 425 RWREFCQSRLADA---DYVIKLENLLEASAQDEHKQKLLRALCQYLQAL 470 >gi|114562814|ref|YP_750327.1| exonuclease I [Shewanella frigidimarina NCIMB 400] gi|114334107|gb|ABI71489.1| Exodeoxyribonuclease I subunit C [Shewanella frigidimarina NCIMB 400] Length = 473 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 205/469 (43%), Positives = 287/469 (61%), Gaps = 6/469 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +DYETFG + + DRP+QFAG+R D + I E F+CK A DYLP PEA+ IT Sbjct: 8 TPSLYWHDYETFGANPSKDRPSQFAGIRTDLELNIIGEPETFYCKLAPDYLPSPEAILIT 67 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A GV EAEF +RI+ FS PNTC++GYN++RFDD SR FYRNF D Y Sbjct: 68 GITPQLANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFIDPYGRE 127 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 128 WQNGNSRWDIIDLVRACYAFRPDGINWPKKEDGSPSFKLELLTQANGLSHEKAHDAMSDV 187 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LI++ PKL+EY ++ R K + ID+ M PLVHVS A + T LIA Sbjct: 188 YATIAMAKLIKQTHPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQGCTTLIA 247 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA+HP K++VI NL+ D+ +L + ++ R++TS L + + +P+K++HLNKC Sbjct: 248 PVAYHPTNKNAVICINLAMDISPLLELSAQEINDRMYTSRQNLAENELAIPLKQIHLNKC 307 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD--S 358 P + E E+ D E L+ LR++ ++ + Sbjct: 308 PFIGSPKLLDDEVAEKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKAITDPDLM 367 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 GFF+ D+ +D I TAP L+ L L F D R+ E+ FR+RARN+P TLS+ E + Sbjct: 368 LYSGGFFSHADKTKIDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPETLSDSEAR 427 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + ++ L+ + +Y KL++L E +E K+ L+ ALY+YLQ + Sbjct: 428 KWRDFCQQRLSDA---DYVIKLENLVEETSENEHKQKLLKALYQYLQSL 473 >gi|68346412|gb|AAY94018.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf-5] Length = 497 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 182/472 (38%), Positives = 278/472 (58%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G + DRP Q AG+R D +I+ +C+P+DD LP P A ITGI Sbjct: 25 SLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGI 84 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP + G+ EA+F R+H+ + P TC +GYN +RFDD +R YRNF+D Y W Sbjct: 85 TPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREWQ 144 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+DV+R YA P GI WP S KL+ L ANGI+H AHDA +DV A Sbjct: 145 GGNSRWDLIDVVRTAYALRPQGIVWPEEQGQ-VSLKLERLTAANGIDHGQAHDALSDVRA 203 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL L+R+K+P+L+++L+ R+K ++ + + + P+VH+SG F A+R ++ P+ Sbjct: 204 TIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVVLPL 261 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKCPI 302 AWHPR ++++I C+L D + +LD+ L +RL+T ++ L+G +PVP+K +H+N+CP+ Sbjct: 262 AWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPV 321 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R +D + L + Q RD+ IY ++S D + QLY Sbjct: 322 VAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLY 381 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ P L+ PF D RLPEL FRYRARNFP TL++ E++ WL Sbjct: 382 DGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERWL 441 Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ L +E ++ L+ D + +++ +Y+Q + Sbjct: 442 VFCQQRLLDPQLGAPNTLESFRQGLEQ--SLLSADPMQRQVLDQWQDYVQAL 491 >gi|120555513|ref|YP_959864.1| exonuclease I [Marinobacter aquaeolei VT8] gi|120325362|gb|ABM19677.1| Exodeoxyribonuclease I subunit C [Marinobacter aquaeolei VT8] Length = 482 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 200/480 (41%), Positives = 282/480 (58%), Gaps = 11/480 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQKAL DG EAEF +I+ FS P TC +GYN++RFDD +R+ YRN D Y Sbjct: 61 TGITPQKALEDGFPEAEFIAQINAAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++R YA P+GI WP ++DG+ SF+L++L +ANGI H AHDA +D Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+A+ LI+EK+PKLF+++ + ++K+ R+++D +M P+ H+S + A+R AL+ Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTASMKPVFHISAKYPAARGCCALV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 AP+A K+ VI +L D + ++ +R+FTS EL +G+ P+K V LNK Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355 CP+L P ER NL LR+ +L R + + + S D Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARVAQAFEQDFQGSDLTD 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D QLY G F + L T P + L+ + F D RLPE+ FRYRARN+P TL Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVDTLAEQEMSFEDPRLPEMLFRYRARNYPDTLIG 420 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +E + W + R + L + +E Y +LQ L+ + + K+ ++ L+ Y + +IP Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGQELQRLAADTELTPRKQQILEDLHLYGESLIP 480 >gi|114047972|ref|YP_738522.1| exonuclease I [Shewanella sp. MR-7] gi|113889414|gb|ABI43465.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-7] Length = 470 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 209/468 (44%), Positives = 288/468 (61%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG A DRPAQFAG+R D I E F+CK + DYLP PEA+ IT Sbjct: 6 QPSIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y Sbjct: 66 GITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIA Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA HP K+++I NL+ D+ +LD Q+ R++T EL + +P+P+K+VHLNKC Sbjct: 246 PVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + ER ID E L+ LR++ ++ ++ D D L Sbjct: 306 PFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L+ ++Y KL++L + + DE K+ L+ AL YL+ + Sbjct: 426 WRIFCQQRLSD---QDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470 >gi|299065319|emb|CBJ36488.1| exodeoxyribonuclease I [Ralstonia solanacearum CMR15] Length = 477 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 190/479 (39%), Positives = 288/479 (60%), Gaps = 11/479 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I Sbjct: 1 MTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ L+ G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y Sbjct: 61 TGITPQQCLKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W N RWDLLDV+R +A PDG++WP DDG SFKL+ L+ ANG++H AHDA +D Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNDDGKPSFKLEHLSQANGLQHEAAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL +R +P+LF++ + R K ++ I PL+H+SGM+G R A++ Sbjct: 181 VRATIALARRVRTAQPRLFDFCFALRKKERVLAEIG-DAPRPLIHISGMYGVDRGCMAVV 239 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ WHP K+ +I +LS D +D + +RLFT +L +G +PIK +H+NK Sbjct: 240 WPLGWHPTNKNELIAWDLSFDPSELFHMDVAAIRERLFTRSADLTEGTTRLPIKSIHINK 299 Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 PI++ + + ERWG+D + + + +LR+ ++ +Y + VD Sbjct: 300 SPIVIGNLKTLQPAQAERWGVDFAAIERHAGIAQGAPDLRETWRQVYARELEPIED-VDQ 358 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL RYRARNFP TL+E E + Sbjct: 359 NLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLLRYRARNFPDTLTEDEHE 418 Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIPK 470 W + R + L ++ Y +++ L+ E KGD EG+++ALY+Y + V P+ Sbjct: 419 QWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALYDYAEMVAPE 477 >gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1] gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1] Length = 480 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 195/476 (40%), Positives = 278/476 (58%), Gaps = 9/476 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ F+ YD ETFG D R AQFA VR DR+ + ++ F +PADD LP P A I Sbjct: 1 MTDSFLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLPSPVATLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI PQ ALR+G+ EAE + RI + S P TC +GYN++RFDD Y R+ +RNF+D Y Sbjct: 61 TGIAPQHALREGLSEAEATARIVEEMSRPGTCTLGYNSLRFDDEYVRHTLFRNFFDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDVMR +A P+GI+WP R+DGATSFKL+ LALAN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVMRLAHALRPEGIEWPKREDGATSFKLEHLALANNVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ L L+R+ +P+L++Y R K L+D M P++HVS + A+R A + Sbjct: 181 VYATIGLARLLRQAQPRLWDYALRMREKRHAASLLDTFAMNPVLHVSQRYPAARMCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+A HP + VI +L GD+ + ++A RL+T +L G+ VP+KEVHLN+ Sbjct: 241 LPLAVHPDISNRVIVFDLDGDVDALLEQAPEEIADRLYTPVADLPPGVSRVPLKEVHLNR 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF--KAIYNKPYTSSSQDVD 357 P+L+P + + F+R GID + L + LR + +DVD Sbjct: 301 SPMLVPWGHLRAPDFQRLGIDPELALARVERLRAHGPELAEKARQVYARGARERGEEDVD 360 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 LY GF D DR++ ++ TAP L + F D RLPEL FRYRARN+P TL+ E+ Sbjct: 361 GALYSGFCGDGDRRLCVQVRATAPADLGSRAFEFRDPRLPELLFRYRARNWPETLTPDER 420 Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++R++ L E + ++ +L + GD + L++ L + + + Sbjct: 421 GRWDDYRRRRLLADSGLSEYTFETFFAEIATLRATHAGDGQRLVLLDQLEAWGREL 476 >gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016] gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016] Length = 478 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y Sbjct: 61 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++ Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+ Sbjct: 238 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D + Sbjct: 298 CPVVAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 417 Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + L+ + + ++ L++ E G ++ A +Y + Sbjct: 418 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 470 >gi|303252408|ref|ZP_07338574.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247643|ref|ZP_07529685.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648867|gb|EFL79057.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855855|gb|EFM88016.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 514 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 217/473 (45%), Positives = 302/473 (63%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P +L+ L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + ++ ++ + SL + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|307245526|ref|ZP_07527613.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254482|ref|ZP_07536318.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258940|ref|ZP_07540671.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853585|gb|EFM85803.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862532|gb|EFM94490.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866964|gb|EFM98821.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 514 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 217/473 (45%), Positives = 303/473 (64%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVGPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + ++ ++ + SL + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille] gi|151280694|gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille] Length = 476 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 191/477 (40%), Positives = 275/477 (57%), Gaps = 10/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F+ +DYETFG DRPAQFA +R D + +I + +CKPA+D+LPDP++ IT Sbjct: 3 THTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCLIT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L GV E EF+ I + S T +GYN IRFDD +R +F+RN D Y Sbjct: 63 GITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWD+LDV+R YA P+GI WP DG SF+L+ L NGI H AHDA +DV Sbjct: 123 WQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALSDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIRE++PKLF++ K+++ I + P +H++GM A R A++ Sbjct: 183 RATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAVVW 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A HP K+ VI +LS D LD+ + R+F+ D L +G+ +PIK +HLNK Sbjct: 243 PLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLNKS 302 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + E E+WGID L + + ++ ++ ++ +P +++ VD Sbjct: 303 PIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAAD-VDED 361 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF + DR+ + + +PE L+ FSD RL E+ +RYRARNFPHTL+E+E+Q Sbjct: 362 LYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQR 421 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 W +HR L IE ++ LS DE E ++ ALY+Y + + P Sbjct: 422 WEDHRVARLFDGEGGARTIETLFAEIDQLSE--TADERGEEILGALYDYAEAIAPSR 476 >gi|113970745|ref|YP_734538.1| exonuclease I [Shewanella sp. MR-4] gi|113885429|gb|ABI39481.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-4] Length = 470 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 208/468 (44%), Positives = 287/468 (61%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG A DRPAQFAG+R D I E F+CK + DYLP PEA+ IT Sbjct: 6 QPSIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y Sbjct: 66 GITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIA Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PV HP K+++I NL+ D+ +LD Q+ R++T EL + +P+P+K+VHLNKC Sbjct: 246 PVTHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + ER ID E L+ LR++ ++ ++ D D L Sbjct: 306 PFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L+ ++Y KL++L + + DE K+ L+ AL YL+ + Sbjct: 426 WRIFCQQRLSD---QDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470 >gi|319425973|gb|ADV54047.1| Exodeoxyribonuclease I [Shewanella putrefaciens 200] Length = 470 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 211/468 (45%), Positives = 280/468 (59%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ IT Sbjct: 6 QPSIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y Sbjct: 66 GITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++RA YAF PDGI W +DDG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPDGINWSLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+ Sbjct: 186 YATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLIS 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA HP K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKC Sbjct: 246 PVAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + R ID E LR LR++ ++ S++ D D L Sbjct: 306 PFITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E Sbjct: 366 YSGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L ++Y KL++L DE K+ L+ AL YL+ + Sbjct: 426 WREFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 470 >gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas fluorescens Pf-5] Length = 475 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 182/474 (38%), Positives = 278/474 (58%), Gaps = 13/474 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 YDYET G + DRP Q AG+R D +I+ +C+P+DD LP P A IT Sbjct: 1 MTSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP + G+ EA+F R+H+ + P TC +GYN +RFDD +R YRNF+D Y Sbjct: 61 GITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDL+DV+R YA P GI WP S KL+ L ANGI+H AHDA +DV Sbjct: 121 WQGGNSRWDLIDVVRTAYALRPQGIVWPEEQGQ-VSLKLERLTAANGIDHGQAHDALSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL L+R+K+P+L+++L+ R+K ++ + + + P+VH+SG F A+R ++ Sbjct: 180 RATIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVVL 237 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKC 300 P+AWHPR ++++I C+L D + +LD+ L +RL+T ++ L+G +PVP+K +H+N+C Sbjct: 238 PLAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRC 297 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P++ P+ + E +R +D + L + Q RD+ IY ++S D + Q Sbjct: 298 PVVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQ 357 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF D DR++ +++ P L+ PF D RLPEL FRYRARNFP TL++ E++ Sbjct: 358 LYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQER 417 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 WL ++ L +E ++ L+ D + +++ +Y+Q + Sbjct: 418 WLVFCQQRLLDPQLGAPNTLESFRQGLEQ--SLLSADPMQRQVLDQWQDYVQAL 469 >gi|120599334|ref|YP_963908.1| exonuclease I [Shewanella sp. W3-18-1] gi|120559427|gb|ABM25354.1| Exodeoxyribonuclease I subunit C [Shewanella sp. W3-18-1] Length = 472 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 212/467 (45%), Positives = 281/467 (60%), Gaps = 5/467 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ ITG Sbjct: 9 ESIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITG 68 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W Sbjct: 69 ITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 128 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD++D++RA YAF PDGI WP +DDG+ SFKL+ L ANG+ H AHDA +DVY Sbjct: 129 QNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 188 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A+ LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+P Sbjct: 189 ATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISP 248 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VA HP K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKCP Sbjct: 249 VAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + R ID E LR LR++ ++ S++ D D LY Sbjct: 309 FITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLY 368 Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 GFF+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E W Sbjct: 369 SGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRW 428 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 E + L ++Y KL++L DE K+ L+ AL YL+ + Sbjct: 429 REFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 472 >gi|165976088|ref|YP_001651681.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307256692|ref|ZP_07538471.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165876189|gb|ABY69237.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306864740|gb|EFM96644.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 514 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 216/473 (45%), Positives = 301/473 (63%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + + ++ + L + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQIDAKSV-QFAEAIDILFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7] gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7] Length = 478 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 197/475 (41%), Positives = 287/475 (60%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y Sbjct: 61 TGITPQRLAERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWP-EADGRVSLKLELLTAANGLEHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIR+++P+L++YLY R+K+++ I + + PLVHVSG F A R +++ Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKHRVLDQIHL--LQPLVHVSGRFSAERHFLSVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L D +L + +L +RL+T DEL +G +PVP+K++ +N+ Sbjct: 238 LPLAWHPRNRNALIVCDLRADPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E R GID + C LLRQ+ ++ Y++ ++S+D + Sbjct: 298 CPVVAPLSVLRAEDRLRTGIDVEACQRRAELLRQRQAAWTEKLALAYSEESFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ R PEQL+ PF D RL ELFFRYRARNFP TLS E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQLRRAEPEQLAREQWPFDDIRLQELFFRYRARNFPETLSPSERQ 417 Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + L+ + + ++ +++ E G ++ A +Y + Sbjct: 418 QWEAFCRNRLSHEEFGAPNTLPAFEAAMEACRQEQGGTLP--AVLAAWRDYAGEL 470 >gi|307249878|ref|ZP_07531852.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858067|gb|EFM90149.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 514 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 216/473 (45%), Positives = 302/473 (63%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P++L+ L F+ R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFAGERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + + ++ + SL + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQIDAKSV-QFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1] Length = 480 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGI Sbjct: 6 SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W Sbjct: 66 TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV A Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++ P+ Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP+ Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D + QLY Sbjct: 303 VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVDERQQWE 422 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L+ + + ++ L++ E G ++ A +Y + Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472 >gi|315126831|ref|YP_004068834.1| exonuclease I [Pseudoalteromonas sp. SM9913] gi|315015345|gb|ADT68683.1| exonuclease I [Pseudoalteromonas sp. SM9913] Length = 481 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 215/472 (45%), Positives = 301/472 (63%), Gaps = 8/472 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYET+G D+P+QFAGVR D I + +CKP DYLP PEA ITGI Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y + Sbjct: 70 TPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH S A++ T +AP+ Sbjct: 190 TIALAKLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVAPM 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 ++HP K++VI +L+ + +V DL+ QL KRL+T +L +G +PV +K VHLNKCPI Sbjct: 250 SFHPVNKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKCPI 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361 L P E+ R GID ++CL NL +L+ T LRD+ ++N+ S++ +VD LY Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDYLLY 369 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF + D+ I PE L++L L F D + L FRYRARN+P TL+++E W Sbjct: 370 DGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTLNQQELDQWR 429 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ + L +++ L++L+ E+ E ++ ALY Y Q + Sbjct: 430 QYCQSKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481 >gi|71280482|ref|YP_268744.1| exonuclease I [Colwellia psychrerythraea 34H] gi|71146222|gb|AAZ26695.1| exodeoxyribonuclease I [Colwellia psychrerythraea 34H] Length = 487 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 201/475 (42%), Positives = 297/475 (62%), Gaps = 11/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET+G + D+P+QFAG+R D I E+F+C P DYLP PEA +T Sbjct: 12 QPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKA R+G+ EAEF+ RIH F+ PNTC+ GYN+IRFDD +R + YRNFYD Y Sbjct: 72 GITPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYARE 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWP---SRDDGATSFKLQDLALANGIEHVNAHDAK 178 W NGNSRWD++D++RA YA P+GI WP + SF+L+ L AN I H AHDA Sbjct: 132 WQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAM 191 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 +DVYAT+A+ LI+EK+PKL++++++ +NKNQ++ LI+ MTP+VH S ++ T+ Sbjct: 192 SDVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTS 251 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 APV++HP K++VI +L+ D+ L S ++ RL+T +D+L +P+P+K +H+ Sbjct: 252 WFAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHV 311 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 NKCP++ P E+ ER I CL+NL LLR+ LRD+ ++ + Sbjct: 312 NKCPVIAPAKTLLPENAERLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDVDA 371 Query: 358 SQ--LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 Q FF+ D+ MD + +PEQL+ F D RL L FRYRARN+P+TLS + Sbjct: 372 EQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLSTE 431 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 E+Q W ++ + L ++E+ K+++L+ E++ D+ K ++ ALYE+LQ Sbjct: 432 EQQKWQQYCQNKLQYGGKGILSLDEFMMKIENLAHEHETDKAKMSVLKALYEFLQ 486 >gi|170726402|ref|YP_001760428.1| exonuclease I [Shewanella woodyi ATCC 51908] gi|169811749|gb|ACA86333.1| Exodeoxyribonuclease I [Shewanella woodyi ATCC 51908] Length = 470 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 210/468 (44%), Positives = 288/468 (61%), Gaps = 5/468 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ +DYETFG + A DRP+QFAG+R D I E F+CK A+DYLP PEA+ IT Sbjct: 6 TSTIFWHDYETFGANPAKDRPSQFAGIRTDFDLNIIGEPETFYCKVANDYLPSPEAILIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A GV EAEF ++H FS PNTC+ GYN+IRFDD SR FYRNFYD Y Sbjct: 66 GITPQLANLKGVPEAEFMGKVHALFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWD++D++RA YAF P+GI+WP ++DG+ SFKL+ L ANG+ H AHDA +DV Sbjct: 126 WQQGNSRWDIIDLVRACYAFRPEGIEWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + LI+EK+PKLF+Y ++ R K ++ KLID+ NM PL+HVS + ++IA Sbjct: 186 YATIDMAKLIKEKQPKLFDYFFNLRKKQEVSKLIDVLNMQPLIHVSSKISSLHGCASIIA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA H K+++I NL+ D+ +LD Q+ +R++T +L +P+ +K+VH+NKC Sbjct: 246 PVAHHSSNKNAIICVNLAMDISPLIELDVEQIRERMYTRRADLAPDELPISVKQVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + E+ R ID E L+Q LR++ ++++ Y S S D D QL Sbjct: 306 PFIASTKILTDENAARLDIDKAFAREQYKRLKQHPELREKLVSVFDVEYESDSNDPDLQL 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+ M+ I T P+ L+ L L F D RL E+ FRYR RN+P + E Sbjct: 366 YSGGFFSSADKAKMEMIRHTLPQNLAALELHFDDSRLKEMLFRYRGRNYPEFFDDSESMK 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W E + L +Y KL++L E E K+ L+ AL YL + Sbjct: 426 WREFCQSRLND---PDYMFKLENLVNETSQSEDKQKLLTALCHYLSNL 470 >gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14] gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14] Length = 480 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGI Sbjct: 6 SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W Sbjct: 66 TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV A Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++ P+ Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP+ Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D + QLY Sbjct: 303 VAPLSVLRGEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L+ + + ++ L++ E G ++ A +Y + Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472 >gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2] Length = 480 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGI Sbjct: 6 SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W Sbjct: 66 TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV A Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++ P+ Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP+ Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R GI+ C + LLRQ D+ A+Y + S+S D + QLY Sbjct: 303 VAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNAAERQQWE 422 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L+ + + ++ L++ E G ++ A +Y + Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472 >gi|332535945|ref|ZP_08411647.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505] gi|332034679|gb|EGI71232.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505] Length = 481 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 210/472 (44%), Positives = 303/472 (64%), Gaps = 8/472 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYET+G D+P+QFAG+R D I + +CKP DYLP PEA ITGI Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y + Sbjct: 70 TPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH + A++ T+ +AP+ Sbjct: 190 TIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVAPM 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 ++HP K++VI +L+ + +V DL+ +L KRL+T +L + +PV +K VHLNKCPI Sbjct: 250 SFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEDDLPVGLKLVHLNKCPI 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361 L P E+ R GID ++CL NL +L+ T+LRD+ ++N+ S++ +VD LY Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDYLLY 369 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF + D+ I P++L+ L L F D++ L FRYRARN+P TL+++E W Sbjct: 370 DGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQELDQWR 429 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ + L +++ L++L+ E+ E ++ ALY Y Q + Sbjct: 430 QYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481 >gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719] gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719] Length = 480 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGI Sbjct: 6 SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W Sbjct: 66 TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV A Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++ P+ Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP+ Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D + QLY Sbjct: 303 VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L+ + + ++ L++ E G ++ A +Y + Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472 >gi|83746387|ref|ZP_00943439.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551] gi|207744660|ref|YP_002261052.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609] gi|83726928|gb|EAP74054.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551] gi|206596067|emb|CAQ62994.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609] Length = 489 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 187/477 (39%), Positives = 280/477 (58%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + IT Sbjct: 14 THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLIT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y Sbjct: 74 GITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +DV Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSDV 193 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++ Sbjct: 194 RATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVW 252 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKA 312 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWG+D + + ++R+ ++ +Y + VD Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYVRELDPIED-VDQN 371 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF A+ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E E + Sbjct: 372 LYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEDEYEQ 431 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469 W + R + L E + +LQ L E GD + ++ LY+Y Q ++P Sbjct: 432 WEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLYDYAQQIVP 488 >gi|308049114|ref|YP_003912680.1| exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799] gi|307631304|gb|ADN75606.1| Exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799] Length = 470 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 210/469 (44%), Positives = 288/469 (61%), Gaps = 7/469 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +DYET+G DVA DRPAQFAG+R D IE ++C+ DYLP PEA+ +TG Sbjct: 5 ETLLWHDYETWGADVARDRPAQFAGIRTDLDLNIIEEPVEYYCRLPADYLPKPEAMLVTG 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQKA R G VEA+F R+H+ + PNTC +GYN+IRFDD +R YRNF+D Y W Sbjct: 65 ITPQKANRLGEVEAQFIARVHEQMARPNTCTVGYNSIRFDDEITRYALYRNFFDPYAREW 124 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD++D++RA YA P+GI WP R+DGA SFKL+ L ANGI H +AHDA +DV Sbjct: 125 QNGNSRWDIIDLVRACYALRPEGIVWPEREDGAPSFKLEHLTAANGIGHDSAHDAVSDVK 184 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+AL LI+ +PKL+E+ + RNK IDI + PL+HVS F AS+ +L+ P Sbjct: 185 ATIALAKLIKTTQPKLYEWAFRLRNKRFAASQIDILALKPLLHVSSRFPASQGCASLVLP 244 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 +AWHP K++V +L+ D + D L +L+ + +G VP+K VH+NK P Sbjct: 245 MAWHPENKNAVACVDLAMDPTPLLEWDIETLKAKLYQKAVDRTEGEPRVPVKLVHMNKSP 304 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY---NKPYTSSSQDVDS 358 + P + + ER G+D C E+ LLRQ + P + D Sbjct: 305 FIAPASSLEDANAERLGLDKAACREHYKLLRQHHAEVREKLHGLFSDDAPPQREPDNPDV 364 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLY GFF++ DR M+ + TAPE L+ L F D RLP+LFFRYRARN+P+TLSE E++ Sbjct: 365 QLYGGFFSEADRAQMELVRSTAPEHLAALEPQFVDPRLPKLFFRYRARNYPNTLSEAEQR 424 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W++H ++ L + +Y + L+ L ++ DE K L+ AL YLQ + Sbjct: 425 RWVQHCQQSLADA---DYVHNLEQLFEQHSSDEEKMKLLTALGHYLQSL 470 >gi|302608296|emb|CBW44754.1| Exodeoxyribonuclease I, Exonuclease I, DNA deoxyribophosphodiesterase, dRPase [Marinobacter hydrocarbonoclasticus] Length = 482 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 201/480 (41%), Positives = 282/480 (58%), Gaps = 11/480 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQKAL DG EAEF +I++ FS P TC +GYN++RFDD +R+ YRN D Y Sbjct: 61 TGITPQKALEDGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++R YA P+GI WP ++DG+ SF+L++L +ANGI H AHDA +D Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIHWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+A+ LI+EK+PKLF+++ + ++K+ R+++D M P+ H+S + A+R AL+ Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTAAMKPVFHISAKYPATRGCCALV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 AP+A K+ VI +L D + ++ +R+FTS EL +G+ P+K V LNK Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355 CP+L P ER NL LR+ +L R + + + S D Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARIAQAFEQDFQGSDLTD 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D QLY G F + L T P E L+ + F D RLPE+ FRYRARN+P TL Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVETLAEQEVRFEDARLPEMLFRYRARNYPDTLIG 420 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +E + W + R + L + +E Y +LQ L+ + + K+ ++ L+ Y + +IP Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGRELQRLASDPELTPKKQQVLEDLHLYGESLIP 480 >gi|89900857|ref|YP_523328.1| exonuclease I [Rhodoferax ferrireducens T118] gi|89345594|gb|ABD69797.1| Exodeoxyribonuclease I subunit C [Rhodoferax ferrireducens T118] Length = 485 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 276/480 (57%), Gaps = 14/480 (2%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + F+ +DYETFG + DRPAQFA +R D + I + + +C+PA D+LPDP+A ITG Sbjct: 8 HTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLITG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ L G+ E +F+ +I Q FS+P T +GYN IRFDD +R +F+RN D Y W Sbjct: 68 ITPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N RWDLLDV+R YA PDG++WP +G SFKL DL+ ANG+ H AHDA +DV Sbjct: 128 QNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAHDALSDVR 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGASRSNTA 238 AT+AL LI+ +PKLF++ + K+++ + P +H+SGMF R A Sbjct: 188 ATIALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFAPERGCLA 247 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 L+ P+A HP K+ ++ +L+ D R +++ Q+ RLFT +L +G+ +P+K +HL Sbjct: 248 LMWPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRLPVKSIHL 307 Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 NK P ++ +RWG++ L N + ++ + A++ K +++ DV Sbjct: 308 NKSPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVF-KRPAAATPDV 366 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D LY GF + DR+ ++ + + ++L++ F D RL EL +RYRARNFP +LS E Sbjct: 367 DEDLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNFPQSLSADE 426 Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 W HR L IE+ +L SL+ DE E ++ ALY+Y + + P+ Sbjct: 427 LARWEAHRSARLFDGEGGALTIEQLFEELDSLAE--SADERGEAILGALYDYAELIAPQR 484 >gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1] gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1] Length = 480 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGI Sbjct: 6 SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W Sbjct: 66 TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV A Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++ P+ Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP+ Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R GI+ C + LLRQ D+ A+Y + S+S D + QLY Sbjct: 303 VAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L+ + + ++ L++ E G ++ A +Y + Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472 >gi|157375752|ref|YP_001474352.1| exonuclease I [Shewanella sediminis HAW-EB3] gi|157318126|gb|ABV37224.1| Exodeoxyribonuclease I [Shewanella sediminis HAW-EB3] Length = 470 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 211/467 (45%), Positives = 289/467 (61%), Gaps = 5/467 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +DYETFG + A DRP+QFAG+R D I F+CK A+DYLP PEA+ ITG Sbjct: 7 PSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIIGDPVTFYCKVANDYLPSPEAILITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A G+ EAEF ++H FS PNTC+ GYN+IRFDD SR FYRNFYD Y W Sbjct: 67 ITPQLANLKGIPEAEFMAKVHDLFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYAREW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNSRWD++D++RA YAF PDGI+WP ++DG+ SFKL+ L AN + H AHDA +DVY Sbjct: 127 QQGNSRWDIIDLVRACYAFRPDGIEWPVKEDGSPSFKLEHLTQANDLSHEKAHDAMSDVY 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LI++K+PKLF+Y + R K ++ KLID+ NM PLVHVS + T +IAP Sbjct: 187 ATIDMAKLIKQKQPKLFDYYFTLRRKQEVSKLIDVLNMQPLVHVSSKISSLHGCTTIIAP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VA H K+++I NL+ D+ +L Q+ +R++T +L + +P+ +K++H+NKCP Sbjct: 247 VAHHSTNKNAIICVNLAMDISPLIELSVDQIRERMYTRRADLAEDELPISVKQIHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + E+ ER ID E LL+Q LR++ A+++ Y S S D D QLY Sbjct: 307 FIASAKTLSDENAERLNIDKAFAREQFKLLKQHPELREKLVAVFDVEYESGSTDPDLQLY 366 Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 GFF+ D++ M+ I T+P+ L+ L L F D RL E+ FRYR RN+P T E E W Sbjct: 367 SGGFFSSADKEKMEIIRHTSPQNLAALELEFDDSRLKEMLFRYRGRNYPETFDEMESMRW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 E + L +Y KL++L E +E K+ L+ AL YL + Sbjct: 427 REFCQARLND---PDYMLKLENLMNETAQNEDKQKLLTALCHYLSNL 470 >gi|167855672|ref|ZP_02478429.1| exodeoxyribonuclease I [Haemophilus parasuis 29755] gi|167853190|gb|EDS24447.1| exodeoxyribonuclease I [Haemophilus parasuis 29755] Length = 516 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 218/472 (46%), Positives = 299/472 (63%), Gaps = 5/472 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG D A DRPAQFAG+R D + I +F+C+ +DYLP PEAV +TGI Sbjct: 5 TFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + G+ E EF+ RIH FS PNTC++GYNNIR+DD +R F+RNF+D Y +SW Sbjct: 65 TPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 124 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDV+RA YA P+GI+W D+G SFKL++L ANGI H NAHDA ADVYA Sbjct: 125 NGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAMADVYA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI++K+PKLF++ R K L ++ID+ MTPLVHVSGM G R NTA + P+ Sbjct: 185 TIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAWVVPL 244 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP +++VI C+LSG++ + S L +RL+T EL+ GL VP+K VH+NKCP Sbjct: 245 AWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCP 304 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQ 359 IL P E+ R GID + CLENL LL+ Q + + +S ++++ Sbjct: 305 ILAPAKTLLSENATRLGIDRQACLENLKLLKSQKSLVREKVIDILSEERNYPASNNIETT 364 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGFF D+ M + PE+L+ L FSD R+ L F YRAR++ TL+ E+ Sbjct: 365 LYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPRIEPLLFHYRARHYSETLTRAEQVR 424 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 W ++ + L ++ E ++ + LS +Y + K L+ L Y ++ + Sbjct: 425 WQKYCYQQL-ETKAEAFEQAVDLLSAQYHDNSEKIKLLTDLTAYAAQLMQPK 475 >gi|53803521|ref|YP_114798.1| exonuclease I [Methylococcus capsulatus str. Bath] gi|53757282|gb|AAU91573.1| exodeoxyribonuclease I [Methylococcus capsulatus str. Bath] Length = 478 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 182/473 (38%), Positives = 263/473 (55%), Gaps = 9/473 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F YD ETFG D A DR AQFAG+R D ++ I +V +C+P+DD +P P+A +TG Sbjct: 5 PSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTG 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A GV E+ F IH+ F P TC++GYN +RFDD R+ FYRN YD Y W Sbjct: 65 ITPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYAREW 124 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNSRWD++D+ R A PDGI+WP G+ FKL+ LA ANGI H +AHDA +DV Sbjct: 125 KGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDVR 184 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+A LI E++P+LF++ + R K + +L+ + P++HVS F ASR A + P Sbjct: 185 ATVAFARLIAERQPRLFQFALESRAKGAVERLLALGAWQPVLHVSEKFSASRHCIACVLP 244 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCP 301 + HPR VI +L+ D DL ++ +RLFT EL +P+K VH N+CP Sbjct: 245 LCRHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGVHTNRCP 304 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK---AIYNKPYTSSSQDVDS 358 +++P+ + ER GID C L+ + + ++S Sbjct: 305 VVVPMSALRPADGERLGIDAVLCRRRARWLQDHAEDIIPKISAAFEVDASFEAASDPELM 364 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 GF D DR+ +D++ R P+QL+ F D R EL FR+RARNFP TL+ +E++ Sbjct: 365 LYRGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNFPETLNAEERE 424 Query: 419 DWLEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W R+ L + E+ +++ L + + D GK +++AL Y + + Sbjct: 425 RWTAFRRARLAGIGGGLSLAEFFSRIDRLRSQ-ESDAGKRAILDALEVYGRNL 476 >gi|92115139|ref|YP_575067.1| exonuclease I [Chromohalobacter salexigens DSM 3043] gi|91798229|gb|ABE60368.1| Exodeoxyribonuclease I subunit C [Chromohalobacter salexigens DSM 3043] Length = 495 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 194/486 (39%), Positives = 284/486 (58%), Gaps = 18/486 (3%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +DYETFG D DRPAQFA +R D + + F+CKPADD+LP P+A ITG Sbjct: 8 PTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLITG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A R G+ E EF+ RIH SVP TC +GYN +RFDD SR++FYRNF D Y W Sbjct: 68 ITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFIDPYSREW 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWDL+DV+R +A PDGI+WP+R+DGA SF+L+DL ANGIEH AHDA ADV Sbjct: 128 QNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAHDALADVR 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ L L++ + +LFEYL R+K + +++DIQ P++HVS + ASR +AL+ P Sbjct: 188 ATIELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRGCSALVVP 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 +A HP + VI +LS D +++ Q+ +R+F S DEL +G +P+K +H+NK P Sbjct: 248 LAEHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKVIHINKSP 307 Query: 302 ILMPIDYCKKEHFE----------RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS 351 ++MP K R G+D C + L+ ++ + ++ + + Sbjct: 308 VIMPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEVFAEGPGA 367 Query: 352 SSQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410 D D LY GFF+ DR+ M R L+ + F D RL E+ FR RARN+P Sbjct: 368 PPSDPDLMLYSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFRLRARNYPD 427 Query: 411 TLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 TLS +E+ W +R + + + + +++ L + D+ + ++ L +++ Sbjct: 428 TLSSEEQAQWEAYRWARMNDAEVASLTLTGFAREIERL-NQVPLDDAQRQVLEELVMHVE 486 Query: 466 WVIPKE 471 ++P + Sbjct: 487 AMMPPQ 492 >gi|121604837|ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ2] gi|120593806|gb|ABM37245.1| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans CJ2] Length = 482 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 277/480 (57%), Gaps = 14/480 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ F+ +DYETFG + DRPAQFAG+R D + +I + +C+PA+DYLPDPE+ +T Sbjct: 3 SHTFLWHDYETFGLNTRRDRPAQFAGIRTDAELNEIGEPLMIYCQPANDYLPDPESCVLT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L+ GV E F+ RI Q + P T +GYN IRFDD +R++F+RN D Y Sbjct: 63 GITPQHCLQHGVPEHAFAARIEQVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYGRE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R YA PDGI WP ++DG SFKL+DLA ANG+ H AHDA +DV Sbjct: 123 WQNECGRWDLLDVVRMAYALRPDGIVWPLKEDGKPSFKLEDLARANGLLHETAHDALSDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237 AT+AL L+R +P+LF++ K ++ + + P +HVSGMF A R Sbjct: 183 RATIALARLVRTAQPRLFDFCLGLHKKARVSAELGLPATARMARPFLHVSGMFPAERGCL 242 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 A++ P+A HP K+ V+ +L+ D LD L RLF+ +L +G+ +PIK VH Sbjct: 243 AVMFPLATHPANKNEVLAWDLAHDPSELPLLDVATLRLRLFSKSADLPEGVQRLPIKSVH 302 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LNK P+++ + RWG+D ++ L + + ++ + ++ + + Sbjct: 303 LNKSPMVVRNLQTLTPAMAARWGVDTEQALRHAEIAAGLPDMSAVWPEVFRRAAEAEPD- 361 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF + DR+ ++++ + +L+ + F D RL EL FRYRARNFP TL+ + Sbjct: 362 VDENLYGGFIGNDDRRRLNQLREMSGAELAHSRMGFDDGRLKELVFRYRARNFPETLNPE 421 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 + + W HR L ++ + +L+ DE E ++ ALY+Y + ++P+ Sbjct: 422 DTERWEAHRAARLLDGEGGARNVDALFAGIDALAQ--TADERGEAILGALYDYAEAIVPE 479 >gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192] gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192] Length = 480 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 195/472 (41%), Positives = 283/472 (59%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGI Sbjct: 6 SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W Sbjct: 66 TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV A Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++ P+ Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 WHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP+ Sbjct: 243 VWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D + QLY Sbjct: 303 VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L+ + + ++ L++ E G ++ A +Y + Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472 >gi|257464641|ref|ZP_05629012.1| exonuclease I [Actinobacillus minor 202] gi|257450301|gb|EEV24344.1| exonuclease I [Actinobacillus minor 202] Length = 514 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 220/471 (46%), Positives = 306/471 (64%), Gaps = 4/471 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F YDYE+FG + A+DRPAQFAG+R D Q+ I +F+CK DYLP PEAV +TGI Sbjct: 6 TFFFYDYESFGVNPAIDRPAQFAGIRTDEQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 PQ+ +G+ E EF+ RIH FS PNTC+IGYNNIR+DD +R F+RNF+D Y +SW Sbjct: 66 LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDV+RA YA P+GI+W + ++G +FKL++L ANGI H NAHDA +DVYA Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIEWVTDEEGIPNFKLENLTKANGISHENAHDAMSDVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R NTA + P+ Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP +++VI C+LSGD++ + S L RL+T EL + PVP+K VH+NKCPI Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQL 360 L P E+ R GID ++CLENL L+ Q + + S +V++ L Sbjct: 306 LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ M + APE+L+ L F+D R+ +L F YRAR++P TL+ E+ W Sbjct: 366 YDGFFSQADKNNMSILRSLAPEELAHHGLQFADPRVEKLLFHYRARHYPETLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 ++ + L SR E++ +++L + DE K L+ L Y+ + + Sbjct: 426 QKYCHQQL-DSRAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQISQDQ 475 >gi|293389967|ref|ZP_06634301.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950501|gb|EFE00620.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 475 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 215/474 (45%), Positives = 306/474 (64%), Gaps = 7/474 (1%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEA Sbjct: 2 MAKNDFSFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEA 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGITPQ+ G+ E EF+ +I Q FS PNTC++G+NNIR+DD +R FYRNF D Sbjct: 62 VLVTGITPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDP 121 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y +SW NGNSRWDLLD++RA YA PDGI+WP D+G SF+L+ L ANGI H NAHDA Sbjct: 122 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHDA 181 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 +DVYAT+ + LI++K+PKLF+Y ++ R K ++ KLID MTPLVHVSGM G R NT Sbjct: 182 MSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNT 241 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEV 295 LIA +AWHP K++VI C+L+ ++ +L + L+T + L G +PVP+K + Sbjct: 242 TLIASLAWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLI 301 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQ 354 H+NKCPI+ P ++ ER GID + C +N L++ ++R + + + +S Sbjct: 302 HINKCPIVAPAKTLLPQNAERLGIDQELCAKNRQRLQEARDIRQKVMDIFHQEREFDASD 361 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 +V+++LY+GFF+D D+ M + PE+L+ NL F D R+PEL F YRAR+F TL+ Sbjct: 362 NVETKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNR 421 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ +K L + +++ +LQ L+ +Y +E L+ +YEY +I Sbjct: 422 AEQIKWQKYCRKKLDAEAL-QFEQRLQELAEQYSNNEENLMLLQKVYEYGAQII 474 >gi|241664639|ref|YP_002982999.1| exonuclease I [Ralstonia pickettii 12D] gi|240866666|gb|ACS64327.1| Exodeoxyribonuclease I [Ralstonia pickettii 12D] Length = 479 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 186/477 (38%), Positives = 281/477 (58%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + IT Sbjct: 4 TPSFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y Sbjct: 64 GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +DV Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR +P+LF++ R K+++ I PL+H+SGM+G R A++ Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVAAEIG-DAPRPLLHISGMYGVERGCMAVVW 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ HP K+ +I +L+ D D+D + +R+FT +L +G +PIK +H+NK Sbjct: 243 PLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRAADLAEGTTRLPIKSIHINKS 302 Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWGID + + + ++R+ ++ +Y + VD Sbjct: 303 PIVISNMKTLQPGQAERWGIDFATIERHAAIAQGAPDMRETWRQVYARELEPIED-VDQN 361 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E + Sbjct: 362 LYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYEL 421 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGK--EGLINALYEYLQWVIP 469 W + R + L E + +LQ L E + + + ++ LY+Y Q ++P Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478 >gi|149376775|ref|ZP_01894532.1| Exonuclease I [Marinobacter algicola DG893] gi|149358896|gb|EDM47363.1| Exonuclease I [Marinobacter algicola DG893] Length = 481 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 202/479 (42%), Positives = 284/479 (59%), Gaps = 10/479 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F +DYETFG D DRP+QFAGVR D IE + +C PADDY+P PEA I Sbjct: 1 MIRSFYWHDYETFGVDPIHDRPSQFAGVRTDADLNIIEDPLIIYCAPADDYVPSPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQKAL +G EAEF +I++ FS P TC +GYN++RFDD SR+ YRN D Y Sbjct: 61 TGITPQKALEEGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVSRHTLYRNLRDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++R YA P+GIQWP ++DG+ SF+L++L +ANGI H AHDA +D Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIQWPKKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+A+ LI+EK+PKLFE++ ++K+ R ++D +M P+ H+S + A+R A++ Sbjct: 181 VEATIAVAKLIKEKQPKLFEFVLQNKDKHSARAMLDTASMKPVFHISAKYPATRGCCAMV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 AP+A HP K+ VI +L D Q+ +R+FTS EL +G P+K V LNK Sbjct: 241 APLADHPTNKNLVIVYDLREDPSELIHATPEQIRERVFTSQAELGEGTSRFPLKGVQLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 CP+L P K ER R E+LT+LR+ +L R +++P+ D Sbjct: 301 CPVLAPATMLKSLSGERLAELELDGDRLREHLTMLRKAPDLPARIAEAFDQPHEGDLTDP 360 Query: 357 DSQLYDGFFADVDRQIM-DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 D QLY G F + + +L+ E L + F D RL E+ FRYRARN+P TL + Sbjct: 361 DEQLYAGGFIGKTDREKLNWLLQQPVETLGEQEVQFEDGRLQEMLFRYRARNYPSTLIGE 420 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E + W E R + L +E + +LQ L+ + + K ++ L+ Y + +IP Sbjct: 421 EMERWEEFRSQRLMSPKKGWRSLEAFGRELQRLAADPELTPEKRHVLEELHLYGESLIP 479 >gi|307261134|ref|ZP_07542811.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869164|gb|EFN00964.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 514 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 216/473 (45%), Positives = 302/473 (63%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T ITPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y Sbjct: 61 MVTDITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERRFEPSAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P +L+ L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + ++ ++ + SL + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472 >gi|319793918|ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS] gi|315596381|gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS] Length = 479 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 190/481 (39%), Positives = 283/481 (58%), Gaps = 14/481 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ +DYETFG DRP+QFA +R D + +I + +CKPA DYLP PEA I Sbjct: 1 MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ L G+ E +F+ +I + FS P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 TGITPQVCLERGIPEHDFAAQIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W N RWDLLDV+R YA P+GIQWP ++DG SFKL+DLA ANG+ H +AHDA +D Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPEGIQWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236 V AT+AL LIR+K+PKLF++ + K+++ + + P +HVSGMF R Sbjct: 181 VRATIALARLIRDKQPKLFDFAFGLHKKDRVASELGLPAMRETAKPFLHVSGMFSVERGC 240 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295 A++ P+A HP K+ ++ +L+ D +DLD L RLFT +L +G++ +P+K + Sbjct: 241 IAVMWPLASHPTNKNELLAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVLRLPVKGI 300 Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 HLNK P+++ + ERWGID + + + R ++ + +Y +P ++ Sbjct: 301 HLNKSPMVVGNLRTLAPPMAERWGIDLDTAMRHAAIARDLPDMSAIWSQVYARPKEATPD 360 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 VD LY GF + DR+ ++++ + +L+ F D RL E+ FRYRARN+P +L+ Sbjct: 361 -VDEDLYGGFVGNADRRRLNQLRGLSAGELAKDRTGFDDGRLEEIVFRYRARNWPESLAP 419 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +E + W R L IE+ +++ +LS DE E ++ ALYEY + + P Sbjct: 420 EETERWEALRVARLFHGEGGARTIEQLFSEVDALSE--TADERGEEILGALYEYAEAIAP 477 Query: 470 K 470 + Sbjct: 478 E 478 >gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans] gi|133737741|emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA deoxyribophosphodiesterase) (dRPase) [Herminiimonas arsenicoxydans] Length = 477 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 277/475 (58%), Gaps = 10/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F+ +DYETFG + DRPAQFA +R D + +I + + +C+PA+D+LPDP++ IT Sbjct: 3 THTFLWHDYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCLIT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L G+ E +F+ +I + T +GYN IRFDD +R +F+RN D Y Sbjct: 63 GITPQVCLERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWD+LDV+R YA P+GI WP DG +SF+L+ L ANGI H AHDA +DV Sbjct: 123 WQNACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGIAHEAAHDALSDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR+++P+LF++ + K+++ I + P +H++GMF A R ++ Sbjct: 183 RATIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITGMFPAERGCIGIVW 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A HP K+ VI +L+ D LD+ + R+F+ D L +G+ +PIK +HLNK Sbjct: 243 PLAVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGVSRLPIKSIHLNKS 302 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P+++ + E +WG+D L + + ++ ++ ++++P + VD Sbjct: 303 PVVINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFHRPQEGTPD-VDED 361 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF + DR+++ + +PE L+ FSD RL ELF+RYRARNFP TLS +E + Sbjct: 362 LYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRYRARNFPQTLSAEEAER 421 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W EHR L IE ++ LS DE E ++ ALY+Y + + P Sbjct: 422 WEEHRAARLFNGDGGARTIEGMFAEIDQLSE--TADERGEEILAALYDYAEAIAP 474 >gi|300702669|ref|YP_003744269.1| exodeoxyribonuclease i [Ralstonia solanacearum CFBP2957] gi|299070330|emb|CBJ41622.1| exodeoxyribonuclease I [Ralstonia solanacearum CFBP2957] Length = 489 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 186/477 (38%), Positives = 280/477 (58%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + IT Sbjct: 14 THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLIT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y Sbjct: 74 GITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +DV Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDV 193 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++ Sbjct: 194 RATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVW 252 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKA 312 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWG+D + + ++R+ ++ +Y + VD Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYARELDPIED-VDQN 371 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF A+ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E E + Sbjct: 372 LYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLAEDEYEQ 431 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469 W + R + L E + +LQ L E GD + ++ L++Y Q ++P Sbjct: 432 WEQLRAERLFEGGGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLFDYAQQIVP 488 >gi|163752570|ref|ZP_02159753.1| exodeoxyribonuclease I [Shewanella benthica KT99] gi|161327543|gb|EDP98744.1| exodeoxyribonuclease I [Shewanella benthica KT99] Length = 470 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 205/467 (43%), Positives = 289/467 (61%), Gaps = 5/467 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +DYETFG + + DRP+QFAG+R D + F+CK A DYLP PEA+ ITG Sbjct: 7 HTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKLATDYLPSPEAILITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ G+ E EF ++++ FS PNTC+ GYN+IRFDD +R FYRNF D Y W Sbjct: 67 ITPQLVNLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRYGFYRNFIDPYAREW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNSRWD++D++RA YAF P+GI+WP ++DG SFKL+ L ANG+ H AHDA +DVY Sbjct: 127 QKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSDVY 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LI++K+PKLF+Y + R K ++ K +D+ NM PLVHVS A T LIAP Sbjct: 187 ATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMLPLVHVSSKISAEHGCTTLIAP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VA H K+++I NL+ D+ +LD+ Q+ +R++T D+L +P+ +K++H+NKCP Sbjct: 247 VAHHSSNKNAIICVNLAMDISPLIELDAEQIRERMYTRRDDLADDELPISVKQIHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + E +R ID E LL+Q LR++ A+++ + + SQD D QLY Sbjct: 307 FITSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNGSQDPDLQLY 366 Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 GFF D++ M+ I T P+ L+ L L F D+RL E+ FRYRARN+P TL E E W Sbjct: 367 SGGFFGSADKEKMEIIRHTLPQNLAALELNFDDQRLKEMLFRYRARNYPATLDESESMKW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + + L EY +L++L + DE K+ L+ AL YL + Sbjct: 427 RDFCQSRLND---PEYMMQLENLVNDTANDEDKQKLLTALCHYLSNL 470 >gi|94500901|ref|ZP_01307427.1| exodeoxyribonuclease I [Oceanobacter sp. RED65] gi|94427020|gb|EAT12002.1| exodeoxyribonuclease I [Oceanobacter sp. RED65] Length = 478 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 195/474 (41%), Positives = 286/474 (60%), Gaps = 6/474 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T YD+ETFG DRPAQFAGVR D I ++F+C+ ADDYLP P A IT Sbjct: 4 TESIYWYDFETFGASPIWDRPAQFAGVRTDLDLNIIAEPDMFYCRQADDYLPHPIACMIT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+PQ G+ EAEF +RIH F P TC+ GYN+IRFDD +RN YRNF+D Y+ Sbjct: 64 GISPQTCQDKGLPEAEFIKRIHDLFMQPQTCVAGYNSIRFDDEVTRNTLYRNFFDPYQRE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD+LD+MR Y+ PDGI+WP +DG SFKL++L+ ANGI H NAHDA +DV Sbjct: 124 WQNGNSRWDILDMMRCAYSLRPDGIEWPKGEDGKVSFKLENLSAANGIIHENAHDALSDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ L L++EK+PKL++YL++ R K + L+D+ N P++H+SGMF + A++ Sbjct: 184 YATIGLAKLVKEKQPKLYQYLFELRRKEAVAPLLDVVNKRPVLHISGMFPVEKGCAAVMV 243 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNK 299 P+A P+ K+++I +L D +L + Q+ RL+T EL+ G+ +P+K +H+NK Sbjct: 244 PLAMEPKNKNAIICFDLMSDPTPLFELTAEQIQARLYTPKAELEAQGIERLPLKSIHINK 303 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 CP+++P + E ++WG+ + NL ++ +L ++ + + ++ + + S Sbjct: 304 CPVVLPAKMVQPEIAKKWGLSGDQIRSNLAKIKNGPDLTEKLQNVMSRDFEAHSDPDAMI 363 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 GFF D+Q M+ I ++ PE L LN+ F DRRL E+ FRYRARN+P TL+ E + Sbjct: 364 YSGGFFGPTDKQAMETIRQSHPEALDDLNISFQDRRLEEMLFRYRARNYPETLTGDEFEQ 423 Query: 420 WLEHRKKMLTRSRIEEYKNK---LQSLSGEYKGDEGKEG-LINALYEYLQWVIP 469 W RK+ L Y N ++L + + L+ L Y + + P Sbjct: 424 WETFRKQRLLGPTNGSYLNYELFAKALQEAAQTAPESQYPLLQDLQMYAESIYP 477 >gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58] gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58] Length = 480 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 283/472 (59%), Gaps = 13/472 (2%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGI Sbjct: 6 SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W Sbjct: 66 TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV A Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R ++ P+ Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVALPL 242 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP+ Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E +R GI+ C + LLRQ D+ A+Y + S+S D + QLY Sbjct: 303 VAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + L+ + + ++ L++ E G ++ A +Y + Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472 >gi|309780540|ref|ZP_07675287.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA] gi|308920695|gb|EFP66345.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA] Length = 479 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 186/477 (38%), Positives = 282/477 (59%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + IT Sbjct: 4 TPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y Sbjct: 64 GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +DV Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR +P+LF++ R K+++ I PL+H+SGM+G R A++ Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVVW 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ HP K+ +I +L+ D D+D + +R+FT +L +G +PIK +H+NK Sbjct: 243 PLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRTADLAEGTTRLPIKSIHINKS 302 Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWGID + + + ++R+ ++ +Y + + VD Sbjct: 303 PIVISNMKTLQPAQAERWGIDFATIERHAAIAQGAPDMRETWRQVYARELEAIED-VDQN 361 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E + Sbjct: 362 LYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYEL 421 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGK--EGLINALYEYLQWVIP 469 W + R + L E + +LQ L E + + + ++ LY+Y Q ++P Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478 >gi|207721998|ref|YP_002252436.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2] gi|206587171|emb|CAQ17755.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2] Length = 489 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 185/477 (38%), Positives = 279/477 (58%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + IT Sbjct: 14 THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLIT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y Sbjct: 74 GITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +DV Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSDV 193 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++ Sbjct: 194 RATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-EAPRPLLHVSGMYGVERGCMAVVW 252 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKA 312 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWG+D + + ++R+ ++ +Y + VD Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYARELDPIED-VDQN 371 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF A+ DR+ ++ + + EQL+ L+ F+D RL EL FRYRARNFP TL+E E + Sbjct: 372 LYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLSELLFRYRARNFPDTLTEDEYEQ 431 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469 W + R + L E + +LQ L E GD + ++ L++Y Q ++P Sbjct: 432 WEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDTRAQNILQDLFDYAQQIVP 488 >gi|322514439|ref|ZP_08067481.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976] gi|322119646|gb|EFX91708.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976] Length = 515 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 212/473 (44%), Positives = 299/473 (63%), Gaps = 6/473 (1%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGDPVMFYCKQTPDYLPSPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ +GV E EF+ R H FS PNTCI+GYNNIR+DD +R F+RNF D Y Sbjct: 61 MVTGITPQQCNAEGVSEPEFAARTHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFVDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ ++ R K +++K+ID MTPLVHVSGMFG +R NTA Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIKKMIDTGEMTPLVHVSGMFGNARGNTA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297 IAP+AWHP ++ V+ C+LSG + + +L L+T +EL + + PVP+K VH+ Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGYVSALLTDSAEELRTHLYTKKEELPENVAPVPLKGVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355 N+CPI+ P E+ R GID +RCLENL LL+ + + +S + Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEASAN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V++ LYDGFF+ D+ M + P++L L F+D R+ L F YRAR++P TLS Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLQPQELEHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ + + ++ ++ + +L + + K L+ L Y + Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAESIDNLFQIHHDNPEKVKLLEDLTAYAAQIA 472 >gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp] gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp] Length = 481 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 184/453 (40%), Positives = 272/453 (60%), Gaps = 11/453 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DRP Q AG+R D +I +C+P+DD LP P A + Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI PQ+ + G+ E EF R+H S P TC GYN++RFDD +R YRNF+D Y Sbjct: 61 TGIDPQRLQQLGLDEGEFVTRVHAELSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GI+WP +G S KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWPQE-EGRVSLKLERLTQANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ L L+RE++P+L+++LY R+K ++ I + + PL+HVSG F A+R A + Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRL--LQPLLHVSGRFSAARHYLAPV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L D +LD+ L RL+T ++L + PVP+K +H+N+ Sbjct: 238 LPLAWHPRNRNALIVCDLQADPAPLLELDADTLRARLYTRREDLAEHEAPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + +R +D C N L+ +D+ IY + ++S D + Sbjct: 298 CPVVAPLSVLRDADRQRLQLDWSVCERNAERLKAAQALWQDKLPTIYREEAFAASTDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ P+ L++ N PF D RLPEL FRYRARNFP +LS E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQVRNAQPQALASQNWPFDDARLPELLFRYRARNFPDSLSPTEQQ 417 Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSG 445 W+E + L + + +++ L L+ Sbjct: 418 RWMEFCRLRLNDAQYGAPNTLAQFRAALDELAA 450 >gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 472 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 323/469 (68%), Positives = 386/469 (82%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +HFVIYDYETFG DVA DRPAQFAG+R+D Q E I+S EVFFCKP+DDYL DPE+V IT Sbjct: 1 MDHFVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKALRDGVVE EF++R++QFF PNTCI GYNNIRFDD YS+NIFYRNFYD Y WS Sbjct: 61 GITPQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWS 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + NGNSRWDL++VMRAIYAFSPDGIQWP RDDG SFKLQDLALANGIE+VNAHDA+ DV Sbjct: 121 YKNGNSRWDLINVMRAIYAFSPDGIQWPHRDDGFPSFKLQDLALANGIEYVNAHDAEQDV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ATLAL L+R +KPKLF YLY+ RNK L+ LIDI+N+TPLVHVS FGA+++NTALIA Sbjct: 181 DATLALARLVRREKPKLFNYLYNSRNKMHLKSLIDIRNLTPLVHVSSKFGAAQANTALIA 240 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHPR + +I CNLSGDM+V QDLDS++L KRLFT HD+L GL PVP+K VH+N+CP Sbjct: 241 PIAWHPRNANEIIACNLSGDMQVLQDLDSIELGKRLFTRHDQLNGLSPVPLKSVHINRCP 300 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +L PI + FER GID KRC++NL LLRQQ +L+++ AIY+KP+ S S+DVDS+LY Sbjct: 301 VLFPIGSFHSKKFERLGIDDKRCVDNLKLLRQQVDLQEKVIAIYDKPFVSLSEDVDSRLY 360 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF +D D ++ D I T PE+LSTLN F+D+RLPEL FRYRARNFPHTL KEKQ WL Sbjct: 361 DGFLSDEDCKMRDCIPLTEPEKLSTLNFQFTDQRLPELLFRYRARNFPHTLDSKEKQAWL 420 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 EHRK + TRSRIEEY+NKL +L YK +E +E L+ L++YLQ ++PK Sbjct: 421 EHRKAIFTRSRIEEYENKLHTLLNAYKSNEREERLVQLLFDYLQLIVPK 469 >gi|161621731|ref|NP_521246.2| exonuclease I [Ralstonia solanacearum GMI1000] Length = 477 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 184/478 (38%), Positives = 281/478 (58%), Gaps = 11/478 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ F +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I Sbjct: 1 MTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y Sbjct: 61 TGITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG++H AHDA +D Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL +R +P+LF++ + R K ++ I + PL+HVSGM+G R A++ Sbjct: 181 VRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAS-RPLLHVSGMYGVERGCLAVV 239 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ WHP K+ ++ +L+ D DL + +RLFT +L +G +PIK +H+NK Sbjct: 240 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINK 299 Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 PI++ + + ERWGID + + + +LR+ ++ +Y + VD Sbjct: 300 SPIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIED-VDQ 358 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E + Sbjct: 359 NLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEYE 418 Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469 W + R + L + + +++ L + D + ++ LY+Y Q ++P Sbjct: 419 QWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 476 >gi|187930471|ref|YP_001900958.1| exonuclease I [Ralstonia pickettii 12J] gi|187727361|gb|ACD28526.1| Exodeoxyribonuclease I [Ralstonia pickettii 12J] Length = 479 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 187/477 (39%), Positives = 280/477 (58%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + IT Sbjct: 4 TPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y Sbjct: 64 GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +DV Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR +P+LF++ R K+++ I PL+H+SGM+G R A++ Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVVW 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ HP K+ +I +L+ D +D + +R+FT +L +G +PIK +H+NK Sbjct: 243 PLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHINKS 302 Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWGID + + + ++R+ ++ +Y + VD Sbjct: 303 PIVISNMKTLQPAQAERWGIDFAMIERHAAIAQGAPDMRETWRQVYARELEPIED-VDQN 361 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E + Sbjct: 362 LYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYER 421 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469 W + R + L E + +LQ L E GD + ++ LY+Y Q ++P Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVP 478 >gi|166711560|ref|ZP_02242767.1| exonuclease I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 481 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 198/473 (41%), Positives = 282/473 (59%), Gaps = 10/473 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA ANG+ +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANGVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIVMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL++ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYSRAADLPEGERRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + FER G+D L L + L ++ + +Y + +++ D Sbjct: 301 SPALVAWQHLRAADFERLGVDRDAVLAKAARLHEMGPELAEKVRQVYGSERAPAAATNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 ++ W +R++ L +E+Y ++ L + D K+ L++ L + Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 473 >gi|294141308|ref|YP_003557286.1| exodeoxyribonuclease I [Shewanella violacea DSS12] gi|293327777|dbj|BAJ02508.1| exodeoxyribonuclease I [Shewanella violacea DSS12] Length = 470 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 204/467 (43%), Positives = 292/467 (62%), Gaps = 5/467 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +DYETFG + + DRP+QFAG+R D + F+CK A+DYLP PEA+ ITG Sbjct: 7 HTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKVANDYLPSPEAILITG 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ A G+ E EF ++++ FS PNTC+ GYN+IRFDD +R FYRNF D Y W Sbjct: 67 ITPQLANLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRFGFYRNFIDPYAREW 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNSRWD++D++RA YAF P+GI+WP ++DG SFKL+ L ANG+ H AHDA +DVY Sbjct: 127 QKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSDVY 186 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LI++K+PKLF+Y + R K ++ K +D+ NM PLVHVS A T LIAP Sbjct: 187 ATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMQPLVHVSSKISAEHGCTTLIAP 246 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 VA H K+++I NL+ D+ +LD+ Q+ R++T D+L +P+ +K++H+NKCP Sbjct: 247 VAHHSTNKNAIICVNLAMDISPLIELDAEQIRDRMYTRRDDLAADELPISVKQIHINKCP 306 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + E +R ID E LL+Q LR++ A+++ + ++SQD D QLY Sbjct: 307 FVTSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNASQDPDFQLY 366 Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 GFF+ D++ M+ I T P+ L+ L F D+RL E+ FRYRARN+P TL E E W Sbjct: 367 SGGFFSSADKEKMEIIRHTLPQNLAALEFNFDDQRLKEMLFRYRARNYPATLDESESMKW 426 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + + L EY +L++L + +E K+ L+ AL YL+ + Sbjct: 427 RDFCQTRLDD---PEYMIRLENLVNDTTDNEDKQKLLTALCHYLRDL 470 >gi|241763393|ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN] gi|241367435|gb|EER61746.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN] Length = 481 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 183/483 (37%), Positives = 280/483 (57%), Gaps = 14/483 (2%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ F+ +DYETFG + DRPAQFA +R D + ++ + +C+PA+DYLPDP++ Sbjct: 1 MSPHTFLWHDYETFGANTRRDRPAQFAAIRTDAELREVGEPLMLYCQPANDYLPDPQSCL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ITGITPQ L GV E EF+ RI F+ P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 ITGITPQLCLEKGVPEHEFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W N RWDLLDV+R YA PDGI WP ++DG+ SFKL+ L+ ANG+ H AHDA + Sbjct: 121 REWQNQCGRWDLLDVVRMTYALRPDGIHWPRKEDGSPSFKLEHLSKANGLAHEAAHDALS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRS 235 DV AT+AL LIR+ P+LF++ K+++ + + P +HVSGMF A R Sbjct: 181 DVRATIALARLIRQHNPRLFDFALSLHKKDRVAAELRLPATALTARPFLHVSGMFPAERG 240 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKE 294 A++ P+A HP K+ VI +L+ D R L + ++ R+F+ +L +G+ +P+K Sbjct: 241 CLAVMWPLASHPTNKNEVIAWDLAHDPRELATLGTDEIRLRMFSRAADLPEGMTRLPVKT 300 Query: 295 VHLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353 +HLNK P+++ ++ +RWGID + ++ + R ++ + A++ +P ++ Sbjct: 301 IHLNKSPMVVGNVNTLTPALAQRWGIDLVQAAQHAEVARSLPDMSGIWPAVFARPAEPAA 360 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 VD LY GF + DR+ ++ + ++L+ F D RL EL +RYRARNFP TLS Sbjct: 361 D-VDQDLYGGFVGNSDRRRLNDLRAMDGQKLAAARTGFDDPRLEELVWRYRARNFPTTLS 419 Query: 414 EKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +E + W HR L ++ ++ + E DE + ++ ALY+Y + + Sbjct: 420 PEEGERWEAHRAACLFDGQGGARTVDRLFTEIDQI-SETADDERTQEILGALYDYAEHIA 478 Query: 469 PKE 471 P+ Sbjct: 479 PER 481 >gi|77360198|ref|YP_339773.1| exonuclease I [Pseudoalteromonas haloplanktis TAC125] gi|76875109|emb|CAI86330.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis TAC125] Length = 481 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 210/472 (44%), Positives = 299/472 (63%), Gaps = 8/472 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYET+G D+P+QFAGVR D I + +CKP DYLP PEA ITGI Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y + Sbjct: 70 TPQVAMKKGLVEAEFIAKIHAQFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL LI++K+PKL+ + + R K L +L+D+ NMTPLVH S A++ T+ +AP+ Sbjct: 190 TIALAKLIKDKQPKLYNFFFSLRGKKALAELVDVFNMTPLVHTSSRIPATQGCTSWVAPM 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 ++HP K++VI +L+ +V DL QL KRL+T +L + +PV +K VHLNKCPI Sbjct: 250 SFHPVNKNAVICFDLTQSPQVLIDLSVEQLRKRLYTKRIDLAEDELPVGLKLVHLNKCPI 309 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361 L P E+ R GID ++CL+NL +L+ + LRD+ ++N+ S++ +VD LY Sbjct: 310 LAPAKTLLPENAARLGIDREQCLKNLAVLKANSELRDKVTEVFNEQGDYSATTNVDYLLY 369 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGF + D+ I PE L+ L L F +++ L FRYRARN+P TL+++E W Sbjct: 370 DGFTSHADKAKFAIIRDAKPEDLADLKLDFENKKFNTLLFRYRARNWPQTLNQQELDQWR 429 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ + L +++ L++L+ E+ E ++ ALY Y Q + Sbjct: 430 QYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481 >gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865] gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865] Length = 481 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 196/477 (41%), Positives = 282/477 (59%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE F+ +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL+EY R+K L+D+ M P++H+S + A+R A + Sbjct: 181 VYATIGMARRFQQHQPKLWEYALRLRDKRFAATLLDVIAMQPVLHISQRYPAARMCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSS--QDV 356 P L+ + ++ F+R GIDH L LR+ L ++ + +Y ++ D Sbjct: 301 SPALVAWQHLREADFQRLGIDHDAVLAKAARLRELGPELAEKVRQVYGNERAAAPAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W +R++ L ++++ ++ L + D K+ L++ L + + Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLDQFHAQIADLRLAHPDDATKQALLDQLAAWGSDL 477 >gi|325578381|ref|ZP_08148516.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392] gi|325160117|gb|EGC72246.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392] Length = 473 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 222/469 (47%), Positives = 309/469 (65%), Gaps = 4/469 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGINPASDRPAQFAGIRTDANFNIIGEPVMLYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ +I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF++ +++R K ++ KL+D MTPLVHVSGM G R N A +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLLDTAEMTPLVHVSGMLGNYRGNCAWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP +++VI C+LSGD+ +V L + L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQL 360 IL P E+ R GID + CL+NL LRQ ++R++ I+ + S +V+++L Sbjct: 306 ILAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF+ D+ M + E+L+ L F D+R+PEL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSSADKNNMAILRDLPAEKLAGHGLAFEDKRIPELLFHYRARHFYKTLNRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 ++R++ L +S + +++ LQ L+ EY + K L+ +YEY ++ Sbjct: 426 QKYRQRKLEQSAV-KFEESLQQLAEEYSDNPTKLNLLQQVYEYGAKLLS 473 >gi|299529972|ref|ZP_07043399.1| exonuclease I [Comamonas testosteroni S44] gi|298721952|gb|EFI62882.1| exonuclease I [Comamonas testosteroni S44] Length = 479 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 190/481 (39%), Positives = 285/481 (59%), Gaps = 14/481 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+AL +GV E EF+ I + T +GYN IRFDD +R +F+RN D Y Sbjct: 61 TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NG RWDLLDV+R +YA P+GIQWP+++DG SF+L+DLA ANG+ H AHDA +D Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236 V AT+AL LIREK+P+LF++ + K+ + + ++ P +HV+GM +R Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295 ++ P+A HP K+ VI +L+ D + +L RLFT EL +G+ +PIK + Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVSRLPIKSI 300 Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 H+NK P+++ + E+WG+D + +++ + R ++ ++K+++ Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKSVF-TREAGEPL 359 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E+Q W +HR L E+ + + +LS DE E ++ LY+Y ++P Sbjct: 420 DEQQRWEQHRAACLIEGQGGARTAEQMFSMIDALSE--SVDERGEEILGDLYDYGSNLVP 477 Query: 470 K 470 + Sbjct: 478 E 478 >gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01] gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01] Length = 481 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 283/475 (59%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DRP Q AG+R D +I +C+P+DD LP P A + Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI PQ+ + G+ E EF R+H S P TC GYN++RFDD +R YRNF+D Y Sbjct: 61 TGIDPQRLQQLGLDEGEFMTRVHAALSTPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GI+WP +DG S KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWP-EEDGRVSLKLERLTQANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ L L+RE++P+L+++LY R+K ++ I + + P++H+SG F A+R A + Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRL--LQPMLHISGRFSAARHYLAPV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L D DLD+ L RL+T ++L +G VPVP+K +H+N+ Sbjct: 238 LPLAWHPRNRNALIVCDLQADPTPLLDLDAEVLRSRLYTRREDLAEGEVPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + +R +D C N+ +LR Q +D+ IY + ++S D + Sbjct: 298 CPVVAPLSVLRDTDRQRLQLDWSHCERNVEMLRDAQPLWQDKLTDIYREESFAASSDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ P+ L+ PF D RLPEL FRYRARNFP +LS E Q Sbjct: 358 QLYDGFIGDRDRRLCEQVRSAQPQSLANDKWPFDDARLPELLFRYRARNFPDSLSPDEGQ 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W++ ++ L+ + ++ L+ L + + + L+ Y + + Sbjct: 418 RWVDFCRQRLSDPQFGAPNTLAQFHAALEQLRADC--NPQQLQLLQQWRAYAEQL 470 >gi|17430149|emb|CAD16834.1| putative exodeoxyribonucleaseIprotein [Ralstonia solanacearum GMI1000] Length = 489 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 183/477 (38%), Positives = 280/477 (58%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + IT Sbjct: 14 THTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLIT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y Sbjct: 74 GITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYARE 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG++H AHDA +DV Sbjct: 134 WQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSDV 193 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL +R +P+LF++ + R K ++ I + PL+HVSGM+G R A++ Sbjct: 194 RATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAS-RPLLHVSGMYGVERGCLAVVW 252 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ WHP K+ ++ +L+ D DL + +RLFT +L +G +PIK +H+NK Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKS 312 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWGID + + + +LR+ ++ +Y + VD Sbjct: 313 PIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIED-VDQN 371 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E + Sbjct: 372 LYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEYEQ 431 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469 W + R + L + + +++ L + D + ++ LY+Y Q ++P Sbjct: 432 WEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488 >gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100] gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris] Length = 481 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 192/477 (40%), Positives = 276/477 (57%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + A+R A + Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + + +R G+D LR+ L ++ + +Y + ++ D Sbjct: 301 APALVAWQHLRSDDLQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPAELGALEARFRDPRLIELLFRYRARNWPQTLSPDE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 Q W +R++ L +E++ ++ L + D K+ L++ L + + Sbjct: 421 HQRWNAYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWGSDL 477 >gi|304413420|ref|ZP_07394893.1| exonuclease I [Candidatus Regiella insecticola LSR1] gi|304284263|gb|EFL92656.1| exonuclease I [Candidatus Regiella insecticola LSR1] Length = 475 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 234/465 (50%), Positives = 320/465 (68%), Gaps = 3/465 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F ++DYETFG++ ALDRP QFAGVR D + I+ V +C PA+DYLP PEAV IT Sbjct: 7 KSTFYVHDYETFGQNPALDRPVQFAGVRTDDDFNIIDDPLVIYCAPANDYLPQPEAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL+ GV EAEF ++IHQ FSV TC +GYNNIRFDD SRNIFYRNFYD Y ++ Sbjct: 67 GITPQYALKHGVNEAEFCQKIHQQFSVAGTCTLGYNNIRFDDEVSRNIFYRNFYDPYAYN 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA YA P+GI WP DG SFKL+ LA ANGI+H+ AHDA +DV Sbjct: 127 WQNGNSRWDLLDVVRACYALRPEGINWPKNADGLPSFKLEHLAKANGIQHLKAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ L L+++ +P+LF+Y Y +R+K++++ LIDI+NMTPLVHVSGMFG RSN +L+A Sbjct: 187 YATIELAKLVKQAQPRLFKYFYHHRSKHKIKALIDIENMTPLVHVSGMFGVRRSNISLVA 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKC 300 P+AWHP K++VI C+L+ D+ LD L + L+T D L +P+K VH+NKC Sbjct: 247 PLAWHPENKNAVIVCDLAADISP-LSLDVNTLREHLYTPKDPLNPQQITIPLKLVHINKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF-KAIYNKPYTSSSQDVDSQ 359 PIL P++ +++ +R ID + CL L LRQ ++++ +VD+Q Sbjct: 306 PILAPVNTWREKETKRLKIDLQYCLNQLESLRQNPQIKEKVNALFKQMTARPKVNNVDAQ 365 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF D D + +I +T+P+ L LN F D RL L FR+RARN+ +TL + E++ Sbjct: 366 LYCGFFNDTDHNTIKKIQQTSPQNLPALNFCFQDPRLETLLFRFRARNYHNTLDDTEQRR 425 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 LE+RK++L+ +I+EY +L L +Y+ +E K L+ +L +Y+ Sbjct: 426 LLEYRKEVLSPEKIKEYILQLNQLCYQYQNNEEKSSLLKSLLDYV 470 >gi|261868004|ref|YP_003255926.1| exonuclease I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413336|gb|ACX82707.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans D11S-1] Length = 475 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 214/474 (45%), Positives = 304/474 (64%), Gaps = 7/474 (1%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEA Sbjct: 2 MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEA 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGITPQ+ G+ E EF+ +I Q FS PNTC++G+NNIR+DD +R FYRNF D Sbjct: 62 VLVTGITPQECNEKGLWEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDP 121 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y +SW NGNSRWDLLD++RA YA PDGI+WP D+G SF+L+ L ANGI H +AHDA Sbjct: 122 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDSAHDA 181 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 +DVYAT+ + LI+ K+PKLF+Y ++ R K ++ KLID M PLVHVSGM G R NT Sbjct: 182 MSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT 241 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEV 295 LIAP+ WHP K++VI C+L+ D+ +L + L+T + L G +PVP+K + Sbjct: 242 TLIAPLTWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLI 301 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQ 354 H+NKCPI+ P ++ ER GID + C +N L++ ++R + + + +S Sbjct: 302 HINKCPIVAPAKTLLPQNAERLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASD 361 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 +V+++LY+GFF+D D+ M + PE+L+ NL F D R+PEL F YRAR+F TL+ Sbjct: 362 NVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNR 421 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++ +K L + +++ +LQ L+ +Y +E L+ +YEY +I Sbjct: 422 AEQIKWQKYCRKKLDAEAL-QFEQRLQELAEQYSNNEENLMLLQKVYEYGTKII 474 >gi|289663122|ref|ZP_06484703.1| exonuclease I [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 481 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 197/477 (41%), Positives = 283/477 (59%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+G+ EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + F+R G+DH+ L LR+ L ++ + +Y + +++ D Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D+ ++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W +R++ L +E+Y ++ L + D K+ L++ L + + Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRLAHPDDANKQALLDQLAAWGSDL 477 >gi|301156280|emb|CBW15751.1| exonuclease I [Haemophilus parainfluenzae T3T1] Length = 473 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 224/474 (47%), Positives = 314/474 (66%), Gaps = 6/474 (1%) Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M N+F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV Sbjct: 1 MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ G+ E EF+ +I FS PNTC++GYNNIR+DD +R FYRNF D Y Sbjct: 61 MVTGITPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R N A Sbjct: 181 ADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296 +AP+AWHP +++VI C+LSGD+ +V L + L+T EL+ G+ +P+K VH Sbjct: 241 WVAPLAWHPTNQNAVIVCDLSGDINNLLSKSAVDLRQDLYTKKSELEERGVSSIPLKLVH 300 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQD 355 +NKCPIL P E+ R GID + CL+NL LRQ ++R++ I++ + S + Sbjct: 301 INKCPILAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSGEREFEPSNN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V+++LY+GFF++ D+ M + E+L+ L F D+R+PEL F YRAR+F TL+ Sbjct: 361 VETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLNRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E+ W ++R++ L +S + +++ LQ L+ EY + K L+ +YEY ++ Sbjct: 421 EQIKWQKYRQRKLEQSAV-KFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLLS 473 >gi|171059394|ref|YP_001791743.1| exonuclease I [Leptothrix cholodnii SP-6] gi|170776839|gb|ACB34978.1| Exodeoxyribonuclease I [Leptothrix cholodnii SP-6] Length = 484 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 271/479 (56%), Gaps = 11/479 (2%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + F +DYETFGR DRPAQFAG+R D +I++ + C+PA DYLPDPE+ +TG Sbjct: 4 HTFFWHDYETFGRSPRSDRPAQFAGIRTDLDLNEIDAPLMQHCQPAPDYLPDPESCLLTG 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I PQ L GV E F+ I + P T +GYN+IRFDD +R++F+RN D Y W Sbjct: 64 IVPQTCLELGVPEHTFADAIEDQLARPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREW 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N RWDLLDV+R YA PDGIQWP DDG SFKL+ L ANGI H AHDA +DV Sbjct: 124 QNECGRWDLLDVVRCCYALRPDGIQWPRHDDGRPSFKLEHLTAANGISHEGAHDALSDVR 183 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID--IQNMTPLVHVSGMFGASRSNTALI 240 AT+AL LI+ +PKLF++ R K+ + I+ + P +H+SGM+G R A++ Sbjct: 184 ATIALARLIKNARPKLFDFCLRLRKKDAVLAEIEGAQRQGRPFLHISGMYGPERGCLAIV 243 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+A HP K+ +I +L+ D LD+ + RLF EL +G+ +PIK +H+NK Sbjct: 244 WPLAPHPTNKNEIIVWDLAEDPGELFTLDAEAIRARLFVKASELPEGVGRLPIKSIHINK 303 Query: 300 CP-ILMPIDYCKKEHFERWGIDHKRCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVD 357 P ++ + E +RWGID + L + L R+ + + ++ +P + DVD Sbjct: 304 SPVVIAQLKTLGAEMAQRWGIDKDQALHHAELAARKGATMAGIWPEVFARPAAAEPPDVD 363 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 LY GF DR+ + R+ APE+L+ F+D RL EL R+RARNFP TL ++E+ Sbjct: 364 EDLYGGFIGQDDRRTLQRVRALAPEKLADKLPTFNDPRLDELLLRWRARNFPQTLRDEER 423 Query: 418 QDWLEHRKKMLTRS-----RIEEYKNKLQSLSGE-YKGDEGKEGLINALYEYLQWVIPK 470 W H + L + + ++ +L + DE ++ ALY+Y + + P Sbjct: 424 ARWERHCARRLHDGAGGAMTLAAFFERIDTLGEALPEDDERGPEILGALYDYAEQIAPP 482 >gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1] gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1] Length = 477 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 188/473 (39%), Positives = 282/473 (59%), Gaps = 9/473 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M++ +DYET G + DRP Q AGVR D +I+ +C+P+DD LP P A + Sbjct: 1 MSSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ G+ EAEF +++ + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 TGITPQLLAEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA PDGIQWP + DG TS +L+ L+ ANGI+H +AH+A +D Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPDGIQWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+ Sbjct: 238 LPLAWHPRNRNALIVCDLHHETLPLLRESAEILRQRLYTRHDELAEGELPVPLKLVQINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP+L P+ + +R G+D L QQ +D+ + IY K + S+D + Sbjct: 298 CPVLAPLSVLRPADQQRLGLDLTLLQSRGEQLANQQAQWQDKLEHIYGKDEFAPSEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLY+GF D DR++ +++ P QLS + F D RLPEL FRYRARNFP TL+ +E Q Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSRGHWMFDDPRLPELLFRYRARNFPETLTSEELQ 417 Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQWV 467 W ++ L+ + + + DE ++ A + + + Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEQARQQAWQGADEAGRRVLEAWQVHARQL 470 >gi|289628502|ref|ZP_06461456.1| exonuclease I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648244|ref|ZP_06479587.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 2250] gi|320325491|gb|EFW81553.1| exonuclease I [Pseudomonas syringae pv. glycinea str. B076] gi|320327221|gb|EFW83235.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4] gi|330868768|gb|EGH03477.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880763|gb|EGH14912.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4] gi|330987779|gb|EGH85882.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 476 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 277/473 (58%), Gaps = 9/473 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D T L + +D+ +Y K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417 Query: 419 DWLEHRKKMLTRSR--IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467 W + ++ L+ + E + ++ +Y Q + Sbjct: 418 RWQDFCQQRLSDPERGAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 470 >gi|240949271|ref|ZP_04753615.1| exonuclease I [Actinobacillus minor NM305] gi|240296387|gb|EER47031.1| exonuclease I [Actinobacillus minor NM305] Length = 514 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 218/471 (46%), Positives = 303/471 (64%), Gaps = 4/471 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F YDYE+FG + A+DRPAQFAG+R D Q+ I +F+CK DYLP PEAV +TGI Sbjct: 6 TFFFYDYESFGVNPAVDRPAQFAGIRTDDQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 PQ+ +G+ E EF+ RIH FS PNTC+IGYNNIR+DD +R F+RNF+D Y +SW Sbjct: 66 LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLDV+RA YA P+GI W ++G +FKL++L ANGI H NAHDA +DVYA Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIDWVKDEEGIPNFKLENLTKANGIAHENAHDAMSDVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+++ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R NTA + P+ Sbjct: 186 TISMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP +++VI C+LSGD++ + S L RL+T EL + PVP+K VH+NKCPI Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQL 360 L P E+ R GID ++CLENL L+ Q + + S +V++ L Sbjct: 306 LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+ D+ M + APE+L+ L F+D R+ +L F YRAR++P TL+ E+ W Sbjct: 366 YDGFFSQADKNNMSILRSLAPEELAHHGLQFADLRVEKLLFHYRARHYPETLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 ++ + L R E++ +++L + DE K L+ L Y+ + + Sbjct: 426 QKYCHQQL-DLRAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQISQDQ 475 >gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306] gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306] Length = 481 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 199/477 (41%), Positives = 282/477 (59%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++HVS + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAAALLDVIAMQPVLHVSQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + FER G+DH + LR L ++ + +Y + ++ D Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W +R++ L + +E+Y ++ L G + D K+ L++ L + + Sbjct: 421 QERWNVYRRQRLLQDRGLGEVTLEQYHAQIADLRGAHPDDATKQALLDQLAAWGSDL 477 >gi|71737440|ref|YP_276156.1| exonuclease I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557993|gb|AAZ37204.1| exodeoxyribonuclease I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 476 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 277/473 (58%), Gaps = 9/473 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLSEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D T L + +D+ +Y K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417 Query: 419 DWLEHRKKMLTRSR--IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467 W + ++ L+ + E + ++ +Y Q + Sbjct: 418 RWQDFCQQRLSDPERGAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 470 >gi|126667153|ref|ZP_01738127.1| exonuclease I [Marinobacter sp. ELB17] gi|126628309|gb|EAZ98932.1| exonuclease I [Marinobacter sp. ELB17] Length = 507 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 206/480 (42%), Positives = 291/480 (60%), Gaps = 11/480 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T F +DYETFG D DRP QFAGVR D + IE V FC+PADDYLP PEA I Sbjct: 26 LTPTFYWHDYETFGVDPLHDRPCQFAGVRTDSELNIIEEPLVIFCRPADDYLPAPEACLI 85 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+A ++G EAEF I+ FS P TC++GYN++RFDD +RN YRN D Y Sbjct: 86 TGITPQQATQEGYPEAEFITMINSAFSQPGTCVVGYNSLRFDDEVTRNTLYRNLRDPYGR 145 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDL+DV+R Y P+GI+WP + DG+ SF+L+DLA ANG+EH AHDA +D Sbjct: 146 EWQNGNSRWDLIDVVRLAYTLRPEGIEWPLKPDGSPSFRLEDLARANGLEHGQAHDAMSD 205 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V ATLAL LI+E++P+LFE+ ++K RK++D P+ HVSG + AS+ + AL+ Sbjct: 206 VTATLALARLIKERQPRLFEFARANKSKQAARKMLDTSTRKPVFHVSGKYPASQGSCALV 265 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 APVA H K+ VI +L + + Q+ +R+FT+ L +G+ P+K + LNK Sbjct: 266 APVAEHASNKNQVIVYDLRENPDELINASVDQIRERVFTAQSALPEGVRRFPLKAIQLNK 325 Query: 300 CPILMPIDYCKKEHFER---WGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQD 355 CP+L P ER +D ++ +L +LRQ + R A + + Y + D Sbjct: 326 CPVLAPATMLAALSPERLQQLNLDGEQMRRHLAILRQAGPDFGQRVAAAFERDYDTKLTD 385 Query: 356 VDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D Q+Y GFF+ DR +DR L P+QL+ F+D+RL E+ FRYRARN+P TLS Sbjct: 386 PDEQIYAGGFFSPSDRTQLDRALAITPQQLAESEFQFTDQRLAEMLFRYRARNYPDTLSG 445 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 ++ + W + R++ LT+ + EY +LQ L + + + ++ L+ Y + + P Sbjct: 446 EDMERWEQFREQRLTQPAKGWLSLAEYGAELQRLMAKPDVTQQQRHILEELHLYGEAISP 505 >gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC10331] Length = 502 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 196/473 (41%), Positives = 279/473 (58%), Gaps = 10/473 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 22 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 81 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T ITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 82 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 141 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 142 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 201 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 202 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 261 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK Sbjct: 262 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 321 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + FER G+D L +R+ L ++ + +Y + +++ D Sbjct: 322 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 381 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E Sbjct: 382 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 441 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 ++ W +R++ L +E+Y ++ L + D K+ L++ L + Sbjct: 442 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 494 >gi|160898944|ref|YP_001564526.1| exonuclease I [Delftia acidovorans SPH-1] gi|160364528|gb|ABX36141.1| Exodeoxyribonuclease I [Delftia acidovorans SPH-1] Length = 479 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 183/481 (38%), Positives = 280/481 (58%), Gaps = 14/481 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F +DYETFG DRPAQFAG+R D + +I +++C+PA DYLPDP++ I Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ L G+ EA+F+ RI + T +GYN IRFDD +R +F+RN D Y Sbjct: 61 TGITPQQCLEQGMPEAQFAARIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NG RWDLLDV+R +YA P+GI WP ++DG+ SFKL+DLA ANG+ H AHDA +D Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLLHEKAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236 V AT+ L LIR+ +P+LF++ + K+++ + + + + P +HVSGM R Sbjct: 181 VRATIGLARLIRKVQPRLFDFAFSLHKKDRVLQEMGLPAEPAHARPFLHVSGMIRPERGC 240 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295 A++ P+A HP K+ +I +L+ D +D L RLF+ +L +G+ +PIK + Sbjct: 241 IAVMWPLATHPTNKNEIICWDLAQDPSELASIDVDTLRLRLFSRAADLPEGMQRLPIKSI 300 Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 H+NK P+++ + +WGID ++C+ + + R ++ ++A++ Sbjct: 301 HVNKSPMVVGSLKTLSAAMAAQWGIDVEQCMGHAAIARDLPDMSALWRAVHQ-RPAQEGL 359 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D D LY GF + DR+ ++ + + ++L+ F D RL EL FRYRARNFP +L+ Sbjct: 360 DADQDLYGGFVGNEDRRRLNHLRSLSAQELALDRTGFDDARLTELLFRYRARNFPASLNP 419 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E+Q WL+H L E+ + LS DE E ++ ALY+Y + ++P Sbjct: 420 AERQRWLQHCAACLIEGKGGARTAEQMFAMVDQLSE--TADERGEEILGALYDYAEAIMP 477 Query: 470 K 470 + Sbjct: 478 E 478 >gi|289669559|ref|ZP_06490634.1| exonuclease I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 481 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 198/477 (41%), Positives = 284/477 (59%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+G+ EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + F+R G+DH+ L LR+ L ++ + +Y + +++ D Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D+ ++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W +R++ L R +E+Y ++ L + D K+ L++ L + + Sbjct: 421 QERWNVYRRQRLLEDRGLGEVILEQYHAQIADLRLAHPDDANKQALLDQLAAWGSDL 477 >gi|300690052|ref|YP_003751047.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07] gi|299077112|emb|CBJ49735.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07] Length = 489 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 185/477 (38%), Positives = 282/477 (59%), Gaps = 11/477 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + IT Sbjct: 14 THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLIT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ R G+ E F++ I + ++P T +GYN+IRFDD +R++F+RN D Y Sbjct: 74 GITPQQCRRQGIPENRFAQAIERELAMPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R +A PDGI+WP DG SFKL+ L+ ANG+ H AHDA +DV Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGIEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDV 193 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR +P+LF++ + R K ++ I PL+HVSGM+G R A++ Sbjct: 194 RATIALARLIRNAQPRLFDFCFALRKKERVLAEIG-DAPRPLLHVSGMYGVERGCLAVVW 252 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ WHP K+ ++ +L+ D DL + + +RLFT EL +G +P+K +H+NK Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGAEAIRERLFTRSAELAEGTARLPVKSIHINKA 312 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI++ + + ERWG+D + + + ++R+ ++ +Y DVD Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFATIERHAAVAQGAPDMRETWRQVYA-RELEPIADVDQN 371 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF ++ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E + Sbjct: 372 LYGGFVSNDDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEEEYEQ 431 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469 W + R + L + + +++ L + D + ++ LY+Y Q ++P Sbjct: 432 WEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488 >gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 481 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 197/473 (41%), Positives = 280/473 (59%), Gaps = 10/473 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + FER G+D L +R+ L ++ + +Y + +++ D Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 ++ W +R++ L +E+Y ++ L + D K+ L++ L + Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 473 >gi|114331862|ref|YP_748084.1| exonuclease I [Nitrosomonas eutropha C91] gi|114308876|gb|ABI60119.1| Exodeoxyribonuclease I subunit C [Nitrosomonas eutropha C91] Length = 486 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 182/476 (38%), Positives = 269/476 (56%), Gaps = 8/476 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ +DYET G + DRP QFAG+R D +I V +CKPA D LP PEA +T Sbjct: 5 TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A G+ E EF IH + P TC +GYN +RFDD +R YRNFYD Y Sbjct: 65 GITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYARE 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWD++D+ R +A P+GI WP +G SF+L+D+ ANG+ H +AHDA +DV Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDV 184 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL L+R+++P+L+++L+ R+K + L+D+ TP++H S M+ + + T L+ Sbjct: 185 RATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVM 244 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ +S++ +L D F L+ L +RLFT EL +G +P+K + LNKC Sbjct: 245 PLLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKC 304 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P L P E +R G++ ++C ++ LL Q + R + Y+ D D L Sbjct: 305 PALAPQKVLNDEIAKRIGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIFPENDADLAL 364 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGF D DR + + + PE+L L+ F D R EL FRYRARNFP TLS +EK W Sbjct: 365 YDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSAQEKHRW 424 Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 H ++ L + +Y+ KL L + + ++ ++N L + + + + Sbjct: 425 QVHCRRQLGEDAINGSLTLNKYRQKLIQLRTDCPQ-QAQQEILNELEAWGRALAQE 479 >gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1] gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1] Length = 484 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 187/474 (39%), Positives = 273/474 (57%), Gaps = 8/474 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F +D+ET G D A DRP QFAG+R D + I +F+C+ A+D LP PEA +TGI Sbjct: 8 SFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +PQ A R+G+ EAEF + + S P TC +GYN IRFDD R FYRNF D Y W Sbjct: 68 SPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPYTREWQ 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N SRWD++D++R YA P+GI WP +DG S KL+ L ANGI H AHDA +DVY Sbjct: 128 NNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDVYG 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ + LIR K+PKLF Y + R K++L++ ID+ + P +H+SGMFG +++ A + P+ Sbjct: 188 TIEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNYAAFVVPI 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A HP K+ VI +L D + DL ++ R+FT +EL L +P+K +H NK P + Sbjct: 248 APHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIHYNKSPAV 307 Query: 304 MPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P + K + +R +D C NL +++ L + ++ + +D D LY Sbjct: 308 APATFLKDVDVVKRLALDGSVCRHNLAIIKGHAGLAAKLSDVFMQEDRPIHKDPDVMLYS 367 Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 GFF+ DR M++I T QLS L + F DRRLPE+ RY RN+P LSE+++ +W Sbjct: 368 GGFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQLSEQQQFEWE 427 Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E+R+ L +E+Y +L ++ ++ ++ L +Y Q + P Sbjct: 428 EYRQVRLLEKDGGGSINMEQYFERLNLIAQTPDLSPAEQVMLQDLADYAQSIYP 481 >gi|325918073|ref|ZP_08180231.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC 35937] gi|325535696|gb|EGD07534.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC 35937] Length = 481 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 195/477 (40%), Positives = 282/477 (59%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q I+ FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVSEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A P+GI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPEGITWPQREDGATSFKLEHLADANAVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMEPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + ++ F+R G+D L LR+ L ++ + +Y + ++ D Sbjct: 301 SPALVAWHHLREPDFQRLGLDRDAVLAKAARLRELGPALAEKVRQVYGNERAAAAAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +APE+L L D RL EL FRYRARN+P TLS E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPEELGALETRLRDPRLVELLFRYRARNWPQTLSFDE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W ++R+K L +++Y ++ L + D K+ L++ L + + Sbjct: 421 QERWNQYRRKRLLEDHGLGEVTLDQYHAQIADLRLAHPDDATKQALLDQLAAWGSDL 477 >gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004] gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str. 8004] Length = 481 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 192/477 (40%), Positives = 279/477 (58%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + A+R A + Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P++ HPR VI +L GD L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLSRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + + F+R G+D LR+ L ++ + +Y + ++ D Sbjct: 301 APALVAWQHLRSDDFQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP +L + F D RL EL FRYRARN+P TLS E Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPGELGAMEARFRDPRLIELLFRYRARNWPQTLSPHE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 Q W ++R++ L +E++ ++ L + D K+ L++ L + + Sbjct: 421 HQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWGSDL 477 >gi|190575052|ref|YP_001972897.1| exonuclease I [Stenotrophomonas maltophilia K279a] gi|190012974|emb|CAQ46606.1| putative exodeoxyribonuclease I [Stenotrophomonas maltophilia K279a] Length = 479 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 193/475 (40%), Positives = 292/475 (61%), Gaps = 8/475 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R +QFA +R D +I++ FF +PADD LP P A + Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+AL +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R + A PDGIQWP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ + L ++ +P+L++Y R+K + L+D+ M P++H+S + ASR A + Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+A HP + VI +L G++ +L + +A+RL+ EL +G+ VP+KEVHLNK Sbjct: 241 LPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358 P L+ ++ + + R G+D + LR L ++ + +YN+P ++ DVD+ Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LYDGF + D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420 Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++R++ L + +Y+ +L +L+ E D ++ L+ +L ++ Q + Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDTRRQALLQSLRDWGQHL 475 >gi|221066347|ref|ZP_03542452.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1] gi|220711370|gb|EED66738.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1] Length = 479 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 195/481 (40%), Positives = 284/481 (59%), Gaps = 14/481 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+AL++GV E EF+ I + T +GYN IRFDD +R +F+RN D Y Sbjct: 61 TGITPQRALQEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLTDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NG RWDLLDV+R +YA PDGIQWP+++DG SFKL+DLA ANG+ H AHDA +D Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPDGIQWPTKEDGTPSFKLEDLARANGLLHEQAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236 V AT+AL LIREK+P+LF++ + K+ + + ++ P +HV+GM +R Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295 A++ P+A HP K+ VI +L+ D + L RLFT EL +G+ +PIK + Sbjct: 241 LAVMWPLATHPTNKNEVICWDLAADPTELSGISIEDLRLRLFTRQAELPEGVSRLPIKSI 300 Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 H+NK P+++ + E+WG+D + + + + R ++ ++KA++ Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMRHAAMARDLPDMSAQWKAVF-TREAGEPL 359 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E+Q W +HR L E+ + SLS DE E ++ LY+Y ++P Sbjct: 420 GEQQRWEQHRAACLIEGQGGARTAEQMFAMIDSLSE--AADERAEEILGELYDYADAMVP 477 Query: 470 K 470 + Sbjct: 478 E 478 >gi|34496784|ref|NP_900999.1| exonuclease I [Chromobacterium violaceum ATCC 12472] gi|34102639|gb|AAQ59004.1| exodeoxyribonuclease I [Chromobacterium violaceum ATCC 12472] Length = 472 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 179/470 (38%), Positives = 274/470 (58%), Gaps = 6/470 (1%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+N F +DYETFG DRP+QFAG+R D + +I + +C+PA DYLP +A Sbjct: 1 MSNHTFFWHDYETFGAVPRQDRPSQFAGIRTDAELNEIGEPVMLYCRPAPDYLPTLQACL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGITPQ + GV E EF+ I + + P T +GYN++RFDD +R +F+RN D Y Sbjct: 61 LTGITPQLCRQQGVAEHEFAGVIERELATPATIGVGYNSLRFDDEVTRFLFWRNLIDPYA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W N RWDLLD++RA YA PDGI WP +DG TSFKL+ L+ ANG+ H +AHDA + Sbjct: 121 REWQNHCGRWDLLDLVRATYALRPDGIVWPKHEDGRTSFKLEHLSAANGLAHASAHDALS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV AT+AL LIR+++PKLF+Y R K+ ++ + + + P++HVSGM+G R N A+ Sbjct: 181 DVRATIALARLIRQRQPKLFDYYLTLRKKDAVKVQLSLHDPKPVLHVSGMYGVERGNLAV 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298 + P+A HP + VI +L+ D + L + + +R+FT DEL +G+ +P+K +H+N Sbjct: 241 VWPLAAHPTNANEVIVWDLAHDPAELRGLSADDIRQRMFTRADELPEGVARLPVKTIHIN 300 Query: 299 KCP-ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 K P ++ + ++ RWG+D + R +L ++ +Y + VD Sbjct: 301 KSPFVVANLKALGDDNAARWGMDLAAIHRHAEAARALPDLSALWRRVYQREAGEPQD-VD 359 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 LY GF ++ DR+ + ++ R + QL+ F D +L EL FRYRARNFP TLS E+ Sbjct: 360 QNLYGGFVSNNDRKALQKMRRLSAAQLAGEMALFEDPQLAELLFRYRARNFPDTLSGDEQ 419 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + W + L + ++ +L L + +G+ L+ + +Y + Sbjct: 420 KRWKAWCQARLAQ-SWPAFQQELAELRA-GELTDGQRNLLQQVADYAASL 467 >gi|77460659|ref|YP_350166.1| exonuclease I [Pseudomonas fluorescens Pf0-1] gi|77384662|gb|ABA76175.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf0-1] Length = 476 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 189/475 (39%), Positives = 285/475 (60%), Gaps = 14/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 YDYET G + DRP Q AG+R D + +I++ +C+P++D LP P A IT Sbjct: 1 MTSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP + G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 GITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDL+DV+RA YA PDG+ WP+ D+G + KL+ L AN I+H NAH+A +DV Sbjct: 121 WQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNIDHGNAHEALSDV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIREK+PKL+++L+ R+K ++ I + + P+VH+SG F A+RS ++ Sbjct: 181 RATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRL--LQPMVHISGRFSAARSYVGVVL 238 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHPR K+++I C+L D + DLD+ L +RL+T D+L +G +PVP+K +H+NKC Sbjct: 239 PLAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKC 298 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQ 359 P++ P+ + + +R G+D L +D+ AIY +S++D + Q Sbjct: 299 PVVAPLSVLRADDQQRLGLDMALYQARALRLSDAQQVWKDKVSAIYASEDFTSNEDPEQQ 358 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF D DR++ +++ T P QL+ PF D RLPEL FRYRARNFP TL+ +E++ Sbjct: 359 LYDGFIGDRDRRLCEQVRATDPGQLAREQWPFDDERLPELLFRYRARNFPDTLNFEEQER 418 Query: 420 WLEHRKKMLT------RSRIEEYKNKLQ-SLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L+ + ++ + ++ L + ++ Y+Q + Sbjct: 419 WRIFCRQRLSAPEWGAPNTLQSFAEAMEQWLLSAA---PMQAEVLVEWQNYVQAL 470 >gi|264679055|ref|YP_003278962.1| exonuclease-like protein [Comamonas testosteroni CNB-2] gi|262209568|gb|ACY33666.1| Exonuclease-like protein [Comamonas testosteroni CNB-2] Length = 479 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 190/481 (39%), Positives = 282/481 (58%), Gaps = 14/481 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+AL +GV E EF+ I + T +GYN IRFDD +R +F+RN D Y Sbjct: 61 TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NG RWDLLDV+R +YA P+GIQWP+++DG SF+L+DLA ANG+ H AHDA +D Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236 V AT+AL LIREK+P+LF++ + K+ + + ++ P +HV+GM +R Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295 ++ P+A HP K+ VI +L+ D + +L RLFT EL +G+ +PIK + Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVTRLPIKSI 300 Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 H+NK P+++ + E+WG+D + +++ + R ++ ++KA++ Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKAVF-TREAGEPL 359 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELAWRYRARNFPQTLDA 419 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E W +HR L E+ + +LS DE E ++ LY+Y ++P Sbjct: 420 GELLRWEQHRAACLIEGQGGARTAEQMFTMIDALSE--SVDERGEEILGDLYDYGSNLVP 477 Query: 470 K 470 + Sbjct: 478 E 478 >gi|330957883|gb|EGH58143.1| exonuclease I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 476 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 197/475 (41%), Positives = 282/475 (59%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I +C+P+DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDADLNEIAPPVNLYCQPSDDILPHPAACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 TGITPTLLAEKGLSEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+P+L++YL+ R+K +++ I + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPRLYDYLFALRSKQKVQDQIRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D D+ L +RL+T H+ L +G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLDQDASTLKQRLYTRHEALSEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E ER +D L + +D+ A+Y K ++S+D + Sbjct: 298 CPVIAPMGVLRSEDQERLQLDMAGYESRAAALNESREVWQDKVLALYGKEDFTASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF AD DR++ +++ PE+L+ PF D RLPEL FRYRARNFPHTLS +E+Q Sbjct: 358 QLYDGFIADRDRRLCEQVRLADPERLAGDAWPFDDTRLPELLFRYRARNFPHTLSREEQQ 417 Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L + ++++ L LS + ++ +Y Q + Sbjct: 418 RWQHFCQERLRNPEWGAPNTLQDFTKALIELSL--NATPDQLDVLRQWQDYAQLL 470 >gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 481 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 196/477 (41%), Positives = 280/477 (58%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + F+R G+DH + LR L ++ + +Y + ++ D Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W +R++ L +E+Y ++ L + D K+ L++ L + + Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHSDDATKQALLDQLAAWGSDL 477 >gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1] Length = 477 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 188/473 (39%), Positives = 283/473 (59%), Gaps = 9/473 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A + Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GIQWP + DG TS +L+ L+ ANGI+H +AH+A +D Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIQWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+ Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + +R G+D L QQ +++ + IY K S S+D + Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFSPSEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLY+GF D DR++ +++ P QLS + F D RLPEL FRYRARNFP TL+ +E+Q Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPETLTGEERQ 417 Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWV 467 W ++ L+ + + + DE ++ A + + + Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEKARQQAWEGADEAGRRVLEAWQLHARQL 470 >gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619] gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619] Length = 478 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 184/474 (38%), Positives = 277/474 (58%), Gaps = 9/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ +DYET G + DRP Q AGVR D + +I+ +C+P+DD LP P A + Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ G+ EAEF R+H ++P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 TGITPQQLASQGLGEAEFMTRVHAQLALPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+R YA P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIR K+PKL+E+L+ R+K+++ + I + + PLVH+SG F A+RS ++ Sbjct: 180 VRATIALARLIRHKQPKLYEWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARSYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNK 299 P+AWHPR ++++I C+L + + + +RL+T +EL P+P+K V +N+ Sbjct: 238 LPLAWHPRNRNALIVCDLQQETLPLLRESAEVIRERLYTRREELSDGQLPIPLKLVQINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + +R GID L QQ + + + IY K S+D + Sbjct: 298 CPVVAPLSVLRAADQQRLGIDLALVQSRAEELANQQNAWQHKLEHIYGKEDFVPSEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLY+GF D DR++ +++ P QL + F D R+PEL FRYRARNFP TL+ +E+Q Sbjct: 358 QLYEGFLGDRDRRLCEQVRTLDPAQLGQGHWMFDDPRMPELLFRYRARNFPETLNSEERQ 417 Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVI 468 W ++ L+ + + DE +++A + + + Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEQARQSAWANADEAGRQVLDAWQAHARQLA 471 >gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25] gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25] Length = 475 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 191/473 (40%), Positives = 275/473 (58%), Gaps = 9/473 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 YDYET G + DRP Q AG+R D + +I + +C+P+DD LP P A IT Sbjct: 1 MTSIFWYDYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILPHPVACAIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 GITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDL+DV+R YA P+GI+WP + DG + KL+ L ANGI+H AHDA +DV Sbjct: 121 WQGGNSRWDLIDVVRTAYALRPEGIEWP-QQDGRVTLKLERLTEANGIDHGQAHDALSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL IREK+PKL+E+L+ R+K ++ + + + P+VH+SG F A R ++ Sbjct: 180 RATIALARRIREKQPKLYEWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAERHYLGVVL 237 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHPR ++++I C+L D + DLD+ L +RL+T + L +G +PVP+K VH+N+C Sbjct: 238 PLAWHPRNRNALIVCDLGLDPQGLLDLDADTLRQRLYTRREALAEGELPVPLKLVHINRC 297 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P++ P++ + E ER +D E L Q RD+ AIY + ++S D + Q Sbjct: 298 PVVAPLNVLRAEDRERLHLDMNIYQERALRLTDAQEVWRDKLAAIYAEEDFAASADPEQQ 357 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL+ +E+Q Sbjct: 358 LYDGFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFRYRARNFPDTLNSEEQQR 417 Query: 420 WLEHRKKMLTRSRI--EEYKNKLQSLSGEYKGDEG--KEGLINALYEYLQWVI 468 W ++ L+ + E+ + G++ EY + Sbjct: 418 WKLFCQQRLSSPEWGAPNTLDAFNQARQEFAVSATSFQHGVLEQWQEYADTLA 470 >gi|56460478|ref|YP_155759.1| exonuclease I [Idiomarina loihiensis L2TR] gi|56179488|gb|AAV82210.1| Exonuclease I [Idiomarina loihiensis L2TR] Length = 479 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 202/474 (42%), Positives = 281/474 (59%), Gaps = 8/474 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + +DRPAQFAG+R D + I + +P D+LP+PEA IT Sbjct: 6 QETFYWHDYETWGANPLVDRPAQFAGLRTDTDFNVIGRPLTLYAQPTPDFLPNPEATLIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A + GV EAEFS+ I F PNT IIGYNNIRFDD +R +FYRNFYD Y +S Sbjct: 66 GITPQLAAKQGVGEAEFSKAIANEFQKPNTTIIGYNNIRFDDEVTRLLFYRNFYDPYEYS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDL+DV+RA +A PDGI WP DG S KL+ L++AN IEH AHDA +DV Sbjct: 126 WQNGNSRWDLIDVVRACFALRPDGINWPENSDGQPSLKLEHLSVANNIEHGQAHDAMSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ L LI EK+PKL+++ Y R K +L L + Q PL HVSG +G + + I Sbjct: 186 YATIGLAKLISEKQPKLWQWAYSIRRKQKLLNLFNWQAPEPLAHVSGFYGTANRYLSAIL 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNK 299 P+ +HP+ +V+ +L F D +L + +TS EL+ GL I+ +HL + Sbjct: 246 PLGFHPKQNSNVVAWDLRVPPMDFADKSVEELTELTYTSRRELEEQGLQKSGIQNIHLGR 305 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDS 358 CP L PI E + +D N L++ ++ RD+ ++ + + DVD Sbjct: 306 CPFLAPIKTISAEAADSAALDTAALETNAKWLQENSDFRDKLMQVFEQTKEFAPRTDVDH 365 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 Q+YDGFF+ D++ M+ I + P QL+ L L F D+R+P L FRYRARN+P TLS+KE Sbjct: 366 QIYDGFFSPQDKKHMEIIRSSEPHQLAGLELDFQDKRMPALLFRYRARNYPSTLSDKELN 425 Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L E + KL+ L+ +++ D K L+ +LY+Y + Sbjct: 426 KWRLFCQQRLIEPPEGLLSAEGFALKLEDLANQHQEDAHKLRLLKSLYDYAASL 479 >gi|120611894|ref|YP_971572.1| exonuclease I [Acidovorax citrulli AAC00-1] gi|120590358|gb|ABM33798.1| Exodeoxyribonuclease I subunit C [Acidovorax citrulli AAC00-1] Length = 478 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 188/479 (39%), Positives = 273/479 (56%), Gaps = 14/479 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F +DYETFG D DRPAQFAG+R D +I + +C+PA DYLPDPE+ +T Sbjct: 1 MHTFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMIYCRPAPDYLPDPESCLLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L G+ E EF+ RI + P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 GITPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R YA PDGI+WP ++DG+ S KL+ L+ ANG+ H AHDA +DV Sbjct: 121 WQNECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237 AT+AL LIRE++P+LFE+ R K+++ + P +HVSGMF A R Sbjct: 181 RATIALARLIRERQPRLFEFALGLRRKDRVAAELRLPATADTARPFLHVSGMFPADRGCL 240 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 ++ P+A HP ++ +I +L+ D LD+ ++ +RLFT +L +G+ +P+K VH Sbjct: 241 GILWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVH 300 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LNK P+++ ++ +RWGID +R + L R ++ + ++ + D Sbjct: 301 LNKSPMVVGNVNTLTPAMAQRWGIDVERAAAHAELARALPDMSAIWAEVFA-RPREAPAD 359 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF + DR+ + R+ P++L+ F D RL EL +R+RARNFP TL E Sbjct: 360 VDQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEA 419 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +++ W R L + +L +L DE E ++ ALYEY + + P Sbjct: 420 DRERWEALRVARLMEGEGGGLTFDALFARLDTLGE--TADERGEAILGALYEYAESIAP 476 >gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1] gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1] Length = 477 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 186/473 (39%), Positives = 283/473 (59%), Gaps = 9/473 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A + Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+ Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + +R G+D L QQ +++ + IY K + S+D + Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFAPSEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLY+GF D DR++ +++ P QLS F D RLPEL FRYRARNFP TL+ +E+Q Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTPEERQ 417 Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWV 467 W + ++ L+ + + + DE ++ A + + + Sbjct: 418 RWYDFCQQRLSEPQWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQLHARQL 470 >gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118] gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118] Length = 481 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 196/477 (41%), Positives = 280/477 (58%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + F+R G+DH + LR L ++ + +Y + ++ D Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W +R++ L +E+Y ++ L + D K+ L++ L + + Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHPDDATKQALLDQLAAWGSDL 477 >gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440] gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440] Length = 477 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 186/473 (39%), Positives = 282/473 (59%), Gaps = 9/473 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A + Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+ Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + +R G+D L QQ +++ + IY K + S+D + Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFAPSEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLY+GF D DR++ +++ P QLS F D RLPEL FRYRARNFP TL+ +E+Q Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTGEERQ 417 Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWV 467 W ++ L+ + + + DE ++ A + + + Sbjct: 418 RWYGFCQQRLSEPQWGAPNTLGDFEKARQQAWEGADEAGRRVLEAWQLHARQL 470 >gi|285018531|ref|YP_003376242.1| exodeoxyribonucleaseIprotein [Xanthomonas albilineans GPE PC73] gi|283473749|emb|CBA16252.1| putative exodeoxyribonucleaseIprotein [Xanthomonas albilineans] Length = 492 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 200/475 (42%), Positives = 283/475 (59%), Gaps = 8/475 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG D R AQFA VR D +IE FF +PADD LP P A I Sbjct: 14 MPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLI 73 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ALR+G+ EA+ RI + + P TC +GYN++RFDD + R+ +RNF+D Y Sbjct: 74 TGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHDPYER 133 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLD++R ++A PDGI WP R+DGATSFKL+ LALANG+ +AH+A +D Sbjct: 134 EWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSD 193 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + R +P+L+EY R+K L+D+ M P++HVS + ASR A + Sbjct: 194 VYATIGMARHFRRCQPRLWEYALKLRDKRFCASLLDVTAMQPVLHVSMRYPASRLCAAPV 253 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR V+ +L GD+ ++A RL+T +L +G + +KEVHLNK Sbjct: 254 LPLTRHPRIDSRVVVFDLEGDINTLLRCTPEEIADRLYTPQADLPEGEQRIALKEVHLNK 313 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 P L+ + ++ FER GID + L +R+ L ++ + ++ + DVD+ Sbjct: 314 APALVAWAHLREAEFERLGIDPAQALAKAARMREAGPTLAEKVRRVFASERATMPADVDA 373 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LYDGF AD D++ M ++ TAP QL+ L F D RLPEL FRYRARN+P TLS E+ Sbjct: 374 SLYDGFLADTDKRAMAQVRATAPMQLAPLEHGFRDPRLPELLFRYRARNWPQTLSIAEQT 433 Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++R++ L+ E Y +L L + D K+ L++ L + Q + Sbjct: 434 RWDDYRRRRLEVDNGLSELTFETYAAQLADLRLAHPEDATKQALLDQLAAWGQDL 488 >gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48] gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48] Length = 476 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 185/475 (38%), Positives = 281/475 (59%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M++ +DYET G + DRP Q AGVR D +IE+ +C+P+DD LP P A + Sbjct: 1 MSSSIFWHDYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 TGITPQQLASQGLCEAEFMTRVHTELARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+R YA P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ L LIR+++PKL+++L+ R+K+++ + + + + PLVHVSG F A R+ ++ Sbjct: 180 VRATIGLARLIRDRQPKLYDWLFQLRSKHKVMEQVRL--LQPLVHVSGRFSAERNYIGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L D + L +RL+T +++ +G +PVP+K VH+N+ Sbjct: 238 LPLAWHPRNRNALIVCDLGQDSAPLLKESAQVLRQRLYTRREDMAEGELPVPLKLVHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + + +R GID + L QQ RD+ I+ + + ++D + Sbjct: 298 CPVVAPLSVIRAQDQQRLGIDMSTLQSHADHLANQQATWRDKLDIIFEEEAFAPTEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ P QL + F D RLPEL FRYRARNF TL E+E Sbjct: 358 QLYDGFIGDRDRRLCEQVRGVDPAQLGQGHWMFDDPRLPELLFRYRARNFADTLDEQELA 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L+ + +++ QS DE ++ A + + Sbjct: 418 RWHGFCRERLSDPKWGAPNTLGDFEVACQSSLA--NADEAGRRVLEAWQAHAGQL 470 >gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6] gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6] Length = 475 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 187/475 (39%), Positives = 273/475 (57%), Gaps = 13/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 YDYET G + DRP Q AG+R D + +I +C+P DD LP P A IT Sbjct: 1 MTSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAACAIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 GITPGVLDEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDL+DV+R YA P+GI+WP + DG + KL+ L AN I+H AHDA +DV Sbjct: 121 WQGGNSRWDLIDVVRTAYALRPEGIEWP-QQDGRVTLKLERLTAANAIDHGQAHDALSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL L+REK+P+L+++L+ R+K ++ + + + P+VH+SG F A R ++ Sbjct: 180 RATIALARLVREKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAERHYLGVVL 237 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHPR ++++I C+L D + D D+ L +RL+T D+L +G +PVP+K VH+N+C Sbjct: 238 PLAWHPRNRNALIVCDLGLDPQGLLDTDAETLRQRLYTRRDDLAEGELPVPLKLVHVNRC 297 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P++ P+ + E ER +D L Q RD+ AIY + +++ D + Q Sbjct: 298 PVVAPLSVLRAEDRERLQLDMAVYQARALRLTDAQELWRDKLAAIYAQEEFAANADPEQQ 357 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL +E+Q Sbjct: 358 LYDGFIGDRDRRLCEQVRMAEPSQLARAQWPFDDHRLPELLFRYRARNFPDTLDSEEQQR 417 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W ++ L+ +E +K L+ ++ ++ EY + Sbjct: 418 WKLFCQQRLSNPEWGAPNTLEAFKQARLELAVSAT--PFQQQVLGQWQEYADSLA 470 >gi|319762823|ref|YP_004126760.1| exodeoxyribonuclease i [Alicycliphilus denitrificans BC] gi|330824902|ref|YP_004388205.1| exodeoxyribonuclease I [Alicycliphilus denitrificans K601] gi|317117384|gb|ADU99872.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans BC] gi|329310274|gb|AEB84689.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans K601] Length = 478 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 279/479 (58%), Gaps = 14/479 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG D DRPAQFA +R D Q +I + +C+PA+DYLPDP++ IT Sbjct: 1 MHTFLWHDYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYCRPANDYLPDPQSCLIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L GV E +F+ RI ++P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 GITPQLCLEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R YA PDGI+WP DG TSF+L++L ANG+ H AHDA +DV Sbjct: 121 WQNQCGRWDLLDVVRLAYALRPDGIEWPV-ADGKTSFRLENLTKANGLAHEAAHDALSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237 AT+AL L+R + P+LF++ R K+++ + Q P +HVSGMFGA R Sbjct: 180 RATIALARLVRARNPRLFDFALGLRKKDRVAAELRLPATAQTARPFLHVSGMFGAERGCL 239 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 A++ P+A HP K+ ++ +L+ D L + ++ +RLFT +L +G+ +P+K VH Sbjct: 240 AVMWPLASHPTNKNELLAWDLAHDPAELATLSADEIRQRLFTRAADLPEGVTRLPLKSVH 299 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LNK P+++ ++ +RWG+D + + R+ ++ + ++ +P D Sbjct: 300 LNKSPMVVGNVNTLTPAVAQRWGLDMAQAARHAEAARRLPDMSAIWAQVFQRPQEG-PVD 358 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF + DR+ ++R+ +PE+L+ F D RL EL +RYRARNFP TLS + Sbjct: 359 VDQDLYGGFLGNEDRRRLNRLRALSPEELARERPGFDDERLAELVWRYRARNFPQTLSPE 418 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E + W HR ML + +L L + DE E ++ A+Y+Y + + P Sbjct: 419 EHERWEAHRVAMLVEGEGGGLTFDALFERLDELGEQ-ADDERTEAILGAIYDYAEGIAP 476 >gi|28871453|ref|NP_794072.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str. DC3000] gi|28854704|gb|AAO57767.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str. DC3000] Length = 476 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 189/475 (39%), Positives = 278/475 (58%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA P+GI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++ Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D L + +D+ + +Y K +S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+ Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + ++ L+ ++++ + L S + ++ ++ + Sbjct: 418 RWQDFCRQRLSSPEWGAPTTLQDFTSALNECSLSAT--PEQLEVLRQWQDHALQL 470 >gi|237798642|ref|ZP_04587103.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021495|gb|EGI01552.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 476 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 192/475 (40%), Positives = 278/475 (58%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I +C+P DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPGDDILPHPAACVI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R K +++ + + + PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRTKQKVQDQVRL--LQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L + L+T HD L +G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQYDAETLKQHLYTRHDALEEGQLPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D L + +D+ + +Y K +S+D + Sbjct: 298 CPVVAPLGVLRSEDQQRLQLDLTAYQARAAQLNDSREVWQDKLQVLYGKDDFVASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDGWPFDDARLPELLFRYRARNFPDTLSTEEQQ 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 WL ++ L ++++ L + + ++ +Y+Q + Sbjct: 418 RWLAFCQQRLRSPESGAPNTLQDFTKAL--IDVSLNATPAQLEVLRQWQDYVQQL 470 >gi|330877835|gb|EGH11984.1| exonuclease I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 476 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 189/475 (39%), Positives = 279/475 (58%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA P+GI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++ Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+ Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D L + +D+ + +Y K +S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSENREVWQDKLQVLYGKDDFVASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS +E+ Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAEEQH 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + ++ L+ ++++ + L S + ++ ++ + Sbjct: 418 RWQDFCRQRLSSPEWGAPTTLQDFTSALTECSLSAT--PEQLEVLRQWQDHALQL 470 >gi|213970280|ref|ZP_03398410.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1] gi|301382938|ref|ZP_07231356.1| exonuclease I [Pseudomonas syringae pv. tomato Max13] gi|302063791|ref|ZP_07255332.1| exonuclease I [Pseudomonas syringae pv. tomato K40] gi|302133521|ref|ZP_07259511.1| exonuclease I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924952|gb|EEB58517.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1] gi|331018014|gb|EGH98070.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 476 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 190/475 (40%), Positives = 278/475 (58%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA P+GI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++ Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D L + +D+ + +Y K +S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+ Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + +K L+ ++++ + L S + ++ ++ + Sbjct: 418 RWQDFCRKRLSSPEWGAPTTLQDFTSALNECSLSAT--PEQLEVLRQWQDHALQL 470 >gi|326316823|ref|YP_004234495.1| exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373659|gb|ADX45928.1| Exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 478 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 186/479 (38%), Positives = 272/479 (56%), Gaps = 14/479 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F +DYETFG D DRPAQFAG+R D +I + +C+PA DYLPDPE+ +T Sbjct: 1 MHTFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMMYCRPAPDYLPDPESCLLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L G+ E EF+ RI + P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 GITPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R YA PDGI+WP ++DG+ S KL+ L+ ANG+ H AHDA +DV Sbjct: 121 WQNECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237 AT+AL LIR+++PKLFE+ R K+++ + P +H SGMF A R Sbjct: 181 RATIALARLIRQRQPKLFEFALGLRRKDRVAAELRLPATADTARPFLHASGMFPADRGCL 240 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 ++ P+A HP ++ +I +L+ D LD+ ++ +RLFT +L +G+ +P+K VH Sbjct: 241 GILWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVH 300 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LNK P+++ ++ +RWGID +R + + R ++ + ++ + D Sbjct: 301 LNKSPMVVGNVNTLTPAMAQRWGIDMERAAAHAEIARALPDMSAIWAEVFA-RPKDAPAD 359 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF + DR+ + R+ P++L+ F D RL EL +R+RARNFP TL E Sbjct: 360 VDQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEA 419 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +++ W R L + +L +L DE E ++ ALYEY + + P Sbjct: 420 DRERWEALRVARLMEGEGGGLTFDALFARLDTLGE--TADERGEAILGALYEYAESIAP 476 >gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 481 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 197/477 (41%), Positives = 281/477 (58%), Gaps = 10/477 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TGITPQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +P+L++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPRLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + FER G+DH + LR L ++ + +Y + ++ D Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ W +R++ L +E+Y ++ L G + D K+ L++ L + + Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRGAHPEDATKQALLDQLAAWGSDL 477 >gi|145631376|ref|ZP_01787147.1| exodeoxyribonuclease I [Haemophilus influenzae R3021] gi|144983035|gb|EDJ90539.1| exodeoxyribonuclease I [Haemophilus influenzae R3021] Length = 473 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 221/473 (46%), Positives = 310/473 (65%), Gaps = 6/473 (1%) Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M +F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV Sbjct: 1 MAKNFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y Sbjct: 61 MVTGITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N Sbjct: 181 ADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCT 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296 +AP+AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH Sbjct: 241 WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVH 300 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQD 355 +NKCPIL P E +R GID + CL+NL LR ++R++ I+N+ +S+ + Sbjct: 301 INKCPILAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V+++LY+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ Sbjct: 361 VETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 421 EQIKWKKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|260914022|ref|ZP_05920495.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325] gi|260631655|gb|EEX49833.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325] Length = 476 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 219/469 (46%), Positives = 301/469 (64%), Gaps = 5/469 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGI Sbjct: 8 SFFIYDYESFGVNPASDRPAQFAGIRTDIDFNIIGEPVMLYCKQTNDYLPSPEAVLVTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW Sbjct: 68 TPQECNEKGISEPEFAERILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W ++G SF+L+ L NGIEH NAHDA ADVYA Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAHDENGMPSFRLEKLTQVNGIEHSNAHDAMADVYA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF++ ++ R K ++ LID+ NMTPLVHVSGM G R NTA + P+ Sbjct: 188 TIAMAKLIKEKQPKLFQFFFENRGKKEIENLIDVANMTPLVHVSGMLGNYRGNTAWVVPL 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301 AWHP +++VI C+LS ++ + +L + L+T EL KG++PVP+K VH+NKCP Sbjct: 248 AWHPINQNAVIVCDLSANLDDLLTKSAAELRQNLYTPKAELLEKGILPVPLKLVHINKCP 307 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359 IL P E+ R GID + CL+NL L+ N+RD I+ S +V+++ Sbjct: 308 ILAPAKVLLPENALRLGIDREFCLQNLQRLKNSANIRDIVTDIFTNEDKVFEPSLNVETE 367 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GFF D+ M + ++L+ L F D+R+PEL F YRAR+ TL+ E+ Sbjct: 368 LYSGFFDFSDKNNMAILRNLPVDKLAEHGLAFKDKRIPELLFHYRARHHFSTLTRAEQIK 427 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W ++R K L +S +E ++ LQ L E + K L+ +YEY ++ Sbjct: 428 WQKYRHKKLEQSAVE-FEQNLQRLIEENHNNPEKLELLKKVYEYGAKLL 475 >gi|30248680|ref|NP_840750.1| exonuclease I [Nitrosomonas europaea ATCC 19718] gi|30180275|emb|CAD84582.1| exodeoxyribonuclease I [Nitrosomonas europaea ATCC 19718] Length = 496 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 184/474 (38%), Positives = 264/474 (55%), Gaps = 8/474 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYET G DRP QFAG+R D +I V +C+PA D LP PEA +TGI Sbjct: 7 TLYWHDYETSGATPRWDRPFQFAGLRTDEALNEIGDPLVIYCQPARDRLPHPEACLLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ A G+ E EF IH + P TC +GYN +RFDD +R YRNFYD Y W Sbjct: 67 TPQMAEARGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFTLYRNFYDPYAREWQ 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +GNSRWD++D+ R +A P+GI WP +G SF+L+D+ ANG+ H +AHDA +DV A Sbjct: 127 SGNSRWDVIDLARMTFALRPEGINWPINGEGKPSFRLEDITTANGLVHDSAHDALSDVRA 186 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL L+R ++P+L+++L+ R+K L+D++ P++H S M+ + T L+ P+ Sbjct: 187 TIALARLLRAQQPRLYDWLFRLRDKRAAGNLLDMKTHAPVLHTSRMYSSEYGCTTLVMPL 246 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 +SV+ +L D F LD LA+RLFT +EL +GL +P+K V LNKCP Sbjct: 247 LPETGNANSVLVYDLRHDPAEFVLLDIDALAERLFTPKEELAEGLQRLPVKAVRLNKCPA 306 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L P E R G++ ++C ++ LL Q + R K Y+ + D D LYD Sbjct: 307 LAPQKVLNDEVANRIGLNVEQCQQHWQLLLQHPDFMQRIKQAYSGNKVFAENDADLALYD 366 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 GF +D DR + + P +L+ L F D R EL FRYRARNFP TLS +E+ W Sbjct: 367 GFASDHDRNLFPLVRDAEPGKLADLAGKFQDERYIELLFRYRARNFPDTLSVQEEHHWQM 426 Query: 423 HRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 H ++ L + + EY KL L + + + ++N L + + + + Sbjct: 427 HCRRQLGENAINGSLTLNEYHQKLLQLRTDCPQ-QAQLDILNELEAWGRVLAQE 479 >gi|145639026|ref|ZP_01794634.1| exodeoxyribonuclease I [Haemophilus influenzae PittII] gi|145271998|gb|EDK11907.1| exodeoxyribonuclease I [Haemophilus influenzae PittII] gi|309750985|gb|ADO80969.1| Exodeoxyribonuclease I [Haemophilus influenzae R2866] Length = 473 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D +MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|315634266|ref|ZP_07889553.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393] gi|315476856|gb|EFU67601.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393] Length = 475 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 217/474 (45%), Positives = 306/474 (64%), Gaps = 7/474 (1%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEA Sbjct: 2 MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPVVLYCKQTNDYLPAPEA 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGITPQ+ G+ E +F+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Sbjct: 62 VLVTGITPQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDP 121 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y +SW NGNSRWDLLD++RA YA P+GI+WP DDG SF L+ L ANGIEH NAHDA Sbjct: 122 YEYSWKNGNSRWDLLDLVRACYALRPNGIEWPLDDDGMPSFHLEKLTKANGIEHTNAHDA 181 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 +DVYAT+ + LI++K+PKLF+Y ++ R K ++ KLI+ MTPLVHVSGM G R NT Sbjct: 182 MSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNT 241 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEV 295 LIAP+AWHP K++VI C+L+ ++ + +L + L+T + L G++PVP+K + Sbjct: 242 TLIAPLAWHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLPVPLKLI 301 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQ 354 H+NKC IL P ++ ER GI+ C +N L ++R + I+ + +S Sbjct: 302 HINKCSILAPEKTLLPQNAERLGINRALCEKNQQRLLASKDVRQKVMDIFQQDREFEASD 361 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 +V+++LY+GFF+D D+ M + PE+L+ NL F D R+P+L F YRAR+F TL+ Sbjct: 362 NVETELYNGFFSDADKNNMAILRTLEPEKLAEHNLSFQDPRIPQLLFHYRARHFYRTLNR 421 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++R+K L + ++ LQ L+ + + DE K L+ +YEY +I Sbjct: 422 AEQIKWQKYRRKKLEAEVL-RFEQSLQELATQNENDEEKLTLLQKVYEYGNKII 474 >gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 481 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 196/473 (41%), Positives = 279/473 (58%), Gaps = 10/473 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T ITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A + Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356 P L+ + + FER G+D L +R+ L ++ + +Y + +++ D Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420 Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 ++ W +R++ L +E+Y ++ L + D K+ L++ L + Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 473 >gi|260582707|ref|ZP_05850495.1| exodeoxyribonuclease I [Haemophilus influenzae NT127] gi|260094273|gb|EEW78173.1| exodeoxyribonuclease I [Haemophilus influenzae NT127] Length = 473 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 223/468 (47%), Positives = 309/468 (66%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KLID MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLIDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKLELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS +L F DRR+PEL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHSLAFEDRRIPELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 QKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans DMS010] gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans DMS010] Length = 479 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 189/474 (39%), Positives = 284/474 (59%), Gaps = 9/474 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYET G D DRP QFAGVR D I + +CKP+ DYLP P+A +T Sbjct: 1 MTTLYWHDYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALVT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+TPQ A ++G+ EAEF ++IH + P TC +GYN++RFDD ++R +RNFYD+Y Sbjct: 61 GLTPQLAEKEGLNEAEFIKQIHDELAAPGTCGVGYNSLRFDDEFTRFTLFRNFYDAYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +GNSRWD++D++R A P+GI WP+R+DG SF+L+DL ANGIEH AHDA ADV Sbjct: 121 WQSGNSRWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIEHSGAHDALADV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + LI+ +PKL++Y+++ R K L L+++ P+VHVS M+ TAL+ Sbjct: 181 YATIEMARLIKNAQPKLYDYVFERRRKQTLAPLLNLNERKPVVHVSRMYPGEYCGTALVV 240 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A P + +I +L D + +LD+ L +RLFT +L +G +K +H+NKC Sbjct: 241 PLAKDPNNNNGIIVYDLRHDPKDLIELDAETLRERLFTPTADLPEGATRPALKTLHINKC 300 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P+++P + ER ID ++L +L L ++ AI+ P D D+ L Sbjct: 301 PVVVPENTLDDAAAERLQIDRTAHYQHLDMLNTAQGLTEKLNAIFTAPTYDEIDDPDASL 360 Query: 361 Y-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+D D++ MD I P L TL++PF D RLPEL FRYRARN+P +L+++E++ Sbjct: 361 YGGGFFSDNDKRKMDVIRNADPAMLPTLSVPFEDPRLPELLFRYRARNWPESLNQEEQEQ 420 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W+ +R+ L +E ++ L + +E ++ ++ L +Y Q + Sbjct: 421 WVLYRQHRLGNQAADKVLNVERFETALAESRQQ-DLNEEQKAVLEQLEQYAQRL 473 >gi|224826521|ref|ZP_03699622.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002] gi|224601122|gb|EEG07304.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002] Length = 475 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 186/477 (38%), Positives = 271/477 (56%), Gaps = 11/477 (2%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ F +DYETFG DRPAQFAG+R D + +I + +C+P+ DYLP PEA Sbjct: 1 MSQHTFFWHDYETFGTVPRQDRPAQFAGIRTDAELNEIGEPVMLYCRPSPDYLPSPEACL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGITPQ + GV E EF+ I + + P T +GYN++RFDD +R +F+RN D Y Sbjct: 61 LTGITPQLCQQHGVAEHEFAGVIERELATPGTIGVGYNSLRFDDEVTRFLFWRNLIDPYA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W N RWDLLD++RA YA P+GI+WP D G SFKL+ L+ ANG+ H AHDA + Sbjct: 121 REWQNQCGRWDLLDLVRATYALRPEGIEWPKHDTGLPSFKLEHLSAANGLAHEAAHDALS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV AT+AL LIR+++PKLFE+ R K+ +R + + PL+HVSGM+GA R N A+ Sbjct: 181 DVRATIALARLIRQRQPKLFEFYLGLRKKDAVRHQLSLHAPRPLLHVSGMYGAERGNLAV 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298 + P+A HP K+ VI +L+ D + L + +RLF+ DEL G+ +PIK +H+N Sbjct: 241 VWPLAEHPSNKNEVIVWDLAYDPAELRGLGPDTIRQRLFSRSDELPDGVSRLPIKTIHIN 300 Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 K P ++ + E + WGID + + NL ++ +Y T + DVD Sbjct: 301 KSPFVVSNLRVLSDERADHWGIDLDAVTRHAETAQALPNLTSVWRKVYQ-RETGAPADVD 359 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 LY GF ++ DR+ + R+ + QL+ F D +L E FRYRARNFP +LS E+ Sbjct: 360 ENLYGGFVSNNDRRELTRLRTLSAVQLAGERPAFDDAQLSEQLFRYRARNFPASLSAAEQ 419 Query: 418 QDWLEHRKKMLTRSRIE-----EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 + W + L I + ++ +L E D + L+ A+ +++ P Sbjct: 420 ERWQSWCRSKLIDGAIPGRHRAQCLEEIATL--EATADARGQTLLAAIRQFVDETAP 474 >gi|329120482|ref|ZP_08249147.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200] gi|327461940|gb|EGF08270.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200] Length = 521 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 220/470 (46%), Positives = 315/470 (67%), Gaps = 4/470 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F IYDYETFG A DRPAQFAG+R D + + +CK +DYLP PE+V IT Sbjct: 52 QPTFFIYDYETFGIHPARDRPAQFAGIRTDPDFNPVADPITLYCKQTNDYLPSPESVLIT 111 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQ+ + GV E EF+ RI FS PNTCI+GYNNIR+DD +R+ FYRNF D Y +S Sbjct: 112 SITPQECNQKGVPEPEFAARICAEFSQPNTCIMGYNNIRYDDEITRHTFYRNFLDPYEYS 171 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + NGNSRWDLLDV+RA +A P+GI+WP ++G F+L+ L ANGIEH +AHDA +DV Sbjct: 172 YQNGNSRWDLLDVVRACHALRPEGIEWPRDENGLPVFRLEQLTAANGIEHAHAHDALSDV 231 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+AL LI++K+P+LF + ++ R K L +IDI+ TPLVH+SGMFG +R NTALIA Sbjct: 232 YATIALAKLIKQKQPRLFRFFFENRGKAPLAAMIDIRRHTPLVHISGMFGNARRNTALIA 291 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNK 299 P++WHP K++VI C+LS D+R +L++ L +RL+T + L +G +PVP+K VH+NK Sbjct: 292 PLSWHPSNKNAVIACDLSADLRDLLNLNADTLRERLYTPKETLLAQGALPVPLKLVHINK 351 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDS 358 CPIL P + + E ER GID+ C NL L+ +R + + I+ + + S +V++ Sbjct: 352 CPILTPRNVLRDEDAERLGIDNTICQNNLAALQNAPEIRQKVQQIFRETRQFAPSDNVET 411 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 +LY+GFF+ D+Q + + PEQL+ LPF D R+P+L F YRAR+F TL+ E+ Sbjct: 412 ELYNGFFSPADKQNLATLRTLPPEQLANHGLPFQDPRIPQLLFHYRARHFYPTLTRAEQI 471 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 W ++R+K L + + ++ LQ+L+ + + K L+ A+Y+Y + ++ Sbjct: 472 QWQKYRRKKL-EAALPDFSQSLQNLAEQNADNPDKLLLLQAVYQYAERLL 520 >gi|145632876|ref|ZP_01788609.1| exodeoxyribonuclease I [Haemophilus influenzae 3655] gi|145634313|ref|ZP_01790023.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA] gi|229844163|ref|ZP_04464304.1| exonuclease I [Haemophilus influenzae 6P18H1] gi|319776340|ref|YP_004138828.1| exonuclease I [Haemophilus influenzae F3047] gi|329123492|ref|ZP_08252056.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116] gi|144986532|gb|EDJ93098.1| exodeoxyribonuclease I [Haemophilus influenzae 3655] gi|145268293|gb|EDK08287.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA] gi|229813157|gb|EEP48845.1| exonuclease I [Haemophilus influenzae 6P18H1] gi|317450931|emb|CBY87157.1| exonuclease I [Haemophilus influenzae F3047] gi|327471074|gb|EGF16529.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116] Length = 473 Score = 368 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T +L+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|301170130|emb|CBW29734.1| exonuclease I [Haemophilus influenzae 10810] Length = 473 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 219/468 (46%), Positives = 306/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA DVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMEDVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|229846770|ref|ZP_04466877.1| exonuclease I [Haemophilus influenzae 7P49H1] gi|229810259|gb|EEP45978.1| exonuclease I [Haemophilus influenzae 7P49H1] Length = 473 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T +L+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|319897029|ref|YP_004135224.1| exonuclease i [Haemophilus influenzae F3031] gi|317432533|emb|CBY80893.1| exonuclease I [Haemophilus influenzae F3031] Length = 473 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 220/473 (46%), Positives = 309/473 (65%), Gaps = 6/473 (1%) Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M +F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV Sbjct: 1 MAKNFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAV 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y Sbjct: 61 MVTGITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLD++RA YA P+GI W D G SF+L+ L ANGIEH NAHDA Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDAGMPSFRLEKLTKANGIEHENAHDAM 180 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N Sbjct: 181 ADVYATIAMGKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCT 240 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296 +AP+AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH Sbjct: 241 WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVH 300 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQD 355 +NKCPIL P E +R GID + CL+NL LR ++R++ I+N+ +S+ + Sbjct: 301 INKCPILAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDN 360 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 V+++LY+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ Sbjct: 361 VETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRA 420 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 421 EQIKWKKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|330950132|gb|EGH50392.1| exonuclease I [Pseudomonas syringae Cit 7] Length = 476 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 191/475 (40%), Positives = 275/475 (57%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I + C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRSDRALQMAGIRTDTDLNEIAAPVNLHCQLSDDILPHPAACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++Y + R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYFFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D T L + D+ A+Y K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSEHREVWHDKLAAVYGKDDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+ Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + ++ L + ++ L + + ++ +Y + Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTAAL--IKCSLSAAPEQLEVLRQWQDYANEL 470 >gi|170717586|ref|YP_001784670.1| exonuclease I [Haemophilus somnus 2336] gi|168825715|gb|ACA31086.1| Exodeoxyribonuclease I [Haemophilus somnus 2336] Length = 476 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 221/470 (47%), Positives = 312/470 (66%), Gaps = 4/470 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D+ + I +F+CK DDYLP PE+V +TGI Sbjct: 6 SFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ G+ E EF+ +I FS PNTCI+GYNN+R+DD +R FYRNF D Y +SW Sbjct: 66 TPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDL+DV+RA YA PDGI W DDG SF+L+ L NGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G R NT+ + P+ Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP +++VI C+L+ D+ +V+L + L+T EL+ ++PVP+K VH+NKCP Sbjct: 246 AWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQDVDSQL 360 IL P E+ + GID + CL+NL LRQ ++RD+ +++ S +V+++L Sbjct: 306 ILAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+ FF++ D+ M + + +PE+L+ NL FSD+R+P+L F YRAR+F TL E+ W Sbjct: 366 YNQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRIPDLLFHYRARHFYKTLDRSEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 ++R++ L +++ LQ L EY+ + K L+ +YEY ++ K Sbjct: 426 QKYRQRKL-EKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLRK 474 >gi|68250106|ref|YP_249218.1| exonuclease I [Haemophilus influenzae 86-028NP] gi|148825915|ref|YP_001290668.1| exonuclease I [Haemophilus influenzae PittEE] gi|68058305|gb|AAX88558.1| exodeoxyribonuclease I [Haemophilus influenzae 86-028NP] gi|148716075|gb|ABQ98285.1| exodeoxyribonuclease I [Haemophilus influenzae PittEE] Length = 473 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 +WHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 QKYRQNKLEKSAVE-FQSGLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|309973062|gb|ADO96263.1| Exodeoxyribonuclease I [Haemophilus influenzae R2846] Length = 473 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+DI MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDIGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 +WHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 QKYRQNKLEKSAVE-FQSGLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|192360953|ref|YP_001983097.1| exonuclease I [Cellvibrio japonicus Ueda107] gi|190687118|gb|ACE84796.1| exodeoxyribonuclease I [Cellvibrio japonicus Ueda107] Length = 497 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 187/482 (38%), Positives = 270/482 (56%), Gaps = 18/482 (3%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +DYET+G A+DRP QFAGVR D + + +PA D LP PEA ITGI Sbjct: 8 TLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+A GV EA+F IH+ + P TC +GYN+IRFDD +R YRNFYD Y W Sbjct: 68 TPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYEREWR 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDL+DV+R A P+GI WP +DG FKL+ L N I H AHDA +DV+A Sbjct: 128 NGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSDVHA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ L++ ++PKL++Y + R+K LIDI PL+H+S F + N AL+ P+ Sbjct: 188 TIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAALVLPL 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 A+HP K+SVI NL+ D +L +L RLFT+ +L +G+ +P+KE+HLNK P+ Sbjct: 248 AYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHLNKTPM 307 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-----RQQTNLRDRFKAIYNKPYTSSSQDVD 357 L+ + R +D C ++L ++ L ++ +Y+ + D + Sbjct: 308 LVTTAMVDETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYSAQDFTGRTDPE 367 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 QLY GFF+D D+++M R+ +P+ L+ F D RLPEL FRYRARNFP +L E+ Sbjct: 368 QQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPESLDPAEQ 427 Query: 418 QDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDE------GKEGLINALYEYLQ 465 Q W + LTR + +++ ++ +L K ++ L +Y Sbjct: 428 QRWFDFCCGRLTRPDQGASLVLSDFRQRIHALLAGLDVQPPQPDPIKKRQILKQLQDYAD 487 Query: 466 WV 467 + Sbjct: 488 SL 489 >gi|329895211|ref|ZP_08270875.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088] gi|328922449|gb|EGG29791.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088] Length = 480 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 195/478 (40%), Positives = 268/478 (56%), Gaps = 11/478 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M++ F +DYETFG A DRP QFAG+R D I V + +P DYLP+P AV + Sbjct: 1 MSDTFYWHDYETFGASPAKDRPCQFAGLRTDANLNVIGDPLVVYSRPTPDYLPNPMAVLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+AL+ G+ E EF RIH S P TC +GYN++RFDD +R YRNF+D Y Sbjct: 61 TGITPQEALQKGLSEREFITRIHAELSQPLTCGVGYNSLRFDDEVTRYTLYRNFFDPYGR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + +GNSRWDL+D++RA YA P+GI+WP DDG S KL+ L ANGIEH AHDA D Sbjct: 121 EYQDGNSRWDLIDLVRASYALRPEGIEWPMSDDGFMSAKLERLTAANGIEHAGAHDALVD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ L LI+ K+PKLFEY R K + + + P++HVSGMFGA +N L+ Sbjct: 181 VKATIELAKLIKTKQPKLFEYYLGLRFKRAAQDQLALGQWRPILHVSGMFGARHANIGLV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 P HP K+ +I +LS D + +L +RL+T D+L G P +K +H+N+ Sbjct: 241 VPAIQHPTNKNEIITIDLSQSPEKLLDYSADELRQRLYTPADQLDGERP-ALKSIHINRA 299 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLR-----DRFKAIYNKPYTSSSQD 355 P + P E R +D EN+ L+ R + +Y + D Sbjct: 300 PFVAPAKMMTDEVAARANLDLVALRENMKALQALMKERGNELLALLRDVYAHKRVAEPTD 359 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + LY GF +D DR++ D+I +P+ L+ + PF DRRL EL FRYRARNFP TLS Sbjct: 360 PEWDLYGGFLSDGDRRLCDQIKSASPQILARSSFPFEDRRLGELLFRYRARNFPDTLSLD 419 Query: 416 EKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 EK W E+ + +TR +E ++ + D L++AL Y ++ Sbjct: 420 EKMQWQEYCFERITREDQGLMHMERLFEEIAVIRQVSDDDPRAMQLMDALESYSDTLL 477 >gi|148826847|ref|YP_001291600.1| exonuclease I [Haemophilus influenzae PittGG] gi|148718089|gb|ABQ99216.1| exodeoxyribonuclease I [Haemophilus influenzae PittGG] Length = 473 Score = 366 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 220/468 (47%), Positives = 307/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EFS I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFSANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 +WHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|332288227|ref|YP_004419079.1| exonuclease I [Gallibacterium anatis UMN179] gi|330431123|gb|AEC16182.1| exonuclease I [Gallibacterium anatis UMN179] Length = 471 Score = 366 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 218/466 (46%), Positives = 299/466 (64%), Gaps = 4/466 (0%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + F IYDYE+FG D A DRPAQFAG+R D+ + I V +CK +DYLP P AV Sbjct: 1 MNDFSFFIYDYESFGVDPARDRPAQFAGIRTDKDFNIIGEPIVLYCKQTNDYLPHPAAVA 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGITPQ + G+ E EF+ +I + FS PNTCI+GYNNIRFDD +R FYRNF D Y Sbjct: 61 LTGITPQLCNQQGISEPEFAAKILEEFSQPNTCIMGYNNIRFDDEMTRYTFYRNFIDPYA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +S+ GNSRWDLLDV+RA YA P+GI W D+G SF+L+ L AN IEH +AHDA + Sbjct: 121 YSYSQGNSRWDLLDVIRATYALRPEGINWVYDDEGMPSFRLELLTKANNIEHSHAHDAMS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DVYAT+ + LI++++PKLF+Y + +R+K ++ +LID NMTPLVHVSGM G RSN + Sbjct: 181 DVYATIEMAKLIKQQQPKLFDYFFTHRSKKEIEELIDYVNMTPLVHVSGMLGNYRSNISW 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHL 297 + P+A HP K++VI C+L+ D+ L +L + L+T EL+ G VP+K VH Sbjct: 241 MVPLAPHPTNKNAVIFCDLAADIDDLLTLSVEELKQNLYTKKAELELQGKKSVPLKLVHC 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 NKCPIL P + + ER GID ++CL NL L+ +R++ I+ + Y + DV+ Sbjct: 301 NKCPILAPAKTLRPQDAERVGIDRQQCLTNLAKLQAMPEIREKVHQIFLEEYDNDYDDVE 360 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 + LY FF+ D+ + + +PEQL+ L F D+R+PEL FRYRAR+F TLS E+ Sbjct: 361 TALYKVFFSYSDKNNLAILRTLSPEQLANHGLTFQDKRIPELLFRYRARHFYKTLSRAEQ 420 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 W ++ L + E+ + + LS +Y DE K L+ LYEY Sbjct: 421 IKWQKYCHAKL-DASSAEFIAEFEMLSAQYANDENKLLLLQNLYEY 465 >gi|113461015|ref|YP_719082.1| exonuclease I [Haemophilus somnus 129PT] gi|112823058|gb|ABI25147.1| Exodeoxyribonuclease I subunit C [Haemophilus somnus 129PT] Length = 486 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 219/470 (46%), Positives = 311/470 (66%), Gaps = 4/470 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D+ + I +F+CK DDYLP PE+V +TGI Sbjct: 16 SFFIYDYESFGINPATDRPAQFAGIRTDQNFNIIGEPVMFYCKQTDDYLPSPESVLVTGI 75 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ G+ E EF+ +I FS PNTCI+GYNN+R+DD +R FYRNF D Y +SW Sbjct: 76 TPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWK 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDL+DV+RA YA PDGI W DDG SF+L+ L NGIEH NAHDA ADVYA Sbjct: 136 NGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYA 195 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G R NT+ + P+ Sbjct: 196 TIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPL 255 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP +++VI C+L+ D+ +V+L + L+T EL+ ++PVP+K VH+NKCP Sbjct: 256 AWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCP 315 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQDVDSQL 360 IL P E+ + GID + CL+NL LRQ ++RD+ +++ S +V+++L Sbjct: 316 ILAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETEL 375 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y FF++ D+ M + + +PE+L+ NL FSD+R+ +L F YRAR+F TL E+ W Sbjct: 376 YKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRISDLLFHYRARHFYKTLDRSEQIKW 435 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 ++R++ L + +++ LQ L EY+ + + L+ +YEY ++ K Sbjct: 436 QKYRQRKL-EKSVVQFEESLQRLVEEYQNNPEELLLLQQVYEYGATLLSK 484 >gi|194366373|ref|YP_002028983.1| exonuclease I [Stenotrophomonas maltophilia R551-3] gi|194349177|gb|ACF52300.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia R551-3] Length = 479 Score = 365 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 190/475 (40%), Positives = 288/475 (60%), Gaps = 8/475 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R +Q+A +R D +I++ FF +PADD LP P A + Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+AL +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R + A P+GIQWP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ + L ++ +P+L++Y R+K + L+D+ M P++H+S + ASR A + Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P++ HP + VI +L GD+ +L + +A+RL+ EL +G VP+KEV LNK Sbjct: 241 LPLSMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358 P L+ ++ + + R G+D LR L ++ + +YN+P ++ DVD+ Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVADVDA 360 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LYDGF D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q Sbjct: 361 SLYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDERQ 420 Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++R++ L + +Y+ +L +L+ E D ++ L+ +L ++ Q + Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSLRDWGQHL 475 >gi|254786919|ref|YP_003074348.1| exonuclease I [Teredinibacter turnerae T7901] gi|237686146|gb|ACR13410.1| exodeoxyribonuclease I [Teredinibacter turnerae T7901] Length = 478 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 191/469 (40%), Positives = 285/469 (60%), Gaps = 8/469 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G + A+DRP+QFAGVR D I V +C+P +D P P+AV +T Sbjct: 1 MRTFYWHDYETWGANPAVDRPSQFAGVRTDENLNIISDPLVIYCQPPEDIWPQPQAVMVT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+PQ A G+ E EF RIH+ + P TC +GYN++RFDD +R +RN++D Y Sbjct: 61 GISPQIARDKGLPEHEFIARIHREMAEPQTCTVGYNSLRFDDEVTRYALFRNYFDPYERE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++R YA P+GI+WP +G SFKL++L ANGI H AHDA +DV Sbjct: 121 WRNGNSRWDIIDMVRLTYALRPEGIEWP-LVEGRPSFKLENLTQANGIAHQAAHDAFSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LI+EK+P+L++Y+ DY K +L +LID+Q+ PL+HVS F A +AL+A Sbjct: 180 EATIALAKLIKEKQPQLYQYVRDYSGKRKLAELIDVQSRKPLLHVSSRFSAEHGCSALVA 239 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A HP K++VI +LS D + D + ++ +RL+ + D+L +G+ +P+K VHLNKC Sbjct: 240 PLAMHPVNKNAVIVFDLSVDPQPLIDASAEEVLQRLYVAADDLPEGVERIPLKLVHLNKC 299 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 PIL + R ID ++ L Q +L+ + A++++ QD + QL Sbjct: 300 PILATPKLLDETAATRLKIDKSLSEQHWQKL-QCADLKSKLTAVFSQNDFPPRQDPEQQL 358 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GF D D++ ++ Q+ N F D RL + RY+ARNFP TLS++E +W Sbjct: 359 YNGFIGDADKRTSVQLRTATAAQIQQHNFVFEDARLSAMVLRYKARNFPETLSDEEAAEW 418 Query: 421 LEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 EH + L E+++ + +L E++G GK L++AL +Y Sbjct: 419 SEHVRLRLMDGGDGCLSYAEFQSTVANLRCEHEGSPGKLALLDALEDYA 467 >gi|260580789|ref|ZP_05848615.1| exonuclease I [Haemophilus influenzae RdAW] gi|260092606|gb|EEW76543.1| exonuclease I [Haemophilus influenzae RdAW] Length = 473 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 219/468 (46%), Positives = 304/468 (64%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L AN IEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E ++ LQ L E+ + K L+ +YEY ++ Sbjct: 426 KKYRQNKLEKSAVE-FEASLQRLVEEHSDNSEKLSLLQQVYEYGIKLL 472 >gi|332306455|ref|YP_004434306.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173784|gb|AEE23038.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 476 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 203/474 (42%), Positives = 286/474 (60%), Gaps = 8/474 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +DYET+G + D QFAG+R D I + F + +DYLP P+A IT Sbjct: 3 TPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACLIT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ +LRDG++E EF +IH FS TC+ GYNNIRFDD +R YRNFYD Y Sbjct: 63 GITPQHSLRDGMIEPEFIEKIHHEFSQAETCVAGYNNIRFDDEVTRYTLYRNFYDPYERE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++DV+RA YA PDGI+WP ++DG+ SFKL+DL+ AN IEH AHDA +DV Sbjct: 123 WRNGNSRWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIEHSAAHDAMSDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + L++ +PKL++YL++ R K + LID Q TPLVH+S A +A Sbjct: 183 YATIGVAKLVKTAQPKLYDYLFNLRLKKNVIALIDTQAHTPLVHISSKLPAINGCCTWVA 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A HP K++ I NLS D++ L ++ ++L+T+ + L +G +PIK VH+NK Sbjct: 243 PIAQHPTNKNAFIMLNLSLDIQPLLALSVEEIIQKLYTASNMLEEGEQRLPIKLVHVNKS 302 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDVDSQ 359 P+L P +E+ R GID + CL+NL LL+Q L ++ K ++ + S Sbjct: 303 PVLAPAKTLNEENAARLGIDRQACLQNLQLLKQHPELVEKLIKVHHSNTEHVPQEADHSL 362 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 GFF+ DR +MD++ ++ PEQL+ L LPF D RL L F Y+ARNFP +L+++E Q Sbjct: 363 YSGGFFSPKDRALMDQVRQSTPEQLADLALPFEDSRLDNLLFYYKARNFPTSLNDQEMQR 422 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W HRK L + +Y L+ L +Y + K ++ ALY Y + + Sbjct: 423 WQNHRKFRLLDDSSPSSITMSDYVQTLELLCEQYHSNSDKLAILKALYTYAEQL 476 >gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 477 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 182/477 (38%), Positives = 276/477 (57%), Gaps = 19/477 (3%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 YDYET G + DRP Q AG+R D + +I+ +C+P+DD LP P A IT Sbjct: 1 MTSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y Sbjct: 61 GITPTCLAEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDL+D++RA YA P GI WP DG + KL+ L ANGI+H AHDA +DV Sbjct: 121 WQGGNSRWDLIDLVRAAYALRPQGIVWPQE-DGRVTLKLERLTAANGIDHGQAHDALSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR+++P+L+++L+ R+K ++ I + + P+VH+SG F A+R+ ++ Sbjct: 180 RATIALARLIRQQQPRLYDWLFQLRSKQKVMDQIRL--LQPMVHISGRFSAARNYIGVVL 237 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKC 300 P+AWHP+ ++++I C+L D + D D+ L +RL+T +E L+G +PVP+K +H+NKC Sbjct: 238 PLAWHPKNRNALIVCDLHLDPQGLLDHDAESLRQRLYTRREELLEGELPVPLKLIHINKC 297 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P++ P+ + E +R +D + + L Q +D+ +AIY + ++S+D + Q Sbjct: 298 PVIAPLSVLRAEDQQRLELDMEGYQQRALRLTDAQKVWQDKLQAIYGREDFTASEDPEQQ 357 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL+ +E Sbjct: 358 LYAGFLGDRDRRLCEQVRMADPLQLTQERWPFDDERLPELLFRYRARNFPDTLNPEEHGR 417 Query: 420 WLEHRKKMLTR---------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L+ + + +L ++ ++ Y Q + Sbjct: 418 WRLFCQQRLSSPEWGAPNTLESFDAAMREWMAL-----STPVQQEVLREWQGYSQQL 469 >gi|152979065|ref|YP_001344694.1| exonuclease I [Actinobacillus succinogenes 130Z] gi|150840788|gb|ABR74759.1| Exodeoxyribonuclease I [Actinobacillus succinogenes 130Z] Length = 471 Score = 364 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 213/472 (45%), Positives = 305/472 (64%), Gaps = 5/472 (1%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV Sbjct: 1 MNDFSFFIYDYESFGINPATDRPAQFAGIRTDADFNVIGEPVMLYCKQTNDYLPSPEAVL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGITPQ+ G+ E EF+ + FS PNTC++GYNNIR+DD +R FYRNF D Y Sbjct: 61 VTGITPQECNEKGLPEPEFAASVLAEFSRPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYE 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +SW NGNSRWDLLD++RA YA P+GI+W DDG SF+L+ L ANGI H NAHDA + Sbjct: 121 YSWKNGNSRWDLLDIVRACYALRPEGIEWAYDDDGMPSFRLERLTEANGIAHENAHDAMS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DVYAT+A+ LI+ K+PKLF+Y ++ R K ++ LI++ +MTPLVHVSGM G R N L Sbjct: 181 DVYATIAMAKLIKRKQPKLFQYFFENRGKREIEHLINVADMTPLVHVSGMLGNYRGNCTL 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHL 297 +APV WHP +++VI C+LS ++ +L L+T +L +G +PVP+K VH+ Sbjct: 241 VAPVGWHPVNQNAVIVCDLSQNIDDLLTKSIEELRTALYTKKTDLAAQGQLPVPLKLVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDV 356 NKCPIL P + E+ ER GID + C ENL LRQ +R + + I+ + + S +V Sbjct: 301 NKCPILAPANTLLPENAERLGIDRQFCSENLQKLRQSFEVRSKIEEIFREEHRFEPSDNV 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 + +LY GFF++ D+ + + + E+L+ L F D+R+P+L F YRAR+F TL+ E Sbjct: 361 EIELYSGFFSNNDKNNLAILRQLPIEKLAEHGLTFEDKRIPDLIFHYRARHFFKTLTRTE 420 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 + W ++R++ L +++ ++Q+L EY E K L++ +Y Y ++ Sbjct: 421 QLQWEKYRRRKL-EKEATDFEQRMQNLVMEYGDFEDKLNLLHQVYAYASNLL 471 >gi|90416366|ref|ZP_01224298.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207] gi|90332091|gb|EAS47305.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207] Length = 478 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 179/469 (38%), Positives = 268/469 (57%), Gaps = 7/469 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M N F +DYETFG + ++DRP+QFAG+R D I V +C+P D LP P+A + Sbjct: 1 MDNTFYWHDYETFGINPSIDRPSQFAGLRTDFDLNPIGEPLVIYCQPQPDLLPAPQACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ AL++G+ E F IHQ S NTC +GYN+IRFDD +R YRNFYD Y+ Sbjct: 61 TGITPQHALKEGLAEPAFIEAIHQQMSRANTCSVGYNSIRFDDEVTRYTLYRNFYDPYQR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++R A P+GI+WP + G SF+L+DL ANG+ H AHDA +D Sbjct: 121 EWKNGNSRWDIIDMLRLCRALRPEGIEWPDHEPGRPSFRLEDLTAANGLAHEAAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+A+ L+++K+P+LF+Y R K Q+ ++D++ P H+SGM + AL+ Sbjct: 181 VTATIAMAKLVKDKQPRLFDYALQNRGKKQVAAMLDLKARKPFFHISGMLAKEQLYGALM 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+A HP + +I +LS D L+ Q+ R+FT+ +L +G +P+K +H+NK Sbjct: 241 MPLAQHPTNSNGIICFDLSADPEALVSLNEHQIRDRVFTASADLPEGAERIPLKVIHINK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P++ +R ID +RC N L L D+ + ++ + D + Q Sbjct: 301 APVVTTHKLVDTATAKRLDIDLERCERNWQRLSSMD-LSDKLQLVFREQKFPPKSDAEQQ 359 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY GF + D+ ++D + R S F+D+R +L F YRAR FP +LS +E+Q Sbjct: 360 LYGGFLPNQDKGLLDDVRRATASDFSQQQFYFADQRYNQLLFSYRARYFPESLSAEEQQT 419 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 WLE + LT +++ + L L + + K G++ AL + Sbjct: 420 WLESCRWRLTDEQSGYLTLQQNRRTLDQLLADTSLSDHKRGVLQALESW 468 >gi|121594205|ref|YP_986101.1| exonuclease I [Acidovorax sp. JS42] gi|120606285|gb|ABM42025.1| Exodeoxyribonuclease I subunit C [Acidovorax sp. JS42] Length = 479 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 188/479 (39%), Positives = 274/479 (57%), Gaps = 14/479 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG + DRPAQFA VR D + +I + +C+PA+DYLPDP++ IT Sbjct: 1 MHTFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L G+ E EF+ RI ++P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 GITPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R YA P+GI+WP DG SF+L+ L+ ANG+ H AHDA +DV Sbjct: 121 WQNQCGRWDLLDVVRLTYALRPEGIEWP-EVDGKPSFRLEHLSKANGLAHEAAHDALSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGASRSNT 237 AT+AL LIR + P+LF++ K+++ Q P +HVSGMF A R Sbjct: 180 RATIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPAERGCL 239 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 A++ P+A HP K+ ++ +L+ D L + ++ RLFT +L +G+ +P+K VH Sbjct: 240 AVMWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVH 299 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LNK P+++ ++ + +RWGID + + R +L + ++ D Sbjct: 300 LNKSPMVVGNLNTLTPDMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQ-RPAEGPLD 358 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF + DR+ ++R+ E+L+ L F D RL EL +RYRARNFPHTLS + Sbjct: 359 VDQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPE 418 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E++ W HR ML + +L +L E DE E ++ A+Y+Y + + P Sbjct: 419 EQERWEAHRVAMLVEGEGGGLTFDALFERLDTLGAE-ADDERTEAILGAVYDYAESIAP 476 >gi|119946086|ref|YP_943766.1| exodeoxyribonuclease I [Psychromonas ingrahamii 37] gi|119864690|gb|ABM04167.1| Exodeoxyribonuclease I subunit C [Psychromonas ingrahamii 37] Length = 486 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 185/469 (39%), Positives = 277/469 (59%), Gaps = 4/469 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +DYETFG + DRPAQFAG+R D I + ++C+P +DYLP+PEA IT Sbjct: 16 QPTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLIT 75 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+AL+ G+VE+EF I+Q FS NTC++GYNNIRFDD +R YRNF D Y+ Sbjct: 76 GITPQRALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQRE 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NG SRWD++D++RA YA P+GI WP ++ A SF+L+ L NG+ H AHDA +DV Sbjct: 136 WKNGCSRWDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKENGLAHQQAHDAMSDV 195 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ LI+E PKL++Y + R KN + + + + TP+VHVSGMF A + + + Sbjct: 196 YATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHVSGMFPALQGCASYVM 255 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ HP K++VI +L+ D+ L Q+ L+T +L +G+ IK +H+NKC Sbjct: 256 PITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKC 315 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 PI+ P +E ++ GID K+C +L L Q L ++ + ++ + S+ ++ Sbjct: 316 PIIAPAKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFIQETPSTENKSVEEM 375 Query: 361 --YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 GF + D+ + + + + L F D RL L + YRARN P +L E++ Sbjct: 376 LYSGGFLSAADKALSEEVCNSTWPALGNKEFNFEDDRLGILLWHYRARNAPDSLDVAEQE 435 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W HR+ L + E Y KL++L+ E + + K L+ LY+YL ++ Sbjct: 436 KWARHRQNYLLENS-EAYIEKLEALALENQSNPEKIELLKQLYDYLNYL 483 >gi|331009925|gb|EGH89981.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 434 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 189/433 (43%), Positives = 269/433 (62%), Gaps = 5/433 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D + T L + +D+ +Y K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417 Query: 419 DWLEHRKKMLTRS 431 W + ++ L+ Sbjct: 418 RWQDFCQQRLSDP 430 >gi|109898489|ref|YP_661744.1| exodeoxyribonuclease I [Pseudoalteromonas atlantica T6c] gi|109700770|gb|ABG40690.1| Exodeoxyribonuclease I subunit C [Pseudoalteromonas atlantica T6c] Length = 476 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 205/474 (43%), Positives = 291/474 (61%), Gaps = 8/474 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +DYET+G + D QFAG+R D I + F + +DYLP+P+A IT Sbjct: 3 TPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPNPQACLIT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ +LRDG+VE +F ++IHQ FS P TC+ GYNNIRFDD +R YRNFYD Y Sbjct: 63 GITPQHSLRDGMVEPDFIQKIHQEFSAPETCVAGYNNIRFDDEVTRYTLYRNFYDPYGRE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++DV+RA YA P+GI+WP +DDG+ SFKL+DL+ AN IEH AHDA +DV Sbjct: 123 WRNGNSRWDIIDVVRACYALRPEGIEWPLKDDGSPSFKLEDLSKANNIEHAAAHDAMSDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 +AT+ + L++ +PKL++YL++ R K + L DI TPLVH+S A IA Sbjct: 183 HATIGMAKLVKTAQPKLYDYLFNLRFKKNVIALFDINAHTPLVHISSKLPAINGCCTWIA 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 PVA HP K++ I NL+ D++ DL ++ ++L+T + L +G +PIK +H+NK Sbjct: 243 PVAQHPTNKNAFIVVNLALDIQPLIDLSVDEIIEKLYTPSNMLEEGEQRLPIKLIHVNKS 302 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P++ P + + R GI+ + CL NL +L+Q L + A+++ + QD D L Sbjct: 303 PVIAPAKTLDESNAARLGINREVCLSNLKVLKQHPELVAKLIAVHSTTRDNKEQDADHAL 362 Query: 361 YDG-FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y G FF+ DR +MD++L ++ EQL+ L LPF D RL L F Y+ RNFP +L+E+E Q Sbjct: 363 YSGAFFSPKDRALMDQVLHSSTEQLADLTLPFEDPRLDNLLFYYKGRNFPTSLNEQELQR 422 Query: 420 WLEHRKKMLTRSRIE------EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W HRK L +Y L+ LS +Y+ + K ++ ALY Y + + Sbjct: 423 WQNHRKFRLLDDTSPSSITMTDYVQTLELLSEQYQSNNDKLAILKALYTYAEQL 476 >gi|331004853|ref|ZP_08328270.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989] gi|330421307|gb|EGG95556.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989] Length = 476 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 186/475 (39%), Positives = 273/475 (57%), Gaps = 13/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +DYET+G + D+P+QFAG+R D + V +C+P+ D LP PEA +T Sbjct: 1 MNTLYWHDYETWGASPSQDKPSQFAGIRTDEDLNIVGEPLVIYCQPSSDCLPQPEACLLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQKAL++G+ E F +IHQ + TC +GYN+IRFDD +R YRNFYD Y Sbjct: 61 GITPQKALKEGLSEPIFFEKIHQQLAQEKTCGVGYNSIRFDDEMTRYGLYRNFYDPYERE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++D++R YA P+ + WP+ D G SFKL+ L+ ANG+ H AHDA +DV Sbjct: 121 WQNGNSRWDIIDMVRLCYALRPETLCWPTNDSGVVSFKLELLSKANGLLHDAAHDALSDV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+AL LI++K+P+L++Y Y R+KN+++ L+++ P++HVS F SR L+ Sbjct: 181 YATIALAKLIKQKQPELYQYAYSLRDKNKVKALMNVAQRKPILHVSSRFPVSRGCAGLML 240 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A HP K+SVI +LS D +L + ++A+RL+ +L +G +P+KE+H NK Sbjct: 241 PLAEHPTNKNSVIAYDLSEDPTPLLELSAEEIAERLYVKQADLPEGASRIPLKEIHFNKS 300 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P++ + + +R GID C + LR + +++ D + QL Sbjct: 301 PMVATVKLLDDQSAQRLGIDKSTCEAHWQQLRAADITSK-LQDVFSTQRFPPKHDPEQQL 359 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGF D+ +M I PE LS + D RL L FRYRAR++P TL+E EKQ W Sbjct: 360 YDGFINSHDKHLMLAIRGAEPETLSHYSSQLKDPRLKALLFRYRARHYPQTLNELEKQQW 419 Query: 421 LEHRKKMLTRSR------IEEYKNKLQSLSGEYKGD-EGKEGLINALYEYLQWVI 468 E LT ++EY +L Y D E + +++ L Y ++ Sbjct: 420 QEWVYSRLTDETAGASIVLDEYFERL----SAYTDDIEANQQIVDDLLAYGDAIL 470 >gi|332141096|ref|YP_004426834.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype'] gi|327551118|gb|AEA97836.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype'] Length = 478 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 192/474 (40%), Positives = 277/474 (58%), Gaps = 8/474 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F+ +D+ETFG D P QFA VR D + A+DYLP PEA +T Sbjct: 5 TPTFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+ +RDG EA+F+ +I+ S PNTC +G+N+IRFDD SR +FYRNFYD Y Sbjct: 65 GITPQQTIRDGSNEADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSRE 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD++DV RA YA PDGI WP R+DG+ SF+L+ L AN I H NAHDA DV Sbjct: 125 WRNGNSRWDIIDVARACYALRPDGINWPLREDGSPSFRLEALTAANNIGHDNAHDALNDV 184 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT++L LI+EK+P+LF+Y RNK+ + + ID+ + L+H+S AS+ + Sbjct: 185 YATISLAKLIKEKQPRLFDYALSLRNKHSVMQQIDLSKPSVLLHISSKLPASQGCCTWVM 244 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKC 300 P+A HP ++ I +LS D+ + + ++ + L+ D P +K +H+N+ Sbjct: 245 PIAKHPTNSNAFIVIDLSHDIDSVLNDSADEIKQALYAPSDTYDDARERPGLKLIHVNRS 304 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + +++ ER G+D +RCL+N L +L + AIY + SS D+D L Sbjct: 305 PFITTAKAMTEDNAERLGLDRERCLDNYKKLASTPDLVSKIVAIYEEERHSSELDIDHAL 364 Query: 361 YDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y G F +D DR+ + ++ PE L+T L +L FRYRARN+P+TLS E Sbjct: 365 YSGGFLSDEDRRWCENVINAKPEDLATFGDKTQHEGLKKLLFRYRARNYPNTLSADEMTK 424 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W HR+ LT S +E Y +L+SL+ E+ + K+ ++ ALY+Y + + Sbjct: 425 WQYHRQARLTDSDFHGSITLETYMMRLESLAHEHSDNPEKQAILRALYQYAENL 478 >gi|222110882|ref|YP_002553146.1| exonuclease i [Acidovorax ebreus TPSY] gi|221730326|gb|ACM33146.1| Exodeoxyribonuclease I [Acidovorax ebreus TPSY] Length = 479 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 186/479 (38%), Positives = 272/479 (56%), Gaps = 14/479 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG + DRPAQFA VR D + +I + +C+PA+DYLPDP++ IT Sbjct: 1 MHTFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLIT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L G+ E EF+ RI ++P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 GITPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYARE 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDLLDV+R YA P+GI+WP DG SF+L+ L+ ANG+ H AHDA +DV Sbjct: 121 WQNQCGRWDLLDVVRLTYALRPEGIEWP-EVDGKPSFRLEHLSQANGLAHDAAHDALSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGASRSNT 237 AT+AL LIR + P+LF++ K+++ Q P +HVSGMF R Sbjct: 180 RATIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPTERGCL 239 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 A++ P+A HP K+ ++ +L+ D L + ++ RLFT +L +G+ +P+K VH Sbjct: 240 AVMWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVH 299 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LNK P+++ ++ +RWGID + + R +L + ++ D Sbjct: 300 LNKSPMVVGNLNTLTPAMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQ-RPAEGPLD 358 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF + DR+ ++R+ E+L+ L F D RL EL +RYRARNFPHTLS + Sbjct: 359 VDQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPE 418 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 E++ W HR +L + +L +L E DE E ++ A+Y+Y + + P Sbjct: 419 EQERWEAHRMAVLVEGEGGGLTFDALFERLDTLGAE-ADDERTEAILGAVYDYAESIAP 476 >gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166] Length = 477 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 278/475 (58%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT YD+ET G + DRP Q AG+R + E+I +C+P DD LP P A + Sbjct: 1 MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP + G+ EA+F +H+ S P TC GYN++RFDD +R YRNFYD Y Sbjct: 61 TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GI WP DG + KL+ L+ ANG+EH+NAHDA +D Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPED-DGRVTLKLERLSAANGLEHLNAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ L LIRE++P+L+EYL++ R K+ + + + + + PLVHVSG F A+R +++ Sbjct: 180 VRATIGLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L + R + L +RL+T DEL +G +PVP+K VH+NK Sbjct: 238 LPLAWHPRNRNALIVCDLQAEARPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358 CP+L P+ ++ +R +D C E LR+Q + + +Y + D + Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF + DR++ DRI AP +L+ F D RL EL FRYRARNFP LS +E+ Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAEERV 417 Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++ L+ + + +++ +Q ++ L+ EY + + Sbjct: 418 RWQRFCQQRLSGEIAGAPNTLAQFEADIQQFML--TATPAQQQLLQQWREYGRAL 470 >gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1] gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1] Length = 482 Score = 362 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 186/476 (39%), Positives = 281/476 (59%), Gaps = 8/476 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + +D+ET G D A DRP QFAG+R D ++ I + +CK A+D LP+P+A +T Sbjct: 6 PSSYFWFDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLLT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A R+G+ EAEF I + S P TC +GYN +RFDD R FYRNF D Y Sbjct: 66 GITPQDANREGLCEAEFMAEIEKELSQPGTCALGYNTLRFDDEVVRYGFYRNFIDPYARE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N SRWD++D++R YA PDGI+WP D+G S KL+ L ANG+ H AHDA +DV Sbjct: 126 WQNKCSRWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKANGLAHEQAHDALSDV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 Y T+A+ LIR+ +PKLF+Y R+K++L++ ID M P +H+SGMFG + A +A Sbjct: 186 YGTIAIAKLIRDTQPKLFDYYAKMRHKSELQQFIDPYRMKPFLHISGMFGLDKKFAAFVA 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+A HP K+ +I +L D L ++ +R+F++ +EL L +P+K +HLN+ P Sbjct: 246 PLAPHPSNKNGIIVYDLMEDATPLVTLTVEEIRQRVFSTTEELGELTRLPLKVIHLNRAP 305 Query: 302 ILMPIDYCK-KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + P + K + ER +D C NL++L+ L + ++ + +D D+ L Sbjct: 306 AVAPATFLKAADVVERLALDGDVCRTNLSILKSTQELVAKLSKVFEQEERRIDKDPDTML 365 Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y GFF+ D+Q M+ I T E L + + F DRRLPE+F RY RN+P LSE+++++ Sbjct: 366 YSGGFFSREDKQRMEEIRSTPIEALGEIEMAFDDRRLPEMFMRYLGRNYPDQLSEQQREE 425 Query: 420 WLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W E+R+ L + ++ + +L L+ + + K ++ L +Y Q + P Sbjct: 426 WEEYRQTRLLNADGGGTIHMDAFFARLNELAQDEELTASKRLMLQDLSDYAQSIYP 481 >gi|16273288|ref|NP_439529.1| exonuclease I [Haemophilus influenzae Rd KW20] gi|1169569|sp|P45188|EX1_HAEIN RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase gi|1574211|gb|AAC23023.1| exodeoxyribonuclease I (sbcB) [Haemophilus influenzae Rd KW20] Length = 473 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 217/468 (46%), Positives = 303/468 (64%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF + Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIEPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L AN IEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R+ L +S +E ++ LQ L + + K L+ +YEY ++ Sbjct: 426 KKYRQNKLEKSAVE-FEASLQRLVEXHSDNSEKLSLLQQVYEYGIKLL 472 >gi|302188463|ref|ZP_07265136.1| exonuclease I [Pseudomonas syringae pv. syringae 642] Length = 476 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 191/475 (40%), Positives = 275/475 (57%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D T L + + D+ +Y K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSERREVWHDKLATVYGKDDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+ Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + ++ L + ++ L + + ++ +Y + Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTAAL--IECSLSAAPEQLEVLRQWQDYAHEL 470 >gi|298488609|ref|ZP_07006639.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156950|gb|EFH98040.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 437 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 189/433 (43%), Positives = 268/433 (61%), Gaps = 5/433 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D T L + +D+ +Y K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417 Query: 419 DWLEHRKKMLTRS 431 W + ++ L+ Sbjct: 418 RWQDFCQQRLSDP 430 >gi|52425136|ref|YP_088273.1| exonuclease I [Mannheimia succiniciproducens MBEL55E] gi|52307188|gb|AAU37688.1| SbcB protein [Mannheimia succiniciproducens MBEL55E] Length = 472 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 216/472 (45%), Positives = 309/472 (65%), Gaps = 5/472 (1%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT+ F IYD+E+FG + A DRPAQFAG+R D+ + I +F+CK +DYLP PEAV Sbjct: 1 MTDFSFFIYDFESFGVNPADDRPAQFAGIRTDKDFNIISDPVMFYCKQTNDYLPAPEAVM 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGITPQ+ G+ E EF+ RI FS PNTCI+G+NNIR+DD +R FYRNF D Y Sbjct: 61 VTGITPQECNEKGISEPEFAARILAEFSQPNTCIMGFNNIRYDDEMTRYTFYRNFIDPYE 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +SW NGNSRWDLLD++RA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA A Sbjct: 121 YSWKNGNSRWDLLDLVRACYALRPEGINWPLDEEGMPSFRLEKLTKANGIEHENAHDAMA 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DVYAT+A+ LI+EK+PKLF++ ++ R K ++ K ID MTPLVHVSGM G R N Sbjct: 181 DVYATIAMAKLIKEKQPKLFQFFFENRGKKEIEKWIDTAEMTPLVHVSGMLGNYRGNCTW 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHL 297 IAP+AWHP +++VI C+L+ ++ + +V+L + L+T EL+ G++PVP+K VH+ Sbjct: 241 IAPLAWHPINQNAVIACDLAQNIDDLLNKSAVELRENLYTQKTELENDGVLPVPLKLVHI 300 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDV 356 NKCPI+ P E+ +R GID + CL+NL L++ ++RD+ ++ + S +V Sbjct: 301 NKCPIIAPAKTLLPENAQRLGIDRQFCLDNLKKLQKSLDIRDKVIEVFNEERKFDDSDNV 360 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 +++LY GFF+ D+ M + PE+L+ L F D+R+P+L F YRAR+F TL+ E Sbjct: 361 ETELYSGFFSKADKNNMTILRTLEPEKLADSGLQFEDKRIPDLLFHYRARHFYKTLNRGE 420 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 + W ++R++ L ++ LQ L E K L+ +Y+Y ++ Sbjct: 421 QIKWQKYRRQKL-EKSAVQFMESLQHLGEENSNHPDKLKLLQQIYDYGIKLL 471 >gi|330973535|gb|EGH73601.1| exonuclease I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 476 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 191/472 (40%), Positives = 273/472 (57%), Gaps = 13/472 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D T L + + AIY K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+ Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417 Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 W + ++ L + + ++ + + ++ +Y Sbjct: 418 RWRDFCQQRLRNPEWGAPNTLHDFTAAW--VECSLSAGPEQLEVLRQWQDYA 467 >gi|332526171|ref|ZP_08402306.1| exonuclease I [Rubrivivax benzoatilyticus JA2] gi|332110011|gb|EGJ10639.1| exonuclease I [Rubrivivax benzoatilyticus JA2] Length = 492 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 187/480 (38%), Positives = 273/480 (56%), Gaps = 13/480 (2%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F +DYETFGR DRPAQFAG+R D + +I + ++FC+P D LPDPE+ Sbjct: 14 MAETTFFWHDYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDTLPDPESCL 73 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI PQ+AL +GV E EF+ RI + P T +GYN+IRFDD +R +F+RN D Y Sbjct: 74 LTGILPQQALAEGVAEREFAARIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYA 133 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W NG RWDLLDV+R +A P+GI+WP +DG SFKL+ L ANG+ H AHDA + Sbjct: 134 REWQNGCGRWDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALS 193 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV AT+AL LIR+++P+L+++ R+K+ +R I + P +H+SGM+G A+ Sbjct: 194 DVRATIALARLIRQRQPRLWDFCLKLRHKDAVRTEIGV--GRPFLHLSGMYGVENGCMAV 251 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHL 297 + P+A HP ++ +I +L+ D LD+ + +R++T +EL G +PIK VHL Sbjct: 252 VWPLAPHPTNRNELIVWDLAQDPAELASLDAETVRRRMYTKTEELAAAGETRLPIKTVHL 311 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDV 356 NK P+++ ERWG+D +R L + + + ++ KP DV Sbjct: 312 NKSPVVIGNLKTLGPARERWGLDLERALVHAERAAALGRTLEPLWAQVFVKPAAGGPVDV 371 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D LY GF D DR+ + R+ L++ F D RL EL FRYRARNF TL E Sbjct: 372 DEDLYGGFLGDEDRRQLQRLRGLDGAALASRRPAFDDPRLDELLFRYRARNFADTLDADE 431 Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSG--EYKGDEGKEGLINALYEYLQWVIP 469 ++ W HR L ++ Y ++ L+ + DE + ++ ALY++ + V P Sbjct: 432 RERWAAHRHARLIAGAGGVLTLQAYAERIDELAEAAAERDDERAQSILEALYDWAEQVAP 491 >gi|330981526|gb|EGH79629.1| exonuclease I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 476 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 271/475 (57%), Gaps = 13/475 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H A DA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAPDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D + L +RL+T HD L G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D L + + D+ A+Y K +S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKDDFVASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+ Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417 Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W + ++ L + ++ + + ++ +Y + Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTTAW--VECSLSAAPEQLEVLRQWQDYANKL 470 >gi|66047247|ref|YP_237088.1| exonuclease I [Pseudomonas syringae pv. syringae B728a] gi|63257954|gb|AAY39050.1| Exodeoxyribonuclease I [Pseudomonas syringae pv. syringae B728a] Length = 476 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 190/472 (40%), Positives = 272/472 (57%), Gaps = 13/472 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPAACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T HD L PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALSDGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D T L + + AIY K ++S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+ Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417 Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 W + ++ L + + ++ + + ++ +Y Sbjct: 418 RWRDFCQQRLRNPEWGAPNTLHDFTAAW--VECSLSAGPEQLEVLRQWQDYA 467 >gi|330966612|gb|EGH66872.1| exonuclease I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 431 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 188/433 (43%), Positives = 265/433 (61%), Gaps = 5/433 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA P+GI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+P+L++YL+ R K +++K I + M PLVH+SG F A+RS ++ Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQKHIHL--MKPLVHISGRFSAARSYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+ Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358 CP++ P+ + E +R +D L + +D+ + +Y K +S+D + Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESREVWQDKLQVLYGKDDFVASEDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+ Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSTAEQH 417 Query: 419 DWLEHRKKMLTRS 431 W + ++ L+ Sbjct: 418 RWQDFCRQRLSSP 430 >gi|15602476|ref|NP_245548.1| exonuclease I [Pasteurella multocida subsp. multocida str. Pm70] gi|12720883|gb|AAK02695.1| SbcB [Pasteurella multocida subsp. multocida str. Pm70] Length = 475 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 220/468 (47%), Positives = 307/468 (65%), Gaps = 4/468 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG D A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 8 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW Sbjct: 68 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W ++G SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KLID N+TPLVHVSGM G R NT I P+ Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301 AWHP +++VI C+L+ ++ + D+ +L + L+T EL KG++PVP+K VH+NKCP Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 307 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E+ R GID CLENL L+ +RD+ I+N+ + + S +V+++L Sbjct: 308 ILAPAKTLLPENAARLGIDRTFCLENLQRLKLSPPIRDKVTEIFNEERHFAPSINVETEL 367 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF D+ M + E+L+ L F D R+P+L F YRAR++ ++L+ E+ W Sbjct: 368 YNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDTRIPKLLFHYRARHYFNSLTRAEQIQW 427 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 ++R K L + + +++ LQ L E + L+ +YEY ++ Sbjct: 428 QKYRHKKLDQVAL-QFEQSLQRLIAENSENPTNLALLQKVYEYGAKIL 474 >gi|90022039|ref|YP_527866.1| exonuclease I [Saccharophagus degradans 2-40] gi|89951639|gb|ABD81654.1| Exodeoxyribonuclease I subunit C [Saccharophagus degradans 2-40] Length = 485 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 185/478 (38%), Positives = 286/478 (59%), Gaps = 16/478 (3%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F +DYET+G + A+DRP+QFAGVR D I V +CKP +D P+PEA + Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+TPQ+ L GV E EF ++IH+ + P TC +GYN+IRFDD +R YRN++D Y Sbjct: 61 TGLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWD++D++R YA P+GI+WP DG SF+L++L NGI H +AHDA +D Sbjct: 121 EWRNGNSRWDIIDMVRLCYALRPEGIEWPV-VDGKPSFRLENLTKVNGIVHASAHDAYSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ L L+REK+P L+E++ + R K + KL+D+ + P++H+S F + LI Sbjct: 180 VEATIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLI 239 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 AP+A+HP K++VI NL+ D + DL + ++ R+FT+ +L +G+ +P+K +HLNK Sbjct: 240 APLAYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNK 299 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 CPIL+ ++ R GID +C ++ + L++ ++ + ++ S D + Sbjct: 300 CPILLTPKILDEQAQARLGIDKAQCEKHWSQLQRMDIT-EKLQQVFATNEFEGSLDPERM 358 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF D D+ +M + + +LS N FSD+RL ++ RY+ARNFP L++ E+ + Sbjct: 359 LYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSERAE 418 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEG--------KEGLINALYEYL 464 W E + L + E +KL ++ E + + K +I AL +Y+ Sbjct: 419 WREFVSQRLKDGGDGVLSLSELNDKLVNIRAELEQQQDQSPEQIAKKLDIIKALEQYV 476 >gi|239994498|ref|ZP_04715022.1| exodeoxyribonuclease I [Alteromonas macleodii ATCC 27126] Length = 476 Score = 359 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 191/473 (40%), Positives = 275/473 (58%), Gaps = 8/473 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +D+ETFG D P QFA VR D I A+DYLP PEA +TG Sbjct: 4 PTFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVIGKPINIMSAIANDYLPHPEACLVTG 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+ +RDG EA+F+ RI+Q S PNTC +G+N+IRFDD SR +FYRNFYD Y W Sbjct: 64 ITPQQTIRDGSNEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREW 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD++D+ RA YA PDGI WP R+DGA SFKL+ L AN I H NAHDA +DVY Sbjct: 124 RNGNSRWDIIDLARACYALRPDGINWPRREDGAPSFKLEALTAANNIGHENAHDALSDVY 183 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+AL LI+EK+P+LF+Y R+K + + ID+ + L+H+S AS+ + P Sbjct: 184 ATIALAKLIKEKQPRLFDYALSLRSKQTVMQQIDLTKPSVLLHISSKLPASQGCCTWVMP 243 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCP 301 VA HP ++ I +LS D+ + ++ + L+ D + P +K +H+N+ P Sbjct: 244 VAKHPTNNNAFIAIDLSHDIDSLVNDTPEEIRQALYAPSDTFDDALERPGLKLIHVNRSP 303 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + +++ R G+D +RCL+N +L L + +Y+ S D+D LY Sbjct: 304 FITTAKAMTEDNAARLGLDRERCLDNYKVLASMPELATKIVDVYDDDIQSGELDIDHALY 363 Query: 362 DGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 G F D DR+ +R++ P+ L+TL+ L + FRYRARN+P+TL+ E W Sbjct: 364 SGGFLNDEDRRWCERVIEAQPDDLATLSEKTQHEGLRKQLFRYRARNYPNTLTADEMTRW 423 Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 HR+ LT S +E Y +L+SL+ E+ + K+ ++ ALY+Y + + Sbjct: 424 QHHRQARLTDSAFHGSITLENYMMRLESLAHEHSDNPEKQAILRALYQYAENL 476 >gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c] Length = 478 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 181/474 (38%), Positives = 265/474 (55%), Gaps = 7/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +F+ YD ETFG+D R AQFA VR D + IE F KPADD LP P+A I Sbjct: 1 MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y Sbjct: 61 TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D Sbjct: 121 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A + Sbjct: 181 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HP + +I +L+GD+ L + +A RL+T +L +G +P+KEVHLNK Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P L+ + + F R G+D LR +++ D D+ Sbjct: 301 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 360 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF + DR+ + ++ + P+ L+T D RL EL FRYRARNFP TLS E+ Sbjct: 361 LYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQTR 420 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W +R+ LT +++Y ++ L + D K+ L++ L + + Sbjct: 421 WDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASWGSEL 474 >gi|9107140|gb|AAF84824.1|AE004021_1 exodeoxyribonuclease I [Xylella fastidiosa 9a5c] Length = 494 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 181/474 (38%), Positives = 265/474 (55%), Gaps = 7/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +F+ YD ETFG+D R AQFA VR D + IE F KPADD LP P+A I Sbjct: 17 MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 76 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y Sbjct: 77 TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D Sbjct: 137 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 196 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A + Sbjct: 197 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 256 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HP + +I +L+GD+ L + +A RL+T +L +G +P+KEVHLNK Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 316 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P L+ + + F R G+D LR +++ D D+ Sbjct: 317 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 376 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF + DR+ + ++ + P+ L+T D RL EL FRYRARNFP TLS E+ Sbjct: 377 LYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQTR 436 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W +R+ LT +++Y ++ L + D K+ L++ L + + Sbjct: 437 WDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASWGSEL 490 >gi|329907300|ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480] gi|327547025|gb|EGF31914.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480] Length = 477 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 181/475 (38%), Positives = 274/475 (57%), Gaps = 10/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ F+ +DYETFG + DRPAQFA +R D + +I + +C+PA+DYLPDP++ IT Sbjct: 3 SHTFLWHDYETFGVNTRSDRPAQFAAIRTDAELNEIGDEIMLYCQPANDYLPDPQSCLIT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L+ G+ E +F+ I FS T +GYN IRFDD +R +F+RN D Y Sbjct: 63 GITPQVCLQRGLPEYQFAAAIEAAFSASGTVGVGYNTIRFDDEITRFLFWRNLIDPYARE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N RWDL+DV+R YA P+GI WP D+G SF+L+ L ANGI H AHDA +DV Sbjct: 123 WQNQCGRWDLMDVVRMTYALRPEGIHWPMNDEGKPSFRLELLTKANGIAHAAAHDALSDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR ++PKLF++ + K+++ I + P +HVSGMF A R ++ Sbjct: 183 RATIALARLIRTQQPKLFDFCFALHKKDRVSAEIGLPARKPFLHVSGMFPAERGCLGVMW 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A +P K+ VI +LS D LD+ + R+FT +L +G+ +PIK +HLNK Sbjct: 243 PLATYPTNKNEVIAWDLSHDPSELATLDADTIRLRMFTRSADLPEGVTRLPIKTIHLNKS 302 Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P+++ + E+W ID ++ + T+ ++ ++ ++ +P ++ VD Sbjct: 303 PMVVGNLKTLSPAMAEKWQIDLEQAHRHATIAATLVDMDALWQQVFQRPAQATPD-VDED 361 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LY+GF + DR+ + + +P L+ + F D RL EL FRYRARNFP TL E + Sbjct: 362 LYNGFVGNGDRRKLTELRALSPTALAKTHPGFDDVRLEELLFRYRARNFPDTLDAAEAER 421 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 W +HR L ++ ++ LS + D E ++ ALY+Y++ + P Sbjct: 422 WEQHRSDRLFEGSAGARTVDILFGEIDQLSEQA--DTRGEEILGALYDYVEMIAP 474 >gi|85711607|ref|ZP_01042664.1| Exonuclease I [Idiomarina baltica OS145] gi|85694467|gb|EAQ32408.1| Exonuclease I [Idiomarina baltica OS145] Length = 486 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 201/476 (42%), Positives = 283/476 (59%), Gaps = 10/476 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F +DYET+G +DRPAQFAG+R ++ + + +P D+LPDPEAV IT Sbjct: 11 QPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLIT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EA F++ I Q S PNT IIGYNNIRFDD +R++ YRNFYD Y + Sbjct: 71 GITPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYDPYAHT 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDL+DV+RA YA P+GI WP +DG + +L+ L AN I+H AHDA +DV Sbjct: 131 WQNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDAMSDV 190 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+A+ L+ EK+PKL+++ +R+KN L LI+ Q + PLVHVSG++GA + + Sbjct: 191 RATIAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADNFFVSAVL 250 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD--ELKGLVPVPIKEVHLNK 299 P+ +H + +++I +L + F D + QL LF S E G ++ LN+ Sbjct: 251 PIGFHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGATQITLNR 310 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN---KPYTSSSQDV 356 CP L P+ E +R ID E L + ++ RDR AI++ + DV Sbjct: 311 CPFLAPLATLTAEAQQRTQIDLATLRERTRWLAENSDFRDRIMAIFDSALEHGEQPPLDV 370 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D +LYDGFF D+Q + I PEQL+ + L D RLPEL FRYRARN+P TL + E Sbjct: 371 DQRLYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYPATLDQSE 430 Query: 417 KQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 Q W + ++ LT I E+ KL+ L+ +Y+ ++ + L+ +LY+Y Q + Sbjct: 431 LQRWQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSLYDYAQGL 486 >gi|238898974|ref|YP_002924656.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466734|gb|ACQ68508.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 490 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 240/465 (51%), Positives = 319/465 (68%), Gaps = 2/465 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYETFG+ LDRPAQFAG+R D ++ +E V +C PA DYLPDPEAV ITGI Sbjct: 6 TFYIYDYETFGQHPGLDRPAQFAGIRTDLEFHPVEDPLVLYCSPAQDYLPDPEAVMITGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQKAL +GV EA F+ +IH+ S PNTCI+GYNNIRFDD +SR+IFYRNFYD Y +SW Sbjct: 66 TPQKALSEGVNEARFAHQIHRVLSQPNTCILGYNNIRFDDEFSRHIFYRNFYDPYAYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD+ RA YA P+GI WP + G SFKL+ L AN I+H AHDA +DVYA Sbjct: 126 NGNSRWDLLDLTRACYALRPEGIIWPKNEQGLPSFKLEHLTKANSIKHTQAHDALSDVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+AL L++ +P+LF Y Y +R+K+++ LI I +M PLVHVSGMF + +T+ I P+ Sbjct: 186 TMALAKLLKSAQPRLFHYFYAHRSKHKINTLIHIGDMAPLVHVSGMFSPEKGHTSWILPI 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPI 302 AWHP +++VI C+L+GD+ L + L +RL+T D+L VP+K VH+NKCPI Sbjct: 246 AWHPDNQNAVIVCDLAGDITPLLSLKADMLRERLYTPRDQLGSECAQVPLKLVHINKCPI 305 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361 L P +E+ +R GID + CL+NL LLR+ ++R++ AI++ + +VD+QLY Sbjct: 306 LAPAKTLSRENAQRLGIDQQHCLKNLELLRRYPDIREKMVAIFDGQKPFPKVNNVDAQLY 365 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 DGFF D DR + I +T PE L TL + F D RL LFFR+RARN+P TLSEK++Q W Sbjct: 366 DGFFNDFDRAEISTIQKTLPENLPTLKIVFQDPRLETLFFRFRARNYPETLSEKDQQRWK 425 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 H +L+ I+EY KL+ + EY+ + K+ LI+ L +Y Sbjct: 426 AHFNTVLSPGIIKEYLLKLKEMLLEYEDNPEKQTLIHLLIQYANQ 470 >gi|251792518|ref|YP_003007244.1| exonuclease I [Aggregatibacter aphrophilus NJ8700] gi|247533911|gb|ACS97157.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus NJ8700] Length = 464 Score = 356 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 207/460 (45%), Positives = 299/460 (65%), Gaps = 4/460 (0%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72 FG + A DRPAQF G+R D + I + V +CK +DYLP PEAV +TGITPQ+ G Sbjct: 6 FGVNPATDRPAQFGGIRTDANFNIIGESVVLYCKQTNDYLPAPEAVLVTGITPQECNEKG 65 Query: 73 VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132 + E +F+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW NGNSRWDLL Sbjct: 66 LPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLL 125 Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192 D++RA YA PDG++WP D+G SF+L+ L ANGIEH NAHDA +DVYAT+ + LI+ Sbjct: 126 DLVRACYALRPDGVEWPLDDEGMPSFRLEKLTEANGIEHTNAHDAMSDVYATIEMAKLIK 185 Query: 193 EKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDS 252 +K+PKLF+Y ++ R K ++ KLI+ MTPLVHVSGM G R NT LIAP+AWHP K++ Sbjct: 186 QKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPLAWHPTNKNA 245 Query: 253 VIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPILMPIDYCK 310 VI C+L+ ++ + +L + L+T + L G++ VP+K +H+NKCPI+ P Sbjct: 246 VIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLLVPLKLIHINKCPIVAPEKTLL 305 Query: 311 KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDGFFADVD 369 ++ ER GID + C +N L ++R + I+ + +S +V+++LY+GFF+D D Sbjct: 306 SQNAERLGIDRELCAQNQQRLLASKDIRQKVMDIFQQDREFEASDNVETELYNGFFSDAD 365 Query: 370 RQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLT 429 + M + PE+L+ NL F D R+P+L F YRAR+F TL+ E+ W ++ +K L Sbjct: 366 KNNMAILRTLEPEKLAEHNLRFQDPRIPQLLFHYRARHFYRTLNRAEQIKWQKYCRKKL- 424 Query: 430 RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 + I ++ LQ L+ + + +E L+ +YEY +I Sbjct: 425 DAEILRFEQSLQELAAQNEHNEENLTLLQKVYEYGNKIIS 464 >gi|161484692|ref|NP_779012.2| exonuclease I [Xylella fastidiosa Temecula1] gi|182681388|ref|YP_001829548.1| exonuclease I [Xylella fastidiosa M23] gi|182631498|gb|ACB92274.1| Exodeoxyribonuclease I [Xylella fastidiosa M23] gi|307579833|gb|ADN63802.1| exonuclease I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 478 Score = 356 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 181/474 (38%), Positives = 264/474 (55%), Gaps = 7/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I Sbjct: 1 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y Sbjct: 61 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D Sbjct: 121 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A + Sbjct: 181 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P L+ ++ + F R G+D LR +++ D D+ Sbjct: 301 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFSHTYNTANDADAS 360 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF + DR+++ ++ ++P+ L T D RL EL FRYRARNFP TLS E+ Sbjct: 361 LYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 420 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W +R++ LT ++Y ++ L + D K+ L++ L + + Sbjct: 421 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 474 >gi|121607268|ref|YP_995075.1| exonuclease I [Verminephrobacter eiseniae EF01-2] gi|121551908|gb|ABM56057.1| Exodeoxyribonuclease I subunit C [Verminephrobacter eiseniae EF01-2] Length = 481 Score = 356 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 179/481 (37%), Positives = 266/481 (55%), Gaps = 15/481 (3%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + F+ +DYETFG D DRPAQFA +R D + I + C+PA+DYLPDP + +TG Sbjct: 4 HTFLWHDYETFGTDTRCDRPAQFAAIRTDAELHAIGEPLMLHCQPANDYLPDPASCLLTG 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ G+ E +F+ RI + P T +GYN +RFDD +R +F+RN D Y W Sbjct: 64 ITPQHCCAHGLPEHQFAARIEAELARPGTIGVGYNTLRFDDEITRFMFWRNLIDPYAREW 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD-GATSFKLQDLALANGIEHVNAHDAKADV 181 N RWDLLDV+R YA PDGI WP +D A SF+L+DL ANG+ H AHDA +DV Sbjct: 124 KNQCGRWDLLDVVRMTYALRPDGIHWPRHEDGAAPSFRLEDLCRANGLLHEAAHDALSDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRSNT 237 AT+AL LIR+ LF++ K+++ + + P +HVSGMF A R Sbjct: 184 RATIALARLIRQHNRPLFDFALGLHKKDRVAAELRLSGGAGTARPFLHVSGMFPAERGCL 243 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296 A++ P+A HP K+ +I +L+ D L ++ R+FT D L +G+ +P+K +H Sbjct: 244 AVMWPLAGHPVNKNELIAWDLAHDPAALATLGVDEMRLRMFTRTDALPEGVTRLPVKTIH 303 Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 LN+ P+++ ++ RWGID + ++ R ++ + A++ +P + Sbjct: 304 LNRSPMVVGNVNTLTPALARRWGIDLAQAAQHAQAARALPDMGRVWAAVFARPSEPAPD- 362 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD LY GF D DR+++D + +A + F D RL ELF+RYRARNFP TL+ + Sbjct: 363 VDQDLYCGFVGDRDRRLLDDLRASAAGMNGKARVHFDDPRLVELFWRYRARNFPATLAPE 422 Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 E W H L + ++ ++ LS DE +G++ ALY+Y + + P+ Sbjct: 423 EAGRWQAHCAARLFHGAGGARTVGQFHARIDELSE--TADERGQGILGALYDYAEQIAPE 480 Query: 471 E 471 Sbjct: 481 H 481 >gi|28056789|gb|AAO28661.1| exodeoxyribonuclease I [Xylella fastidiosa Temecula1] Length = 494 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 181/474 (38%), Positives = 264/474 (55%), Gaps = 7/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I Sbjct: 17 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 76 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y Sbjct: 77 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D Sbjct: 137 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 196 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A + Sbjct: 197 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 256 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 316 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P L+ ++ + F R G+D LR +++ D D+ Sbjct: 317 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFSHTYNTANDADAS 376 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF + DR+++ ++ ++P+ L T D RL EL FRYRARNFP TLS E+ Sbjct: 377 LYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 436 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W +R++ LT ++Y ++ L + D K+ L++ L + + Sbjct: 437 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 490 >gi|33152477|ref|NP_873830.1| exonuclease I [Haemophilus ducreyi 35000HP] gi|33148700|gb|AAP96219.1| exonuclease I [Haemophilus ducreyi 35000HP] Length = 513 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 210/467 (44%), Positives = 292/467 (62%), Gaps = 4/467 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F YDYE+FG + A DRPAQFAG+R DR++ I +F+CK +DYLP EAV +TGI Sbjct: 6 TFFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQTNDYLPSAEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 PQ G+ E EF++RIH FS PNTCIIGYNNIR+DD +R F+RNFYD Y + W Sbjct: 66 APQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNNIRYDDEMTRYTFFRNFYDPYEYCWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P GI+WP + SFKL+ L AN I H NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPSGIEWPKNEKDEPSFKLEHLTKANAIAHQNAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ + LI++K+ KLF++ ++ R+K L KLID +TPLVHVSGM G R NTALI P+ Sbjct: 186 TIEIAKLIKQKQRKLFDFFFENRSKKALEKLIDPAELTPLVHVSGMLGNYRGNTALIVPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 AWHP +++V+ C+LS D++ + + L +RL+T D L + PVP+K VHLNKCPI Sbjct: 246 AWHPTNQNAVVVCDLSSDIQGLLNDTAEVLKQRLYTKRDALAEHESPVPLKLVHLNKCPI 305 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQL 360 L P E+ R ID +CL NL L+ Q + ++ + S +V++ L Sbjct: 306 LAPAKTLLAENAMRLAIDRSQCLLNLAKLQAQKAVVREKVIEIFNDERIFAPSNNVETTL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YD FF++ D+ + + PEQL+ L F+D+R+ L F YRAR+FP+TL+ E+ W Sbjct: 366 YDSFFSNGDKNNLAILRTLKPEQLAEHGLKFADKRVEPLLFHYRARHFPNTLTRAEQIKW 425 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ + + ++ E++ ++ +L Y K L+ L Y + Sbjct: 426 QKYCHQQI-DAKTEQFSQEIANLFERYADHADKVKLLEDLTAYATQL 471 >gi|71275767|ref|ZP_00652051.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon] gi|71902145|ref|ZP_00684172.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] gi|170730127|ref|YP_001775560.1| exonuclease I [Xylella fastidiosa M12] gi|71163345|gb|EAO13063.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon] gi|71728093|gb|EAO30295.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] gi|167964920|gb|ACA11930.1| Exodeoxyribonuclease I [Xylella fastidiosa M12] Length = 488 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 178/474 (37%), Positives = 262/474 (55%), Gaps = 7/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I Sbjct: 11 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A R+G+ E I + P+TC +GYN +RFDD + R +R+FYD Y Sbjct: 71 TGITPQHAQREGISEVAAFAHITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A + Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P L+ ++ + F R G++ LR +++ D D+ Sbjct: 311 VPALIAWNHLRASDFTRLGLNPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 370 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF + DR+++ ++ + + L+T D RL EL FRYRARNFP TLS E+ Sbjct: 371 LYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 430 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W +R++ LT ++Y ++ L + D K+ L++ L + + Sbjct: 431 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 484 >gi|71897974|ref|ZP_00680179.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] gi|71732218|gb|EAO34273.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] Length = 488 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 180/474 (37%), Positives = 263/474 (55%), Gaps = 7/474 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I Sbjct: 11 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y Sbjct: 71 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A + Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P L+ ++ + F R G+D LR +++ D D+ Sbjct: 311 VPALIAWNHLRASDFTRLGLDPSMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 370 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF + DR+++ ++ + + L+T D RL EL FRYRARNFP TLS E+ Sbjct: 371 LYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 430 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W +R++ LT ++Y ++ L + D K+ L++ L + + Sbjct: 431 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 484 >gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501] gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501] Length = 477 Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 185/450 (41%), Positives = 271/450 (60%), Gaps = 11/450 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT YD+ET G + DRP Q AG+R + E+I +C+P DD LP P A + Sbjct: 1 MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP + G+ EA+F +H+ S P TC GYN++RFDD +R YRNFYD Y Sbjct: 61 TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+D++R YA P+GI WP DG + KL+ L+ ANG+EH+NAHDA +D Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPED-DGRVTLKLERLSAANGLEHLNAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT++L LIRE++P+L+EYL++ R K+ + + + + + PLVHVSG F A+R +++ Sbjct: 180 VRATISLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHPR ++++I C+L ++R + L +RL+T DEL +G +PVP+K VH+NK Sbjct: 238 LPLAWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358 CP+L P+ ++ +R +D C E LR+Q + + +Y + D + Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 QLYDGF + DR++ DRI AP +L+ F D RL EL FRYRARNFP LS E+ Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAVERV 417 Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQS 442 W ++ L+ + + +++ +Q Sbjct: 418 RWQRFCQQRLSGEIAGAPNTLAQFEADIQQ 447 >gi|254517159|ref|ZP_05129217.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3] gi|219674664|gb|EED31032.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3] Length = 482 Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 186/479 (38%), Positives = 271/479 (56%), Gaps = 13/479 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYETFG D DRPAQFAG+R D I V + KP DY+P P+A IT Sbjct: 4 SETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLIT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL GV EA+F + I F TC +GYN++RFDD +R YRN D Y Sbjct: 64 GITPQAALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +G SRWDL+D++R YA P+G+ WP RDDG SF+L+DL ANG+ AHDA DV Sbjct: 124 YGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALVDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL L++E++P+LF++LY R K ++ L++ + P++HVSGMFGA R+N LI Sbjct: 184 QATIALARLLKERQPRLFQWLYQQRFKQAVKPLLEPMS-QPVLHVSGMFGAQRANLGLIL 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A H + ++ V+ +LS D + DL + +L + LFT++ +L +G +K VH+N+C Sbjct: 243 PLAAHHQNRNEVMCADLSIDADLLTDLPAAELHRLLFTANADLAEGEQRPGLKSVHINRC 302 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-----RDRFKAIYNKPYTSSSQD 355 P+L+P +R +D + C NL LR RD+ +++ + D Sbjct: 303 PVLLPAKMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSVSELSTRAPETD 362 Query: 356 VDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D LY G F DR+ +DRIL +PE L+ + F D RL E+ FRYRARN+P TLS Sbjct: 363 PDRMLYSGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYPQTLSA 422 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +E+ W E R ++ +E ++ + E ++ L + ++ Sbjct: 423 EEQLRWEEFRFNRISEGDGRSLTLEGLNELIEERLASPQLCERDRQVLEELQRWGDSLL 481 >gi|88707066|ref|ZP_01104762.1| exodeoxyribonuclease I [Congregibacter litoralis KT71] gi|88698716|gb|EAQ95839.1| exodeoxyribonuclease I [Congregibacter litoralis KT71] Length = 482 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 195/479 (40%), Positives = 279/479 (58%), Gaps = 13/479 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F +DYETFG D A DRP+QFAG+R D I V + +P DY+P P+A IT Sbjct: 4 SETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLIT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ AL +GVVEA+F I F P TC +GYN++RFDD +R YRN D Y Sbjct: 64 GITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +G SRWDL+DV+R YA P+G+ WP+RDDG SF+L+DL ANG+E AHDA DV Sbjct: 124 YGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDALVDV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL I++K+P+LF++L+ R K ++ L+D P++HVSGMFGA R+N LI Sbjct: 184 KATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLDPM-AQPVLHVSGMFGARRANLGLIL 242 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A H + ++ VI +LS D + DL + +L +RL+TS+ +L +G V IK VH+N+C Sbjct: 243 PLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHINRC 302 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-----RDRFKAIYNKPYTSSSQD 355 P+L+P ER G+D C NL LR RD+ +A+ D Sbjct: 303 PVLLPEKMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAVSELSGREPETD 362 Query: 356 VDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 D LY G F DR+ +DR+L PE L+T + F D RL E+ FRYRARN+P TL++ Sbjct: 363 PDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPETLND 422 Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +E+ W E+R ++ +E+ ++ + + ++ L + ++ Sbjct: 423 EERARWEEYRFARISEGDGRSLNLEDLNGIIEERLIAAQITDRDRHVLEELQRWGDSLL 481 >gi|119505890|ref|ZP_01627954.1| Exonuclease [marine gamma proteobacterium HTCC2080] gi|119458271|gb|EAW39382.1| Exonuclease [marine gamma proteobacterium HTCC2080] Length = 483 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 184/475 (38%), Positives = 264/475 (55%), Gaps = 10/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F +DYET G +V DRP QFAGVR D+ + I V +C+P+ D L P A+ +T Sbjct: 4 SESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+P KAL +G E F +I + F VP TC +GYN++RFDD +R YRNF+ Y Sbjct: 64 GISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + SRWDL+DV RAIYA PDGI WP R+DG SF+L+DL ANGI+H NAHDA ADV Sbjct: 124 FGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALADV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL L+ + +P LF+ LY R K + L++ + P++HVSG FGA R N A++ Sbjct: 184 LATIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLAIVL 243 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+A HP K+ VI +L F D S + + LFT + G+ P+K + +N+ Sbjct: 244 PLAVHPTNKNGVICADLGEAPA-FLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQINRA 302 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-----LRDRFKAIYNKPYTSSSQD 355 P+++P + E +R +D + +L R + IY + D Sbjct: 303 PVVLPTTWVSGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAPRSD 362 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 D+QLY+GF D +++ I + P+ L++ F DRRLPE+FFRYRARNFP +L Sbjct: 363 PDTQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFPESLDPD 422 Query: 416 EKQDWLEHRKKMLT---RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 EK W EH ++ LT E + +L + ++ L +Y + + Sbjct: 423 EKARWREHCRETLTGKAGPDWEGFSKQLNEERAREGLSVMQIAALDDLEQYTREL 477 >gi|297183623|gb|ADI19749.1| hypothetical protein [uncultured gamma proteobacterium EB000_37F04] Length = 480 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 195/474 (41%), Positives = 263/474 (55%), Gaps = 9/474 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET G D DRP QFAG+R D + + + +P +D LP P AV +T Sbjct: 4 SESLYWHDYETSGADPTQDRPWQFAGIRTDAELNIVGKPLTLYAQPTEDRLPHPAAVRVT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A GV EA F RI + PNTC GYN+IRFDD +R +RN D Y Sbjct: 64 GITPQEAYEKGVTEATFISRILAELAKPNTCTAGYNSIRFDDEVTRFTLWRNLRDPYARE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+RA +A SP+G++WP RDDG TSF+L+DL ANGIEH AHDA ADV Sbjct: 124 WQNGNSRWDLLDVVRAFWALSPNGLEWPQRDDGLTSFRLEDLTAANGIEHGAAHDALADV 183 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + +++ +LF LY R+K + LIDI + P+V+VSG+FGA+R N ALI Sbjct: 184 IATIEMAKRLKQSDARLFTTLYANRSKRAVSALIDIPRLKPIVYVSGIFGAARHNLALIV 243 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP K VI +L+G + D +L + LF KG V P+ V LN+ Sbjct: 244 PLAWHPDNKSEVICADLAGSTE-YLDQPVAELRESLFAPASARSKGAVRPPLTAVRLNRA 302 Query: 301 PILMPIDYCKKEHFERWGIDHK-----RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P+L+P D+ E ER G+D + RF+ ++ D Sbjct: 303 PVLLPADWLAGEAAERLGLDGDHHRAHLAALRAARAANEAAFVARFQELWRDRAFPPRTD 362 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 D LYDGF D DR + +IL+ P L+T + PFSD RLPEL FRYRARNFP +LS Sbjct: 363 PDQMLYDGFINDADRALCQQILQQEPATLATQSWPFSDPRLPELLFRYRARNFPDSLSAG 422 Query: 416 EKQDWLEHRKKMLTRSRIEE--YKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 E + W EH + + + L + ++AL ++++ + Sbjct: 423 EGEQWREHCQLQRKEGTFNQATFAQALVEERARADITPATKRALDALEQWVRDL 476 >gi|319944538|ref|ZP_08018809.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599] gi|319742251|gb|EFV94667.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599] Length = 489 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 181/491 (36%), Positives = 259/491 (52%), Gaps = 25/491 (5%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ F +DYETFGRD LDRPAQFAG+R D ++ + +CKPA DYLPDPEA Sbjct: 1 MSETSFFWHDYETFGRDPRLDRPAQFAGIRTDLDLNEVGEPVMLYCKPAPDYLPDPEACL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI PQ+ L G+ E F+ + T +GYN+IRFDD +R++ +R Y Sbjct: 61 LTGILPQECLARGLPEYRFADAVLAELGASGTIGVGYNSIRFDDEVTRHLLWRTLRPPYD 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W NG SRWDLLDV+RA A P+GI+WP DDG SFKL+ L+ ANG+ H AHDA + Sbjct: 121 REWRNGCSRWDLLDVVRATAALRPEGIEWPRHDDGRPSFKLEHLSAANGLAHAQAHDALS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV AT+AL LIR ++P+L+ + R K + I P +HVS M+GA R A+ Sbjct: 181 DVRATIALAALIRNRQPRLWNFCLALRQKQAVLTEIGSD--RPFIHVSAMYGAERGGMAV 238 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298 + P+A HP ++ +I +L D DLD+ Q+ RLF+ ++L +G+ +PI+ + +N Sbjct: 239 VWPLAQHPTNRNELIVWDLIHDPAELADLDAEQIRLRLFSKTEDLPEGMTRLPIRSLAIN 298 Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS--SSQD 355 K PI++ + ERW ID + + R+ T + + D Sbjct: 299 KSPIVIGNLKVLTPAVIERWHIDMETIARHTETARRLTPQLASRMDEVYQRPRPQGPAPD 358 Query: 356 VDSQLYDGFFADVDRQIMDRILRT------------APEQLSTLNLPFSDRRLPELFFRY 403 VD LY GF + DR+ +D + F D RL E+ FRY Sbjct: 359 VDGDLYGGFIGNDDRRRLDDWRERLDATASQAAASPDADHSHIQIPSFEDPRLEEMSFRY 418 Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYK-GDEGKEGLI 457 RAR FP LS +EKQ W+ H L + + + ++L L+ DE + L+ Sbjct: 419 RARQFPDMLSTEEKQRWVAHCHARLHQGAGNAMTLATFAHRLDELNQSLSPDDEHGQRLL 478 Query: 458 NALYEYLQWVI 468 ALY+Y + + Sbjct: 479 EALYDYGEQLA 489 >gi|332993520|gb|AEF03575.1| exodeoxyribonuclease I [Alteromonas sp. SN2] Length = 477 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 187/474 (39%), Positives = 272/474 (57%), Gaps = 9/474 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ YD+ETFG D P QFA +R D + I A+DYLP PEA +TG Sbjct: 4 PSFLWYDFETFGTSGQKDLPCQFAAIRTDLDFNIIGKPINIMSAIANDYLPHPEACLVTG 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITPQ+ LRDG EA+F++RI+Q S PNTC +G+N+IRFDD +R +FYRNFYD Y W Sbjct: 64 ITPQQTLRDGSNEADFAKRIYQEMSTPNTCSLGFNSIRFDDEVARFLFYRNFYDPYSREW 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGNSRWD++D+ RA YA PDGI WP+R+DG SFKL+ L N I H NAHDA +DV+ Sbjct: 124 RNGNSRWDIIDLARACYALRPDGINWPTREDGTPSFKLEHLTKENDISHENAHDALSDVH 183 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+AL LI+EK+P+LFEY Y R+K+ + D+ + L+H+S AS+ I P Sbjct: 184 ATIALAKLIKEKQPRLFEYAYSLRSKHNVANQFDLTKPSVLLHISAKLPASQGCCTWIMP 243 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG--LVPVPIKEVHLNKC 300 +A HP +++I +LS + + ++ +L+ ++ + +K +H+N+ Sbjct: 244 IAKHPTNSNAIIAVDLSKPIDSLLNDSPEEIKAKLYARYEPGSDANSLRPGLKLIHINRS 303 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P + +++ R G+D CLEN +L Q+ +L + +Y QD+D L Sbjct: 304 PFVTTAKAMTEDNAHRLGLDRDTCLENYRILAQERDLGMKLSNVYENDTDDKEQDIDHAL 363 Query: 361 YDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Y G F + DR D++L ++PEQL L L L FRYRARNFP TL+ E Sbjct: 364 YSGGFLSTEDRHWCDKVLASSPEQLGALAEETQHVGLRALLFRYRARNFPSTLTYDETLK 423 Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W HR+ LT +E Y + L+ L+ E+ + K+ ++ AL++Y + + Sbjct: 424 WQRHRQARLTDPTSSASITLEHYMSTLERLAHEHVDNPEKQAILRALFQYAENL 477 >gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1] gi|300075708|gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 181/428 (42%), Positives = 251/428 (58%), Gaps = 4/428 (0%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+N F+ +DYETFG DRPAQFA VR D + +I + + +CKPA DYLPDP + Sbjct: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ITGITPQ L G+ E EF+ RI Q P T +GYN IRFDD +R +F+RN D Y Sbjct: 61 ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W NG RWDLLDV+R YA P GIQWP +DDG+ SFKL+ L+ ANG+ H AHDA + Sbjct: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV AT+AL LIR+ P+LF++ K++ I + P +H SGMF + AL Sbjct: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298 + P+ HP K+ VI +L D LD+ + +RLF+ D+L +G+ +P+K +HLN Sbjct: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 K P+++ + E ID + L + +L + +Y + DVD Sbjct: 301 KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQ-RESEGPADVD 359 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 LY GF + DR+ ++++ +P+ L+T ++ F D RL E+ FRYRAR+FP TLS +E Sbjct: 360 EDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEA 419 Query: 418 QDWLEHRK 425 Q W EHR Sbjct: 420 QHWEEHRA 427 >gi|145636088|ref|ZP_01791758.1| exonuclease I [Haemophilus influenzae PittHH] gi|145270610|gb|EDK10543.1| exonuclease I [Haemophilus influenzae PittHH] Length = 440 Score = 346 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 209/428 (48%), Positives = 284/428 (66%), Gaps = 3/428 (0%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+ Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301 AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360 IL P E R GID + CL+NL LR ++R++ I+N+ +S+ +V+++L Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425 Query: 421 LEHRKKML 428 ++R+ L Sbjct: 426 KKYRQNKL 433 >gi|254524666|ref|ZP_05136721.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14] gi|219722257|gb|EED40782.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14] Length = 479 Score = 346 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 195/475 (41%), Positives = 295/475 (62%), Gaps = 8/475 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ YD ETFG+D R +Q+A +R D +IE+ FF +PADD LP P A + Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIETPVSFFVRPADDLLPSPMATLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQ+A+ +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y Sbjct: 61 TGITPQQAMAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFIRYGLFRNFHDPYER 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGNSRWDLLD++R + A PDGIQWP R+DGATSFKL+ LA AN + +AH+A +D Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ + L ++ +P+L+EY R+K + L+DI + P++HVS + ASR A + Sbjct: 181 VRATIGMARLFKQSQPRLWEYALKLRDKRFVGGLLDIAALKPVLHVSMRYPASRLCAAPV 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+A HP + VI +L GD+ +L + +A+RL+ EL +G+ VP+KEVH+NK Sbjct: 241 LPLAVHPTINNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHMNK 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358 P L+ ++ + + ER G+D + LR L ++ + +YN+P T+++ DVD+ Sbjct: 301 VPALIAWNHLRADDHERLGLDVAAIEAKVERLRPFAAQLAEKARQVYNQPRTATAADVDA 360 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 LYDGF + D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPGSLAPAERQ 420 Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 W ++R++ L + +Y+ +L +L+ + D ++ L+ +L ++ Q + Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAADAPDDARRQALLQSLRDWGQHL 475 >gi|269962181|ref|ZP_06176534.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3] gi|269833012|gb|EEZ87118.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3] Length = 427 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 210/428 (49%), Positives = 291/428 (67%), Gaps = 2/428 (0%) Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 +C+P DYLP PEA ITGITPQKA+++G+ E EF +IH S PNT +GYN+IRFD Sbjct: 1 MYCRPPADYLPSPEAALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFD 60 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 D +R YRNF D Y WSW NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ Sbjct: 61 DEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEH 120 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 L++ANGIEH NAHDA ADV AT+ + ++ +PKLF+Y Y RNK +L +L+DI NMTP Sbjct: 121 LSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTP 180 Query: 223 LVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD 282 L+HVSGM G T+ I PVAWHP ++VI +L+ D + +L + +L +RL+T + Sbjct: 181 LMHVSGMMGRECQYTSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRE 240 Query: 283 ELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342 EL L+PVP+K VHLNKCPIL P E+ E GID ++CL NL LLRQ +R++ Sbjct: 241 ELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLI 300 Query: 343 AIYN-KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 ++++ + S DVD+QLYDGFF+ DR MD I T P L+ L++ F D+R+ L F Sbjct: 301 SLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLF 360 Query: 402 RYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461 RYRAR++ TL E+E++ W +H ++ + S+IEEY L++L E++ DE K ++ ++Y Sbjct: 361 RYRARHYAGTLDEQEQRRWAQHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVY 419 Query: 462 EYLQWVIP 469 Y++ + Sbjct: 420 RYVESLAS 427 >gi|254482823|ref|ZP_05096060.1| Exonuclease C-terminal domain family protein [marine gamma proteobacterium HTCC2148] gi|214036904|gb|EEB77574.1| Exonuclease C-terminal domain family protein [marine gamma proteobacterium HTCC2148] Length = 460 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 190/458 (41%), Positives = 272/458 (59%), Gaps = 13/458 (2%) Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 QFAG+R D I V + +PA+D+LP P+A +TGITPQKAL +G+ EAEF R IH Sbjct: 2 QFAGLRTDADLNPIGEPLVIYSRPANDFLPHPQACLVTGITPQKALAEGLPEAEFIRLIH 61 Query: 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143 + P TC +GYN++RFDD SR YRNFYD Y W NGNSRWD++D++RA YA P Sbjct: 62 AELAAPGTCGVGYNSLRFDDEVSRYTLYRNFYDPYGREWQNGNSRWDIIDMVRACYALRP 121 Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203 +GI+WP R+DG SF+L+ L ANGI H AHDA +DV+AT+A+ LI+ K+P+L++Y+ Sbjct: 122 EGIEWPLREDGQPSFRLEALTAANGIAHEAAHDALSDVHATIAMARLIKTKQPRLYDYVL 181 Query: 204 DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263 +R+K + L+D+ M P++HVSGMFGA R N LI P+A HP K+ VI +L D Sbjct: 182 KHRDKRSVSTLLDLDAMKPVLHVSGMFGAVRHNIGLIVPLAMHPTNKNEVICYDLMTDPA 241 Query: 264 VFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322 + + L+T DEL +G +K VH+NKCPIL+ E R GI + Sbjct: 242 MLMQQSPEETRTLLYTRADELPEGTERPGLKSVHINKCPILVTAKMADPETAARLGISGE 301 Query: 323 RCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADV-DRQIMDRI 376 +C +L LR+ + +AI++ D D LY G F D+++MD++ Sbjct: 302 QCRAHLAALREYRGRDSQGFVQKIQAIFSGRQFDEITDPDRMLYSGGFFGATDKRLMDQV 361 Query: 377 LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR---- 432 ++ E+L++ PF D RL E+ FRYRARN+P TLS +E W E+R + LT Sbjct: 362 RESSAEELASATFPFEDGRLTEMLFRYRARNYPQTLSGEELALWEEYRFQRLTEPDAGSS 421 Query: 433 --IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +EEY+ +Q+L + + L+ L +Y ++ Sbjct: 422 ICMEEYQELIQTLVTSGELTLPQCELMEQLLDYSDTLL 459 >gi|87121491|ref|ZP_01077380.1| exodeoxyribonuclease I [Marinomonas sp. MED121] gi|86163334|gb|EAQ64610.1| exodeoxyribonuclease I [Marinomonas sp. MED121] Length = 457 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 175/454 (38%), Positives = 266/454 (58%), Gaps = 8/454 (1%) Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 QFAG+R D ++ +I + +C+ A+D LP P+A +TGI+PQ A R+G E EF I Sbjct: 2 QFAGIRTDLEFNQIGEPIMIYCQLAEDVLPHPDACLLTGISPQDANREGYPETEFMAMIE 61 Query: 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143 + F+ P TC +GYN+IRFDD R FYRNF D Y W N SRWD++D++R YA P Sbjct: 62 KEFATPGTCALGYNSIRFDDEVVRFGFYRNFIDPYAREWQNACSRWDIIDLVRMCYAIRP 121 Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203 +GI WP +DG S KL+DL AN I H AHDA +DVY T+ + LI++K+PKL++Y + Sbjct: 122 EGINWPKNEDGQVSLKLEDLTKANDIAHEQAHDALSDVYGTIEMAKLIKQKQPKLYDYYF 181 Query: 204 DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263 R K +L+K ID M P +HVSGMFGA ++ A +AP+A HP K+ VI +L D + Sbjct: 182 KMREKGELQKFIDPYRMKPFLHVSGMFGAIKNYAAFVAPIAPHPTNKNGVILFDLMQDAQ 241 Query: 264 VFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKE-HFERWGIDHK 322 DL ++ R+F++ + L +P+K +H N+ P + P + K R +D + Sbjct: 242 PLIDLSVDEIRHRVFSTKEALGDTPRLPLKTLHYNRSPAVAPATFLKDTSVVSRLNLDGE 301 Query: 323 RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFFADVDRQIMDRILRTAP 381 C +NL +L+ L ++ ++ + + +D D LY GFF+ D+ M+ I +T Sbjct: 302 ICRQNLAILKSYPELANKMSQVFMQSHEKIDKDPDVMLYSGGFFSREDKARMEEIRQTPL 361 Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR------IEE 435 LS L+L F DRRLPE+ RY RN+P L+ ++Q+W E+R+ L ++ Sbjct: 362 NALSELSLSFDDRRLPEMLMRYIGRNYPEQLTSTQRQEWEEYRQAKLLDPSAGASICMDA 421 Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 + N+L L+ E + + K+ ++ L +Y Q + P Sbjct: 422 FFNRLNELAQETELSKSKQIMLQDLADYAQSIYP 455 >gi|327394409|dbj|BAK11831.1| exodeoxyribonuclease I SbcB [Pantoea ananatis AJ13355] Length = 412 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 215/412 (52%), Positives = 286/412 (69%), Gaps = 1/412 (0%) Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ITGITPQ A GV EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y Sbjct: 1 MITGITPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPY 60 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 WSW NGNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+ H NAHDA Sbjct: 61 GWSWQNGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAM 120 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 +DVYATLA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ Sbjct: 121 SDVYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTS 180 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + P+AWHP ++++I +L+GDM LD+ L +RL+T EL +P+K VH+N Sbjct: 181 WVVPLAWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHIN 240 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVD 357 KCP+L P + + E R GID K CL+NL LRQ +R++ AI+ + S DVD Sbjct: 241 KCPVLAPANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSDDVD 300 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 +QLYDGFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+ Sbjct: 301 TQLYDGFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAEQ 360 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 Q WL+HR+++L +++ + +L+SL+ ++ D+ K + ALY Y Q ++ Sbjct: 361 QRWLQHRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELVS 412 >gi|148927622|ref|ZP_01811085.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1] gi|147887031|gb|EDK72536.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1] Length = 476 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 163/472 (34%), Positives = 255/472 (54%), Gaps = 6/472 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F YD ET G D DR QFAG R + I + DD LP P+AV + Sbjct: 5 MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVMV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITPQK +G+ EAEF + H P T +G+NNIRFDD + R +RNF+D Y W Sbjct: 65 TGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHDPYEW 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +W +G SRWDLLDV+R A P GI WP + +L+ L N +EH AHDA +D Sbjct: 125 AWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQAHDALSD 184 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYA +A+ ++R+K+PKLFEYL+ R+K + +L++ P+V+ SG + A+ T+++ Sbjct: 185 VYALIAITRMVRDKQPKLFEYLFSIRDKKAVTQLVNPYKPKPIVYTSGRYDANYHKTSVV 244 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG--LVPVPIKEVHLN 298 P+A R + +L + + F DL ++ KRL +E K V +P+KEV N Sbjct: 245 FPIAEGSR-PGTTFVYDLRHNPQQFTDLSPEEIKKRLLAKWEERKDPNFVAIPVKEVTHN 303 Query: 299 KCPILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P + P+ ++ +E + ++ ++L +L++ +L + K Y S D + Sbjct: 304 RAPAVAPLGVLEQGGGWENIQLTNETVRKHLEVLQRSPDLVTKIKTAYESRSFPKSSDAE 363 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 +QLYD F D D+ + + + +L+ + F+D+RLP L RY+ARNFP +LSE+E+ Sbjct: 364 AQLYDSFLNDKDKTHIQAVRNASERELADFHPEFNDKRLPPLLIRYKARNFPRSLSEEEQ 423 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +W +R L + Y + + + E + L+ L + + ++P Sbjct: 424 VEWEAYRATRLQAE-LPGYMGAIARI-AKTDPSENTQFLLQELQLWAESIVP 473 >gi|302339540|ref|YP_003804746.1| exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293] gi|301636725|gb|ADK82152.1| Exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293] Length = 484 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 172/472 (36%), Positives = 257/472 (54%), Gaps = 8/472 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M YD ETFG LDR AQFAG+R D ++ V +CK DY+PDP+A I Sbjct: 1 MARSIYWYDLETFGTHPRLDRIAQFAGLRTDEALNELGEPLVLYCKITQDYVPDPKACLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP++ LR G+ E F RI++ F P +C+ G+N+I FDD + R YRN D +R Sbjct: 61 TGITPEETLRKGLSERRFIERINEEFMQPGSCVAGFNSIAFDDEFIRATLYRNLMDPFRR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDLLDV+RA P GI WP ++G +F+L+ L AN + H NAHDA +D Sbjct: 121 EWAGGNSRWDLLDVLRAARDLRPQGITWPEGENGRPTFRLEKLTEANALPHQNAHDALSD 180 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+A+ L+REK+PK+F YLY R K+ R+LID+ P +H S M T+++ Sbjct: 181 VRATIAMARLLREKQPKIFSYLYRGRIKDHARQLIDLHKRRPFLHTSAMLSNEYGYTSIL 240 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299 APVA HP +++++ +L D + +L + +F +EL + + +H+N+ Sbjct: 241 APVAPHPANQNAILCFDLRQDPEPLIERSVDELRRLIFAPSEELSLEESRIRLIPIHINR 300 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P+L P+ + +R G+D C + L + + L + ++ + +D + + Sbjct: 301 SPVLAPLSTLDPDTAKRLGLDVTLCGKRAAKLAEASLLTQKIMEVFRRDEAEIRRDPELE 360 Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 +Y GFF+D DRQ M+R +PE + F DRRLPEL +R+ RN L E E++ Sbjct: 361 IYSGGFFSDADRQRMERFRELSPEAMLKRRGDFYDRRLPELAWRFVCRNHSEILDENERK 420 Query: 419 DWLEHRKKMLTRSR---IEE---YKNKLQSLSGEYKGDEGKEGLINALYEYL 464 W L I + +K K++ LSG+ G + +I L E+ Sbjct: 421 KWKSFCAGRLLFPPERLINDFAFFKRKVKELSGDTNLPAGDKKIIKKLAEWA 472 >gi|269468419|gb|EEZ80084.1| exonuclease I [uncultured SUP05 cluster bacterium] Length = 471 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 174/475 (36%), Positives = 268/475 (56%), Gaps = 16/475 (3%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F YDYETFG DR +QFAG+R D ++ +F+CKP D LP PEA +T Sbjct: 1 MKTFYWYDYETFGISPKTDRISQFAGIRTDENLNILDE-HMFYCKPTHDCLPAPEACAVT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+PQ + GV+E EF ++I+ F+ PNTCI+GYN+IRFDD ++R YRNF D Y W Sbjct: 60 GISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYRNFIDPYAWH 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W +GN+RWD+LDV+R YA D ++W ++G FKL L+LANGIEH NAHDA AD Sbjct: 120 WKDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIEHANAHDALAD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ + +I+E +P+LF+Y + R K + I + P++H SGM+ A+ S T L Sbjct: 180 VRATIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMYPATLSCTRLA 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 +A+HP Y D I NL D + +LD +L +FT EL G+ + IK++ NK Sbjct: 238 VALAYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKRLEIKDLIFNK 297 Query: 300 CPILMPIDYC-KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDV 356 P+ +P Y + E+ ID ++ L ++ + ++ N + + DV Sbjct: 298 SPMFVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRNDKERAPTVDV 357 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D LYDGF + D++I +++ R + ++L + F D++L L ++ARN+P++L+E E Sbjct: 358 DQALYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKARNYPNSLTEDE 417 Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 +DW E + + +++Y ++ + ++ KE L L Y + Sbjct: 418 AEDWFETVQGRIQAGENGYTSLDDYYQRITLMQKQH---PEKETLWKQLESYAES 469 >gi|145641395|ref|ZP_01796974.1| exodeoxyribonuclease I [Haemophilus influenzae R3021] gi|145273938|gb|EDK13805.1| exodeoxyribonuclease I [Haemophilus influenzae 22.4-21] Length = 430 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 196/430 (45%), Positives = 278/430 (64%), Gaps = 4/430 (0%) Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 +F+CK +DYLP PEAV ITGI PQ+ G+ E EF+ +I FS PNTC++GYNNIR+ Sbjct: 1 MFYCKQTNDYLPAPEAVMITGIMPQECNEKGLSEPEFAAKILAEFSQPNTCVMGYNNIRY 60 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 DD +R FYRNF D Y +SW NGNSRWDLLD++RA YA P+GI W DDG SF+L+ Sbjct: 61 DDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLE 120 Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 L ANGIEH NAHDA ADVYAT+A+ LI+EK+PKLF+Y ++ R K ++ KL+D M Sbjct: 121 KLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGVMA 180 Query: 222 PLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSH 281 PLVHVSGM G R N +AP+AWHP ++++I C+L+GD+ + +L L+T Sbjct: 181 PLVHVSGMLGNYRGNCTWVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRANLYTKK 240 Query: 282 DELKGLV--PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339 EL+ PVP+K VH+NKCPIL P E R GID + CL+NL LR ++R+ Sbjct: 241 SELEERSVPPVPLKLVHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIRE 300 Query: 340 RFKAIY-NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398 + I+ + +S+ +V+++LY+GFF++ D+ M + E+L+ L F D+R+PE Sbjct: 301 KVTDIFNEERQFASNDNVETELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPE 360 Query: 399 LFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN 458 L F YRAR+F TL+ E+ W ++R+ L ++++ LQ L+ E+ + K L+ Sbjct: 361 LLFHYRARHFYKTLTRAEQIKWQKYRQNKL-EKSAVDFESSLQRLAEEHSDNPEKLSLLQ 419 Query: 459 ALYEYLQWVI 468 +YEY ++ Sbjct: 420 QVYEYGTKLL 429 >gi|262276726|ref|ZP_06054519.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114] gi|262223829|gb|EEY74288.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114] Length = 473 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 99/481 (20%), Positives = 190/481 (39%), Gaps = 33/481 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++V YD+ET GR D+ Q + V+ ++ ++ E C +P+P A+ + Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEAR-CSLKPGTVPEPGALLVNKT 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 TP + + + + + F + IGYN++ FD+ + R F+++ D Y + Sbjct: 61 TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYL-TN 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGN R D+L ++R+ + + P+ ++ P + G FKL +A NGI H NAHDA DV Sbjct: 120 TNGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVL 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + +I +K P +++ +K + ++ + + + ++ +++ Sbjct: 180 ATMGMAKIIADKAPSVWKASLMTMSKQDVGNIVQKEK----LFCVNEYFYGKARPFVVSF 235 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 V HP Y +L D + +D L + S P ++ V NK PI Sbjct: 236 VCNHPVYNWPQ-CFDLKNDPEDYFKMDMSTLKDAMKKS--------PKLLRSVKDNKHPI 286 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS---- 358 +M +Y I + E ++Q + AI + Sbjct: 287 IMNPNYATNFDT-YKQIGISKLNERAEKIKQNEEFGKKVSAILQEEAQEKQDLDSQLDVQ 345 Query: 359 ----QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 GF D + + + + + D R R P + + Sbjct: 346 AEESIYSGGFPDDKTKMALKEFQKAEWKDRLVIADKMKDERYNYFAKRLMYEEAPDIMPK 405 Query: 415 KEKQDWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKG--DEGKEGLINALYEYLQW 466 + K + + I + N+L SL +Y+ DE + + N + +L+ Sbjct: 406 DLYNEIHRGIAKRILSTNDEKWNTIPKAYNELDSLRAKYEEDGDEERLSITNDINNFLEE 465 Query: 467 V 467 + Sbjct: 466 I 466 >gi|330813552|ref|YP_004357791.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063] gi|327486647|gb|AEA81052.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063] Length = 473 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 105/481 (21%), Positives = 199/481 (41%), Gaps = 33/481 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ YD+ET GR D+ Q V V+ ++++++ E C +P+P A+ + Sbjct: 2 NYAFYDFETTGRSGTWDQIIQVGAVLVNAEFQELDRFEA-KCGLRPGLVPEPGALLVNKT 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 TP + + ++ Q F IGYN+I FD+ + R ++ D Y + Sbjct: 61 TPDMLRKTNLSHYGLVDQMLQTFKKWTPAIFIGYNSIGFDEEFLRKTLFKTLNDPYL-TQ 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGN R D+L + R + + PD I+ P+ D G FKL LA NGIEH NAHDA DV Sbjct: 120 FNGNKRGDILGLARTAHLYYPDCIKTPTSDKGNPVFKLDQLAPMNGIEHGNAHDAIGDVL 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + +I +K P +++ +K ++ ++ + + + ++ ++ Sbjct: 180 ATIGIAKIISDKAPAVWKASLMTTSKAEVNTIVQNEK----LFCFNEYFYGKARPYVVTF 235 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + +HP+Y +L D + ++ L K + S P I+ V NK PI Sbjct: 236 LGFHPKYSWPQ-CFDLKEDPNTYFNMSMEDLKKAMKKS--------PKIIRSVKNNKHPI 286 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-------D 355 +M + + + + +E L++ +++ I + Sbjct: 287 IMNPKFGEN-FEGYKQLGMAKLIERAELIKNNEEFKNKVARILEEEAQEKEDLDSQLDVQ 345 Query: 356 VDSQLYDGFFADVDRQ-IMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + +Y G FA + M ++ + + F D+R R P L + Sbjct: 346 AEESIYSGGFASEQDKSTMKTFHQSDWKDKLLIADKFKDQRFNYFAKRLMYEENPSILPK 405 Query: 415 KEKQDWLEHRKKMLTR------SRIEEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQW 466 + K + + I + N+L +L +Y + D + ++N L +L+ Sbjct: 406 DMHDEIHRAIAKQILSTNDEKWNTIPKAYNELDNLRAKYEEENDTERLAMMNDLNNFLEE 465 Query: 467 V 467 + Sbjct: 466 I 466 >gi|118602911|ref|YP_904126.1| exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567850|gb|ABL02655.1| Exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 471 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 178/474 (37%), Positives = 267/474 (56%), Gaps = 16/474 (3%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F YDYETFG +DR +QFAG+R D + I+ ++F+CKP +D LP PEA FIT Sbjct: 1 MKTFYWYDYETFGISPKIDRISQFAGIRTDENFNIIDE-QMFYCKPTNDCLPSPEACFIT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+PQ + G++E EF ++IH FS NTCI+GYN+IRFDD ++R+ YRNF D Y W Sbjct: 60 GISPQLCEQKGMIEHEFIKKIHAQFSTSNTCIVGYNSIRFDDEFTRHTLYRNFIDPYTWH 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGN+RWD+L+V+R YA D +W G FKL L+LAN IEH NAHDA AD Sbjct: 120 WQNGNTRWDILNVVRLCYALKKDTSLKWVYDKQGNPVFKLDQLSLANDIEHANAHDALAD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V+AT+A+ +I++ +P+LF Y + R K + I + P++H + M A S T L Sbjct: 180 VHATIAIAKIIKQTQPQLFNYSFSLREKKTVASKISL--FEPMLHTTDMHPAQLSCTRLS 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNK 299 +A+HP Y D V+ NL D V +LD L FT EL + IKE+ NK Sbjct: 238 VALAYHPEYNDRVLMFNLDQDPCVLLELDIEALKTLTFTKQSELSKEVERLQIKELIFNK 297 Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS--QDV 356 P+ +P I + + ++ ID +C+++L+ ++ + K ++V Sbjct: 298 SPMFVPNIYKLEPKIIKQLNIDMNQCMQHLSFIKDNQLKIGKIVQDLYKNDQKHIALKEV 357 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D LYDGF + D++I ++I + +L + F D +L LF ++ARN+P+TL+E E Sbjct: 358 DQSLYDGFIDNTDKRICNQIQALSVHKLKEFHPKFKDEKLSRLFMHFKARNYPNTLTENE 417 Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 K+DW E + + + I++Y K+ ++ ++ +E L L Y + Sbjct: 418 KEDWFEIVQGRIQTNQNGYITIDDYLQKINTMRTQH---PHQEKLWQQLEAYSK 468 >gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis 3_1_45B] gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis 3_1_45B] Length = 502 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 161/493 (32%), Positives = 249/493 (50%), Gaps = 34/493 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFIT 61 F YDYETFG D DRPAQFAG R + + ++ E+F+C+P +D LP+PE+ +T Sbjct: 9 TFYWYDYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIFYCRPTEDQLPNPESCLLT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ GV E+EF+ I + + P T IGYN + FDD +R +F+RNF D Y S Sbjct: 69 GITPQYCAEKGVCESEFADLIWERLNTPGTVSIGYNTLGFDDEVNRFLFWRNFLDPYTHS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------------SFKLQDLALANGI 169 W G SRWDL V+ A +A D I+WP ++ FKL+ L ANGI Sbjct: 129 WAKGCSRWDLFPVVCAAWALRGDTIKWPRWEEIDPIKYPKAEGRKGVCFKLEFLTKANGI 188 Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 EH +AHDA +DV AT+ + L+ E++PKL+ + ++ R ++ + +M P+V V+ Sbjct: 189 EHGHAHDALSDVEATIGMAKLLAEREPKLWRWAFENRTTAKVSAAV--ADMKPVVWVTPK 246 Query: 230 FGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLV 288 FG +R T + A +LS D V Q L ++ +RLF S E +G+ Sbjct: 247 FGIARGCTGIAACFFQEKHDCWM---WDLSFDPTVLQSLSYEEIKQRLFPSIKERAQGIE 303 Query: 289 PVPIKEVHLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFK 342 +PI+ + N P + + +E +++GID NL L+ QT + Sbjct: 304 RLPIRRLKANASPFVCANLKVLSRERAQKYGIDLDVAAANLQKLKAVAPAVQTIFAELAA 363 Query: 343 AIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLP--FSDRRLPELF 400 + + S D D LY GF + D+ +I PE L+ F D++ E+ Sbjct: 364 ERRSNDAAAPSADPDRSLYSGFASSGDKARFVQIRSMMPEHLAAEAPKFRFDDQKFAEML 423 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGE-YKGDEGKE 454 FR+RARN+P LS +E + W + + R + +Y +++ DE + Sbjct: 424 FRFRARNWPEMLSAEETERWRQFCADRIMSGRDGMLQLSDYFDQIDEAQASGLYDDERHQ 483 Query: 455 GLINALYEYLQWV 467 ++ ALY++ + + Sbjct: 484 QVLEALYDWGETL 496 >gi|219870303|ref|YP_002474678.1| exonuclease I [Haemophilus parasuis SH0165] gi|219690507|gb|ACL31730.1| exonuclease I [Haemophilus parasuis SH0165] Length = 457 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 185/417 (44%), Positives = 258/417 (61%), Gaps = 5/417 (1%) Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGITPQ + G+ E EF+ RIH FS PNTC++GYNNIR+DD +R F+RNF+D Y Sbjct: 1 MVTGITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPY 60 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +SW NGNSRWDLLDV+RA YA P+GI+W D+G SFKL++L ANGI H NAHDA Sbjct: 61 EYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAM 120 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 ADVYAT+A+ LI++K+PKLF++ R K L ++ID+ MTPLVHVSGM G R NTA Sbjct: 121 ADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTA 180 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296 + P+AWHP +++VI C+LSG++ + S L +RL+T EL+ GL VP+K VH Sbjct: 181 WVVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKAELEAQGLYTVPLKLVH 240 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR--QQTNLRDRFKAIYNKPYTSSSQ 354 +NKCPIL P E+ R GID CLENL L+ + + +S Sbjct: 241 INKCPILAPAKTLLPENATRLGIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSN 300 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 ++++ LYDGFF D+ M + PE+L+ L FSD R+ L F YRAR++ TL+ Sbjct: 301 NIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPRIEPLLFHYRARHYAETLTR 360 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471 E+ W ++ + L ++ E ++ + LS +Y + K L+ L Y ++ + Sbjct: 361 AEQVRWQKYCYQQL-EAKAEAFEQAVDLLSAQYHDNPDKIKLLTDLTAYAAQLMQPK 416 >gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374] gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374] Length = 474 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 165/479 (34%), Positives = 248/479 (51%), Gaps = 23/479 (4%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F YD ETFG + DR QFAGVR D + + + +P DYLPDP A +T Sbjct: 4 KKTFFWYDLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLACLVT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A+ G+ E +F+ I + NTC +G+N+IRFDD + RN+ YRN D YR Sbjct: 64 GITPQEAMEKGLRENDFANAILKEMGQKNTCSVGFNSIRFDDEFIRNLLYRNLIDPYRRE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEHVNAHDAKAD 180 W +GNSRWD+LD++RA + PD + WP D FKL +L AN I H +AHDA +D Sbjct: 124 WADGNSRWDVLDLIRAAHDLRPDSLAWPPSKDNGNPVFKLTELTTANNISHEHAHDALSD 183 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYATLA+ L++E+ P+LF + R+K +++++++ TP +H F R T + Sbjct: 184 VYATLAISRLLKERNPQLFVWALSLRDKKKVKEIVNPPFGTPFLHTCASFTTPRGCTRPV 243 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 +++ P +SVI +L+ D+ LFT+ DE VP ++ LNKC Sbjct: 244 VAISFVPSNPNSVICFDLTQDLDP------------LFTASDEDIMRVPGVLRIA-LNKC 290 Query: 301 PILMPIDY--CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 P + P+ R ID K + +RQ+ NL RF++ + D D Sbjct: 291 PFVSPLSVLGKDDAIARRLDIDMKTAMARYERIRQEINLPSRFRSAVERDEYEQVADPDF 350 Query: 359 QLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 ++Y GFF+D DR+ + +T Q +LNL F D R PE+ +RY RN+P TL E++K Sbjct: 351 RIYAGGFFSDADRERFSIVRKTEASQKLSLNLRFDDSRAPEMVWRYVCRNWPETLDEQQK 410 Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 W + + Y K+Q ++ ++ AL E+ + + + Sbjct: 411 ARWQSFSANRILNPPGDIMVTWQFYTRKIQEKLQSNDTPAHEKPVLAALKEWGEMIARE 469 >gi|84387297|ref|ZP_00990317.1| exonuclease I [Vibrio splendidus 12B01] gi|84377746|gb|EAP94609.1| exonuclease I [Vibrio splendidus 12B01] Length = 351 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 177/346 (51%), Positives = 233/346 (67%), Gaps = 1/346 (0%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT Sbjct: 6 QPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALIT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQKA G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WS Sbjct: 66 RITPQKAASQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDVMRA++A PDGI WP ++G SFKL+ L++ANGIEH NAHDA ADV Sbjct: 126 WQNGNSRWDLLDVMRAVHALRPDGINWPPNEEGYPSFKLEHLSVANGIEHENAHDAMADV 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L ++ +PK+F+YLY+ R+K +L L+DI NMTPL+HVSGMFG + T+ I Sbjct: 186 IATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIV 245 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+AWHP +++VI +L+ D +LD+ +L RL+T EL + +PVPIK V LNKC Sbjct: 246 PMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKC 305 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346 PIL P E+ E GID ++CL+NL LLR+ +R++ +Y+ Sbjct: 306 PILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYS 351 >gi|221134294|ref|ZP_03560599.1| exodeoxyribonuclease I [Glaciecola sp. HTCC2999] Length = 488 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 157/478 (32%), Positives = 246/478 (51%), Gaps = 15/478 (3%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +DYET+G D P QFA +R D ++ + K DYLP P+AV +TGI Sbjct: 7 SFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ L +G E F ++IHQ PNTC++GYN+I+FDD SR F+RNF D Y+ + Sbjct: 67 TPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPYQREYL 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +GNSRWDL++++RA YA P+GI+WP D+G SFKL+ L NGI H NAHDA +DV+A Sbjct: 127 HGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDALSDVHA 186 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+A+ LI++++PKLF Y Y R+K + ++++ + PL+ ++ A ++I P+ Sbjct: 187 TIAIAQLIQQQQPKLFAYAYQLRSKQAVIRILEQHHGQPLIFINPYRSAKFGCVSIIMPM 246 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPI 302 HP K++ + +L+ D+ + D L + F + P + + N+CP Sbjct: 247 CPHPVNKNATVCIDLTKDIFPLINEDLDTLQRIQFLPKAQRNEETPDIATIVIKHNQCPF 306 Query: 303 LMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNK------PYTSSS 353 L PI + E ID + +E+L + Q + + Sbjct: 307 LAPIKTLSQSRSEALNIDLNKVDQQVEHLKHICQDQESYANLIMTLTQLNSQTYDAEKPA 366 Query: 354 QDVDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412 DV++ LY G F D ++Q ++ +P +L L R+ ELF R+ ARNF TL Sbjct: 367 TDVEASLYTGGFMNDAEKQFCQQVHMASPNELVNLKNNTPSPRIDELFQRFIARNFLDTL 426 Query: 413 SEKEKQDWLEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 S + W ++ LT + + Y ++ L + L+ L +Y + Sbjct: 427 STDLQSQWYVDCQRRLTNNTQKLTLMRYFEIIEELKSTENLSSTQLYLLEELTKYGKE 484 >gi|311086276|gb|ADP66358.1| exonuclease I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 505 Score = 299 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 193/463 (41%), Positives = 281/463 (60%), Gaps = 6/463 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT Sbjct: 35 TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWH + +I +L D++ ++ K++ +K L+ + +HLN+CP Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360 IL PI +KE + R + + L+++ K I++K ++ VD ++ Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 L+H +L +EYKN +Q L +Y + K L+ L ++ Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492 >gi|311087440|gb|ADP67520.1| exonuclease I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 505 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 192/463 (41%), Positives = 280/463 (60%), Gaps = 6/463 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT Sbjct: 35 PPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWH + +I +L D++ ++ K++ +K L+ + +HLN+CP Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360 IL PI +KE + R + + L+++ K I++K ++ VD ++ Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 L+H +L +EYKN +Q L +Y + K L+ L ++ Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLSDF 492 >gi|257471605|ref|ZP_05635604.1| exonuclease I [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 505 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 193/463 (41%), Positives = 282/463 (60%), Gaps = 6/463 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT Sbjct: 35 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWH + +I +L D++ ++ K++ +K L+ + +HLN+CP Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360 IL PI +KE + R + + L+++ K I++K ++ VD ++ Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 L+H +L +EYKN +Q L +Y + K L+ L ++ Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492 >gi|88800886|ref|ZP_01116440.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297] gi|88776399|gb|EAR07620.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297] Length = 517 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 170/475 (35%), Positives = 249/475 (52%), Gaps = 14/475 (2%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ YDYET+G + DR AQFA VR D IE FCKP D + DP AV IT Sbjct: 8 PPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQIT 67 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ++P + + G+ E EFS+ +H + PNTC GYN+IRFDD SR +FYRN + Y Sbjct: 68 RLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNLINPYERE 127 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWDLLDV+R +A PDGI+WP RDDG+ SF+L+ L ANG+ H NAHDA +DV Sbjct: 128 WKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANAHDAVSDV 187 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+AL LIR+++PKLF+Y + R+K++ R+ ID+ P +H SG AS + Sbjct: 188 KATIALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASEFCMGIEV 247 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300 P+ HP + VI ++ D D D+ L L+ +EL +G P+K +HLN+ Sbjct: 248 PLMAHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLKTIHLNRS 307 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ- 359 P++ P+ E R G+D + + L ++ + ++ Q Sbjct: 308 PMIAPMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAAITDPEQA 367 Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 LY GF +D D+ +++R+ + PEQ + D RLP + AR FP L+E++ Sbjct: 368 LYSGFISDHDQALLNRMRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPDCLTEQQL 427 Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 +W + R+ L + + +L E D + YL+ Sbjct: 428 SEWQDQRRTYLIEQQDERHLTLSQALTDTLALLAETPDDPA----LTDTRMYLES 478 >gi|320086500|emb|CBY96271.1| exonuclease I, 3'-> 5' specific [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 333 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 183/323 (56%), Positives = 234/323 (72%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308 Query: 302 ILMPIDYCKKEHFERWGIDHKRC 324 +L + + E +R GI+ Sbjct: 309 VLAQANTLRPEDADRLGINPPAL 331 >gi|261855671|ref|YP_003262954.1| exodeoxyribonuclease I [Halothiobacillus neapolitanus c2] gi|261836140|gb|ACX95907.1| Exodeoxyribonuclease I [Halothiobacillus neapolitanus c2] Length = 495 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 232/489 (47%), Gaps = 27/489 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ YD+ET G D DRP QFA +R + + E I+S + + + LP P+AV +TGI Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 64 TPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 PQ G EAEF+ IH P TC +G+N++RFD R +F+RN D Y W Sbjct: 62 LPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAHEW 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +GNSRWD+LD RA P+GI WP+ + GA + +L+ L N I H NAHDA DV Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 ATLA L+R + PKLFEYL R K + +D VHVSG ++ + ++ A Sbjct: 182 ATLAFARLMRAQSPKLFEYLLSLRKKAVVADFVDNPERASFVHVSGRISSTLGSASVFAN 241 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCP 301 + + +L D D D LA R F + + +PIK +HLN+ P Sbjct: 242 LGQVQGINTQRLLWDLRFDPTEVLDDDMETLAARRFLRDADAQDNQHRLPIKLLHLNRAP 301 Query: 302 ILMPIDYCKKEHF-ERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +++P K+ ER +D +N + Q + + D+ A+ + +SQD + Sbjct: 302 VVVPNAILKEGDIVERMQLDLDAVQKNTRTMAQFKREVADKLHAVLAEQMAFASQDAECA 361 Query: 360 LYDGFFADVDRQIMDRILRTAPEQ----------------LSTLNLPFSDRRLPELFFRY 403 LY+GF +VDR +D R + + + D RLPEL FR+ Sbjct: 362 LYEGFMPNVDRYALDDFNRVFDQAMAAGGSAQDEPVTEALRKLMAQSWQDARLPELVFRF 421 Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYK------NKLQSLSGE-YKGDEGKEGL 456 AR P L+E E+ W L + + Y + +L + DE L Sbjct: 422 VARLRPDLLNEDERTQWQSWVDSRLNAAPDQRYMGFAGFFAAIDALMADAAYRDEATLAL 481 Query: 457 INALYEYLQ 465 + L + + Sbjct: 482 LTQLKAWGE 490 >gi|71892235|ref|YP_277968.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796341|gb|AAZ41092.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 500 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 203/488 (41%), Positives = 308/488 (63%), Gaps = 18/488 (3%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F IYDYETFG + ALDRPAQFAG+R + + IE ++FFC+ ++DYLPDP++V IT Sbjct: 9 QPSFFIYDYETFGINPALDRPAQFAGIRTNNTLKPIEKEKIFFCRLSNDYLPDPQSVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI PQ LR G++E+EF+RRIHQ F +P TCI+GYNNI FDD +SRNIFYRNF+D Y W+ Sbjct: 69 GIAPQDTLRHGLIESEFARRIHQLFCIPKTCILGYNNIHFDDEFSRNIFYRNFHDPYLWA 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + GNSRWDLL V+RA Y+ P+GI WP SF+L+DL AN I+H++AHDA +DV Sbjct: 129 YQRGNSRWDLLHVLRACYSLCPNGITWPLNIQNKPSFRLKDLTQANAIKHLSAHDAMSDV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240 YATL L LI+E +P+LF++L+D+R K QL+K+ID+ M PL+ + ++ I Sbjct: 189 YATLELTKLIKEAQPQLFQFLFDHRTKYQLQKIIDLDTMNPLIFIMNKINNKYKNFITYI 248 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV-PIKEVHLNK 299 AP++ HP + +I C+L+G++ +L+ + ++L+++H + ++ P++ + LN Sbjct: 249 APISRHPINPNILIACDLNGNIDNLVNLNINTIYQKLYSNHITIYDILKKIPLRFIRLNA 308 Query: 300 CPILMPIDYCKKEHFE-----RWGIDHKRCLENLTLLRQQTNLR----------DRFKAI 344 CPIL+PI++ +K + + +++ CL+NL +R N + Sbjct: 309 CPILIPINFFEKNNINTTYTMQLSTNYRYCLKNLNFIRMHENSVYLRNKINTLYTIIGSY 368 Query: 345 YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404 N+ ++ VDSQLY F + DR+I++ I RT ++L L D RL L F YR Sbjct: 369 INQKNIYNNLHVDSQLYHRLFNNSDRKIIESIRRTHSKELKNLCTDHVDTRLKPLLFYYR 428 Query: 405 ARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE-YKNKLQSLSGEYKGDEGKEGLINALYEY 463 ARNFP+TL+ +E++ WL ++K L + + Y +KL L YK ++ K L+++L +Y Sbjct: 429 ARNFPNTLNYQEQKKWLNYKKNKLFNTDQSKSYNDKLNQLLSIYKYNDQKITLLHSLQKY 488 Query: 464 LQWVIPKE 471 Q++ Sbjct: 489 YQYLYEVH 496 >gi|161485723|ref|NP_660867.3| exonuclease I [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090272|sp|Q8K923|EX1_BUCAP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase gi|21623449|gb|AAM68078.1| exodeoxyribonuclease I [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 482 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 201/458 (43%), Positives = 277/458 (60%), Gaps = 6/458 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ YDYETFG +LD+PAQF+ +R D+ + +E + F+C P+DDYLPDP ++ ITGI Sbjct: 11 NFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSILITGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP+ + G E +FS++IH PNTCIIGYNNI FDD +RNIFYRNF D Y WSW Sbjct: 71 TPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLDPYEWSWK 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N NSRWDLL+V+RA YA P GIQWP + G FKL DL N I H NAHDA +DVYA Sbjct: 131 NNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATSDVYA 190 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ L LI+ K+PKLF++ + YR KN+L +LIDI+ TP+++VS FGA R N + I P+ Sbjct: 191 TIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSSYFGALRQNMSCILPL 250 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 +W K+ +I +L D+ K + S+ +K L + I V+LN+CPIL Sbjct: 251 SWDLHNKNILISIDLFKDIDKLI-----VFCKTVSISNISIKDLFDLGIVLVYLNRCPIL 305 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQLYD 362 PI +KE R + + L+++ L D K + K + S +VD Q+YD Sbjct: 306 APIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLLKKNENKNSLNVDLQIYD 365 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 FF D+ ++ +I T L + L F D RL ELFFRY+ARNF + L EK++W+ Sbjct: 366 SFFNFHDKNLIKKISLTKSSDLKKMKLDFKDPRLKELFFRYKARNFFNILKNDEKKEWIN 425 Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460 + K L + Y +K++SL Y D K L++ L Sbjct: 426 YCLKTLNSFFLTGYIDKIESLLKIYSYDVKKNNLLSDL 463 >gi|148244981|ref|YP_001219675.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA] gi|146326808|dbj|BAF61951.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA] Length = 473 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 164/478 (34%), Positives = 261/478 (54%), Gaps = 20/478 (4%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F YDYETFG +DR +QFAG+R D + ++ ++F+CKP +D L PE IT Sbjct: 1 MKTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLIT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+PQ + G++E +F ++IH S P+TC+IGYN+IRFDD ++R YRNF D Y W Sbjct: 60 GISPQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWH 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W NGN+RWD+LDV+R YA D +W + FKL L+LAN IEH AH+A AD Sbjct: 120 WKNGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALAD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+A+ +I++ +P+LF Y + R K +++ I + P++H S ++ A+ S T L Sbjct: 180 VYATIAIAKIIKKTQPQLFNYAFSLRKKKTIKEKIKL--FEPMLHTSRVYSATLSCTRLS 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE---LKGLVPVPIKEVHL 297 +A+H Y D V NL D + +L+ L +FT +++ K + + IKE+ Sbjct: 238 VALAYHS-YHDRVFVFNLDQDPCILLELNIKTLKTLMFTKNNQSALSKEMKGLQIKELIF 296 Query: 298 NKCPILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQ 354 NK P+ +P Y + + ++ ID CL+ L +++ + + N S Sbjct: 297 NKSPMFVPNVYKLESKIIKQLKIDMSTCLQRLEFIKKNQVIISKVVQDLYRNDQQRQPSS 356 Query: 355 DVDSQLYDGFFADVDRQI-MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 DVD LYD F D + ++I + +L + F D RL +L ++ARN+P+ L+ Sbjct: 357 DVDQALYDDFINDNTDKHICNQIQTLSTNELKNFHPKFKDNRLSKLLIHFKARNYPNILT 416 Query: 414 EKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 E EK++W + ++ + I++Y ++ + ++ +E L L Y + Sbjct: 417 ENEKEEWFKTVQERVQTGKNGYTTIDDYLARINIIRKQH---PNQEKLWKQLETYSKS 471 >gi|325971901|ref|YP_004248092.1| exodeoxyribonuclease I [Spirochaeta sp. Buddy] gi|324027139|gb|ADY13898.1| Exodeoxyribonuclease I [Spirochaeta sp. Buddy] Length = 471 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 23/472 (4%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 YD ETFG D DR AQFAG R D I V +CK +DDYLPDP + IT I Sbjct: 9 TIFWYDLETFGLDSRYDRIAQFAGQRTDLNLNPIGEPIVLYCKLSDDYLPDPLSCTITSI 68 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ + G+ E++ RI+ FS PNT + G+N IRFDD + RN YRNF D Y+ WD Sbjct: 69 TPQEVNKKGICESDLIDRINSEFSKPNTVVAGFNTIRFDDEFIRNALYRNFLDPYKREWD 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG--ATSFKLQDLALANGIEHVNAHDAKADV 181 N SRWD++D++RA Y P+GI WP R + +F+L L AN IE V AHDA DV Sbjct: 129 NYCSRWDIIDLVRAAYDLRPEGIAWPPRKEETGNPTFRLVALTQANNIEQVGAHDALVDV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+A+ LI+EK+PKL+EY + R K Q++K++ P+++ + F + + LI Sbjct: 189 RATIAIARLIKEKQPKLYEYYFALRAKTQVKKVVQTPFGEPVLYTAAFFSKNEGCSRLIT 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+ +++I +LS D+ L K + + +NKCP Sbjct: 249 PITHMKSNANAIICFDLSKDVAPLLQATEETLLKT-------------EGVFTLSINKCP 295 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P++ + + GID + L + QT L + I K VD QLY Sbjct: 296 FVSPLNVLTDQLAIKLGIDKELALFRHQQIVNQTKLLMTARNIEEKYEGVDD--VDFQLY 353 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 D FF D D++ + I + P+ +L+L F D R+ L FR+ ARN+ L++++K+ W Sbjct: 354 DRFFGDADQKRFNLIRQAEPKDKLSLHLDFEDNRVAPLLFRHVARNWSEVLTDEQKRKWR 413 Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 +K K++ + ++ ++ L Y + + Sbjct: 414 SFCANRTLNPPGSIKMNWNFFKRKIEEKLASTETSAEEKRVLADLKAYGEEL 465 >gi|91762381|ref|ZP_01264346.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002] gi|91718183|gb|EAS84833.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002] Length = 475 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 169/480 (35%), Gaps = 29/480 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + I+D E+ + + + G+ VD +++++ F C+ + +P A+ + Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFN-FRCRLPEGEVPQAMALIVNKT 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + + + ++ F + +G++NI FDD RN F+R Y + Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAIFMGWSNIGFDDEMIRNEFFRGIRYPY-ITN 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N R D L++ R +A I+ + G KL+ LA NG E AH A D Sbjct: 120 ATPNKRHDGLNIARGAHAVDESVIKTETNAKGNAVMKLESLARMNGFESSGAHSALFDAE 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T+ ++ LI++ +P+ ++ NK+ + + M L L Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYHFGKNYRFVVAPLHPK 239 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 HP Y+ +L D D+ +L + ++ + NK PI Sbjct: 240 HCIHPIYQWGQ-AFDLKIDPIPLFDMSISELKSAIKKL---------KFLRTIRSNKAPI 289 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV------ 356 ++ Y + +D E L+ + +Q Sbjct: 290 ILDASYGLQV-EPYSNLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFDSQVDLL 348 Query: 357 -DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + +Y F D + + + + L F D R+ + + P TL Sbjct: 349 AEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESPETLPPD 408 Query: 416 EKQDWLEHRKKMLTRSRIEEYKN------KLQSLSGEY--KGDEGKEGLINALYEYLQWV 467 + + + E++ + +L Y + DE K ++ + E+++ + Sbjct: 409 MFKTIKRGIAERILSDEKEKWWTCKEFYFECDNLRDRYTNEKDEKKLKFLDEINEFVEGI 468 >gi|71083189|ref|YP_265908.1| exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062] gi|71062302|gb|AAZ21305.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062] Length = 475 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 82/480 (17%), Positives = 169/480 (35%), Gaps = 29/480 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + I+D E+ + + + G+ VD +++++ F C+ + +P A+ + Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFN-FRCRLPEGEVPQAMALIVNKT 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + + + ++ F + +G++NI FDD RN F+R Y + Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPY-ITN 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N R D L+++R +A ++ G KL+ LA NG E AH A D Sbjct: 120 ATPNKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNGFESSGAHSALFDAE 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T+ ++ LI++ +P+ ++ NK+ + + M L L Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYHFGKNYRFVVAPLHPK 239 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 HP Y+ +L D D+ +L + ++ + NK PI Sbjct: 240 HCIHPIYQWGQ-AFDLKIDPIPLFDMSISELKSAIKKL---------KFLRTIRSNKAPI 289 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV------ 356 ++ Y + +D E L+ + +Q Sbjct: 290 ILDASYGLQV-EPYSNLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFDSQVDLL 348 Query: 357 -DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + +Y F D + + + + L F D R+ + + P TL Sbjct: 349 AEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESPETLPPD 408 Query: 416 EKQDWLEHRKKMLTRSRIEEYKN------KLQSLSGEY--KGDEGKEGLINALYEYLQWV 467 + + + E++ + +L Y + DE K ++ + E+++ + Sbjct: 409 MFKTIKRGIAERILSDEKEKWWTCKEFYFECDNLRDRYTNEKDEKKLKFLDEINEFVEGI 468 >gi|254284002|ref|ZP_04958970.1| exonuclease I [gamma proteobacterium NOR51-B] gi|219680205|gb|EED36554.1| exonuclease I [gamma proteobacterium NOR51-B] Length = 408 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 162/410 (39%), Positives = 232/410 (56%), Gaps = 12/410 (2%) Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + G E +F +IH +VP TC +GYN+IRFDD R YRNF+D Y+ + NGNSR Sbjct: 1 MDRGDSECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSR 60 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 WDL+DV RAIYA P+G QWP+RD+G SF+L+DL ANGI H AHDA +DV AT+ L Sbjct: 61 WDLIDVARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGIAHGAAHDALSDVDATIDLA 120 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 + +P LF L R K + L+D+ ++ P+VHVS M+G+ RSN AL+ P+ HP Sbjct: 121 RHFQNVQPALFAELLSMRRKRHVETLMDLGSLRPVVHVSSMYGSDRSNLALVVPLVRHPV 180 Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307 ++ +I +LS F + +A RLFT EL +G V PIK +H+NK P+++ Sbjct: 181 NRNEIICADLSQPPD-FLSESATDMAARLFTPASELPEGAVRPPIKTIHINKSPVVLNTQ 239 Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + + E ER G+D + +L +RQ L+ R + IY++ + D D LYD Sbjct: 240 WVRGEVAERLGLDGEAHRRHLAEIRQANDKNPEGLKQRLQDIYSERRFAPRTDPDVMLYD 299 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 GFF + DR D + +PEQL++ F D RL EL FRYRARNFP TL +E W E Sbjct: 300 GFFPNSDRSQFDGLRAASPEQLAS-GWVFEDARLEELLFRYRARNFPATLDAEESARWQE 358 Query: 423 HRKKMLTRSRIE----EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 H + + ++ +L + ++AL +Y+Q ++ Sbjct: 359 HCRHRYFDADAPFPLTAFREELAQERSAPDLSDSVARALDALEDYVQTLL 408 >gi|260577353|ref|ZP_05845324.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2] gi|259020426|gb|EEW23751.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2] Length = 457 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 116/472 (24%), Positives = 192/472 (40%), Gaps = 31/472 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV YD ET G A D+P QFA +R D +IE C+ A +P P+A+F+TG+T Sbjct: 3 FVFYDLETTGISPAFDQPLQFAAIRTDDSLVEIERVN-LRCRIAPHIIPSPQALFVTGVT 61 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 P + + + EF++ I + +G+N IRFD+ R FY+N + + Sbjct: 62 PAQLVDPELPSLFEFTQTIMELTERWAPATWVGFNTIRFDEEVLRQAFYQNLQPNIYATQ 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGN+R D+L + A++ + + WP+ D T+FKL LA ANG NAHDA DV Sbjct: 122 LNGNNRLDILTAVYAVWCRNRGLMHWPTDDTDRTTFKLDRLAPANGFNAHNAHDALGDVE 181 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LI + P L+ + R+K + ++ ++ P+ V FG + Sbjct: 182 ATIHIAGLIAKGDPALWSAILHNRDKQNVTAIL--ESFRPVELV-LRFGGGPPRAYVGCF 238 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + +L D L K T+ E P I+ + NK P Sbjct: 239 CGTAAGNPTNAAFFDLEAG-------DPEVLIKADDTALFEAVDSSPQIIRSIATNKVPS 291 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L PI +H + + A Y + + V+ Q+Y Sbjct: 292 LFPIASPDPDHLRKAAFIAANPAFRAR-------VGQAMAARYVEDPDAPPPPVEKQIYG 344 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 GFFA DR ++ R + + +D RL +L R A + P +S E + + Sbjct: 345 GFFAKADRDLLADFQRADWRRRQEIANVLTDVRLRQLGRRLIAFHAPELMSSDEAKQFDA 404 Query: 423 HRKKMLT--------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + + I + D+ ++ + ++++ Sbjct: 405 FLRDRWNAEEGPKTEWTTIASAMRAIAEQRALPGTDD---AALDEIADFIRQ 453 >gi|154252272|ref|YP_001413096.1| exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1] gi|154156222|gb|ABS63439.1| Exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1] Length = 468 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 110/470 (23%), Positives = 185/470 (39%), Gaps = 27/470 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV +D ET G D+ FA +R D +I+ E + +P P A++ G+ Sbjct: 2 SFVFFDTETTGLRHGFDQIVHFAAIRTDADLNEIDRFEA-HSRLLPHVVPHPFALYTNGL 60 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + + DG+ + I + + +GYN+IRFD+ R F++ + +Y S Sbjct: 61 SIGRLTDDGLPSHYVMVQTIRRKLLSWSPSIFVGYNSIRFDEEMLRQAFFQTLHPAYLTS 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +GN R D L +M A A SP + P G +F+L+ LA ANGIEH AHDA ADV Sbjct: 121 N-HGNCRADALGLMTAAAALSPSCLLVPFGATGRPTFRLEQLASANGIEHTRAHDAMADV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ATL L + E+ +L++ + K + +D ++ + F ++ + A + Sbjct: 180 LATLGLCRCVYERSSELWQRFVRFSKKATVADFVDSEDA----FILTEFFSNEAYHAPVV 235 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + P + + L GD+ F + L L P PI+ +N P Sbjct: 236 CLGRDPEQPNGRLCLRLDGDVGRFYTMSDEDLRVEL--------ARKPSPIRRFRINAAP 287 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQ 359 L + + + GID ++ + Y + + S+ V+ Q Sbjct: 288 TLTALYDARDQMLN--GIDLDEVETRARRVKDDPTFCAHLISAYASIRGPHAPSRHVEEQ 345 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 +YD F D M+R + ++ ++ F D RL R L E+ + Sbjct: 346 IYDRFPGPDDEARMERFHKVGWREVLSIVQSFEDERLRCFGLRLVYFEHRSVLPEEIRLR 405 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 L + + +L G D G++ YL Sbjct: 406 VERELTDRLVEEESGGLTLRRALQETDALLGSDYTD--TNGILADYRAYL 453 >gi|254451818|ref|ZP_05065255.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] gi|198266224|gb|EDY90494.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] Length = 500 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 113/462 (24%), Positives = 193/462 (41%), Gaps = 30/462 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV YD ET G A D+P QFA + D + + + + C+ A LP P+A+ +T +T Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDRVNI-RCRLAPHILPSPQALVVTRVT 61 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 P + + EFS+++ + +GYN I+FD+ R FYRN + + Sbjct: 62 PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNLSPNVYATQ 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGN+R+D+L + A Y PD + WP D G SFKL LA ANG + NAHDA DV Sbjct: 122 FNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDVE 181 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LI + P L+ L D +K +++ +++ P V+ FG + Sbjct: 182 ATIHIARLIAMRSPALWSELLDNAHKARVQA--KLESFRPYELVT-RFGGGEPRSYTGCF 238 Query: 243 VAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + + +L D F + + + P I+ V NK P Sbjct: 239 CGYSQGNRAQAAFFDLDAADPAEFVEASDEAIFAAV--------DATPKIIRGVSTNKAP 290 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L+ +EH R + + L + A + + + + V+ Q+Y Sbjct: 291 ALLEHTAPSEEHLRRAAVIAEAPAFRLR-------VGAAMAARFVEDPDAPPKPVERQIY 343 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 F+++ D+Q++ + + +D RL +L R A + P LS +E + Sbjct: 344 GEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLSSEETALFN 403 Query: 422 EHRKKMLTRSRIE--------EYKNKLQSLSGEYKGDEGKEG 455 ++ + + + L+ L + + Sbjct: 404 GFLREKWSAPDGPETEWMTHGKAQAALEELRAAGAAEPHEID 445 >gi|27904977|ref|NP_778103.1| exonuclease I [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|32129519|sp|Q89A43|EX1_BUCBP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase gi|27904375|gb|AAO27208.1| exodeoxyribonuclease I [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 481 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 177/466 (37%), Positives = 278/466 (59%), Gaps = 9/466 (1%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ YDYETFG++ ALD+P+QF+ ++ D + I S + FC P+ DYLPDPE+V ITGI Sbjct: 10 TFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +P+ GV E EF+++I+ F +TCIIGYNNI FDD ++RNIFYRNF +SY WSW Sbjct: 70 SPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNFLNSYEWSWK 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWD+LD++RA Y P+GI WP +D + S +L D++LAN I H AH+A +DVYA Sbjct: 130 NGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHNASSDVYA 189 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ + LI++KKPKLF + + YR K + LID+ ++ P+V++S FG + I P+ Sbjct: 190 TMNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISRFFGVVNRYISYIVPI 249 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 WHP + ++ +LS D++ + KR + K + + I+ +++N+CPIL Sbjct: 250 LWHPINSNILVSIDLSQDVQKILN-----FFKRNSILNVNYKEIFLMGIRFIYVNRCPIL 304 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ---TNLRDRFKAIYNKPYTSSSQDVDSQL 360 +P + + + R I++K NL LLR+ +F + + +VD ++ Sbjct: 305 IPTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKKFLCSIAEAPKYNGSNVDLKM 364 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+ FF+ +D ++ I T P + +N D R+ +LF + AR P L EK W Sbjct: 365 YNSFFSYIDNNVIKNIHSTLP-KRIKINFMKYDNRINQLFILFLARYRPDMLDYSEKYFW 423 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 ++ + + + I++Y+NK+ L +YK L+ L+EY+++ Sbjct: 424 IQRYLNIFSYANIQKYENKILKLIVKYKNHVRNVQLLEELFEYVKY 469 >gi|319760584|ref|YP_004124522.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF] gi|318039298|gb|ADV33848.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF] Length = 491 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 188/480 (39%), Positives = 293/480 (61%), Gaps = 17/480 (3%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F IYDYETFG + ALDRPAQFAG+RVD + I E+FFC+ DYLP+PE+V T Sbjct: 7 QPNFFIYDYETFGLNPALDRPAQFAGIRVDDKLCPIAKKEIFFCQIPHDYLPNPESVLTT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ L+ G+ E+EF+ RI F+ PNTCI+GYNNI FDD ++R+ FYRNF D Y W+ Sbjct: 67 GITPQYTLQYGLTESEFAYRIFNIFNKPNTCIVGYNNINFDDEFTRHTFYRNFCDPYLWA 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +++GNSRWDLL ++RA Y+ P+ I WP + SF+L DL AN IEH+N HDA +DV Sbjct: 127 YNHGNSRWDLLPILRAYYSLYPEKIYWPINNKNKISFRLIDLTYANHIEHLNVHDAMSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTALI 240 YATL ++ L ++ P F++LY++R K+QL+K+I+ + PL+ +S + + Sbjct: 187 YATLEIMKLTQKTHPYFFQFLYNHRTKDQLKKIINFDFIDPLIFISNTINDTYNNFIKFL 246 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNK 299 AP++WHP K+ +I +L+ + +L+ +L + L+ L L +P++ + LN Sbjct: 247 APISWHPNNKNILIAYDLNSKPDLLLNLNINKLYQNLYQGTQNLSDLFKQIPLQLIKLNS 306 Query: 300 CPILMPIDYCKKEHFERWGIDH----KRCLENLTLLRQQ----------TNLRDRFKAIY 345 CPIL+PI KKE+ + + CL+NL ++ ++ + Sbjct: 307 CPILIPIHLIKKENIFYYKNSLFSYYQYCLKNLNFIQTNINHTYLKNKIKTFYTTIESYF 366 Query: 346 NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405 T VD+QLY FF DRQ++++I T +QLS + + +D RL LFF Y+A Sbjct: 367 KLKQTYQKVHVDNQLYFKFFNFSDRQLINKIRNTNIQQLSKIKINSTDTRLKLLFFFYKA 426 Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 RNFP++L+ KE++ WL++++ +L +S+ + Y + +L ++ + + L++ L +Y + Sbjct: 427 RNFPYSLNVKEQKSWLDYKRLLLQQSKFQNYLTNIDNLLL-HQNNLIQINLLHKLKQYYK 485 >gi|310780268|ref|YP_003968600.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926] gi|309749591|gb|ADO84252.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926] Length = 487 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 145/479 (30%), Positives = 264/479 (55%), Gaps = 16/479 (3%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ YDYETFG D DR +QFAGVR D ++ ++ V++CK A+DYLP+PEA I Sbjct: 1 MKKTYLWYDYETFGADPKRDRISQFAGVRTDMDFKVVDE-MVYYCKVAEDYLPNPEASII 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP+++ G+ E E + + + F+ T IGYN+I+FDD +RN+FYR F D Y Sbjct: 60 TGITPKESNEKGITENELAEILFKEFTKEGTVTIGYNSIKFDDEVTRNLFYRTFRDPYER 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W N SRWD + + +Y P+ ++WP +DDG SF+L++L++ANGI H NAHDAK+D Sbjct: 120 EWKNNCSRWDFMRAILGVYVMKPELLKWPLKDDGRPSFRLEELSIANGIIHENAHDAKSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 VYAT+ L LI +K P +F+Y ++ R+K+ ++ + + +H+ +G R ++I Sbjct: 180 VYATIGLAELISKKSPNVFDYFFNLRDKDFVKSELSKDEL--FLHIDFGYGYDRGYASII 237 Query: 241 APVAW--HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296 + + K++ + ++ D+ + +D ++ + L+ S+++L+ G+ +K++ Sbjct: 238 YKIGDFINQGDKNAFLFIDILSDVENLEKMDFDEIKEYLYYSNEKLEEIGITRPGLKQIR 297 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 +N+ P+++P + +++ I + + + ++ F ++ + D Sbjct: 298 INQSPLVIPYNNLREKPKFLEEISVNLKYKMEKIKKLSAKRKEEFLNVFTREKDKVKIDA 357 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D +Y F + D++ M + R + F D++ EL+FR+ RN P L+E E Sbjct: 358 DLDIYGSFASQWDKKEMAAMHR----ENYQYIPKFKDKKYKELYFRFIGRNMPEILTEDE 413 Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 +W H K ++ I+ KN++ L +Y+G++ K ++ + Y + + + Sbjct: 414 MSEWKRHCYKCISNEREGFQNIDSLKNEILELEKKYRGEKEKIKILKDIKIYAENLEKE 472 >gi|254453670|ref|ZP_05067107.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238] gi|198268076|gb|EDY92346.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238] Length = 459 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 112/473 (23%), Positives = 196/473 (41%), Gaps = 33/473 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F YD E G A D+P QFA + D ++ ++E C+ A +P P A+ +TG+ Sbjct: 2 TFAFYDLEITGLSPAFDQPLQFAAILTDDEFREVERVN-LRCRIAPHIIPSPWALAVTGV 60 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWS 121 P + L G+ EF++ I + I G+N+IRFD+ R FY+N + + Sbjct: 61 RPAQLLDAGLPTLFEFTQEIGALIDRWSPAIWTGFNSIRFDEEVLRQAFYQNLSPNVYAT 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NGN+R+D+L + A Y PD + WP D G S KL LA ANG NAHDA DV Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLVWPEDDTGRRSLKLDRLAPANGFNAHNAHDALGDV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ + LI + P L+ L D K +++ +++ P V+ FG + + Sbjct: 181 EATVHIARLIATRSPALWSELLDNAQKARVQA--KLESFRPYELVTH-FGGGEPRSYVGC 237 Query: 242 PVAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + +L D F + L + P I+ V NK Sbjct: 238 LCGYSQGNSAHAAFFDLDAADPAEFVEASDEALFAAV--------DATPKIIRGVSTNKA 289 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P L+ EH R + + L + A + + + + V+ Q+ Sbjct: 290 PALLEHTAPSAEHLRRAAVIAEAPAFRLR-------VGAAMAARFVEDPDAPPKPVERQI 342 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y F+++ D+Q++ + + +D RL +L R A + P L+ +E + Sbjct: 343 YGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLNLEETALF 402 Query: 421 LEHRKKMLTRS--------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + + + +L+ L + + ++ + ++++ Sbjct: 403 NGFLLEKWSAPDAPETEWMTFRKAQAELEELRAAGAAEPHE---LDEIADFMK 452 >gi|330898429|gb|EGH29848.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT] Length = 307 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 142/307 (46%), Positives = 193/307 (62%), Gaps = 4/307 (1%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H AHDA +D Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+AL LIREK+PKL++YL R+K ++++ + + M PLVH+SG F A+R+ ++ Sbjct: 180 VRATIALARLIREKQPKLYDYLLALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+AWHP ++++I C+L D + L +RL+T HD L G +PVP+K +H+N+ Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297 Query: 300 CPILMPI 306 CP++ P+ Sbjct: 298 CPVIAPL 304 >gi|86139894|ref|ZP_01058460.1| exonuclease I [Roseobacter sp. MED193] gi|85823523|gb|EAQ43732.1| exonuclease I [Roseobacter sp. MED193] Length = 459 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 111/474 (23%), Positives = 193/474 (40%), Gaps = 33/474 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV YD ET G D+P QFA + D + + + + C+ A LP P+A+ +T +T Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNI-RCRLAPHILPSPQALVVTRVT 61 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 P + + + EFS+++ +F +GYN ++FD+ R FY+N + + Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGN+R+D+L + A Y P + WP+ D G SFKL LA ANG NAHDA DV Sbjct: 122 FNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDVE 181 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LI + P L+ L D +K +++ +++ P V+ FG + + Sbjct: 182 ATIHIARLIATRSPALWSELIDNAHKARVQA--KLESFRPYELVT-RFGGGEPRSYVGCF 238 Query: 243 VAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +L D F + + P I+ V NK P Sbjct: 239 CGYSHGNSAQAAFFDLDAADPSEFLGASDEAIFAAV--------DATPKIIRGVSTNKAP 290 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L+ EH + + N + + + + + V+ Q+Y Sbjct: 291 ALLEHTAPSAEH-----LHRATIIANAPEF--LRRVGAAMANRFVEDSDAPPKPVERQIY 343 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 F++ D+Q++ + + SD RL +L R A P L+ E + Sbjct: 344 GEFYSSADKQLLQEFQHATWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLTADEMALFK 403 Query: 422 EHRKKMLTRS--------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + + + E+ + L L + + + A+ +L+ + Sbjct: 404 AYLRDKWSAPDVPETEWMTFEKAEAALGELRSAGAAEPRE---LEAIGSFLKPM 454 >gi|15617148|ref|NP_240361.1| exonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386767|sp|P57620|EX1_BUCAI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase gi|25403649|pir||G84994 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Buchnera sp. (strain APS) gi|10039213|dbj|BAB13247.1| exodeoxyribonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 413 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 175/408 (42%), Positives = 252/408 (61%), Gaps = 6/408 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT Sbjct: 8 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 67 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS Sbjct: 68 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 127 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV Sbjct: 128 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 187 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I Sbjct: 188 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 247 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWH + +I +L D++ ++ K++ +K L+ + +HLN+CP Sbjct: 248 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 302 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360 IL PI +KE + R + + L+++ K I++K ++ VD ++ Sbjct: 303 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 362 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408 Y+GFF D++ + I T P L + F D RL LFFRYRARNF Sbjct: 363 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNF 410 >gi|254455766|ref|ZP_05069195.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211] gi|207082768|gb|EDZ60194.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211] Length = 481 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 92/485 (18%), Positives = 178/485 (36%), Gaps = 33/485 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET + G+ +D ++++E C+ D +P A+ I Sbjct: 2 KYVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSA-RCRMPQDRVPSATALCINKS 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + E ++ F + +GY++I FDD R F+++ Y + Sbjct: 61 NVDLLTKGNLSHYEMLSQVENKFKEWSPATFLGYSSINFDDEVIRKEFFKSLRKPYL-TN 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GN R D L++++A +A D ++ G S KL+ LA NG E AH A D Sbjct: 120 TEGNVRHDALNIVKAAFAIDDDILKTELNAKGNKSMKLESLARLNGFESAGAHSALFDTE 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T+ ++ LI++K+P ++ +K + LI +N+ L L Sbjct: 180 LTVKVLDLIKKKQPDIWTEYLKTSSKVVVENLIKQENIITLNEYFYGKSYLYLCAPLHPN 239 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 HP YK + L D+ Q L+ L K + S P ++ V NK PI Sbjct: 240 FCSHPVYKWGQVVD-LKADIEAIQKLNYEDLKKEMKKS--------PKFLRTVKSNKAPI 290 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS-------SSQD 355 ++ + K +D + L++ I + + Sbjct: 291 ILDKSFALKVD-PYKKLDSSLINKRAELVKTNEKFSKDISNILREAAEEKIETSSQEDIE 349 Query: 356 VDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + +Y G F + D+ + + + ++ L F D RL P L + Sbjct: 350 PEESIYSGGFTSAKDQALFPKFHNSNWKEKFALLDKFEDERLITFGHGLIFNEAPEILPK 409 Query: 415 KEKQDWLEHRKKMLTRSRIEEY------KNKLQSLSGE------YKGDEGKEGLINALYE 462 + + + + E++ ++ + +K + K ++ + E Sbjct: 410 EIHKKIKRRIASRILSTNKEKWWTVSAFYSECDEIRENEDKMFSFKTVDEKLKFLDGINE 469 Query: 463 YLQWV 467 Y+ + Sbjct: 470 YVMNL 474 >gi|330860010|emb|CBX70337.1| exodeoxyribonuclease I [Yersinia enterocolitica W22703] Length = 337 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 161/337 (47%), Positives = 239/337 (70%), Gaps = 2/337 (0%) Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194 MRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVYAT+A+ +++ Sbjct: 1 MRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVYATIAMAKRVKQA 60 Query: 195 KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254 +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+AWHP K++VI Sbjct: 61 QPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVI 120 Query: 255 GCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPILMPIDYCKKEH 313 C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L P E+ Sbjct: 121 MCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCPVLAPAKTLLPEN 180 Query: 314 FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQI 372 +R GID +RCL+NL LLRQ +R++ A++ + + S DVD+QLY+GFF+D DR Sbjct: 181 ADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQLYNGFFSDADRAT 240 Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432 M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q WLEHR++ L + Sbjct: 241 MKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWLEHRREALNPEK 300 Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 +++Y +L++L +Y+ D+ K L+ AL++Y + ++ Sbjct: 301 VQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 337 >gi|149914802|ref|ZP_01903332.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b] gi|149811595|gb|EDM71430.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b] Length = 459 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 116/471 (24%), Positives = 201/471 (42%), Gaps = 33/471 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV YD ET G D+P QFA + D + + + + C+ A LP P+A+ +T ++ Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNI-RCRLAPHILPSPQALVVTRVS 61 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 P + + EFS+++ +F +GYN ++FD+ R FY+N + + Sbjct: 62 PDQLTDPNLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGN+R+D+L + A YA PD WP+ D G SFKL LA ANGI NAHDA DV Sbjct: 122 FNGNTRFDILPAVYAAYARQPDLFVWPTDDTGRRSFKLDRLAPANGINAHNAHDALGDVE 181 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LI + P L+ L D +K +++ +++ P V+ FG + + Sbjct: 182 ATIHIARLIATRSPALWSELIDNAHKARVQA--KLESFRPYELVT-RFGGGEPRSYMGCF 238 Query: 243 VAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +L D F + + + P I+ V NK P Sbjct: 239 CGYSHGNSARAAFFDLDAADPSDFLEASDEAIFAAV--------DATPKIIRGVSTNKAP 290 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 ++ EH R + + A + + + + V+ Q+Y Sbjct: 291 AILEHTAPSAEHLRRAAVIANAPEFR-------QRVGAALAARFVEDPDAPPKPVERQIY 343 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 F+++ D+Q++ R A + + SD RL +L R A P L+ KE + + Sbjct: 344 GEFYSNADKQLLQEFQRAAWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLNAKEAELFK 403 Query: 422 EHRKKMLTRS--------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 + ++ + E+ + L+ L + + ++A+ +L Sbjct: 404 CYLREKWSAPDVPETEWMTFEKGEAALRDLRAAGAAETTE---LDAIASFL 451 >gi|213580552|ref|ZP_03362378.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 342 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 168/342 (49%), Positives = 241/342 (70%), Gaps = 1/342 (0%) Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 RWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+ Sbjct: 1 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAM 60 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP Sbjct: 61 AQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHP 120 Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPID 307 +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + Sbjct: 121 ENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQAN 180 Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFA 366 + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+ Sbjct: 181 TLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFS 240 Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426 D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR++ Sbjct: 241 DADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQ 300 Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 301 VLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 342 >gi|33519912|ref|NP_878744.1| exonuclease I [Candidatus Blochmannia floridanus] gi|33504257|emb|CAD83520.1| exodeoxyribonuclease I [Candidatus Blochmannia floridanus] Length = 501 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 190/488 (38%), Positives = 283/488 (57%), Gaps = 20/488 (4%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+IYDYETFG + ALDRPAQFA +RV+ +E EVFFC+ +DYLP+PE+V IT Sbjct: 7 KPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP L +G++E +F+ +I Q F+VPNTCI+GYNNI FDD +SRNIFYRNFYD Y+WS Sbjct: 67 GITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYDPYKWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +GNSRWDLL V+RA Y+ P GIQWP SF+L DL LAN I+H+NAHDA +D+ Sbjct: 127 YHHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAHDATSDI 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR-SNTALI 240 +ATL ++ LI+ +P+LF++LY++R KNQL+K+I++ +M PL+H+S + + Sbjct: 187 FATLEIMKLIKYTQPQLFQFLYNHRTKNQLQKIINLNSMKPLIHISNKINNKYNNFIHFL 246 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNK 299 P+ HP + +I NL + + +L+ L + + + + L+ +P++ + LN Sbjct: 247 LPITLHPNNHNVLITYNLLNKLDILWNLNINTLYQNIKDNQQCIYNLLKQIPLQLIRLNS 306 Query: 300 CPILMPIDYC--KKEHFERWGIDHKRCLENLTLLRQQTNLRDR-------------FKAI 344 CPI +PI F+ +L L + + ++ Sbjct: 307 CPIFIPITVLQENNNIFKYTSELLSDYQNHLKNLHEIKQKINYTHLQQKIKSFYVIIESY 366 Query: 345 YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFF 401 NK S VD+QLY+GFF D +I+ +I Q + +N +D RL L F Sbjct: 367 LNKIKNKLSTHVDNQLYNGFFQYSDCRIIKQIRNITDVQKLSTIHINSNSNDNRLKSLLF 426 Query: 402 RYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461 YR+RNFPHTL+ +EK+ W ++K ML + + + + K L+++L Sbjct: 427 FYRSRNFPHTLNSEEKKIWTTYKKNMLLNQDKYKNYLHHINYLLFNQNNIKKINLLSSLK 486 Query: 462 EYLQWVIP 469 +Y + Sbjct: 487 KYYTYFYN 494 >gi|213621019|ref|ZP_03373802.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 275 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 161/267 (60%), Positives = 201/267 (75%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +A Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDL 268 P+AWHP +++VI +L+GD+ +L Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLEL 275 >gi|115524481|ref|YP_781392.1| exodeoxyribonuclease I [Rhodopseudomonas palustris BisA53] gi|115518428|gb|ABJ06412.1| Exodeoxyribonuclease I subunit C [Rhodopseudomonas palustris BisA53] Length = 490 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 98/469 (20%), Positives = 176/469 (37%), Gaps = 27/469 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G D+ FA +R D + + EV + +P P A+ ++ Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVR-SRLLPHVVPHPSALRTNRLS 61 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++ + + E R I + + +GYN+IRFD+ R+ ++ + +Y S Sbjct: 62 IERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTSN 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NGN R D L ++ A SP + P +G F+L LA N ++H AHDA ADV Sbjct: 122 -NGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVA 180 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 ATL L L+RE+ P+L++ + K + ++ ++ F ++++ A + Sbjct: 181 ATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESEDG----FFLTEFFSNQAYHAPVVC 236 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + P + + L + L L P P++ + +N P Sbjct: 237 LGPDPDQPNGRLCLRLDVPPEELALMPDEALQAYLSAK--------PSPVRRLRINASPT 288 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQL 360 L G D + L++ R R ++Y + + S V+ Q+ Sbjct: 289 LTAFHDAPDLMLN--GADLDELEDRARRLKEDAAFRSRIISLYVAVRESFAPSLHVEGQI 346 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDG D + + + + ++ D RL R L K Sbjct: 347 YDGLLGPDDERRIADFHEASWLEALSIVRDLDDERLRIFGRRLIYFGGRSVLPSDLKLIV 406 Query: 421 LEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 L + +++ + + L D ++ YL Sbjct: 407 ERDLTDRLVDNAAGNFTLQQALEETERLLNGEGIDADG--ILPGYRTYL 453 >gi|260072659|gb|ACX30556.1| exonuclease I [uncultured SUP05 cluster bacterium] Length = 422 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 152/424 (35%), Positives = 240/424 (56%), Gaps = 15/424 (3%) Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P PEA +TGI+PQ + GV+E EF ++I+ F+ PNTCI+GYN+IRFDD ++R YR Sbjct: 2 PAPEACAVTGISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYR 61 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEH 171 NF D Y W W +GN+RWD+LDV+R YA D ++W ++G FKL L+LANGIEH Sbjct: 62 NFIDPYAWHWKDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIEH 121 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 NAHDA ADV AT+ + +I+E +P+LF+Y + R K + I + P++H SGM+ Sbjct: 122 ANAHDALADVRATIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMYP 179 Query: 232 ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPV 290 A+ S T L +A+HP Y D I NL D + +LD +L +FT EL G+ + Sbjct: 180 ATLSCTRLAVALAYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKRL 239 Query: 291 PIKEVHLNKCPILMPIDYC-KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NK 347 IK++ NK P+ +P Y + E+ ID ++ L ++ + ++ N Sbjct: 240 EIKDLIFNKSPMFVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRND 299 Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407 + + DVD LYDGF + D++I +++ R + ++L + F D++L L ++ARN Sbjct: 300 KERAPTVDVDQALYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKARN 359 Query: 408 FPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYE 462 +P++L+E E +DW E + + +++Y ++ + ++ KE L L Sbjct: 360 YPNSLTEDEAEDWFETVQGRIQAGENGYTSLDDYYQRITLMQKQH---PEKETLWKQLES 416 Query: 463 YLQW 466 Y + Sbjct: 417 YAES 420 >gi|254451927|ref|ZP_05065364.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] gi|198266333|gb|EDY90603.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] Length = 464 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 111/469 (23%), Positives = 196/469 (41%), Gaps = 27/469 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F +D ET G A D+P QFA + D +++IE ++ C+ A +P P A+ +TG+ Sbjct: 2 NFAFFDLETTGVSPAFDQPLQFAAILTDSDFKEIERVDMR-CRLAPHIIPSPHALAVTGL 60 Query: 64 TPQKALRDGVVE-AEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWS 121 P + + + E EF++ + + S + I G+N+IRFD+ R FY+N + Sbjct: 61 RPAELIDPALPELFEFTQSLTELVSRWSPAIWTGFNSIRFDEEMLRQAFYQNLQAEVFAT 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NGN+R+D++ + ++ D ++WP + G FKL LA NG E NAHDA DV Sbjct: 121 QFNGNTRFDIMTAVFGVWHRHRDLLEWPVDETGKVRFKLDRLAPLNGFEGHNAHDALGDV 180 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 A + + LI ++ P L+ L R+K ++ ++ + LV G FG Sbjct: 181 EAIIHIAQLIAQRDPALWTELLASRDKGYVKARLERLSPLELV---GRFGGGPPKAITGC 237 Query: 242 PVAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + + +L D D L VP I+ + +NK Sbjct: 238 LCGYSSKNANQAFFFDLDAADPADLIDASDDTFVAAL--------EAVPWAIRSLTINKA 289 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P+L+ EH R + + + A Y + V+ Q+ Sbjct: 290 PVLLEPAATTDEHERRARLIAEAPQFR-------ERVVQTMAARYPTKPDAEPIAVEKQI 342 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 ++GF++ D++ + Q + F D RL +L R A LSE+E++ + Sbjct: 343 FNGFYSWADKERLKVFQGADWPQRQEIVATFDDSRLRQLGRRLVAFYAHDLLSEEEQRQY 402 Query: 421 LEHRKKML-----TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 E + K Q+++ + ++ + +L Sbjct: 403 GEWLHGRWQAASRLETEWMTTKKARQAIAEMRESSNYDNLMLEEIEAFL 451 >gi|303256767|ref|ZP_07342781.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47] gi|330999116|ref|ZP_08322837.1| exonuclease [Parasutterella excrementihominis YIT 11859] gi|302860258|gb|EFL83335.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47] gi|329575505|gb|EGG57044.1| exonuclease [Parasutterella excrementihominis YIT 11859] Length = 494 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 123/489 (25%), Positives = 222/489 (45%), Gaps = 25/489 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ YDYETFG + DRP Q+ R D + I + V + + ADDY+P P + +T Sbjct: 8 STSYLWYDYETFGTEARKDRPVQYGSFRTDTNFNIIGQSMVLYAQLADDYIPSPGSSLVT 67 Query: 62 GITPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GITP + + + EA+F++ I P T IGYNN +DD +R +F+RN +Y Sbjct: 68 GITPMSLMDEENALAEADFAKVIRDEMGKPGTITIGYNNRNYDDEMTRFMFWRNLLPAYD 127 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + G R+D+ ++ A+YA +P + WP+++DG FKL L AN + H +AHDA + Sbjct: 128 TEYGEGRGRFDVFLLVIAVYAVAPQILNWPTKEDGTVCFKLDRLTPANNLPHRHAHDASS 187 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 D +ATL L LI K P+L+EY +++ +L+ PL++V R Sbjct: 188 DAFATLQLAKLIASKNPRLWEYALSISKSDKIVELL--NEKRPLLYVDRYSLHHRRGLRP 245 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF-TSHDELKGLVPVPIKEVHLN 298 + P+ +P ++ I +LS D + + +R F T + +G+ P+P + Sbjct: 246 VMPLFENPSVRNEWICWDLSADPNEMWAITEKDMKERSFVTREQKEQGIKPLPFVRIKTK 305 Query: 299 KCPILM---------PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349 K P LM + + + + L + L + +L + + Sbjct: 306 KQPFLMKGMSVWITKNGQGLFEHPAAYYSENASKILASADRLSELLSLFMALADRKAEEH 365 Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLP--FSDRRLPELFFRYRARN 407 + ++ GF ++ D + M PE+++ F L EL + RN Sbjct: 366 -AKDIPEEALYSGGFPSNSDARKMATFRALPPEEMADAFDRLEFDREDLAELTLYFMGRN 424 Query: 408 FPHT-LSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALY 461 +P L+ + ++ W H+ L + ++ +L+ + DE ++ + Sbjct: 425 YPEYALTPETERLWRLHKYNKLVKGLGGARTFTQFYEELEEVRA--GADEHGLEILEDVE 482 Query: 462 EYLQWVIPK 470 Y++ + + Sbjct: 483 GYVENLRSE 491 >gi|116515281|ref|YP_802910.1| SbcB [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257135|gb|ABJ90817.1| exodeoxyribonuclease I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 475 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 160/464 (34%), Positives = 249/464 (53%), Gaps = 5/464 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + YDYETFG++VALD+ +QF + D ++ I + FC P DYLPDPEA+ IT Sbjct: 7 KKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I PQ + G+ E S++IH FS N CIIGYNNI FD+ +RNIFYRN +D Y WS Sbjct: 67 KILPQYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N N WD+L+++RA Y F P + W +G SFKL D+ L N I+H++ HDA +DV Sbjct: 127 WKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIHDAYSDV 186 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT + + K F YLY K + + P ++S FG+ N I Sbjct: 187 YATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINYNFGCIM 246 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + HP YK++++ +LS D + + L K+ T +K L V IK V ++K P Sbjct: 247 YIGLHPLYKNNIVIFDLSSDFKKIFN-----LYKKYSTCLISIKKLFNVGIKVVSISKSP 301 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + + +H R ID+ +C +N LL+ +++ + ++ D+D LY Sbjct: 302 LFFSYNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLMLY 361 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + FF + DR ++ I + P++ + F D R+ +LFFR +ARNF L+ E + W Sbjct: 362 NNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKKWQ 421 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + K + ++EEY K++ ++ ++ L+ L++Y++ Sbjct: 422 FYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIK 465 >gi|299132766|ref|ZP_07025961.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2] gi|298592903|gb|EFI53103.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2] Length = 473 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 103/470 (21%), Positives = 177/470 (37%), Gaps = 27/470 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV +D ET G D+ FA +R D +I E + LP P A+ G+ Sbjct: 5 SFVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIGRFEA-RSRLLPHVLPHPAALRTNGL 63 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + L + + R I Q + +GYN++RFD+ R+ ++ + +Y S Sbjct: 64 PIGRLLDGSLPSHYDMVRSIRQRLLSWSPSIFLGYNSVRFDEEMLRHALFQTLHPAYLTS 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N SR D+ ++ A A SP + P +G + F+L+ LALANG+ AHDA +D Sbjct: 124 NHNN-SRADVWGLVMAAAAVSPACLNVPIGPEGRSIFRLEQLALANGVAQEQAHDALSDA 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ATL L L+ ++ P+L++ + K + ++ ++ L F A+++ A + Sbjct: 183 IATLELCRLVHQRSPELWQRFVRFSKKATVADFVEAEDGFML----TEFFANQAYHAPVV 238 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + P + NL+ D F + +L L P P++ + +N P Sbjct: 239 CIGRDPDQSNGRFCLNLNRDADRFAAMTDDELRAEL--------AQKPCPVRRLRINAAP 290 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359 L + + I ++ L +R + Y + S S+ + + Sbjct: 291 TLTAFYDAPEVMLDGLDI--DAVEARARRVKSDPALCNRLVSAYTSTREPRSPSRHAEER 348 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 LYDGF D M + D RL R L E + + Sbjct: 349 LYDGFPGPQDEARMIEFHDADWTDRLAIVQSLDDERLRSFGLRLLYFEARSVLPEALRLE 408 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 L + +E+ + + D L+ YL Sbjct: 409 LDYALSGRLVDAEAGGLTLEQALRAIDEAPSDDASDAAG--LLTGYRTYL 456 >gi|213025919|ref|ZP_03340366.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 338 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 163/338 (48%), Positives = 237/338 (70%), Gaps = 1/338 (0%) Query: 132 LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191 +DVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L+ Sbjct: 1 MDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLV 60 Query: 192 REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKD 251 + ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP ++ Sbjct: 61 KTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRN 120 Query: 252 SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKK 311 +VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + + Sbjct: 121 AVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRP 180 Query: 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDR 370 E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+D DR Sbjct: 181 EDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFSDADR 240 Query: 371 QIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTR 430 M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT Sbjct: 241 AAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTP 300 Query: 431 SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 301 EFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 338 >gi|145207002|gb|ABP37869.1| EpsE [Pseudoalteromonas sp. SM9913] Length = 356 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 171/350 (48%), Positives = 236/350 (67%), Gaps = 2/350 (0%) Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y + N NSR Sbjct: 1 MQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 60 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 WD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV AT+AL Sbjct: 61 WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTATIALA 120 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH S A++ T +AP+++HP Sbjct: 121 KLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVAPMSFHPV 180 Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307 K++VI +L+ + +V DL+ QL KRL+T +L +G +PV +K VHLNKCPIL P Sbjct: 181 NKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKCPILAPAK 240 Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDGFFA 366 E+ R GID ++CL NL +L+ T LRD+ ++N+ S++ +VD LYDGF + Sbjct: 241 TLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDYLLYDGFTS 300 Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 D+ I PE L++L L F D + L FRYRARN+P TL+ E Sbjct: 301 HADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPETLNPPE 350 >gi|27375179|ref|NP_766708.1| exonuclease I [Bradyrhizobium japonicum USDA 110] gi|27348315|dbj|BAC45333.1| exonuclease I [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 104/472 (22%), Positives = 181/472 (38%), Gaps = 28/472 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV +D ET G D+ FA VR D ++ E + LP P A+ G+ Sbjct: 2 SFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFET-RSRLQPHVLPHPSALRTNGL 60 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + + I + + +G+N+IRFD+ R+ ++ Y +Y S Sbjct: 61 PIESLTDSSLPSHYTMVGDIRRTLISWSPAVFVGFNSIRFDEEMLRHALFQCLYPAYLTS 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D L ++ A A SP + P ++G +F+LQ LA ANG+ H AHDA +DV Sbjct: 121 NHRNC-RADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAANGVAHARAHDAMSDV 179 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ATL L L+ + P+L++ + NK + I++++ V F ++ + Sbjct: 180 LATLELSRLVYRRSPELWQRFVRFSNKATVADFIEVEDG----FVLTEFFGGQAYHTSVV 235 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + P + + +L+ DM + ++L L P PI+ +N P Sbjct: 236 CIGRDPDQANGRLCLSLNEDMGRLAAMSDLELQVHLTQK--------PSPIRRFRINAAP 287 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359 L + + G + L++ T L R A Y + + S ++ + Sbjct: 288 TLTAFYDAPEHMLD--GGSMGATGDRACLMKADTGLCARLVAAYMAAREPYALSPHLEER 345 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 +Y GF D + E + D RL R L E + + Sbjct: 346 IYSGFPGPADEARIAAFHDARWEDRLAIVQGMEDERLRWFGLRLIYFEARSVLPEPTRLE 405 Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + +T I++ + + + GE+ + L+ YLQ Sbjct: 406 VERYLTDQMTGDGSGCLTIDQAMAETERVLGEFASPDD---LLIQYRTYLQD 454 >gi|254510953|ref|ZP_05123020.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11] gi|221534664|gb|EEE37652.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11] Length = 469 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 195/471 (41%), Gaps = 30/471 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F +D ET G A D+P QFAG+ D E++E ++ C+ + LP P A+ +TG++ Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDI-RCRLSPHILPAPWALAVTGVS 60 Query: 65 PQKALRDGVVE-AEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 P + EFS+ + GYNNI FD+ R +FY+N + + + Sbjct: 61 PGMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQ 120 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +GN R D++ ++ A + + D + WP+ + G +FKL LA ANG N HDA ADV Sbjct: 121 MDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVE 180 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+ + LIR++ P ++ R+KN ++ ++ + L+ FGA+ A Sbjct: 181 ATINIAKLIRDRAPDVWVQSLRNRSKNNVQDIMQSGQVLTLIE---RFGATPPRAYRGAY 237 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +P ++++ +L D ++ P ++ V +N P Sbjct: 238 AGQNPDNRNALALMDLDLVDPNTLDPTDA-------SAIANAVSASPKTVRTVAINNAPN 290 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY--TSSSQDVDSQL 360 L + + L LR +L+ + + S V+ ++ Sbjct: 291 LFEVPIDDSD-----------LLNRAEDLRGNHDLQTALGNALAERFADRSEPDQVEQKI 339 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y GF++ D++ +++ + + + F DRRL L R N P LS + W Sbjct: 340 YAGFYSTDDKKRLNQFEFASWAKRIEIAQAFEDRRLQWLASRLIYLNEPSLLSRYAQDYW 399 Query: 421 LEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWV 467 + + ++ L+ + AL EY + Sbjct: 400 KDAIDQRWQNDDPNPEWTTIEHASRQLAEIADQGVLSIHDLQALKEYYSSL 450 >gi|330888491|gb|EGH21152.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020] Length = 363 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 214/360 (59%), Gaps = 9/360 (2%) Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 F+D Y W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L ANGI+H Sbjct: 1 FFDPYAREWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQ 59 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 AHDA +DV AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+ Sbjct: 60 AHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAA 117 Query: 234 RSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPI 292 R+ ++ P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+ Sbjct: 118 RNYLGVVLPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPL 177 Query: 293 KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTS 351 K +H+N+CP++ P+ + E +R +D T L + +D+ +Y K + Sbjct: 178 KLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFA 237 Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411 +S+D + QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP T Sbjct: 238 ASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDT 297 Query: 412 LSEKEKQDWLEHRKKMLTRSR--IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467 LS +E+Q W + ++ L+ + E + ++ +Y Q + Sbjct: 298 LSSEEQQRWQDFCQQRLSDPERGAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 357 >gi|297171091|gb|ADI22103.1| exonuclease I [uncultured Planctomycetales bacterium HF0200_11L05] Length = 468 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 103/474 (21%), Positives = 184/474 (38%), Gaps = 27/474 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D+ + Q + D +E F K +P PEA + T Sbjct: 10 YIFTDTETTGLDINFSQILQVGSLLTDENL-VVEKEHSLFSKLLPWIVPSPEAFLVHKKT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + D E ++ + + N I YN RFD+ R FY Y Sbjct: 69 -ECLNEDSPTHYEMMCQLREDWLNWSINKNPVFITYNGHRFDEELFRRQFYWCLLPPY-I 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + G +R DL+ + + F P+ + P ++ S KL D A AN I +NAHDA AD Sbjct: 127 TNTGGATRLDLMYTFQLVANFFPNSLTVPMNEENGISLKLTDWAEANKISSINAHDAVAD 186 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 Y + L LI EK P+++ +K+ +LI + + V T + Sbjct: 187 CYLMVNLSRLIAEKVPEVWNSSLRGSSKDGNLRLIQSEPFAMIGEV----IRKSRFTYPV 242 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + ++ V +L D +L +L +++ + I++V +NK Sbjct: 243 TFCGQNNKMQNEVAVADLYFDPDTLDELSDSELLEQISNAGT--------AIRKVRINKS 294 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDS 358 +M + I ++ E +R T L+ R + N+ + V+ Sbjct: 295 LPIMNA-LDIPSIHDTLDIPFEQLEERANKIRNNTKLQSRISELLTNNQIQYPPPKYVEQ 353 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 +Y GF + D M+R T + S L F D R EL R + ++ + Sbjct: 354 SVYSGFPSKEDELWMERFHATPWQDRSKLIDGFEDSRYRELAERLICVHETAGTPDQSLK 413 Query: 419 DWLEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 + + L+ I+ +K++ L + + +E K ++ L + L+ + Sbjct: 414 RYNTFISQRLSDKGPWLNIDNTLSKIEELLKKEEDEERK-NILIQLEKKLKKMA 466 >gi|154705994|ref|YP_001424798.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111] gi|154355280|gb|ABS76742.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111] Length = 458 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 108/475 (22%), Positives = 183/475 (38%), Gaps = 36/475 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA+ I Sbjct: 6 KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + L G E E R IHQ + P T +GYN + FDD + R FYRN Y + Sbjct: 65 FSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DN R DL + Y F P+ + WP D KL++L+ AN + AH+A DV Sbjct: 124 DNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234 A++AL L+ ++ + + K + ++L + + G+FGA Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 + A + + H YK+ L D + + + Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + + PI++P E + L Q + + + P + Sbjct: 285 KKMGEQPIVLPASDHYLRLSEERLQLATESKKWLESHSQLFHHICDYYQNFTYPKVPNLD 344 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + GF + + R P + + L F + FR R++P L Sbjct: 345 PDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404 Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + L ++ LTR N+++SL E D+ + L++ L YL+ Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456 >gi|29654660|ref|NP_820352.1| exonuclease [Coxiella burnetii RSA 493] gi|161831411|ref|YP_001597205.1| exonuclease [Coxiella burnetii RSA 331] gi|165924153|ref|ZP_02219985.1| exonuclease [Coxiella burnetii RSA 334] gi|29541928|gb|AAO90866.1| exodeoxyribonuclease I [Coxiella burnetii RSA 493] gi|161763278|gb|ABX78920.1| exonuclease [Coxiella burnetii RSA 331] gi|165916402|gb|EDR35006.1| exonuclease [Coxiella burnetii RSA 334] Length = 458 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 108/475 (22%), Positives = 183/475 (38%), Gaps = 36/475 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA+ I Sbjct: 6 KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + L G E E R IHQ + P T +GYN + FDD + R FYRN Y + Sbjct: 65 FSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DN R DL + Y F P+ + WP D KL++L+ AN + AH+A DV Sbjct: 124 DNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234 A++AL L+ ++ + + K + ++L + + G+FGA Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 + A + + H YK+ L D + + + Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + + PI++P E + L Q + + + P + Sbjct: 285 KKMGEQPIVLPASDRYLRLSEERLQLATESKKWLESHSQLFHHICDYYQNFTYPKVPNLD 344 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + GF + + R P + + L F + FR R++P L Sbjct: 345 PDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404 Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + L ++ LTR N+++SL E D+ + L++ L YL+ Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456 >gi|212212262|ref|YP_002303198.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212] gi|212010672|gb|ACJ18053.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212] Length = 458 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 109/475 (22%), Positives = 184/475 (38%), Gaps = 36/475 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA+ I Sbjct: 6 KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + L G E E R IHQ + P T +GYN + FDD + R FYRN Y + Sbjct: 65 FSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DN R DL + Y F P+ + WP D KL++L+ AN + AH+A DV Sbjct: 124 DNFCRRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234 A++AL L+ ++ + + K + ++L + + G+FGA Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 + A + + H YK+ L D + + + Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + + PI++P E + L Q + + + P + Sbjct: 285 KKMGEQPIVLPASDRYLRLSEERLQLATESKKWLESHSQLFHYICDYYQNFTYPKVPNLD 344 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + GF A + + R P + + L F + FR R++P L Sbjct: 345 PDAALYEVGFPAPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404 Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + L ++ LTR N+++SL E D+ + L++ L YL+ Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456 >gi|153209510|ref|ZP_01947415.1| exonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|212218768|ref|YP_002305555.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154] gi|120575335|gb|EAX31959.1| exonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|212013030|gb|ACJ20410.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154] Length = 458 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 108/475 (22%), Positives = 183/475 (38%), Gaps = 36/475 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA+ I Sbjct: 6 KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + L G E E R IHQ + P T +GYN + FDD + R FYRN Y + Sbjct: 65 FSIDQML-SGKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DN R DL + Y F P+ + WP D KL++L+ AN + AH+A DV Sbjct: 124 DNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234 A++AL L+ ++ + + K + ++L + + G+FGA Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 + A + + H YK+ L D + + + Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + + PI++P E + L Q + + + P + Sbjct: 285 KKMGEQPIVLPASDRYLRLSEERLQLATESKKWLESHSQLFHHIFDYYQNFTYPKVPNLD 344 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + GF + + R P + + L F + FR R++P L Sbjct: 345 PDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404 Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + L ++ LTR N+++SL E D+ + L++ L YL+ Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456 >gi|90409311|ref|ZP_01217406.1| putative exonuclease I [Psychromonas sp. CNPT3] gi|90309579|gb|EAS37769.1| putative exonuclease I [Psychromonas sp. CNPT3] Length = 361 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 127/359 (35%), Positives = 211/359 (58%), Gaps = 3/359 (0%) Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 YRNF D Y+ W NGNSRWD++D++RA YA P+GI WP +D SF+L+ L+ N + Sbjct: 1 YRNFADPYQREWKNGNSRWDIIDLVRACYALRPEGINWPVDNDDVPSFRLELLSKENALA 60 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 H AHDA +DVYAT+A+ LI+EK+PKL+ Y ++ RNK + + + + + TPL+HVSGMF Sbjct: 61 HDQAHDAMSDVYATIAVAKLIKEKQPKLYNYYFNLRNKKTVLETLKVGSFTPLMHVSGMF 120 Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289 A + + I P+ HP K++VI +L+ D+ + L Q+ + +++ +L +G+ Sbjct: 121 PALQGCISYILPICMHPTNKNAVIVVDLAKDLTNLESLSVEQIRQYMYSKTIDLPEGITR 180 Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349 +K +HLNKCP + P + + GID +C ++L +++ L D+ A+YN + Sbjct: 181 PALKLIHLNKCPFVSPAKTLSESRADELGIDRIQCRKSLNFIKENLALVDKLYAVYNTAH 240 Query: 350 TSSSQ-DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408 + LY GFF D+Q ++ + + + L+ F+D RL L + YRARN Sbjct: 241 APKQGLCAEEMLYHGFFNQEDKQQIEDVKHSNWQVLANKTFHFNDARLKTLLWHYRARNA 300 Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 P T+SE+E+ W + + + ++Y K+ +L+ E++ D K ++ L+ YLQ++ Sbjct: 301 PETMSEEEQDKWARECQAYVLDNT-QQYIEKIDALALEHQNDVAKIEILQKLHHYLQFL 358 >gi|320540911|ref|ZP_08040415.1| putative exonuclease I [Serratia symbiotica str. Tucson] gi|320029026|gb|EFW11201.1| putative exonuclease I [Serratia symbiotica str. Tucson] Length = 310 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 159/310 (51%), Positives = 219/310 (70%), Gaps = 2/310 (0%) Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y +SW NGNSRWDLLDVMRA YA PDGI WP +DG SF+L+ L ANG+EH AHDA Sbjct: 1 YAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHDA 60 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 +DVYAT+A+ +++ +P+LF++L YRNK++L LIDI +TPLVHVSGMFGA+R NT Sbjct: 61 MSDVYATIAMAKQVKQAQPRLFDFLLQYRNKHKLNTLIDIAEVTPLVHVSGMFGAARGNT 120 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVH 296 + +AP+AWHP K++ I C+L+GD+ L++ QL +RL+T D L P+P+K VH Sbjct: 121 SWVAPLAWHPVNKNAAIMCDLAGDLTPLLTLNADQLRERLYTRRDALTVDQPPIPLKLVH 180 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQD 355 +NKCP+L P E+ ER GID + C +NL LLRQ +R++ A++ + S D Sbjct: 181 INKCPVLAPARTLLPENTERLGIDRRTCRQNLQLLRQHPQVREKVVALFAEAEPYKGSDD 240 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 VD++LYDGFF+D D+ M I +T P+ L L+L FSD R+ EL FR+RARN+P+TL+ Sbjct: 241 VDARLYDGFFSDADKAAMKIIQQTKPQDLPALDLAFSDSRMKELLFRFRARNYPNTLNNA 300 Query: 416 EKQDWLEHRK 425 E+Q WL++R+ Sbjct: 301 EQQRWLQYRQ 310 >gi|330983976|gb|EGH82079.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 551 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 127/502 (25%), Positives = 216/502 (43%), Gaps = 42/502 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFIT 61 ++D ET G D+ QFAGV +D + I V D +P P A +T Sbjct: 6 QRLCVFDTETTGLSAHHDQIVQFAGVGLDPELNIIPGDEIVLDVLMRPDVVPSPGAFAVT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ ++ G+ E E + I F T I GYN RFDD RN FYRN D Y+ Sbjct: 66 GISISHLMQHGIPEFEAAGHIRNWFMRQEGTNITGYNTQRFDDEVIRNTFYRNMIDPYQH 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 WD GNSR D+L ++ ++A P+ ++WP DG S KL ++ NGI NAHDA+ D Sbjct: 126 EWDKGNSRSDILRLVTMVFALRPEMLRWP-LKDGRYSMKLGEMCRENGISLDNAHDARFD 184 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT+ L+ L+R+ P+L+++ +K Q++ L+ PL V F + + +++ Sbjct: 185 VMATIELMRLVRKANPRLWDHFLSLGDKVQIQNLV--NQRKPLAMVDPFFSREQGHLSIV 242 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299 P+ + K + +L D L+ ++ +R+FT +L +G I+ + NK Sbjct: 243 LPIIYDLSVKTKMYAVDLREDPTELLSLEPSEIRRRMFTKVSDLGEGEGISSIRSISTNK 302 Query: 300 CPILMPIDY--CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 P++ + + + R GID +RCL++ T++ R+R + + + + Sbjct: 303 QPMVTELSVLRGRDDLTRRAGIDMERCLKHATMIDADKGFRERLQQAFISDFDPPEDVYE 362 Query: 358 SQLYDGFFADVDRQ----------------IMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 G + I+ T P +LST+ RL Sbjct: 363 GIYSLGMIGRDEHNLRSRTRRLISIPGFEGQRPEIIATDPHELSTMQSR---DRLRMFEL 419 Query: 402 RYRAR--NF------PHTLSEKEKQDWLEHRKKMLTRS-------RIEEYKNKLQSLSGE 446 RA+ N+ + + E +W++H + +E + L + Sbjct: 420 TLRAKWANYGDEVMGYNKFTPAEIGEWVKHLDRRWFSDHNLKNCSNLERFTTALAEVKAS 479 Query: 447 YKGDEGKEGLINALYEYLQWVI 468 D +E + L ++ + Sbjct: 480 VAMDATQEKALEELEAHVMSTV 501 >gi|119713146|gb|ABL97215.1| exodeoxyribonuclease I [uncultured marine bacterium EB0_49D07] Length = 469 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 92/477 (19%), Positives = 174/477 (36%), Gaps = 33/477 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ + YD ET G + Q ++ +R E + C P +P P A+ Sbjct: 4 SSNLIFYDTETTGLLKDFSQILQCGSIQTNRSLEILHEQN-LGCAPLPWAIPYPMAMVTN 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T V E R +++ + I +N + +D+ R FY N ++S Sbjct: 63 KKTN--LFHSNVSHYELMRDLNRQWRQWTIDEPAVFITFNGMAYDEELVRRQFYWNLFES 120 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP-SRDDGATSFKLQDLALANGIEHVNAHD 176 Y + NGN R D+L +M + AFSPD + P S K D+A ANGIE +AHD Sbjct: 121 YL-TNTNGNGRLDILLMMNNVAAFSPDVLNIPLFDGGPGISLKQADIAEANGIEIGDAHD 179 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 A AD + L+ I KKP+L ++ K ++ ++ L V Sbjct: 180 AIADCKLMIGLLEKINAKKPELIDFFLSISTKPGIQAAVEHPGFLALGEV----FRREIF 235 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 + P ++ +LS + ++D+ ++ + P K+ Sbjct: 236 KYPVVPCGSKAPND--LMFFDLSFEPEEIFEMDTQEIYSLVQKPGKS------GPFKKYG 287 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLR----DRFKAIYNKPYTSS 352 +NK + P + + + ID + + +R+ T+ + + Sbjct: 288 INKTIPVCPSSMIDNK--DIFDIDFEVLEKRAAQVRENTDFQALVSQAMADKIDNWNNEY 345 Query: 353 SQDVDSQLYDGFFADVDRQIMDRILRTA-PEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411 GF + D+++M R E+ + +D R R + +P Sbjct: 346 DHIEQMIYAGGFPSKQDKELMADFHRIDSAEERIKICRNITDERHRLFAERLICQFYPQE 405 Query: 412 LSEKEKQDWLEHRKKMLTR----SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 E + + L + + +L+ L + E + ++ ++L Sbjct: 406 APEDMMNRYQSLITQRLNEDGPWGSMSKVMTELEKLLEKDNSTE-TQTILEDTKKFL 461 >gi|254419026|ref|ZP_05032750.1| exonuclease family [Brevundimonas sp. BAL3] gi|196185203|gb|EDX80179.1| exonuclease family [Brevundimonas sp. BAL3] Length = 476 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 95/470 (20%), Positives = 171/470 (36%), Gaps = 28/470 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV YD ET G D+ QFA + D +++ E C+ +P P+A+ ++ Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFE-LRCRLQPHVVPHPKAMLANRLS 61 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++ + + R I + S IGYN+IRFD+ R+ F++N + +Y + Sbjct: 62 IERLTDLSLPSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYL-TS 120 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G R D + ++ A + + P DG +F+L+ +A ANG+ AHDA AD Sbjct: 121 TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNVDAAHDAMADAQ 180 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 TLAL + + P+++ NK + L+ + + L G + R ++A Sbjct: 181 MTLALCRRVASEAPEIWSRAIRTSNKAAVADLVASEPLFILTEFYGFEASHR----VVAC 236 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + + + +L+ D L + LA + P++ + N P Sbjct: 237 LGPEAGNPNGRLCWDLASDPAEAVQLQTDDLAALIS--------QREGPLRRLKTNAAPA 288 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS--QDVDSQL 360 + ++ D L+ L R + +S V+ QL Sbjct: 289 IAMSWDAPEDWA---LGDVDEAERRAEWLQANPELSSRIIEAQAARWANSPLSPHVELQL 345 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YD F D D ++M + + F+D RL R +++ Sbjct: 346 YDRFPDDDDLRLMADFHGAPKIRQREIVDSFADVRLRTFGRRLLHMEHRSAFIGNDRRAA 405 Query: 421 LEHRKKMLT-----RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + L + + L D L+ +L Sbjct: 406 DADLAERLLIDKNGPLTMPAARTLAAELVASGVADAE--ALLKDYGVWLD 453 >gi|257486439|ref|ZP_05640480.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 341 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 128/338 (37%), Positives = 199/338 (58%), Gaps = 9/338 (2%) Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195 RA YA PDGI WP DG + KL+ L ANGI+H AHDA +DV AT+AL LIREK+ Sbjct: 1 RAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDVRATIALARLIREKQ 59 Query: 196 PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIG 255 PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ P+AWHP ++++I Sbjct: 60 PKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVVLPLAWHPHNRNALIV 117 Query: 256 CNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHF 314 C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+CP++ P+ + E Sbjct: 118 CDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRCPVIAPLGVLRSEDQ 177 Query: 315 ERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIM 373 +R +D + T L + +D+ +Y K ++S+D + QLYDGF D DR++ Sbjct: 178 QRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQQLYDGFIGDRDRRLC 237 Query: 374 DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR- 432 +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q W + ++ L+ Sbjct: 238 EQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQRWQDFCQQRLSDPER 297 Query: 433 -IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467 + E + ++ +Y Q + Sbjct: 298 GAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 335 >gi|311086852|gb|ADP66933.1| exonuclease I [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 412 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 151/364 (41%), Positives = 220/364 (60%), Gaps = 5/364 (1%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT Sbjct: 35 TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWH + +I +L D++ ++ K++ +K L+ + +HLN+CP Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 IL PI +KE + R + + L+++ K I++K ++ Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389 Query: 362 DGFF 365 F Sbjct: 390 YNGF 393 >gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2] gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2] Length = 471 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 109/484 (22%), Positives = 193/484 (39%), Gaps = 31/484 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ YD ET G + A D+ FA +R D + +I+ T + +D +P P A Sbjct: 1 MKTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVIS-LRNDIVPSPGAFITH 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 +TP+ G+ E + IH+ + P+T IGYN++ FDD + R FYRN D Y Sbjct: 60 RLTPEDLKD-GLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQ 118 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + N +R DLL + F PDGI WP D S +L+ ++ N ++ AHDA D Sbjct: 119 YANDCARMDLLPIATLYRIFKPDGIHWPV-IDDKASMRLELISEKNNLVQSGRAHDAMTD 177 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V ATLAL + + +++ Y D+ +K + +D + +FG R + Sbjct: 178 VEATLALARRLSG-QKRMWNYCLDFFDKKNDQARLDAVD----EVFQSIFGRHRLCIMVS 232 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 Y V+ S L K L G P +++ + Sbjct: 233 VSFGSDLTYMAPVLSLGHSTPYANQSLWLR--LDKELVLPFKPDSGDGPFVLRKRYGEAK 290 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ- 359 +L +D + H+ C +N+ +L+ + + + D+D Sbjct: 291 IVLPSLD---RFWNRLTPSQHQVCEKNIAMLKANQDEFQKLVIHHRSFKYPFVPDLDLDA 347 Query: 360 --LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 DGFF+ V+++ M R + R+ L R RNF + + + Sbjct: 348 SLYQDGFFSSVEKKEMGVFHRAINNGEMGVCETLVSPRVKGLAQRIVLRNFYEQAAPEVR 407 Query: 418 ---QDWLEHRKKMLTRSRIEEYK-----------NKLQSLSGEYKGDEGKEGLINALYEY 463 ++ + L ++ Y+ +L S+ D ++ +++ L + Sbjct: 408 AGHDRYMVKIRGPLGDDPVKGYRNDLKFTCDMAAQELASVRSAQGLDADQKAILDWLDAH 467 Query: 464 LQWV 467 ++ + Sbjct: 468 IKSM 471 >gi|325276504|ref|ZP_08142261.1| exonuclease I [Pseudomonas sp. TJI-51] gi|324098364|gb|EGB96453.1| exonuclease I [Pseudomonas sp. TJI-51] Length = 355 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 211/353 (59%), Gaps = 13/353 (3%) Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G SRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +DV Sbjct: 1 QGGTSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDVR 59 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVHVSG F A+R+ ++ P Sbjct: 60 ATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHVSGRFSAARNYLGVVLP 117 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301 +AWHP ++++I C+L + + L +RL+T H++L G +PVP+K V +N+CP Sbjct: 118 LAWHPHNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEDLADGELPVPLKLVQINRCP 177 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +L P+ + +R GID L QQ +D+ + IY K + S+D + QL Sbjct: 178 VLAPLSVLRPADQQRLGIDLTLLQSRGEQLADQQAQWQDKLEHIYGKDDFAPSEDPEQQL 237 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y+GF D DR++ +++ P QL F D RLPEL FRYRARNFP TL+ +E+Q W Sbjct: 238 YNGFIGDRDRRLCEQVRALEPAQLGRGQWLFDDPRLPELLFRYRARNFPDTLTPEERQRW 297 Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 ++ L++ + +++ L + DE ++ A + + + Sbjct: 298 YAFCQQRLSQPQWGAPNTLGDFEQA--RLQAWERADEAGRRVLEAWQVHARNL 348 >gi|145629537|ref|ZP_01785335.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21] gi|144978380|gb|EDJ88144.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21] Length = 244 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 133/226 (58%), Positives = 165/226 (73%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D +MTPLVHVSGM Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGM 231 >gi|254374578|ref|ZP_04990059.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548] gi|151572297|gb|EDN37951.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548] Length = 482 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 115/498 (23%), Positives = 190/498 (38%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177 NG SR DL ++ Y F + + WP D TS KL++L N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ + K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQNYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|332678483|gb|AEE87612.1| Exodeoxyribonuclease I [Francisella cf. novicida Fx1] Length = 482 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 115/498 (23%), Positives = 191/498 (38%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDFDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177 NG SR DL ++ Y F + + WP D TS KL++L N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|208779832|ref|ZP_03247176.1| exonuclease family protein [Francisella novicida FTG] gi|208744287|gb|EDZ90587.1| exonuclease family protein [Francisella novicida FTG] Length = 482 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 110/498 (22%), Positives = 185/498 (37%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y F + + WP D + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGNRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 VFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|213850284|ref|ZP_03381182.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 225 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 134/215 (62%), Positives = 163/215 (75%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADV Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 YAT+A+ L++ ++P+LF+YLY +R+K++L LID Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALID 223 >gi|254373125|ref|ZP_04988614.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida GA99-3549] gi|151570852|gb|EDN36506.1| exodeoxyribonuclease I [Francisella novicida GA99-3549] Length = 482 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 110/498 (22%), Positives = 185/498 (37%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y F + + WP D + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 VFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|241668749|ref|ZP_04756327.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877280|ref|ZP_05249990.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843301|gb|EET21715.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 482 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 115/493 (23%), Positives = 186/493 (37%), Gaps = 47/493 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177 NG SR DL ++ Y F D ++WP D S KL++L N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQRKISLKLENLNTENNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM---------TPLVHVSG 228 DV T+ L +R PK++++L NK + N+ + VSG Sbjct: 183 ITDVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLNIGVEVGGIGYRQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 +FG + + I + H YK+ I L DS + Sbjct: 243 VFGFKNNFMSAILDIGQHRHYKNQEIFLRL----------DSYDFKDFIEEFGSLEAEHW 292 Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348 + + + P+++P N +R + F + Sbjct: 293 RLTVNK-KWGDIPLILPAKTRFVGRLP--QDRLDLIKTNKEFIRSNPEIFANFVDYVLEY 349 Query: 349 YTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405 ++VD F + D + D+ + Q + + + R Sbjct: 350 KYPEIENVDIDAAIYQSDFMSAADERGCDKFHTSQIYQKAQMLNQLPKP-YYDRAVRIIG 408 Query: 406 RNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGEYKGDE 451 R L +K + ++ ++ K++ TR +E+ ++Q L E Sbjct: 409 RLDFSKLPDKAQMEFQDYLNKIVSLDNDELLIDHKGKTRKTLEDIYQEMQDLRMNRDLTE 468 Query: 452 GKEGLINALYEYL 464 ++ L+ L EYL Sbjct: 469 EQQALLYELEEYL 481 >gi|134302180|ref|YP_001122149.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|134049957|gb|ABO47028.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418] Length = 482 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 110/498 (22%), Positives = 185/498 (37%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y F + + WP D + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|118497767|ref|YP_898817.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida U112] gi|194323739|ref|ZP_03057515.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] gi|118423673|gb|ABK90063.1| exodeoxyribonuclease I [Francisella novicida U112] gi|194322103|gb|EDX19585.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] Length = 482 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 110/498 (22%), Positives = 184/498 (36%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y F + + WP D + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 VFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMNMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|56708263|ref|YP_170159.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis SCHU S4] gi|110670734|ref|YP_667291.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC198] gi|224457383|ref|ZP_03665856.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis MA00-2987] gi|254370748|ref|ZP_04986753.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC033] gi|254875083|ref|ZP_05247793.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis MA00-2987] gi|56604755|emb|CAG45833.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis SCHU S4] gi|110321067|emb|CAL09216.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC198] gi|151568991|gb|EDN34645.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC033] gi|254841082|gb|EET19518.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis MA00-2987] gi|282159490|gb|ADA78881.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis NE061598] Length = 482 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 109/498 (21%), Positives = 185/498 (37%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R+D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRIDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y F + + WP D + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L + PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLIAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|254369135|ref|ZP_04985147.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica FSC022] gi|157122085|gb|EDO66225.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica FSC022] Length = 482 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 109/498 (21%), Positives = 184/498 (36%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSR-----DDGATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y F + + WP + + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|332184270|gb|AEE26524.1| Exodeoxyribonuclease I [Francisella cf. novicida 3523] Length = 482 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 112/498 (22%), Positives = 189/498 (37%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177 NG SR DL ++ + F D ++WP D S KL++L N AHDA Sbjct: 123 KNGCSRADLFPIVTCYHLFCNDVLKWPKILDEEGQQKISLKLENLNTENNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM---------TPLVHVSG 228 DV T+ L ++ PK++++L NK + ++ + VSG Sbjct: 183 ITDVIVTVELAKKLKIANPKMWQFLLTKFNKQNDENTLAQLDIGLEIGSVGYRQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG + + I + H YK+ I L S + F L++ L + Sbjct: 243 VFGFKNNFMSAILDIGQHRHYKNQEIFLRLDSYLFSEFIEEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + P+++P N ++ + F Sbjct: 303 I----------------PLILPAKTRFVGRLP--QDRLDLIKSNKEFIKDNQEIFANFVD 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D F + D + D+ Q + + + + Sbjct: 345 YVLEYKYPEIENIDIDAAIYQSDFMSAADERGCDKFHSLPIRQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L +K + ++ ++ K++ TR +E+ ++Q L Sbjct: 404 VRIIGRLDFSKLPDKAQMEFQDYLNKIVSLDNNELLIDHKGKTRKTLEDIYQEMQDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 E ++ L+ L EYL Sbjct: 464 RNLTEEQQSLLYELEEYL 481 >gi|89256131|ref|YP_513493.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica LVS] gi|115314604|ref|YP_763327.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica OSU18] gi|156502153|ref|YP_001428218.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009834|ref|ZP_02274765.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica FSC200] gi|254367455|ref|ZP_04983481.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica 257] gi|290953267|ref|ZP_06557888.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica URFT1] gi|295313509|ref|ZP_06804104.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica URFT1] gi|89143962|emb|CAJ79183.1| Exodeoxyribonuclease I [Francisella tularensis subsp. holarctica LVS] gi|115129503|gb|ABI82690.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica OSU18] gi|134253271|gb|EBA52365.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica 257] gi|156252756|gb|ABU61262.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00] Length = 482 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 109/498 (21%), Positives = 184/498 (36%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A G+ E + R+IH+ + P T IGYN + FDD R FY+N Y + Sbjct: 64 ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSR-----DDGATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y F + + WP + + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFIE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|167626316|ref|YP_001676816.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596317|gb|ABZ86315.1| Exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 482 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 114/493 (23%), Positives = 187/493 (37%), Gaps = 47/493 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A Sbjct: 5 QTFLFYDSETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177 NG SR DL ++ Y F D ++WP D S KL++L N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQPKISLKLENLNTENNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM---------TPLVHVSG 228 DV T+ L +R PK++++L NK + ++ + VSG Sbjct: 183 ITDVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLDISVEVGGIGYRQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 +FG + + I + H YK+ I L DS + Sbjct: 243 VFGFKNNFMSAILDIGQHRHYKNQEIFLRL----------DSYDFKDFIEEFGSLEAEHW 292 Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348 + + + P+++P N +R + F + Sbjct: 293 RLTVNK-KWGDIPLILPAKTRFVGRLP--QDRLDLIKTNKEFIRSNQEIFANFVDYVLEY 349 Query: 349 YTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405 ++VD F + D + D+ + Q + + + + R Sbjct: 350 KYPEIENVDIDAAIYQSDFMSAADERGCDKFHTSQIYQKAQMLNQLP-KSYYDRAVRIIG 408 Query: 406 RNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGEYKGDE 451 R L +K + ++ ++ K++ TR +E+ ++Q L E Sbjct: 409 RLDFSKLPDKAQMEFQDYLNKIVSLDNDELLIDHKGKTRKTLEDIYQEMQDLRMNRDLTE 468 Query: 452 GKEGLINALYEYL 464 ++ L+ L EYL Sbjct: 469 EQQALLYELEEYL 481 >gi|187931547|ref|YP_001891531.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica FSC147] gi|187712456|gb|ACD30753.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica FSC147] Length = 482 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 107/498 (21%), Positives = 183/498 (36%), Gaps = 57/498 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + YD ET G + + D+ QFA +R + +IE FF K D +P P A Sbjct: 5 QTLLFYDLETSGINNSFDQVLQFAAIRTYLDFNEIERFN-FFVKLNPDTMPSPMATITHH 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + Sbjct: 64 ISIAQ-SNTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177 NG SR DL ++ Y + + WP D + N AHDA Sbjct: 123 KNGCSRADLFPIVTCYYLLCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228 DV T+ L +R PK++++L NK + + + VSG Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283 +FG+ + + I + H YK+ I L S + F L++ L + Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302 Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 + PI++P + + N +R F Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344 Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + +++D+ F + D + D+ A Q + + + + Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446 R R L K + ++ ++ K++ TR +E+ +++ L Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463 Query: 447 YKGDEGKEGLINALYEYL 464 Y E ++ L+ L EYL Sbjct: 464 YDLTEEQQALLYELEEYL 481 >gi|297519534|ref|ZP_06937920.1| exonuclease I [Escherichia coli OP50] Length = 213 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 130/213 (61%), Positives = 157/213 (73%), Gaps = 6/213 (2%) Query: 1 MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P AV ITGITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 HDA ADVYAT+A+ L++ ++P+LF+YL+ +RN Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 213 >gi|226330550|ref|ZP_03806068.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198] gi|225201345|gb|EEG83699.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198] Length = 274 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 121/274 (44%), Positives = 176/274 (64%), Gaps = 2/274 (0%) Query: 198 LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCN 257 +F+Y ++ R+K +++ LIDI MTP+VHVSGMFGA+RSN +L+AP+AWHP +++VI C+ Sbjct: 1 MFDYFFNLRDKRKVQALIDIPAMTPIVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCD 60 Query: 258 LSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 LS D+ L S QL +RL+T EL PVPIK +H+NKCPI+ P + + + +R Sbjct: 61 LSADISPLLTLTSDQLRERLYTPRSELAVDEPPVPIKLLHINKCPIVAPQNTLRPQDADR 120 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYDGFFADVDRQIMDR 375 G+D CL N +L +R++ ++ + S DVDSQ+Y+GFF++ DR M+ Sbjct: 121 IGLDVDTCLNNQAILFSHPEIRNKVVELFAQQTPFVVSDDVDSQIYNGFFSENDRSAMEI 180 Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435 I T P+ L L+L F D R+ LFFRYRARN+P TL+ E+Q WL HRK+MLT ++ E Sbjct: 181 IRSTQPQNLPALDLTFEDARMEPLFFRYRARNYPSTLNYDEQQRWLAHRKEMLTPEKLNE 240 Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 Y N +Q L+ +Y +E K + LY Y Q + Sbjct: 241 YINTIQLLAEKYSDNEEKLKQLQELYLYAQDIAS 274 >gi|162148670|ref|YP_001603131.1| exodeoxyribonuclease I [Gluconacetobacter diazotrophicus PAl 5] gi|161787247|emb|CAP56840.1| putative exodeoxyribonuclease I [Gluconacetobacter diazotrophicus PAl 5] Length = 437 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 90/439 (20%), Positives = 158/439 (35%), Gaps = 24/439 (5%) Query: 35 EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV-EAEFSRRIHQFFSVPNT-C 92 ++ E + LP P A+ G++ + + I + + Sbjct: 2 NEVARFEA-RSRLQPHVLPHPSALRTNGLSIESLTDTNLPSHYAMVGDIRRILMSWSPAV 60 Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152 +G+N+IRFD+ R+ ++ Y +Y S R D L ++ A A SP + P + Sbjct: 61 FVGFNSIRFDEEMLRHALFQCLYPAYLTSNHRNC-RADALSLVMAADAVSPAQLVVPVSE 119 Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 +G +F+LQ LA ANG+ H AHDA +DV AT+ L L+ ++ P L++ + NK + Sbjct: 120 EGRRTFRLQQLAAANGLVHARAHDAMSDVLATIELCRLVHQRSPDLWQRFVRFSNKATVS 179 Query: 213 KLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQ 272 +D ++ V F ++ A + + P + + +L D+ + V+ Sbjct: 180 DFVDAEDG----FVLTEFYGGQAYHAPVVCIGVDPDQANGRLCLSLYHDVGQLARMSDVE 235 Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332 L L P PI+ +N P L + + I H Sbjct: 236 LQAHL--------AQKPSPIRRFRINAAPTLTAFFDAPEHMLDGGSIGHIEDQARRVKAD 287 Query: 333 QQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392 R I + S ++ ++Y+GF D M+ + + ++ Sbjct: 288 ADLCTRLVAAYIAAREPYPLSPHLEERIYNGFPGPDDEGRMNAFHQVSWPDRLSIVQSLE 347 Query: 393 DRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEY 447 D RL R L K + L E + L G+ Sbjct: 348 DERLRWFGLRLVYFEARRVLPATVKVEIERRLANQLAGDGSGCLTYELALAETNKLMGQQ 407 Query: 448 KGDEGKEGLINALYEYLQW 466 +G L+ YLQ Sbjct: 408 TDHDG---LLARYRIYLQD 423 >gi|226330549|ref|ZP_03806067.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198] gi|225201344|gb|EEG83698.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198] Length = 204 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 121/197 (61%), Positives = 145/197 (73%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ F I+DYETFG ALDRPAQFAG+R D + IE V +CKP DDYLP PEAV IT Sbjct: 7 TSTFYIHDYETFGTHPALDRPAQFAGIRTDMDFNIIEDPLVIYCKPNDDYLPHPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ A ++G++EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S Sbjct: 67 GITPQIAAKNGLIEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W GNSRWDLLDV+RA YA P+GI WP +DG SF+L+ L ANGI H NAHDA +DV Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIVWPENEDGFPSFRLELLTKANGISHENAHDAMSDV 186 Query: 182 YATLALVWLIREKKPKL 198 YAT+A+ I Sbjct: 187 YATIAMAKKIETSSTAY 203 >gi|289804761|ref|ZP_06535390.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 321 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 145/281 (51%), Positives = 199/281 (70%), Gaps = 1/281 (0%) Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 +FYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANG Sbjct: 1 MFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANG 60 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 IEH NAHDA ADVYAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSG Sbjct: 61 IEHSNAHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSG 120 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 MFGA R NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L Sbjct: 121 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHA 180 Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK- 347 VP+K VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + Sbjct: 181 AVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEA 240 Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388 ++S +VD+QLYDGFF+D DR M +L T P L L+ Sbjct: 241 EPFATSDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALD 281 >gi|289677836|ref|ZP_06498726.1| exonuclease I [Pseudomonas syringae pv. syringae FF5] Length = 295 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 105/265 (39%), Positives = 162/265 (61%), Gaps = 4/265 (1%) Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 H AHDA +DV AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F Sbjct: 1 HGQAHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRF 58 Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289 A+R+ ++ P+AWHP ++++I C+L D + L +RL+T HD L G +P Sbjct: 59 SAARNYLGVVLPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELP 118 Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKP 348 VP+K +H+N+CP++ P+ + E +R +D L ++ D+ A+Y K Sbjct: 119 VPLKLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKD 178 Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408 +S+D + QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNF Sbjct: 179 DFVASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNF 238 Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRI 433 P TLS +E+ W + ++ L Sbjct: 239 PDTLSGEEQTRWRDFCQQRLRSPEW 263 >gi|60326832|gb|AAX18929.1| putative exonuclease I [Pseudomonas fluorescens] Length = 278 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 156/276 (56%), Gaps = 12/276 (4%) Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259 ++L+ R+K ++ + + + P+VH+SG F A+R +I P+AWHPR ++++I C+L Sbjct: 1 DWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVILPLAWHPRNRNALIVCDLH 58 Query: 260 GDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318 D + +LD+ L +RL+T ++L +G +PVP+K +H+N+CP++ P+ + E +R Sbjct: 59 LDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPVVAPLSVLRSEDQQRLH 118 Query: 319 IDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRIL 377 +D + L + RD+ IY ++S D + QLYDGF AD DR++ +++ Sbjct: 119 LDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLYDGFIADRDRRLCEQVR 178 Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS------ 431 P L+ PF D RLPEL FRYRARNFP TL++ E++ WL ++ L Sbjct: 179 EADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERWLVFCQQRLLDPQLGAPN 238 Query: 432 RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 +E ++ L+ D + +++ +Y+Q + Sbjct: 239 TLESFRQGLEQ--SLLSADPVQRQVLDQWQDYVQAL 272 >gi|134082476|emb|CAK97283.1| unnamed protein product [Aspergillus niger] Length = 298 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 111/178 (62%), Positives = 134/178 (75%) Query: 30 VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP 89 ++ I EVF+CKPADDYLP P AV ITGITPQ+A G EA F+ RIH F+VP Sbjct: 121 FKGEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVP 180 Query: 90 NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP 149 TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP Sbjct: 181 KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP 240 Query: 150 SRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L++ ++P+LF+YL+ +RN Sbjct: 241 ENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 298 >gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] Length = 1435 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 74/475 (15%), Positives = 137/475 (28%), Gaps = 47/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + A V++ R E I++ E F Y +TGI Sbjct: 419 TYVVFDVETTGLSSVYDRIIELAAVKM-RNGEVIDTFEAF---INPGYHLSAMITELTGI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T EAE R +F I+ +N FD + + R Sbjct: 475 TDAMLADAP-PEAEVMARFAEF---SKDTILVAHNASFDMGFLNKTYARLGMPVP----- 525 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + + S +L LA G+ H A D Sbjct: 526 -DQPVIDTLELSRLV-------------NPDMRSHRLNVLAKHYGVTLEQHHRAVYDSET 571 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + ++ + + + + Q+ K + P Sbjct: 572 TGYVCYKLLDQAKEQYGMVRHEQLNEQVGKGDSYKQARPFHATLIAKNQEGLKDLFKLIS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A + +Y S + +L ++ K V L Sbjct: 632 ASNVQYFFREPRIPRSLLTKYRDNLLVGTACSNGEVFTAMMQKGYDEAEKLVDFYDYIEL 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + + +++ + +D +Y Sbjct: 692 QPKSVYGPLIETELIRSEADLETIMKEMVRLGQDKNKLVVATGDVHYLEPKDA---IYRE 748 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSEKEK 417 + +R L P ++ +D + E F R A P + Sbjct: 749 ILLRSMKINANRTLHLPP-----VHFRTTDEMMAEFDFLGRDLAYELVITNPQKI-ADMV 802 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 ++ E K L I ++ L + E GD E + + + L+ +I Sbjct: 803 EEV-EVIKDKLYTPNIPGANEEITELSYTRARELYGDPLPEIVEKRIEKELKSII 856 >gi|297519535|ref|ZP_06937921.1| exonuclease I [Escherichia coli OP50] Length = 235 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 105/234 (44%), Positives = 157/234 (67%), Gaps = 1/234 (0%) Query: 202 LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGD 261 L+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP +++VI +L+GD Sbjct: 1 LFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGD 60 Query: 262 MRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321 + +LDS L +RL+T+ +L VP+K VH+NKCP+L + + E +R GI+ Sbjct: 61 ISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 120 Query: 322 KRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTA 380 + CL+NL +LR+ +R++ AI+ + + S +VD+QLY+GFF+D DR M +L T Sbjct: 121 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETE 180 Query: 381 PEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIE 434 P L L++ F D+R+ +L F YRARNFP TL E+Q WLEHR+++ T ++ Sbjct: 181 PRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQ 234 >gi|213859584|ref|ZP_03385288.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 228 Score = 170 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 152/228 (66%), Gaps = 1/228 (0%) Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP Sbjct: 1 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 60 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360 +L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL Sbjct: 61 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 120 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W Sbjct: 121 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 180 Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 181 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 228 >gi|153872365|ref|ZP_02001281.1| Exodeoxyribonuclease I [Beggiatoa sp. PS] gi|152071166|gb|EDN68716.1| Exodeoxyribonuclease I [Beggiatoa sp. PS] Length = 312 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 128/307 (41%), Gaps = 15/307 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M N ++ YD ET G + + QFA +R D Q+ +IE ++ K D +P P+A Sbjct: 1 MNNTYLFYDIETTGLNKTFAQILQFAAIRTDMQFNEIERHDILI-KLRPDVIPSPKATIT 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ +++ G+ E E +IH+ + T +GYN FDD + R F+RN Y Sbjct: 60 HRISIAQSM-QGLCEFEAIMQIHRLMNQSGTISLGYNTSSFDDEFLRFCFHRNLLPPYTH 118 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + +G R DLL + Y + + ++ DG + +L+ L+ N + AH+A D Sbjct: 119 QYKDGCRRSDLLPITIMYYLYKKEVLENWPEIDGKPTMRLEKLSEVNQLAIGQAHNAIVD 178 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG----------MF 230 V AT+ L + ++ PK++ YL Y +K +K + ++ + Sbjct: 179 VEATVELARRLFKE-PKMWGYLDGYFDKTTDKKKRIEELPIAFHSIACSNRMGLMIDNKY 237 Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290 G++ + + YK+ + L + + + +E Sbjct: 238 GSANQYQVPVLLIGHSIPYKNQTLWLRLDNP--NLSKIQKQDIPSETSSVEEEKNFSKNS 295 Query: 291 PIKEVHL 297 + + Sbjct: 296 WVIRKKI 302 >gi|289677835|ref|ZP_06498725.1| exonuclease I [Pseudomonas syringae pv. syringae FF5] Length = 166 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 79/164 (48%), Positives = 95/164 (57%), Gaps = 1/164 (0%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 W GNSRWDL+DV+RA YA PDGI WP DG + KL+ L Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLT 163 >gi|226490305|emb|CAQ42995.1| exonuclease [Escherichia coli] Length = 156 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 95/150 (63%), Positives = 110/150 (73%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WS Sbjct: 67 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 W + NSRWDLLDVMRA YA P+GI WP Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPEN 156 >gi|124008030|ref|ZP_01692729.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134] gi|123986444|gb|EAY26250.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134] Length = 487 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 87/485 (17%), Positives = 160/485 (32%), Gaps = 41/485 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V YD + G + D+ + D + +E+ + K D +P PEA+ Sbjct: 21 KNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLLETHHIEIKK-RPDVVPSPEALIANN 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 P + G E E R IH+ F+ P++ +GY N+ DD R FYRN Y W Sbjct: 80 WLPSDLAK-GSTEYEAMRHIHELFNTPHSYNVGYGNLNNDDLLVRFGFYRNGLTPYTHQW 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R DL ++ Y +P+ + + G S +L D+A ANG+ + Sbjct: 139 QRSCRRVDLRTIVTLYYLQAPNALVFSKNAAGKVSLELDDIAQANGLTVGK---GATNAQ 195 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + L L+ P L+E + +K + + + G + A Sbjct: 196 TIMELAKLLHNANPMLWEQALGFFDKKEDQNRVKAAQ--------GQIEGVNGALLVDAQ 247 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + ++ V G + LD L L T + E +++ L + Sbjct: 248 LGADAGFQQPVHVLGQVGKDVHYVPLDDPDL-STLNTKNLE----SRFWVQKKKLTDEKL 302 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ--- 359 L+ + F+ N + NL + + +VD Sbjct: 303 LLNWKHRDPAVFD--AARGALIKRNAAFVANNPNLMQQLGEYVAGKSFAHRNNVDLDAQL 360 Query: 360 LYDGFFADVDRQIMDRILRTA-PEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE-KEK 417 GF+A +++ ++ + +R + R RNF H + Sbjct: 361 YQGGFWATNEKRFFAEFHEAPNAQEKMQVVNTAPTQRTAAIGQRILYRNFVHDMGALGMT 420 Query: 418 QDWLEHRKKMLTR---------------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYE 462 DW + IE + ++L + + L+ A + Sbjct: 421 TDWQRFIADSVAPVSDLATLKDYKGGRKRSIERFLADAEALLNAGGLSQHQSSLLEAWVD 480 Query: 463 -YLQW 466 + + Sbjct: 481 VFAES 485 >gi|317035770|ref|XP_001396951.2| hypothetical protein ANI_1_1434134 [Aspergillus niger CBS 513.88] Length = 177 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 110/175 (62%), Positives = 133/175 (76%) Query: 32 RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 ++ I EVF+CKPADDYLP P AV ITGITPQ+A G EA F+ RIH F+VP T Sbjct: 3 GEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKT 62 Query: 92 CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 CI+GYNN+RFDD +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP Sbjct: 63 CILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 122 Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206 DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L++ ++P+LF+YL+ +R Sbjct: 123 DDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHR 177 >gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] Length = 1450 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 138/474 (29%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPE------ 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R +Y F L L+ G+ H A D A Sbjct: 530 ATNPVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +DV +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDV---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] Length = 1450 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 136/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|330937753|gb|EGH41635.1| exonuclease I [Pseudomonas syringae pv. pisi str. 1704B] Length = 136 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 65/136 (47%), Positives = 79/136 (58%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNSRWDLLDVMR 136 W GNSRWDL+DV+R Sbjct: 121 EWQGGNSRWDLIDVLR 136 >gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] Length = 1450 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 70/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPE------ 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R +Y F L L+ G+ H A D A Sbjct: 530 ATNPVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] Length = 1450 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 136/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] Length = 1450 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] Length = 1450 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] Length = 1450 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 1450 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 68/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ + + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGIEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] Length = 1450 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + R Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + + Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861 >gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] Length = 1452 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E R +F I+ +N FD + + R+ Sbjct: 482 TDGMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARHGIPEAAN--- 534 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 535 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 579 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 639 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 699 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 755 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + + Sbjct: 756 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 809 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 810 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLKKELNSI 863 >gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68] gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68] gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] Length = 1452 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 136/474 (28%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E R +F I+ +N FD + + R Sbjct: 482 TDGMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 534 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 535 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 579 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V S ++ ++L + ++ V + Sbjct: 639 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E + L + D+ + + +D +Y Sbjct: 699 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 755 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + P+ ++ +D L F + + + + Sbjct: 756 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 809 Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K L +I ++++ L + + GD E + L + L + Sbjct: 810 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLKKELNSI 863 >gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46] Length = 1436 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ + + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMQELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ST398] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 1442 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 481 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 578 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 637 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 638 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 696 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 805 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 806 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 861 >gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21193] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2] gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476] gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. Newman] gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132] gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus MW2] gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MSSA476] gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus str. Newman] gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01] gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131] gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21189] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252] gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MRSA252] gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] Length = 1442 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HDGEIIDKFERFS---NPHERLSETIINLTHI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 578 TAYIFIKMVQQMKELGVNNHNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 638 SLVQYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQKDQSEVEKIAKYYDFIE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + +E L + + ++ + Sbjct: 696 VQPPALYQDLMDRELIRDKETLIEIYKRLIEAGESANI----PVIATGNAHYLYEHDAIA 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEEKAHEIVVKNTNELAD 805 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E ++++ L + + G++ + +I+ L + L +I Sbjct: 806 RIERVVPIKDKLFTPRMEGANDEIRELSYSNAKKLYGEDLPQIVIDRLEKELASII 861 >gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus JKD6159] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus TW20] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL] gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754] gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus] gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus COL] gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754] Length = 1436 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50] gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315] gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9] gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1] gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3] gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1] gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus N315] gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus aureus subsp. aureus JH9] gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu3] gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981] gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03] gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21172] Length = 1438 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYTNARKLYGEDLPQIVIDRLEKELKSII 857 >gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1436 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 1436 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus ED133] Length = 1436 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796] gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796] Length = 1436 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYTNARKLYGEDLPQIVIDRLEKELKSII 855 >gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] Length = 1438 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKFYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus] Length = 1435 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] Length = 1442 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + +I++ K + K + + + ++ +++ Sbjct: 578 TAYIFIKMIQQMKELGVLNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQKDQSEVEKIAKYYDFIE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + DH+ E L + + + + Sbjct: 696 VQPPALYQDLMDRELIRDHETLTEIYQRLIEAGESANI----PVIATGNVHYLYEHDAIA 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + + Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEEKAHEIVVRNTNELAE 805 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E ++++ L + + G++ + +I+ L + L +I Sbjct: 806 RIERVVPIKDKLFTPRMEGANDEIRELSYSNAKKLYGEDLPQIVIDRLEKELASII 861 >gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] Length = 1438 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 143/476 (30%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + +I++ + K + + + ++ +++ Sbjct: 574 TAYIFIKMIQQMTELGVHNHNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQKDQAEVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ E L + + + ++ + Sbjct: 692 VQPPALYQDLMDRELIRDNETLTEIYQRLIEAGDSVNI----PVIATGNAHYLYEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + + + + + + Sbjct: 748 RKILIASQPGNPLNRTTLPE----AHFRTTDEMLDE--FHFLGEEKAYEIVVKNTNELAE 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E ++++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDKLFTPRMEGANDEIRELSYSNAKKLYGEDLPQIVIDRLEKELESII 857 >gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11] Length = 1436 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRGLIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus] Length = 1415 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855 >gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435] gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus JCSC1435] Length = 1438 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V + E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPHEKLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D + Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTES 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K D K T + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVTNHKDINQKLSNEDAYKRARPTHVTLIVQTQEGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E + + I ++ + Sbjct: 692 VQPPKLYQDLIDRELIRDTETLYEIYERILKAGES----TGIPVIATGNAHYLYEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 802 RIEKVIPIKDQLFTPRMDGANEEIRELSYTNAKKLYGEDLPQIVIDRLEKELASII 857 >gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122] gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122] Length = 1438 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G ++ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYNKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNQDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L I ++ + Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + H + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L+ +I Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857 >gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5] gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5] Length = 1439 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3] gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3] gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704] Length = 1439 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96] Length = 1439 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU121] Length = 1438 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 137/476 (28%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHEKLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----DVLTDFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G++ H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVDLTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K D K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVTNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSE 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVTYYYRTPRIPRSLLNEYREGLLVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L + + ++ + Sbjct: 692 VQPPALYQDLIDRELIRDTETLHEIYHRLIEAGKSANI----PVIATGNAHYLYEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L EL + + L + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDEL--HFLGEEKAYELVVTNTNALAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 802 RIERVVPIKDKLYTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857 >gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1] gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1] gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1] gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1] gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 1439 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6] Length = 1439 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] Length = 1451 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027] Length = 1451 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis] Length = 1439 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2] gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2] Length = 1439 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11] gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11] Length = 1439 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188] gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188] Length = 1439 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850 >gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] Length = 1451 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000] gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141] gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244] gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031] gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043] gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312] gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645] gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341] gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346] gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis 62] gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF] gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467] Length = 1451 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137] Length = 1451 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017] Length = 1451 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU144] Length = 1438 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGLLIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857 >gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302] Length = 1451 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012] Length = 1451 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342] Length = 1451 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] Length = 1451 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630] Length = 1451 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583] gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis V583] gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B] gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A] Length = 1451 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] Length = 1451 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IE+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + ++ Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L L+ G+ H A D + Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ V + Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + E ++ L + + + + + +D +Y Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416 + P ++ +D L E R N K Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 805 Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862 >gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU028] gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU045] Length = 1438 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857 >gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228] gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] Length = 1442 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 578 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 696 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 805 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 806 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 861 >gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] Length = 1438 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857 >gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] Length = 1442 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 578 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 696 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 805 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 806 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 861 >gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A] gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis RP62A] gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] Length = 1436 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 475 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 572 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 632 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 690 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 800 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 855 >gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] Length = 1438 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 68/476 (14%), Positives = 139/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHEKLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----DVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGF-------- 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G S ++D + + D + L LA G++ H A D A Sbjct: 525 -GPSTNGVIDTLELSRTINTDYGK----------HGLNFLAKKYGVDLTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K D K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVTNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSE 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVTYYYRTPRIPRSLLNEYREGLLVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E L + + ++ + Sbjct: 692 VQPPALYQDLIDRELIRDTETLHEIYHRLIEAGKSANI----PVIATGNAHYLYEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L EL + + L + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDEL--HFLGEEKAYELVVTNTNALAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 802 QIERVVPIKDKLYTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857 >gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] Length = 1442 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 578 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 696 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLFEHDAIA 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 805 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 806 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 861 >gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] Length = 1438 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 143/476 (30%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V + E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPHEKLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K D K T + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVANHKDINKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E + + I ++ + Sbjct: 692 VQPPKLYQDLIDRELIRDTETLYEIYDRILKAGES----TGIPVIATGNAHYLFEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + + + + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEDKAYDIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R+E +++ L + + GD+ + +I+ L + L +I Sbjct: 802 RIEKVIPIKDQLFTPRMEGANEEIRELSYTNAKKLYGDDLPQIVIDRLEKELDSII 857 >gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis FRI909] Length = 1438 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K + K + + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ + L + I ++ + Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLFEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L + F + + + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R++ +++ L + + G++ + +I+ L + L +I Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857 >gi|146344350|ref|YP_001202206.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25] gi|146188162|emb|CAM96493.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25] Length = 465 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 81/455 (17%), Positives = 145/455 (31%), Gaps = 13/455 (2%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M YD T G+ A + ++ + + D D EA Sbjct: 1 MPLAIHFYDAITAGKSPAEGQIVRYDSLMCEESLTP--QVMEMMVGLRSDVHVDLEAAA- 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 L G E E +R +H+ F+ PN IG N D + R+ FYRN Sbjct: 58 NSELGSMDLLSGHSELECARTVHRHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLLPFPCI 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + DL ++RAI PD W D + + + Sbjct: 118 GLPGNSYYLDLETMLRAINILRPDEYPWADSPDPTNTQSFHHFLMWGANVSGENRAVRLR 177 Query: 181 ---VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 + L+ + ++ D+++ TP+ V A + Sbjct: 178 DLLADTHASCPKLVGHALKHSSLQSIKSALGLEQGEVSDLESATPVYLVHQSLQAPKGFI 237 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 L PV Y D + +L D+ + + G P+ + L Sbjct: 238 -LGLPVGVDITYPDILYVADLESDISQLCNPAITSYQSFVRNPSSNPNG----PLVRISL 292 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 ++ P P+ + R ID + LR T L R K +S DV Sbjct: 293 SRFPFCAPLSAIRPADAARLSIDIGLVKRRIAQLRSATLLPSRLKETPVLHLSSQPSDVF 352 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 +++ G F+ D+ +M + + + L + SD R+ EL R P L+ ++ Sbjct: 353 HRMWAGDFSPKDQVLMQELHQAPMGEWLNLAVGASDGRIYELVVRLLGGIAPEILTSDQR 412 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEG 452 + + + +++ + L + + Sbjct: 413 SEVDGYTQSRFSKNSAPPLW--VAELLKQAQDGNE 445 >gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] Length = 1438 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 144/476 (30%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V + E I+ E F + + +T I Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPNEKLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I +N FD + + R + Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K D K T + + ++ +++ Sbjct: 574 TAYIFIKMVQQMKELGVANHKDINKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + E + + I ++ + Sbjct: 692 VQPPKLYQDLIDRELIRDTETLYEIYDRILKAGES----TGIPVIATGNAHYLFEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L E F + + + + + + Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEDKAYDIVVKNTNELAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L R+E +++ L + + GD+ + +I+ L + L +I Sbjct: 802 RIEKVIPIKDQLFTPRMEGANEEIRELSYTNAKKLYGDDLPQIVIDRLEKELDSII 857 >gi|257486438|ref|ZP_05640479.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 127 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 58/127 (45%), Positives = 71/127 (55%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDNGNS 127 W GNS Sbjct: 121 EWQGGNS 127 >gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] Length = 1435 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 66/476 (13%), Positives = 140/476 (29%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V + E I+ E F +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-KNGEIIDKFERFS---NPHEKLTETIKNLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F + I +N FD + + R + Sbjct: 475 TDDMLKDAPEIE----EVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N+ D L++ R I L LA G+E H A D A Sbjct: 525 STNAVIDTLELSRTINTSY-------------GKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++ + K D K + + ++ +++ Sbjct: 572 TAYIFVKMLAQLKALDVHNHQDINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + +FT ++ + Sbjct: 632 SLVQYYYRTPRIPRSLLDEHREGLLIGTACDEGEVFT--AVMQRDQSEVERIAKYYDYIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ +E + + ++ + Sbjct: 690 VQPPALYQDLLDRDLIRDNETLVEIYERILKVGETNQI----PVIATGNAHYLHEHDAIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L F + H + + + Sbjct: 746 RRILIAAQPGNPLNRSTLPE----AHFRTTDEMLD--AFHFLGEERAHQIVVENTRALAE 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L +E +++ + + + G+E + +I+ L + L+ +I Sbjct: 800 RIEKVVPIKDKLYTPNMEGANEEIREMSYRHAKQLYGEELPQIVIDRLEKELESII 855 >gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus pseudintermedius ED99] Length = 1435 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 65/476 (13%), Positives = 138/476 (28%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V + E I+ E F +T I Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-KNGEIIDKFERFS---NPHEKLTETIKNLTHI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F + I +N FD + + R + Sbjct: 475 TDDMLKDAPEIE----EVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPSAN--- 527 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R I L LA G+E H A D A Sbjct: 528 ---AVIDTLELSRTINTSY-------------GKHGLNFLAKKYGVELTQHHRAIYDTEA 571 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++ + K D K + + ++ +++ Sbjct: 572 TAYIFVKMLAQLKALDVHNHQDINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVSA 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + +FT ++ + Sbjct: 632 SLVQYYYRTPRIPRSLLDEHREGLLVGTACDEGEVFT--AVMQRDQSEVERIAKYYDYIE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ +E + + ++ + Sbjct: 690 VQPPALYQDLLDRDLIRDNETLVEIYERILKVGETNQI----PVIATGNAHYLHEHDAIA 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T PE + +D L F + H + + + Sbjct: 746 RRILIASQPGNPLNRSTLPE----AHFRTTDEMLD--AFHFLGEERAHQIVVENTRALAE 799 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L +E +++ + + + G+E + +I+ L + L+ +I Sbjct: 800 RIEKVVPIKDKLYTPNMEGANEEIREMSYRHAKQLYGEELPQIVIDRLEKELESII 855 >gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] Length = 1439 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 136/477 (28%), Gaps = 51/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + I++ E F + +TGI Sbjct: 422 TYVVFDVETTGLSAIYDNIIELAAVKM-QNGNVIDTFEEF---INPGRPLSATIIDLTGI 477 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E ++ I +N FD + + R+ ++ Sbjct: 478 TDAMLANT-RTEKEVISDFREWV---GDAIFVAHNASFDMGFIDTAYNRHGFE------K 527 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N+ D L++ R ++ S +L LA + H A D Sbjct: 528 SHNAVIDTLEMSRFLH-------------PNLKSHRLNTLAKRYNVALEQHHRAVYDAET 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T AL W+ ++ E Y + K + P V + Sbjct: 575 TGALAWIFIKEAAADHEIFYHDELNKDVGKGDAYKQGRPFHAVLLAKNQTGLKDLFKLVS 634 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A + Y V S ++L ++ K+ L Sbjct: 635 ASNIDYYYRVPRIPRSLLSSHRENLLVGSACAGGEVFEALMQKGKVEAEKKAAFYDYLEL 694 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P K + D + + + + ++ A + Y + + ++ Sbjct: 695 QPKGVYKPLILDELIQDEATLEKIMKDMLEIGESVNKPVVATGDVHYLNEEDKLYREILI 754 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 + + E+ L E F + + + + Sbjct: 755 NSIKSNRTKNFPEAHFRSTEE-----------MLQEFAF--LGEETAYQIVVENSNAIAD 801 Query: 423 HR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE + +L + + E G E E + L + L+ +I Sbjct: 802 SIEFVEPLKDKLYTPTIEGAEQELTDMSFEKAHEIYGKELPEIVEARLDKELKSIIS 858 >gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] Length = 1440 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 68/478 (14%), Positives = 134/478 (28%), Gaps = 53/478 (11%) Query: 4 HFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V++ + IE+ E F + + +TG Sbjct: 413 TYVVFDVETTTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTG 468 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E E R +F I+ +N FD + + ++ Sbjct: 469 ITDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN-- 522 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L++ R +Y S +L L+ G+ H A D Sbjct: 523 ----PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSE 565 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 +T L W+ ++ + + + + + + P + Sbjct: 566 STGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLI 625 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V S ++ + L ++ V Sbjct: 626 SMSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIE 685 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP + + E ++ L + + + + + +D +Y Sbjct: 686 VMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYR 742 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415 + P ++ +D L E R N K Sbjct: 743 KILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNK 793 Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 E K L +I + ++ L + E GD E + L + L + Sbjct: 794 VADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 851 >gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] Length = 1435 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 73/474 (15%), Positives = 141/474 (29%), Gaps = 43/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V++ ++ + I++ E F + +TGI Sbjct: 419 TYVVFDVETTGLSSVYDKIIELAAVKM-KEGQVIDTFEAF---INPNQPLSSFTTELTGI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + + F I+ +N FD + + R ++ Sbjct: 475 TNAMVEDAPQ-EDVVLKDFYDF---SQNTILVAHNASFDIGFLNKGYERIGIEN------ 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + + S +L LA G+ H A D Sbjct: 525 TPLPVIDTLELSRMV-------------NPHLKSHRLNTLAKRYGVNLEQHHRAVYDSET 571 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L++ + ++ F Y ++ NQL + + P+ + Sbjct: 572 TGYLMYKLLDQALADFGMEYHHQLNNQLGQGDAFKQARPMHATLLVKEQDGLKDLFRLVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S + Q L ++ + + Sbjct: 632 ESNIHYYHRVPRVPRSILNKYRQHLLVGTACSEGEVFTAMMQKGYDEAKELAKYYDFIEI 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + K E + L ++ +V Sbjct: 692 MPKGAYLPLLHDENIHSEKELEEIIANL--------YRMGKELNKPVVATGNVHYLDEKD 743 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDWL 421 Q +I ++ L ++ +D L E F A T S+ Sbjct: 744 AIYREVVQRSLKINQSRDLVLPQVHFRTTDEMLDEFAFLGEEIAYEVVVTNSQAIADSIE 803 Query: 422 --EHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + K L RIE ++++ L + E G + E + + + L +I Sbjct: 804 TIKVVKDELYAPRIEGAEDEITQLTYQRAHELYGQDLPEIVEKRIEKELNSIIN 857 >gi|330888492|gb|EGH21153.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020] Length = 124 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 55/124 (44%), Positives = 68/124 (54%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120 Query: 121 SWDN 124 W Sbjct: 121 EWQG 124 >gi|325276506|ref|ZP_08142262.1| exonuclease I [Pseudomonas sp. TJI-51] gi|324098353|gb|EGB96443.1| exonuclease I [Pseudomonas sp. TJI-51] Length = 105 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 61/105 (58%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT+ +DYET G + DRP Q AG+R D +I+ +C+PADD LP P A + Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAACLV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 TGITPQ G+ EAEF R+H + P TC GYN +RFDD Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEV 105 >gi|330959582|gb|EGH59842.1| putative exodeoxyribonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 465 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 85/458 (18%), Positives = 146/458 (31%), Gaps = 19/458 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR---QWEKIESTEVFFCKPADDYLPDPEA 57 M YD T G+ A + VR + + D D EA Sbjct: 1 MPVAIHFYDAITAGKSPAEGQI-----VRYHSLICEGSETPQFLEMMVSLRSDVHVDLEA 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 L G E E ++ +H F+ PN IG N D + R+ FYRN Sbjct: 56 AA-NSELGSMDLLSGHSELECAKTVHDHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLLPF 114 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + DL ++RAI+ PD W A + + Sbjct: 115 PCVGLPGNSHYLDLETMLRAIHILRPDEYPWADSPAPANTHSFHHFLMWGAKVSGGNRAV 174 Query: 178 KADV---YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 + + L+ ++ D+++ TP+ V + + Sbjct: 175 RLRELLEDTHASCPKLVGHAIKHSSIESIKSALGLDKGEVSDLESTTPVYLVHQSLPSPK 234 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 L PV Y D + +L D+ + + G P+ Sbjct: 235 GFL-LGLPVGVDITYPDILYVADLESDLSQLCNPSVPTYQGFVRNPTSNPNG----PLVR 289 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 V L++ P P+ + R ID + +R T L R K + S Sbjct: 290 VSLSRFPFCAPLSAIRPADASRLSIDIGLVKRRIAQIRSATFLPSRLKEVPVLQLASQPS 349 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 DV +++ G F+ D+ +M + +T + L++ SD R EL R P LS Sbjct: 350 DVFHRMWAGDFSLKDQALMRELHQTPMGKWLNLSVGASDGRFHELVVRLLGGIAPEILSS 409 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEG 452 ++ E+ + L+++ + L + + Sbjct: 410 GQRSQVDEYAQSRLSKNSPPPLW--VAELLKQAQDGNE 445 >gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC 35311] gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC 35311] Length = 1450 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 68/479 (14%), Positives = 136/479 (28%), Gaps = 54/479 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + + V++ + I++ E F + + +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELSAVKM-HKGNVIDTFEQF---INPGHPLSQTTIHLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E +F I+ +N FD + + + Sbjct: 480 TNEMVSDA-KSEKVVLNMFKKF---SENTILVAHNAAFDMGFLNTSYRKYKIPEAEN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y S +L LA G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PTLKSHRLNVLAKKFGVGLEQHHRAIYDSEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + F Y + + + P V + Sbjct: 577 TGHLCWIFLKETKEKFSMNYHDELNMHIGEGDSYKRARPFHAVIIAKTQAGLKNLFKLIS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L ++ + + + Sbjct: 637 MSNVHYFYRVPRIPRSQLNKLREGLIVGSACSSGEIFEAMMQKGIDEAERRAKFYDYIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + + E L++ L A + Y + + ++ Sbjct: 697 MPKPVYAPLIEQELIKNEEDLEEIIANLVKIGDKLGKPVVATGDVHYLNPEDAIYRKILI 756 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415 + + L + +D L E + N S K Sbjct: 757 SSMGGANPLNRHQ--------LPEVYFRTTDEMLTEFQFLGKDVAQKIIVEN-----SNK 803 Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L +I ++++++L + E GD + L + L +I Sbjct: 804 IADSCDVIIPVKDELYTPKIPGSEDEIRNLSYTRAKELYGDPLPPIVEKRLKKELNSII 862 >gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601] gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601] Length = 1470 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + +++ E F + +TGI Sbjct: 453 TYVVFDVETTGLSAVYDTIIELAAVKM-ENGQVVDTFESF---IDPGRPLSATIINLTGI 508 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + +F ++ +N FD + + + D Sbjct: 509 TDDMLKGSDDIE----TVLKRFKEWCGDAVLVAHNASFDMGFLNTAYSKAGID------K 558 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 559 AENAVIDTLELARFLYPHF-------------KNHRLNTLTKKFNIVLEQHHRAVFDAEA 605 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ E + N + + + P A Sbjct: 606 TAYLAWKLIKDANEMHEITNHNQLNNYMGEGEAYKRARPFHATIYAQNAVGLKNLFKLIS 665 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + + + Sbjct: 666 QSNINYFFRVPRIPRSQLKKLREGLIIGTACNQGELFEAMMQKGMQEAERVAEFYDFIEV 725 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E + + + A N Y + ++ Sbjct: 726 QPKPVYAPLIERELVRDEKALEEIIKNIVKVGEKTGKPVVATGNVHYKDPHDKIYRKI-- 783 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 F+ ++R +L ++ + L E F + + D Sbjct: 784 LIFSQGGANPLNR------AELPEVHFRSTSEMLEEFAF--LGEEKAEEIVVTNSNLVAD 835 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 W+E K L +IE +++++++S + E L L + L+ +I Sbjct: 836 WIEDVKPIKDELYTPKIEGAEDEVRNMSYDMAHHLYGENLPEIVEARLEKELKSII 891 >gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] Length = 1443 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 61/477 (12%), Positives = 136/477 (28%), Gaps = 47/477 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +VI+D ET G D+ + + V++ + +E + F + + +T Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKM-QDGNVLERFDEF---IDPGFPLSEQTTNLTS 479 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E E + F CII +N+ FD + + R+ Sbjct: 480 ITTEMVQGS-KTEEEVFQMFKDF---CKGCIIAGHNVAFDMGFMNTGYERHQMGKIA--- 532 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R +Y ++L L+ + + H A D Sbjct: 533 ---EPVIDTLPLARFLY-------------PDMRGYRLNTLSKKFKVALEHHHRANYDSE 576 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L++ + ++ Y + + ++ P + Sbjct: 577 ATGHLLYKFLKDAEARYDVKYVDDLNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLV 636 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V + + + L ++ +++ Sbjct: 637 SLSNVEYFYRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIE 696 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D +L+ L D + D +Y Sbjct: 697 VQPKPNYAPLLEQHVIADEDHLE---DILKNMVKLGDELEKTVVATGDVHYLDPHDGIYR 753 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + + ++ +D L E F H L S K Sbjct: 754 KILINSQGGANPLNRT----ERPEVHFRTTDEMLNEFAF--LGEEKAHELVVENSNKIAA 807 Query: 419 DWLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + ++ K L ++ + ++Q + + ++ GD + + + + L ++ Sbjct: 808 EIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPLPQLVQDRIELELNSIV 864 >gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus TM300] gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 1437 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 72/477 (15%), Positives = 139/477 (29%), Gaps = 52/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HDGEIIDKFERFS---NPHERLSDTIKNLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E + +F I +N FD + + R +Y Sbjct: 477 SDDMLVDAP----EIDDVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERAGLGNYTNG-- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R I L LA G+E H A D A Sbjct: 531 ----VIDTLELSRTINTEF-------------GKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ + D + + + ++ +++ Sbjct: 574 TAYIFIKMLKQVEELGVTNHKDINQSLSNEDAYKRARPSHITILVQNQDGLKNLFKIVSE 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + +FT ++ + Sbjct: 634 SLVTYYYRTPRIPRSLLDEYREGLLIGTACDEGEVFT--AVMQKDQSQVERIAKYYDYIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P + D+K E LL+ + A N Y + Sbjct: 692 VQPPALYQDLIDRELIRDNKTMEEIYERLLKAGEAVNVPIVATGNVHYLNE-----HDSI 746 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEK 417 + T PE + +D L F + H + ++ Sbjct: 747 ARKILIASQPGNPLNRSTLPE----AHFRTTDEMLD--AFHFLGEEKAHEIVVENTQALA 800 Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L R+E +++ +S E GD+ + +I+ L + L+ +I Sbjct: 801 DRIERVVPIKDKLYTPRMEGANEEIREMSYENARKLYGDDLPQIVIDRLEKELESII 857 >gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] Length = 1144 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 127 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 182 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 183 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 232 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 233 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 279 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 280 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 339 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 340 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 399 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 400 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 455 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 456 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 509 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 510 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 565 >gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] Length = 1437 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 59/446 (13%), Positives = 116/446 (26%), Gaps = 47/446 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G + + V++ + + F + +TGI Sbjct: 420 TYVIFDVETTGLSAVYNTIIEIGAVKM-HKGNVVGEFSEF---LNPGHHLSSFTTELTGI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E + F I+ +N FD + + RN Sbjct: 476 TDSMVANA-RPEPEVMQDFLDF---CQGTILVAHNASFDVGFIDAAYQRNGLP------T 525 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R +Y SF+L L+ + + H A D + Sbjct: 526 IENPVIDTLELARYLY-------------PHLKSFRLNTLSKHFNVSLEHHHRAIYDATS 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T AL W+ ++ + + +Y + + + + P Sbjct: 573 TGALAWIFVKEAKESHDMVYHDQLNRDIGQGDAYKKGRPFHATILAKNQKGLKDLFKLVS 632 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A + Y V S + L ++ K + Sbjct: 633 ASNVDYFHRVPRIPRSLLKEHREHLLIGSACSEGEVFTAAMQKGKETAKKFAEFYDYLEI 692 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P + + I+++ + L L A + Y + + ++ Sbjct: 693 QPKASYEPLLRNQDIINNEALENIINDLVDIGDELGITVVATGDAHYLNPEDKIYREILI 752 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + R + L + F L S Sbjct: 753 NSIKSNRSKYFPRAH-----------FRTTKEMLDDFAF--LGEEKAFELVVTNSNAIAD 799 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E L I+ + +++ Sbjct: 800 SIEFVEPIHDKLYTPHIDGAEESIRN 825 >gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016] gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112] gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus reuteri DSM 20016] gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] Length = 1443 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 61/477 (12%), Positives = 136/477 (28%), Gaps = 47/477 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +VI+D ET G D+ + + V++ + +E + F + + +T Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKM-QDGNVLERFDEF---IDPGFPLSEQTTNLTS 479 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E E + F CII +N+ FD + + R+ Sbjct: 480 ITTEMVQGS-KTEEEVFQMFKDF---CKGCIIAGHNVSFDMGFMNTGYERHQMGKIA--- 532 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R +Y ++L L+ + + H A D Sbjct: 533 ---EPVIDTLPLARFLY-------------PDMRGYRLNTLSKKFKVALEHHHRANYDSE 576 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L++ + ++ Y + + ++ P + Sbjct: 577 ATGHLLYKFLKDAEARYDVKYVDDLNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLV 636 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V + + + L ++ +++ Sbjct: 637 SLSNVEYFYRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIE 696 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D +L+ L D + D +Y Sbjct: 697 VQPKPNYAPLLEQHVIADEGHLE---DILKNMVKLGDELEKTVVATGDVHYLDPHDGIYR 753 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + + ++ +D L E F H L S K Sbjct: 754 KILINSQGGANPLNRT----ERPEVHFRTTDEMLNEFAF--LGEEKAHELVVENSNKIAA 807 Query: 419 DWLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + ++ K L ++ + ++Q + + ++ GD + + + + L ++ Sbjct: 808 EIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPLPQLVQDRIELELNSIV 864 >gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] Length = 1443 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 60/477 (12%), Positives = 137/477 (28%), Gaps = 47/477 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +VI+D ET G D+ + + V++ + +E + F + + +T Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKM-QDGNVLERFDEF---IDPGFPLSEQTTNLTS 479 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E E + F CII +N+ FD + + R+ Sbjct: 480 ITTEMVQGS-KTEEEVFQMFKDF---CKGCIIAGHNVAFDMGFMNTGYERHQMGKIA--- 532 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R +Y ++L L+ + + H A D Sbjct: 533 ---EPVIDTLPLARFLY-------------PDMRGYRLNTLSKKFKVALEHHHRANYDSE 576 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L++ + ++ Y + + ++ P + Sbjct: 577 ATGHLLYKFLKDAEARYDVKYVDDLNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLV 636 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V + + + L ++ +++ Sbjct: 637 SLSNVEYFYRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIE 696 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D + +L+ L D + D +Y Sbjct: 697 VQPKPNYAPLLEQHVIADEEHLE---DILKNMVKLGDELEKTVVATGDVHYLDPHDGIYR 753 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + + ++ +D L + F H L S K Sbjct: 754 KILINSQGGANPLNRT----ERPEVHFRTTDEMLNKFAF--LGEEKAHELVVENSNKIAA 807 Query: 419 DWLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + ++ K L ++ + ++Q + + ++ GD + + + + L ++ Sbjct: 808 EIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPLPQLVQDRIELELNSIV 864 >gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B] gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho africanus TCF52B] Length = 1365 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 77/478 (16%), Positives = 151/478 (31%), Gaps = 52/478 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G + D +F V+ + + I++ + F KP D + +TGIT Sbjct: 348 YTVFDLETTGTNARFDEIIEFGAVKY-KDGKIIDTFKSF-VKPNKD--INDFTQKLTGIT 403 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E E + +F ++ +N FD + YR YD Sbjct: 404 NDMLKDAPGIE-EVVPKFLEFIE---GTVLVAHNADFDYGFI-REVYRKMYD-------- 450 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + LD ++ ++ SF L L + H A D T Sbjct: 451 KDLIMPYLDTLKLSKVILKGKVK---------SFGLGKLVEYFKLGPFKHHRAFEDASVT 501 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L + E K+ + NK + I + + + + + + Sbjct: 502 AELFGKLVELLGKMGIKSLNDINKLKAGTSISSIRTKRVFNHITILVKDKIGLKNLYKLV 561 Query: 245 W--HPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEVH 296 H +Y V + + L + ++ + L S + + + +KE Sbjct: 562 SDAHVKYFKYVPFVPKNVLKEYKEGLIFGTGCEQGEIFEALKGSATDEEIIE--LLKEYD 619 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD- 355 + L I KE + + L + + + Sbjct: 620 YVEIFPLSTIVSVNKEQAKEIFKRLYFLAKRLKM----PVVMVDNAHYLEPEDIKARHVL 675 Query: 356 -VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + + D+ + LRT E L F D ++ R P+ + Sbjct: 676 LSPKEKSNPHDEDLRDKDAQLYLRTTDELLKEAIEIFGDEKIA----REVVIENPNKI-- 729 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + KK L I+ + +++L + E GD E + L + L+ +I Sbjct: 730 ADMIEDIAPVKKKLHPPIIDGAEENVRNLSLKRAKELYGDPLPEVIEKRLEKELKSII 787 >gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium praevalens DSM 2228] Length = 1404 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 72/474 (15%), Positives = 149/474 (31%), Gaps = 51/474 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+++D ET G + + + V+ + +KI E F + ITGI Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKY-QGGKKIAEFESF---INPGVRIPAKITEITGIN 447 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + I+ F T ++ +N FD + R + + + Sbjct: 448 DRMVKNAPGLE----KVINDFIEFAGTGVLVAHNADFDYGFIRTALEKLEIE------KD 497 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + RA+ + + KL LA G++ N H A D AT Sbjct: 498 DYTVLDTLGLSRAV-------------VKDSKNHKLNTLAKYFGVDLENHHRALDDANAT 544 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS--RSNTALIAP 242 ++ + E + + N ID +++ P V ++ LI+ Sbjct: 545 AEVLAKLLELIKDDGCHNLNKIN--DYISKIDWKDLRPFHAVILAENKKGLKNLYQLISI 602 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKC 300 + YK I ++ R + S A +++ + +++ + + K + Sbjct: 603 SHLNNFYKKPRILKSVLLQHREGLIIGSACEAGQIYKAFVNNKPRSEIKKIAKLYDYLEL 662 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L + + + L Q + L Sbjct: 663 QPLGNNQFLIPAKVNSKDDLKEINKKIYKL--GQELDKPVVATTDAHFLDPKDSIFREIL 720 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 G + Q RT E LS + A+ + Sbjct: 721 QTGQGFNDADQQPPIYYRTTNEMLSEFA---------YFGKK-IAKEIVIDNPNQIADRI 770 Query: 421 LEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + L IE + +++ + + ++ G++ + +I+ L + L +I Sbjct: 771 EKIKPIPDGLFTPEIEGAEAEIREMSYNRAHKFYGEKLPQLVIDRLEKELSSII 824 >gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988] Length = 1444 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E+ K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165] gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S] gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161] gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900] gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003] gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165] gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900] gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 1444 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E+ K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e] gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e] Length = 1444 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E+ K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561] Length = 1444 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E+ K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437] Length = 1099 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 72/462 (15%), Positives = 144/462 (31%), Gaps = 53/462 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + A V+V + E I+ E F +TG Sbjct: 414 DTYVVFDVETTGLSAVHDEIIELAAVKV-KDGEIIDRFESF---INPHRKLTATITELTG 469 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + E S + ++ ++ +N RFD + + + Sbjct: 470 ITDEMVVDAP----ELSEVLPRYLEFIEGTVLVAHNARFDMGFLQAACKKTGC------Q 519 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L++ R +Y + +L L IE H A D Sbjct: 520 PVDHPVLDTLELGRFLY-------------PRLKNHRLNTLCKQFDIELTQHHRAIYDAE 566 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+W + + + D N+ + ++ ++ + ++ L++ Sbjct: 567 ATGFLLWRMLQDCIERKIVRLDQLNEYTGERDLNRLRPFHVIVLVKNHIGLKNLYKLVSL 626 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L R + S LF L+ + Sbjct: 627 SHLKYFYRTPRIPRSLLEKHREGLIIGSGCEKGELF--EAALQKSPEEVEEMARFYDYLE 684 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-----RQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P+D + + + + LL + + Y + + +D+ Sbjct: 685 IQPVDVNRHLLEKEIVASEEHLRQANQLLLKIGDKLNKPVVATSNTHYLNKWEAIYRDIL 744 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF---RYRARN------F 408 + G F + T E L+ + + R E+ R A F Sbjct: 745 AFNQTGGFRNKGPLSPAHFRTTD-EMLAEFSY-LGEERAREVVVVNPRKIADEIEELKPF 802 Query: 409 PHTL-------SEKEKQDWLEHRKKMLTRSRIEE-YKNKLQS 442 P L S+ E + + L + + E + +L+ Sbjct: 803 PEGLHTPIIEGSDDELRRICYETAENLYGNPLPEIVEQRLEK 844 >gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A] Length = 1457 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 440 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 495 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 496 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 545 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 546 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 592 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 593 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 652 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 653 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 712 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 713 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 768 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 769 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 822 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 823 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 878 >gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes Clip81459] gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1444 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 810 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220] Length = 1444 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 810 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1438 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 66/476 (13%), Positives = 137/476 (28%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V + E I+ E F +T I Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-KDGEIIDKFERFS---NPHERLSETIKNLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +E + +F S I +N FD + + Sbjct: 477 SDDMLVDAPEIE----EVLTEFKSWVGDAIFVAHNASFDMGFIDTGYEHVGI-------- 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G S ++D + + + + L LA G+E H A D A Sbjct: 525 -GASTNGVIDTLELSRTINTEYGK----------HGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ + D + + ++ +++ Sbjct: 574 TAYMFIKMLKQLEALGVHNHQDINTSLSNEDAYKRARPNHVTLIVQNQDGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + S +FT ++ + Sbjct: 634 SLVQYYYRTPRIPRSLLDEYREGILVGSACDEGEVFT--AVMQKDQSQVERIAKYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D++ E L I ++ + Sbjct: 692 VQPPALYQDLIDRELVRDNETLHEIYNRL----IRAGDVNNIPVIATGNAHYLNEHDAIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T P + +D L EL + + L + Sbjct: 748 RKILIAAQPGNPLNRSTLP----KAHFRTTDEMLDEL--HFLGEEKAYELVVQNTNDLAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L R+E +++ +S + GD+ + +I+ L + L+ +I Sbjct: 802 KIERVVPIKDELFTPRMEGANEEIREMSYDNAKALYGDDLPQIVIDRLEKELESII 857 >gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] Length = 1438 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 136/476 (28%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V E I+ E F + +T I Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-YDGEIIDKFERFS---NPHQKLSETIINLTHI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I +N FD + + R + Sbjct: 477 TDDMLTDAP----EIDEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERIGFGP------ 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R I L LA G+E H A D A Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ K D K + + + ++ +++ Sbjct: 574 TAYIFIKMLQQMKELGVSNHKDINKKLSNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + + LFT ++ K + Sbjct: 634 SLVKYYYRTPRIPRSLLDEFREGLLIGTACDEGELFT--AVMQRDQSEVEKVANYYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D E L + I ++ + Sbjct: 692 VQPPALYQDLLDRELIRDTATLHEIYQRLLKA----GEQANIPVIATGNAHYLNEHDGIA 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + T P + +D L E F + + + + Sbjct: 748 RKILIASQPGNPLNRSTLP----KAHFRTTDEMLDE--FHFLGEEKAYEIVVKNTNALAD 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++ L + + G++ + +I+ L + L +I Sbjct: 802 RIERVVPIKDQLFTPRMEGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELASII 857 >gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str. F2365] gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes serotype 4b str. F2365] gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816] Length = 1444 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + P A Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468 W+E K L +I+ +++++++ + ++ K ++ A L + L+ +I Sbjct: 810 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] Length = 1427 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 72/479 (15%), Positives = 147/479 (30%), Gaps = 63/479 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + D+ + VR+ + + + F P V +TGIT Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRI-KDGKYKDEFSSF---INPHVPIPPSIVNLTGITD 471 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E + +R +F ++ +N +FD + R + Sbjct: 472 DMVSNAP-DEGDVLQRFMEF---AGDAVLVAHNAQFDMGFIRQHGQKYNL-------KFA 520 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N D L + R G +KL LA I+ N H A D Sbjct: 521 NPVLDTLTLAR-------------QLFKGLKHYKLDTLAHHLHIDMDNHHRAVDDARTAA 567 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 +++ +K ++ N+ + + + V + G ++ LI+ Sbjct: 568 EILFRCMDKLSEMGCQFLSDLNRVFGSSISNNSELYHAVILVKNQGGLKNLYKLISVSHI 627 Query: 246 HPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 Y+ I ++ R D+ +L + L S + V Sbjct: 628 DYFYRKPRIPKSVLVQYRDNLIIGSGCDAGELYQALIKSAADSVIKDIVAF-----YDYL 682 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+D E D ++ ++ + + ++ DV Sbjct: 683 EIQPLDNAAHLIKEGKVADRQQLMDINKRIYE--------LGKLFDKPVVATGDVHFLDP 734 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR----ARN----FPHTLS 413 + + +Q + L +D L E F+Y R P+ ++ Sbjct: 735 HDEYFRRILMHGQGF--SDADQQAPLYFKTTDEMLEE--FKYLGDDACREVVISNPNAIA 790 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++++ I+ + ++Q+++ GD + L + L +I Sbjct: 791 S--MIEFVKPIPDEFYPPHIDRAEEEIQNMALSNALAIYGDPLPPIVKQRLDKELNAII 847 >gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes L99] Length = 1443 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 139/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 426 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 482 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 532 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + + P A Sbjct: 579 TAYLAWKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 639 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 699 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 754 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 755 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNSNLVVD 808 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 W+E K L +I+ +++++++S E E L L + L+ +I Sbjct: 809 WMEDLKPIKDELYTPKIDGAEDEVRNMSYEMAHQLYGENLPEIVEARLEKELKSII 864 >gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] Length = 1445 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 137/475 (28%), Gaps = 45/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + S + F + + +TGI Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVEASFDEF---IDPGHPLSNTTINLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F ++ +N FD + + + Sbjct: 480 TDEMVRGS-KSEEEVLRLFREF---SEGAVLVAHNASFDMGFLNTSYRKYGIPEAEN--- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 533 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242 T L W+ ++ + + + + P + N + Sbjct: 577 TGHLAWIFVKEAMEHHKMFLHEDLNRHVGGENSYRAARPFHATILVQTQKGLKNLFKLIS 636 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 ++ + D V S +++ + L + ++ V K Sbjct: 637 MSNVTYFHDKVPRIPRSELVKLREGLIVGSGCDKGEVFVAMMQKGVEAAKKLAEFYDYIE 696 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + E + L++ L A N Y + +Y Sbjct: 697 IMPKPVYAPLIEQELIKNEADLEEIITNLIQIGDELNKPVVATGNVHYLNEED----SIY 752 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQD 419 + + P ++ +D L E F RA+ T Sbjct: 753 RKILINSMGGANPLNRHSLP----KVHFRTTDDMLREFDFLGSERAQEVVVTNPNALVDR 808 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L +I + ++ L + E GD + + L + L +I Sbjct: 809 CETVVPVKDKLYTPKIPGSEEEITQLSYTRAKELYGDPLPDIVEKRLEKELHSII 863 >gi|213023524|ref|ZP_03337971.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 131 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 65/107 (60%), Positives = 78/107 (72%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV IT Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 GITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RN Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRN 115 >gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL F2-208] Length = 1447 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 138/476 (28%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 430 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 485 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 486 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 536 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 582 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + + P A Sbjct: 583 TAYLAWKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 642 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 643 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 702 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D E L + R A N Y ++Y Sbjct: 703 QPKPVYAPLIERELVRDETALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 758 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 759 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNSNLVVD 812 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 W+E K L +I+ +++++++S E E L L + L+ +I Sbjct: 813 WMEDLKPIKDELYTPKIDGAEDEVRNMSYEMAHQLYGENLPEIVEARLEKELKSII 868 >gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] Length = 1367 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 140/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 426 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 482 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 532 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + + P A Sbjct: 579 TAYLAWKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K + Sbjct: 639 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 699 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 754 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 755 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNPNVVVD 808 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 W+E K L +I+ +++++ ++ + G+ E + L + L+ +I Sbjct: 809 WMEDLKPIKDELYTPKIDGAEDEVRDMSYAMAHQLYGENLPEIVEARLEKELKSII 864 >gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1440 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 77/476 (16%), Positives = 143/476 (30%), Gaps = 54/476 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + D + A V+V + + +++ + DP+ V +TGIT Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKV-KAGQIVDTYATL---IDPERSLDPKIVELTGIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E QF ++ +N FD + R D + Sbjct: 483 NEMVAGQPK-LREALDGFRQF---ARGAVLVAHNAEFDVGFLNQCAERLGLDPWE----- 533 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R +Y G ++KL+ L ++ VN H A AD AT Sbjct: 534 -QPVIDTLALARVLY-------------PGEKNYKLKTLTQKFSVDLVNHHRALADSEAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + + + N LR IDI + P + Sbjct: 580 AKVFVHMLKDAKARGIHNLLDMN--HLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSI 637 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303 H +Y V S R + L ++ +G I + + Sbjct: 638 AHTQYLHRVPRIPKSALARHREGLLIGTACRQGELVEAFFRGKSEDEIDTLLEFYDYLEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P+ + + E ++ E L + + ++ + D + Sbjct: 698 QPVSHYEPLVREGVVASFEQVRELLRNIVEIGKRLNKPVVATGDVHYLDEHDAIFREIFL 757 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 +D + L+ +D L E F T+ + Sbjct: 758 QSQKLDTKQPP------------LHFRTTDEMLEEFAF--LGEEDARTVVIDNPRRLAAL 803 Query: 424 RK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 L IE +++++ L+ + GD E + L L +I Sbjct: 804 CDDVKPIPDELHTPVIEGAEDEIRRLAYDKAKRIYGDPLPELVEKRLERELNAIIS 859 >gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] Length = 1449 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 72/479 (15%), Positives = 138/479 (28%), Gaps = 53/479 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + A VR+ + S + F + V +TGI Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEGSFDEF---IDPGHPLSRTTVELTGI 477 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + + Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242 T L W+ ++ + + L + + P + A N + Sbjct: 575 TGHLAWIFVKEAMEKHDMLLHEDLNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 ++ + D V S +++ + L + ++ V + Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIE 694 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP K + + L Q + + + +D +Y Sbjct: 695 VMPKAVYAHLLETELVKSEKDLEDIIRNLIQMGEELGKIVVATGNAHYLNEEDA---IYR 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLSEK 415 + + P+ ++ +D L PE+ N K Sbjct: 752 KVLINSMGGANPLNRHSLPD----VHFRTTDEMLTAFQFLGPEVAKEIVVTN-----PNK 802 Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L +I + ++ L + E GD E + L + L +I Sbjct: 803 IADLCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861 >gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10] gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10] Length = 1433 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 65/478 (13%), Positives = 148/478 (30%), Gaps = 55/478 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G + DR + V+V R + ++ F V +TG Sbjct: 420 DDFVVFDIETTGLNPQQDRITEIGAVKV-RNGQIVDRFSAF---VNPGVSIPSFIVKLTG 475 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +E + +++F ++ +N FD + ++ Sbjct: 476 ITNDMVKDAPPIE----QVLNEFMEFIQGSVLVAHNANFDVGFIKHNAK-------IIGE 524 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R ++ +KL +A IE N H A D Sbjct: 525 KVKNPYLDTLELCRKMF-------------PELGRYKLNIVAKHLKIELENHHRAVDDSM 571 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + + + ++ + + + ++ +++ Sbjct: 572 ATAKIFIHCLNELKEKGCKNIKDIQNAFDGEVNLKASSYHAIILVKNKVGLKNLYKIVSQ 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKC 300 YK + L + R L S A L+ + +++ + + ++ + Sbjct: 632 SHLKYLYKKPRVPKKLLMEYREGLILGSACEAGELYRAILNNKSEDEISKIVRFYDYLEI 691 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L + + K+ + ++R R A + + +V ++ Sbjct: 692 QPLGNNQFLINNGKVSSQEELKKINK--KIIRLGERHRKPVVATCDVHFMDPRDEVFRRI 749 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 T + + L ++ L E Y + + Sbjct: 750 LMSGRGF-----------TDADNQAPLYFRTTEEMLEEFS--YLGEEKAREVVIENTNLI 796 Query: 421 LEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + +IE + ++++ + E G+E E + L + L +I Sbjct: 797 ADMIESIAPVLEGTFPPKIEGAEQDIENMAMNRAKEIYGEELPEVVAKRLEKELNSII 854 >gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] Length = 1443 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 66/474 (13%), Positives = 142/474 (29%), Gaps = 44/474 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N FV++D ET G D+ + V++ + I+S F + +T Sbjct: 428 NTFVVFDLETTGFSSEYDKIIEIGAVKI-KNGNIIDSFSTF---VNPEIKIPYNITELTS 483 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + +F ++ +N FD + R D Sbjct: 484 ITNDDVKNADTIDN----VLPKFMEFCKDSVLVAHNANFDMSFIRKNCNDLSIDINYT-- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + + +KL +A G+ N H A D Sbjct: 538 -----VMDTVPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 579 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 AT ++ + + D NK L + + T + + ++ LI+ Sbjct: 580 ATADILLCCFKLLDDMKITSLDSLNKEFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299 ++ + +L + + S A ++ + + + + IK + Sbjct: 640 YSNLDYFFRKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKSQEELKEIIKFYDYLE 699 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +M ++ K+ + K + L + N Sbjct: 700 IQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGK-ENGLPIVATGDVHFLDPKDAKFREI 758 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 L G L+T E L D E+ P ++E+ + Sbjct: 759 LMKGQGFSDAEDQPPLYLKTTNEMLKEFEYLGKDE-CKEVV---IY--NPQKIAEEI--E 810 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 ++ +IE + +++++ E G+ + + + L + L +I Sbjct: 811 VIKPIPDETFPPKIEGAEEDIRNMTLEKAHSIYGNPLPKVVHDRLEKELNSIIN 864 >gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] Length = 1452 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 140/477 (29%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 435 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 490 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T + Q F + I+ +N FD + + + Sbjct: 491 TDDMVKGSDP-----IDVVLQRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 539 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L++ R +Y + +L L I H A D Sbjct: 540 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 586 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L W + + ++ + Y + + + + P A Sbjct: 587 ATAYLAWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 646 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V S ++ + L + ++ + K Sbjct: 647 TMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMLAAEKVAEFYDFIE 706 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K E L + R A N Y ++Y Sbjct: 707 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIY 762 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418 +L ++ +D L E F + + Sbjct: 763 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 816 Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 DW+E K L +I+ +++++ +++ + G++ E + L + L+ +I Sbjct: 817 DWMEELKPIKDELYTPKIDGAEDEVRNMSYNMAHQLYGEKLPEIVEARLEKELKSII 873 >gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 1433 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 66/480 (13%), Positives = 147/480 (30%), Gaps = 55/480 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + FV++D ET G + D+ + V+V R + ++ F V + Sbjct: 418 LEDDFVVFDIETTGLNPHQDKITEIGAVKV-RNGQIVDRFSAF---VNPGVSIPSFIVKL 473 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT VE + +++F ++ +N FD + + Sbjct: 474 TGITDDMVKDAPPVE----QVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGE----- 524 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D L++ R ++ +KL +A IE N H A D Sbjct: 525 --KVKNPYIDTLELCRKMF-------------PELGRYKLNIVAKHLKIELENHHRAVDD 569 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + + ++ + + + ++ ++ Sbjct: 570 SMATAKIFMHCINILKEKGCKTIKDIQNAFDGEINLKASSYHAIILVKNKVGLKNLYKIV 629 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298 + YK + L + R L S A L+ + +++ + + ++ Sbjct: 630 SQSHLKYFYKKPRVPKKLLMEYREGLILGSACEAGELYRAILNNKSEEEISKIVRFYDYL 689 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + L + + K+ + ++R R A + + +V Sbjct: 690 EIQPLGNNQFLINNGKVSSQEELKKINK--KIIRLGERHRKLVVATCDVHFMDPRDEVFR 747 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 ++ T + + L L +D L E Y + + Sbjct: 748 RILMAGRGF-----------TDADNQAPLYLRTTDEMLEEFS--YLGEEKAREVVIENTN 794 Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + IE + ++++ + E G++ E + L + L +I Sbjct: 795 LIADMIESIAPVLEGTYPPNIEGAEQDIENMAMTRAKEIYGEDLPEVVAQRLEKELNSII 854 >gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] Length = 1367 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 72/471 (15%), Positives = 141/471 (29%), Gaps = 44/471 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D+ET G D +D + V++ ++ I+ ++ ITGI Sbjct: 359 TFVVFDFETTGLDPQVDEIIEIGAVKI-KEGRIIDEYHTL---IKPSGTISRKSAEITGI 414 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +E E +F I+ +N FD + R + + + Sbjct: 415 TQEMLEGERAIE-EVLPEFLEFLEDS---ILVAHNANFDYRFLRLWIKKVLGKDWEKPY- 469 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + S+ L + G+ H A D Sbjct: 470 -------------------VDTLALAKSLLRLKSYSLDSVVKKLGLGSFRHHRALDDARV 510 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + E K+ K + Q + ++ L++ Sbjct: 511 TAQVFLRFIEMMKKIGITKLSEMEKLKDSVDFTAQKPYHCTILVQNRTGLKNLYRLVS-- 568 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302 + +Y SV S + + L + L+G ++E+ Sbjct: 569 DSYTKYFHSVPRILKSELIEKREGLIVGSACISGELARAALEGASDSELEEIAKFYDYIE 628 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP+D +++ + + L R L + + Sbjct: 629 IMPLDVIEEDEEVDRERLKEVYRK---LYRIAKRLNKPVVMTGDVHFLDPEDAKGRSALL 685 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 + + LRT E L F D E+ N P+ + E + ++ Sbjct: 686 APQSRNFERQPALYLRTTEEMLEKAMEIFEDE---EIAKEVVVEN-PNRI--AEMIEEVQ 739 Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 +K L IE +++L + E GD E + + + L +I Sbjct: 740 PLEKKLHPPVIENADEIVRNLTMERAHELYGDPLPEIVEKRIKKELDAIIN 790 >gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262] gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262] gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria innocua FSL S4-378] Length = 1444 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T + + F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDP-----IDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVGLE------ 531 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L++ R +Y + +L L I H A D Sbjct: 532 KAKNAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 578 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L W + + ++ + + + + + + P Sbjct: 579 ATAYLAWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLI 638 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V S ++ + L + ++ + K Sbjct: 639 TMSNINYFYRVPRIPRSQLKKMREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIE 698 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K E L + R A N Y ++Y Sbjct: 699 VQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIY 754 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418 +L ++ +D L E F + + Sbjct: 755 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEIVVTNSNLVV 808 Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 DW++ K L +I+ ++++++ ++ + G++ E + L + L+ +I Sbjct: 809 DWMDDLKPIKDELYTPKIDGAEDEVRNMSYGMAHQLYGEKLPEIVEARLEKELKSII 865 >gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] Length = 1449 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 138/476 (28%), Gaps = 47/476 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + A VR+ + S + F + V +TGI Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEASFDEF---IDPGHPLSRTTVELTGI 477 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + + Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242 T L W+ ++ + E L + + P + A N + Sbjct: 575 TGHLAWIFVKEAMEKHEMLLHEELNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 ++ + D V S +++ + L + ++ V + Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIE 694 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP K + + L + + + + +D +Y Sbjct: 695 VMPKAVYAHLLETELVKSEKDLEDIIRNLVKMGEELGKIVVATGNAHYLNEEDA---IYR 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + + P+ ++ +D L F++ + K Sbjct: 752 KVLINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFQFLGPEAAKEIVVTNPNKIAD 805 Query: 419 DWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L +I + ++ L + E GD E + L + L +I Sbjct: 806 LCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861 >gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL N1-067] Length = 1452 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 435 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 490 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T + + F + I+ +N FD + + + Sbjct: 491 TDDMVKGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 539 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L++ R +Y + +L L I H A D Sbjct: 540 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 586 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L W + + ++ + Y + + + + P A Sbjct: 587 ATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 646 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V S ++ + L + ++ + K Sbjct: 647 TMSNINYFYRVPRIPRSQLNKLREGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIE 706 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K E L + R A N Y ++Y Sbjct: 707 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIY 762 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418 +L ++ +D L E F + + Sbjct: 763 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 816 Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 DW+E K L +I+ ++++++ ++ + G+ E + L + L+ +I Sbjct: 817 DWIEDLKPIKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSII 873 >gi|213609520|ref|ZP_03369346.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 187 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 1/187 (0%) Query: 261 DMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGID 320 D+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + + E +R GI+ Sbjct: 1 DISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRPEDADRLGIN 60 Query: 321 HKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRT 379 + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+D DR M +L T Sbjct: 61 RQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFSDADRAAMKIVLET 120 Query: 380 APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNK 439 P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT +++Y N+ Sbjct: 121 EPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANE 180 Query: 440 LQSLSGE 446 LQ LS + Sbjct: 181 LQMLSQQ 187 >gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70] gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] Length = 1435 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 72/479 (15%), Positives = 141/479 (29%), Gaps = 53/479 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G + + A V+V + E I+ F + + +TG Sbjct: 418 DTYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFTSFA---NPHHPLSITTIELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT VE E R+ + + I+ +N FD + F + Sbjct: 474 ITDDMLKDAPDVE-EVLRQFYDWM---GDSILVAHNASFDIGFLNVGFTKLGLG------ 523 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 524 KVTNPVIDTLELARFLY-------------PELKNHRLNTLCKKFDIELTQHHRAIYDAE 570 Query: 183 ATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT L+ + + + L+ + R+K ++ Q P Sbjct: 571 ATGYLLMRLLKDAQERGILYHDELNERSKEEV----SYQRSRPFHVTLLAQNDIGLKNLF 626 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 H +Y V S + + + + + ++ + Sbjct: 627 KLVSLSHVKYFYRVPRIPRSVLQQHREGILVGSGCDKGEVFDNMIQKAPEEVEEIAKFYD 686 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + K + D E ++R+ L ++ + + + Sbjct: 687 FLEVHPPEVYKPLIEMDYVKDENMIKE---IIRKIVMLGEKLNIPVVATGNVHYLNPEDK 743 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 +Y +L + +D L F + Q Sbjct: 744 IYRKILIHSQGGANPLNRY----ELPDVYFRTTDEMLKCFSF--LGEEKAKEIVVMNTQK 797 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L RIE + +++ + + E GD E + L + L+ +I Sbjct: 798 IADLIGEVKPIKDKLYTPRIEGAEEEIREMSYRRAKEIYGDPLPEIVEQRLEKELKSII 856 >gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] Length = 1449 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 138/476 (28%), Gaps = 47/476 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + A VR+ + S + F + V +TGI Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEASFDEF---IDPGHPLSRTTVELTGI 477 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + + Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242 T L W+ ++ + E L + + P + A N + Sbjct: 575 TGHLAWIFVKEAMEKHEMLLHEELNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 ++ + D V S +++ + L + ++ V + Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIE 694 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP K + + L + + + + +D +Y Sbjct: 695 VMPKAVYAHLLEMELVKSEKDLEDIIRNLVKMGEELGKIVVATGNAHYLNEEDA---IYR 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + + P+ ++ +D L F++ + K Sbjct: 752 KVLINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFQFLGPEAAKEIVVTNPNKIAD 805 Query: 419 DWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L +I + ++ L + E GD E + L + L +I Sbjct: 806 LCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861 >gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42] gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42] Length = 1437 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 139/475 (29%), Gaps = 44/475 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + A V++ R E I+ E F + + +TG Sbjct: 419 DTYVVFDVETTGLSAVYDTIIELAAVKI-RGGEIIDKFEAFA---NPHHPLSATTIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + F ++ +N FD + + R + Sbjct: 475 ITDDMVRDAP----DVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLL-----KTE 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAKNPVIDTLELARFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAVFDAE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + Y + + + Q P + Sbjct: 573 ATGYLLLKMLK-DAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H +Y V S + + L R ++ Sbjct: 632 SISHIQYFYRVPRIPRSQLNKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLQLELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ---- 418 +L ++ +D L F A + + ++ Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLEAFSF-LGAEKAKEIVVDNTQKVASM 803 Query: 419 -DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 D ++ K L +I+ +++ +S + G+E E + + + L+ +I Sbjct: 804 IDEIKPIKDDLYTPKIDGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858 >gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1] gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus plantarum WCFS1] gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1437 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 57/475 (12%), Positives = 128/475 (26%), Gaps = 47/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G DR + + V++ + ++ E F + +T I Sbjct: 421 TYVIFDTETTGLSAIYDRVIELSAVKM-VKGNVVDQFEEF---IDPGFHLSETTTNLTSI 476 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E + +F I+ +N+ FD + + R+ Sbjct: 477 TDDMVRGS-KSEEEVFKLFREF---YGDAIVVGHNVTFDIGFMNTGYARHHMGPI----- 527 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y ++L LA + + H A D Sbjct: 528 -TNPIIDTLTLARWLY-------------PNLRGYRLNTLAKKFNVNLEHHHRAIYDAET 573 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L L + ++ + + + + + ++ P + Sbjct: 574 TGHLNHLFLKDAEDRYQVQFHDQLNDHMNENAAYRHARPFHATLYAQTQAGLKNLFRIIS 633 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S + + ++ ++ + Sbjct: 634 LSNVEYYYRVPRVPRSVLNKYRDGILVGSACSSGEVFTAMMQKGKEEARQKAGYYDFLEV 693 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P D +L + I Sbjct: 694 QPKPAYSALIESGLIADTD----HLEEIISNMVELGHEMNIPVAATGDVHYLNPEDKIYR 749 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEKEK 417 + + ++ +D L + F + P L ++ Sbjct: 750 KILIHSQPGNPLNRT----ERPDVHFRSTDEMLKDFDFLGTETAHEVVVDTPRAL--ADQ 803 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + + K L R++ + +++ L+ + G+ E + + + L+ +I Sbjct: 804 FEIVRPVKDKLYTPRMKGAEAEIEKLTMDRAHAWYGNPLPEIVQKRVDKELKSII 858 >gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL S4-171] Length = 1444 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T + + F + I+ +N FD + + + Sbjct: 483 TDDMVKGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 531 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L++ R +Y + +L L I H A D Sbjct: 532 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 578 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L W + + ++ + Y + + + + P A Sbjct: 579 ATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 638 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V S ++ + L + ++ + K Sbjct: 639 TMSNINYFYRVPRIPRSQLNKLREGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIE 698 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K E L + R A N Y ++Y Sbjct: 699 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIY 754 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418 +L ++ +D L E F + + Sbjct: 755 RKILIYSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 808 Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 DW+E K L +I+ ++++++ ++ + G+ E + L + L+ +I Sbjct: 809 DWIEDLKPIKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSII 865 >gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7] gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208] gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3] Length = 1437 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 139/475 (29%), Gaps = 44/475 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + A V++ R E I+ E F + + +TG Sbjct: 419 DTYVVFDVETTGLSAVYDTIIELAAVKI-RGGEIIDKFEAFA---NPHHPLSATTIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + F ++ +N FD + + R + Sbjct: 475 ITDDMVRDAP----DVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLL-----KTE 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAKNPVIDTLELARFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAVFDAE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + Y + + + Q P + Sbjct: 573 ATGYLLLKMLK-DAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H +Y V S + + L R ++ Sbjct: 632 SISHIQYFYRVPRIPRSQLDKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLQLELVRDEKALKE---IITNITKLGEKLNKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ---- 418 +L ++ +D L F A + E ++ Sbjct: 749 KILVSSQGGANPLNRH----ELPKVHFRTTDEMLDAFSF-LGAEKAKEIVVENTQKVASM 803 Query: 419 -DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + ++ K L +I+ +++ +S + G+E E + + + L+ +I Sbjct: 804 IEEIKPIKDDLYTPKIDGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858 >gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405] gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium thermocellum ATCC 27405] Length = 1442 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 145/477 (30%), Gaps = 56/477 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D+ + V++ ++ + +++ F + V +TGIT Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKI-KEGKIVDTFSTF---VNPEIPIPEFVVKLTGIT 484 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + +F T + +N FD + R+ + + Sbjct: 485 DDMVSDAPTID----KVLPEFLEFVGTSPLVAHNAVFDTGFIRHNAR-------LINRNV 533 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ KL +A G+ N H A D A Sbjct: 534 DNPVIDTLELSRQMF-------------PELKKHKLDVVAKHLGVSLENHHRALDDAKAC 580 Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + E + D + ++ V + R+ +++ Sbjct: 581 GEIFIKCLEILAEKNVKTIDDIQNVFEGCWNYQKANSYHAIILVKN-YVGLRNLYKIVSK 639 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L R L S A L+ + E K + + V Sbjct: 640 THLEYFHKRPRLPRKLLMMHREGLILGSACEAGELYRAILENKDEDEIS-RIVKFYDYLE 698 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + + N ++ A + + +V ++ Sbjct: 699 IQPLGNNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQDEVFRRIL 758 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + + L +D L E F Y R + + Sbjct: 759 MAGQGF-----------SDADNQAPLYFRTTDEMLEE--FEYLGREKCYEVVVTNTNLIA 805 Query: 422 EHRKKML------TRSRIEEYKNKLQSLSG----EYKGDEGKEGLINALYEYLQWVI 468 + + +L +IE + +++ L+ E GD E + + + L +I Sbjct: 806 DMCEDILPIPEGTFPPKIEGAEEEIRMLAENKAREIYGDPLPEIVEKRMEKELNSII 862 >gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313] Length = 1442 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 145/477 (30%), Gaps = 56/477 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D+ + V++ ++ + +++ F + V +TGIT Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKI-KEGKIVDTFSTF---VNPEIPIPEFVVKLTGIT 484 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + +F T + +N FD + R+ + + Sbjct: 485 DDMVSDAPTID----KVLPEFLEFVGTSPLVAHNAVFDTGFIRHNAR-------LINRNV 533 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ KL +A G+ N H A D A Sbjct: 534 DNPVIDTLELSRQMF-------------PELKKHKLDVVAKHLGVSLENHHRALDDAKAC 580 Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + E + D + ++ V + R+ +++ Sbjct: 581 GEIFIKCLEILAEKNVKTIDDIQNVFEGCWNYQKANSYHAIILVKN-YVGLRNLYKIVSK 639 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L R L S A L+ + E K + + V Sbjct: 640 THLEYFHKRPRLPRKLLMMHREGLILGSACEAGELYRAILENKDEDEIS-RIVKFYDYLE 698 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + + N ++ A + + +V ++ Sbjct: 699 IQPLGNNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQDEVFRRIL 758 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + + L +D L E F Y R + + Sbjct: 759 MAGQGF-----------SDADNQAPLYFRTTDEMLEE--FEYLGREKCYEVVVTNTNLIA 805 Query: 422 EHRKKML------TRSRIEEYKNKLQSLSG----EYKGDEGKEGLINALYEYLQWVI 468 + + +L +IE + +++ L+ E GD E + + + L +I Sbjct: 806 DMCEDILPIPEGTFPPKIEGAEEEIRMLAENKAREIYGDPLPEIVEKRMEKELNSII 862 >gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1444 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +F I+ +N FD + + + + Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L++ R +Y + +L L I H A D A Sbjct: 533 ADNAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W + + ++ + + + + + + P Sbjct: 580 TAYLAWKLIKDAKEMHDINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLIT 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V S ++ + L + ++ + K V + Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIVGTACSQGELFEAMMQKGMQAAEKVVEFYDFIEI 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D K E L + R A N Y ++Y Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIYR 755 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 +L ++ +D L E F + + D Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVVD 809 Query: 420 WLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 W+E K L +I+ ++++++ ++ + G+ E + L + L+ +I Sbjct: 810 WMEELKPIKDELYTPKIDGAEDEVRNMSYDMAHQLYGENLPEIVEARLEKELKSII 865 >gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745] gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus pentosaceus ATCC 25745] Length = 1437 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 67/480 (13%), Positives = 151/480 (31%), Gaps = 55/480 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ + + V++ I+ E F + + +T I Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKM-ENGNVIDQFEEF---IDPGFPLSETTINLTSI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E E + +F+ II +N+ FD + + R+ + Sbjct: 475 TDEMVRGS-MSEKEVFTKFREFYED---AIIVGHNVTFDIGFMNTGYLRHGMEEI----- 525 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y ++L LA G+ + H A D Sbjct: 526 -KNPIIDTLTLARFLY-------------PTLKGYRLNTLAKKFGVALEHHHRAIYDSET 571 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + + + Y + + + + ++ P + + Sbjct: 572 TGHLCYLFLKDAEERYGIEYHDQLNDHMTENEAYKHARPSHAILIAKTQAGLKNLFKLVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S ++ + + ++ ++ + Sbjct: 632 MSNVKYYYRVPRIPRSELEKLREGIIVGSACSSGDVFTAMMQKGYADARRKAKFYDYLEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D+K+ E +++ +L A + Y + + ++ Sbjct: 692 MPKPVYQPLIEQELVSDNKKLEEIIANIVKLGEDLDIPVVATGDVHYLNPQDYIYRKILI 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF-------RYRARNFPHTLSEK 415 + +L ++ +D L + F + N S K Sbjct: 752 NSQGGANPLNRS--------ELPDVHFRTTDEMLEDFSFLGPEVAHKIVVEN-----SNK 798 Query: 416 EKQDWLEHR---KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + K L ++ +++++ LS + G+ E + L + L +I Sbjct: 799 IADSVDDGISPVKDKLYTPKMPGAEDRIKQLSMDRAHALYGEVLPEIVQERLDKELTSII 858 >gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1444 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T + + F + I+ +N FD + + + Sbjct: 483 TDDMVKGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 531 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L++ R +Y + +L L I H A D Sbjct: 532 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 578 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L W + + ++ + Y + + + + P A Sbjct: 579 ATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 638 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y V S ++ + L + ++ + K Sbjct: 639 TMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIE 698 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K E L + R A N Y ++Y Sbjct: 699 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIY 754 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418 +L ++ +D L E F + + Sbjct: 755 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 808 Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 DW+E K L +I+ ++++++ ++ + G+ E + L + L+ +I Sbjct: 809 DWIEDLKPIKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSII 865 >gi|330860011|emb|CBX70338.1| hypothetical protein YEW_LE47370 [Yersinia enterocolitica W22703] Length = 120 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 79/114 (69%), Positives = 88/114 (77%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT Sbjct: 7 QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNF Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFL 120 >gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] Length = 1444 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 57/447 (12%), Positives = 119/447 (26%), Gaps = 43/447 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +VI+D ET G D+ + + V++ + E + + F + + +T Sbjct: 421 NTYVIFDVETTGLSAIYDKVIELSAVKM-KNGEVLARFDEF---IDPGFPLSEQTTNLTS 476 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E E + F II +N+ FD + + R+ + Sbjct: 477 ITDEMVRGS-KSEEEVFKMFKDF---CAGTIIAGHNVSFDMGFMNTGYRRHQMEEI---- 528 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R +Y ++L L+ + + H A D Sbjct: 529 --TEPVIDTLPLARFLY-------------PNMRGYRLNTLSKKFKVALEHHHRANFDAE 573 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L++ + K +E Y + + ++ P + Sbjct: 574 ATGHLLYKFLKDAEKRYEIRYVDELNQHMAENDAYKHARPFHVTLLAQNQAGLKNLFKLV 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + RY V + + + L ++ ++ Sbjct: 634 SLSNVRYFHRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYAEALRRARYYDYIE 693 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P D + +L+ L K + +Y Sbjct: 694 IQPRPNYAPLLETHVIADRDQLD---DILQNMVKLGAELKKKVVATGDVHYINPHDGIYR 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415 + + ++ +D L E R N Sbjct: 751 RILINSQGGANPLNRT----KRPDVHFRTTDEMLEEFSFLGADTAKRVVVENSHAI--AD 804 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQS 442 + K L ++ + ++Q Sbjct: 805 MIDADIRPVKDKLYTPHMKGAEQEIQD 831 >gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1440 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 76/476 (15%), Positives = 143/476 (30%), Gaps = 54/476 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + D + A V+V + + +++ + DP+ V +TGIT Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKV-KAGQIVDTYATL---IDPERALDPKIVELTGIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E QF ++ +N FD + R D + Sbjct: 483 NEMVAGQPK-LKEALDGFRQF---ARGAVLVAHNAEFDVGFLNQCAERLGLDPWE----- 533 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R +Y G ++KL+ L ++ VN H A AD AT Sbjct: 534 -EPVIDTLALARVLY-------------PGEKNYKLKTLTQKFSVDLVNHHRALADSEAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + + + N LR IDI + P + Sbjct: 580 AKVFVHMLKDAKARGIHNLLDMN--HLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSI 637 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303 H +Y V S R + L ++ +G I + + Sbjct: 638 AHTQYLHRVPRIPKSALARHREGLLIGTACRQGELVEAFFRGKSEDEIDTLLEFYDYLEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P+ + + E ++ E L + ++ + D + Sbjct: 698 QPVSHYEPLVREGVVASFEQVRELLRNIVDIGKRLNKPVVATGDVHYLDEHDAIFREIFL 757 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 VD + L+ +D L E F + + + Sbjct: 758 QSQKVDTKQPP------------LHFRTTDEMLEEFAF--LGEEDARAVVIDNPRRLVAL 803 Query: 424 RK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + L I+ +++++ L+ + GD E + L L +I Sbjct: 804 CEDVKPIPDELHTPVIDGAEDEIRRLAYDKAKRIYGDPLPEIVEKRLERELNAIIS 859 >gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10] gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10] Length = 1433 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 76/478 (15%), Positives = 140/478 (29%), Gaps = 46/478 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + +V++D ET G + + A V+V + E I+ E F P + + Sbjct: 415 MEDTYVVFDVETTGLSAVYNTIIELAAVKV-QGGEIIDRFESFA---NPHEPLSPTIIDL 470 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + F + I+ +N FD + + + D Sbjct: 471 TGITDDMVADAPEIH----DVLKDFKAWCGNDILVAHNAAFDMAFLDAGYQKAGMD---- 522 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D L++ R +Y +++L L IE V+ H A D Sbjct: 523 --KAANPVIDTLEMGRMLYPTF-------------KNYRLNTLCKKFNIELVSHHRAIYD 567 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT L+W + + + N D + P A Sbjct: 568 AEATGHLLWKMVRDAVEKGITTHSALN--DQSSPDDYKKQRPNHCTIYAKNAEGLKNLYK 625 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 H Y V S + + L + ++ Sbjct: 626 LVSKAHIDYFFRVPRLPKSVLVEHREGLLIGSACDQGEVFDGLMQKAPEEVESTAAFYDF 685 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +MP + + D + L++ + A N Y + V + Sbjct: 686 LEVMPPSNYQHLIEKEIIRDELELKSVIKNLIKLGETVNKPVVATGNVHYLNEEDHVYRK 745 Query: 360 L---YDGFFADVDRQIMDRIL-RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + G ++R + ++ RT E L + ++R N Sbjct: 746 ILIASQGGANPLNRITLPKVHFRTTNEMLDCFSFLSEEKR-----QEIVVTNSRKI--AD 798 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E + + L IE +++ + + GD E + L + L +I Sbjct: 799 EIDEI-KPIPDDLYTPHIEGADEEMRQMCYDRAKSIYGDPLPELVEKRLEKELTSIIS 855 >gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] Length = 1436 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 65/475 (13%), Positives = 139/475 (29%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ + + V++ I+ E F + + +T I Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKM-ENGNVIDEFEEF---IDPGFPLSETTINLTSI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E E + +F+ II +N+ FD + + R+ + Sbjct: 475 TNEMVRGS-LSEKEVFTKFREFYED---AIIVGHNVTFDIGFMNTGYLRHGMEEI----- 525 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y ++L LA + + H A D Sbjct: 526 -KNPIIDTLTLARFLY-------------PTLKGYRLNTLAKKFNVALEHHHRAIYDAET 571 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + + + Y + + + + ++ P V + Sbjct: 572 TGHLCYLFLKDAEERYGIEYHDQLNDHMTENDAYKHARPNHAVLIAKTQAGLKNLFKLVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S R+ + + + + Sbjct: 632 LSNVKYFYRVPRIPRSELERLREGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYDYLEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + D + E ++ L + +Y Sbjct: 692 MPKPVYQPLIDQEIVSDTNKLEE---IIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRK 748 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + +L ++ +D L FR+ H + + + Sbjct: 749 ILINSQGGANPLNRT----ELPDVHFRTTDEMLE--AFRFLGEETAHQIVVENPNQIADS 802 Query: 424 R------KKMLTRSRIEEYKNKLQSLSGE----YKGDEGKEGLINALYEYLQWVI 468 K L ++ +++++ L+ + G E E + L + L +I Sbjct: 803 IDDISPVKDKLYTPKMPGAEDRIKQLAMDQAHALYGKELPEIVSERLDKELTSII 857 >gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] Length = 1436 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 65/475 (13%), Positives = 139/475 (29%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ + + V++ I+ E F + + +T I Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKM-ENGNVIDEFEEF---IDPGFPLSETTINLTSI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E E + +F+ II +N+ FD + + R+ + Sbjct: 475 TNEMVRGS-LSEKEVFTKFREFYED---AIIVGHNVTFDIGFMNTGYLRHGMEEI----- 525 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y ++L LA + + H A D Sbjct: 526 -KNPIIDTLTLARFLY-------------PTLKGYRLNTLAKKFNVALEHHHRAIYDAET 571 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + + + Y + + + + ++ P V + Sbjct: 572 TGHLCYLFLKDAEERYGIEYHDQLNDHMTENDAYKHARPNHAVLIAKTQAGLKNLFKLVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S R+ + + + + Sbjct: 632 LSNVKYFYRVPRIPRSELERLREGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYDYLEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + D + E ++ L + +Y Sbjct: 692 MPKPVYQPLIDQEIVSDTNKLEE---IIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRK 748 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + +L ++ +D L FR+ H + + + Sbjct: 749 ILINSQGGANPLNRT----ELPDVHFRTTDEMLE--AFRFLGEETAHQIVVENPNQIADS 802 Query: 424 R------KKMLTRSRIEEYKNKLQSLSGE----YKGDEGKEGLINALYEYLQWVI 468 K L ++ +++++ L+ + G E E + L + L +I Sbjct: 803 IDDISPVKDKLYTPKMPGAEDRIKQLAMDQAHALYGKELPEIVSERLDKELTSII 857 >gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] Length = 1441 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 64/476 (13%), Positives = 137/476 (28%), Gaps = 51/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + I+ E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAIYDSIIELAAVKM-HKGNVIDKFEEF---IDPGHPLSATTIQLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +A+ + F I+ +N FD + + + + Sbjct: 481 TDDMVRGS-KSQAQVLKEFAAFTKD---TILVAHNASFDMGFLNTGYEKEGLE------K 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R ++ S +L LA + H A D Sbjct: 531 TTQPVIDTLELSRLLH-------------PHLKSHRLNTLAKRYNVALEQHHRAVFDSET 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L + ++ +Y + L +N P + Sbjct: 578 TGHLCHIFLKEAANDHGLIYHDQLNTNLHPEEVFKNGRPFHATIFAKHQAGLKELFKVVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A + +Y V S + ++ ++ + Sbjct: 638 ASNVQYFYRVPRILRSMLIENRDSFLIGSGCSEGEVFEAMMQKGYEEAKEKAKFYDYIEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + + E + L + L A N Y + + ++ Sbjct: 698 MPKAVYRPLIDKELIRNEHHLEEIIKNLVKLGEELDIPVVATGNVHYLNPEDKIYREILL 757 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP------HTLSEKE 416 + + + ++ L E F +T + Sbjct: 758 TSVNNGQKLNYPDVH-----------FRTTNEMLDEFAF--LGEEKAFEVVVTNTHWVND 804 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + K L +IE ++++ L + E+ G+E E + + + L+ +I Sbjct: 805 QLEVIIPIKDDLYTPKIEGAEDEITKLSYDKAHEWYGEELPEIVEKRIDKELKSII 860 >gi|240142208|ref|YP_002966718.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1] gi|240012152|gb|ACS43377.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1] Length = 491 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 82/411 (19%), Positives = 137/411 (33%), Gaps = 26/411 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D ET DV + FA V + + + V + + +P A+ + Sbjct: 10 VCWDTETSDTDVRHGQIFDFAAVTSNLTDLVETGTRTVRIRRLS-YCIPAYGALSTNRLD 68 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 P E + IH S ++GYN + FD+ R F+RN D Y Sbjct: 69 PYALEATDRTDEFSAAASIHGILSPKPGRPLVVLGYNILSFDEEIVRTTFFRNLLDPYAT 128 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S G R+DLL R +A PD DDG SF+L+ +A ANGI AHDA D Sbjct: 129 SAK-GVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSFRLERIAPANGIGL-RAHDALED 186 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 ATLAL +R P +E ++ + ++ D + A + Sbjct: 187 ARATLALARRLRSSVPAAWETCLRASDRYEAERVFDAAAAR-----NEPVWVLAGGNAPV 241 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 A+ ++ S + + + L +L N+ Sbjct: 242 LEPAYPVGKNGRLLVLARSSRLAESMQIGADAL---------DLDDWRDGSFIRCRTNRM 292 Query: 301 PILMPIDYCKKEHFER---WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 P+++ + + + A + + + Sbjct: 293 PVVLSAAAAAVLSELHPGAFPVPPGDVRAPGAGWSEFKGALASRVADADPWTKPTGPTAE 352 Query: 358 SQLYDGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARN 407 ++YDGF ++ M E+ + F D R+ E R + Sbjct: 353 ERIYDGFVDWGEKDRMRHFRYLGTWEERAAAFAGFRDSRIREFAARAIVEH 403 >gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] Length = 1397 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 72/475 (15%), Positives = 141/475 (29%), Gaps = 51/475 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G + + + V+V + + I+ F + +TGI Sbjct: 384 TFVVFDLETTGLNKFKNEIIEIGAVKV-KSGKVIDEFSSF---VKPGESIPNKITELTGI 439 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + R +E I F + I+ +N FD + + + Sbjct: 440 TNEMVSRAPDIE----GVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQ-------- 487 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G+ + +LD + A PD ++ KL LA + N H A D A Sbjct: 488 -GDISYPVLDTLTLSRALLPDL----------SNHKLNTLARHLNVRLDNHHRAVEDARA 536 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + N+ + V + + L++ Sbjct: 537 TSEIFINFLSNIKNEGIETVPGINRLSTKINWRELPTYHTVIFAKNKQGLKDIYRLVSES 596 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y+ I + R + S A +L+ IK + Sbjct: 597 HLNYFYRKPRILKSHLIQCRKNLIIGSACEAGQLY-RSIINNKPYREIIKIASFYDYLEI 655 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P K + + N + + L A + + D+ ++ Sbjct: 656 QPTGNNKFLVGNKVESIDELEKINYQIYKLGKKLNKPVVATCDVHFLDPEDDIYRKVLQA 715 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL------FFRYRARNFPHTLSEKEK 417 E+ + L ++ L E R P +S++ + Sbjct: 716 GQGYD-----------EAEEQAPLYFRTTNEMLEEFSYLGKKAAREVVIENPAKISDQIE 764 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + L+ L IE ++++ + + E GD + L + L+ +I Sbjct: 765 E--LKPLPDGLFAPEIEGANDQIRKMTYQRAHELYGDPLPSIIEERLEKELKAII 817 >gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] Length = 1449 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 70/479 (14%), Positives = 135/479 (28%), Gaps = 53/479 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + A VR+ + S + F + V +TGI Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEGSFDEF---IDPGHPLSRTTVELTGI 477 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E R +F I+ +N FD + + + Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242 T L W+ ++ + L + + P + A N + Sbjct: 575 TGHLAWIFVKEAMEKHGMLLHEDLNRHVGGENSFKAARPFHATILAKTQAGLKNLFKLIS 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 ++ + D V S +++ + L + ++ V K Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARKLAEFYDYIE 694 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP + + + + L + N + + + +D +Y Sbjct: 695 VMPKEVYAHLIETELVKNESDLEDIIRNLIEIGNELGKVVVATGNVHYLNEEDA---IYR 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415 + + P ++ +D L N K Sbjct: 752 KILINSMGGANPLNRHSLP----AVHFRTTDEMLTAFQFLGPDTAKEIVVTN-----PNK 802 Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L +I + ++ L + E GD E + L + L +I Sbjct: 803 IADMCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861 >gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] Length = 1367 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 73/471 (15%), Positives = 132/471 (28%), Gaps = 42/471 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D+ET G D +D + V++ + + ++ + ITGI Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTL---IKPSREISRRSSEITGI 412 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E F II +N FD + R + + + Sbjct: 413 TQEMLENK-RSIEEVLPEFLGFLENS---IIVAHNANFDYRFLRLWIKKVMGLDWERPYI 468 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + L MR S+ L + G+ H A D Sbjct: 469 DTLALAKSLLKMR--------------------SYSLDSVVEKLGLGPFRHHRALDDARV 508 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + E K+ + L+ ID + P + Sbjct: 509 TAQVFLRFVEMMKKIG--ITKLSEIENLKDTIDYTALKPFHCTILVQNKKGLKNLYKLVS 566 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302 + +Y V S + + L L+G ++E+ Sbjct: 567 DSYIKYFYGVPRILKSALIENREGLLVGSACISGELGRAALEGASDSELEEIAKFYDYIE 626 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP+D ++ + K L + ++ N + L Sbjct: 627 VMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKF-VVMTGDVHFLDPEDARGRAALLA 685 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 LRT E L F D E+ R P+ + ++ Sbjct: 686 PQGNRNFENQPALYLRTTEEMLEKAMEIFEDE---EIA-REVVIENPNRI-ADMIEEVQ- 739 Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 +K L IE +++L + E GD E + + + L +I Sbjct: 740 PLEKKLHPPIIENADEIVRNLTMKRAYEIYGDPLPEIVQKRVEKELNAIIN 790 >gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT] gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium novyi NT] Length = 1444 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 67/482 (13%), Positives = 148/482 (30%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ +F V++ + I+S F + + +T Sbjct: 429 DTFVVFDLETTGFSSQYDKIIEFGAVKI-KNGNIIDSFSAF---VNPEIKIPYKITELTS 484 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + + +F ++ +N FD + R + Sbjct: 485 ITNDDVKDAETID----KVLPKFIKFAEGTVLVAHNSNFDMSFIRKNCKDLNIECNYT-- 538 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + + +KL +A G+ N H A D Sbjct: 539 -----VMDTIPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 580 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 AT ++ + ++ D N L + + T + + ++ LI+ Sbjct: 581 ATGDILVHCFKLLKEMNITYLDDLNNKFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 640 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV--PIKEVHLNK 299 YK + +L + + S A ++ + E K + IK + Sbjct: 641 FSNLDYFYKKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKSNEDLKEIIKFYDYLE 700 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +M ++ ++ + K + L N ++ DV Sbjct: 701 IQPIMNNEFMLRKGIVKNQDQLKEINRKIYELGIN-----------NNMPVVATGDVHFL 749 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR--------NFPHT 411 + E L L ++ L E F Y N P Sbjct: 750 DPKDGKFREILMAGQGF--SDAENQPPLYLKTTNEMLKE--FEYLGEDIAKEVVINNPQK 805 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 ++ ++++ +I+ + +++++ E G+ + + + L + L + Sbjct: 806 IANAV--EFVKPIPDETFPPKIDGAEEDIRNMTLEKAYSIYGNPLPKVVHDRLEKELNSI 863 Query: 468 IP 469 I Sbjct: 864 IN 865 >gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8] gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8] gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima] Length = 1367 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 74/473 (15%), Positives = 135/473 (28%), Gaps = 46/473 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D+ET G D +D + V++ + + ++ ++ ITGI Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKI-QGGQIVDEYHTL---IKPSREISRKSSEITGI 412 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E F II +N FD + R + + + Sbjct: 413 TQEMLENK-RSIEEVLPEFLGFLEDS---IIVAHNANFDYRFLRLWIKKVMGLDWERPY- 467 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + S+ L + G+ H A D Sbjct: 468 -------------------IDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARV 508 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + E K+ K L+ ID + P + Sbjct: 509 TAQVFLRFVEMMKKIGITKLSEMEK--LKDTIDYTALKPFHCTILVQNKKGLKNLYKLVS 566 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302 + +Y V S + + L L+G ++E+ Sbjct: 567 DSYIKYFYGVPRILKSELIENREGLLVGSACISGELGRAALEGASDSELEEIAKFYDYIE 626 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP+D + +D +R E L + ++F + + +D + Sbjct: 627 VMPLDVIA---EDEEDLDRERLKEVYRKLYRIAKKLNKFVVMTGDVHFLDPEDARGRAAL 683 Query: 363 GFFADVDRQIMDR--ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 LRT E L F D E+ R P+ + ++ Sbjct: 684 LAPQGNRNFENQPALYLRTTEEMLEKAIEIFEDE---EIA-REVVIENPNRI-ADMIEEV 738 Query: 421 LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 +K L IE +++L + E GD E + + + L +I Sbjct: 739 Q-PLEKKLHPPIIENADEIVRNLTMKRAYEIYGDPLPEIVQKRVEKELNAIIN 790 >gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925] gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum BKT015925] Length = 1443 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 67/482 (13%), Positives = 149/482 (30%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G A D+ + V++ + I+S F + +T Sbjct: 428 DTFVVFDLETTGFSSAYDKIIEIGAVKI-KNGNIIDSFSTF---VNPEIKVPYNITELTS 483 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + +F ++ +N FD + R D Sbjct: 484 ITNDDVKNADTID----SILPKFIEFCGDSVLVAHNANFDMSFIRKNCNDLNIDINYT-- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + + +KL +A G+ N H A D Sbjct: 538 -----VMDTVPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 579 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 AT ++ + + D NK L + + T + + ++ LI+ Sbjct: 580 ATGDILLCCFKLLDDMKITSLDSLNKEFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299 ++ + +L + + S A ++ + + + + IK + + Sbjct: 640 YSNLDYFFRKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKSQEELKQMIKFYNYLE 699 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +M ++ K+ + K + L + N ++ DV Sbjct: 700 IQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGK-----------ENGLPVVATGDVHFL 748 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR--------NFPHT 411 + E L L ++ L E F+Y P Sbjct: 749 DPKDAKFREILMKGQGF--SDAEDQPPLYLKTTNEMLKE--FQYLGDDACKEVVIYNPQK 804 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 ++E+ + ++ +IE + +++++ E G+ + + + L + L + Sbjct: 805 IAEEV--EVVKPIPDETFPPKIEGAEEDIRNMTLEKAYSIYGNPLPKVVHDRLEKELNSI 862 Query: 468 IP 469 I Sbjct: 863 IN 864 >gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] Length = 1442 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 59/475 (12%), Positives = 130/475 (27%), Gaps = 47/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + E +++ E F + +T I Sbjct: 426 TYVVFDVETTGLSAVYDTIIEIAAVKI-QDGEVVDTFERFA---NPGRPLSNTIIELTHI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + S + ++ ++ +N FD + + Sbjct: 482 TDDMLKDAP----DISEVLKEYNEWIGDAVLVAHNASFDIGFLNVGLKKAGLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + N D L++ R +Y +++L LA +E H A D A Sbjct: 532 SNNPVIDTLELGRFLY-------------PDFKNYRLNTLAKKFNVELTQHHRAIYDTEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + + Y + + + P + Sbjct: 579 TGQIFLKMLK-DARNRGITYHDELNQYMGEGGAYKRARPSHCTLLVRTQEGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + + + ++ + + Sbjct: 638 LSHIDYFYRVPRIPRSELQKYREGILVGSGCDKGEVFEGMMQKDPAEVEEIARFYDYLEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + D K E ++ + L ++ + + ++Y Sbjct: 698 HPKEVYAPLIDQELIRDEKALEE---IITKIVRLGEKLNLPVVATGNVHYLNPEDKIYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 P+ ++ +D L F + Sbjct: 755 ILISSQGGANPLNRHRLPD----VHFRTTDEMLACFSF--LGEEKAKEIVVDNTNKIAGL 808 Query: 424 R------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE + +++ S + GD E + L + L+ +I Sbjct: 809 IEDVKPVKDELYTPKIEGAEEEIREQSYKRAKMIYGDPLPEIVEARLEKELKSII 863 >gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195] Length = 1437 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 134/476 (28%), Gaps = 46/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + I F I+ +N FD + + + Sbjct: 475 ITDDMLQDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVD----- 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D N + + Q P ++ Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L R ++ Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420 +L ++ +D L F + + Q Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802 Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++ K L +IE +++ +S + G+E E + + + L+ +I Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858 >gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032] gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus SAFR-032] Length = 1437 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 64/475 (13%), Positives = 135/475 (28%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + E I+ E F + + +TGI Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKI-KGGEIIDRFEAFA---NPHHPLSATTIELTGI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R + Sbjct: 476 TDDMVRDAP----DVVDVVRDFKEWIGQDILVAHNASFDMGFLNTAYKRLL-----KTDK 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R +Y + +L L IE H A D A Sbjct: 527 ASNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDAEA 573 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + + Y + + + Q P + + Sbjct: 574 TGYLMLKMLK-DAAEKDIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVS 632 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + L + ++ + Sbjct: 633 LSHIHYFYRVPRIPRSQLEKYREGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEV 692 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + D + E ++ L ++ + ++Y Sbjct: 693 HPPEVYQHLLQLELVRDERALKE---IITNIVKLGEKLNKPVVATGNVHYLHPEDKIYRK 749 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL------SEKEK 417 +L ++ +D L F + + E Sbjct: 750 ILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTKKVSEM 803 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + ++ K L +IE +++ +S + GD+ + + + + + L+ +I Sbjct: 804 VESIKPIKDDLYTPKIEGADEEIREMSYQMARSIYGDDLPKIVEDRIEKELKSII 858 >gi|320541129|ref|ZP_08040515.1| putative exonuclease I [Serratia symbiotica str. Tucson] gi|320028808|gb|EFW11101.1| putative exonuclease I [Serratia symbiotica str. Tucson] Length = 107 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 66/101 (65%), Positives = 78/101 (77%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F +DYETFG+ ++DRPAQFAGVR D + IE V +C PADDYLP+PEAV IT Sbjct: 7 QNTFYFHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPEAVMIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 GITPQ+A GV EAEF+R+IHQ FS+P TCI+GYNNIRFD Sbjct: 67 GITPQQARAKGVNEAEFARQIHQAFSMPGTCILGYNNIRFD 107 >gi|307069516|ref|YP_003877993.1| putative exonuclease I [Candidatus Zinderia insecticola CARI] gi|306482776|gb|ADM89647.1| putative exonuclease I [Candidatus Zinderia insecticola CARI] Length = 471 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 106/474 (22%), Positives = 205/474 (43%), Gaps = 19/474 (4%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F+ YDYETF + P+QFA +R + + I+ ++ +CKP ++P P+++ + Sbjct: 3 KYNFLWYDYETFNLNKNFTFPSQFASIRTNLNLKIIKKYKIIYCKPDGSFMPCPKSILLN 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I PQ + G+ E +F+ +I++ P T IGYNNI FDD +R +F+RN + Y Sbjct: 63 KILPQYCEKYGIKEYKFANKINKIMLKPYTINIGYNNINFDDIITRFLFWRNLLNPYERE 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N S +D ++++ IY + + ++W + + SFKL D++ NG + H+A DV Sbjct: 123 WKNKCSTYDFFNIIKIIYFINYNSLKWFKKKNKKISFKLSDISKINGYLNKFFHNALFDV 182 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ATL +I++K KLF RNK + K + +++S + ++ Sbjct: 183 NATLFCAKIIKKKNFKLFYKFIKLRNKKNIIK-NILFKKKVFLYLSNKYPFFEKEIFILL 241 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 P+ + K+ +I L+ F + ++ Sbjct: 242 PLFIDNKNKNKLIC------------LNINSNFNNFFDFKKKYNFKKINNYIKIININKY 289 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF--KAIYNKPYTSSSQDVDSQ 359 ++ + K + I+ +N+T + L K YN Y Sbjct: 290 PIIFFNIKKILKKINFKINFNLIKKNITKINNNIKLILNIYKKFNYNYKYKKILNINFDL 349 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + F + D+ + I + ++ F + + L F Y+ + + +S EK+ Sbjct: 350 YNNFFISLNDKYNIKIIKKLNINKIHNKKFYFYNNNIKILCFFYKLKKYKKYISNFEKKI 409 Query: 420 WLEHRKKMLTR--SRIEEYKNKLQSLSGEYK--GDEGKEGLINALYEYLQWVIP 469 W+++ K L + + + KL + +Y ++ K+ ++ L Y + + P Sbjct: 410 WIKYCKINLLKNYNNELNFFEKLFYIKKKYLKCSNKYKKKILYFLINYARKINP 463 >gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] Length = 1439 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 60/476 (12%), Positives = 139/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + + V++ + I+ E F + +T I Sbjct: 419 TYVVFDTETTGLSAIYDRVIELSAVKM-QNSNVIDQFEEF---IDPGFHLSERTTNLTSI 474 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E + +F I+ +N+ FD + + R+ + Sbjct: 475 TDEMVHGS-KSEEEVFKLFREF---CGDAIVVGHNVTFDMGFMNTGYVRHGMHEMQN--- 527 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R +Y ++L LA + + H A D Sbjct: 528 ---PIIDTLTLARFLY-------------PNLRGYRLNTLAKKFDVSLEHHHRAIYDAET 571 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + + +Y + + + ++ P + + Sbjct: 572 TGHLNYLFLKDAEDRYGIVYHDQLNDHMTDNDAYRHARPSHAILLAKTQAGLKNMFKIVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V + + L ++ + ++ + Sbjct: 632 LSNVKYFYRVPRVPRTQLEKYRDGLIVGSACSSGEVFTAMMQKGLDEARQKAGFYDYLEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D + + L +++ L A + Y + + ++ Sbjct: 692 QPKRAYAPLIESGLIADDENLEQILTNMVKLGDELDKPVVATGDVHYLNPQDYIYRKILI 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 + +L L+ +D L + F + + Sbjct: 752 NSQGGANPLNRQ--------ELPDLHFLTTDEMLSDFNF--LGPEKAEEIVVDNTNQIAD 801 Query: 423 HR------KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++++ + + GD + + + L + L+ +I Sbjct: 802 EIEDVHPLKDKLYTPRMEGAEDEIKSRTMDTAHAWYGDPLPKIVSDRLDKELKSII 857 >gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K] gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei subsp. sakei 23K] Length = 1446 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 145/477 (30%), Gaps = 52/477 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + A V++ R E + S + F + +T IT Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKM-RDGEVVASFDEF---IDPERPLSAFTTQLTSIT 480 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EAE +F ++ +N+ FD + + RN D Sbjct: 481 NEMVHGAKK-EAEVLAMFKEFT---GDAVLAGHNVSFDMGFLNAGYERNDIDLI------ 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL L I + H A AD +T Sbjct: 531 DNPVIDTLELSRMLH-------------PEYKNHKLDSLTKRYKINLEHHHRANADAEST 577 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ + ++ + + +++ + P V + A Sbjct: 578 GYLLYKLEKEAAENYDMVNVNQLNDRVGVGEFYKQARPAHAVLMAQTQAGLKNLFKLVSA 637 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Y S + + + ++ + +M Sbjct: 638 SMTEYYYRTPRLPKSKLDALREGILVGSACSNGEVFEAMMQKGYNEALDRAKYYDYIEVM 697 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P D++ E ++R + ++ + + + +Y Sbjct: 698 PKAVYAPLLERELVRDNRALEE---IIRNLVKVGEKLNKPVVATGDAHYLNPEDAIYRKI 754 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLSEKEK 417 +L ++ +D L PEL N +K Sbjct: 755 LIHSMGGANPLNRS----KLPDVHFRSTDEMLTAFDFLGPELAQELVVAN-----PQKIA 805 Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 E K L ++ ++++Q+L + E G E E + L + L+ +I Sbjct: 806 DQIDEIVPVKDKLYTPKMAGAEDEIQTLTMNRAHELYGAELPEIVEARLKKELKSII 862 >gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2] gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2] Length = 1463 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 73/476 (15%), Positives = 134/476 (28%), Gaps = 46/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E IE E F + +TG Sbjct: 420 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIERFERFA---NPHRPLSATIIELTG 475 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E I F + +N FD + + R S Sbjct: 476 ITDDMLKDAP----EVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLL-----NSE 526 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 527 KVQNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 573 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + LY + + + Q P + Sbjct: 574 ATGYLLVKMLK-DAAEKNILYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 632 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L + ++ Sbjct: 633 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDKGEVFEGMMQKSPEEVEDIASFYDYLE 692 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP + + D K E ++ T L ++ + + ++Y Sbjct: 693 VMPPEVYRHLLQLELVRDEKALKE---IIANITKLGEKLNIPVVATGNVHYLNPEDKIYR 749 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 +L ++ +D L F + + + + Sbjct: 750 KILVSSQGGANPLNRH----ELPNVHFRSTDEMLE--AFSFLGEEKAKEIVVKNTRMISE 803 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 E K L +IE ++++ +S E G++ E + + + L+ +I Sbjct: 804 RIEEIKPIKDDLYTPKIEGADDEIRRMSYEKARSIYGEDLPEIVEKRIEKELKSII 859 >gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis] gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1437 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 134/476 (28%), Gaps = 46/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + I F I+ +N FD + + + Sbjct: 475 ITDDMLQDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLL-----EVE 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D N + + Q P ++ Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L R ++ Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420 +L ++ +D L F + + Q Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802 Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++ K L +IE +++ +S + G+E E + + + L+ +I Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858 >gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] Length = 1444 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 58/447 (12%), Positives = 123/447 (27%), Gaps = 43/447 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +VI+D ET G D+ + + V++ + E + + F + + +T Sbjct: 421 NTYVIFDVETTGLSAIYDKVIELSAVKM-KNGEVLARFDEF---IDPGFPLSEQTTNLTS 476 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E E + F II +N+ FD + + R+ + Sbjct: 477 ITDEMVRGS-KTEEEVFKMFKDF---CQGTIIAGHNVSFDMGFMNTGYRRHQMEEI---- 528 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R +Y ++L L+ + + H A D Sbjct: 529 --TEPVIDTLPLARFLY-------------PNMRGYRLNTLSKKFKVALEHHHRANYDAE 573 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L++ + K +E Y + + ++ P + Sbjct: 574 ATGHLLYKFLKDAEKRYEIRYVDDLNQHMAENDAYKHARPFHVTLLAQTQAGLKNLFKLV 633 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + RY V + + + L ++ P +K+ Sbjct: 634 SLSNVRYFHRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYPEALKKARYYDYIE 693 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + ++L + Q Sbjct: 694 IQP----RPNYAPLLETHVIADRDHLDDILQNMVKLGTELKKPVVATGDVHYINPHDGIY 749 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415 + + + RT + ++ +D L E + N Sbjct: 750 RRILINSQGGANPLNRT---RRPDVHFRTTDEMLEEFSFLGEDTAKQVVVDNSHAI--AD 804 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQS 442 D + K L ++ + ++Q Sbjct: 805 MIADDIRPVKDKLYTPHMKGAEQEIQD 831 >gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1] gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 1436 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 72/476 (15%), Positives = 141/476 (29%), Gaps = 47/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G + + A V+V + E I+ F + + +TG Sbjct: 419 DTYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFTSFA---NPHHPLSMTTIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT VE E R+ + + ++ +N FD + F + Sbjct: 475 ITDDMLKDAPDVE-EVLRQFYDWI---GDSVLVAHNASFDIGFLNVGFAKIGLG------ 524 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 525 KVTNPVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 571 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D NK ++ + Q P Sbjct: 572 ATGYLLMRMLKDAQERGILYHDELNKRS-KEEVSYQRSRPFHVTLLAQNDIGLKNLFKLV 630 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H +Y V S + + + + + ++ + Sbjct: 631 SLSHVKYFYRVPRIPRSVLQQHREGILVGSGCDKGEVFDNMIQKAPEEVEEIAQFYDFLE 690 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + K + D E ++R+ L ++ + + ++Y Sbjct: 691 VHPPEVYKPLIDMDYVKDENMIKE---IIRKIVMLGEKLNIPVVATGNVHYLNREDKIYR 747 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 +L + +D L F + +K Sbjct: 748 KILIHSQGGANPLNRY----ELPDVYFRTTDEMLECFSF--LGEEKAKEIVVTNPQKIAS 801 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 E K L RIE + +++ + + E GD E + L + L+ +I Sbjct: 802 LIDEVKPIKDKLYTPRIEGAEEEIREMSYRRAKEIYGDPLPEIVEQRLEKELKSII 857 >gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1437 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 131/476 (27%), Gaps = 46/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + I F I+ +N FD + + + Sbjct: 475 ITDDMLRDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLL-----EVE 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D N + + Q P ++ Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L R ++ Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDVASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLELELVRDEKSLKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420 +L ++ +D L F + + Q Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802 Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 ++ K L +IE +++ +S + E L + + L+ +I Sbjct: 803 LIDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEQLPEIVEARIEKELKSII 858 >gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC 14580] gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580] Length = 1438 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 73/476 (15%), Positives = 134/476 (28%), Gaps = 46/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E IE E F + +TG Sbjct: 420 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIERFERFA---NPHRPLSATIIELTG 475 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E I F + +N FD + + R S Sbjct: 476 ITDDMLKDAP----EVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLL-----NSE 526 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 527 KVQNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 573 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + LY + + + Q P + Sbjct: 574 ATGYLLVKMLK-DAAEKNILYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 632 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L + ++ Sbjct: 633 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDKGEVFEGMMQKSPEEVEDIASFYDYLE 692 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP + + D K E ++ T L ++ + + ++Y Sbjct: 693 VMPPEVYRHLLQLELVRDEKALKE---IIANITKLGEKLNIPVVATGNVHYLNPEDKIYR 749 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 +L ++ +D L F + + + + Sbjct: 750 KILVSSQGGANPLNRH----ELPNVHFRSTDEMLE--AFSFLGEEKAKEIVVKNTRMISE 803 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 E K L +IE ++++ +S E G++ E + + + L+ +I Sbjct: 804 RIEEIKPIKDDLYTPKIEGADDEIRRMSYEKARSIYGEDLPEIVEKRIEKELKSII 859 >gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1] gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga petrophila RKU-1] gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] Length = 1367 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 74/471 (15%), Positives = 131/471 (27%), Gaps = 42/471 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D+ET G D +D + V++ + + ++ + ITGI Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTL---IKPSREISRRSSEITGI 412 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E F II +N FD + R + + + Sbjct: 413 TQEMLENK-RSIEEVLPEFLGFLENS---IIVAHNANFDYRFLRLWIKKVMGLDWERPYI 468 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + L MR S+ L + G+ H A D Sbjct: 469 DTLALAKSLLKMR--------------------SYSLDSVVEKLGLGPFRHHRALDDARV 508 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + E K+ + L+ ID + P + Sbjct: 509 TAQVFLRFVEMMKKIG--ITKLSEIENLKDTIDYTALKPFHCTILVQNKKGLKNLYKLVS 566 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302 + +Y V S + + L L+G ++E+ Sbjct: 567 DSYIKYFYGVPRILKSALIENREGLLVGSACISGELGRAALEGASDSELEEIAKFYDYIE 626 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP+D ++ + K L + ++ N + L Sbjct: 627 VMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKF-VVMTGDVHFLDPEDARGRAALLA 685 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 LRT E L F D E+ R P+ + ++ Sbjct: 686 PQGNRNFENQPALYLRTTEEMLEKAMEIFEDE---EIA-REVVIENPNRI-ADMIEEVQ- 739 Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 +K L IE ++SL + E GD E + + L +I Sbjct: 740 PLEKKLHPPIIENADEIVRSLTMKRAYEIYGDPLPEIVQKRVERELNAIIN 790 >gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367] gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus brevis ATCC 367] Length = 1445 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 61/475 (12%), Positives = 139/475 (29%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + + V+++ Q ++ E F + + +T I Sbjct: 424 TYVVFDVETTGLSAIYDKVIELSAVKMEHQ-NVVDQFEEF---IDPGFPLSEQTTNLTSI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E + +F II +N+ FD + + R+ Sbjct: 480 TDDMVAGS-KSEEEVFKLFREF---CGDAIIVGHNVTFDVGFMNTGYQRHGMAEI----- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y S++L LA + + H A D + Sbjct: 531 -SNPIIDTLTLARFLY-------------PTLKSYRLNTLAKRFHVSLEHHHRAVYDAES 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + ++ Y + + + ++ P + + Sbjct: 577 TGHLNYLFLKDAEDRYDIQYHDQLNDHMTDNDAYKHARPNHAILLAKTQAGLKNMFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A + Y V S + + ++ + + Sbjct: 637 ASNVDYYYRVPRVPRSVLEEYREGIIVGSACSSGEVFTAMMQKGQVEAAAKAKFYDYLEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + D + E + + + + ++ + + D + Sbjct: 697 QPSAAYQPLIDSGLIADRENMEEIVRNMVKLGHDLNKPVVATGDVHFLNPDDYIYRKILI 756 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + + +L ++ +D L + Y + Q + Sbjct: 757 HSQGGANPLNRQ-------ELPDVHFMTTDEMLTDFA--YLGEETAKEIVVTNTQKIADD 807 Query: 424 R------KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 K L R+E +++++ + GD E + + + L+ +I Sbjct: 808 IDEVHPLKDKLYTPRMEGAEDEIRQRTMDTAHAMYGDPLPELVQHRVDRELKSII 862 >gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] Length = 1443 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 73/481 (15%), Positives = 142/481 (29%), Gaps = 59/481 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A D + A V++ + + I+ E F + + +TGI Sbjct: 427 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGQVIDKYESFA---NPHHPLSATTIELTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T VE + + H F I+ +N FD + + + + Sbjct: 483 TDDMVRNAPEVE-QVIKEFHAFI---GDAIVVAHNASFDIGFLYTGYKKFGLED------ 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R +Y + +L L IE H A D A Sbjct: 533 TVHPVIDTLELARLLY-------------PTMKNHRLNTLCKKFNIELTQHHRAIYDTEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + +L +D NK+ + + P+ + Sbjct: 580 TGYLLLQLLKDADELAIKYHDDFNKH-IGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H + V + + + L + K + Sbjct: 639 HSHTKTFYRVPRVTRAVLEQYREGLLVGSGCSNGEVFETMMNKSPEEAEKVARFYDYIEV 698 Query: 304 MPIDYCKKEHFE---RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P R + + L++ L A N Y + + Q+ Sbjct: 699 QPKAVYAPLIERNVVRDEWTLEDIIR--KLVKLGKKLDKPVVATGNVHYLDPTDGMFRQI 756 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 G + + L ++ +D L E F P E + Sbjct: 757 LIGSQGGANILNRSK--------LPEVHFRTTDEMLKEFDFL-----GPDLAKEVVVTNA 803 Query: 421 LEH---------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 + K L +IE +++ +L+ E G+E E + + + L+ + Sbjct: 804 QKVAASIGDVKPIKDDLYTPKIEGSDDEVTNLTYEMAHRIYGEELPEIVKARIEKELKSI 863 Query: 468 I 468 + Sbjct: 864 L 864 >gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] Length = 1434 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 63/476 (13%), Positives = 138/476 (28%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + A V+V + E I+ E F + +TGI Sbjct: 417 TYVVFDVETTGLSSQYDKIIELAAVKV-KDGEIIDKFERFS---NPGERLNETIKNLTGI 472 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E ++ F I +N FD + F R Y Sbjct: 473 TDDMLIDAPPIE----SVLNDFKDFVGDAIYVAHNASFDMGFIDTGFDRLGY-------- 520 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G + ++D + + + + L LA G+E H A D Sbjct: 521 -GPTENGVIDTLELSRTINTEMGK----------HGLNFLAKKYGVELTQHHRAIYDAET 569 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++++ + + K + + + ++ +++ Sbjct: 570 TAHIFVKMLKQMETLGVTNHKEIDLKLSNKDAYKRARPMHVTLIVQNQKGLKNLFKIVSD 629 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I +L + R + S +FT ++ K Sbjct: 630 SMVKYFYRTPRIPRSLLNEYREGILVGSACDNGEVFT--AVMQKDQEEVEKIARYYDYLE 687 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D++ E + I + + Sbjct: 688 VQPKALYQHLLDKDLIRDNETMEEIYQRI----LDVGEKLDIPVLATGNVHYLNEHDKIA 743 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 +T P+ + +D L F + + + + + Sbjct: 744 REILIASNPGNPLNRQTLPD----AHFRTTDEMLD--AFHFLGEEKAYEIVIKNTNELAD 797 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + L I+ +++ + + G+E E ++ L + L +I Sbjct: 798 RIETVIPIQDKLFTPNIDGANEEIREMSYARARSIYGEELPEIVVARLEKELDSII 853 >gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] Length = 1451 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 142/475 (29%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ + A V++ + I++ E F + + +T I Sbjct: 432 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 487 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E R +F CII +N FD + + R+ + + W Sbjct: 488 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 542 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R +Y F+L LA I+ + H A D A Sbjct: 543 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 584 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + + + +D NK+ + N + Sbjct: 585 TGFIYYAMLKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 644 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S + + L ++ + ++ + Sbjct: 645 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 703 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + D+ NL + Sbjct: 704 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 759 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417 + + + R ++L + +D L E F A+ P+ L ++ Sbjct: 760 KILIHSQAGANPLNRL--KKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 817 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + K L ++E + + L + + GD E + L + L+ VI Sbjct: 818 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 870 >gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33] gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33] gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 05ZYH33] gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 98HAH33] gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1] gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14] Length = 1463 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 60/450 (13%), Positives = 114/450 (25%), Gaps = 40/450 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + R F ++ +N FD + + R Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + +L + + Sbjct: 577 TGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + D L + +K + Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D E + L + L + + + Sbjct: 697 MPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415 L G + + P L + + L E F AR T Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813 Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 + + K L IE+ + + L Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843 >gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3] gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3] Length = 1463 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 61/450 (13%), Positives = 114/450 (25%), Gaps = 40/450 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + R F ++ +N FD + + R Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + +L + + Sbjct: 577 TGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + D L V +K + Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGVDEAVKTAAYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D E + L + L + + + Sbjct: 697 MPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415 L G + + P L + + L E F AR T Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813 Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 + + K L IE+ + + L Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843 >gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] Length = 1463 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 60/450 (13%), Positives = 113/450 (25%), Gaps = 40/450 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + R F ++ +N FD + + R Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L++ + + + +L + + Sbjct: 577 TGRLLFTFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + D L + +K + Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D E + L + L + + + Sbjct: 697 MPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415 L G + + P L + + L E F AR T Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813 Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 + + K L IE+ + + L Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843 >gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5] gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5] Length = 1437 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 134/476 (28%), Gaps = 46/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + I F I+ +N FD + + + Sbjct: 475 ITDDMLQDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVD----- 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D N + + Q P ++ Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L R ++ Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420 +L ++ +D L F + + Q Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEKKAKEIVVTNTQKVAS 802 Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++ K L +IE +++ +S + G+E E + + + L+ +I Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858 >gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1444 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 142/475 (29%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ + A V++ + I++ E F + + +T I Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E R +F CII +N FD + + R+ + + W Sbjct: 481 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R +Y F+L LA I+ + H A D A Sbjct: 536 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + + + +D NK+ + N + Sbjct: 578 TGFIYYAMLKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S + + L ++ + ++ + Sbjct: 638 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + D+ NL + Sbjct: 697 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 752 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417 + + + R ++L + +D L E F A+ P+ L ++ Sbjct: 753 KILIHSQAGANPLNRL--KKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 810 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + K L ++E + + L + + GD E + L + L+ VI Sbjct: 811 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 863 >gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118] gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118] Length = 1444 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 142/475 (29%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ + A V++ + I++ E F + + +T I Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E R +F CII +N FD + + R+ + + W Sbjct: 481 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R +Y F+L LA I+ + H A D A Sbjct: 536 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + + + +D NK+ + N + Sbjct: 578 TGFIYYAMLKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S + + L ++ + ++ + Sbjct: 638 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + D+ NL + Sbjct: 697 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 752 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417 + + + R ++L + +D L E F A+ P+ L ++ Sbjct: 753 KILIHSQAGANPLNRL--KKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 810 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + K L ++E + + L + + GD E + L + L+ VI Sbjct: 811 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 863 >gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429] gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429] Length = 1362 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 74/479 (15%), Positives = 147/479 (30%), Gaps = 51/479 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G + D + V+ R + I + F +TGI Sbjct: 343 TYTVFDLETTGTNAKFDEIIEIGAVKY-RDGKVINTFSSF---VKPTKSISEFTQKLTGI 398 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E +F + ++ +N FD + R + R + Sbjct: 399 TDEMVKDAKSIE----EVFPEFLKFIDGTVLVAHNADFDYGFIREVNRRLY--------- 445 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + LD ++ ++ SF L L + H A D Sbjct: 446 NKELDFAYLDTLKLSKVLLRGKVK---------SFGLGKLVEYFKLGPFKHHRAFEDASV 496 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T L L+ + + L N + I+ H++ + L Sbjct: 497 TADLFGKLLELLLKRGIKTLGQVNNLKNTSSISTIRTKKQFNHITILVRDKVGLKNLYKL 556 Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEV 295 V+ H +Y V ++ + L +S ++ + L S + + ++ + Sbjct: 557 VSDAHVKYFKYVPFVPKKELIKYREGLLLGTGCESGEIFQALTGSSTDEE-----ILEML 611 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P+D E +KR E L + + Sbjct: 612 KDYDYVEIFPLDTIVSVEREVAKQVYKRLYELAKRLD-LPVVMVSNAHFLEPEDIKARHV 670 Query: 356 --VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 + + D+ + LRT E + F D ++ + ++ Sbjct: 671 LLSPIEKSNPHDDDLRDKDAKLYLRTTDEMMKEAFEIFEDEKIAY----EIVVENTNKIA 726 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 +D + K+ L IE K++SL + E GD + + L + L+ +I Sbjct: 727 NNMIEDV-KPIKRKLHPPIIEGADEKVRSLSIKRAKELYGDPLPDVIEKRLEKELESII 784 >gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905] gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905] Length = 1443 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 145/478 (30%), Gaps = 53/478 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A D + A V++ + + I+ E F + + +TGI Sbjct: 427 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGQVIDKYESFA---NPHHPLSATTIELTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T VE + + H F I+ +N FD + + + + Sbjct: 483 TDDMVRHAPEVE-QVIKEFHAFIGDG---IVVAHNASFDIGFLYTGYKKFGLEG------ 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R +Y + +L L IE H A D A Sbjct: 533 TTHPVIDTLELARLLY-------------PTMKNHRLNTLCKKFNIELTQHHRAIYDTEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + +L +D NK+ + + P+ + Sbjct: 580 TGYLLLQLLKDADELVIKYHDDFNKH-IGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H + V + + + L + + + Sbjct: 639 HAHTKTFYRVPRVTRAVLEQYREGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEV 698 Query: 304 MPIDYCKKEHFE---RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P R + + L++ L A N Y + + Q+ Sbjct: 699 QPKAVYAPLIERNVVRDEWTLEDIIR--KLVKLGKKLDKPVVATGNVHYLDPTDAMFRQI 756 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSE 414 G + + L ++ +D L E F A+ +++ Sbjct: 757 LVGSQGGANILNRSK--------LPEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVAD 808 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++ K L +IE +++ +L+ E G+E E + + + L+ ++ Sbjct: 809 SIGD--VKPIKDDLYTPKIEGSDDEVTNLTYEMAHHIYGEELPEIVKARIEKELKSIL 864 >gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT 5713] Length = 1444 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 143/475 (30%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ + A V++ + I++ E F + + +T I Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E R +F CII +N FD + + R+ + + W Sbjct: 481 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R +Y F+L LA I+ + H A D A Sbjct: 536 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + + + +D NK+ + N + Sbjct: 578 TGFIYYAMLKDAEEKQILYHDDFNKHIGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S + + L ++ + ++ + Sbjct: 638 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + D+ NL + Sbjct: 697 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 752 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417 + + + R ++L ++ +D L E F A+ P+ L ++ Sbjct: 753 KILIHSQAGANPLNRL--KKLPDVHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 810 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + K L ++E + + L + + GD E + L + L+ VI Sbjct: 811 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 863 >gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] Length = 1442 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 63/482 (13%), Positives = 136/482 (28%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 426 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPEKITELTS 481 Query: 63 ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT E +I +F ++ +N FD + + Sbjct: 482 ITDDMVDDK-----EAIDKILPRFIEFIGDSVVVAHNAAFDVSFINKNCKDLKIEF---- 532 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NS D + + R +KL +A GI N H A D Sbjct: 533 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 576 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ E + NK L + + T + + N + Sbjct: 577 KATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 636 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y S + L + + LKG +K + Sbjct: 637 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 690 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + +++ ++N ++ ++ K + + ++ Sbjct: 691 ------DFYDYLEIQPLGNNEFLVKNGSVKDEEELKEINKKICELGEFYNKPVVATCDVH 744 Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413 + + + + L ++ L E F Y + + Sbjct: 745 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 800 Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 K E + +IE + ++++ + + GD E + L + L + Sbjct: 801 NKIADMIDEIKPIPEETFPPKIEGAEEDIRNMTIKKAHDIYGDPLPEIVEKRLTKELNSI 860 Query: 468 IP 469 I Sbjct: 861 IN 862 >gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] Length = 1437 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 64/475 (13%), Positives = 135/475 (28%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + E I+ E F + + +TGI Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKI-KGGEIIDRFEAFA---NPHHPLSATTIELTGI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R + Sbjct: 476 TDDMVKDAP----DVVDVVRDFKEWIGQDILVAHNASFDMGFLNTAYKRLL-----KTDK 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R +Y + +L L IE H A D A Sbjct: 527 ASNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDAEA 573 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + + Y + + + Q P + + Sbjct: 574 TGYLMLKMLK-DAAEKDIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVS 632 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + L + ++ + Sbjct: 633 LSHIHYFYRVPRIPRSQLEKYREGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEV 692 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + + D + E ++ L ++ + ++Y Sbjct: 693 HPPEVYQHLLQLELVRDERALKE---IITNIVKLGEKLNKPVVATGNVHYLHQEDKIYRK 749 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL------SEKEK 417 +L ++ +D L F + + E Sbjct: 750 ILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTKKVSEM 803 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + ++ K L +IE +++ +S + GD+ + + + + + L+ +I Sbjct: 804 VESIKPIKDDLYTPKIEGADEEVREMSYQMARSIYGDDLPKIVEDRIEKELKSII 858 >gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] Length = 1468 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 144/478 (30%), Gaps = 53/478 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A D + A V++ + I+ E F + + +TGI Sbjct: 452 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGHVIDKYESFA---NPHHPLSATTIELTGI 507 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T VE + + H F I+ +N FD + + + + Sbjct: 508 TDDMVRHAPEVE-QVIKEFHAFIGDG---IVVAHNASFDIGFLYTGYKKFGLEG------ 557 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R +Y + +L L IE H A D A Sbjct: 558 TTHPVIDTLELARLLY-------------PTMKNHRLNTLCKKFNIELTQHHRAIYDTEA 604 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + +L +D NK+ + + P+ + Sbjct: 605 TGYLLLQLLKDADELVIKYHDDFNKH-IGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVS 663 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H + V + + + L + + + Sbjct: 664 HSHTKTFYRVPRVTRAVLEQYREGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEV 723 Query: 304 MPIDYCKKEHFE---RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P R + + L++ L A N Y + + Q+ Sbjct: 724 QPKAVYAPLIERNVVRDEWTLEDIIR--KLVKLGKKLDKPVVATGNVHYLDPTDAMFRQI 781 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSE 414 G + + L ++ +D L E F A+ +++ Sbjct: 782 LVGSQGGANILNRSK--------LPEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVAD 833 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++ K L +IE +++ +L+ E G+E E + + + L+ ++ Sbjct: 834 SIGD--VKPIKDDLYTPKIEGSDDEVTNLTYEMAHHIYGEELPEIVKARIEKELKSIL 889 >gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] Length = 1395 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 133/476 (27%), Gaps = 47/476 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + + + V++ + IES E F + + +TGI Sbjct: 425 TYVVFDVETTGLSAVYNSIIELSAVKM-HKGNIIESFEQF---IDPGHPLSQTTINLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E +F I+ +N FD + ++ Sbjct: 481 TDEMVQGS-KSEEEVLTLFKEF---AGDSILVAHNASFDMGFLNTSNAKHNIPDAEN--- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R ++ S +L LA G+ H A D Sbjct: 534 ---PVIDTLELSRFLH-------------PQFKSHRLNTLAKKYGVNLEQHHRAIFDAET 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ + + + + + + P + Sbjct: 578 TGHLCWVFLKEAREEHDIHFQDQLNEHTGEGDAYKRARPFHATIIATTQTGLKNLFKLIS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y S +++ + L + ++ + + Sbjct: 638 SSMVDYFYRTARLPRSELIKLREGLIIGTACSQGEVFEAMMQKGFDEAKNKAKFYDYIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + + D E ++R + + + + +Y Sbjct: 698 MPKEVYAPLIEQELVKDESDLEE---IIRNLVKIGEDLNIPVVATGNVHYLNPEDSIYRK 754 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 + +L ++ + L F + K ++ Sbjct: 755 ILINSQGGANPLNRS----ELPEVHFRTTTEMLETFSF--LGEETAQQIVVKNTNKIVDM 808 Query: 424 -------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE +++++ L + G+ + + + + L +I Sbjct: 809 VDDAITPIKTDLYTPKIEGSEDEIRQLSYDEAHRLYGNPLPDIIEKRIEKELNSII 864 >gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68] Length = 1463 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 60/450 (13%), Positives = 114/450 (25%), Gaps = 40/450 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + R F ++ +N FD + + R Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + +L + + Sbjct: 577 TGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + D L + +K + Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D E + L + L + + + Sbjct: 697 MPPALYAPMIAKEQFKDKAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415 L G + + P L + + L E F AR T Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813 Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 + + K L IE+ + + L Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843 >gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61] gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52] gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61] gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52] Length = 1444 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 64/477 (13%), Positives = 137/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G + + A V+V + E I+ F + + +TG Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPGHPLSVTTMELTG 482 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + +F + +N FD + R Sbjct: 483 ITDEMVKDAPKPD----EVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIAN-- 536 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L++ R +Y + +L L IE H A D Sbjct: 537 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 579 Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ L++E + + + + ++ + + ++ ++ L++ Sbjct: 580 ATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFKLVS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H +Y V S ++ L + + ++ Sbjct: 640 --LSHIQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFL 697 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K + D + ++R L ++ + + ++Y Sbjct: 698 EVHPPDVYKPLIEMDYVKDEEMIK---NIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +L + ++ L F + Q Sbjct: 755 RKILIHSQGGANPLNRH----ELPDVYFRTTNEMLDCFSF--LGPEKAKEIVVDNTQKIA 808 Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L RIE +++ + + E GD + + L + L+ +I Sbjct: 809 SLIGDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYGDPLPKLVEERLEKELKSII 865 >gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] Length = 1442 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 76/482 (15%), Positives = 147/482 (30%), Gaps = 59/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + F+++D ET G D+ + V++ + E I++ F + +TG Sbjct: 427 DTFIVFDIETTGFSAKNDKIIEIGAVKI-KGREVIDTFSEF---VYPKCRIPYKITELTG 482 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E + +F + C + +N FD + + + Sbjct: 483 ITDEIVQDADPIEV----VLPKFIEFIDGCAVVAHNAAFDTGFIKKNCNDLGLEFNST-- 536 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + R +Y KL +A G+ N H A D Sbjct: 537 -----IVDTVPLARFLY-------------PELKRVKLNLVAKHLGVSLENHHRAVDDAK 578 Query: 183 ATLALVWL-IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT + + I++ +L + NK L K+ + T + + A N + Sbjct: 579 ATAEIFLISIKKMIEELNMNSLNDLNKEFLEKMDIKKEKTYHIIIFAKTQAGMKNLYKLV 638 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE-VHLNKC 300 A H S M + L + L G +KE + Sbjct: 639 SEA-HIDNFHKSPRVRKSKLMEMRDGLIIGSACEAGEVYRAVLDGKSDEELKEIMGFYDY 697 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + D N + L A + + +V + Sbjct: 698 LEIQPIGNNEYLINKGNVKDEDELRSLNTKIYNLGKELNKPVVATGDVHFLDPQDEVFRK 757 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHT 411 + + E L L ++ L E Y ++ P Sbjct: 758 IIMAGQGF-----------SDSENQPPLYLKTTEEMLREFS--YLGQDGAKEVVIINPGE 804 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 +++ D L+ +IE ++++ ++ E GD E + L + L + Sbjct: 805 IADSI--DVLKPIPDETYPPKIEGADDEIREMTMEKVHSIYGDPLPEIVQKRLDKELNSI 862 Query: 468 IP 469 I Sbjct: 863 IN 864 >gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426] gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus HTA426] Length = 1444 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 64/477 (13%), Positives = 137/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G + + A V+V + E I+ F + + +TG Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPGHPLSVTTMELTG 482 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + +F + +N FD + R Sbjct: 483 ITDEMVKDAPKPD----EVLARFVDWAGDATLVAHNASFDIGFLNTGLARMGRGKIAN-- 536 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L++ R +Y + +L L IE H A D Sbjct: 537 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 579 Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ L++E + + + + ++ + + ++ ++ L++ Sbjct: 580 ATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFKLVS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H +Y V S ++ L + + ++ Sbjct: 640 --LSHIQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFL 697 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K + D + ++R L ++ + + ++Y Sbjct: 698 EVHPPDVYKPLIEMDYVKDEEMIK---NIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +L + ++ L F + Q Sbjct: 755 RKILIHSQGGANPLNRH----ELPDVYFRTTNEMLDCFSF--LGPEKAKEIVVDNTQKIA 808 Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L RIE +++ + + E GD + + L + L+ +I Sbjct: 809 SLIGDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYGDPLPKLVEERLEKELKSII 865 >gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] Length = 1448 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 67/479 (13%), Positives = 136/479 (28%), Gaps = 53/479 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G ++ + A V++ + EKI E F + + +T I Sbjct: 427 TYVVFDTETTGLSAQYNKVIELAAVKM-KDGEKIGEFEEF---IDPGHPLSQTTINLTHI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E + +F CII +N FD + + R+ + W Sbjct: 483 TDAMVRGS-KTEEEVFKLFREF---CKGCIIVGHNATFDVDFMNTGYLRHGMPEIKEPW- 537 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R +Y F L LA ++ + H A D A Sbjct: 538 -----VDTLPLARILY-------------SDMKRFTLDTLAKRLKVDLEHHHRAIYDAEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + + F+ LY + + + P + Sbjct: 580 TGYIFYKMLADAREQFDILYHDDFNKHMVQPDTYKQQHPFHAIVLAKTQDGLKNLFKLAS 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + V S + + L ++ + + Sbjct: 640 DSMVNHFYRVARVPRSVLEKYREGLLVGSGCADGEVFTAMMQKGYETAKAKAKNYDYLEI 699 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D + + + +++ L A + + + + ++ Sbjct: 700 QPKALYAPLLERELVKDEEELEDIIKNMVKLAEELDKPIVASGDVHFMNKEDAIYRKILI 759 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE---KEKQD 419 + + L + +D L E F P + + Sbjct: 760 HSQGGANPLNRLK-------NLPDAHFRTTDEMLDEFAFL-----GPELAKKVVVDDPNK 807 Query: 420 WLEHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L ++ ++ +++L + E GD E + L + L+ VI Sbjct: 808 VAAMCDEITPVKDKLYTPKMPGAEDDIRNLTMNKAHELYGDPLPEIVQARLDKELKSVI 866 >gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis] Length = 1437 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 133/476 (27%), Gaps = 46/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + I F I+ +N FD + + + Sbjct: 475 ITDDMLQDAP----DVVDVIRDFRVRIGDDILVAHNASFDMGFLNVAYKKLL-----EVE 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D N + + Q P ++ Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L R ++ Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420 +L ++ +D L F + + Q Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802 Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++ K L +IE +++ S + G+E E + + + L+ +I Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIRESSYQRARSIYGEELPEIVEARIEKELKSII 858 >gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b] gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b] Length = 1430 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 72/477 (15%), Positives = 147/477 (30%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G ++ + AGV++ + E I+ E F + + +TGI Sbjct: 409 TYVVFDVETTGLSAVYNKIIELAGVKI-KDGEIIDRFEAFA---DPKHALSATTIELTGI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T G + E + +F I+ +N FD + ++ Sbjct: 465 TDDMV--QGQPDPEVITK--RFVDWCGDSILVAHNASFDMGFLEATLRSGGHEP------ 514 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R + +L LA IE H A D A Sbjct: 515 DDYPVIDTLELART-------------LMPTLKNHRLNTLAKRFDIELTQHHRAIYDAEA 561 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + ++FE ++ D+ + P L + Sbjct: 562 TAYLLMKLLDLAKQMFEMTTHRSLNAKVGS--DVSKIRPFHATIYAKNKKPGLRHLYELI 619 Query: 244 -AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y + S ++ + L L K + Sbjct: 620 SLSHIDYLYRMARMPRSELVKRREGLLIGSACDNGEIFDAALNKSDDELEKMMSFYDFIE 679 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P + + E + ++R A N Y S ++ Sbjct: 680 IHPPALYHHLIDKEIVANELELREIIKRIIRVAEKAELPVCATGNVHYLDRSDRSYREIL 739 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEK 415 + + +L + + + E F AR P+ ++++ Sbjct: 740 IRTQGGANFINTRK-------ELPHAHFRTTKEMMEEFKFLGDDLAREIVITNPNAIADQ 792 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + ++ L +IE ++++++S + GDE E + L + L+ +I Sbjct: 793 IES--IQIIPDDLYTPKIEGADDEVRNMSYDMARSIYGDELPEIVEARLEKELKSII 847 >gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13] Length = 1437 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 66/478 (13%), Positives = 142/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + + +TG Sbjct: 420 ETYVVFDVETTGLSAMYDTIIELAAVKV-KGGEIIDRFESFA---NPHHPLSATTINLTG 475 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E + QF I+ +N FD + F R Sbjct: 476 ITDDMVQNAP----EVGDVLKQFSEWMQDDILVAHNASFDMGFLNIGFQRIGL------- 524 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G ++ ++D + P + +L L IE H A D Sbjct: 525 --GKAKNPVIDTLELGRLLFPSL----------KNHRLNTLCKKFDIELTQHHRAIYDAE 572 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K + + + + + ++ ++ +++ Sbjct: 573 ATGYLLVKMLKDAFEKGITFHDELNEHSGTTDAYKRARPSHVTLLAVNEIGLKNIFKIVS 632 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H Y V S ++ + + + ++ Sbjct: 633 --ISHMNYFFRVPRIPRSQLQKLREGIIVGTACDKGEVFEGMMQKSPDEVEGIAEFYDYI 690 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + P D K E + +++ L A N Y + + ++ Sbjct: 691 EVQPPSNYAHLLELELVRDEKALKEIITNIVKLGEKLEKPVVATGNVHYLKETDKIHREI 750 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + + + L ++ +D L F + + Q Sbjct: 751 LVRSQSGANPLNRHQ--------LPDVHFKTTDEMLA--AFSFLGEEKAKEIVVTNTQKV 800 Query: 421 ------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 ++ K L +IE +++ + + GD+ E + + + L+ +I Sbjct: 801 AGMIEEIKPIKDDLYTPKIEGADEEIREMSYSRARSIYGDDLPEIVEKRIEKELKSII 858 >gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1] gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus flavithermus WK1] Length = 1430 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 135/478 (28%), Gaps = 47/478 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + FV++D ET G D + A V+V + E I+ E F + + + Sbjct: 411 MDDTFVVFDVETTGLSAVYDTIIELAAVKV-KNGEIIDRFESFA---NPHHPLSATTIEL 466 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + + +F+ + C++ +N FD + F + Sbjct: 467 TKITDDMLKDAP----DVEEVLEKFYHWIDDCVLVAHNATFDIGFLNAGFKK------IN 516 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D L++ R +Y + +L L IE H A D Sbjct: 517 RGKVTNPVIDTLELARYLY-------------PELKNHRLNTLCKKFNIELTQHHRAIYD 563 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT L+ + ++ + D N ++ Q P + Sbjct: 564 AEATGYLLIHLLKELDEKGIQYMDQLN-EASKEQGAFQRSRPFHATLLVQNEVGLKNLFK 622 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 H Y V S + + + + ++ V Sbjct: 623 LVSFSHVNYFYRVPRIPRSVLQQHREGILVGSGCDKGELFEAMMQKGVEEAEAIASFYDF 682 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + P + + D E ++ L DR + + ++ Sbjct: 683 LEVHPPEVYAPLIEMEYVRDEAALKE---IITNIVQLGDRLGIPVVATGNVHYINQEDKI 739 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y +L ++ ++ L F + + Sbjct: 740 YRKILIHSQSGGNPLNRH----ELPNVHFRTTNEMLESFSF--LGEQKAKEIVVTNTKKI 793 Query: 421 LEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + K L +IE +++ +S E GD + + L + L+ +I Sbjct: 794 ADLIGEVKPIKDELYTPKIEGADEEIRRMSYERAKSIYGDPLPDIVEKRLEKELKSII 851 >gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] Length = 1444 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 66/476 (13%), Positives = 138/476 (28%), Gaps = 51/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + I+ E F + + +TGI Sbjct: 426 TYVVFDVETTGLSAIYDSIIELAAVKM-KNGVVIDKFEEF---IDPGHPLSATTIQLTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + H+F CI+ +N FD + + + Sbjct: 482 TDDMVRGS-KSVEQVLKEFHEF---SKDCILVAHNASFDMGFLNTGYENVGIE------R 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R ++ S +L LA + H A D Sbjct: 532 TEQPVIDTLELSRMLH-------------PQLKSHRLNTLAKRYNVALEQHHRAVYDSET 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L + ++ + LY + +N P + Sbjct: 579 TGYLCHIFLKEAANDHQLLYHDELNTNIHPEEVFKNGRPFHATIFAKDQAGLKELFKVVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y V S ++ ++ + Sbjct: 639 QSNIQYYYRVPRILRSMLSSRRDSFLLGSGCSEGEVFEAMMQKGYNEAKEKAKFYDYIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + + E + L R L A N Y + + ++ Sbjct: 699 MPKAIYRPLIKKELIRNEHHLEEIIQNLVRLGDELGKPVVATGNVHYLNPEDKIYREILL 758 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS------EKE 416 + P++ +L +D L E F + + E Sbjct: 759 TSVNNGV-----------PQEYPDAHLRTTDEMLKEFAF--LGEEKAYEVVVTNSNWVSE 805 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + K L +IE ++++ L + E+ G+ + + + + + L+ +I Sbjct: 806 QLEEITPVKDDLYTPKIEGAEDEITKLSYDKAHEWYGNPLPKIVDDRIKKELKSII 861 >gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra] gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B1 str. Okra] Length = 1432 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 62/482 (12%), Positives = 133/482 (27%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT E +I +F ++ +N FD + + Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGDSVVVAHNAAFDASFINKNCKDLKIEF---- 522 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NS D + + R +KL +A GI N H A D Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ E + NK L + + T + + N + Sbjct: 567 KATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y S + L + + LKG +K + Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + +++ ++N ++ ++ K + + ++ Sbjct: 681 ------NFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKPVVATCDVH 734 Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 + + + + L ++ L E F Y + Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIHNT 790 Query: 418 QDWLEHRK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 + + +IE + ++ ++ E GD E + L + L + Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSI 850 Query: 468 IP 469 I Sbjct: 851 IN 852 >gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] Length = 1432 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 62/481 (12%), Positives = 136/481 (28%), Gaps = 58/481 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPKRIIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + + +F ++ +N FD + + Sbjct: 472 ITDDMVQDKETID----KILPRFIDFIGDSVVVAHNADFDVSFINKNCKDLKIEF----- 522 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NS D + + R +KL +A GI N H A D Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDAK 567 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ E + NK L + + T + + N + Sbjct: 568 ATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILVKNAVGLKNLYKLVS 627 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y S + L + + LKG +K + Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + +++ ++N ++ ++ K + + ++ Sbjct: 681 -----DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735 Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414 + + + + L ++ L E F Y + + Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791 Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K E + +IE + ++ ++ E GD E + L + L +I Sbjct: 792 KIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSII 851 Query: 469 P 469 Sbjct: 852 N 852 >gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] Length = 1432 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 62/481 (12%), Positives = 136/481 (28%), Gaps = 58/481 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPKRIIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + + +F ++ +N FD + + Sbjct: 472 ITDDMVQDKETID----KILPRFIDFIGDSVVVAHNADFDVSFINKNCKDLKIEF----- 522 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NS D + + R +KL +A GI N H A D Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDAK 567 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ E + NK L + + T + + N + Sbjct: 568 ATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILVKNAVGLKNLYKLVS 627 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y S + L + + LKG +K + Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + +++ ++N ++ ++ K + + ++ Sbjct: 681 -----DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735 Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414 + + + + L ++ L E F Y + + Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791 Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K E + +IE + ++ ++ E GD E + L + L +I Sbjct: 792 KIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSII 851 Query: 469 P 469 Sbjct: 852 N 852 >gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3] gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3] Length = 1444 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 64/477 (13%), Positives = 138/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G + + A V+V + E I+ +F + + +TG Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMLFA---NPGHPLSVTTMELTG 482 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + +F + +N FD + R Sbjct: 483 ITDEMVKDAPKPD----EVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIAN-- 536 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L++ R +Y + +L L IE H A D Sbjct: 537 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 579 Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ L++E + + + + ++ + + ++ ++ L++ Sbjct: 580 ATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFKLVS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H +Y V S ++ L + + ++ Sbjct: 640 --LSHIQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFL 697 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P D K + D + ++R L ++ + + ++Y Sbjct: 698 EVHPPDVYKPLIEMDYVKDEEMIK---NIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +L + ++ L F + Q Sbjct: 755 RKILIHSQGGANPLNRH----ELPDVYFRTTNEMLDCFSF--LGPEKAKEIVVDNTQKIA 808 Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L RIE +++ + + E GD + + L + L+ +I Sbjct: 809 SLIGDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYGDPLPKLVEERLEKELKSII 865 >gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B] Length = 1439 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 66/480 (13%), Positives = 148/480 (30%), Gaps = 56/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G DR + V+V + E I+ VF E +TG Sbjct: 424 DIFVVFDIETTGFSSQNDRIIEIGAVKV-KNGEIIDEFSVF---VNPQKDIPLEITELTG 479 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I ++ + + F + I+ +N FD + + + N + Sbjct: 480 IDNYMVKDAKTIDI-VIKEFYDFV---DGSILVAHNAAFDTSFIKKNYLDNDLEFNY--- 532 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + + +Y +KL + GI +N H A D Sbjct: 533 ----PIMDTIPLCKYLY-------------PALNKYKLNVICKYLGITLLNHHRAVDDAK 575 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN-QLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT + +E+ NK + + I M ++ +S ++ L++ Sbjct: 576 ATAMVFLKAQEELRSREIIKLSDLNKEYKQTQDIKKLPMNHIILLSKNQVGIKNLYKLVS 635 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299 + ++ + +L + R + S A L+ + + + I + Sbjct: 636 FSSLDNFHRKPRLPRSLIEEYREGIIIGSACEAGELYKNILQGQSDDELEPIINFYDYLE 695 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + + ++ + + + + L Q ++ D+ Sbjct: 696 IQPICNNFFLIEKGNVKDENELREINRRIYNLGQ-----------KYNKPVVATGDIHFL 744 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL---FFRYRAR---NFPHTLS 413 + E L ++ L E + P+ + Sbjct: 745 DERDGVFRKILLAGQGF--SDAENQPPLYFKTTEEMLREFSYLGEKACYEVVIKNPNDI- 801 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 E + ++ +IE +++++ ++ + GD E + L + L +I Sbjct: 802 -AESVETVKPIPDETYPPKIEGAEDEIREMTMKKVHSIYGDPLPEVVQKRLDKELNSIIN 860 >gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] Length = 1443 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 66/480 (13%), Positives = 148/480 (30%), Gaps = 56/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G DR + V+V + E I+ VF E +TG Sbjct: 428 DIFVVFDIETTGFSSQNDRIIEIGAVKV-KNGEIIDEFSVF---VNPQKDIPLEITELTG 483 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I ++ + + F + I+ +N FD + + + N + Sbjct: 484 IDNYMVKDAKTIDI-VIKEFYDFV---DGSILVAHNAAFDTSFIKKNYLDNDLEFNY--- 536 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + + +Y +KL + GI +N H A D Sbjct: 537 ----PIMDTIPLCKYLY-------------PALNKYKLNVICKYLGITLLNHHRAVDDAK 579 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN-QLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT + +E+ NK + + I M ++ +S ++ L++ Sbjct: 580 ATAMVFLKAQEELRSREIIKLSDLNKEYKQTQDIKKLPMNHIILLSKNQVGIKNLYKLVS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299 + ++ + +L + R + S A L+ + + + I + Sbjct: 640 FSSLDNFHRKPRLPRSLIEEYREGIIIGSACEAGELYKNILQGQSDDELEPIINFYDYLE 699 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + + ++ + + + + L Q ++ D+ Sbjct: 700 IQPICNNFFLIEKGNVKDENELREINRRIYNLGQ-----------KYNKPVVATGDIHFL 748 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL---FFRYRAR---NFPHTLS 413 + E L ++ L E + P+ + Sbjct: 749 DERDGVFRKILLAGQGF--SDAENQPPLYFKTTEEMLREFSYLGEKACYEVVIKNPNDI- 805 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 E + ++ +IE +++++ ++ + GD E + L + L +I Sbjct: 806 -AESVETVKPIPDETYPPKIEGAEDEIREMTMKKVHSIYGDPLPEVVQKRLDKELNSIIN 864 >gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 1439 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 132/479 (27%), Gaps = 60/479 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + + + AGV++ R ++I+ F +T IT Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKM-RGGQEIDRFSTF---INPHEKIPYHIQQLTNIT 478 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ +F ++ +N RFD + + Sbjct: 479 DEMVVDAP----ELEPKLREFVEFIGDAVLVAHNARFDIGFIQANCKAIGLPEV------ 528 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + +L L+ I N H A D A Sbjct: 529 MNPVLDTLELARFLH-------------PSMKNHRLNTLSARYKINLENHHRAIDDSIAL 575 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +++ + + + N L + P A Sbjct: 576 GGVLFGLIKDCNERNVTGLHQLNDYVGLDLSNS---RPFHCGIYALNAVGKKNLFKLISL 632 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 H + V S + + L + ++ L + Sbjct: 633 SHTEHFKRVACIPKSKLTELREGLLIISGCEKGEFFESVLNKTEEEAEDVAQYYDVLEIQ 692 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P+D+ + E L +R L A N Y + V + Sbjct: 693 PVDFYMHLVEKGLVGSRAEIEEALRRVVRIGKKLDKMVIATGNVHYLNPRDKVFRDITIQ 752 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR-------YRARNFPHTLSEKE 416 R + +D L E F RN + + Sbjct: 753 GITGFSPLKGMR--------KPDAHFRTTDEMLREFAFLGEEKAFEVVVRN-----TNEL 799 Query: 417 KQDWLEH--RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469 + + L IE + +++ + GDE + ++ L + ++P Sbjct: 800 ADRFEKFDMFPSKLFTPIIEGAEEEIRATCYDTAKRLYGDEVPDVIVQRLE---KELVP 855 >gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2] gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 1442 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 63/477 (13%), Positives = 138/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G + + A V+V + E I+ F + + +TG Sbjct: 425 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPHHPLSVTTMELTG 480 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + +F + +N FD + + Sbjct: 481 ITDEMVKDAP----DVEEVLRRFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVIN-- 534 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L++ R +Y + +L L IE H A D Sbjct: 535 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 577 Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ L++E + + Y + ++ + + ++ ++ L++ Sbjct: 578 ATGHLLMRLLKEAEERGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFKLVS 637 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H +Y V S ++ L + + ++ + Sbjct: 638 --LSHVQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFYDFL 695 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P K + D + ++R L ++ + + ++Y Sbjct: 696 EVHPPAVYKPLIEMDYVKDEEMIK---DIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 752 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +L + +D L F + Q Sbjct: 753 RKILIHSQGGANPLNRH----ELPDVYFRTTDEMLDCFSF--LGAEKAKEIVVDNTQKIA 806 Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L RIE ++++ + + + GD + + L + L+ +I Sbjct: 807 SLIGEVKPIKDDLYTPRIEGADDEIREMSYRRAKDIYGDPLPKIVEERLEKELKSII 863 >gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] Length = 1432 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 64/482 (13%), Positives = 134/482 (27%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT E +I +F ++ +N FD + + Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEF---- 522 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NS D + + R +KL +A GI N H A D Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ E + NK L + + T + + N + Sbjct: 567 KATADILLKAFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y S + L + + LKG +K + Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + +++ + N ++ ++ K + + ++ Sbjct: 681 ------DFYDYLEIQPLGNNEFLVRNGSVKDEKELEEINKKICELGEFYNKPVVATCDVH 734 Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413 + + + + L ++ L E F Y + + Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790 Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 K E + +IE + ++ ++ E GD E + L + L + Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSI 850 Query: 468 IP 469 I Sbjct: 851 IN 852 >gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] Length = 1434 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 63/477 (13%), Positives = 138/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G + + A V+V + E I+ F + + +TG Sbjct: 417 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPHHPLSVTTMELTG 472 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + +F + +N FD + + Sbjct: 473 ITDEMVKDAP----DVEEVLRRFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVIN-- 526 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L++ R +Y + +L L IE H A D Sbjct: 527 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 569 Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ L++E + + Y + ++ + + ++ ++ L++ Sbjct: 570 ATGHLLMRLLKEAEERGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFKLVS 629 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H +Y V S ++ L + + ++ + Sbjct: 630 --LSHVQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFYDFL 687 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P K + D + ++R L ++ + + ++Y Sbjct: 688 EVHPPAVYKPLIEMDYVKDEEMIK---DIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 744 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 +L + +D L F + Q Sbjct: 745 RKILIHSQGGANPLNRH----ELPDVYFRTTDEMLDCFSF--LGAEKAKEIVVDNTQKIA 798 Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L RIE ++++ + + + GD + + L + L+ +I Sbjct: 799 SLIGEVKPIKDDLYTPRIEGADDEIREMSYRRAKDIYGDPLPKIVEERLEKELKSII 855 >gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065] Length = 1432 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 64/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT E +I +F ++ +N FD + + Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEF---- 522 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NS D + + R +KL +A GI N H A D Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ E + NK L + + T + + N + Sbjct: 567 KATADILLKAFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y S + L + + LKG +K + Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + +++ ++N ++ ++ K + + ++ Sbjct: 681 ------DFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKPVVATCDVH 734 Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413 + + + + L ++ L E F Y + + Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790 Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 K E + +IE + ++ ++ E GD E + L + L + Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHSIYGDPLPEIVEKRLTKELNSI 850 Query: 468 IP 469 I Sbjct: 851 IN 852 >gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4] Length = 1436 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 63/476 (13%), Positives = 128/476 (26%), Gaps = 49/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + A V+V E I+ E F + + +TGI Sbjct: 420 TYIVFDVETTGLSANYDTIIELAAVKV-FDGEIIDRFERFA---NPHHPLSATTINLTGI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E S + F I+ +N FD + + R Sbjct: 476 TDDMVKDAP----EVSEVVTDFKKWAEDGILVAHNASFDMGFLNISYQRAGLK------K 525 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R +Y + +L LA +E H A D A Sbjct: 526 ASNPVIDTLELARFLY-------------PSMKNHRLNTLAKKLDVELTQHHRAIYDAEA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T ++ + ++ + +D N + + + + P + Sbjct: 573 TGYILAKLLKETYEKEIKYHDQLN-DYMGEGDSYKRARPYHCTLIAQNDTGLKNLFKLIS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + + + ++ + + Sbjct: 632 ISHLHYFHRVPRIPRSVLQKYREGILVGSGCDKGEVFEGMMQKSPEEVEDKARFYDYFEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + K ++ L ++ + +D +Y Sbjct: 692 HPKEVYSHLIELELVQSEKNLE---DIIHNIVALGEKLETPVVASGNVHYKDPKDSIYRK 748 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT-------LSEKE 416 L ++ +D L F + L Sbjct: 749 ILIGSQGGANPLNRH----NLPKVHFRTTDEMLH--AFEFLGNEKAKEIVVTNTNLIADM 802 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 + + K L +I+ +++ +S E L + + L+ +I Sbjct: 803 IDEI-KPIKDDLYTPKIDGADEEIRRMSYSMAKSIYGENLPEIVEARIEKELKSII 857 >gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] Length = 1441 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 73/482 (15%), Positives = 145/482 (30%), Gaps = 56/482 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + F+I+D ET G D + +++ + I+S + + V + Sbjct: 422 LEDEFIIFDIETTGLSSKNDEITEIGAIKI-KNNRIIDSFSTL---INPERSIPEKIVEL 477 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ +E + QF C + +N FD + R+ R Sbjct: 478 TGISDDMVKDQPTIEV----VLPQFLDFIGDCPVVAHNSDFDTGFIRDKAERYELSFDNI 533 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D ++ A PD + +L +A I N H A D Sbjct: 534 ----------AIDTLKLARALLPDLKK----------HRLNVIAKELNISLENHHRAVDD 573 Query: 181 VYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + + K L D +K + ++ ++ + + L Sbjct: 574 AKATAEIFIKFVEMMNKKDIRTLKDINDKLSKKLDYKTLKSYHIIILAKNYIGLENLYRL 633 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ + YK I +L R L + A LF S K + K Sbjct: 634 VSESHINYFYKKPRIPRSLLNKFREGLILGTACEAGELFQSILSSKPQSHIE-KIAKYYD 692 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + PI + + + + E N ++ L A + + + + Sbjct: 693 YLEIQPIGNNRFLIEKNLAKNEEDLKELNRKIVDLGERLNIPVVATCDVHFLENKDSIFR 752 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 ++ + E + L +D L E Y + + Sbjct: 753 KILMTGQGF-----------SDAEDQAPLYFRTTDEMLEEFI--YLGKEKAEEVVIHATN 799 Query: 419 DWLEHRKKML------TRSRIEEYKNKL-----QSLSGEYKGDEGKEGLINALYEYLQWV 467 + + ++ IE + +L + + Y D + + N L + L + Sbjct: 800 RINDAIEDIIPIPDGTFPPEIEGSEEELRRMCYEKVRRIYGEDVPEL-VKNRLDKELNSI 858 Query: 468 IP 469 I Sbjct: 859 IS 860 >gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland] gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. Langeland] gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. 230613] Length = 1432 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 64/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT E +I +F ++ +N FD + + Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEF---- 522 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NS D + + R +KL +A GI N H A D Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ E + NK L + + T + + N + Sbjct: 567 KATADILLKAFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y S + L + + LKG +K + Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + +++ ++N ++ ++ K + + ++ Sbjct: 681 ------DFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKPVVATCDVH 734 Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413 + + + + L ++ L E F Y + + Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790 Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 K E + +IE + ++ ++ E GD E + L + L + Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSI 850 Query: 468 IP 469 I Sbjct: 851 IN 852 >gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1437 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 60/475 (12%), Positives = 140/475 (29%), Gaps = 50/475 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G V ++ + AGV++ + ++I F +T I Sbjct: 422 TYVVFDIETTGLSVINNKIIEIAGVKM-KDGKEIGRYTTF---IDPHEKIPYNIQQLTNI 477 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + +F ++ +N RFD + + Sbjct: 478 TDEMVQGAP----DIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPEL----- 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R + +L LA + N H A D A Sbjct: 529 -PNPSLDTLELARL-------------LFPSLKNHRLNTLADKFKVSLENHHRAIDDTVA 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + ++ + ++ + R + + K + + ++ L++ Sbjct: 575 LMHILNHLLQEAEEQNLTQL-NRLNDHVGKDLRNTRPFHCCIYAKDMVGKKNLYRLVS-- 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + + L ++ L + + Sbjct: 632 LSHTEYFHRVACIPKSKLIELREGLIIASGCEKGEFFEAVLNKSMEEAEGIAEFYDVLEI 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P+DY + + + + ++R L A N Y V + Sbjct: 692 QPVDYNRHLVEKGLVGSKADLEDAVKRIIRIGEKLGKPVIATGNVHYLHPRDKVCRDITI 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQDW 420 + + + L + F + +A + + + Sbjct: 752 NGITG--------FSPLKDMKKPDAHFRTTSDMLEQFQFLGKEKAYEVVVKNTNELADRF 803 Query: 421 L--EHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469 E L IE +++ + + + G++ + +I+ L + ++P Sbjct: 804 EELELFPDKLFTPIIEGADEEIRTKCYNTAKQIYGEDLPQVIIDRLE---KELVP 855 >gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree] gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A3 str. Loch Maree] Length = 1432 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 62/481 (12%), Positives = 133/481 (27%), Gaps = 58/481 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + +T Sbjct: 416 DTFVVFDLETTGFSNKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPGRSIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + + +F ++ +N FD + + Sbjct: 472 ITDDMVQDKETID----KILPRFIDFIGDSVVVAHNAAFDVSFINKNCKDLKIEF----- 522 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NS D + + R +KL +A GI N H A D Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDAK 567 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ E + NK L + + T + + N + Sbjct: 568 ATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLVS 627 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y S + L + + LKG +K + Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + +++ + N ++ ++ K + + ++ Sbjct: 681 -----DFYDYLEIQPLGNNEFLVRNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735 Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414 + + + + L ++ L E F Y + + Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791 Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K E +IE + ++ ++ E GD E + L + L +I Sbjct: 792 KIADMIDEIKPIPDETFPPKIEGAEEDIRRMTTEKAHAIYGDPLPEIVEKRLTKELNSII 851 Query: 469 P 469 Sbjct: 852 N 852 >gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] Length = 1446 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 62/475 (13%), Positives = 134/475 (28%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + + + V++ + IES E F + + +TGIT Sbjct: 426 YVVFDVETTGLSAVYNSIIELSAVKM-HKGNIIESFEQF---IDPGHPLSQTTINLTGIT 481 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E E +F I+ +N FD + ++ Sbjct: 482 DEMVHGS-KSEEEVLTLFKEF---AGDHILVAHNASFDMGFLNTSNAKHNIPD------A 531 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ S +L LA GI H A D T Sbjct: 532 TNPVIDTLELSRFLH-------------PQYKSHRLNTLAKKYGINLEQHHRAIFDSETT 578 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L WL ++ + E Y + + + + P + + Sbjct: 579 GQLCWLFLKEAKEEHEMFYHDQLNEHIGEGDAYKRARPFHATIMATSQAGLKNLFKLVSS 638 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Y S ++ + L + ++ + +M Sbjct: 639 SMVNYFFRTARLPRSELNKLREGLIIGTACSQGEVFEAMMQKGYDEAKNKAKFYDYIEVM 698 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + + + E + L + + + + + +Y Sbjct: 699 PKEVYAPLIEQELVTNESDLEEIIRNLVKIGKELNIPVVATGNVHYLNP---EDSIYRKI 755 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423 + +L ++ + L F + + + + Sbjct: 756 LINSQGGANPLNRA----ELPEVHFRTTTEMLETFSF--LGKETAQQIVVENTNKIADMV 809 Query: 424 ------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE +++++ L + G+ E + + + L +I Sbjct: 810 EDGITPVKTDLYTPKIEGSEDEIRQLSYDEAHRLYGNPLPEIIEKRIEKELNSII 864 >gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] Length = 1521 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 70/486 (14%), Positives = 132/486 (27%), Gaps = 60/486 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +V++D ET G A D+ + V+V E + F + Sbjct: 474 LKGTYVVFDLETTGFSSAKDKIIEIGAVKV-ENGEITDKYSTF---VNPKIPIPFRITQL 529 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + + +E + QF ++ +N FD + + + Sbjct: 530 TSITDEMVMESPEIE----TILPQFLKFVGDAVLVAHNASFDVSFIEENCRQQGIEPDFT 585 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S +D + P + FKL +A A I + H A D Sbjct: 586 S----------VDTVGLARVLLPTLSK----------FKLNVVAKALNISQEHHHRAVDD 625 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + + + D N I+ M P HV + L Sbjct: 626 ARVTAEIYVKFIQMLEERGIETLDQMNHFGAHNAEAIRKM-PSYHVIVLAKNDIGRVNLY 684 Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298 ++ H Y S ++ + L + L + + V+ Sbjct: 685 TLISKSHLEYFGRQPRMPKSEVLKYREGLIIGSACEAGELYQAILGEKSAERIARIVNFY 744 Query: 299 KCPILMPI----DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + P+ + E+ + N ++R A + + Sbjct: 745 DYLEIQPLGNNRFMIDSDRVEKVQSEEDLREINREIIRLGERFDKPVVATCDVHFMDPED 804 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARN 407 +V ++ +Q + L L +D L E N Sbjct: 805 EVYRRIIMAGKGFK-----------DADQQAPLYLHTTDEMLEEFEYLGSAKAKEIVIDN 853 Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEY 463 P+ + + R I + L+ + + GD E + L Sbjct: 854 -PNMI-ADMVEKISPVRPDK-CPPVIPDSDKTLREICYNKAHSMYGDPLPEIVTERLERE 910 Query: 464 LQWVIP 469 L +I Sbjct: 911 LNSIIS 916 >gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1402 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 145/477 (30%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D DR + V++ + + F + +TGI Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITDRFSTF---VDPEGKIPVRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + I +F + ++ +N +FD + + + Sbjct: 445 YQDMVDKAPK----LIDAILEFERFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D + D +S+KL +A +E + H A +D Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSYKLNKVAEFLNVELRHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + E+ N + D+++ + + ++ L++ Sbjct: 541 TAGIFISLLERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I +L ++ + S + +F + E K + K Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP++ E + D + E N + L A + Y Q V Q+ Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 E L +D L E F Y ++ + + + Sbjct: 720 KHNQGYN-----------DVENDPQLYFRTTDEMLKE--FEYLGKDACYEVVVENTNKIA 766 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + +I+ + ++ ++ + E GD E + L + L +I Sbjct: 767 DMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHEIYGDPLPEIVKARLEKELNSII 823 >gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] Length = 1530 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 61/434 (14%), Positives = 124/434 (28%), Gaps = 47/434 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G +R + V+V E + F +T I Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKV-ENGEITDRFSTF---VNPQVPIPFRIEQLTSIND 566 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + + +F ++ +N FD + R Sbjct: 567 NMVMDAPTIE----QVLPEFLDFVGDAVLAAHNASFDVSFIEENMRRLGL---------- 612 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D + P + FKL +A A ++ + H A D T Sbjct: 613 WRDFTYVDTVALARVLLPQLNR----------FKLDTVAKALHVQLQHHHRAVDDAECTA 662 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 + E +D N+ L I+ + P HV + L V++ Sbjct: 663 GIYLKFMEMLKLQGADTFDQVNELGSASLDQIKKL-PTYHVIILAKNDVGRVNLYRLVSF 721 Query: 246 -HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303 H +Y + S + + L + L+G I + V + Sbjct: 722 SHLQYYNRRPRIPKSALNQYREGLIVGSACEAGELFRAVLEGKSEPEIARIVDFYDYLEI 781 Query: 304 MPIDYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 PI E I+ + L N ++R A + + + ++ ++ Sbjct: 782 QPIGNNAFLLKEDNDINSEEDLRELNRKIVRLGEQFNKPVVATCDVHFLNPEDEIYRRII 841 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 ++ + L L ++ L E Y + Sbjct: 842 MAGKGFK-----------DADEQAPLFLRTTEEMLKEFA--YLGSEKAEEVVITNTNKIA 888 Query: 422 EHRKKMLTRSRIEE 435 + + ++ R ++ Sbjct: 889 DMC-EKISPVRPDK 901 >gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] Length = 1463 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 59/449 (13%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + + + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIVAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNVDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVLSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R P+ L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AETFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA04375] Length = 1463 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 59/449 (13%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F Y +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGYPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R P+ L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + E K L I++ + + L Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397] gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall] gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC 3502] gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. ATCC 19397] gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. Hall] Length = 1432 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 64/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT E +I +F ++ +N FD + + Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIDFIGDSVVVAHNASFDVSFINKNCKDLKIEF---- 522 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 NS D + + R +KL +A GI N H A D Sbjct: 523 ---ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ E + NK L + + T + + N + Sbjct: 567 KATADILLKSFEMLREKEIITLHSLNKEFLGNINIKKEPTHHLIILAKNAVGLKNLYKLV 626 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y S + L + + LKG +K + Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + +++ ++N ++ ++ K + + ++ Sbjct: 681 ------DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVH 734 Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413 + + + + L ++ L E F Y + + Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790 Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467 K E + +IE + ++ ++ E GD E + L + L + Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHSIYGDPLPEIVEKRLTKELNSI 850 Query: 468 IP 469 I Sbjct: 851 IN 852 >gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] Length = 1441 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 62/478 (12%), Positives = 146/478 (30%), Gaps = 52/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ +F V++ + I+S F + +T Sbjct: 426 DTFVVFDLETTGFSSQYDKIIEFGAVKI-KNGNIIDSFSAF---VNPEMKIPYRITELTS 481 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + + +F ++ +N FD + R + Sbjct: 482 ITNEDVKDAETID----KVLPKFMKFAEDTVLVAHNSNFDMSFIRKNCNDLNIECNYT-- 535 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + + +KL +A G+ N H A D Sbjct: 536 -----VMDTIPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 577 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 AT ++ + ++ + N L + + T + + ++ LI+ Sbjct: 578 ATGDILVHCFKLLKEMEITSLNDLNNKFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 637 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299 YK + +L + + S A ++ + +++ + IK + + Sbjct: 638 FSNLDYFYKKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKIEDELKELIKFYNYLE 697 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +M ++ ++ + K + L N Sbjct: 698 IQPIMNNEFMLRKGIVKNEDQLKEINRKIYELGVN-NDLPVVATGDVHFLDFKDVKFREI 756 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN----FPHTLSEK 415 L G L+T E L D A+ P ++ + Sbjct: 757 LMTGQGFSDAANQPPLYLKTTSEMLKEFEYLGED----------IAKEVVIYNPQKIANE 806 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 ++++ +I+ + +++++ E G+ + + + L + L +I Sbjct: 807 V--EFVKPIPDETFPPKIDGAEEDIRNMTLEKAYTIYGNPLPKVVHDRLEKELNSIIN 862 >gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1402 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 146/477 (30%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D DR + V++ + + F + +TGI Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITDRFSTF---VDPEGKIPVRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + I +F ++ ++ +N +FD + + + Sbjct: 445 YQDMVDKAPK----LIDAILEFERFASSSVLVAHNAQFDIGFLKKAYQECGI-------- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D + D +S+KL +A +E + H A +D Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSYKLNKVAEFLNVELRHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + E+ N + D+++ + + ++ L++ Sbjct: 541 TAGIFISLLERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I +L ++ + S + +F + E K + K Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP++ E + D + E N + L A + Y Q V Q+ Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 E L +D L E F Y ++ + + + Sbjct: 720 KHNQGYN-----------DVENDPQLYFRTTDEMLKE--FEYLGKDACYEVVVENTNKIA 766 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + +I+ + ++ ++ + E GD E + L + L +I Sbjct: 767 DMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHEIYGDPLPEIVKARLEKELNSII 823 >gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88] gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88] Length = 1427 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 120/401 (29%), Gaps = 42/401 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V++D ET G D+ + V++ ++ + ++ F + + + + + Sbjct: 409 LEDSYVVFDIETTGFSNKNDKIIEIGAVKI-KEGKVVDKYSTF---VNPERIIPEKIIEL 464 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +E E + F I+ +N FD + + Sbjct: 465 TGIHDYMVKDAPKIE-EVLPKFIDFIEDS---ILVAHNANFDVSFIKKNCKDFGIHFN-- 518 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D + + + +Y +KL +A GI +N H A D Sbjct: 519 -----NPILDTIPLCKFLY-------------PELKRYKLNVVAKHLGIPLLNHHRAVED 560 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTAL 239 T ++ E + N+ + ++ T V + ++ L Sbjct: 561 AKTTGDILLKAFEDLKDKEIMNLNMLNEEYFKNQDIKKSPTYHVIILVKNKIGLKNLYKL 620 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298 I+ + YK + +L R + S A +++ + L +KEV Sbjct: 621 ISESHLNHFYKKPRMPKSLINKYREGLMIGSACEAGQVYK--EVLMDKSKEELKEVISFY 678 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + PI D + + + A N ++ DV Sbjct: 679 DYLEIQPIKNNYFMIRNGIVKDEEELRDINKKI--------YNLAEENNMPVVATCDVHF 730 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + E L L +D L E Sbjct: 731 LDKKDEVFRKILMAGQGF--SDAENQPPLYLRTTDEMLKEF 769 >gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1402 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 75/477 (15%), Positives = 146/477 (30%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D DR + V++ + E F + +TGI Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITERFSTF---VDPEGKIPVRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + S I +F + ++ +N +FD + + + Sbjct: 445 YQDMVDKAPK----LSDAILEFERFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D + D +S KL +A +E + H A +D Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNVELKHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + E+ N + D+++ + + ++ L++ Sbjct: 541 TANIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I +L +R + S + +F + E K + K Sbjct: 601 SHLEYFYKRPRIPKSLLIQLRDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP++ E + D + E N + + L A + Y Q V Q+ Sbjct: 660 IMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 E L +D L E F Y R+ + + + Sbjct: 720 KHNQGYD-----------DVENDPQLYFRTTDEMLKE--FEYLGRDACYEVVVENTNKIA 766 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + +IE + ++ ++ + E GD E + L + L +I Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823 >gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] Length = 1438 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 61/476 (12%), Positives = 138/476 (28%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + + V++ + I+ E F + + +T I Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E + F I+ +N+ FD + + R+ Sbjct: 474 TDEMVHGS-KSEEEVFKLFRDF---CEDAIVVGHNVTFDIGFMNTGYVRHGMPEI----- 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y ++L LA + + H A D Sbjct: 525 -KNPIIDTLTLARFLY-------------PNMRGYRLNTLAKKFDVNLEHHHRAIYDAET 570 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + + +Y + + + ++ P V Sbjct: 571 TGHLNYLFLKDAEDRYGIVYHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVS 630 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V + + + + ++ + K+ + Sbjct: 631 LSNVDYFFRVPRVPRTQLEKFREGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYDYLEV 690 Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D E L +++ L+ A + Y + + ++ Sbjct: 691 QPKRAYAPLIESHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 + +L L+ ++ L + F + + Sbjct: 751 NSQGGANPLNRQ--------ELPDLHFLTTNEMLDDFAF--LGAEKAKEIVVTNTNRIAD 800 Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L ++E +++++ + ++ GD + + + L L+ +I Sbjct: 801 DIDDVHPLKDRLYTPKMEGSEDEIKERTMTTAHQWYGDPLPKIVDDRLKTELKSII 856 >gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1463 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 59/449 (13%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTNLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMDELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R P+ L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII Length = 1638 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 105/404 (25%), Gaps = 35/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I+ + F Y +TGI Sbjct: 595 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 650 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I+ +N FD + + RN Sbjct: 651 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 701 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y F L L I + H A D A Sbjct: 702 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 747 Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T L + + + L + +K + + ++ ++ Sbjct: 748 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 807 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + +Y + S + L + + ++ Sbjct: 808 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 865 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + K + L L++ L A N Y + + + Sbjct: 866 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 925 Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 + + P L + +D L F Sbjct: 926 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 969 >gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2] gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2] Length = 1437 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 57/474 (12%), Positives = 143/474 (30%), Gaps = 50/474 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++++D ET G + ++ + AGV++ ++++ F +T I Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMRE-GKEVDRFSTF---INPHEKIPYHIQQLTNIN 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++ +F I+ +N RFD + + Sbjct: 477 DEMVKDAP----ELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDV------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + +L L+ + N H A D A Sbjct: 527 TNPVLDTLELARFLH-------------PTMKNHRLNTLSAKYKVSLDNHHRAVDDSVAL 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 +++ + + N L + ++ + A + N + + Sbjct: 574 GGVLFGLINDAAERNITGLHQLN--DYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSI- 630 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 H + V S + + + + + ++ L ++ + Sbjct: 631 SHTEHFKRVACIPKSKLVDMREGILVISGCEKGEFFETVLNKSYEEALEVARFYDALEIQ 690 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P+D+ + + + + + L A N Y + + + Sbjct: 691 PVDFYMHLVDKGLVGSRAEIEQAMRRICEIGDELGKPVIATGNVHYLNPRDKLYRDIAIH 750 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL--SEKEKQDWL 421 + +L ++ L E F AR + + + + + Sbjct: 751 GITG--------FSPLKDLRKPDAHLRTTEEMLREFAFLGEARAYEVVVKNTVELSNRFE 802 Query: 422 --EHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVIP 469 E L IE + ++++ + GD+ + +I+ L + ++P Sbjct: 803 PFEMFPDKLFTPIIEGAEEEIRNTCYDTAKSMYGDDLPQVVIDRLE---KELVP 853 >gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 1434 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 64/485 (13%), Positives = 133/485 (27%), Gaps = 64/485 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++++D ET G + + A V+V + E ++ E F P + +TG Sbjct: 418 ETYIVFDVETTGLSAVYNTIIELAAVKV-KNGEIVDRFESFA---NPHEKLTPLIIDLTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E + F + +N FD + F + Y Sbjct: 474 ITDDMVENAP----EVDDVLKDFHEWIGDATLVAHNASFDMGFINAGFQKIGY------- 522 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G++ ++D + +++L L IE V H A D Sbjct: 523 --GHATNPVIDTLELGRLLY----------PTFKNYRLNTLCKKFNIELVAHHRAIYDAE 570 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+W + + + + N+ D + P + Sbjct: 571 ATGHLLWKMVKDATSQG--IMKHFQLNEQTSKDDYKKQRPNHCIIFGKTKEGLKNLYKLV 628 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S L ++ K Sbjct: 629 SLSHINYFYRVPRIPKSVLSEHRDGLMIGSACDNGEVFDAMMQKSPEEVEKVAEFYDYLE 688 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + D ++++ +L D+ + + + +Y Sbjct: 689 VQPPSNYNHLVEKEIIRDELALK---DIIKKIIDLGDKLGKKVVATGNAHYLNEEDAIYR 745 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420 + P ++ +D L F L E++ ++ Sbjct: 746 KILIASQGGANPLNRTSLP----KVHFRSTDEMLSCFSF----------LPEEKAKEIVI 791 Query: 421 ------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464 ++ L +IE ++++ L + G+ + + + L + L Sbjct: 792 TNTVAVANEIDDIKPIPDDLYTPKIEGADDEMRELSYGRARSIYGETLPKIVEDRLEKEL 851 Query: 465 QWVIP 469 +I Sbjct: 852 NSIIS 856 >gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363] gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000] Length = 1635 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 104/404 (25%), Gaps = 35/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I+ + F Y +TGI Sbjct: 592 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 647 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I+ +N FD + + RN Sbjct: 648 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNASFDVGFMNMNYSRNGLPII----- 698 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y F L L I + H A D A Sbjct: 699 -SQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 744 Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T L + + + L + K + + ++ ++ Sbjct: 745 TGRLLFVFLEELRTRNTGWTSLLELNAKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 804 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + +Y + S + L + + ++ Sbjct: 805 SF--GNVKYYAGLPRLPRSVLEANSEGLLVGSACEVGEVFDAAINKTFEETLEIAKFYDF 862 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + K + L L++ L A N Y + + + Sbjct: 863 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 922 Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 + + P L + +D L F Sbjct: 923 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 966 >gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1] gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1] Length = 1390 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 78/472 (16%), Positives = 153/472 (32%), Gaps = 50/472 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D ET G + D + V+ R + I+ F +P + +++ ITGI Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKT-RDGKVIDEFHTF-VRPNK---LNKKSLNITGI 436 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + I+ +N FD + +NI ++ + Sbjct: 437 TEDMLKDAP----DIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNP---- 488 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D +R A + I+ SF L L G+ H A D Sbjct: 489 ------PYIDTLRLSQALLRNKIK---------SFSLDKLVDHFGLGAFQHHRALDDARV 533 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T+ + W + E K ++ NK + + + V V N + Sbjct: 534 TVNVFWKLIELAKKKSITTFEKLNKL-VENINPLVKHPQHVTVLVRNKTGLKNLYKLISK 592 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A H V S + + L L+ + + + Sbjct: 593 A-HTETFFVVPQVLKSELEKHREGLLIGTGCANSEIFELALQRDTGALTEALKFYDYIEI 651 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP+D E F R + E LL + L + N + ++ Sbjct: 652 MPLDTINSEEFTR-----EEAKEAYKLLYQVGKELNMPVVMVSNAHFIDPEDIKARKVLL 706 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420 ++++ + + LRT E + F D ++ N +K Sbjct: 707 APQSNIEDEEANYYLRTTQEMIDAALEIFEDE---QIAKEVVVDN-----PKKIANMIDT 758 Query: 421 LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 ++ +K L +IE + KL+++ + + G+ E + + + L +I Sbjct: 759 IQPLEKKLHPPKIEGAEEKLRTMTYEKAYQLYGNPLPEIVEKRIEKELNSII 810 >gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11] gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis subsp. cremoris SK11] Length = 1635 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 104/404 (25%), Gaps = 35/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I+ + F Y +TGI Sbjct: 592 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 647 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I+ +N FD + + RN Sbjct: 648 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNASFDVGFMNMNYSRNGLPII----- 698 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y F L L I + H A D A Sbjct: 699 -SQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 744 Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T L + + + L + K + + ++ ++ Sbjct: 745 TGRLLFVFLEELRTRNTGWTSLLELNAKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 804 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + +Y + S + L + + ++ Sbjct: 805 SF--ENVKYYAGLPRLPRSVLEANREGLLVGSACEVGEVFDAAINKTFEETLEIAKFYDF 862 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + K + L L++ L A N Y + + + Sbjct: 863 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLVKPVLATGNLHYLNPEDAIYRE 922 Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 + + P L + +D L F Sbjct: 923 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 966 >gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403] gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis Il1403] Length = 1658 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 105/404 (25%), Gaps = 35/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I+ + F Y +TGI Sbjct: 615 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 670 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I+ +N FD + + RN Sbjct: 671 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 721 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y F L L I + H A D A Sbjct: 722 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 767 Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T L + + + L + +K + + ++ ++ Sbjct: 768 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 827 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + +Y + S + L + + ++ Sbjct: 828 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 885 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + K + L L++ L A N Y + + + Sbjct: 886 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 945 Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 + + P L + +D L F Sbjct: 946 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 989 >gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis KF147] gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis KF147] Length = 1638 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 105/404 (25%), Gaps = 35/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I+ + F Y +TGI Sbjct: 595 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 650 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I+ +N FD + + RN Sbjct: 651 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 701 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y F L L I + H A D A Sbjct: 702 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 747 Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T L + + + L + +K + + ++ ++ Sbjct: 748 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 807 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + +Y + S + L + + ++ Sbjct: 808 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 865 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + K + L L++ L A N Y + + + Sbjct: 866 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLDKPVLATGNLHYLNPEDAIYRE 925 Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 + + P L + +D L F Sbjct: 926 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 969 >gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1410 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 69/475 (14%), Positives = 146/475 (30%), Gaps = 48/475 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D + V++ + ++ +++ E F +TGI Sbjct: 398 SFVVFDIETTGLSSINDNIIEIGAVKI-KNFQIVDTFETF---VNPQVHISKFITKLTGI 453 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E + F I+ +N FD + + + Sbjct: 454 TDDMVKEYPSIE-EILPKFLDFIKDS---ILVAHNANFDVTFIKTKARNLGME------- 502 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R + ++KL +A G+ N H A D A Sbjct: 503 VDNPVLDTLELSR-------------HMYENLKNYKLDTVAQHLGVSLENHHRAVDDAKA 549 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + I + K E + + + + + I ++ + R+ L++ Sbjct: 550 TAEIFIKSINKLKENGIEKVNEINDYLKNKVDIKKMPTYHVIILVKNQKGLRNLYELVSK 609 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN--KC 300 +++ I +L MR + S +F + + + + Sbjct: 610 SNLEYFHRNPRIPKSLLSQMREGLLIGSACEQGEVFRGLISNLDDDKLQEIVSYYDYLEV 669 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L ++ + + + + + + L +Q + + + Sbjct: 670 QPLGNNEFLIDKGEVKNKEELIKINKRIYDLGKQFKKPVVATCDVHFLDPWDNVYRKILM 729 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 Y F D DRQ T +++ F E+ N + Sbjct: 730 YGKGFKDADRQPPLYFRTT--DEMMREFDYFD----REIAKEIVIDN-----PNEIADSI 778 Query: 421 LEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + IE + +L+ L + E G++ + + L + L +I Sbjct: 779 EDVKPIPDGTFPPSIEGAEEELRKLTLNKAHEIYGEKLPDIVEKRLDKELNSIIN 833 >gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125] gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125] Length = 1433 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 69/475 (14%), Positives = 141/475 (29%), Gaps = 50/475 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G ++ + A V+V + E I+ E F + +TGIT Sbjct: 419 FVVFDVETTGLSAVYNKIIELAAVKV-KNGEIIDRFERFA---DPHEPLTNTIIELTGIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 VE + H F ++ +N FD + F + Sbjct: 475 DDMLKGQPEVE-QVLNEFHAFI---GDAVLVAHNASFDMGFLNTGFQKMGL--------- 521 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G ++ ++D + P + +L L IE V+ H A D AT Sbjct: 522 GEAKNPVIDTLELGRFLYPTL----------KNHRLNTLCKKFDIELVSHHRAIYDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+W + + + +D N N Q + + ++ ++ L++ Sbjct: 572 GHLLWRMVKDATERDILYHDQLNDNMGEGNFHRQRPSHCILLAQTQEGLKNLYKLVSMAH 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Y+ I + R + S +F ++ + + Sbjct: 632 VEYFYRTPRIPRSQLQKHREGILVGSGCDKGEVF--EGMMQKTPQEVEEIAKFYDYIEVQ 689 Query: 305 PIDYCKKEHFERWGIDHKRCLEN-LTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P+ + + + E +++ L A N Y + ++ Sbjct: 690 PLANYEHLIEKELVKSREALQEIVANIVKLGEQLGKPVVATGNAHYLKEEDYIYRKILIA 749 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQD 419 + L ++ + L F + + Sbjct: 750 SQGGANPLNKQT--------LPQVHFRTTSEMLEAFAF--LGEEKAKEIVVTNTNHIADQ 799 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 E L +IE +++ + + + GD E + L + L+ +I Sbjct: 800 IEEIHPIPDKLYTPKIEGADEEIRQMSYNRARKIYGDPLPEIVEARLEKELKSII 854 >gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1438 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 61/476 (12%), Positives = 138/476 (28%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + + V++ + I+ E F + + +T I Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E + F I+ +N+ FD + + R+ Sbjct: 474 TDEMVHGS-KSEEEVFKLFRDF---CEDAIVVGHNVTFDIGFMNTGYVRHGMPEI----- 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y ++L LA + + H A D Sbjct: 525 -KNPIIDTLTLARFLY-------------PNMRGYRLNTLAKKFDVNLEHHHRAIYDAET 570 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + + +Y + + + ++ P V Sbjct: 571 TGHLNYLFLKDAEDRYGIVYHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVS 630 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V + + + + ++ + K+ + Sbjct: 631 LSNVDYFFRVPRVPRTQLEKFREGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYDYLEV 690 Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D E L +++ L+ A + Y + + ++ Sbjct: 691 QPKRAYAPLIESHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 + +L L+ ++ L + F + + Sbjct: 751 NSQGGANPLNRQ--------ELPDLHFLTTNEMLDDFAF--LGAEKAKEIVVTNTNRIAD 800 Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L ++E +++++ + ++ GD + + + L L+ +I Sbjct: 801 DIDDVHPLKDRLYTPKMEGSEDEIKERTMTTAHQWYGDPLPKIVDDRLTTELKSII 856 >gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis 108] gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1402 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 72/477 (15%), Positives = 142/477 (29%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D DR + V++ + E F + +TGI Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITEKFSTF---VDPEGKIPVRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + S I +F + ++ +N +FD + + + Sbjct: 445 YQDMVDKAPK----LSDAILEFEKFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D + D +S KL +A +E + H A +D Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNVELKHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + E+ N + D+++ + + ++ L++ Sbjct: 541 TAGIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I +L ++ + S + +F + E K + K Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP++ E + D + E N + L A + Y Q V Q+ Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 E L +D L E Y + + + Sbjct: 720 KHNQGYD-----------DVENDPQLYFRTTDEMLKEFD--YLGNESCYEVVVENTNKIA 766 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + +IE + ++ ++ + E GD E + L + L +I Sbjct: 767 DMIEDIKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823 >gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] Length = 1437 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 137/475 (28%), Gaps = 44/475 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G D + A V++ R E I+ E F + + +TG Sbjct: 419 DTYIVFDVETTGLSAVYDTIIELAAVKI-RGGEIIDKFERFA---NPHHPLSATTIELTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + F + I+ +N FD + + R Sbjct: 475 ITDDMVRDAP----DVIDVVRDFREWIDDDILVAHNASFDMGFLNVAYKRLLKVE----- 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L L IE H A D Sbjct: 526 KAQNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDAE 572 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + Y + + + Q P + Sbjct: 573 ATGYLLLKMLK-DAAEKDIQYHDQLNENMGQSNAYQRSRPYHATLLAVNDTGLKNLFKLV 631 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + L R ++ Sbjct: 632 SMSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + + D K E ++ T L ++ + + ++Y Sbjct: 692 VQPPEVYRHLLQLELVRDEKALKE---IITNITKLGEKLDKPVVATGNVHYLNDEDKIYR 748 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ---- 418 +L ++ +D L F A + ++ Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLEAFSF-LGAEKAKEIVVANTQKVASM 803 Query: 419 -DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + ++ K L +IE +++ +S + G+E E + + + L+ +I Sbjct: 804 IEEIKPIKDDLYTPKIEGADQEIRDMSYQRARSIYGEELPEIVEARIEKELKSII 858 >gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] Length = 1438 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 61/476 (12%), Positives = 139/476 (29%), Gaps = 48/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + + V++ + I+ E F + + +T I Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E + F I+ +N+ FD + + R+ Sbjct: 474 TDEMVHGS-KSEEEVFKLFRDF---CEDAIVVGHNVTFDIGFMNTGYVRHGMPEI----- 524 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L + R +Y ++L LA + + H A D Sbjct: 525 -KNPIIDTLTLARFLY-------------PNMRGYRLNTLAKKFDVNLEHHHRAIYDAET 570 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L +L + + +Y + + + ++ P V Sbjct: 571 TGHLNYLFLKDAEDRYGIVYHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVS 630 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y V + + + + ++ + K+ + + Sbjct: 631 LSNVDYFFRVPRVPRTQLEKFREGIIVGSACSSGEVFTAMMQKGMDEARKKAGVYDYLEV 690 Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P D E L +++ L+ A + Y + + ++ Sbjct: 691 QPKRAYAPLIESHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 + +L L+ ++ L + F + + Sbjct: 751 NSQGGANPLNRQ--------ELPDLHFLTTNEMLDDFAF--LGAEKAKEIVVTNTNRITD 800 Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L ++E +++++ + ++ GD + + + L L+ +I Sbjct: 801 DIDDVHPLKDRLYTPKMEGSEDEIKERTMTTAHQWYGDPLPKIVDDRLTTELKSII 856 >gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] Length = 1435 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 143/477 (29%), Gaps = 50/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D + A V++ + + I+ E F + + +TG Sbjct: 419 ETFVVFDLETTGLSAVYDTIIELAAVKI-KGGQIIDKFESFA---NPHHELSSTTIDLTG 474 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E I ++ I+ +N FD + + + D+ + Sbjct: 475 ITDDMVKNAP----EVEEVIRKYHEWAGDHIMVAHNASFDMGFLYVCYKKYGIDTVHAT- 529 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L++ R ++ + +L LA GIE H A D Sbjct: 530 ------IDTLELARMLH-------------PELKNHRLNTLAKKFGIELTQHHRAIYDTE 570 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + ++ + LY + + + + P Sbjct: 571 ATSYLLTHLLKEADQK-GILYHDQLNDYVGSGDAYKRSRPTHCTLLAQNDEGLKNLFKLV 629 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 A H Y V S + + L + ++ + K Sbjct: 630 SASHINYFYRVPRIPRSLLQKHRKGLLVGSGCDKGEVFEAVMQKSMEEVEKTAQFYDYLE 689 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD-RFKAIYNKPYTSSSQDVDSQLY 361 + P + D + + L + + + A N Y + + Q+ Sbjct: 690 VHPKEVYSHLIEREMIRDEWNLEDIIRKLVKISRKLEIPLVATGNVHYLDETDAIFRQVL 749 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH------TLSEK 415 G + + L ++ ++ L F H +L Sbjct: 750 IGSQGGANPLNRTK--------LPKVHFRTTNEMLDAFDF--LGSETAHELVVTNSLKIS 799 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + D ++ K L +IE +++ L + + G E + + + L+ +I Sbjct: 800 DMIDVVKPIKDELYTPKIEGADEEVRELSYNMAQQIYGSPLPEIVEARIEKELKSII 856 >gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1402 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 143/476 (30%), Gaps = 52/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D DR + V++ E ++ F + +TGI Sbjct: 389 TFVVVDIETTGFDNQKDRIIEIGAVKI-ENGEIVDRFSTF---VDPEGKIPIRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 S I +F + I+ +N +FD + + + Sbjct: 445 YQNMVDNAPK----LSDAILEFEKFCSGAILVAHNAQFDIGFLKRSYQECGL-------I 493 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R + +S KL +A IE + H A +D Sbjct: 494 FDYTYIDTLELSRRV-------------LTDLSSHKLNKVAEFLNIELKHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + EK N + D+++ + + ++ L++ Sbjct: 541 TAKIFISLIEKLKSRGYKYLKELNTIETNTKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I ++ ++ L S + +F K V L Sbjct: 601 SHLEYFYKRPRIPKSVLIQLKDGLILGSACESGEVF-RAIMEGKSDDELEKIVSLYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +MP++ E + D ++ + + Q ++ + + ++ Sbjct: 660 IMPVENNSFLIREGYLKDEEQLRQINKKIYQLGKKLNKLVVATSDAHY---CHPHQRILR 716 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 E L +D L E F Y + + + + + Sbjct: 717 QILKHNQGYD-------DVENDPYLYFRTTDEMLKE--FEYLGKEAAYEVVVENTNKIAD 767 Query: 423 HRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + +IE + ++ ++ + E G+ E + L + L +I Sbjct: 768 MIEDVKPIPDETFPPKIEGAEEEIYNMTMKRAHEIYGEPLPEIVKQRLEKELNSII 823 >gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] Length = 1463 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------R 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R P+ L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + E K L I++ + + L Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus lactis subsp. lactis CV56] Length = 1638 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 104/404 (25%), Gaps = 35/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I+ + F Y +TGI Sbjct: 595 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 650 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I+ +N FD + + RN Sbjct: 651 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 701 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y F L L I H A D A Sbjct: 702 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEYHHMANFDAEA 747 Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T L + + + L + +K + + ++ ++ Sbjct: 748 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 807 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + +Y + S + L + + ++ Sbjct: 808 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 865 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + K + L L++ L A N Y + + + Sbjct: 866 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 925 Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 + + P L + +D L F Sbjct: 926 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 969 >gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] Length = 1463 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVIDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQIKDTEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R P+ L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + E K L I++ + + L Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1450 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 57/479 (11%), Positives = 119/479 (24%), Gaps = 53/479 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V++ + E I++ F + +T Sbjct: 435 DTYVVFDIETTGFSPVNDKIIEIGAVKI-KNGEVIDNFSHF---VNPERSIPYVITELTS 490 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I +E + +F ++ +N FD + + D Sbjct: 491 INNDMVRDAETIEI----LLPKFMEFCADSVLVAHNAAFDTGFIKKNCRDLGIDFNY--- 543 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 S D + + R + KL +A GI N H A D Sbjct: 544 ----SIMDTVPLARFLC-------------PDLKKVKLNLVAKHLGISLDNHHRAVDDAK 586 Query: 183 ATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T + + K N + + T + A N + Sbjct: 587 CTAEILLKFFTMLKEDHSINTLKQLNDLFVSNFDIKKQPTYHAIILAKTQAGLKNLYKMI 646 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK-EVHLNKC 300 A H S + + L + L G +K + Sbjct: 647 STA-HIDNFQRRPRTPKSLIAEMREGLIIGSACEAGEVYKAVLDGKSDEELKAIMEFYDY 705 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + D + ++ + Sbjct: 706 LEIQPIANNLFLIEKGMVKDENEL----KTINKKIYDIGKECDKMTVATCDVHFMDPKDE 761 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + ++ L ++ L E Y + + + Sbjct: 762 AFRRILMAGQGFK------DADKQPPLYFRTTEEMLKEFA--YLGSEIANEVVIENTNKI 813 Query: 421 LEHRK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + +IE + +++++ G+ E + L + L +I Sbjct: 814 ADSIDIIKPIPDETFPPKIEGAEEDIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 872 >gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] Length = 1401 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 74/477 (15%), Positives = 144/477 (30%), Gaps = 57/477 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + EKI E F D + ITGI Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKI-KAGEKIAEFETF---IDIDKNVPAKITEITGIN 443 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 I +F ++ +N FD + R Sbjct: 444 TSMLTGAPK----LKAAIERFIDFIGDGVLVAHNADFDYGFLRTA--------------- 484 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L++ R Y + + ++KL LA +E + H A AD AT Sbjct: 485 ----LQKLEINRKEYTVLDTLALSRALIKDSKNYKLNTLAEYFSVELDDHHRALADADAT 540 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS--RSNTALIAP 242 ++ + K N ID +++ P V ++ L++ Sbjct: 541 AEILKKLLAIIEKDDNSNLKDIN--DYISKIDWKDLRPFHAVLLAKNKKGLKNLYKLVSI 598 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I + R + S + +++ + + + K L Sbjct: 599 SHLDNFYRKPRILKSKLLQHRKGLLIGSACESGQIYQAFINNRPKNEIK-KIAKLYDYLE 657 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L P+ + E+ N + + L A + + + ++ Sbjct: 658 LQPLANNEFLIPEKVNSREDLININKKIYQLGQELNKEVVATTDAHFLDPKDSIFREILQ 717 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415 E L ++ L E N LS+ Sbjct: 718 AGQNF-----------ADAENQPPLYYRTTEEMLAEFSYFDGQTAKEIVIDNPNKILSKI 766 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 E ++ L IE +++++ + + +Y G E + +I+ L + L +I Sbjct: 767 EA---IQPIPDGLYTPEIEGAEDEIREMAYQKAHQYYGQELPQLVIDRLEKELNSII 820 >gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B] gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B str. Eklund 17B] Length = 1452 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 71/479 (14%), Positives = 139/479 (29%), Gaps = 53/479 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + E I+ C + +T Sbjct: 437 DTFVVFDLETTGFSPVNDKIIEIGAVKI-KSGEIIDEFS---CFVNPQRDIPYKITQLTS 492 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I V+E + +F +I +N FD + + Sbjct: 493 IDNNMVKDADVIEN----ILPKFMEFCEDTVIVAHNAAFDTGFIKKNCRDL--------- 539 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N +LD + P+ + KL +A GI N H A D Sbjct: 540 -NIRFDIPILDTVTLCRFLYPELKK----------VKLNIVAKFLGISLENHHRAVDDAK 588 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ EK + FE + +DI+ + + Sbjct: 589 ATADILLKSFEKIEEDFEINDLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKNLYKLI 648 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCP 301 H + + L + L+G IKE+ Sbjct: 649 SKSHIDNFFRRPRTPKTLLSEFREGLIIGSACEAGEVYKAVLEGRSDDEIKEIIEFYDYV 708 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PID + D + + N + R A + + + + + ++ Sbjct: 709 EIQPIDNNNFLIAKGSVKDEEELRDINRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKI 768 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414 + + L L ++ L E + + AR P +S+ Sbjct: 769 IMAGQGF-----------SDADNQPPLYLKTTEEMLKEFSYLGKDIAREVVIDNPKKISD 817 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 L+ +IE + ++++ + G+ E + L + L +I Sbjct: 818 SIG--VLKPIPDETYPPKIEGAEEDIKNMTLNKAHAIYGEVLPEVVQKRLDKELNSIIN 874 >gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] Length = 1432 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 67/479 (13%), Positives = 149/479 (31%), Gaps = 50/479 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT +V++D ET G + + A V++ + E I+ E F + + Sbjct: 414 MTEEYVVFDVETTGLSAVYNTIIELAAVKI-KNGEIIDRFESFA---DPHEPLTNTIIEL 469 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT V E + H+F T + +N FD + + + Sbjct: 470 TGITDDMVKGQPEV-GEVLKDFHEFV---GTATLVAHNASFDMGFLNVGYQKIGL----- 520 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G++ ++D + P+ + +L L IE V+ H A D Sbjct: 521 ----GDATNPVIDTLELGRFLYPEL----------KNHRLNTLCKKFDIELVSHHRAIYD 566 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT L+W + + +D N + + Q + ++ ++ L+ Sbjct: 567 AEATGYLLWKMVRDANERNVTHHDQLNNHMGQGNFTRQRPSHCTILAQTQEGLKNLYQLV 626 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + H Y S + + L + ++ + Sbjct: 627 SM--SHVEYFFRTPRIPRSQLQKHRKGLLIGTACDKGEVFEGMMQKSPEEVEEIAKFYDY 684 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P++ + + + + E ++ + + L A N Y + + + Sbjct: 685 LEIQPLENYQHLIEKELVKNDESLKEIVSNIVELGEKLDKPVVATGNAHYLNKEDAIYRK 744 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + L ++ +D + F + L + Q Sbjct: 745 ILIASQGGANPLNKQT--------LPPVHFKTTDEMIDAFAF--LGDDKAKKLVVENTQK 794 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + L +IE ++++ + + GD+ E + + + L+ +I Sbjct: 795 VADLVEEIHPIPDQLYTPKIEGADDEIREMSYSRARSIYGDDLPEIVEARIEKELKSII 853 >gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] Length = 1444 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 64/475 (13%), Positives = 144/475 (30%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E R QF + I+ +N+ FD + N + R+ Sbjct: 477 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A AD AT Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 574 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + + L + + + ++ + + D +Y Sbjct: 694 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDELEKPVVVTGDVHYLDQHDA---IYRKI 750 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQDWL 421 + P+ ++ + L + + L + DW+ Sbjct: 751 LIHSQGGANPLNHHSLPD----VHFRSTREMLDDFSW--LGEEKAQQLVVTNSNLIADWI 804 Query: 422 EH----RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + K L + + KL+ + + E G+ E + L + L+ +I Sbjct: 805 DDNITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 859 >gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341] gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341] Length = 1449 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 140/477 (29%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + A V+V + +I+S E + +T I Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGTEIDSFESY---INPQRPISELITRLTSI 483 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E + + + I+ +N +FD + F R ++ Sbjct: 484 TNDDVRDAPL-EKEVMTNFYNWLDKDD--ILVAHNAKFDLGFLDTCFERLGLEN------ 534 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L V RA + A L +LA + V H A D A Sbjct: 535 KNNASIDTLFVSRA-------------ENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKA 581 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + ++ +L ++ ++ +L ++ T + + L++ Sbjct: 582 TAEIFVKMLDQLYELGIEYHNEIDEKIDLELAHKRSRTFPCSILVKNAKGLKDLFRLVSY 641 Query: 243 VAWHPRYK-DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 I +L R + S +F + L + Sbjct: 642 SCTKYLNSAKPTIPRSLLEQYREDLLIGSGNGDNEVF--EELLNSKEAKVENIIDFYDYI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P + D+ E L L + +++ Y + Sbjct: 700 EIQPKHHYANFIRNERISDNAELEEILKKLIKLAEKKEKIVVATGDCYYLDEYQHVYR-Q 758 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + +D L E Y + + Sbjct: 759 ILRLTVKSNPGAHDL-------KPMATFLTTDEMLKEFS--YLDEQLREEIVIENTHKIN 809 Query: 422 EHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L IE +++++L + + G++ E + L + L +I Sbjct: 810 DMIELVIPLKDKLYTPNIEGAADEVRNLSYDMAHKIYGEQLPEIVEKRLEKELSSII 866 >gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23] gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23] gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei LC2W] gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei BD-II] Length = 1444 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 59/475 (12%), Positives = 138/475 (29%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + + QF + I+ +N+ FD + N + R+ Sbjct: 477 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A AD AT Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 574 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSNGEVFTAMMQKGEAEARAKASFYDYLEVQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P+ + + + + + ++ + D +Y Sbjct: 694 PLPVYQPLIEAGLIKGEAHLKDIIQKIINIGSELEKPVVATGDAHYLDQHDA---IYRQI 750 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423 + P+ ++ + L + + H L Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 804 Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 K L + + L+ + + E GD + + L + L+ +I Sbjct: 805 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 859 >gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 1433 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 139/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + + +N FD + F + D Sbjct: 472 ITDDMLTDAP----EVGEVFKKFQAWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KPKNPVIDTLELAR-------------FLFPDMKNHRLNTLCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L +++E K FEY + + + ++ ++ LI+ Sbjct: 569 ATGYLLAKMLKEVIEKGFEYHDQLNDSMGQGDSYKRGRPSHVTLLATSDEGLKNLYKLIS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ I +L R + + +F ++ + Sbjct: 629 YSHVNYFYRVPRIPRSLLKKHREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + + ++ Sbjct: 687 EVMPPEVLRHLVELELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAIYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P + +D L F + Q Sbjct: 747 ---LISSQGGANPLNRHSLPP-----VYFRTTDEMLDCFSF--LGEEKAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGEVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325] gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325] Length = 1449 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 142/474 (29%), Gaps = 44/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + A V+V + +I+S E + +T I Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGSEIDSFESY---INPRRPISELITRLTSI 483 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E + + + I+ +N +FD + F R + Sbjct: 484 TDDDVKDAP-FEEEVMTNFYNWLDEDD--ILVAHNAKFDLGFLDKSFERLGLKN------ 534 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L + RA + A L +LA + V H A D A Sbjct: 535 KNNASIDTLFISRA-------------ENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKA 581 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + ++ KL ++ ++ KL ++ T + + I Sbjct: 582 TAEIFVKMLDQLYKLGIEYHNEIDEKIDLKLAHKRSRTFPCSILVKNAKGLKDLFRIVSY 641 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + S + +DL + L + + Sbjct: 642 SCTDYLSSGKPTIPRSLLEQYRKDLLIGSGNSENEVFEELLNSKEDKVEGIIDFYDYIEI 701 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK-----AIYNKPYTSSSQDVDS 358 P ++ D E L L +D+ Y Y + + Sbjct: 702 QPKNHYHSFIRSERITDEAELEELLKKLIDIAKKKDKIVVATGDCYYLDEYQHVYRQILR 761 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 D + M L T E++ F D +L E N + Sbjct: 762 LTVKSNPGARDIKPMATFLTT--EEMLN-EFSFLDEKLRE---EIVIDNTHKI---SDLI 812 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + K L IE ++++ L + + GD+ E + L + L +I Sbjct: 813 ELVVPLKNKLYTPNIEGAADEVRDLSYSMAHKIYGDKLPEIVEKRLEKELASII 866 >gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] Length = 1536 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 60/393 (15%), Positives = 110/393 (27%), Gaps = 36/393 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +++V++D ET G + + VRV E + F + + +T Sbjct: 500 DNYVVFDIETTGLSNLTCKIIEIGAVRV-EHGEVVSRFSEF---INPEVPIPFKITELTS 555 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT V+E E + +F ++ +N FD + + R D Sbjct: 556 ITDAMVEDAPVIE-EILPKFREF---CGDAVLVAHNADFDTGFIKMECERQKLDW----- 606 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + + G + FKL +A A G+ + H A D Sbjct: 607 --EFTYVDTVAMAQ-------------MLLPGLSRFKLDTVAKAVGVPLEHHHRAVDDAE 651 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + E + D NK I+ M HV + L Sbjct: 652 CTAWIFVKFVEMLKERNILDLDALNKEGSVNQNAIRKMKS-HHVIILAKNEEGRVNLYRC 710 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300 V+ H +Y + S + L L+G I + V+ Sbjct: 711 VSESHLKYFNRQAKLPRSFIEEHREGLIIGSACVAGELYQALLRGAPDAEIARIVNFYDY 770 Query: 301 PILMPIDYCKKEHFERWG---IDHKRCLENLTLLRQ--QTNLRDRFKAIYNKPYTSSSQD 355 + P+ + + E + + + + + Sbjct: 771 LEIQPLGNNAFLIEDEKNPAVTCMEDLQEINRKIVKLGEQFHKPVVATCDVHFMDPEDEI 830 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388 + G + LRT E L+ Sbjct: 831 YRRIIMAGKKFADADKQEPLFLRTTEEMLAEFE 863 >gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 1438 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 60/476 (12%), Positives = 129/476 (27%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G V ++ + A V++ ++I+ F +T I Sbjct: 420 TYVVFDIETTGLSVTQNKIIEIAAVKMRE-GKEIDRYATF---VNPHERIPYHIQQLTNI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +F I+ +N RFD + Sbjct: 476 NDDMVKDAP----DVEPVLKRFVEFAEDAILVAHNARFDYDFVNAKLKELGLPIMEN--- 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + +L LA + N H A D A Sbjct: 529 ---PVLDTLELAR-------------MLFPTMKNHRLNTLAAKYKVSLENHHRAIDDTVA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 ++ + + K+ Y R +++ K + + ++ LI+ Sbjct: 573 LGEILNGLLDDAVKIEGYKTLDRLNDKVGKDLSNARPFHCGIYALNPVGKKNLFKLIS-- 630 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + + L + ++ L V + Sbjct: 631 LSHTEYFKRVPCIPKSKLVELREGLLILSGCEKGEFFETVLNKSVEEAEAVAEFYDVLEI 690 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD-RFKAIYNKPYTSSSQDVDSQLYD 362 P+ + + + + + D A N Y + + Sbjct: 691 QPLTMYMHLVEKGLVGSTEELQTAIRKIVEIGMKLDKPVVATGNVHYLDPKDKLFRDITI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + + ++ L E F + + + Sbjct: 751 HGITG--------FSPLKEVRKPDAHFRTTEEMLEEFAF--LGQEKAWEVVVTNTSALAD 800 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + E L IE +++ + G+E E ++ L + L+ +I Sbjct: 801 RFEEIELFPDKLFTPIIEGADEEIRQKCYDTAKSIYGEELPEVIVKRLEKELEPII 856 >gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] Length = 1433 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 137/478 (28%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + + +N FD + F + D Sbjct: 472 ITDDMLTDAP----EVGEVFKKFEAWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHVTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H Y V S + + L + ++ + Sbjct: 629 Y--SHLNYFYRVPRVPRSLLKKYREGLIVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + Q Sbjct: 747 ---LISSQGGANPLNRHSLPP-----VHFRTTDEMLDCFSF--LGEEKAKEIVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S E G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYEMARSIYGEELPEIVEARLEKELKSII 854 >gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1410 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 151/474 (31%), Gaps = 44/474 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D + V++ + + +++ E F +TG Sbjct: 397 DSFVVFDIETTGLSSINDSIIEIGAVKI-KDCQIVDTFETF---VNPQIHISNFITKLTG 452 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT R E + +F + +N FD + + + Sbjct: 453 ITDDMVKRYP-PIDEVLPKFLEFIK---GSTLVAHNANFDVTFIKTKAKNLGIE------ 502 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + ++KL +A G+ N H A D Sbjct: 503 -VDNPVLDTLELSR-------------HMYENLKNYKLDTVAQHLGVSLENHHRAVDDAR 548 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT + I + K E + + + + + I ++ + R+ L++ Sbjct: 549 ATAEIFLKSINKLKENGIEKVNEINSYLKNKVDIKKMPTYHVIILVKNQKGLRNLYELVS 608 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV--PIKEVHLNK 299 +++ I +L MR + S +F + I+ + Sbjct: 609 KSNLEYFHRNPRIPKSLLTQMREGLLIGSACEQGEVFRGLISNFDDDKLQEIIRYYDYLE 668 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 L ++ + + + + + L ++ + Sbjct: 669 IQPLGNNEFLIDKGEVNSKEELIKINKRIYELGKRFKKPVVATCDVHFLDPWDDVYRKIL 728 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 +Y F D DRQ T E++ + F ++ E+ + P+ + E + Sbjct: 729 MYGKGFKDADRQPPLYFRTT--EEMLSEFNYFDEKTAKEIVI-----DNPNKIV--ELIE 779 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 ++ IE + +L+ L + E G++ E + L + L +I Sbjct: 780 DVKPIPDGTFPPSIEGAEEELRKLTLNKAHEIYGEKLPEIVEKRLDKELNSIIN 833 >gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] Length = 1453 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 141/478 (29%), Gaps = 56/478 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + +R + V + + E E + F + P+ +TGIT Sbjct: 434 FVVFDTETTGLNAQTERLTEIGAVVL-KNGEITEEYDEF---VNPEKPIPPKITELTGIT 489 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E R FF+ I+ +N FD + R+ Sbjct: 490 DSMVADAP-TEKEALER---FFAFAKGRILIAHNANFDMGFLAAAAARHGLSC------- 538 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L ++R + KL + + N H A D Sbjct: 539 DFTYIDTLPIVRT-------------LFPTLRNHKLDTVVKHLKLGDFNHHRACDDAKIL 585 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTALIAP 242 + + ++ + N L D + + + ++ L++ Sbjct: 586 GLVFAEVAKRLIQEKGVADIADINNCLGGAKDYKKLRTYHQIILVKNNTGLKNLYKLVSY 645 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + YK + + R + S A L+ + + K + K Sbjct: 646 GHLNYFYKKPRVLKSDLVKHREGLLIGSACEAGELYQAVADGKSWEDL-CKIADFYDYLE 704 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + PI D +R E N T+++ +L A + + ++ + Sbjct: 705 IQPIGNNAFMIRSGLVPDEERLKEYNRTIVKLGEHLGKPVVATCDVHFQDAADANYRAII 764 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + L L +D L E Y + + Sbjct: 765 MAALKFK-----------DADNQAPLYLRTTDEMLKEFA--YLGEEKAYEVVVTNTNKIA 811 Query: 422 EHRKKML-------TRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + L +IE + LQ + + + GD E + N L L +I Sbjct: 812 DMVEGDLRPIPKGTYTPKIEGAEEDLQRITWQRAKDMYGDPVPELVKNRLDRELSSII 869 >gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] Length = 1463 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 114/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPISAFTTDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +F ++ +N FD + + R+ Sbjct: 480 TDDHVRNA-KPLKQVLEEFQEF---CQDAVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + + Sbjct: 577 TGRLLFIFIKDVAEKHGVTNLAKLNLDLISPDSYKKARVKHATIYVKNQNGLKNMFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTQYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + L + + L + + Sbjct: 697 MPPAIYAPLIAKEQVKDMDELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEEEIYREIIV 756 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + P L + ++ L E F R + Sbjct: 757 RSLGQGAIINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNA 813 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L I++ + + L Sbjct: 814 L--AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] Length = 1428 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 64/479 (13%), Positives = 134/479 (27%), Gaps = 54/479 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D + A V++ + E ++ E F + + +TG Sbjct: 412 DTFVVFDVETTGLSAVYDTIIELAAVKI-KGGEIVDRFESFA---NPHHALSQTTIDLTG 467 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E + + F + I+ +N FD + F R Y+ Sbjct: 468 ITDDMVNDAP----EVADVLKDFHTWMGNDILVAHNASFDMGFLNQGFQRIDYE------ 517 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 518 KASNPVVDTLELAR-------------FLLPELRNHRLNTLCKHLDIELTQHHRAIYDAE 564 Query: 183 ATLA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L L++ K + N ++ ++ L++ Sbjct: 565 ATGYLLWKLVQRLVEKEISNHLELNNHMGENNAYQRSRPYHCTLIAQTEEGLKNLYKLVS 624 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 H + V S + + + + ++ + Sbjct: 625 R--AHIDFFYRVPRLPRSVLQKHREGILVGTACDKGEVFETMMQKSEEEAEQVADFYDYI 682 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ--QTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P + + + + L+ L L + + Sbjct: 683 EVQPPENYTHLIEKDLVQNESQILDILRKLVNLGDKMKKTVVATGNVHYLHEHDKQYRQI 742 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 L + + +L + + F + + + Q Sbjct: 743 LIGSQAGNPLSRH----------KLPDTPFRTTTEMIN--CFHFLGEKKANEIVVDNTQK 790 Query: 420 WLEHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L IE + +++ L + E G+ + +++ L + L+ +I Sbjct: 791 LTDSIEEISPVKDGLFTPNIEGAEQEMRDLCYNKAKEVYGEPVPQIVVDRLEKELESII 849 >gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG] gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] Length = 1444 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 64/475 (13%), Positives = 144/475 (30%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E R QF + I+ +N+ FD + N + R+ Sbjct: 477 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A AD AT Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 574 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + + L + + + ++ + + D +Y Sbjct: 694 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDELEKPVVVTGDVHYLDQHDA---IYRKI 750 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQDWL 421 + P+ ++ + L + + L + DW+ Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTREMLDDFSW--LGEEKAQQLVVTNSNLIADWI 804 Query: 422 EH----RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + K L + + KL+ + + E G+ E + L + L+ +I Sbjct: 805 DDNITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 859 >gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] Length = 1463 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 59/449 (13%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TYDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R P+ L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENPNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031] gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae P1031] Length = 1463 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 58/452 (12%), Positives = 115/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F Y +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGYPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ------TNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + L + + Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKNLIEIGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + P L + ++ L E F R + Sbjct: 757 RSLGQGAMINRTIGHGE---HAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNA 813 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L I++ + + L Sbjct: 814 L--AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] Length = 1463 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAIINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPIEVVKGDLYTPFIDKAEETVAEL 843 >gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] Length = 1442 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 59/476 (12%), Positives = 133/476 (27%), Gaps = 45/476 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +VI+D ET G D+ + + ++ + E +E + F + + +T Sbjct: 423 QTYVIFDVETTGLSAIYDKVIELSASKM-KDGEVLERFDEF---IDPGFPLSEQTTNLTS 478 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E E R F CII +N+ FD + + R+ + Sbjct: 479 ITDEMVQGS-KSEEEVFRMFRDF---CEGCIIAGHNVSFDMGFMNTGYRRHNMEEI---- 530 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R +Y ++L L+ + + H A D Sbjct: 531 --TAPVIDTLPLARFLY-------------PHMRGYRLNTLSKKFKVALEHHHRANYDAE 575 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + K + + ++ P + Sbjct: 576 ATGKLLHIFLKDAEKRYGIKLISDLNKHMTDNDAYRHARPFHVTILAQTQAGLKNLYKLV 635 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + +Y V S + Q L ++ ++ Sbjct: 636 SLSNVKYFARVPRIPRSVLTKFRQGLLLGTACSSGEVFTAMMEKGFAEAERKAKYYDFIE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P + ++ D +L + + Sbjct: 696 VQPKPNYQPLLEQKVIAD----DAHLEDILKNMVKLGENLKKPVVATGDVHYLDAHDAIY 751 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419 + + + RT + ++ +D L E F A + + + Sbjct: 752 RKILINSQGGANPLNRT---RRPDVHFRTTDEMLNEFSF-LGADKAHQIVVTNTHQVADM 807 Query: 420 WLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + K L ++ + ++Q + ++ GD + + + + L ++ Sbjct: 808 IDDGICPVKDKLYTPHMKGAEQEIQDRTWDTAKKWYGDPLPKIVQDRVDLELNSIV 863 >gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM 6725] gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1402 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 73/477 (15%), Positives = 144/477 (30%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D DR + V++ + E F + +TGI Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITERFSTF---VDPEGKIPVRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + S I +F + ++ +N +FD + + + Sbjct: 445 YQDMVDKAPK----LSDAILEFEKFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D + D +S KL +A IE + H A +D Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNIELKHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + E+ N + D+++ + + ++ L++ Sbjct: 541 TAGIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I +L ++ + S + +F + E K + K Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP++ E + D + E N + L A + Y Q + Q+ Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINRKIYNLGKKLGKLVVATSDAHYCHPHQRILRQIL 719 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 E L +D L E F Y + + + + Sbjct: 720 KHNQGYD-----------DVENDPLLYFRTTDEMLKE--FEYLGSDSCYEVVVENTNKIA 766 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + +IE + ++ ++ + E GD E + L + L +I Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823 >gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang] gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus casei str. Zhang] Length = 1444 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 59/475 (12%), Positives = 139/475 (29%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + + QF + I+ +N+ FD + N + R+ Sbjct: 477 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A AD AT Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 574 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKASFYDYLEVQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P+ + + + + + + ++ + D +Y Sbjct: 694 PLPVYQPLIEAGLIKGEAHLKDIIQKVIKIGSELEKPVVATGDAHYLDQHDA---IYRQI 750 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423 + P+ ++ + L + + H L Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 804 Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 K L + + L+ + + E GD + + L + L+ +I Sbjct: 805 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 859 >gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis 2002] gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1402 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 73/477 (15%), Positives = 146/477 (30%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D D+ + V++ + IE F + +TGI Sbjct: 389 TFVVVDIETTGFDSQRDKIIEIGAVKI-ENGQIIERFSTF---VDPEGKIPVRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + I +F + I+ +N +FD + + ++ Sbjct: 445 YQDMVDKAPKLN----DAILEFEKFASGSILVAHNAQFDIGFLKKAYHECGI-------- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D + D +S KL +A +E + H A +D Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNVELKHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + EK N + D+++ + + ++ L++ Sbjct: 541 TAGIFTSLLEKLKLRGYKWLKELNSIESNTKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I +L ++ + S + +F + E K + K Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP++ E + D + E N + L A + Y Q + Q+ Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINRKIYNLGKKLGKLVVATSDAHYCHPHQRILRQIL 719 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 E L +D L E F Y + + + + Sbjct: 720 KHNQGYD-----------DVENDPLLYFRTTDEMLKE--FEYLGSDSCYEVVVENTNKIA 766 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + +IE + ++ ++ + E GD E + L + L +I Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823 >gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] Length = 616 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G DR + V++ E+I F L P ITGI Sbjct: 33 TFVVVDLETTGLSAHEDRIIEIGAVKI-HGGEEISRFSTF---VDPGRLIPPLITNITGI 88 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + ++ + F ++ +N RFD + + R Sbjct: 89 SDDDVNGAPKE----AQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAH--------- 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + + SFKL LA H A D A Sbjct: 136 --------ITWPQPTHLCTLVLARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALA 187 Query: 184 TLALVWLI 191 T+ + + Sbjct: 188 TVTVFHGL 195 >gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] Length = 1432 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 62/481 (12%), Positives = 134/481 (27%), Gaps = 58/481 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + + ++ F + +T Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPKRTIPDKITELTS 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + + +F ++ +N FD + + Sbjct: 472 ITDNMVDDKETID----KILPRFIDFIGDSVVVAHNASFDVSFINKNCKDLKIEF----- 522 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NS D + + R KL +A GI N H A D Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRHKLNVIAKHLGISLENHHRAVDDAK 567 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ E + NK L + + T + + N + Sbjct: 568 ATADILLKSFEMLREKEIITLHSLNKEFLGNINIKKEPTHHLIILAKNAVGLKNLYKLVS 627 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y S + L + + LKG +K + Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + +++ ++N ++ ++ K + + ++ Sbjct: 681 -----DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735 Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414 + + + + L ++ L E F Y + + Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791 Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K E + +IE + ++ ++ E GD E + L + L +I Sbjct: 792 KIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHSIYGDPLPEIVEKRLTKELNSII 851 Query: 469 P 469 Sbjct: 852 N 852 >gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 1447 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 47/476 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G DR Q + V++ + E ++ + F + + +T IT Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKM-QDGEVLDHFDQF---IDPGFHLSEQTTALTSIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E + F + ++ +N+ FD + + R+ Sbjct: 483 DDMVQGS-KTEEEVLKLFDDF---ADGSLLAGHNVSFDMGFMNVAYERHGMG------QI 532 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R ++L L+ + + H A D AT Sbjct: 533 KQPVIDTLPLAR-------------FLHPDFRGYRLNTLSKRFKVSLEHHHLASYDSEAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+ + + + + Y + ++ P + Sbjct: 580 GHLLAIFLKDAEERYGVTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSL 639 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + Y V S R + L ++ + + Sbjct: 640 SNVEYFARVPRIPRSVLNRYREGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQ 699 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + +L + + + Sbjct: 700 PK----PNYAPLLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRK 755 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKEK 417 + + + RT + ++ +D L + N L Sbjct: 756 ILINSQGGANPLNRT---ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDN--THLVADMV 810 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469 D + K L +E + ++Q + + E+ GD + + + + L ++ Sbjct: 811 DDGIRPVKAGLYPPHMEGAEQEIQDRTWTTAKEWYGDPLPQLVKDRVELELNSIVS 866 >gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] Length = 1447 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 47/476 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G DR Q + V++ + E ++ + F + + +T IT Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKM-QDGEVLDHFDQF---IDPGFHLSEQTTALTSIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E + F + ++ +N+ FD + + R+ Sbjct: 483 DDMVQGS-KTEEEVLKLFDDF---ADGSLLAGHNVSFDMGFMNVAYERHGMG------QI 532 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R ++L L+ + + H A D AT Sbjct: 533 KQPVIDTLPLAR-------------FLHPDFRGYRLNTLSKRFKVSLEHHHLASYDSEAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+ + + + + Y + ++ P + Sbjct: 580 GHLLAIFLKDAEERYGVTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSL 639 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + Y V S R + L ++ + + Sbjct: 640 SNVEYFARVPRIPRSVLNRYREGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQ 699 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + +L + + + Sbjct: 700 PK----PNYAPLLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRK 755 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKEK 417 + + + RT + ++ +D L + N L Sbjct: 756 ILINSQGGANPLNRT---ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDN--THLVADMV 810 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469 D + K L +E + ++Q + + E+ GD + + + + L ++ Sbjct: 811 DDGIRPVKAGLYPPHMEGAEQEIQDRTWTTAKEWYGDPLPQLVKDRVELELNSIVS 866 >gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] Length = 1463 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVEAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEK 417 P L + ++ L E F H L + Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAF--LGEELAHKLVIDNPNAL 814 Query: 418 QDWL---EHRKKMLTRSRIEEYKNKLQSL 443 + E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] Length = 1463 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKNTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEAAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNVL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans Z-2901] gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydothermus hydrogenoformans Z-2901] Length = 1407 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 138/475 (29%), Gaps = 50/475 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D+ET G D + V++ E E+ V + +TGIT Sbjct: 394 IVAFDFETSGLSSQRDEIIEIGAVKI-FDGEIKETFSVL---IRPQKPISAKISELTGIT 449 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++G+ E I +F + I+ +N FD + R R ++ Sbjct: 450 NDLLEKEGLDFGEA---IEKFLRFCDGSILLAHNAAFDYGFLRQALKRLGHE-------R 499 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D L ++R + KL+ + + N H A AD YA Sbjct: 500 KFSVVDNLALVRI-------------LFPELKNHKLKTITEHLEVSLNNHHRALADSYAL 546 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + + + Y D K + D + + + LI Sbjct: 547 AEVFLKLLPRLFERGLYSLDDLAKINYNYINDRSKTYHVSILVKNQEGLYNLYRLITLSH 606 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 ++ I + R + + A LFT+ E + + + I+ Sbjct: 607 LKYFHRHPRIPKSELMRYREGLLIGTACEAGELFTALLENQPESRILEIARFYDYFEIMP 666 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 + +R + + N ++ L A + + ++ ++ Sbjct: 667 KGNNAFLLRNQRLKSEQELEELNRKIIALGEKLNKPVVATGDVHFLEPEDEIYRRILQKG 726 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQDW 420 E + L ++ L E Y + + + K + Sbjct: 727 QGYD-----------DAELQPPIYLKTTEEMLKEFA--YLGQEKAYEVVVDNPRKIAEQI 773 Query: 421 LEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E IE ++ + + E GD E + L L +I Sbjct: 774 EEIKPIPDEFYPPIIEGADRQIYEMTYQRAHELYGDPLPEIVEKRLKRELDAIIN 828 >gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 1412 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/473 (14%), Positives = 142/473 (30%), Gaps = 46/473 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+++D ET G + D + +++ E +E+ F +TGI Sbjct: 401 TFIVFDLETTGLNPKEDEIIEIGAIKMKGN-EILETFSSF---VKPQKELSSLITSLTGI 456 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T G ++ + + +F I+ +N FD + RN + F + Sbjct: 457 TEDMLSGAGTIK----QVLPEFTKFAEGGILVAHNASFDYGFIRNSVKKYFGGDWE---- 508 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + +++Y A S+ L ++ + H + H A D Sbjct: 509 --MPCIDTLALAKSLY--------------RAKSYSLDNVVKRLKLGHFDHHRAYEDAKV 552 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T ++ ++ K + K + + +D + +S + L+ Sbjct: 553 TAEVLKKFLQQAKKRGVEKVNELEKLRKNQNLDSLKPVHISILSKNRKGLENLYKLVTAS 612 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 Y I +L D R + S ++ L ++ + + + + Sbjct: 613 HTKYFYMKPRIPKSLLTDFREGLLIGSACISGELSKAYIGGASVDELE-EIAKFYDYIEV 671 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP+D E + + ++ + + + + + D + Sbjct: 672 MPLDNIDTSEGE-TSMSKETLIKMYREFYKVGKKLNIPVVMTGDVHFVNPHDDIYRAAIN 730 Query: 364 FFADVDRQIMDR--ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 D D L T E + F D + N S Sbjct: 731 AAQDYDNFQNQPSLYLHTTEEMIGKALEIFEDEGI---AKEIVVDN-----SRLIASQIE 782 Query: 422 EH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + L IE +++ ++ E G + + L L+ +I Sbjct: 783 NVVPIEGKLHPPVIEGADEEVRKMAIENAERLYGKPLPDIVEKRLNRELEAII 835 >gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43] gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E3 str. Alaska E43] Length = 1452 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 70/479 (14%), Positives = 139/479 (29%), Gaps = 53/479 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + E I+ C + +T Sbjct: 437 DTFVVFDLETTGFSPINDKIIEIGAVKI-KSGEIIDKFS---CFVNPKRDIPYKITQLTS 492 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I V+E + +F ++ +N FD + + Sbjct: 493 IDNNMVKDADVIEN----ILPKFMEFCEGTVVVAHNAAFDTGFIKKNCRDL--------- 539 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N N +LD + P+ + KL +A GI N H A D Sbjct: 540 -NINFDLPILDTVTLCRFLYPELKK----------VKLNIVAKFLGISLENHHRAVDDAK 588 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ EK + FE + +DI+ + + Sbjct: 589 ATADILLKSFEKIEEDFEINDLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKNLYKLI 648 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCP 301 H + + L + L+G IKE+ Sbjct: 649 SKSHIDNFFRRPRTPKTLLSEFREGLIIGSACEAGEVYKAVLEGRSDDEIKEIIEFYDYV 708 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + D + E N + R A + + + + + ++ Sbjct: 709 EIQPIANNNFLIAKGSVKDEEELREINRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKI 768 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414 + + L L ++ L E + + A+ P +S+ Sbjct: 769 IMAGQGF-----------SDADNQPPLYLKTTEEMLKEFSYLGKDIAKEVVIDNPKKISD 817 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 L+ +IE + ++++ + G+ E + L + L +I Sbjct: 818 SIG--VLKPIPDETYPPKIEGAEEDIKNMTLNKAHAIYGEVLPEVVQKRLDKELNSIIN 874 >gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1] gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1] Length = 1438 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 137/475 (28%), Gaps = 43/475 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +V++D ET G + +F ++ I+ + FF KP P IT Sbjct: 402 SQTYVVFDLETTGLSPRFNEIIEFGASIIENG--IIKESHQFFIKPTKPIPPS--ITEIT 457 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT G + E R+I+ I +N +FD + F + D+ Sbjct: 458 KITDNTVAN-GYSQEEGVRKIYDILKNR---ICVAHNAKFDINVCKENFLKYGLDN---- 509 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKA 179 + D L + R D A S++L+ +A AH A Sbjct: 510 --SKIIGIDSLAIAR-------------FLIDEAKSYRLEIVAKKFNVYYARNEAHRADY 554 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 D + L+ K + + + V V Sbjct: 555 DANVLANVWILMILKLAREKNIRTANELAAVNDDKLFAKKFPREVRVIAKNQKGLKKLFK 614 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 I + Y + L + A + + + G +K + Sbjct: 615 IISKSLTDDYHGGPRLFIDKWEHDEDLLLGTSTNAGWV--WEEAMTGTDENILKALAPYD 672 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 PI + + + LL + L A+ + Y Q + + Sbjct: 673 YIEFPPISTFNYIYKDDSITLEQVQFAYKDLLEKAKKLGKLCIAVSDARYIYDYQSLIYR 732 Query: 360 LYDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL----FFRYRARNFPHTLS 413 +Y Q + R P+ D L + H L+ Sbjct: 733 IYVNAPTLGGGQHWLKKYREIATPDFKYLTTRQMKDE-FKFLNDGTLINEIVVDNTHKLA 791 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464 E+ E K L ++ NKL+ + + E G+ E +++ + + L Sbjct: 792 EQITPKI-EVIKDKLYFPTFDDSANKLKEVVYQTAKERYGNNIDEKILSRIEKEL 845 >gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956] gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum IFO 3956] Length = 1447 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 128/476 (26%), Gaps = 47/476 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G DR Q + V++ + E ++ + F + + +T IT Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKM-QDGEVLDHFDQF---IDPGFHLSEQTTALTSIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E + F + ++ +N+ FD + + R+ Sbjct: 483 DDMVQGS-KTEEEVLKLFDDF---ADGSLLAGHNVSFDMGFMNVAYERHGMG------QI 532 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R ++ ++L L+ + + H A D AT Sbjct: 533 KQPVIDTLPLARFLH-------------PDFRGYRLNTLSKRFKVSLEHHHLASYDSEAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+ + + + + Y + ++ P + Sbjct: 580 GHLLAIFLKDAEERYGVTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSL 639 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + Y V S R + L ++ + + Sbjct: 640 SNVEYFARVPRIPRSVLNRYREGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQ 699 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + +L + + + Sbjct: 700 PK----PNYAPLLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRK 755 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKEK 417 + + + RT + ++ +D L + N L Sbjct: 756 ILINSQGGANPLNRT---ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDN--THLVTDMV 810 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469 D + K L +E + ++Q + + E+ GD + + + + L ++ Sbjct: 811 DDGIRPVKAGLYPPHMEGAEQEIQDRTWTTAKEWYGDPLPQLVKDRVELELNSIVS 866 >gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] Length = 572 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + + V+V E + + F +TGI Sbjct: 19 TFVVVDLETTGGSPSECGITEIGAVKVRA-GEVLGEFQTF---VNPGQPIPAFISVLTGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T VE + F ++ +N FD + + R D Sbjct: 75 TDAMVRDAPRVE----PALVAFLEFAAGSVLVAHNAGFDVSFLKAACGRAERDW------ 124 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++D + D A + +L LA+ G H A D A Sbjct: 125 ---PSFPVVDTVHLARQL--------VTRDEAPNHRLGSLAVLFGATTTPDHRALHDARA 173 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + + L + + Sbjct: 174 TVDVLHGLIARVGSLGVHSLE 194 >gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1452 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 70/479 (14%), Positives = 139/479 (29%), Gaps = 53/479 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V++ + E I+ C + +T Sbjct: 437 DTFVVFDLETTGFSPINDKIIEIGAVKI-KSGEIIDKFS---CFVNPKRDIPYKITQLTS 492 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I V+E + +F ++ +N FD + + Sbjct: 493 IDNNMVKDADVIEN----ILPKFMEFCEGTVVVAHNAAFDTGFIKKNCRDL--------- 539 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N N +LD + P+ + KL +A GI N H A D Sbjct: 540 -NINFDLPILDTVTLCRFLYPELKK----------VKLNIVAKFLGISLENHHRAVDDAK 588 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ EK + FE + +DI+ + + Sbjct: 589 ATADILLKSFEKIEEDFEINDLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKNLYKLI 648 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCP 301 H + + L + L+G IKE+ Sbjct: 649 SKSHIDNFFRRPRTPKTLLSEFREGLIIGSACEAGEVYKAVLEGRSDDEIKEIIEFYDYV 708 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + D + E N + R A + + + + + ++ Sbjct: 709 EIQPIANNNFLIAKGSVKDEEELREINRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKI 768 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414 + + L L ++ L E + + A+ P +S+ Sbjct: 769 IMAGQGF-----------SDADNQPPLYLKTTEEMLKEFSYLGKDIAKEVVIDNPKKISD 817 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 L+ +IE + ++++ + G+ E + L + L +I Sbjct: 818 SIG--VLKPIPDETYPPKIEGAEEDIKNMTLNKAHAIYGEVLPEVVQKRLDKELNSIIN 874 >gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] Length = 1517 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 110/405 (27%), Gaps = 46/405 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G D+ + V+V E ++ F E +T Sbjct: 479 DTYIVFDIETTGFSAIRDKIIEIGAVKV-VNGEIVDRFSTF---VNPQRPIPFEITNLTS 534 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + L +E + QF ++ +N FD + + Sbjct: 535 ITDEMVLEADPIEN----VLPQFLEFVGDGVLVAHNASFDVGFIEQNCR----------Y 580 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R+ +D + P + +KL +A GI N H A D Sbjct: 581 QEIEYRFTYVDTVAMARVLLPTLSK----------YKLNLVAKTLGISLENHHRAVDDAG 630 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E K N+ R + I+ M H+ + L Sbjct: 631 ATAEIFVKFVEMLKKDHITDLKGINRFGERNVNAIRKMAT-HHIIILAKNDIGRYNLYQL 689 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHL 297 ++ H Y S + L + L+ I E Sbjct: 690 ISESHMTYYGRRPRIPKSLLNEHREGLVIGSACEAGELYKAILEERPAETIAELADFYDY 749 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 + + + + + E N ++ + A + + +V Sbjct: 750 YEIQPIGNNRFMIGSSKVKNVNSEEDLQEINRKIVELGEQFKKPVVATCDVHFLDPEDEV 809 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 ++ + L L +D L E + Sbjct: 810 YRRIIMAGKGFD-----------DADTQPPLFLRTTDEMLEEFAY 843 >gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] Length = 1202 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 71/480 (14%), Positives = 132/480 (27%), Gaps = 59/480 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G V D + V + + + F E +T Sbjct: 185 QRFVVFDIETTGFSVTGDNITEIGAVLL-EDGQIKDRFSTF---VNPKMDIPYEVQELTN 240 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +E +++F I+ +N FD + D Sbjct: 241 ITNDMVEDAPGIE----EALNKFMDFAKDSILVAHNAYFDTGFIAQKCSEVGLD------ 290 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + D L + R F L L A I H A D Sbjct: 291 -YKHEKLDTLLLARV-------------LMPHMKRFGLDRLTKALSINLSGHHRAVNDAE 336 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALI 240 AT L K + N + ID + P + + R+ LI Sbjct: 337 ATAQLFLRFIAMMKKDGVE--KLSDINSVYGKIDHTKLRPSHATIYAQNYQGLRNLYELI 394 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + Y+ ++ +L + R + S + LF + K + K + Sbjct: 395 SDSHLNHFYRQPLMLKSLIKEKRDGLIIGSACSSGELFNAIQRNKTGEEID-KILDFYDF 453 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +MP+D K + N L+ A + + + + Sbjct: 454 IEIMPLDNLKYLVESGEIKTFEELKNINKKLVDLGNQSGKLVVATGDVHTLDAHERLYRS 513 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTL 412 + ++ ++ + +D L E +R N Sbjct: 514 VLKYSQIPKYKKNIESLH-----------FRTTDEMLEEFAYLGPETAYRVVVENSNKI- 561 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + I+ K +L+ + + G+ E + L L +I Sbjct: 562 -ADMFESI-KPIPDKTYPPIIDGSKEELRRMCFDKAERIYGNPLPEIVEKRLNRELNSII 619 >gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1442 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 66/477 (13%), Positives = 131/477 (27%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + V++ + ++ F C PE +TGI Sbjct: 429 TYVVFDLETTGFSPVTDEIIEIGAVKIHGN-KILDRFSAFVC---PGREIPPEVQELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE + F ++ +N +FD + R + + Sbjct: 485 TNNMVSDAP-PIAEVLPKFIDFV---GDAVLVAHNAQFDTGFLRANMEKILNRTLA---- 536 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R + KL+ LA ++ N H A D A Sbjct: 537 --QPVLDTLGLAR-------------GLFPDMKNHKLKTLAKEFNVKLENHHRAVDDAEA 581 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ E+ + N + + Q + V + N + Sbjct: 582 TAQLLIKFLERLAEHNIDTLGQINSL-IGNINIDQLRSHHVVILVKNQQGLKNLYQLVT- 639 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCPI 302 H +Y S ++ + L + L ++E+ Sbjct: 640 DSHLKYYHRHPRIPKSELIKKREGLIIGSACEAGELFRALLDNAPQERLEEIAGFYDYLE 699 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P+ + E + E N + + A + + V + Sbjct: 700 IQPVGNNEFLLREGRVNSYDELRELNRKIFELGRKIGRPVVATGDVHFLDPEDAVYRAVL 759 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + L L ++ L E Y + + Sbjct: 760 LAGKGFE-----------DADNQAPLYLKTTEEMLEEFS--YLGLENAREVVIENPVRIA 806 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 E +IE + ++ L + + GD + + + + L +I Sbjct: 807 ESIDSIKPMPDDFFPPKIEGAEEQIIELTISTAKKIYGDPLPDIVQQRVDKELNSII 863 >gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555] gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016] gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555] gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1439 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 62/477 (12%), Positives = 134/477 (28%), Gaps = 50/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FVI+D ET G + D + +++ ++ + + F + +TG Sbjct: 424 DTFVIFDIETTGFSMTNDNIIEIGAIKI-KEGKVVGKFSEF---VNPERPIPLTITQLTG 479 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + +F + ++ +N FD + + Sbjct: 480 ITDEMVQNCESIKY-ILPKFMEFI---DNSVVVAHNANFDVGFIKKNCMELNL------- 528 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + + + FKL +A I N H A D Sbjct: 529 KFKNPVMDTIPLCK-------------FLFPELKRFKLNVVAKHLDISLENHHRAVDDAG 575 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT ++ + + NK L + + + + N + Sbjct: 576 ATCEILLRCFKMLKEKNILSLGDLNKEFLSNIDVKKQPMYHLIILVKNQIGLKNLYKMVS 635 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK-EVHLNKCP 301 + Y S ++ + L + + L G +K + Sbjct: 636 K-SNLNYFFKKPRMPKSIIIKHREGLIIGGACEAGQVYREVLGGKSDSELKDILDFYDYL 694 Query: 302 ILMPIDYCKKEHFERWGIDHKRCL---ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P++ D ++ + L N+ + Sbjct: 695 EIQPVENNLFMVRNGLVKDIEQLKDINRRICDLGVINNIPVIATGDVHFMDPKDEIFRRI 754 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + ++D D Q T + F L + +AR + K Sbjct: 755 IMAGQGYSDADNQPPLYFRTTE-----EMLFEFE-----YLGEK-KAREVVIENTNKIAD 803 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 E +IE + ++++++ + GD E + L + L +I Sbjct: 804 MIEEVKPIPDETFPPKIEGAEEEIKNMTLKKVHSIYGDNLPEIVQERLDKELNSIIN 860 >gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551] gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551] Length = 1436 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 69/475 (14%), Positives = 134/475 (28%), Gaps = 47/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ ++ E I+ E F + + +TGI Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKM-KEGEIIDRFERFA---NPHHPLSATTIELTGI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E R H++ I+ +N FD + + + Sbjct: 476 TDDMVQNAPEI-SEVLRDFHEWM---GDSILVAHNASFDMGFLNMGLQKIGLEKAANG-- 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y + +L LA IE V H A D Sbjct: 530 ----VIDTLELGRFLY-------------PHMKNHRLNTLAKKFDIELVQHHRAIYDAET 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + E R + + + Q P Sbjct: 573 TGYLLNKMLK-DAFEREITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + + R ++ + + Sbjct: 632 ISHLNYFYRVPRIPRSQLDKYREGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P D K D K ++ L ++ + + ++Y Sbjct: 692 QPPDNYKHLIELDLVRDEKALK---DIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRK 748 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEKEK 417 P+ ++ +D L F + + + + Sbjct: 749 ILIGSQGGANPLNRHQLPD----VHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKI--ADM 802 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 D ++ K L +IE +++ +S E L L + L+ +I Sbjct: 803 IDDIKPIKDDLYTPKIEGADEEMREMSYAMARSIYGEELPEVVEARLEKELKSII 857 >gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales bacterium] Length = 1428 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 144/474 (30%), Gaps = 50/474 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+++D ET G + D + +++ + E + + F + +TGIT Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKM-KGSEVLGTYSTF---VKPEKELSAMITSLTGIT 473 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E +F CI+ +N FD + RN ++F Sbjct: 474 EDMLSEA-RPIKEVLPEFTKFTE---GCILVAHNASFDYGFVRNSVKKHF---------G 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G+ +D + + S+ L ++ + H + H A D T Sbjct: 521 GDWEMPCIDTLALAKSLFRS-----------KSYSLDNVVKRLKLGHFDHHRAFEDAKVT 569 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ + K + K + + +D + ++ + L+ Sbjct: 570 AEVLKKFVQLAKKRGVQNVNELEKLRKNQNLDSLKPFHISILAKNKKGLENLYRLVTASH 629 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Y I +L DMR + S ++ L ++ + + +M Sbjct: 630 TKYFYMKPRIPKSLLADMREGLLIGSACVSGELSKAYIGGASTDELE-EIAKFYDYIEVM 688 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P+D E + + + + + + + + D + Sbjct: 689 PLDNIDTSEGE-TNMSRETLAKMYREFYKVGKRLNIPVVMTGDVHFLNPHDDIFRAAINA 747 Query: 365 FADVDRQIMDR--ILRTAPEQLSTLNLPFSDRRL-PELFF---RYRARNFPHTLSEKEKQ 418 D D L T E L + F D + E+ RY A +L E+ Sbjct: 748 AQDYDNFQNQPSLYLHTTEEMLDKASEIFEDEIIVREVVIDNSRYIA-----SLIEEVTP 802 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + L IE +++ ++ E G E + L L+ +I Sbjct: 803 -----VEGKLHPPVIEGADEEVRKMAIENAESLYGSPLPEIVERRLNRELEAII 851 >gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] Length = 1561 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 60/393 (15%), Positives = 106/393 (26%), Gaps = 37/393 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G +R + V+V + + F D + +T Sbjct: 536 DTYVVFDIETTGFSPEKNRIIEIGAVKV-TDGKITDKFSTF---VNPDVPIPFDIEKLTS 591 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I L + + + QF + +N FD + + + Sbjct: 592 INDAMVL--PYPKIDVI--LPQFLEFVGDAALVAHNASFDVGFIGHYAEKQGLAFNPT-- 645 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +LD + P+ + FKL +A A I N H A D Sbjct: 646 --------VLDTVTMARLLLPNLNR----------FKLDTVAKALNISLANHHRAVDDAG 687 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + + D N I+ + P HV + L Sbjct: 688 CTAEIFAAFVKMLRDRDVETLDQLNSLNAMNEDTIRKL-PTYHVIILAKNDIGRINLYRL 746 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300 V+W H Y S + + L + L+G + + VH Sbjct: 747 VSWSHLTYYARRPRIPKSVLSQYREGLLIGSACEAGELYQAMLRGAPASEVARLVHFYDY 806 Query: 301 PILMPIDYCKKEHFERWG-----IDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P+ + D K + L + + Sbjct: 807 LEIQPLGNNSFMLRDEKSTVKTEEDLKEINRRIVNLGEHFGKPVCATCDVHFLDPQDEVY 866 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388 + F D D Q + T E L+ + Sbjct: 867 RRIIMAGQGFKDSDDQAPLYLRTTE-EMLAEFD 898 >gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1437 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 65/472 (13%), Positives = 139/472 (29%), Gaps = 41/472 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 469 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E R QF + I+ +N+ FD + N + R+ Sbjct: 470 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 519 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A AD AT Sbjct: 520 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 566 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 567 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 626 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 627 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 686 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + + L + + + ++ + + D +Y Sbjct: 687 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDDLEKPVVVTGDVHYLDQHDA---IYRKI 743 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL----FFRYRARNFPHTLSEKEKQDW 420 + P+ D L + N L D Sbjct: 744 LIHSQGGANPLNRHSLPDVHFRSTREMLDD-FSWLGAEKAQKLVVTN--SNLIADLIDDD 800 Query: 421 LEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + K L + + KL+ + + E G+ E + L + L+ +I Sbjct: 801 ITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 852 >gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319] gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319] Length = 1436 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 69/475 (14%), Positives = 134/475 (28%), Gaps = 47/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ ++ E I+ E F + + +TGI Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKM-KEGEIIDRFERFA---NPHHPLSATTIELTGI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E R H++ I+ +N FD + + + Sbjct: 476 TDDMVQNAPEI-SEVLRDFHEWM---GDSILVAHNASFDMGFLNMGLQKIGLEKAANG-- 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y + +L LA IE V H A D Sbjct: 530 ----VIDTLELGRFLY-------------PHMKNHRLNTLAKKFDIELVQHHRAIYDAET 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + E R + + + Q P Sbjct: 573 TGYLLNKMLK-DAFEREITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + + R ++ + + Sbjct: 632 ISHLNYFYRVPRIPRSQLDKYREGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P D K D K ++ L ++ + + ++Y Sbjct: 692 QPPDNYKHLIELDLVRDEKALK---DIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRK 748 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEKEK 417 P+ ++ +D L F + + + + Sbjct: 749 ILIGSQGGANPLNRHQLPD----VHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKI--ADM 802 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 D ++ K L +IE +++ +S E L L + L+ +I Sbjct: 803 IDDIKPIKDDLYTPKIEGADEEMREMSYAMARSIYGEDLPEVVEARLEKELKSII 857 >gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1554 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 57/402 (14%), Positives = 108/402 (26%), Gaps = 45/402 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G ++ + V+V + + F D + +TG Sbjct: 529 DTFVVFDIETTGFSPKKNKIIEIGAVKV-VDGKITDRFSSF---VNPDVPIPFDIEKLTG 584 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I L + + + QF ++ +N FD + + Sbjct: 585 INDSMVL--PYPKIDVI--LPQFLDFVGDAVLVAHNASFDVGFISHFAEEQGLHFNPT-- 638 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +LD + P+ + FKL +A A I N H A D Sbjct: 639 --------VLDTVTIARLLLPNLNR----------FKLDTVAKALNISLANHHRAVDDAG 680 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + + N I+ + P HV + L Sbjct: 681 ATAEIFAAFVRMLRDRGVTDLEALNGMSTMDTNTIRKL-PTYHVIILAKNDIGRVNLYRL 739 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHL 297 V+W H Y S + + L + L+G I Sbjct: 740 VSWSHLEYYARRPRIPKSILDKYREGLIIGSACEAGELYQALLRGAPDAEIARLVNFYDY 799 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + L + ++ + N ++ A + + +V Sbjct: 800 LEIQPLGNNSFMLRDEKSTVKSEADLIEINKKIVELGMQFNKLVCATCDVHFLDPQDEVY 859 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ D + + L L ++ + E Sbjct: 860 RRIIMAGQGFKDS-----------DDQAPLYLRTTEEMIKEF 890 >gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705] gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705] Length = 1444 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 64/472 (13%), Positives = 138/472 (29%), Gaps = 41/472 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E R QF + I+ +N+ FD + N + R+ Sbjct: 477 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A D AT Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANVDAEAT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 574 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + + L + + + ++ + + D +Y Sbjct: 694 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDDLEKPVVVTGDVHYLDQHDA---IYRKI 750 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL----FFRYRARNFPHTLSEKEKQDW 420 + P+ D L + N L D Sbjct: 751 LIHSQGGANPLNRHSLPDVHFRSTREMLDD-FSWLGAEKAQKLVVTN--SNLIADLIDDD 807 Query: 421 LEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 + K L + + KL+ + + E G+ E + L + L+ +I Sbjct: 808 ITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 859 >gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] Length = 1464 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 114/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIEEFDEF---IDPGHPLSAFTTQLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F ++ +N FD + + R+ Sbjct: 481 TNEHVRGA-KPLVQVLKEFQAF---CEGTVLVAHNATFDVGFMNANYERHGLP------K 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ITQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVGLEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 578 TGRLLFIFIKDVAEKHGVTNLKDLNIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 +Y + V + + L + V ++ + Sbjct: 638 LSGTKYFEGVPRIPKTVLDAHREGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + + L + + Sbjct: 698 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 757 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + L + ++ L E F R + Sbjct: 758 RSLGQGAMINRTIGHGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNA 814 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L I++ + + L Sbjct: 815 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 844 >gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] Length = 1463 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] Length = 1474 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 53/407 (13%), Positives = 119/407 (29%), Gaps = 42/407 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V++D ET G D+ + V+V + I+ F + + Sbjct: 405 LNDRYVVFDLETTGFSAKSDKIIEIGAVKV-ENGKIIDRFSTF---VNPEIPIPFRIEKL 460 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I + + +E E + +F ++ +N FD + R + Sbjct: 461 TSINDEMVIDAPKIE-EILPQFMEF---CKDSVMVAHNSDFDMSFIEANCKRQDLEC--- 513 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + ++D + + +KL ++A A GI + H A D Sbjct: 514 -------DFTVIDTVAMSRYLIIGLGR----------YKLDNVAKALGIVLDHHHRAVDD 556 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--VSGMFGASRSNTA 238 T + + + D N+ + I + P H + R N Sbjct: 557 AECTALIFLKLCKMLEGKGIDNLDELNRQGKQSKNLIDKL-PAHHAIILVKNQVGRVNLY 615 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KE 294 + + + + S + + + L + L G I + Sbjct: 616 KLISKSHIETFANKRPRILKSDYLELSEGLIIGSACEAGELYQAILHGKSQQEIARLAEF 675 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + + ++ K K ++++ L++ K I + Sbjct: 676 YDYFEVQPIGNNEFMLKTGDPEIDDRKKFLVDSVEELQE-----VNKKIIDLGKKFNKMT 730 Query: 355 DVDSQLYDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399 ++ D + + + + + L L +D L E Sbjct: 731 VATCDVHFLDPEDEIYRRIIQCGNGFKDADNQAPLYLRTTDEMLKEF 777 >gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 1487 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 116/404 (28%), Gaps = 48/404 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V+V + + F + E +T Sbjct: 450 DAFVVFDIETTGFSSVKDKIIEIGAVKV-ENGKIVSRYSTF---VNPEVPIPFEITKLTS 505 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E + +F ++ +N FD + R + S Sbjct: 506 ITDAMVIDAPKIE----TVLPEFMEYVGDAVLVAHNAGFDVGFIEENCRRLGMERKLTS- 560 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + R + +KL +A GI N H A D Sbjct: 561 ------VDTVALARV-------------LLPTLSRYKLNIVAKTLGISLENHHRAVDDAG 601 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E + N+ I+ M P HV + L Sbjct: 602 ATAEIFVKFVEMLKEREITTLKGVNEFGAMNPDAIRKM-PAHHVIILAKNDVGRVNLYTL 660 Query: 243 V-AWHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEV 295 V H +Y + S R + L ++ +L + + E + V + Sbjct: 661 VSMSHLKYFGRMPRIPKSELNRYREGLIVGSACEAGELYQAILNDKSEEQIAKIVNFYD- 719 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 +L P+ + E N +++ + + + + Sbjct: 720 YLEIQPLGNNAFMLESERISNVNTKEDLIQINKKIVKLGEEFQKMVVGTCDVHFLDPDDE 779 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 V ++ + + + L L ++ + E Sbjct: 780 VYRRIIMTGKGF-----------SDADDQAPLYLRTTEEMMSEF 812 >gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] Length = 1464 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 114/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIEEFDEF---IDPGHPLSAFTTQLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F ++ +N FD + + R+ Sbjct: 481 TNEHVRGA-KPLVQVLKEFQAF---CEGTVLVAHNATFDVGFMNANYERHGLP------K 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ITQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVGLEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 578 TGRLLFIFIKDVAEKHGVTNLKDLNIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 +Y + V + + L + V ++ + Sbjct: 638 LSGTKYFEGVPRIPKTVLDAHREGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + + L + + Sbjct: 698 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 757 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + L + ++ L E F R + Sbjct: 758 RSLGQGAMINRTIGHGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNA 814 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L I++ + + L Sbjct: 815 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 844 >gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424] gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424] Length = 1446 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 77/475 (16%), Positives = 147/475 (30%), Gaps = 46/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + A V+V + +I+S E + + +T I Sbjct: 425 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGAEIDSFESY---INPERPISELITRLTSI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T V E E + + + I+ +N +FD + F R ++ Sbjct: 481 TDDDVRDAPV-EKEVMTDFYNWLDEDD--ILVAHNAKFDLGFIDKSFERLGLEN------ 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L + RA + A L +LA + V H A D A Sbjct: 532 KNNASIDTLFISRA-------------ENKEAKRHGLSNLAKMYKVRLVQHHRAIYDTKA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + + L ++ + K ++ T + + L++ Sbjct: 579 TAEIFIKMLNQLYALGIERHNEIDNKIDLKFAHTRSRTFPCSILVKNAKGLKDLFRLVSY 638 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 S + QDL + L + Sbjct: 639 SCTEYL-SSGKPTIPRSLLEQYRQDLLIGSGNSENEVFEELLNSKEDKVESIIDFYDYIE 697 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK-----AIYNKPYTSSSQDVD 357 + P+++ + D L L + + + Y Y + + Sbjct: 698 IQPMNHYESFITNERIADKTELEIILKKLISLSKKKGKIVVATGDCYYLDEYQHVYRQIL 757 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 D + M L T E++ F D+ L E H +S+K Sbjct: 758 RLSVKNNPGARDIKPMATFLTT--EEMLE-EFSFLDKELRE----EIVIENTHKISDKI- 809 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + K L I+ +++++L + + G+E E + L + L +I Sbjct: 810 -ELVVPLKDKLYTPNIKGAADEVRNLSYSMAHKIYGEELPEIVEKRLEKELTSII 863 >gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] Length = 1448 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 54/479 (11%), Positives = 135/479 (28%), Gaps = 47/479 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +VI+D ET G D+ + + ++ + + ++ + F + + + Sbjct: 424 LNSTYVIFDVETTGLSAIYDKVIELSATKM-KDGKVLDRFDEF---IDPGFPLSEQTTEL 479 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT E E + F II +N+ FD + + R+ Sbjct: 480 TSITDDMVQGS-KSEEEVFKMFQDF---CAGSIIAGHNVSFDMGFMNTGYQRHHLPEI-- 533 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R +Y ++L L+ + + H A D Sbjct: 534 ----TQPVIDTLPLARFLY-------------PDLRGYRLNTLSKKFKVSLEHHHRANYD 576 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT L+ + + K ++ +Y + ++ P + Sbjct: 577 AEATGHLLHIFLKDAEKRYQVVYVDDLNKHMTDNGAYRHARPFHVTLLAKNQAGLKNMYK 636 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + +Y V S R + L ++ ++ Sbjct: 637 LVSLANVKYFYRVPRIPRSVLERYREGLLIGSACSSGEVFTAMMQKGYAEAKQKAAFYDY 696 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + P ++ +L + + + Sbjct: 697 LEVQPKPNYAPLLEQKVISS----EHHLESIIKNMIKLGDELGKTVVATGDAHYLNPEDA 752 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR-------YRARNFPHTLS 413 + + + +T + ++ +D L E F N Sbjct: 753 IYRKILINSQGGANPLNKT---KRPDVHFRTTDEMLQEFDFLGSDLAHQIVVENTHKIAD 809 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 E +++ + + L ++ + ++Q + ++ GD + + + + L ++ Sbjct: 810 EVDQE--ISPVEDKLYTPHMKGAEQEIQDRTWATAKKWYGDPLPKLVYDRVKLELDSIV 866 >gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] Length = 1438 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 53/476 (11%), Positives = 127/476 (26%), Gaps = 50/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G V ++ + A V++ ++++ F +T I Sbjct: 420 TYVVFDIETTGLSVTQNKIIEIAAVKM-HDGKEVDRYATF---VNPHERIPYNIQQLTNI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +F + ++ +N RFD + + Sbjct: 476 NDEMVKDAP----DVEPVMKEFVAFAGDAVLVAHNARFDVGFIQATLRNMGLPEM----- 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R + +L L + + H A D A Sbjct: 527 -TNPVLDTLELARL-------------LFPTMKNHRLNTLTTKYKVALESHHRAIDDTVA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 ++ + ++ R + + K + + ++ L++ Sbjct: 573 LTEVLNGLLNDAEQIKGLKMLDRLNDYVGKDLSTVRPFHCCIYALNPIGKKNLYKLVSM- 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + L + ++ L + + Sbjct: 632 -SHTEYFKRVPCIPKSKLSEMRDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEI 690 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P+ ++ + + + L A N Y + + + Sbjct: 691 QPLTMYMHLVEKQLVSGPDALKTAIRKVCEIGRRLDKPVIATGNVHYLETRDKLYRDITI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418 + +L +D L E F + + + + Sbjct: 751 HGITG--------FSPLKDIRKPDAHLRTTDEMLAEFEF--LGEEKAYEVVVKNTSELAD 800 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 + E L ++ ++++ E E L L + L+ +I Sbjct: 801 RFEELELFPDKLFTPLLDGADEEIRNTCYETAKSIYGEELPEVVVARLEKELEPII 856 >gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. SR1/5] Length = 1129 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 66/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G R + V+V + + + F + +T I Sbjct: 102 FVVFDIETTGFSALTCRIIEIGAVKV-EKGQITDRFSTF---VNPEVPIPFRIEQLTSIN 157 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L V+E + +F C++ +N FD + R + Sbjct: 158 DSMVLDAPVIE----EVLPKFLEFCEGCVMVAHNADFDMSFIIENCKRQGI-------SD 206 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + + R FKL +A A G+ + H A D T Sbjct: 207 DFTYVDTVGMAR-------------FLLPALNRFKLDTVAKAVGVSLDHHHRAVDDAACT 253 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + + + D N+ I+ + P H L V+ Sbjct: 254 AEIFVRFVKMLEERDIFDVDEMNRQGAVSPDTIRKL-PTYHAIVFARNETGRINLYKLVS 312 Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPI 302 H +Y S + + L + L+ I + V+ Sbjct: 313 QSHLKYYHRRPRVPKSVLEKYREGLLVGSACEAGELYQALLRNAPDQEIARLVNFYDYLE 372 Query: 303 LMP----IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P E + + N +++ + A + + +V Sbjct: 373 IQPLGNNAFMLADEKHDMINSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQDEVYR 432 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 ++ + + + L L ++ L E Y + Sbjct: 433 RIIMAGNGF-----------SDADNQAPLYLRTTEEMLEEFS--YLGSEKAEEVVITNTN 479 Query: 419 DWLEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 + + ++ IE + L+++ + E GD + + + L L + Sbjct: 480 KIADMI-EKISPIHPDKFPPVIENSEQDLKNICFTKAHEMYGDPLPKIVEDRLDRELNSI 538 Query: 468 IP 469 I Sbjct: 539 IS 540 >gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] Length = 1463 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLVSPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGERLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMVNRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + E K L I++ + + L Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM 43833] gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM 43833] Length = 574 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G A D + V+V + P +TGI Sbjct: 19 TFVVFDLETTGGSPAEDAITEIGAVKV-CGGQVRGEFATL---IDPGRPIPPFISVLTGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + +N FD + R Y Sbjct: 75 TDAMVVAAPK-LPQVLPAFLEFIR---GATLVAHNAPFDLGFLRAACAEYGYPPPAN--- 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D D+ R + D KL LA H A AD A Sbjct: 128 ---PVVDTADLARRM-----------LTRDETPDCKLATLARYFRSATEPCHRALADARA 173 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + + Sbjct: 174 TVDVLHGLLERAGALGVHTLE 194 >gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4] gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4] gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae TIGR4] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + + E K L I++ + + L Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54] gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae G54] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + + E K L I++ + + L Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200] gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + + E K L I++ + + L Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 595 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 22/195 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + R + VRV R E + +TGI Sbjct: 25 SFVVLDLETTGTSASGSRITEVGAVRV-RGGEVVGEFATL---VNPGTPIPANITLLTGI 80 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E R+ F ++ +N FD + + R+ D Sbjct: 81 TQSMVASAPPME-EVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWP----- 134 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G D L + RA+ A + +L LA G+ H A D A Sbjct: 135 -GYPVVDTLRLARAVLA-----------RGETRNHRLATLAAYFGVPVAPNHRALEDARA 182 Query: 184 TLALVWLIREKKPKL 198 T+ ++ + E+ + Sbjct: 183 TVGVLHGLVERLRPM 197 >gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974] gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] Length = 1464 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 113/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIEEFDEF---IDPGHPLSAFTTQLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F ++ +N FD + + R+ Sbjct: 481 TNEHVRGA-KPLVQVLKEFQAF---CEGTVLVAHNATFDVGFMNANYERHGLP------K 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ITQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVGLEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 578 TGRLLFIFIKDVAEKHGVTNLKDLNIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 +Y + V + + L + V ++ + Sbjct: 638 LSGTKYFEGVPRIPKTVLDAHREGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + L + + L + + Sbjct: 698 MPPAIYAPLIAKEQVKDMDELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 757 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + L + ++ L E F R + Sbjct: 758 RSLGQGAMINRTIGHGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNA 814 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L I++ + + L Sbjct: 815 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 844 >gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + E K L I++ + + L Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6] gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Hungary19A-6] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + E K L I++ + + L Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] Length = 1113 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA] gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae JJA] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 114/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 P L + ++ L E F H L + Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAF--LGEELAHRLVIENTNAL 814 Query: 421 L------EHRKKMLTRSRIEEYKNKLQSL 443 E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141] Length = 1463 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] Length = 1449 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 73/477 (15%), Positives = 139/477 (29%), Gaps = 50/477 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + A V+V + +I+S E + +T I Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGAEIDSFESY---INPQRPISELITRLTSI 483 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E + + + I+ +N +FD + F R ++ Sbjct: 484 TNDDVKDAPL-EKEVMTNFYNWLDKDD--ILVAHNAKFDLGFLDTCFERLGLEN------ 534 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L V RA + A L +LA + V H A D A Sbjct: 535 KNNASIDTLFVSRA-------------ENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKA 581 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + ++ +L ++ ++ +L ++ T + + L++ Sbjct: 582 TAEIFVKMLDQLYELGIEYHNEIDEKIDLELAHKRSRTFPCSILVKNAKGLKDLFRLVSY 641 Query: 243 VAWHPRYK-DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 I +L R + S +F + L + Sbjct: 642 SCTKYLNSAKPTIPRSLLAQYREDLLIGSGNGDNEVF--EELLNSKEAKVEDIIDFYDYI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P + D+ E L L Q +++ Y + Sbjct: 700 EIQPKHHYANFIRNERIADNAELEEILKKLIQLAKKKEKIVVATGDCYYLDEYQHVYR-Q 758 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + L ++ L E Y L Sbjct: 759 ILRLTVKSNPGARDL-------KPMATLLTTEEMLKEFS--YLDEQLREELVIDNTHKIN 809 Query: 422 EHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K L IE +++++L + G+E E + L + L +I Sbjct: 810 DMIELVVPLKDKLYTPNIEGAADEVRNLSYDMAHRIYGEELPEIVEKRLEKELASII 866 >gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] Length = 1487 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 76/484 (15%), Positives = 140/484 (28%), Gaps = 60/484 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G D+ + V+V E F +TG Sbjct: 446 DTFVVFDLETTGFSSIKDKIIEIGAVKV-EGGRITEKFSTF---VDPKIPIPFRITQLTG 501 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT Q + +EA + F + +N FD + + Sbjct: 502 ITDQMVMDAPEIEA----ALPAFLEFAGDAALVAHNAGFDVGFIDQNCR----------Y 547 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +D + P + FKL +A A I N H A D Sbjct: 548 MDITPDFTAVDTVAMSRILLPTLSK----------FKLNVVAKALNISLENHHRAVDDAG 597 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + + + + N+ I+ + P HV + L Sbjct: 598 ATAEIFVRFVDMLKERGIHTLARLNQFGSSNANAIRKL-PSFHVIILAKNETGRVNLYKL 656 Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300 ++ H Y S R + L + L I + V+ Sbjct: 657 ISKSHLDYFGRQPRIPKSELSRHREGLIVGSACEAGELYQAILDDKSQERIARIVNFYDY 716 Query: 301 PILMPI--DYCKKEHFERWGIDHKRCLENLT--LLRQQTNLRDRFKAIYNKPYTSSSQDV 356 + P+ + I + L+N+ +++ R A + + +V Sbjct: 717 LEIQPLGNNKFMIASERISKIHSEEDLKNVNRTIVKLGEKFRKPVVATCDVHFMDPEDEV 776 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRY---RARN----FP 409 ++ T ++ + L L +D L E +AR P Sbjct: 777 YRRIIMAGKGF-----------TDADEQAPLYLRTTDEMLAEF-EYLGSAKAREVVIDNP 824 Query: 410 HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465 + +++ + R I + L+ + + GDE E + L L Sbjct: 825 NKIADSV-ERISPVRPDK-CPPVIPDSDQMLRDICYNKARSMYGDELPEVVTERLERELN 882 Query: 466 WVIP 469 +I Sbjct: 883 SIIS 886 >gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] Length = 1464 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIIAEFDEF---INPGHPLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 481 TDDHVKNA-KPLVQVLKEFQEF---CKDTVLVAHNASFDVGFMNANYERHGLP------K 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 578 TGRLLFIFIKEVAEKHGVTDLARLNLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 638 LSNTQYFEGVPRIPRTVLDAHREGLILGSACTEGEVFDAVVSQGVDAAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y ++ ++ Sbjct: 698 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEDEIYREIIV 757 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 758 RSLGQGAMINRTIGHGEAAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNAL-- 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 816 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 844 >gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] Length = 1431 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 73/476 (15%), Positives = 133/476 (27%), Gaps = 49/476 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G ++ + A V++ + I+ E F +L + +TGI Sbjct: 413 TFVVFDVETTGLSAMYNKIIELAAVKI-YDGDVIDKFEAFA---DPKHLLSATTIDLTGI 468 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + +F I+ +N FD + ++ Sbjct: 469 TDEMVRGKPDPE----QVVKEFMDWAGGSILVAHNASFDIGFLNATLRSGNHEE------ 518 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R + +L LA IE H A D A Sbjct: 519 STLPVIDTLELARV-------------LMPSLKNHRLNTLAKRFDIELTQHHRAIYDAEA 565 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + + ++F ++ K DI P + Sbjct: 566 TGYLMLKLLQMADEMFNMKTHLSLNREMGK--DISRARPYHATVYAKNRTGLKNLYQLIS 623 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H ++ V+ S + L L K + + Sbjct: 624 LAHTKHVHRVVRTPRSQLVAHRDGLIIGSACDNGEVFDAALNKSDEDLAKVMRFYDFIEI 683 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + E + + + D + D + Sbjct: 684 QPPAMYGHLIEREIVQNELELRELIKKVIRVAEENDILPVATGNVHYLDQHDATYREVLI 743 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF----FRYRARNFPHTLSEKEKQD 419 + R P T SD L R N ++ Sbjct: 744 RTQGGANMLNMRKQ-LPPAHFRTTQEMMSD--FKFLGPDVSERLVITN------SQQVAG 794 Query: 420 WLEHRK---KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 W E+ K L +IE +++SL + + GD E + L + L+ +I Sbjct: 795 WFENIDIIPKDLFTPKIEGADEEVRSLSYDMAHQIYGDVLPEIVEARLEKELKSII 850 >gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] Length = 1463 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] Length = 1441 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 74/477 (15%), Positives = 142/477 (29%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + A V++ E I+ E F + + +TG Sbjct: 424 DTYVVFDVETTGLSAVYDTIIELAAVKI-HDGEIIDRFESFA---NPHHPLSATTINLTG 479 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT VE E ++ H+ ++ +N FD + + + Sbjct: 480 ITDDLVENAPEVE-EVLKKFHE---WAGDAVLVAHNASFDMGFLNVGYKKMGIG------ 529 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L LA +E H A D Sbjct: 530 KASNPVIDTLELARFLY-------------PDMKNHRLNTLAKKFDVELTQHHRAIYDAE 576 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D N + + + Q P Sbjct: 577 ATGYLLLKMLKHADEKGIEYHDQFN-DNMGQGNAYQRARPAHCTLLAQTEEGLKNIFKLV 635 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + + ++ Sbjct: 636 SISHLEYFYRVPRIPRSVLQKHRAGILVGSGCDKGEVFEGMMQKSPDEVEDTAQFYDYLE 695 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL- 360 + P D K E + +++ L A N Y + + + ++ Sbjct: 696 VHPKAVYAHLLELELVRDEKALEEIIGNIVKLGEKLDLPVVATGNVHYLNPNDKIYRKIL 755 Query: 361 --YDGFFADVDRQIMDRIL-RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 G ++R + + RT E L + D+ N + + Sbjct: 756 VNSQGGANPLNRHQLPDVHFRTTNEMLDAFSFLGKDK-----AKEIVVEN-----TNRIA 805 Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 E K L +IE +++S ++ + GD E + L + L+ +I Sbjct: 806 DMIEEIKPIKDDLYTPKIEGADEEMRSMSYGMARKIYGDPLPEIVEARLEKELKSII 862 >gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1433 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3] gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3] Length = 1433 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYIDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264] gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus B4264] gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] Length = 1433 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579] gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] Length = 1435 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 630 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 748 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 749 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 798 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 799 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856 >gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] Length = 1464 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 110/402 (27%), Gaps = 46/402 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G + + VRV + +E F +T I Sbjct: 439 SFVVFDLETTGFSPMSCQIIEIGAVRV-EDGKIVERFSTF---VNPKVPIPFRIEQLTSI 494 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + V+E + +F + ++ +N FD + R Sbjct: 495 NDSMVMDAPVIE----EVLPKFLEFCSGAVMVAHNADFDMSFVEFNCDRLGIP------- 543 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D + + R FKL +A A I + H A D Sbjct: 544 HDFTYIDTVGMAR-------------FLLPSLNRFKLDTVAKALEIPLGHHHRAVDDAAC 590 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + ++ + E + + + + + T + A R N + Sbjct: 591 TADIFVKFVKMLADREIENVDVLNCQGSVSENTVKKLPTYHAIILASSEAGRINLYKLVS 650 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHLN 298 + H +Y + S + + L + L+ P I Sbjct: 651 L-SHLKYYNRRPRVPKSVFEQHREGLIIGSACEAGELYQALLRDASPQEIARLVNFYDYL 709 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + L + + + E N +++ + A + + +V Sbjct: 710 EIQPLGNNKFMIADEKNDKVHSMEDLKEMNRKIVKLGEQFQKPVVATCDVHFMDPKDEVY 769 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ + + L L ++ L E Sbjct: 770 RRIIMSGKGFG-----------DADDQAPLYLRTTEEMLEEF 800 >gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1464 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 54/403 (13%), Positives = 108/403 (26%), Gaps = 34/403 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 425 TYVVFDVETTGLSAVNNELIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E + F ++ +N FD + + R+ Sbjct: 481 TDNHVRNAKPIE-EVLQMFQDF---CQDTVLVAHNATFDVGFMNANYERHGMPII----- 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFE--YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + + D K + ++ L++ Sbjct: 578 TGRLLFIFLKEARENHNLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V + + L L V +K Sbjct: 638 --LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFI 695 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + D + + + L + L A N Y ++ ++ Sbjct: 696 EVMPPALYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREI 755 Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L E F Sbjct: 756 IVRSLGQGAPINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAF 798 >gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1433 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] Length = 1440 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 65/475 (13%), Positives = 133/475 (28%), Gaps = 47/475 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + A V++ E I+ E F + + +TGI Sbjct: 424 TYIVFDVETTGLSAVYDTIIELAAVKI-HDGEIIDRFESFA---NPHHPLSATTIDLTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + +F I+ +N FD + + R Sbjct: 480 TDDDVRNAP----EVEEVLRRFKEWSQNDILVAHNASFDMGFLNTGYKRYGLG------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R + +L LA +E H A D A Sbjct: 530 AANPVIDTLELAR-------------FLLPEMKNHRLNTLAKKFDVELTQHHRAIYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ + ++ + Y + + + K Q P + Sbjct: 577 TGYLLIKMLKEVMQKGIE-YHNQLNDNMGKGNAYQRARPSHCTLLAQTEAGLKNLFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + + + R ++ + Sbjct: 636 ISHMNYFYRVPRVPRSLLEKYREGILVGSGCDRGEVFEAMMQKGPEEAEDLASFYDYLEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P D K E ++ L ++ + ++Y Sbjct: 696 HPKAVYAHLIELELVRDEKALEE---IISNIVKLGEKLDIPVAATGNVHYLNPVDKIYRK 752 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW--- 420 + P+ ++ ++ L F + + + + Sbjct: 753 ILINSQGGANPLNRHQLPD----VHFRTTNEMLD--AFSFLGKEKAKEIVVENTNKVADM 806 Query: 421 ---LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 ++ K L +I+ +++++S + GDE E + L + L+ +I Sbjct: 807 IDSIKPIKDDLYTPKIDGADEEMRNMSYDMARRIYGDELPEIVEARLEKELKSII 861 >gi|320086501|emb|CBY96272.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 157 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDR 375 W + + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+D DR M Sbjct: 5 WELTRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLYDGFFSDADRAAMKI 64 Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435 +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT +++ Sbjct: 65 VLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQ 124 Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 Y N+LQ LS +Y D+ K GL+ +L++Y ++ Sbjct: 125 YANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 157 >gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1] gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] Length = 1433 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + ++ ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMILLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + + + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLNPEDAMY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2] gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2] Length = 1438 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 46/399 (11%), Positives = 106/399 (26%), Gaps = 38/399 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G V ++ + A V++ + ++I+ F +T I Sbjct: 420 TYVVFDIETTGLSVTQNKIIEIAAVKM-HEGKEIDRYATF---VNPHERIPYNIQQLTNI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +F + ++ +N RFD + + + Sbjct: 476 NDEMVKDAP----DVEPVMKEFVAFAGDAVLVAHNARFDIGFIQATLRKMGLPEM----- 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R + +L L + + H A D A Sbjct: 527 -TNPVLDTLELARL-------------LFPTMKNHRLNTLTSKYKVALESHHRAIDDTVA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 ++ + ++ R + + K + + ++ L++ Sbjct: 573 LTEVLNGLLNDAEQIKGLKMLDRLNDYVGKDLSTVRPFHCCIYALNPVGKKNLYKLVSM- 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + L + ++ L + + Sbjct: 632 -SHTEYFKRVPCIPKSKLSEMRDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEI 690 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P+ ++ + + L A N Y + + + Sbjct: 691 QPLTMYMHLVEKQLVSGPDALKTAIRKVCDIGKRLDKPVIATGNVHYLETRDKLYRDITI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 + +L +D L E F Sbjct: 751 HGITG--------FSPLKDIRKPDAHLRTTDEMLAEFEF 781 >gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 905 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 43/401 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G ++ + V+V E E F + +T Sbjct: 473 DTYVVFDLETTGFSPDKNKIIEIGAVKV-EHGEITERFSTF---VNPEVPIPYRIEELTS 528 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +E + QF I+ +N FD + R + Sbjct: 529 IRDDMVIDAPKIE----TILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 578 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + ++D + P + FKL +A A G+ N H A D Sbjct: 579 ----KEFTIIDTVALARILLPQLNR----------FKLDTVAKALGVSLENHHRAVDDAG 624 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG--ASRSNTALI 240 T + + D N+ I M + + LI Sbjct: 625 CTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIMKMNTYHAIILATNDIGRINLYRLI 684 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298 + K I + R L S A L+ + + + +K Sbjct: 685 SLSHLTYYNKRPRIPKSEFVKYREGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYDYL 744 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + L ++ K E + N +++ A + + ++ Sbjct: 745 EIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYR 804 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ + + L L ++ L E Sbjct: 805 RIIMAGKGFK-----------DADDQAPLYLRTTEEMLKEF 834 >gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] Length = 1499 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 54/397 (13%), Positives = 104/397 (26%), Gaps = 38/397 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + V+V + E F +T IT Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKV-ENGKITERFSTF---VNPKIPIPFRITQLTSIT 517 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + + + QF ++ +N FD + + + Sbjct: 518 DQMVMDAP----DIDTVLPQFLEFIGDAVLVAHNASFDVGFIEQNCR----------YQD 563 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D + P + FKL +A A I N H A D AT Sbjct: 564 IVPNFTSVDTVAMARILLPTLSK----------FKLNVVANALHISLENHHRAVDDAGAT 613 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + E + N+ I+ + P HV + L ++ Sbjct: 614 AEIFVKFVEMLKERNINDLARLNQFGSNNADAIKKL-PTYHVIILALNEVGRVNLYTLIS 672 Query: 245 -WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302 H Y S + + L + L + + V+ Sbjct: 673 KSHLDYYARRPRIPKSELSKYREGLMVGSACEAGELYQAILNEKSEERIARIVNFYDYLE 732 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P+ + + + E+L + ++ Sbjct: 733 IQPLGNNRFMIASDRIENVQS-EEDLKKINKKIVDLGDRFNKPVVGTCDVHFMDPEDEVY 791 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + ++ + L L +D L E Sbjct: 792 RRIIMAGKGFG------DADEQAPLYLRTTDEMLEEF 822 >gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1433 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] Length = 1433 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] Length = 1463 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I + + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFINKAEETVAEL 843 >gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 1433 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1437 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 59/475 (12%), Positives = 139/475 (29%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 469 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + + QF + I+ +N+ FD + N + R+ Sbjct: 470 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 519 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A AD AT Sbjct: 520 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 566 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 567 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 626 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 627 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSNGEVFTAMMQKGEAEARAKASFYDYLEVQ 686 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P+ + + + + + + ++ + D +Y Sbjct: 687 PLPVYQPLIEAGLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDA---IYRQI 743 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423 + P+ ++ + L + + H L Sbjct: 744 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 797 Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 K L + + L+ + + E GD + + L + L+ +I Sbjct: 798 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 852 >gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47901] Length = 1463 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPILATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] Length = 1463 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 100/401 (24%), Gaps = 30/401 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLKQVLQEFQEF---CQDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTNLARLNIDLISPDSYKKARVKHATIYVKNQIGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L V ++ + Sbjct: 637 LSNTQYFEGVPRIPRTVLDAHREGLILGTACAEGEVFDTILSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + L+ L A N Y ++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDLAELETIIKNLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L E F Sbjct: 757 RSLGQGAVINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAF 797 >gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] Length = 1463 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSVFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334] gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei ATCC 334] Length = 1444 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 59/475 (12%), Positives = 139/475 (29%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + + QF + I+ +N+ FD + N + R+ Sbjct: 477 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ R ++ + KL LA + + H A AD AT Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + ++ K++ + +++ + P + + Sbjct: 574 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S ++ + L ++ + + Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSNGEVFTAMMQKGEAEARAKASFYDYLEVQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P+ + + + + + + ++ + D +Y Sbjct: 694 PLPVYQPLIEAGLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDA---IYRQI 750 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423 + P+ ++ + L + + H L Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 804 Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 K L + + L+ + + E GD + + L + L+ +I Sbjct: 805 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 859 >gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] Length = 1432 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 141/480 (29%), Gaps = 56/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G DR + V++ + + I+ + + V +TG Sbjct: 418 DEYIVFDIETTGLSNRNDRITEIGAVKI-KDSQVIDKFSAL---VNPEMKIPSKIVELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + F + + + +N FD + R R Sbjct: 474 ITDDMVVDKQTI--DVI--LPGFLAFIGSSPVVAHNSDFDMGFIRENANR-------IER 522 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + R +L +A + N H A D Sbjct: 523 TIENQVIDTLKLSRI-------------LLPQLKRHRLNSIAKELNVSLENHHRAVDDAQ 569 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 AT + E + Y + N ++ + + T + + ++ +I+ Sbjct: 570 ATAEIFVKFIELLKQKEVYTLEEVNTKLVKDVDYKKLDTYHIMIYAKNQKGLKNLYQIIS 629 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 YK + ++ R + + A L+ S K + K Sbjct: 630 ESHLEYFYKKPRVPKSILTKYREGLLIGTACEAGELYKSILGNKPESDIE-KTASYYDYL 688 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + PI + + + + N + ++ DV Sbjct: 689 EIQPISNNQFLLEKGMVNTTEELQNINKKIVALGNKINL--------PVIATGDVHFLDP 740 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR--------NFPHTLS 413 + T + + L L +D L E FRY N P L+ Sbjct: 741 NDEVFRKILMAGQGF--TDADNQAPLYLKTTDEMLDE--FRYLGSKTAKDVVVNNPRKLN 796 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E+ ++ IE +L+ + + G+ E + L + L +I Sbjct: 797 EEIEKLI--PIPDGTFPPEIEGSDEELRRMCYEKAERIYGNPIPEIVKTRLDKELNSIIS 854 >gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus thuringiensis serovar finitimus YBT-020] Length = 970 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 142/475 (29%), Gaps = 45/475 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + + + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLNPEDAMY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQD 419 + P ++ +D L F AR T ++K Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSFLGEDVAREIVVTNTQKIASL 799 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 800 IGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17570] Length = 1463 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I + + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFINKAEETVAEL 843 >gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1464 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 53/406 (13%), Positives = 107/406 (26%), Gaps = 40/406 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G + Q A ++ + +E + F + +TGI Sbjct: 425 TFVVFDVETTGLSAVNNDLIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E + F ++ +N FD + + R+ Sbjct: 481 TDNHVRNAKPIE-EVLQMFQDF---CQDTVLVAHNATFDVGFMNANYERHGMPII----- 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFE--YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + + D K + ++ L++ Sbjct: 578 TGRLLFIFLKEARENHNLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V + + L L V +K Sbjct: 638 --LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFI 695 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + + L + + L + Sbjct: 696 EVMPPAIYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREI 755 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 + L G + + L + ++ L E F Sbjct: 756 IVRSLGQGAPINRPIGRGEDAQPAP---LPKAHFRTTNEMLDEFAF 798 >gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1433 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEKWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDIGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057] Length = 1462 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F Y +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGYPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR] gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens JR] Length = 994 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 62/467 (13%), Positives = 128/467 (27%), Gaps = 63/467 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N FV D ET G + A + A VR + +E+ + + + +T Sbjct: 3 KNTFVAVDIETTGLNPADSEIIEVAAVRF-AEGRVLETFQSL---VKPEKKIPLKIQQLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI AE + + +F ++ IIG+N + + + Sbjct: 59 GINESMVADAPAC-AEVTGMLAEFV--HDSIIIGHNI-----------GFDLNFLQHYHP 104 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 +D L + R ++ + ++L +L A I+ + + H A D Sbjct: 105 VFIRARYYDTLPLARLVWPKAHG-------------YRLANLVEALKIQLNGSPHRAFHD 151 Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 A + L E E L + + + + G A + + Sbjct: 152 ALAAKEVFCLALEVLRGLGTENLLRMLEIIGAKSDWPYYEIISALALQGAGQAKKGYSYP 211 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 + + + + + V + L S ++L + Sbjct: 212 FLAGLLEGKKEFASLF-----PNADSAENSPVDAQEELGLSEEDLSAFFGPEGRLGK--- 263 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 +MP + + + ++ T + Y + S Sbjct: 264 ---VMPNYQYRPQQVQMLKEILHCFKSGLYAVIEAGTGTGKSLAYLLPALYWNKSTGAKV 320 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + ++ I + +N R L R Sbjct: 321 VVSTHTINLQEQLWNQDIPNLERVIGAKINAALVKGRTNYLCLR---------------- 364 Query: 419 DWLEHRKKM-LTRSRIEEYKNKLQ-SLSGEYKGDEGKEGLINALYEY 463 W + K + R + ++ L+ GD+ + L EY Sbjct: 365 KWEQRIKDRDWSGDREINFYLRILVWLNETATGDKTEINLQGEEQEY 411 >gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] Length = 1435 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + L ++ ++ L++ Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 630 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 748 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 749 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 798 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 799 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856 >gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] Length = 1433 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + L ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1433 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis CT-43] Length = 1433 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1435 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + L ++ ++ L++ Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 630 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 748 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 749 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 798 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 799 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856 >gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47368] Length = 1463 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I + + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFINKAEETVAEL 843 >gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41301] Length = 1463 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17545] Length = 1463 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] Length = 1463 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] Length = 1457 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 28/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G + DR + VR+ R E E ++F P +TGIT Sbjct: 443 FVAFDLETTGLNRENDRITEIGAVRI-RNGEIGERFDLF---VNPHKPIPPRITELTGIT 498 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + QFF+ ++ +N FD + R R + Sbjct: 499 DDMVKDA----AEEDEALRQFFAFCGDAVLVAHNAEFDTGFCRAAAARCGMEFPYT---- 550 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + R + G ++KL +A + N H A D + Sbjct: 551 ---YMDSIPLCRTV-------------LPGLKNYKLDTVAGGLHLPPFNHHRASDDAFVL 594 Query: 185 LALV 188 ++ Sbjct: 595 GQIL 598 >gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] Length = 1463 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187] gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH187] gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] Length = 1433 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + + + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLNPEDAMY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] Length = 1433 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F S + +N FD + F + D Sbjct: 472 ITDDMLTDAP----EVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P + ++ L F + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VYFRTTNEMLDCFSF--LGEEKAKEIVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North America USA6153] gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] Length = 1433 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames] gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne] gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L] gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066] gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055] gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum] gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94] gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI] gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Ames] gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. 'Ames Ancestor'] gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Sterne] gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis str. CI] Length = 1433 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1433 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B] gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] Length = 1433 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINIGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14] gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19F] gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Taiwan19F-14] Length = 1463 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41317] Length = 1463 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 59/449 (13%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLDRLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y ++V ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEVYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 1492 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 73/480 (15%), Positives = 127/480 (26%), Gaps = 52/480 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G A DR + V++ ++ F + E +T Sbjct: 461 DTFVVFDIETTGFSAAEDRIIEIGAVKI-TDGAIVDRFSTF---VNPEVPIPFEIQQLTH 516 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT L +E E F + +N FD + R Sbjct: 517 ITDDMVLEAPKIE-EALPAFLDFV---GESALVAHNAGFDVGFIEQNCVRLGR------- 565 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + R + +KL +A A I N H A D Sbjct: 566 SRTFTSVDTVGLARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAA 612 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIA 241 AT + E + N I+ M + R N + Sbjct: 613 ATAEIYVKFIEMLKERGMTTLKEVNAFGDMNPDAIKKMPTYHAIILAKNEVGRVNLYTLV 672 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300 + H +Y S + + L + L G I K V Sbjct: 673 SL-SHLKYFSRRPRIPKSEFNKYREGLILGSACEAGELYRALLDGKSEETIAKIVDYYDY 731 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + K + N R + ++ DV Sbjct: 732 LEIQPIGNNAFMIASEKQRNIKS-----EEDLKNMNRRIVQLGEKFQKPVVATCDVHFMD 786 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 D + + L L ++ L E Y + Sbjct: 787 PDSEVYRRIIMTGKGF--SDADSQPPLYLRTTEEMLEEFS--YLGSKKAEEVVITNTNKI 842 Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + + ++ IE+ L+++ + G+E E ++ L L +I Sbjct: 843 ADSI-ERISPVRPDKCPPVIEDSDQTLRNICYDKAHSMYGEELPEIVVERLERELNSIIS 901 >gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] Length = 1432 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 62/481 (12%), Positives = 136/481 (28%), Gaps = 55/481 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ FV++D ET G D+ + V+V + +E ++ + + + Sbjct: 414 LSQTFVVFDLETTGFSNKNDKITEIGAVKV-KNFEIVDRFNEL---INPEKDISYKVQEL 469 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E E + +F ++ +N FD + + Sbjct: 470 TGITNDLIKDKPTIE-EILPKFMEFV---GDSVLVAHNAEFDIGFINQKCKEMNIEF--- 522 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D L + R FKL +L G+ N H A D Sbjct: 523 ----KNKSVDTLMLARI-------------LLPHLKRFKLNNLTKELGVPLHNHHRAVDD 565 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + + K N+ + ++ ++ ++ Sbjct: 566 AAATAQIFIKFLDMLQKKGAKKLSDVNEVLGGIDYTKLKTKHITLIAQNLVGVKNLYKIV 625 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT--SHDELKGLVPVPIKEVHLN 298 + + Y+ I ++ + + + S A +F ++ + I Sbjct: 626 SDAHVNHFYRAPRILKSVLLEHKEGIIVGSACEAGEVFQAVKQNKNDDEIKEIIDLYDYI 685 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + + + + + + + + + ++ + + Sbjct: 686 EVMPIDNNRFMIRNGEVKDEDELRDLNRRMIEIAKKFGKIPVATGDVHFIDKHEAVFRRV 745 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 Y F+ D + T D L E F+Y + + + Sbjct: 746 LKYSQGFSLDDEETYLHFRTT-------------DEMLEE--FKYLGEELAYEVVVENTN 790 Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + L IE +L+ + + GD E + L L +I Sbjct: 791 KVADMVEDFLPIPNETFPPVIEGSDTELREMCYNKAKRIYGDPMPEVVKKRLDRELNSII 850 Query: 469 P 469 Sbjct: 851 S 851 >gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] Length = 1433 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V++ + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGL------A 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + ++ L + D+ + +D +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDA---MY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1475 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 78/470 (16%), Positives = 143/470 (30%), Gaps = 45/470 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G D + VR R E ++S + F PE +T IT Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRC-RGGEIVDSFQSF---VRPTKPVPPEVQKLTNIT 509 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P E + + FF I+ +N +FD + R + + + Sbjct: 510 PDMLEGAP----EAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFAN---- 561 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + RA+ S L L + V+ H A AD Sbjct: 562 --PVLDTLTLARAV-------------LPHMRSHSLAALTKELQVPLVDHHRADADAKTA 606 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ + E+ + R L K I+++ + P + + Sbjct: 607 AMVLMKLLERAEGVETVADLNR----LTKGINVEQLRPYHTTVLVKTQAGMKNLYKLISL 662 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL-NKCPIL 303 H Y + S + + L ++G+ ++++ + Sbjct: 663 SHIEYFNRTPRVPRSELEKHREGLLVGSSTYGGQLFDALIRGVPDEELEQMASWYDYLEI 722 Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 +P D ++ L N + L A+ + + Q V ++ Sbjct: 723 LPRDCLAFLLESGQVNSEEQLLSLNRRIYELGKKLGKPVCAVSDAHFLDPHQQVFRRILK 782 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 D LRT E L L E P+ ++ + ++ ++ Sbjct: 783 HGIGFRDEYDRPFYLRTTQEMLDEFAY------LGEQAAYEVVVENPNAIAAQIEK--VK 834 Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 L +E + + LS E GD E + + L + L +I Sbjct: 835 VVPDKLHPPVLEGSVEETRRLSWEKVKRVYGDPVPEKIAHRLEKELNAII 884 >gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104] Length = 1463 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200] gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] Length = 1463 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] Length = 934 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 28/209 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+N +V+ D ET G D+ QFA V V + I+ Sbjct: 1 MSNKYVVVDLETTGNSAKKGDKIIQFAAV-VMEGGKIIDQYSSL---LNPGKEIPAFIEE 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG+ V AE + ++ + +N+ FD + + + + Sbjct: 57 LTGLNDSMVSDAPV-FAEIAPKVMELLED---AYFVAHNVLFDLSFLQEELLDAGFPGFY 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R + S S+KL DL+ GI H H A + Sbjct: 113 ------GPVIDTVELARTVLPCSD-------------SYKLSDLSAKEGIMHDRPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208 D YAT L+ + E+ +L K Sbjct: 154 DAYATAKLLHIFLERLEELPLTTIKQLLK 182 >gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1492 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 73/480 (15%), Positives = 127/480 (26%), Gaps = 52/480 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G A DR + V++ ++ F + E +T Sbjct: 461 DTFVVFDIETTGFSAAEDRIIEIGAVKI-TDGAIVDRFSTF---VNPEVPIPFEIQQLTH 516 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT L +E E F + +N FD + R Sbjct: 517 ITDDMVLEAPKIE-EALPAFLDFV---GESALVAHNAGFDVGFIEQNCVRLGR------- 565 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + R + +KL +A A I N H A D Sbjct: 566 SRTFTSVDTVGLARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAA 612 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIA 241 AT + E + N I+ M + R N + Sbjct: 613 ATAEIYVKFIEMLKERGMTTLKEVNAFGDMNPDAIKKMPTYHAIILAKNEVGRVNLYTLV 672 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300 + H +Y S + + L + L G I K V Sbjct: 673 SL-SHLKYFARRPRIPKSEFNKYREGLILGSACEAGELYRALLDGKSEETIAKIVDYYDY 731 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + K + N R + ++ DV Sbjct: 732 LEIQPIGNNAFMIASEKQRNIKS-----EEDLKNMNRRIVQLGEKFQKPVVATCDVHFMD 786 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 D + + L L ++ L E Y + Sbjct: 787 PDSEVYRRIIMTGKGF--SDADSQPPLYLRTTEEMLEEFS--YLGSKKAEEVVITNTNKI 842 Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + + ++ IE+ L+++ + G+E E ++ L L +I Sbjct: 843 ADSI-ERISPVRPDKCPPVIEDSDQTLRNICYDKAHSMYGEELPEIVVERLERELNSIIS 901 >gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] Length = 1435 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V++ + E I+ E F + +TG Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGL------A 523 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 630 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + ++ L + D+ + +D +Y Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDA---MY 745 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 746 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKVA 799 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 800 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856 >gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] Length = 1433 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E +F + +N FD + F + + Sbjct: 472 ITDDMLIDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271] gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271] Length = 1433 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] Length = 1438 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 51/444 (11%), Positives = 118/444 (26%), Gaps = 42/444 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + ++ + A V++ + ++I F +T I Sbjct: 420 TYVVFDIETTGLSITANKIIELAAVKM-HEGKEIGRYATF---VNPHERIPYHIQQLTNI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E + +F ++ +N RFD + + D+ + Sbjct: 476 NDDMVKDAP----ELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPY- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R ++ G + +L LA + + H A D A Sbjct: 531 -----LDTLELARLVH-------------PGLKNHRLNTLADKYKVLLESHHRAIDDTIA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 ++ + K R + + + + ++ LI+ Sbjct: 573 LAGILNGLLSDVDKTKGVKMLDRLNDYVGTDLSNTRPFHCGIYALNMTGKKNLYKLISM- 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + L + ++ L + + Sbjct: 632 -SHTEYFKRVPCIPKSKLQEMRDGLLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEI 690 Query: 304 MPIDYCKKEHFERWGIDHKRCL-ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P+ + + ++R L A N Y + + Sbjct: 691 QPLTMYMHLVDKGLVGSPEEIKTAISKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDW 420 + + ++ L E F + T + + + Sbjct: 751 HGITG--------FSPLKDMRKPDAHFRTTEEMLQEFEFLGQDKCYEVVVTNTSELADRF 802 Query: 421 L--EHRKKMLTRSRIEEYKNKLQS 442 E L ++ ++++ Sbjct: 803 EELELFPDKLFTPILDGADEEIRN 826 >gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] Length = 1463 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAEYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDLEELQTIIKSLIEVGDRLGKHVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1433 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 69/477 (14%), Positives = 140/477 (29%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + ++ L + D+ + +D +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGGTLDKPVVATGNVHYLDPEDA---MY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059] Length = 1462 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 911 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 43/401 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G ++ + V+V E E F + +T Sbjct: 479 DTYVVFDLETTGFSPDKNKIIEIGAVKV-VHGEITERFSTF---VNPEVPIPYRIEELTS 534 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +E + QF I+ +N FD + R + Sbjct: 535 IRDDMVIDAPKIE----TILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 584 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + ++D + P + FKL +A A G+ N H A D Sbjct: 585 ----KEFTIIDTVALARILLPQLNR----------FKLDTVAKALGVSLENHHRAVDDAG 630 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG--ASRSNTALI 240 T + + D N+ I M + + LI Sbjct: 631 CTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIMKMNTYHAIILATNDIGRINLYRLI 690 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298 + K I + R L S A L+ + + + +K Sbjct: 691 SLSHLTYYNKRPRIPKSEFVKYREGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYDYL 750 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + L ++ K E + N +++ A + + ++ Sbjct: 751 EIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYR 810 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ + + L L ++ L E Sbjct: 811 RIIMAGKGFK-----------DADDQAPLYLRTTEEMLKEF 840 >gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] Length = 186 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 27/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F +D ET G +R + +R D+ I ++ P A I IT Sbjct: 23 FTAFDTETTGLKPEYERLIEIGAIRFDKNG-IIARYDIL---INPGKPIPPGASAINNIT 78 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++E + F + ++ +N FD + R+ + Sbjct: 79 DDMVRNCPLIE----SVLPDFLTFVRDSVLVAHNAGFDLSFVNKELERSGF------NPL 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D + + R SR + KLQ LA GI+ NAH A+ D Sbjct: 129 KNNAADTVHLAR-------------SRFPQLPNHKLQSLAAYFGIDVRNAHRAEDDARVC 175 Query: 185 LALVWLI 191 + + Sbjct: 176 MEVFLRC 182 >gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273] gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273] Length = 1433 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V++ + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGIIVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + + D + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLEKPVVATGNVHYLDPEDAMY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKVA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160] Length = 1462 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + + D + + L + + L + + Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + P L + ++ L E F + P+ Sbjct: 756 RSLGQGAMINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQ 812 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L IE+ + + L Sbjct: 813 L--AETFEPVEVVKSDLYTPFIEKAEETVAEL 842 >gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr. CH1] gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus gordonii str. Challis substr. CH1] Length = 1462 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 119/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKYGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] Length = 1503 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 55/403 (13%), Positives = 107/403 (26%), Gaps = 46/403 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G D+ + V+V + +E F E +T Sbjct: 465 DTYIVFDIETTGFSAIKDKIIEIGAVKV-KDGAIVEKFSTF---VNPKRPIPFEITQLTS 520 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + L +E + +F ++ +N FD + + Sbjct: 521 ITDEMVLDAPDIE----SVLPEFLEFVGDGVLVAHNAGFDVGFIEQNCR----------Y 566 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D + P + +KL +A A GI N H A D Sbjct: 567 QEIEPDFVSVDTVALARVLLPTLSK----------YKLNIVAKALGISLENHHRAVDDAG 616 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E N+ + I+ + P H+ + L Sbjct: 617 ATAEIFVKFVEMLKDRNITTLKEMNRFGDMNVNAIRKL-PTHHIIILVKNDIGRFNLYQL 675 Query: 243 V-AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHL 297 + A H Y S + + L + L P + + Sbjct: 676 ISASHLTYFARRPRIPKSLLNQHREGLIIGSACEAGELYQAILNQKSPQAVARLAEFYDY 735 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 + L + + N ++ + A + + +V Sbjct: 736 YEIQPLGNNQFMIDSDRYGDINSKEDLQNINREIVSLGEKFKKPVVATCDVHFLDPEDEV 795 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ + L L +D L E Sbjct: 796 YRRIIMAGKGFG-----------DADTQPPLYLRTTDEMLEEF 827 >gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] Length = 1430 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 140/474 (29%), Gaps = 42/474 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + +V++D ET G D + D + V++ + E I F + + I Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKL-KGTEVIGEFSSF---VKPERNLSEKVTRI 470 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ ++ +E + +F ++ +N FD + RN + + + ++ Sbjct: 471 TGISDRELEDAP-SLSEVLPKFLEF---CKDSVLVAHNATFDYRFVRNAVKQLYNEDWKL 526 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + S + S D+ KL D H A D Sbjct: 527 PYIDTLAL-----------SKSLLKSKSYSLDNVVKRLKLGDF---------EHHRASED 566 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + + K LRK I+I ++ PL + Sbjct: 567 ARITAEVFKKLLSMAKKRGIK--KIAELENLRKHINISSLRPLHVTILAKNKTGLRNLYE 624 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNK 299 H +Y S + + L S L G ++E+ Sbjct: 625 LVTLSHTKYFYKKPRIPKSILLEKREGLIIGSACISGELSKAYLSGANAAELEEIAKFFD 684 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +MP+D E R L + + + Sbjct: 685 FIEIMPLDVLDYNEAEAHITRENLKNMYREFYRIGKKLNIPVVMTGDVHFLEPEDAIYRA 744 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLP-FSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + + + + E++ F D E+ + +N Sbjct: 745 VLEAAQEYQNFDKQPSLYLRTTEEMLEAAKEIFEDE---EIAYEVVVKNSRKI---ALMV 798 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + L IE +++ L + E GD E + L + L+ +I Sbjct: 799 ENIAPIRGKLHPPIIEGADEQVRELTYKTAHEIYGDPLPEIVEKRLEKELRAII 852 >gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803] gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803] Length = 1433 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P ++ +D L F + + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6] gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39] gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6] gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae D39] Length = 1463 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVSRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] Length = 1010 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 26/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D + + V+V + P A + GIT Sbjct: 25 YVVFDLETTGISSKYDEVIEISAVKV-EAGQVTGEFSTL---VNPGRKIPPAASRVNGIT 80 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +E F + ++G+N FD + + Sbjct: 81 DKMVAGA-LPFSEVLGDFFAF--AGDFVLVGHNINSFDMKF---------LYRDAKKYFR 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D + A P+ +L DLA GI AH A D + Sbjct: 129 KVPDNDYVDTLLLARAALPELSH----------HRLVDLAEHYGISAKGAHRALNDCHMN 178 Query: 185 LALV 188 + Sbjct: 179 QKVY 182 >gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408] Length = 1462 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 57/451 (12%), Positives = 117/451 (25%), Gaps = 42/451 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHTL 412 P L + ++ L E F P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF--LGEELAKKLVITNPNQL 813 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 --AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547] gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus sedentarius DSM 20547] Length = 584 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G A +F V+V R E + + +PA P +TGI Sbjct: 26 TFVVFDLETTGTSSADSEITEFGAVKV-RGGEVVGEFQTL-VRPAAG--IPPYIQVLTGI 81 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + + F ++ +N RFD + R R + Sbjct: 82 TTAMVSAAPSIE----QVLPNFLEFVGDAVLVAHNARFDTAFVRRACERTGRPAP----- 132 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GN D + + R + + KL LA E +H A D A Sbjct: 133 -GNPVLDTVHLARQL-----------LPRPEVPNHKLSTLAAYFRAETTPSHRALDDARA 180 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + + Sbjct: 181 TVDVLHGLIERVGPLGVHSLE 201 >gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] Length = 1463 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVSRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1] Length = 1462 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 57/451 (12%), Positives = 117/451 (25%), Gaps = 42/451 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHTL 412 P L + ++ L E F P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF--LGEELAKKLVITNPNQL 813 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 --AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus prevotii ACS-065-V-Col13] Length = 1369 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 76/248 (30%), Gaps = 28/248 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G DR + V+V + E + + + ITGI Sbjct: 352 SFVVFDLETTGLSKYKDRITEIGAVKV-ENGKITEEYNQL---VNPEMVISEKITDITGI 407 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ E + F I+ N FD + + +R + Sbjct: 408 TNEMVEDCPKID-EVMK---DFLKFCGDSILVGQNTDFDVGFIKENCFRMEIEFNPL--- 460 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD + A D + F L +A I N H A D A Sbjct: 461 -------YLDTLPMARALFSDMKK----------FSLDKIARKLEIPAFNHHRASDDARA 503 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + ++ K+ NK + + + + ++ LI+ Sbjct: 504 TAQIFIKMFDRIMKMNGISLSNINKLKSYRPKAKHEYFSVTVYAKNKTGLKNLYKLISES 563 Query: 244 AWHPRYKD 251 + + Sbjct: 564 RMNHFNNE 571 >gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405] gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678] gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058] Length = 1462 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 57/451 (12%), Positives = 117/451 (25%), Gaps = 42/451 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHTL 412 P L + ++ L E F P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF--LGEELAKKLVITNPNQL 813 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 --AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] Length = 1445 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 56/396 (14%), Positives = 112/396 (28%), Gaps = 40/396 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G A +R + V++ R E ++ F + P+ +TGIT Sbjct: 427 IVFDLETTGLSAATERITEIGAVKL-RNGEIVDRFNTF---VNPERSIPPKITELTGITD 482 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E E R+ + F ++ ++ +N FD + R R + Sbjct: 483 DDVRGAPL-EGEALRQFYAFCG-GSSAVLIAHNAPFDTSFLRQCARRCGMEYN------- 533 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D + + P+ + KL +A G+ N H A D Sbjct: 534 ---FTAIDTVVLSRSLFPELKK----------HKLDIVAKHLGLGEFNHHRACDDAEMLA 580 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 + + E + L + ++ T + N + + Sbjct: 581 RIYIRMMELMQSERACSDIGQINTSLAAVDVKKSPTYHQIILVKNLTGLKNLYRLISI-S 639 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCPILM 304 H Y S + + L + ++G + Sbjct: 640 HLDYYAKRPRIPKSKLIEHREGLLIGSACEAGQLYRAIVEGKSWGDLCDIARFYDYLEIQ 699 Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P+ + D + E N T++R L A + + + Sbjct: 700 PVANNEYMVRSNMVADEQAIREFNETVVRLGERLNIPVVATCDVHFMDPGDAKFRAILMA 759 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 +Q + L +D L E Sbjct: 760 GMGF-----------ADADQQAPLYFRTTDEMLKEF 784 >gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] Length = 219 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 26/193 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G +D + + V+V + ++ +A + GIT Sbjct: 15 YTVFDLETTGISANMDDIIEISAVKV-KGGIVQDTFSTL---VNPGRHIPAQATKVNGIT 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q ++ E +F ++G+N FD + F ++ Sbjct: 71 DQMVSEAPLI-REAMTEFLRFVGED--ILVGHNIQSFDMKFIYREVEELFQETVSN---- 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D + P+ +L DLA GI AH A D Sbjct: 124 -----DFIDTLYMARKCLPELKH----------HRLTDLAEHFGISSKGAHRALNDCVMN 168 Query: 185 LALVWLIREKKPK 197 + + + K Sbjct: 169 QKCFEEMAKLQKK 181 >gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 605 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + V+V R E++ P +TGI Sbjct: 43 TFVVVDLETTGGSPADSAITEVGAVKV-RGGERLGEFATL---VDPGVPIPPFITALTGI 98 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q S + F C++ +N FD + R + + Sbjct: 99 TQQMVTNAPP----MSAVLPAFLEFARGCVLVAHNAPFDIGFLRAACTAHDHPWPA---- 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D D+ R + + + KL LA H A AD A Sbjct: 151 --FPVVDTADLARRV-----------LTREEVPNCKLATLARYFRTGTEPCHRALADARA 197 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + + Sbjct: 198 TVDVLHGLIERLGSYGVHSLE 218 >gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] Length = 957 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G A D Q V +D + ++ F P +TGI Sbjct: 2 KFAVLDLETTG-HQAEDEMIQIGIVMLDEELNVTDTFSSF---VRPATDIPPFITQLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + VE + + + ++ +N+ FD ++ R Y + Sbjct: 58 TNEMVADAPSVE-DVLTDVVKLL---GDAVLVAHNVGFDAHFMNRALDRCGYSPF----- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D +D++R +Y S++L ++ A GI H H A +D A Sbjct: 109 -TGRRLDTIDLLRMLY-------------PTLPSYQLGAVSEAFGITHERKHQADSDAEA 154 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L K L Sbjct: 155 TAMLFAHCVHKLRDLPLLSLQ 175 >gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] Length = 1498 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 49/404 (12%), Positives = 113/404 (27%), Gaps = 48/404 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G D+ + V+V E ++ F + +T Sbjct: 459 DTYIVFDLETTGFSAIKDKIIEIGAVKV-VNGEIVDRFSTF---VNPKRPIPFQITQLTS 514 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +E + QF ++ +N FD + + Sbjct: 515 ITDEMVMGYPDIE----TILPQFLEFAKDGVLVAHNAGFDVGFIEQNCR----------Y 560 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +D + P + +KL +A A GI N H A D Sbjct: 561 QDIEPHFVYVDTVAMARVLLPTLSK----------YKLNVVAKALGISLENHHRAVDDAA 610 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + + + N+ I+ + P H+ + L Sbjct: 611 ATSEIFVKFVQMLKEQNITTLKEMNRFGDMNPNAIRKL-PTYHIIILIKNDIGRYNLYQL 669 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEV 295 + H Y S + L ++ +L + + + + + + Sbjct: 670 ITQSHLTYYARRPRIPKSVLNEYREGLIVGSACEAGELYQAILNNKS-AESIARLADFYD 728 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P+ + + N ++ + + + + Sbjct: 729 YYEIQPLGNNRFMMVSDKYPDINTKEDLEEINRKIVELGEKFKKPVVGTCDVHFLDPEDE 788 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 V ++ + ++ L L ++ L E Sbjct: 789 VYRRIIMAGKGF-----------SDADEQPPLYLRTTEEMLEEF 821 >gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] Length = 1463 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L +++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFVDKAEETVAEL 843 >gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] Length = 1433 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F S + +N FD + F + D Sbjct: 472 ITDDMLTDAP----EVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P + ++ L F + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VYFRTTNEMLDCFSF--LGEEKAKEIVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] Length = 1463 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVSRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGRPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] Length = 1464 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 58/451 (12%), Positives = 124/451 (27%), Gaps = 44/451 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + + F ++ +N FD + + R+ Sbjct: 481 TDNHVRNAKPIE-QVLQMFQDF---CKDTVLVAHNATFDVGFMNANYKRHGMP------T 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y L L + + H A D A Sbjct: 531 ITQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + + D K + ++ L++ Sbjct: 578 TGRLLFIFLKEARENHGLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V + + L L V ++ Sbjct: 638 --LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLTSGVDKAVEVAKYYDFI 695 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + + L + L + Sbjct: 696 EVMPPAIYAPLLAQGTIKDEEGIRQVIRDLIEVGRRLNKPVLATGNVHYIEPEDEIYREI 755 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNF--PHT 411 + L G + + L + ++ L E F A +T Sbjct: 756 IVRSLGQGAPINRPIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDVAYEIVVKNT 812 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQS 442 E+ + +E KK L +E+ + ++ Sbjct: 813 NDFAERFEEIEVVKKDLYTPFLEKSEERVAE 843 >gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] Length = 1463 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGL------SK 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQIGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + + + L + V ++ + Sbjct: 637 LSNTKYFEGAPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNAL-- 814 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 815 AETFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115] Length = 1462 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 120/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGERLGKLVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414 P L + ++ L E F + A+ P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGKDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16] gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16] Length = 1430 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 71/479 (14%), Positives = 143/479 (29%), Gaps = 50/479 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +V++D ET G + + A V++ + E I++ E F + + Sbjct: 412 LEEEYVVFDVETTGLSAVYNTIIELAAVKI-KNGEIIDTYESFA---DPKEPLSATIIEL 467 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT AE ++ +F + +N FD + + + + Sbjct: 468 TGITDDMVQGAPEP-AEVLKQFREF---AGNATLVAHNASFDIGFLNVGYKKLGFSEV-- 521 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D L++ R +Y + +L L IE V+ H A D Sbjct: 522 ----TNPVIDTLELGRFLY-------------PELKNHRLNTLCKKFDIELVSHHRAIYD 564 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT L+W + + + +D N + + Q + ++ L+ Sbjct: 565 TQATAYLLWKMVKDAAEKEIVYHDELNNHMGQGNFHRQRPFHCTLLVTSQTGLKNLYQLV 624 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + H Y S + + L + ++ K Sbjct: 625 SM--SHVDYYFRTPRIPRSQLNKHREGLLIGSACDKGEVFEGMMQKSADEVEKIAGFYDF 682 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P+ D E + ++ L A N Y + + + Sbjct: 683 LEIQPLGNYGHLIERELVKDKTALQEIVGNIVALGERLGLPVVATGNVHYLNEEDAIYRK 742 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH----TLSEK 415 + + ++L ++ + L E F T S Sbjct: 743 ILIASQGGAN--------PLNKQKLPDVHFRTTTEMLEEFSF--LGAEQAEKVVVTASND 792 Query: 416 EKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + L +IE ++++++S E GD E + L + L+ +I Sbjct: 793 IAAQVGDVHPIPDDLYAPKIEGADDEIRNMSYERAKMIYGDPLPEIVEARLQKELKSII 851 >gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] Length = 1462 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + + D + + L + + L + + Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGNRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + P L + ++ L E F + P+ Sbjct: 756 RSLGQGAMINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQ 812 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L IE+ + + L Sbjct: 813 L--AETFEPVEVVKGDLYTPFIEKAEETVAEL 842 >gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] Length = 1434 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 138/475 (29%), Gaps = 51/475 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + + + A V++ + E I+ P+ ITGIT Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKM-KGAEIIDQWTEL---IDPQLQIGPKTTEITGIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + + F I+ +N FD + R + + + Sbjct: 477 NEMLRGQ-----ETLDVVLRKFKDFTGDAILVAHNAEFDKAFINACAKRIGMEPWTNPF- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R +Y G +++L LA +E +NAH A D A Sbjct: 531 -----LDTLPLARLMY-------------KGMRNYRLGSLAKKFNVELINAHRALDDTVA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + + + + N+ + D ++ P + Sbjct: 573 LAHVFQQMLKDIKEAEIKSLAELNEKSNEE-ADYKSGRPFHATILVQNKEGLKNLYKLVS 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302 H S + + L K L+G P +KEV Sbjct: 632 RSHVETFFRWPRIQRSQLSKYREGLLIGTACKDGELMQSILRGKSPEELKEVAAFYDFIE 691 Query: 303 LMPIDYCKKEHFERWGIDHKRCL-ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + PI + + + +++ L A + + + ++ ++ Sbjct: 692 VQPISHYSPLLRNEEIPSLETMKGYHEKIVQMGKELGKLVVATGDVHFLNPQDEIFRDVF 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQD 419 D L +D L F A+ T + Sbjct: 752 LLSKGDPTAG-----------NQPPLYFHTTDEMLEAFSFLGEEIAKEIVVTNTNAIADM 800 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + L IE ++L+ + + GD E + + L + L +I Sbjct: 801 IEDISPIPDKLYTPIIEGADDELRQMCYDKARLLYGDPLPELVEHRLEKELNSII 855 >gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] Length = 1449 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V++ + E ++S F + +T Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ E + +F ++ +N FD + + Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + + R +Y KL +A GI N H A D Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584 Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ +K + + N+ L + + + + N + Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300 +A H Y S + L + L+G +KE+ Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + D + E N + + A + + + +V + Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + L ++ + E F Y + + Q Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + +IE + ++++++ G+ E + L + L +I Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870 >gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] Length = 1513 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 58/399 (14%), Positives = 102/399 (25%), Gaps = 38/399 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V+V E + F + +T Sbjct: 468 DTYVVFDLETTGFSPIKDKIIEIGAVKV-EHGEITDKFSTF---VNPKVPIPFQITQLTS 523 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT Q + +E + QF + +N FD + + Sbjct: 524 ITDQMVIGAPDIE----TVLPQFLEFIGDAALVAHNASFDVSFIEQNCR----------Y 569 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +D + P + +KL +A A I N H A D Sbjct: 570 QDIQPDFTSVDTVAMARILLPTLSK----------YKLNVVANALHISLENHHRAVDDAG 619 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E Y N+ D P HV + L Sbjct: 620 ATAEIFVKFVEMLKDRGIYDLAKLNQFG-ENNADAVRKLPSYHVIILALNEVGRVNLYTL 678 Query: 243 V-AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300 + H +Y S + + L + L I K + Sbjct: 679 ISMSHLKYYARRPRIPKSELSKYREGLLVGSACEAGELYQAILNDKSEERIAKIANFYDY 738 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + P+ + E I + E+L + ++ Sbjct: 739 LEIQPLGNN-QFMIESPKITKVQNEEDLKEINRKIVALGERFNKPVVGTCDVHFMNPEDE 797 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + L L +D L E Sbjct: 798 VYRRIIMAGKGFG------DADNQPPLYLRTTDEMLEEF 830 >gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] Length = 1433 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V++ + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGL------A 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + ++ L + D+ + +D +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDA---MY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKVA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] Length = 1462 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------Q 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGERLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150] Length = 1462 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353] Length = 1462 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 1443 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 63/486 (12%), Positives = 129/486 (26%), Gaps = 70/486 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + A V++ + + I++ E F + + +T I Sbjct: 428 TYIVFDVETTGFSNVYDTIIELAAVKI-KNGQVIDTFERFS---NPHRKLTAKIIELTHI 483 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ R H F ++ +N FD + + + Sbjct: 484 TDDMLVNAPE-LSDVIREFHDFIGDG---VVVAHNAAFDLGFLYVAYKNAGIE------- 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R +D + + G S L+ L IE H A D A Sbjct: 533 ---VRHPGIDTVELSRLV----------NPGQKSHNLKTLTKKYNIELTQHHRAIYDTEA 579 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L + ++ L N + + + P + Sbjct: 580 TGELFLHLLKQAADLGIKNLIEMN-DHVGGEEGYKQSRPSHCTVLAVDDAGLKNLFKLIS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H V S ++ Q L + + + Sbjct: 639 ISHTETFYRVPRIRRSDLQKLRQGLIVGSGCSNGELFETMMNKTQEEAERIAKFYDYLEV 698 Query: 304 MPIDYCKKEHF---ERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 MP + + +++ L A N Y + Q+ Sbjct: 699 MPKPVYSPLVDGGTVHDEWALEDIIRR--IVKLGKKLNLPVVATGNVHYLHETDAKFRQI 756 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 G + + L ++ +D L E L ++ Sbjct: 757 LVGSMGGANPLNRNP--------LPKVHFRTTDEMLKEF----------DFLGPDLAKEI 798 Query: 421 --------------LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYE 462 ++ K L +IE +++ +L+ E E L + + Sbjct: 799 VVTNTQRVADMIGHVKPIKDDLYTPKIEGSDDEVTNLTYEMAHSIYGENLPEIVQARIDK 858 Query: 463 YLQWVI 468 L+ ++ Sbjct: 859 ELKSIL 864 >gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10] gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10] Length = 1438 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 56/474 (11%), Positives = 127/474 (26%), Gaps = 46/474 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + ++ + A V++ + ++I F +T I Sbjct: 420 TYVVFDIETTGLSITANKIIELAAVKM-HEGKEIGRYATF---VNPHERIPYHIQQLTNI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E + +F ++ +N RFD + + D+ + Sbjct: 476 NDDMVKDAP----ELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPY- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R ++ G + +L LA + + H A D A Sbjct: 531 -----LDTLELARLVH-------------PGLKNHRLNTLADKYKVLLESHHRAIDDTIA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 ++ + K R + + + + ++ L++ Sbjct: 573 LAGILNGLLSDVDKTKGVKMLDRLNDYVGMDLSNTRPFHCGIYALNMTGKKNLYKLVSM- 631 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y V S + L + ++ L + + Sbjct: 632 -SHTEYFKRVPCIPKSKLQEMRDGLLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEI 690 Query: 304 MPIDYCKKEHFERWGIDHKRCL-ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P+ + + ++R L A N Y + + Sbjct: 691 QPLTMYMHLVDKGLVGSPEEIKTAISKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDW 420 + + ++ L E F + T + + + Sbjct: 751 HGITG--------FSPLKDMRKPDAHFRTTEEMLQEFEFLGQDKCYEVVVTNTSELADRF 802 Query: 421 L--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468 E L +E ++++ + E L L + L+ +I Sbjct: 803 EDLELFPDKLFTPILEGADEEIRNTCYDTAKSIYGENLPEVVVARLEKELEPII 856 >gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] Length = 1464 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 104/401 (25%), Gaps = 30/401 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 425 TYVVFDVETTGLSAVNNDLIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E + F ++ +N FD + + R+ Sbjct: 481 TDNHVRNAKPIE-EVLQMFQNF---CQDTVLVAHNATFDVGFMNANYERHGMPII----- 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + +L + + + Sbjct: 578 TGRLLFIFLKEARENHSLANMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L V +K + Sbjct: 638 LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + + L + L A N Y ++ ++ Sbjct: 698 MPPVLYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREIIV 757 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L E F Sbjct: 758 RSLGQGAPINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAF 798 >gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987] gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus ATCC 10987] Length = 970 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 70/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ +++E K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKEVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAMY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124] gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens ATCC 13124] gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] Length = 1449 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V++ + E ++S F + +T Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ E + +F ++ +N FD + + Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + + R +Y KL +A GI N H A D Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584 Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ +K + + N+ L + + + + N + Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300 +A H Y S + L + L+G +KE+ Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + D + E N + + A + + + +V + Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + L ++ + E F Y + + Q Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + +IE + ++++++ G+ E + L + L +I Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870 >gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585] gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 70585] Length = 1463 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 58/448 (12%), Positives = 117/448 (26%), Gaps = 38/448 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + Q A ++ + I + F + +TGIT Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGIT 480 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +F ++ +N FD + + R+ Sbjct: 481 DDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------KI 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ R +Y L L G+ + H A D AT Sbjct: 531 SQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEAT 577 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+++ ++ + R L + + Sbjct: 578 GRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSL 637 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y + V + + L + V ++ +M Sbjct: 638 SNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVM 697 Query: 305 PIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + D + + L+ L A N Y +++ ++ Sbjct: 698 PPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVR 757 Query: 364 FFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEK 415 P L + ++ L E F R + L Sbjct: 758 SLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL--A 815 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 816 EIFEPVEVVKGDLYTPFIDKAEETVAEL 843 >gi|226490309|emb|CAQ42997.1| exonuclease [Escherichia coli K-12] Length = 89 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/83 (59%), Positives = 57/83 (68%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV IT Sbjct: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQ 84 GITPQ+A G EA F+ RIH Sbjct: 67 GITPQEARAKGENEAAFAARIHS 89 >gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] Length = 970 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 69/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAMY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854 >gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al Hakam] gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] Length = 972 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 69/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L L IE H A D Sbjct: 524 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 570 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 630 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAMY 745 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ +D L F + + Q Sbjct: 746 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 799 Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +S + G+E E + L + L+ +I Sbjct: 800 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856 >gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36] gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36] Length = 1462 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLPKII---- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 531 --QPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] Length = 223 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVF 59 + +V+ D ET G D D+ + + V ++ + P + P Sbjct: 22 PDTYVVVDLETTGLDPERDQIIEIGALEVTA-GKRGRTFSTLLQPRTPLEGQYVSPFITR 80 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + + +F + + N+ FD + + F Y Sbjct: 81 LTGITNEMLAAAPQP-RQALEAFGKFL---GSRVAVGYNVGFDMGFLQQQFQDQLYRPLA 136 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W D+L + + ++ +L +LA +E+ AH A + Sbjct: 137 NDW------VDVLPMAQTLFPLWDH-------------HRLNNLAAWYHVENKEAHRALS 177 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208 DV T ++E + + L D+ K Sbjct: 178 DVETTETCFRKLKEDAGRQYPSLEDFLEK 206 >gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630] gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42] gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255] gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile] Length = 1432 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 53/399 (13%), Positives = 120/399 (30%), Gaps = 39/399 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ FV++D ET G D+ + V++ ++ ++ + + + Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E E + +F ++ +N FD + Sbjct: 470 TGITNELIKDKPTIE-EVLPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + D L + R + +L +A GI +N H A D Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + + + N + + + ++ ++ +I Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSIGIKNLYKII 625 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + ++ I ++ + + + S A +F + + + K + L Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MPID + + D + E L D+ + + + Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFDKIPVATGDVHFLDKHEAVLRK 744 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + E+ + L+ +D L E Sbjct: 745 VLKYSQGFKVD----------EEETYLHFRTTDEMLEEF 773 >gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101] gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens SM101] Length = 1449 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V++ + E ++S F + +T Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ E + +F ++ +N FD + + Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GNSVLVAHNAAFDVGFIKKNLMDMGK------- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + + R +Y KL +A GI N H A D Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584 Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ +K + + N+ L + + + + N + Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300 +A H Y S + L + L+G +KE+ Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + D + E N + + A + + + +V + Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + L ++ + E F Y + + Q Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + +IE + ++++++ G+ E + L + L +I Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870 >gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087] Length = 1462 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKALNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIDPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] Length = 1449 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 138/480 (28%), Gaps = 55/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V++ + E ++S F + +T Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ E + +F ++ +N FD + + Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + + R +Y KL +A GI N H A D Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584 Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ +K + + N+ L + + + + N + Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300 +A H Y S + L + L+G +KE+ Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + D E N + + A + + + +V + Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + L ++ + E F Y + + Q Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + +IE + ++++++ G+ E + L + L +I Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870 >gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13] gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13] gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] Length = 1449 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V++ + E ++S F + +T Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ E + +F ++ +N FD + + Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GNSVLVAHNAAFDVGFIKKNLMDMGK------- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + + R +Y KL +A GI N H A D Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584 Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ +K + + N+ L + + + + N + Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300 +A H Y S + L + L+G +KE+ Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + D + E N + + A + + + +V + Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + L ++ + E F Y + + Q Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + +IE + ++++++ G+ E + L + L +I Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870 >gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1398 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 67/478 (14%), Positives = 137/478 (28%), Gaps = 54/478 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++D ET G D + ++V E +E + + +TGI Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKV-ENGEIVEEFSQL---INPERPIPEKIQKLTGI 436 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +E + F I+ +N FD + R N Sbjct: 437 TNEMVIDKPTI-SEVLPKFLDF---CKDSILVAHNSDFDTGFVREKASENNLPY------ 486 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D +D + PD + KL +A + N H A D A Sbjct: 487 ----DFDAIDTVILSRLLMPDL----------KNHKLNTIAKELNVSLENHHRAVDDATA 532 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + K + ++ N+ K ID + P+ V + Sbjct: 533 TAQIFLNFISKLKAMEIENFNEINEK--IKSIDTSKIRPVNAVILAKNQAGVKDLYKLVS 590 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H +Y SG + + L S + +K + + + Sbjct: 591 LAHTKYLY-------SGTPTIPKSEIKNHRENLLVGSGFYESDVFSAILKNKPVKEIESI 643 Query: 304 MPIDYC--KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + + + + N+ ++ + K +S + Sbjct: 644 IDFYDYIEINPVTTMNSMINDESVRNVEEIKNINKTIYQIATKMGKT-VIASSNSHYLDE 702 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 D + + +P+ L L +D L E Y + + + Sbjct: 703 DEKLFRKILKSSIKKRDESPDN--DLYLRTTDEMLQEFS--YLGEDVARKIVVENTNAIA 758 Query: 422 EHRKKML------TRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 +K++ IE +L+++ + D E + L + L +I Sbjct: 759 NTIEKVIPVPDGTFPPVIEGSDEELRNMCYEKAKRIYSDNLPEIVEKRLEKELNSIIN 816 >gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63] Length = 1432 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 54/400 (13%), Positives = 123/400 (30%), Gaps = 41/400 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ FV++D ET G D+ + V++ ++ ++ + + + Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E E + +F ++ +N FD + Sbjct: 470 TGITNELIKDKPTIE-EVLPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + D L + R + +L +A GI +N H A D Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + + + N + + + ++ ++ +I Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSVGIKNLYKII 625 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + ++ I ++ + + + S A +F + + + K + L Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +MPID + + D + E N L+ A + + + + + Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFNKIPVATGDVHFLDKHEAILRK 744 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + E+ + L+ +D L E Sbjct: 745 VLKYSQGFKVD-----------EEETYLHFRTTDEMLEEF 773 >gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] Length = 1490 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 64/483 (13%), Positives = 143/483 (29%), Gaps = 67/483 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G D+ + V++ ++ F P +T IT Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKM-LDGVVVDKFSEF---VDPKIPISPATTKLTTITD 515 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +++A + +F C++ +N+ FD + R Sbjct: 516 DMVIGAPLIDA----VVPKFVEFCGDCVLVGHNVGFDISFIIENCRRLGIK--------- 562 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D M AF P + L+ + + + H A +D T Sbjct: 563 -KEFTCIDTMGLSRAFYPQQAK----------HSLEAVCKTLKVVNEQHHRAISDAECTA 611 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244 + + + KL+E + + + +DI+ + L + A + Sbjct: 612 EIFKIF---QEKLYEKGIYDLDAIKAIEELDIEAVKRLHSNHVILIAKDTCGRTNLYTLI 668 Query: 245 --WHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEVH 296 H Y S ++ + L +L + + + + V + + Sbjct: 669 SKSHIDYYYRKPIIPKSELIKYREGLIVGSACCLGELYEAVREGRSDEEIAKIVDFYD-Y 727 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 L PI E E+ + N +++ + A + + + ++ Sbjct: 728 LEIQPIANNKFMIANEKMEKINSEEDLRDINRKIVKLGEHYNKPVVATCDVHFLNPEDEI 787 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 + + + E + L L ++ L E F Y + + Sbjct: 788 YRTIILS------------MKKMDKEDPAPLYLRTTEEMLQE--FEYLGEEKAREVVIEN 833 Query: 417 KQDWLEHRKKMLTRSRIEE---YKNKLQSLS--------GEYKGDEGKEGLINALYEYLQ 465 + + ++ R ++ L E GD + L + L+ Sbjct: 834 SNKIFDWC-EKISPVRPDKCPPVIENSDELLRKICYDKMHEMYGDPLPPIVEERLEKELK 892 Query: 466 WVI 468 +I Sbjct: 893 SII 895 >gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07] gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07] Length = 1432 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 54/400 (13%), Positives = 123/400 (30%), Gaps = 41/400 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ FV++D ET G D+ + V++ ++ ++ + + + Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E E + +F ++ +N FD + Sbjct: 470 TGITNELIKDKPTIE-EVLPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + D L + R + +L +A GI +N H A D Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + + + N + + + ++ ++ +I Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSVGIKNLYKII 625 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + ++ I ++ + + + S A +F + + + K + L Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +MPID + + D + E N L+ A + + + + + Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFNKIPVATGDVHFLDKHEAILRK 744 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + E+ + L+ +D L E Sbjct: 745 VLKYSQGFKVD-----------EEETYLHFRTTDEMLEEF 773 >gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1437 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 46/390 (11%), Positives = 104/390 (26%), Gaps = 31/390 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G DR + + V++ + IE + +L +T IT Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKM-QLGNVIEKFSEY---INPGFLLSEFTTKLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E +R + ++ +N+ FD + + R Sbjct: 475 DAMVANSD-TEENIIKRFRE---WSGNAVLVGHNVTFDVGFMNAAYTRYNQPII------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D L R +Y S++L +A I AH A D T Sbjct: 525 TNAIIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDAETT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + W + ++ + + +++ + ++ P+ + A+ Sbjct: 572 GHIAWRLIKEAQERYNLNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYKLVSR 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + V S + + L ++ + K+ + Sbjct: 632 SNIEFFARVPRIPRSILEQYREGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYYDFIEIQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + ++ L + + + + ++ Sbjct: 692 PTANYQPMIESGLIATEEKLQSILKDIVAIGDKLKKPVVVTEDVKYTNP----EDKIYRN 747 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDR 394 + + P+ D Sbjct: 748 ILIATQPGNPQNRTALPDLNFKTTQELLDD 777 >gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311] gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG 18311] Length = 1464 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 56/446 (12%), Positives = 117/446 (26%), Gaps = 34/446 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F Y +TGI Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGYPLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CKGAVLVAHNATFDVGFMNANYERHQLP------T 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + +L + + + Sbjct: 578 TGRLLFIFIKDVFEKHGLTNLEQLNTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V + + L + ++ + Sbjct: 638 LSNVSYFEGVARIPRKVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + D + + + L + N D+ + + +D + Sbjct: 698 MPPAIYAPLIAKDLIKDEEAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757 Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 I I P L + ++ L E F + A ++ Sbjct: 758 RALGQGAMINRPIGKGENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMAN 817 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E KK L I+ + ++ Sbjct: 818 QIEEVEVVKKDLYTPYIDRAEEQVAE 843 >gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49] Length = 1462 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYESLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L IE+ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIEKAEETVAEL 842 >gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] Length = 560 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 24/190 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + A + V+ R E I + +P + P +TGI Sbjct: 14 TFTVVDLETTGANSAQGDITEIGAVK-SRGGEIIGEFQTL-VRPTRS-VISPFVERLTGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + I F + I+ +N FD + + R Y + Sbjct: 71 TNSMVATAP----ELASVIPMFLEFAHGSILVAHNAGFDVGFLKEACARLDYPWPGYE-- 124 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D +R + KL LA + H A D A Sbjct: 125 -------VVDTVRLARLC--------VTRQEVRNHKLGTLATFFNVPTPPTHRALDDARA 169 Query: 184 TLALVWLIRE 193 T ++ + E Sbjct: 170 THHILQSMFE 179 >gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J] gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J] Length = 1465 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 55/403 (13%), Positives = 110/403 (27%), Gaps = 34/403 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-YKGNIIEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F + + ++ +N FD + + RN Sbjct: 482 TDNHLIGAKP----LLQVLEEFQAFCHDTVLVAHNASFDIGFMNANYERNGLP------Q 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L D K + ++ L++ Sbjct: 579 TGRLLFIFLKEAREKHGVTDLLDLNIKLVAEDSYKKARIKHATIYVQNQTGLKNIFKLVS 638 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V + + L L V + Sbjct: 639 --LSNVKYFEGVPRIPRTVLDQYRDGLLLGSACSEGEVFDAVLTKGVEAATEVAKYYDFI 696 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L L+ L A N Y ++ ++ Sbjct: 697 EIMPPAIYQPLIAKELIKDQEGVQQTILDLIEVGRRLNKPVIATGNVHYIEPEDEIYREI 756 Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L E F Sbjct: 757 IVRSLGQGAMINRPIGRGEAAQPAPLPKAHFRTTNEMLDEFAF 799 >gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] Length = 1449 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 138/480 (28%), Gaps = 55/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D+ + V++ + E ++S F + +T Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ E + +F ++ +N FD + + Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + + R +Y KL +A GI N H A D Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584 Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ +K + + N+ L + + + + N + Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300 +A H Y S + L + L+G +KE+ Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + D E N + + A + + + +V + Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + L ++ + E F Y + + Q Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810 Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 + +IE + ++++++ G+ E + L + L +I Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870 >gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] Length = 1462 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 56/452 (12%), Positives = 117/452 (25%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KSLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357 MP + + D + + L + + L + + Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411 L G + + P L + ++ L E F + P+ Sbjct: 756 RSLGQGAMINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQ 812 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 L E + +E K L I++ + + L Sbjct: 813 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 1228 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 71/483 (14%), Positives = 135/483 (27%), Gaps = 56/483 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V++D ET G + DR + VRV + E E+ F + + + Sbjct: 198 LMDSYVVFDIETTGFNSVNDRIIEIGAVRV-VEGEIKETFSEF---VNPERPIPYKITQL 253 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT G +E + QF ++ +N FD + R R Sbjct: 254 TTITDDMVKDAGTIE----EILPQFLKFCEGSVLVAHNAGFDTGFIRENAKRLNLP---- 305 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ D L + R F L ++ I H A D Sbjct: 306 ---YDHTVVDTLGLARC-------------LMGHLGKFTLDNICKHLNIILETHHRAVDD 349 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT + + D N N LI M + + + Sbjct: 350 ATATGKIFVEFISMLKEKDITDLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNR 409 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS-HDELKGLVPVPIKEV-- 295 L++ + + + +L R + S A L+ + DE I Sbjct: 410 LVSESHLNYFNRRPRMPKSLINKYRDGLIIGSACEAGELYQALLDERSDETIANIVSFYD 469 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 +L P+ E E N ++ A + + + Sbjct: 470 YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDDA 529 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + + +Q + L + L E Y + Sbjct: 530 IYRSILLAGKGFK-----------DADQQAPLYFRTTQEMLDEFA--YLGSEKAKEVVIT 576 Query: 416 EKQDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465 + + + + + I + L+ + + E GD+ E + + L + L Sbjct: 577 NTNKINDMIENISPIHPDKCPPVIPDSDKTLREICYNRAHEIYGDDLPERVTSRLEKELN 636 Query: 466 WVI 468 +I Sbjct: 637 SII 639 >gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus bromii L2-63] Length = 1452 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 65/471 (13%), Positives = 136/471 (28%), Gaps = 44/471 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +D ET G A D+ + V+V ++ F + + +TGI Sbjct: 434 TFICFDIETTGLSAARDKITEIGAVKV-ENGVITDTFSTFA---NPEMPIPQKITQLTGI 489 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++E +F ++ +N FD + + S Sbjct: 490 TDDMVKDAP-SQSEAVGAFLEF---AGDNVLVAHNAPFDTSFIAKACEDMGREYNYTS-- 543 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + A D + KL +A + N H A D Sbjct: 544 --------IDTVAISRAILTDI----------KNCKLDTVAKFLRLGDFNHHRATDDAEM 585 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 + + ++ + ++ + T + ++ LI+ Sbjct: 586 LARIFINLCQRLTDDYGITKTNDINTKIAGGDFKKLPTYHQIILVKNKTGLKNLYRLISY 645 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKC 300 + YK I + R + S A +L+ + E K G + + Sbjct: 646 SHLNYFYKKPRIPKSELVKYREGLIIGSACCAGQLYMAILEGKPWGELKQIASFYDYLEI 705 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + ++ + + L ++ + + S+ + Sbjct: 706 QPAGNNSFMIRDGRFNSVDELHEIDRTIIKLAKELGKPVCATCDVHFMDPTDSEFRKILM 765 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 F D ++Q T E L D+ + Y N P+ + + ++ Sbjct: 766 AGQGFKDAEQQAPLYFR-TTAEMLKEFEWLGKDK-----AYEYVVEN-PNKI--ADMCEY 816 Query: 421 LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 + K IE + +L + + E GD E + L + L + Sbjct: 817 IRPIPKGTFPPNIEGAQEQLIDITWKRAKEKYGDPLPEIVKARLDKELNSI 867 >gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. WCH70] gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. WCH70] Length = 921 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + FVI D ET G DR Q V + + ++ FF + P Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQLGMVVI-ENGKIVDRFSSFF---NPERDIPPFVQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T IT Q AE + ++ +N+ FD + + + + Sbjct: 57 LTNITEQMVADAP-SFAEEAAKVADMLQQS---YFVAHNVSFDLQFLQEELHMAGLPPF- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R ++ + S+KL DLA I+H H A + Sbjct: 112 -----SGPTIDTVELARIVFPTAE-------------SYKLGDLAKQLHIDHDQPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208 D T L + + +L + + Sbjct: 154 DAEVTAKLFIALLNRLRQLPFITLQHLKR 182 >gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] Length = 1459 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 42/401 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G D + V+V + + F E +T Sbjct: 420 DTYIVFDIETTGFSSIKDAIIEIGAVKV-TDGKITDRFSTF---VNPKRPIPFEITNLTS 475 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + ++ + QF ++ +N FD + Sbjct: 476 ITDEMVMDSPTIDV----VLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGL------- 524 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + R + +KL +A A I N H A D Sbjct: 525 SDEFVYLDTVALARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAE 571 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E K N+ R + I+ M P H+ + L Sbjct: 572 ATAEIFVKFTEMLKKDQVGTLKEVNRYGDRNVNAIRKM-PTHHIIILAKNDIGRYNLYQL 630 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 ++ H Y S + L + G + + E + Sbjct: 631 ISQSHMTYYARRPRIPKSLLNEHREGLLIGSACEA---------GELYQAVHEKRSAQQI 681 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 + Y E E + + +L++ + I + Sbjct: 682 ARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDV 741 Query: 361 YDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399 + D + + + ++ L L +D L E Sbjct: 742 HFLNPDDEVYRRIIMAGKGFDDADRQPPLFLRTTDEMLEEF 782 >gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355] Length = 1462 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSVFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CKDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|145629536|ref|ZP_01785334.1| exonuclease I [Haemophilus influenzae 22.1-21] gi|144978379|gb|EDJ88143.1| exonuclease I [Haemophilus influenzae 22.1-21] Length = 175 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 105/175 (60%), Gaps = 2/175 (1%) Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSS 353 +H+NKCPIL P E R GID + CL+NL LR ++R++ I+N+ +S+ Sbjct: 1 MHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN 60 Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413 +V+++LY+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ Sbjct: 61 DNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLT 120 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468 E+ W ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY ++ Sbjct: 121 RAEQIKWKKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 174 >gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 1428 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 68/471 (14%), Positives = 139/471 (29%), Gaps = 43/471 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + A V+V R E ++ P+ +TGIT Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKV-RGGELVDHYTSL---IDPGVPISPKIQELTGIT 471 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E +F ++ +N FD + ++ + + Sbjct: 472 SDMVKGQPG-LSEVLEAFRKF---AAGAVLVAHNAEFDMGFLQSAARKLGQPPW------ 521 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + R +Y + +L+ L +E VN H A AD AT Sbjct: 522 DHPVLDTLALARVLY-------------PRERNHRLKTLTQKFNVELVNHHRAAADAEAT 568 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + + + D N + + ++ L++ Sbjct: 569 AKVFLHLLREAEARGAHHLDECNALGEGIDVSHARPYHATILVKNPTGLKNLYRLVSLAH 628 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK-EVHLNKCPIL 303 ++ I + R + + L LF L+G + + + Sbjct: 629 TRYLHRQPRIPRTEWLNYREGLMMGTGCLRGELF--QALLRGRSDEELLDIIQRYDFVEI 686 Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P+D + D + E + +L A + Y + + Sbjct: 687 QPLDQYRPLLRNEEIRDLEAVAEYHRRILELADRAGRPVVATGDVHYLDPEDRIYRDILQ 746 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 E++ R E + ++E+ + ++ Sbjct: 747 AGSNMEVDDPDAGYHFRTTEEMLAAFGHLG-PRAVE-----VVVENANRIAEEI--EVVK 798 Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469 L I+ + +++SL+ E GD E + L + L +I Sbjct: 799 PIPDELYTPVIDGAEEQIRSLAYEKARRLYGDPLPELVKARLEKELNSIIN 849 >gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26] gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55] gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34] gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79] gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291] gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291] Length = 1432 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/399 (13%), Positives = 120/399 (30%), Gaps = 39/399 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ FV++D ET G D+ + V++ ++ ++ + + + Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E E + +F ++ +N FD + Sbjct: 470 TGITNELIKDKPTIE-EILPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + D L + R + +L +A GI +N H A D Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + + + N + + + ++ ++ +I Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSIGIKNLYKII 625 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + ++ I ++ + + + S A +F + + + K + L Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MPID + + D + E L D+ + + + Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFDKIPVATGDVHFLDKHEAVLRK 744 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + E+ + L+ +D L E Sbjct: 745 VLKYSQGFKVD----------EEETYLHFRTTDEMLEEF 773 >gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1437 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 56/471 (11%), Positives = 129/471 (27%), Gaps = 41/471 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G DR + + V++ + IE + + +T IT Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKM-QLGNVIEKFSEY---INPGFPLSEFTTKLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E +R + ++ +N+ FD + + R Sbjct: 475 DAMVANSD-TEENIIKRFRE---WSGNAVLVGHNVTFDVGFMNAAYTRYNQPII------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D L R +Y S++L +A I AH A D T Sbjct: 525 TNAIIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDAETT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + W + ++ + + +++ + ++ P+ + A+ Sbjct: 572 GHIAWRLIKEAHERYNLNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYKLVSR 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + V S + + L ++ + K+ + Sbjct: 632 SNIEFFARVPRIPRSILEQYREGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYYDFIEIQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + ++ L + + + + ++ Sbjct: 692 PTANYQPMIESGLIATEEKLQSILKDMVAIGDKLKKPVVVTEDVKYTNP----EDKIYRN 747 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRL---PELFFRYRARNFPHTLSEKEKQDWL 421 + + P+ D +L + N L +D Sbjct: 748 ILIATQPGNPQNRTALPDLNFKTTQELLDDYAFMGADLAKKLVIDN--THLVANMLEDI- 804 Query: 422 EHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 E K I ++L + ++ G+ + + + + L+ +I Sbjct: 805 EPLKSGSYPPNIPGAGDELTERTYRTAKQWYGEPIPKEIQARIDQELKAII 855 >gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] Length = 1440 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 111/400 (27%), Gaps = 45/400 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D + V+V + E ++S F + +T Sbjct: 424 QTFVVFDIETTGLSPHSDNLTEIGAVKV-QNCEIVDSFSTF---VNPKMDISYQIQELTR 479 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E + +F ++ +N FD + + + Sbjct: 480 ITNEMVKDAPSLE----EALPEFLEFAKDSVLVAHNADFDTGFIYQKCQQLGLEYNFEK- 534 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R I F L + G+ H A D Sbjct: 535 ------VDTLTLARIINT-------------NLKRFSLDKVCKEMGVVLAGHHRAVNDAQ 575 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS--RSNTALI 240 AT + E K N+ + +D + + P + + LI Sbjct: 576 ATAEVFIKYLEIFKKKGINKLSDVNR--VYGKVDYEKLRPSHATIYAQNQTGLKHLYQLI 633 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 Y + I +L + R + S + L+ + K + K + L Sbjct: 634 TDSHIEHLYGNPRILKSLLLEKREGLIVGSACSSGELYNAVVRHKSEKEIE-KILELYDF 692 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 +MP++ + E N L++ A + + + Sbjct: 693 IEIMPLENNMYLVESGELKSVEELKEINKKLVKLGEQYDKPVVATGDVHMLDAKDAIYRT 752 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + +R L +D L E Sbjct: 753 IIKYSQGYGRKSKSER-----------LYFRTTDEMLEEF 781 >gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] Length = 910 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A N Y +++ ++ Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F R + L Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + + E K L I++ + + L Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843 >gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] Length = 1433 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 139/478 (29%), Gaps = 51/478 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F S + +N FD + F + D Sbjct: 472 ITDDMLTDAP----EVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + D + + L++ L A N Y + ++ Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 + P + ++ L F + Q Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VYFRTTNEMLDCFSF--LGEEKAKEIVVTNTQKV 796 Query: 421 LEHR------KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + +++ G+E E + L + L+ +I Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYTMARSIYGEELPEIVEARLEKELKSII 854 >gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 1511 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 57/399 (14%), Positives = 114/399 (28%), Gaps = 45/399 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G +R + VRV + ++ F D E +TGI Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRV-EEGRIVDKFSSF---VNPDVPIPFEIEKLTGIND 542 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 L ++ R + +F ++ +N FD + + + + Sbjct: 543 NMVLDAPKID----RVLPEFLEFCRGAVMVAHNAGFDISFIKENARQQGLEFNPT----- 593 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +LD + P+ + FKL +A I N H A D AT Sbjct: 594 -----VLDTVSLARVLLPNLNR----------FKLDTVAKELKINLANHHRAVDDAGATA 638 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 + + + + N+ + I+ M P H+ + L V+ Sbjct: 639 EIFVRFIKMLKERDIFDLSQLNELSRMTVEMIRKM-PTYHIIIIAKNDVGRVNLYRLVSE 697 Query: 246 -HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHLNKC 300 + Y S + + L + L+G+ I + + Sbjct: 698 SNLTYFARRPRIPKSLLSQYREGLIIGSACEAGELYQALLRGVPDTEIHKIVDFYDYLEI 757 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L + ++ + + N ++ A + + +V ++ Sbjct: 758 QPLGNNAFMLRDEKSPVNSEEELMDLNRRIVGLGEQYNKPVCATCDVHFLDPEDEVYRRI 817 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + L L +D L E Sbjct: 818 IMSSKGFK-----------DADDQAPLYLRTTDEMLREF 845 >gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] Length = 921 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 31/188 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +V+ D ET G D A DR + A VR+ + P + Sbjct: 2 LPQTYVVLDVETTGLDPARDRIIEIAAVRL-EGGNITRQFQTL---VNPGRPIPPAIERL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + +G+N + ++ + + Sbjct: 58 TGISDAMVREAP-PLPEVLPGLLDLFR--DAIPVGHNGTFDLAFLNQALGH--------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 LLD + P S +L ++ +E H A D Sbjct: 106 -----GWHSPLLDTLALSRILFPCLA----------SHRLDYMSKYLTLEATGHHRALDD 150 Query: 181 VYATLALV 188 V T L+ Sbjct: 151 VLTTARLL 158 >gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM 43043] gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM 43043] Length = 590 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D E+ G A + V+V R + I + +TGI Sbjct: 19 TFVVVDLESTGGSPAQCGITEIGAVKV-RGGDVIGEFQTL---VNPAEPIPAFISVLTGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E F ++ +N FD + + R Sbjct: 75 TDAMVADSPRIE----SAFPAFLEFAAGSVLVAHNAGFDISFLKAAAVRTGTPWP----- 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G D L + R + D + KL LA H A D A Sbjct: 126 -GFDVLDTLTLARQL-----------VTRDEVPNHKLSSLARVFASPTTPDHRALHDARA 173 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + + Sbjct: 174 TVDVLHGLIERVGNLGVHTLE 194 >gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] Length = 1439 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 55/445 (12%), Positives = 119/445 (26%), Gaps = 49/445 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G + + VRV + F +T I Sbjct: 412 KFVVFDIETTGFSPLTCQIIEIGAVRV-ENGVITDRFSTF---VNPKVPIPYRIEQLTSI 467 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + QF ++ +N FD + R Sbjct: 468 NDSMVMDAP----DIQTILPQFLEFCAGAVMVAHNADFDMSFIIENCKRQGLPQEYT--- 520 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + R FKL +A A G+ + H A D Sbjct: 521 ----YVDTVGMAR-------------FLLPALNRFKLDTVAKAVGVSLDHHHRAVDDAAC 563 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + E + + D N+ + I+ + P H + L V Sbjct: 564 TAEIFVRFVEMLKERDIFDMDTLNQQGNVSVNTIKKL-PTYHAIILARNETGRVNLYKLV 622 Query: 244 AW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCP 301 + H +Y S + + L + L+ I + V+ Sbjct: 623 SQSHLKYYRRRPRVPKSLFLEHREGLLIGSACEAGELYQALLRNAPEPEIARLVNFYDYL 682 Query: 302 ILMPI----DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P+ E +R + N +++ + A + + ++ Sbjct: 683 EIQPLGNNAFMIADEKNDRVKSNEDLIELNKKIVKLGDQFKKPVVATCDVHFMDPQDEIY 742 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 ++ + + + L L ++ L E Y + Sbjct: 743 RRIIMAGNGF-----------SDADNQAPLYLRTTEEMLEEFS--YLGSEKAEEVVITNT 789 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQS 442 + + ++ +++ +++ Sbjct: 790 NKIADMI-EKISPIHPDKFPPVIEN 813 >gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] Length = 1403 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 83/258 (32%), Gaps = 30/258 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G DR + V++ E I+ F + + +T Sbjct: 371 EKYVVFDIETTGFSAENDRIIEIGAVKI-EDGEIIDRFSTF---VNPEVPIPFKIEKLTS 426 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +E + + +F C++ +N FD + RN + Sbjct: 427 INDSMVMGAPKIE----QVLPEFLEFCEGCVVVAHNAEFDTGFIRNKAAKQGM------- 475 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L + R + + FKL L + + H A D Sbjct: 476 TFDNTVVDTLAIARFLVPRLHN-------------FKLDTLTKHFNVVLTSHHRAVDDAE 522 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + + E D N+ + I+ M P H+ + + + L Sbjct: 523 ATAGIFLKMCELLKMRDILTLDQLNEAGTPDVDAIRKM-PTYHIILLASSEQGRINLYRL 581 Query: 243 V-AWHPRYKDSVIGCNLS 259 + A H Y + S Sbjct: 582 ISASHITYFANRPRIPKS 599 >gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612] gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612] Length = 1369 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 88/277 (31%), Gaps = 29/277 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G D + A V++ + +++ P +TGIT Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKI-KNKHIVDTFSKI---VNPHRPIPPFITNLTGIT 409 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q G E + +F I+ +N +FD + + + N Sbjct: 410 NQMVED-GEEEEAAVKAFCEF---CGDLILVAHNAKFDMGFMEIALNAHHLE-------N 458 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + R L+ LA ++ + H A D + Sbjct: 459 NITYIDTLAMSRT-------------LIPTINKHNLKKLASYFKVDMGHHHRALDDSVCS 505 Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ + + E + + ++I + ++ + + L++ Sbjct: 506 AKIFVKLMELAQKRDVEEVAGLNGLMDVEQIIKSGDTYHIIIYAKNQAGLKDLYKLVSEA 565 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS 280 + Y+ I +L R + S A L+ + Sbjct: 566 HINYFYRRPRIPKSLLAAHRENLIIGSACEAGELYKA 602 >gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] Length = 1464 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 56/446 (12%), Positives = 117/446 (26%), Gaps = 34/446 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIIEQFDEF---IDPGHPLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CQGTVLVAHNATFDVGFMNANYERHQLP------T 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + +L + + + Sbjct: 578 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V + + + L + ++ + Sbjct: 638 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + D + + L + N D+ + + +D + Sbjct: 698 MPPAIYAPLIAKDLIKDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757 Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 I I P L + ++ L + F + A T ++ Sbjct: 758 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYEIVVTNTQAMAN 817 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E KK L I+ + ++ Sbjct: 818 QIEEVEVVKKDLYTPFIDRAEEQVAE 843 >gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330] Length = 1462 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 57/450 (12%), Positives = 118/450 (26%), Gaps = 40/450 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLS 413 P L + ++ L E + N P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFTFLGEDLAKKLVITN-PNQL- 813 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 -AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 222 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 26/196 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++V++D ET G A D + + ++V + E + A I G Sbjct: 16 ENYVVFDLETTGISPAEDSILEISAIKV-KGHEPVAELNTL---VNPGTHIPAGATRING 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E F ++G+N FD + F + Sbjct: 72 ITDDMVKAAPG-LKEVLPDFLSFIE--GEILVGHNIQSFDLLFLYRAAQELFGKEVPNDY 128 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + + +L D++ I AH A +D Sbjct: 129 ------VDTLFMAKT-------------TLPQLGRHRLTDISAYFHINTEGAHRALSDCV 169 Query: 183 ATLALVWLIREKKPKL 198 + + K Sbjct: 170 MNQKCYEQMGKLVHKE 185 >gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621] gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621] Length = 1433 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 65/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V++ + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ ++ L F + + Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTNKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + ++ GDE E + L + L+ +I Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYVMARSIYGDELPEIVEARLEKELKSII 854 >gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72] Length = 1462 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 56/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHNLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D + + L+ L A + Y +++ ++ Sbjct: 696 MPPAIYEPLISKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGDVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] Length = 1529 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 55/391 (14%), Positives = 106/391 (27%), Gaps = 35/391 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G +R + V++ R E +E F +T I Sbjct: 497 TFVVFDIETTGFSPIKNRIIEIGAVKI-RNGEILERFSEF---INPQVPIPYRIEKLTSI 552 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I +F ++ +N+ FD + D + Sbjct: 553 TDEMVMDAPT--REVI--IPKFVEFCKDAVLVGHNVAFDISFINQNCQDLGIDVDYTT-- 606 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + F L +A + + H A D Sbjct: 607 --------VDTLWLARYFF----------PLQAKHTLDAVAKTLNVVLDHHHRAVDDAEC 648 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + N I+++ P H + + L V Sbjct: 649 TALIFNKFIPMLKEQKAENLTDVNILGKPTPEMIRHLRP-NHCIILAKNTLGRVNLYTLV 707 Query: 244 A-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-----KEVHL 297 + H Y S ++ + L ++G P I +L Sbjct: 708 SKSHIDYFRRFPLIPKSELLKYREGLIIGSACCAGELYGAVVEGRPPEEIAGLVNFYDYL 767 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 P+ + +E D N ++R A + + + ++ Sbjct: 768 EIQPVGNNHFMVDSDRYEDINSDDDIREINKEIVRLGEQFNKPVVATCDAHFLNPEDEIY 827 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388 + D + LRT E ++ + Sbjct: 828 RTIIMAGKGMNDEEPAPLFLRTTEEMMAEFD 858 >gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] Length = 1535 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 57/404 (14%), Positives = 105/404 (25%), Gaps = 46/404 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G DR + V+V + + F +T I Sbjct: 488 TYVVFDIETTGFSAVTDRIIEIGAVKV-EDGKITDKFSTF---VNPKRPIPFRITELTSI 543 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +E + QF ++ +N FD + R ++ Sbjct: 544 TDEMVIDSPDIE----TILPQFIEFIGDAVLVAHNASFDVGFIEQNCKRQKIEA------ 593 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D + + R FKL +A A I N H A D Sbjct: 594 -DFTYVDTVALARV-------------LLPALNRFKLDTVAKALNISLENHHRAVDDAGC 639 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + N+ I+ + P HV + L V Sbjct: 640 TAEIFVKFVQMLKERELTTLAKVNEFGDLNPDSIKKL-PTYHVIILARNDIGRVNLYQLV 698 Query: 244 -AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCP 301 A H Y + S + L + L G I K V Sbjct: 699 SASHLVYYNRRPRIPKSVLNEHREGLIVGSACEAGELYRALLDGKPDETIAKIVDFYDYL 758 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE----NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P+ + N ++ + + +V Sbjct: 759 EIQPLGNNAFMVESDKVTSVNSMEDIMDLNQKIVHLGEQFHKPVVGTCDVHFMDPEDEVY 818 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 ++ ++ + L L ++ L E + Sbjct: 819 RRIIMAGKGFG-----------DADKQAPLYLRTTEEMLDEFAY 851 >gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 580 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 26/202 (12%) Query: 4 HFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G + V+V R E + + P +TG Sbjct: 43 TFCVVDLETTGNSPDNGGMITEIGAVKV-RGGEVLGEFQTL---VNPHTGIPPSIAVLTG 98 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +E+ + F C++ +N FD + + Sbjct: 99 ITNSMVASSPTIES----VLPAFLEFAEGCVLVAHNAPFDVGF---------LKHFAAKQ 145 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + R+++LD ++ D A + KL LA G H A D Sbjct: 146 ERPWPRFEVLDTVKIARRV--------ITRDEAPNHKLGSLARVFGSPTTPNHRALQDAR 197 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT+ ++ + E+ L + Sbjct: 198 ATVDVLHGMMERLGNLGVLTLE 219 >gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813] Length = 1468 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A + Q A ++ + IE + F + +TGI Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + ++ +N FD + + R+ Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581 Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L + K + ++ L++ Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V S + L L + + Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + L + + L + Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411 + L G + + L + ++ L E F + A +T Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + ++ + +E K L ++ + ++ L Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848 >gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1] gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1] Length = 1375 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 70/475 (14%), Positives = 143/475 (30%), Gaps = 45/475 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G + + A V++ R E I+ E F + + +TG Sbjct: 423 DTYVVFDVETTGLSAMYNTIIELAAVKI-RDGEIIDRFESFA---NPHHPLSATTINLTG 478 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E + + F ++ +N FD + + + D Sbjct: 479 ITDDMVEGAP----EVAEALKAFKDWAGDAVLVAHNASFDMGFLNVGYGKAGLD------ 528 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R +Y + +L LA +E H A D Sbjct: 529 KAENPVIDTLELARLLY-------------PEMKNHRLNTLAKKFDVELTQHHRAIYDAE 575 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ + + + +D N + + K + P Sbjct: 576 ATGYLLLKMLKDANEKGIIYHDQFN-DYMGKGDAYKRSRPSHVTLLAQTEEGLKNLFKLV 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 H Y V S + + + ++ + Sbjct: 635 TISHLEYFFRVPRIPRSLLQKYRSGILVGSGCDKGEVFEGMMQKAPEEVEEAARFYDYLE 694 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P + + + E + +++ L A N Y + + V ++ Sbjct: 695 VHPKEVYQHLIELELIQSDQNLEEIIGNIVQLGEKLDLPVVATGNVHYINPTDKVHREIL 754 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQD 419 G + + L ++ ++ L F + +A+ T + K Sbjct: 755 VGSQGGANPLNRHK--------LPDVHFRTTNEMLDCFSFLGKEKAKEIVVTNTNKIADL 806 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 E K L +IE +++ ++ G+E E + L + L+ +I Sbjct: 807 IDEIKPIKDDLYTPKIEGADEEMRRMSYAMAKSIYGEELPEIVEARLEKELKSII 861 >gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 1468 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A + Q A ++ + IE + F + +TGI Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + ++ +N FD + + R+ Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581 Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L + K + ++ L++ Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V S + L L + + Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + L + + L + Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411 + L G + + L + ++ L E F + A +T Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + ++ + +E K L ++ + ++ L Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848 >gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9] gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus thermophilus LMD-9] gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03] Length = 1464 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 56/446 (12%), Positives = 116/446 (26%), Gaps = 34/446 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F Y +TGI Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGYPLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CKGAVLVAHNATFDVGFMNANYERHQLP------T 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + +L + + + Sbjct: 578 TGRLLFIFIKDVFEKHGLTNLEQLNTELVSDDSYKKSRVKHATLYVQNQTGLKNLFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V + + L + ++ + Sbjct: 638 LSNVSYFEGVARIPRKVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + D + + L + N D+ + + +D + Sbjct: 698 MPPAIYAPLIAKDLIKDEGAIEQLIKDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757 Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 I I P L + ++ L E F + A ++ Sbjct: 758 RALGQGAMINRPIGKGENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMAN 817 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E KK L I+ + ++ Sbjct: 818 QIEEVEVVKKDLYTPYIDRAEEQVAE 843 >gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] Length = 1516 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 108/404 (26%), Gaps = 45/404 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ +V++D ET G + +R + V+V + F D E + Sbjct: 488 LSDSYVVFDIETTGFSSSRNRIIEIGAVKV-ENGTIADKFSTF---VNPDVPIPFEIEKL 543 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI L + E R +F ++ +N FD + R Sbjct: 544 TGINDNMVLPYPKIN-EILPRFLEF---CGNSVLVAHNAAFDVSFIAYNAARLNL----- 594 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + + R +KL +A A + N H A D Sbjct: 595 --AFEPTVIDTVALARL-------------LLPNLNRYKLDTVAKALVVSLENHHRAVDD 639 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + + + D N I+ + P HV + L Sbjct: 640 AGCTAEIFVAFVKMLRERGVETLDELNGLSTMSADMIKKL-PTHHVIILAANDVGRVNLY 698 Query: 241 APV-AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP----VPIKEV 295 + H + S + + L + L+G+ + Sbjct: 699 RLISYSHIDFYARRPRIPKSVLNQNREGLIVGSACEAGEIYQALLRGVSDAELAKLVNFY 758 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + L + ++ + N ++ A + + + Sbjct: 759 DYLEIQPLGNNGFMLRDEKSSVKSEQDLIEINQRIVTLGEQFGKPVCATCDVHFLDPEDE 818 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 V ++ D + + L L ++ L E Sbjct: 819 VYRRIIMAGQGFKDS-----------DDQAPLYLRTTEEMLKEF 851 >gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] Length = 608 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V++ R E + P V +TGI Sbjct: 62 TFVVVDLETTGGSADQDSITEIGAVKI-RGGEVLGEMATL---VDPGRSIPPYIVELTGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E R + F ++ +N FD + + R+ Sbjct: 118 TTAMLIGAPPIE----RVLPAFLEFAEGAVLVAHNAPFDIGFLKAAASRSARPWPA---- 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +L ++ D A S KL LA + H A D A Sbjct: 170 -----FRVLCTVKLARRVL--------TRDEAPSVKLSALAHLFQVTTQPTHRALDDARA 216 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ + Y Sbjct: 217 TVDVLHGLIDRVGNQGVHSYS 237 >gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] Length = 586 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V++ R E + P V +TGI Sbjct: 40 TFVVVDLETTGGSADQDSITEIGAVKI-RGGEVLGEMATL---VDPGRSIPPYIVELTGI 95 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E R + F ++ +N FD + + R+ Sbjct: 96 TTAMLIGAPPIE----RVLPAFLEFAEGAVLVAHNAPFDIGFLKAAASRSARPW------ 145 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +L ++ D A S KL LA + H A D A Sbjct: 146 ---PSFRVLCTVKLARRVL--------TRDEAPSVKLSALAHLFQVTTQPTHRALDDARA 194 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ + Y Sbjct: 195 TVDVLHGLIDRVGNQGVHSYS 215 >gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] Length = 1565 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 57/402 (14%), Positives = 108/402 (26%), Gaps = 45/402 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G ++ + V+V + F D + +TG Sbjct: 540 DTFVVFDIETTGFSPKKNKIIEIGAVKV-VDGRITDKFSTF---VNPDVPIPFDIEKLTG 595 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I L + + + QF ++ +N FD + + + Sbjct: 596 INDSMVL--PYPKIDVI--LPQFLEFVGDAVLVAHNASFDVGFIGHFAEKLELPFDPT-- 649 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +LD + P+ + FKL +A A I N H A D Sbjct: 650 --------VLDTVAIARLLLPNLNR----------FKLDTVAKALNISLQNHHRAVDDAG 691 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + + + N I+ + P HV + + Sbjct: 692 ATAEIFAAFVKMLRDRDVNDLNQLNALSTMDTDTIRKL-PTHHVIILAKNDIGRVNMYRL 750 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHL 297 V+W H Y S + + L + L+G I Sbjct: 751 VSWSHLEYYARRPRIPKSLLEKYREGLIIGSACEAGELYQALLRGAPDTEIARLVSFYDY 810 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + L + ++ N ++ A + + +V Sbjct: 811 LEIQPLGNNAFMLRDEKSTVKSQEDLIEINKKIVELGMQFNKLVCATCDVHFLDPQDEVY 870 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ D + + L L ++ L E Sbjct: 871 RRIIMAGQGFKDS-----------DDQAPLYLRTTEEMLEEF 901 >gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4] gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 1433 Score = 114 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ ++ L F + + Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + ++ GDE E + L + L+ +I Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 854 >gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] Length = 1435 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 67/477 (14%), Positives = 136/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 523 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 524 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + L ++ ++ L++ Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 630 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 745 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ ++ L F + + Sbjct: 746 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 799 Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + ++ GDE E + L + L+ +I Sbjct: 800 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 856 >gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] Length = 1433 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ ++ L F + + Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + ++ GDE E + L + L+ +I Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 854 >gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] Length = 1520 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 42/401 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G D + V+V + + F E +T Sbjct: 481 DTYIVFDIETTGFSSIKDAIIEVGAVKV-TDGKITDRFSTF---VNPKRPIPFEITNLTS 536 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + ++ + QF ++ +N FD + Sbjct: 537 ITDEMVMDSPTIDV----VLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGL------- 585 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + R + +KL +A A I N H A D Sbjct: 586 SDEFVYLDTVALARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAE 632 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E K N+ R + I+ M P H+ + L Sbjct: 633 ATAEIFVKFTEMLKKDQVGTLKEVNRYGDRNVNAIRKM-PTHHIIILAKNDIGRYNLYQL 691 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 ++ H Y S + L + G + + E + Sbjct: 692 ISQSHMTYYARRPRIPKSLLNEHREGLLIGSACEA---------GELHQAVHEKRSAQQI 742 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 + Y E E + + +L++ + I + Sbjct: 743 ARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDV 802 Query: 361 YDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399 + D + + + ++ L L +D L E Sbjct: 803 HFLNPDDEVYRRIIMAGKGFDDADRQPPLFLRTTDEMLEEF 843 >gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1489 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 64/482 (13%), Positives = 131/482 (27%), Gaps = 60/482 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + V V E + F +T I Sbjct: 462 FVVFDIETTGFSSLTCQIIEIGAVLV-ENGEITDRFSTF---VNPKVPIPFRIEQLTSIN 517 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + +F ++ +N FD + R + Sbjct: 518 DSMVMDAPTIE----EVLPKFLEFSKDAVMVAHNADFDMGFIMKNCDRLGI-------AH 566 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + + R FKL +A A G+ N H A D T Sbjct: 567 DFTYVDTVGMAR-------------FLLPALNRFKLDTVAKAVGVSLENHHRAVDDAACT 613 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + + D N+ + I+ + P HV L V+ Sbjct: 614 AEIFVKFVKMLEERDIRDVDMLNEQGAVSVNTIRKL-PTYHVIIFARNETGRINLYKLVS 672 Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPI 302 H +Y S + L + L+ I + V+ Sbjct: 673 QSHLKYYHRRPRVPKSVLEQYRDGLLVGSACEAGELYQAILRNAPDTEIARLVNFYDYLE 732 Query: 303 LMPI----DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + + N +++ + A + + ++ Sbjct: 733 IQPVGNNRFMIADDKHDMISSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQDEIYR 792 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 ++ + ++ + L L ++ L E Y + Sbjct: 793 RIIMAGNGF-----------SDADEQAPLYLRTTEEMLEEFA--YLGSEKAEEVVITNTN 839 Query: 419 DWLEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 + + ++ IE L+++ + E GD E + + L L + Sbjct: 840 KIADMI-EKISPIHPDKFPPVIENSDQDLKNICFTKAHEMYGDPLPEIVESRLDRELNSI 898 Query: 468 IP 469 I Sbjct: 899 IS 900 >gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603] gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603] Length = 1433 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D + A V+V + E I+ E F + +TG Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E +F + +N FD + F + + Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKVGIE------ 521 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L++ R + +L + IE H A D Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ ++++ K FEY + + + ++ ++ L++ Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y+ + +L R + + +F ++ + Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP + + D + T++ L + D + +Y Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + P ++ ++ L F + + Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 797 Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 K L +IE ++ + ++ GDE E + L + L+ +I Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 854 >gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] Length = 1439 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 66/488 (13%), Positives = 142/488 (29%), Gaps = 62/488 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G V D +F V++ + E I+ + F +T I Sbjct: 401 TYVAFDLETTGLSVIHDGITEFGAVKI-KNGEVIDRMQKF---INPGKTISSRISSLTNI 456 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + ++ + I +FF CI+ +N FD + R+ Sbjct: 457 TNEMVKNEPTID-KVLPEIMEFF---GDCILVAHNASFDVGFLNENLRRSNMSEI----- 507 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D L + RAI S++L ++ + + AH A D Sbjct: 508 -KNPIIDSLALARAI-------------LKPMKSYRLGNVCRSYRVNYDDEVAHRADYDA 553 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + L+ + + +Y K + I + ++ ++ L++ Sbjct: 554 KVLGDVFNLMIHQIMQSEKYSLLDVCKLTSDDVYKIVYPYHMCALALNKTGLKNMFKLVS 613 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +S I R S +F + L + Sbjct: 614 EANTKYFHGESRIPKERLEYYREGLLFGSSCYNSDVFEAALNLSDERLEN--AMKFYDYI 671 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQL 360 + P++ D +++L + ++ + + + Sbjct: 672 EIQPLEDYFHLIERGKLQDKDELIKSLQRIVTCAKKLNKIIVATGDVHFLDVKDRIFRDV 731 Query: 361 YDGFFADVDRQIMDRI--LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + + R + L +D L +P LS++E Sbjct: 732 FISNPTIGIGHKAHPLCDRRNPKAKNPCQYLRTTDEMLEC---------YP-YLSKEETF 781 Query: 419 DW--------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINAL 460 ++ ++ L +I+ L+ L + + G+ + L Sbjct: 782 EYVVTNTNKIADMVEEIKPIHDKLFTPKIDGADENLKKLCYETAHKTYGNPLPSIVEKRL 841 Query: 461 YEYLQWVI 468 + L +I Sbjct: 842 EKELSNII 849 >gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] Length = 529 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 60/191 (31%), Gaps = 25/191 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + ++ R + I + F +TGI Sbjct: 22 TFVVVDLETTGLKAKNDHIIEIGAIKT-RGGKTIGTFSSF---IDPGMEIPDHITSLTGI 77 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + I QF + +N +FD + R D Sbjct: 78 TTADVETAP----QLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWP----- 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 S D L + R + SFKL LA G + AH A D A Sbjct: 129 -SPSVVDTLTLARRV-----------LDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIA 176 Query: 184 TLALVWLIREK 194 T+ ++ + E+ Sbjct: 177 TVDVLHYLMER 187 >gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827] gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827] Length = 578 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G A D + V+V R I + P+ V +TGI Sbjct: 30 TFVVFDLETTGPRAAEDGITEIGAVKV-RGGRVIGEFGTL---VDPERGIPPQIVALTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T V + + F ++ +N FD + + R+ Y Sbjct: 86 TQNMVTGAPV----LASVLPAFLEFAEGAVLVAHNSGFDVGFMKAACERHGYAWP----- 136 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + A S KL L+ G+ H A D A Sbjct: 137 ------------KPPVVCTVKLARRVLSREEAPSCKLSALSALFGVPEAPNHRALVDARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + + + Sbjct: 185 TVEVLHRLLERVGSVGVHSLE 205 >gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066] gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus CNRZ1066] Length = 1464 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 56/446 (12%), Positives = 116/446 (26%), Gaps = 34/446 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F Y +TGI Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGYPLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CKGAVLVAHNATFDVGFMNANYERHQLP------T 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + +L + + + Sbjct: 578 TGRLLFIFIKDVFEKHGLTNLEQLNTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V + + L + ++ + Sbjct: 638 LSNVSYFEGVARIPRKVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + D + + L + N D+ + + +D + Sbjct: 698 MPPAIYAPLIAKDLIKDEGAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757 Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 I I P L + ++ L E F + A ++ Sbjct: 758 RALGQGAMINRPIGKEENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMAN 817 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E KK L I+ + ++ Sbjct: 818 QIEEVEVVKKDLYTPYIDRAEEQVAE 843 >gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] Length = 623 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 57/188 (30%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G DR + V++ R E + P+ V +TGI Sbjct: 58 TFVVVDLETTGGSADDDRITEIGAVKI-RGGEVLGEFATL---VDPGRAIPPQIVALTGI 113 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E +F ++ +N RFD + R R + Sbjct: 114 TTAMLYDAPRIE-EVLPAFAEF---ARGTVLVAHNARFDMGFLRKSAARMRLPWPFSTS- 168 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + A + KL LA + H A D A Sbjct: 169 --------LCTVVMARRIL--------SRQEAPTVKLSALAELFQVSVRPTHRALDDARA 212 Query: 184 TLALVWLI 191 T+ + + Sbjct: 213 TVEVFHRL 220 >gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio fibrisolvens 16/4] Length = 1480 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 51/405 (12%), Positives = 117/405 (28%), Gaps = 48/405 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G + ++ + V+ + E ++ F + +T Sbjct: 446 DEYVVFDIETTGFNPKNNKIIEIGAVKF-KDGEIVDHFSEF---INPEVPIPYRITELTS 501 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT L + + + +F ++ +N FD + R + + Sbjct: 502 ITDDMVLDAPTI--DVI--LPKFMEFCKGTVLVAHNAGFDTSFIRYNCKQLGLEYDYTH- 556 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D ++V R F L + + + + H A AD Sbjct: 557 ------VDTVEVAR-------------YLHPNNARFNLDAVCKLENVVNEHHHRAVADAE 597 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA-LI 240 T + I + + + L + +K + + + V R N L+ Sbjct: 598 VTAKIFEKFIVKLEAENIHTLTELNDKAKPKAEQIKKMKAHHCIVLAKNDLGRINLYRLV 657 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + + +L + R + S A L+ + + + V + Sbjct: 658 SESHLKYFSRYPRVPKSLLSECREGLIIGSACEAGELYDAIVDDRDDSEVA-RIASFYDY 716 Query: 301 PILMPIDYC------KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + P+ K +E + N ++ A + + Sbjct: 717 LEIQPVGNNEFMIRSDKPKYENFNSVKDLQDVNKKIVALGEEFNKPVVATCDVHFLDPQD 776 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ ++ +Q + L L +D L E Sbjct: 777 EIYRRIIMANKGFD-----------DADQQAPLYLHSTDEMLEEF 810 >gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9] gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9] Length = 1406 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 70/482 (14%), Positives = 144/482 (29%), Gaps = 59/482 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + F ++D ET G D + V++ ++ + I++ E F +TG Sbjct: 391 DEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKLTG 446 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I +E E + +F N+ ++ +N + N Sbjct: 447 IDESMVKDAPSIE-EILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLN------- 496 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L++ R ++KL LA ++ + H A D Sbjct: 497 -VNNTVLDTLELSR-------------HLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAR 542 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + ++ +L N + LR+ P+ HV+ + R L Sbjct: 543 ATAEIFIKTIDRLKELGVKKVKDIN-DILRESEVDIKKLPVYHVTILVKDQRGLRNLYEI 601 Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV----PIKEVHL 297 ++ + Y S + + + L ++ L L I Sbjct: 602 ISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAILSNLEEKKLENIISFYDY 661 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + + ++ ++ + + K + LL A + + D+ Sbjct: 662 LEVQPVGNNEFLIEKGEVKSVEELKEINRRIYLL--GKKYNKLVVATGDVHFLDPWDDIY 719 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 ++ ++ L +D L E F Y + Sbjct: 720 RKILMAGKGYK-----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNP 766 Query: 418 QDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 + +++ + IE + +L+ L + E GD E + N L L + Sbjct: 767 NKIADLIEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSI 826 Query: 468 IP 469 I Sbjct: 827 IN 828 >gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] Length = 1468 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A + Q A ++ + IE + F + +TGI Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSDFTTELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + ++ +N FD + + R+ Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581 Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L + K + ++ L++ Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V S + L L + + Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + L + + L + Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411 + L G + + L + ++ L E F + A +T Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + ++ + +E K L ++ + ++ L Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848 >gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] Length = 1468 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A + Q A ++ + IE + F + +TGI Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSDFTTELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + ++ +N FD + + R+ Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581 Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L + K + ++ L++ Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V S + L L + + Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + L + + L + Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411 + L G + + L + ++ L E F + A +T Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + ++ + +E K L ++ + ++ L Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848 >gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909] gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae A909] Length = 1468 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A + Q A ++ + IE + F + +TGI Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSDFTTELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + ++ +N FD + + R+ Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581 Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L + K + ++ L++ Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V S + L L + + Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + L + + L + Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411 + L G + + L + ++ L E F + A +T Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + ++ + +E K L ++ + ++ L Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848 >gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] Length = 1442 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 29/287 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G D + A V++ + +++ + F + +T IT Sbjct: 427 FVFFDLETTGLYAGRDAIIEIAAVKI-KNKHVLDTFQTF---VNPHRPIPQKITELTSIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + EA + F + I+ +N FD + R N Sbjct: 483 DQMVAQGKEEEA----AVRAFLDFCDGKILAAHNASFDMGFMSIALERYGIP-------N 531 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + R L+ LA I+ + H A D + Sbjct: 532 TITYVDTLPMART-------------LIPDIARHNLKKLASYFKIDMGHHHRAIDDSICS 578 Query: 185 LALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + + K N+ +L ++I + ++ + ++ L++ Sbjct: 579 AKIFVRLMGLAEKQHCDRAADLNRLMRLEQIIKTERPYHVIIYAKDQDGLQALYDLVSAS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290 YK I +L R + S A L+T+ E + Sbjct: 639 HVDYFYKKPRIPKSLLQKKRKHLLIGSACEAGELYTAVKENWNDARL 685 >gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] Length = 1417 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 57/386 (14%), Positives = 119/386 (30%), Gaps = 31/386 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F ++D ET G D ++ + V + R E +E + F P+ +TGIT Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVII-RNGEVVEEFDTF---VKPGKPITPKITELTGIT 452 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E E F + ++G+N FD + R R+ Sbjct: 453 NEMVADAP-SEKEALEAFLAF--AGDRILVGHNVHAFDMRFLRAAAKRSGI-------KL 502 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + + +Y + +K + + AH A D A Sbjct: 503 EPTYIDTLTMAQTMYPGLHN-------------YKQGTINKHLELPAYEAHRACEDSAAL 549 Query: 185 LALVWLI-REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + ++ + K + + + + + L+ + ++ +++ Sbjct: 550 GRIFCVMLNDLAEKEVTKVSEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEA 609 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +K + +L R L S A L+ + + + K + Sbjct: 610 HVNYFFKKPRVPRSLLNKYRDGLLLTSACEAGELYRAIVDGTSYEELK-KIAAYYDILEI 668 Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ-LY 361 P+ + +R E N T+++ +L A + +T + L Sbjct: 669 QPLGNNAYMVRDGKVDSEERIKEFNRTVIKLGEDLHKPVIATGDVHFTEPEDAIYRAVLQ 728 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTL 387 G RT + L+ Sbjct: 729 AGNGFKDADNQPPLFFRTTQDMLAQF 754 >gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium prausnitzii L2-6] Length = 1417 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 60/391 (15%), Positives = 121/391 (30%), Gaps = 39/391 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F ++D ET G D ++ + V V R E +E + F + +TGIT Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIV-RNGEVVEEFDTF---VKPGKPITSKITELTGIT 452 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EAE + F ++G+N FD + R R+ + Sbjct: 453 NEMVADAP-SEAEALKAFLDFVD--GRILVGHNAHSFDIRFLRAAAKRSGIEF------- 502 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + +A+Y + +K + + AH A D A Sbjct: 503 EPTYIDTLTMAQAMYPGLHN-------------YKQGTINKHLELPAYEAHRACEDSAAL 549 Query: 185 LALVWLIREKKPKLFEYLYDYRN-----KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + ++ + + N ++ K + L+ + ++ + Sbjct: 550 GRIFCVMLKDLEEKQVTAVSGINTGLGGNREVLK----KKYYHLIILVRSQMGLKNLYKI 605 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ + +K + +L R L S A L+ + E + K Sbjct: 606 VSEAHVNYFFKKPRVPRSLLNKYRDGLILTSACEAGELYRAIVEGHSYEELK-KIASYYD 664 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ E + + N T+++ +L A + +T + Sbjct: 665 VLEVQPLGNNAYMVREGKVESEEVIKDFNRTVIKLGEDLHKPVIATGDVHFTEPEDAIYR 724 Query: 359 Q-LYDGFFADVDRQIMDRILRTAPEQLSTLN 388 L G RT + L+ + Sbjct: 725 SVLQAGNGFKDADNQPPLFYRTTEDMLNQFS 755 >gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium cf. saccharolyticum K10] Length = 1037 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 71/480 (14%), Positives = 145/480 (30%), Gaps = 59/480 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G +R + V+V + ++ F + E +T I+ Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKV-ENGKIVDRFSTF---VNPEVPIPFEIEKLTSISD 253 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 L +E E + +F + ++ +N FD + R+ Sbjct: 254 NMVLGAPKIE-EVLPKFLEF---CSDAVMVAHNASFDMSFIRHNAMI----------QGK 299 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +LD + P+ + FKL +A I N H A D AT Sbjct: 300 SFEPTVLDTVSMARFLLPNLNR----------FKLDTVAKELRISLENHHRAVDDAGATA 349 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244 + E D N+ + I+ M P H+ + L V+ Sbjct: 350 EIFVKFVEMLKSRGIENLDELNEQSRMSVETIRKM-PTNHIIILAKNDVGRINLYRLVSD 408 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303 + Y S ++ + L + L+G+ I K V + Sbjct: 409 SNLVYYAKRPRIPKSQILKYREGLIIGSACEAGELYQALLRGVPEAEINKIVSFYDYLEI 468 Query: 304 MPI-DYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P+ + E+ + + L+ N ++ A + + +V ++ Sbjct: 469 QPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPVCATCDVHFLDPEDEVYRRI 528 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 D + + L L ++ L E F Y + + + Sbjct: 529 IMAGKGFKDC-----------DDQAPLYLRTTEEMLRE--FEYLGSDKAEEVVITNTRKI 575 Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + ++ I L+++ + E G++ + ++ L L +I Sbjct: 576 AAMC-ERISPVRPDKCPPVIPNSDEMLRNICYNRAHEMYGEDLPKIVVERLERELNSIIS 634 >gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484] gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484] Length = 620 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + V+V R + + + P +TGI Sbjct: 42 TFVVVDLETTGGTPADCAITEIGAVKV-RGGQVLGEFQTL---VDPGGPVPPYIQVLTGI 97 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + F ++ +N FD + + R + Sbjct: 98 TTSMLVGAPRIE----TVLPSFLEFAGDAVLVAHNAPFDVGFLKAAAARTGHPWP----- 148 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GN D + + R D A + KL LA H A +D A Sbjct: 149 -GNRVLDTVRLARRA-----------VTRDEAPNHKLSTLAALFHATVTPNHRALSDARA 196 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + + L + Sbjct: 197 TVDVLHALLGRLGPLGVTHLE 217 >gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC 3773] Length = 1437 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 43/384 (11%), Positives = 107/384 (27%), Gaps = 30/384 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G D+ + + V++ + ++ + + +T IT Sbjct: 419 FVAFDLETTGLSAVTDKIIELSAVKM-QLGNVVDQFSEY---INPGFPLSEFTTELTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E++ +R + ++ +N+ FD + + R + Sbjct: 475 DSMVANAD-PESDVIQRFRDWV---GDAVLIGHNVTFDIGFMNAAYARYQKPAI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 GN D L R +Y S++L +A I AH A D T Sbjct: 525 GNPVIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDSETT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + W + ++ + ++ + + + + ++ P+ + A Sbjct: 572 GHIAWRLMKEAKERYDLTSHQQLNDHMTEGDAWKHGRPVHATLLVKNAVGLKHLYELVSR 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + + S + + L ++ +++ + Sbjct: 632 SNIEFFARLPRIPRSVLEQHREGLLVGTGDTGGDVIVTLIEKGYDAALEKAAYYDFIEIQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR---FKAIYNKPYTSSSQDVDSQLY 361 P D + + L + + D+ + Sbjct: 692 PTANYAPMIESGLIADTDKLHDILRDMVAIGDELDKPVVVTGDIKYTNPEDRIYRQILIA 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLS 385 +R + + ++L Sbjct: 752 TQPGNPQNRTTLPELHFKTTQELL 775 >gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 32/190 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G D+ + + ++V R + + A + GIT Sbjct: 17 YTVFDLETTGVSPQTDKVIEISAIKV-RNGQTVGEFSSL---VNPMRGIPYGATRVNGIT 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IFYRNFYDSYRWS 121 + V E + F + ++G+N FD + F+R F Sbjct: 73 DEMVADKPVFE-KVLGDFLDFVE--DDILVGHNIHDFDMKFIHRDCEAFFRMFL------ 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 GN D L + R +L DLAL I AH A D Sbjct: 124 ---GNDYIDTLPIARKC-------------LPQLGHHRLTDLALYYKISINGAHRALNDC 167 Query: 182 YATLALVWLI 191 + + Sbjct: 168 RMNQLVFERL 177 >gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95] gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95] Length = 1388 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 66/470 (14%), Positives = 140/470 (29%), Gaps = 47/470 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + A++ + V++ + + + TGIT Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKI-KNMKIVSKFHRL---VKPRKPVSNFTSNFTGIT 437 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + +E E + F ++ +N FD + R R + + + ++ Sbjct: 438 NQMLEVEKPIE-EVLPQFLSFIE---GAVLVAHNAIFDYRFIREWVRRVYNEHFEQTY-- 491 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + S+ L + + H A D T Sbjct: 492 ------------------IDTVALSKSLLTLKSYGLAKVVEELKLGSFEHHRAHEDANIT 533 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALIAP 242 + + E + K L+K ID + + P + ++ L++ Sbjct: 534 ALVFLKLIEMAKSQNVEMLSDLEK--LKKFIDFKRIQPNDTTILVKNKTGLKNLYKLVSN 591 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y+ I + MR + S G I+ Sbjct: 592 AHVKYFYRVPRILKSELSRMREGLLIGSSGTEDGEIFQTYLRGGSHDEIIEIAKFYDYLE 651 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L P+D + I ++ + + N + + + + +D Sbjct: 652 LTPLDALSDKT-----ISEEQLKKIYQDIYNLGNELNMPVVMVSNAHYLDKEDQIFYNAL 706 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 R LRT E + F D E+ + N ++ + ++ Sbjct: 707 KVGEKRKTSSAHRYLRTTDEMIEEAQRIFGD---KEIAEKIVITNTNEI---ADQIEIIK 760 Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 L +IE + +++ L+ + G+ E + + L L+ ++ Sbjct: 761 PLSNKLHPPKIENAEVEIEELAKKKAYEIYGNPLPEIVESRLNRELESIV 810 >gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] Length = 1520 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 42/401 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++++D ET G D + V+V + + F E +T Sbjct: 481 DTYIVFDIETTGFSSIKDAIIEVGAVKV-TDGKITDRFSTF---VNPKRPIPFEITNLTS 536 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + ++ + QF ++ +N FD + Sbjct: 537 ITDEMVMDSPTIDV----VLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGL------- 585 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + R + +KL +A A I N H A D Sbjct: 586 SDEFVYLDTVALARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAE 632 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E K N+ R + I+ M P H+ + L Sbjct: 633 ATAEIFVKFTEMLKKDQVGTLKEVNRYGDRNVNAIRKM-PTHHIIILAKNDIGRYNLYQL 691 Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 ++ H Y S + L + G + + E + Sbjct: 692 ISQSHMTYYARRPRIPKSLLNEHREGLLIGSACEA---------GELYQAVHEKRSAQQI 742 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360 + Y E E + + +L++ + I + Sbjct: 743 ARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDV 802 Query: 361 YDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399 + D + + + ++ L L +D L E Sbjct: 803 HFLNPDDEVYRRIIMAGKGFDDADRQPPLFLRTTDEMLEEF 843 >gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] Length = 1464 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 58/446 (13%), Positives = 117/446 (26%), Gaps = 34/446 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F Y +TGI Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIIEQFDEF---IDPGYPLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + RN Sbjct: 481 TDNHVKGAKP----LLQVLQEFQVFCQGTVLVAHNATFDVGFMNANYERNQLP------T 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + +L + + + Sbjct: 578 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V + + + L + ++ + Sbjct: 638 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIEKAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + D + + L + N D+ + + +D + Sbjct: 698 MPPAIYAPLIAKDLIKDEATVEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757 Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 I I P L + ++ L + F + A T ++ Sbjct: 758 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKELAYEVVVTNTQAMAD 817 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E KK L I+ + ++ Sbjct: 818 QIEEVEVVKKDLYTPFIDRAEEQVAE 843 >gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20] gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc citreum KM20] Length = 1437 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 55/479 (11%), Positives = 126/479 (26%), Gaps = 57/479 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G D+ + + V++ + I+ + + +T IT Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKM-QMGNVIDKFSEY---INPGFPLSDFTTELTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + +F + I+ +N+ FD + + R Sbjct: 475 DAMVANADTEE----SIVSRFRAWVRDAILVGHNVTFDIGFMNAAYSRYNQPDI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L R +Y S++L +A I AH A D T Sbjct: 525 SNPIIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDSETT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + W + ++ + + + + + ++ P+ + Sbjct: 572 GHIAWRLIKEANTTYALTDHEQLNDHMTEGDAWKHGRPVHATLLVQNTVGLKNLYKLVSR 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + V S ++ + L ++ +++ + Sbjct: 632 SNIEFFARVPRIPRSVLNQLREGLLIGTGDTSGDVIMTLIEKGRVAALQKAKYYDFIEIQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + + L + + D+ + ++ Sbjct: 692 PTANYAPMIESGLIANESQLQSILKDMVSIGDELDKTVVVTGDIKYTNP----EDRIYRQ 747 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHR 424 + + PE D F TL+ + D Sbjct: 748 ILIGTQPGNPQNRTALPENYFRTTQQLLDD----FAFM------GDTLARQLVIDNTHKI 797 Query: 425 KKML----------TRSRIEEYKNKL-----QSLSGEYKGDEGKEGLINALYEYLQWVI 468 L I ++L ++ + + GD E + + + L+ +I Sbjct: 798 ANCLETITPLKSGSYPPNIPTAGDELTRRTFEN-AKRWYGDPLPEVIQARIDQELEAII 855 >gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] Length = 569 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 26/202 (12%) Query: 4 HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G R + V V R E + + D +TG Sbjct: 31 TFCVVDLETTGGSPQKGSRITEIGAVLV-RGGEVLGEFQTL---VNPDESIPAFITVLTG 86 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT Q ++ + + F ++ +N FD + R+ Sbjct: 87 ITDQMVVQAPR----IAEALPSFLEFARGSVLVAHNAPFDTGFLRHA---------AAEL 133 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R+++LD + KL LA G H A +D Sbjct: 134 QIPWPRFEVLDTALLARRVL--------LAGEVRNCKLGTLAAHVGATTTPNHRALSDAR 185 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT+ ++ + E+ L + + Sbjct: 186 ATVDVLHHLFERLGPLGVHSLE 207 >gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R] gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316] gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 2603V/R] gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316] gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] Length = 1468 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A + Q A ++ + IE + F + +TGI Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + ++ +N FD + + R+ Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581 Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L + K + ++ L++ Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V S + L L + + Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + L + + L + Sbjct: 700 EVMPPAIYRPLVVRDLIKDEVGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411 + L G + + L + ++ L E F + A +T Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + ++ + +E K L ++ + ++ L Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848 >gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SS3/4] Length = 1376 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 59/390 (15%), Positives = 110/390 (28%), Gaps = 34/390 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G ++ + V+V R E I+ + F + + +TGI Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKV-RNGEIIDRMDEF---VNPEVPIPFDIERLTGIN 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + +N FD + + Sbjct: 471 DAMVMGADT----VDKVLPRFLEFVGDAALVAHNASFDVSFISHNAGLLGLSFDPT---- 522 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +LD + A P+ + FKL +A A G+ N H A D AT Sbjct: 523 ------VLDTVTLARALLPNLNR----------FKLDTVAKALGVSLENHHRAVDDAEAT 566 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + E K + + + + P HV + L V+ Sbjct: 567 AGIFLKFVEMLKKQHDMTNLDQLEEFSHVSDETIMKMPTYHVIILAKNDLGRVNLYRLVS 626 Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPI 302 W H +Y S + + L + L+G+ + K V Sbjct: 627 WSHLKYFSRRPRIPKSVLNQYREGLIIGSACEAGELYQAILRGVPDAELAKLVKFYDYLE 686 Query: 303 LMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + P+ + N ++ A + + + + Sbjct: 687 IQPLGNDMFMLRDEKSTVRTVDDLMDINRKIVSLGEQFNKPVCATCDVHFMDPDDAIYRK 746 Query: 360 LYDGFFADVDRQ-IMDRILRTAPEQLSTLN 388 + D LRT E L+ Sbjct: 747 ILMSGMGFKDADEQAPLFLRTTEEMLAEFE 776 >gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1406 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 69/480 (14%), Positives = 138/480 (28%), Gaps = 55/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + F ++D ET G D + V++ ++ + I++ E F +TG Sbjct: 391 DEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKLTG 446 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I +E E + +F N+ ++ +N + N Sbjct: 447 IDESMVKDAPSIE-EILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLN------- 496 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N+ D L++ R ++KL LA ++ + H A D Sbjct: 497 -VNNTVLDTLELSR-------------HLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAR 542 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + ++ +L N +DI+ + P+ HV+ + R L Sbjct: 543 ATAEIFIKTIDRLKELGVKKVKDINDILRESEVDIKKL-PVYHVTILVKDQRGLRNLYEI 601 Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 ++ + Y S + + + L ++ L L L Sbjct: 602 ISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAILSNLEEK-----KLENII 656 Query: 302 ILMPIDYCKKEHFERWGIDHKRCL--ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + + I+ E L + ++ L + Sbjct: 657 SFYDYLEVQPVGNNEFLIEKGEIKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWD 716 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + ++ L +D L E F Y + Sbjct: 717 DIYRKILMAGKGYK------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPNK 768 Query: 420 WLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + +++ + IE + +L+ L + E GD E + N L L +I Sbjct: 769 IADLIEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSIIN 828 >gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] Length = 1437 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 132/476 (27%), Gaps = 50/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G A D+ + + V++ + I F + V +T IT Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKM-VKGNVIAEFSEF---IDPGFSLSQTTVDLTSIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E +F I+ +N+ FD + + R+ Sbjct: 477 DDMVRGS-KSEKEVFTAFREF---YGDAILVGHNVTFDMGFMNEGYERHGMG------SI 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L + R +Y S++L LA G+ H A D T Sbjct: 527 TNPVIDTLTLARFLY-------------PNMRSYRLNTLAKHFGVLLEQHHRAIFDSETT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L + E+ + + + + + + ++ P V + + Sbjct: 574 GHLNRIFLEEARESYGITHADQLNDHMTDNDAWRHGRPNHAVVLVQNQTGVKNLYKLISE 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + Y S + L ++ + + Sbjct: 634 SNIHYLYRTPRVPRSVLNKYRDGLLLGTGDSSGEFWEALMQKGYAAAKTKAKYYDYIEIQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P + D R E + ++ L + Y + +Y Sbjct: 694 PSANYLPQIEGELIKDEARLRELMMQAVKIGDELNKPVVVTGDVHYLNPEDG----IYRK 749 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLSEKE 416 + P+ L+ + L PEL + N T + Sbjct: 750 ILISSQGGANPLNRHSLPD----LHFRTTQEVLDDFSWMKPELAKKLVIDN---THVVAD 802 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGE----YKGDEGKEGLINALYEYLQWVI 468 D +E K + ++++ S E G+ E + + + L +I Sbjct: 803 MIDDVEAIKSGNYPPNMPTANDEIRQKSYETAYRMYGNPLPEIVEARIEQELNSII 858 >gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] Length = 567 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G + V+V R E + P+ V +TGI Sbjct: 21 TFVVFDLETTGAPPGPSGITEIGAVKV-RGGEVLGEFATL---VNPGAPIPPQIVSLTGI 76 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E +F ++ +N FD + R + Y + + Sbjct: 77 TQAMVYDAPPIE-EVLPAFLEFI---GGAVLVAHNSGFDTSHMRAACEGHGYVWPKAT-- 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ +R D + L LAL G H A D A Sbjct: 131 -------VVCTVRLARRV--------VPRDEVGRYNLTALALLFGARTRPTHRALDDARA 175 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + + Sbjct: 176 TVDVLHGLLERVGNLGVHSLE 196 >gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SSC/2] Length = 1470 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 71/483 (14%), Positives = 133/483 (27%), Gaps = 56/483 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V++D ET G + DR + VRV + E E+ F + + + Sbjct: 440 LMDSYVVFDIETTGFNSVNDRIIEIGAVRV-VEGEIKETFSEF---VNPERPIPYKITQL 495 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT G +E + QF ++ +N FD + R R Sbjct: 496 TTITDDMVKDAGTIE----EILPQFLKFCAGSVLVAHNAGFDTGFIRENAKRLNLP---- 547 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ D L + R F L ++ I H A D Sbjct: 548 ---YDHTVVDTLGLARC-------------LMGHLGKFTLDNICKHLNIILETHHRAVDD 591 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT + + D N N LI M + + + Sbjct: 592 ATATGKIFVEFISMLKEKDITDLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNR 651 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS-HDELKGLVPVPIKEV-- 295 L++ + + + +L R + S A L+ + DE I Sbjct: 652 LVSESHLNYFNRRPRMPKSLINKYRDGLIIGSACEAGELYQALLDERSDETIANIVSFYD 711 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 +L P+ E E N ++ A + + + Sbjct: 712 YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDDA 771 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + + +Q + L + L E Y + Sbjct: 772 IYRSILLAGKGFK-----------DADQQAPLYFRTTQEMLDEFA--YLGSEKAKEVVIT 818 Query: 416 EKQDWLEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465 + + + I + L+ + + E GD+ E + + L + L Sbjct: 819 NTNKINDMIENISPIHPDKCPPVIPDSDKTLREICYNRAHEIYGDDLPERVTSRLEKELN 878 Query: 466 WVI 468 +I Sbjct: 879 SII 881 >gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA 2018] Length = 1452 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 60/481 (12%), Positives = 146/481 (30%), Gaps = 58/481 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G ++ + ++ + I+ +F + V +T I Sbjct: 427 TYCVLDLETTGFSPKTEKITEIGIMKY-ENGKVIDKFSLF---VNPEKPIPARVVEVTNI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + + ++ +N FD + ++ Y+ Sbjct: 483 TDDMVKNAETID----KVFPKMLEFIKGSVLVAHNASFDIGFLKHNAKVLGYEF------ 532 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + +A++ S+KL +A GI+ AH A DV Sbjct: 533 -DFTYLDTLSLAQAVF-------------PQYKSYKLGRIAKNLGIKVEVAHRALDDVDT 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238 T+ + ++ E + + + + + + L + A ++ Sbjct: 579 TVKVFKVMLEILKERGAKTLEDVDIYSVDEESKKEEYKKLRTYHAIILAKNYVGLKNLYK 638 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 L++ + YK I +L L S LF + L Sbjct: 639 LVSYSHLNYFYKRPRILKSLYKKYSEGLILGSACSEGELFQA-ILLGKPDEEVEDIARDY 697 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P+ + + + N ++ L A + + ++ Sbjct: 698 DYLEIQPLGNDDYLIRNGQVPNKEAIKDINRKIIELGEKLNKPVVATGDVHFIDPEDEIY 757 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 ++ + + + L L ++ L E Y R + + Sbjct: 758 RRILEAGQGFK-----------DADNQAPLYLRTTEEMLQEFS--YLGREKAYEVVVTNT 804 Query: 418 QDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 + +++ ++ + I+ + ++ + + E GD E + L + L+ + Sbjct: 805 NKISDMCEQISPISPEKCPPHIDGCEQTIKDIAYEKAHELYGDPLPEIVQQRLDKELESI 864 Query: 468 I 468 I Sbjct: 865 I 865 >gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] Length = 1444 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 50/399 (12%), Positives = 110/399 (27%), Gaps = 30/399 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G D + V++ + ++ + F P + +T I Sbjct: 403 TYVSFDLETTGLSQIDDYITEIGAVKI-KNGLEVGRLQTFIKSPKP---ISKKITELTSI 458 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E EF R+ +FF ++ +N RFD R W Sbjct: 459 TNEDIRNAPTIE-EFMPRLMEFF---GDDLLIAHNGRFDIGMLDKALERMGKSPISNPW- 513 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 D L + R S++L + + AH A D Sbjct: 514 -----IDTLPLSR-------------RLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDA 555 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ++ + K D N ++ + + ++ ++ L++ Sbjct: 556 EVLSHSFNVMLQDLIKKGFKTIDEVNDIEIEESYKHAFPYHMCVLAKTPEGLKNMFRLVS 615 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF-TSHDELKGLVPVPIKEVHLNKC 300 ++ I + R S + ++F + + + IK + Sbjct: 616 IANTKYFHQCDRIPRSELEFYREGLLFGSGCVNSKVFEIASTRDEEELREEIKFYDYIEI 675 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L Y D +R + + + ++ + + + Sbjct: 676 QPLEDAMYLVDRGKYESIDDIERIYKRIIKIAKEEKKLICATGDVHFLDKRDKVYREVFI 735 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + + + L +D L Sbjct: 736 TNSKIQINGKPHPLLVRNNPRALTPDVYLRTTDEMLECF 774 >gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] Length = 1473 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 71/483 (14%), Positives = 133/483 (27%), Gaps = 56/483 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V++D ET G + DR + VRV + E E+ F + + + Sbjct: 443 LMDSYVVFDIETTGFNSVNDRIIEIGAVRV-VEGEIKETFSEF---VNPERPIPYKITQL 498 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT G +E + QF ++ +N FD + R R Sbjct: 499 TTITDDMVKDAGTIE----EILPQFLKFCAGSVLVAHNAGFDTGFIRENAKRLNLP---- 550 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ D L + R F L ++ I H A D Sbjct: 551 ---YDHTVVDTLGLARC-------------LMGHLGKFTLDNICKHLNIILETHHRAVDD 594 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT + + D N N LI M + + + Sbjct: 595 ATATGKIFVEFISMLKEKDITDLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNR 654 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS-HDELKGLVPVPIKEV-- 295 L++ + + + +L R + S A L+ + DE I Sbjct: 655 LVSESHLNYFNRRPRMPKSLINKYRDGLIIGSACEAGELYQALLDERSDETIANIVSFYD 714 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 +L P+ E E N ++ A + + + Sbjct: 715 YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDDA 774 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + + +Q + L + L E Y + Sbjct: 775 IYRSILLAGKGFK-----------DADQQAPLYFRTTQEMLDEFA--YLGSEKAKEVVIT 821 Query: 416 EKQDWLEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465 + + + I + L+ + + E GD+ E + + L + L Sbjct: 822 NTNKINDMIENISPIHPDKCPPVIPDSDKTLREICYNRAHEIYGDDLPERVTSRLEKELN 881 Query: 466 WVI 468 +I Sbjct: 882 SII 884 >gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM 43017] gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family [Saccharomonospora viridis DSM 43017] Length = 570 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E + P+ V +TGI Sbjct: 16 TFVVVDLETTGVTPDGAGITEIGAVKV-RGGEVVGEFATL---VDPGVPIPPQIVALTGI 71 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP +E + + F + ++ +N FD + + + Y+ + + Sbjct: 72 TPAMVRSAPRIE----QVLPTFLEFVSGAVLVAHNAGFDVSFLKAACQTHGYEWPKPTV- 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + +L LA G H A D A Sbjct: 127 ----------------VCTLKLARRVLGRQETRGHRLSTLASLFGARSTPKHRALDDAKA 170 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + Sbjct: 171 TVDVLHGLLERVGPLGVQSLE 191 >gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] Length = 228 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 36/246 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D + + V+V R + +E A + I+ Sbjct: 17 YVLFDLETTGTSCIYDEVIEISAVKV-RSGKVVEEFSQL---VNPKRPIPYAASMVNHIS 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +F + + +F + ++G+N FD + R F Sbjct: 73 DEMVANEP----DFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTN--- 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +D +R +L DLA GI AH A D Sbjct: 126 ------DYVDTLRVAKLCF----------PEWRHRRLSDLAEHYGISTRGAHRALTDCKM 169 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + + ++ K+ K Q ++ I + P+ +G FG + P Sbjct: 170 NQQVFEYLAKELEKMPAA------KKQSKEKICPECGLPMKKRNGRFGEFWGC--IGYPD 221 Query: 244 AWHPRY 249 H Sbjct: 222 CRHTEN 227 >gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae BRL-230010] Length = 686 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 84/265 (31%), Gaps = 30/265 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G V ++ + AGV++ + ++I F +T I Sbjct: 420 TYVVFDIETTGLSVINNKIIEIAGVKM-KDGKEIGRYTTF---IDPHEKIPYNIQQLTNI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + +F ++ +N RFD + + Sbjct: 476 TDEMVQGAP----DIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPEL----- 526 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D L++ R + +L LA + N H A D A Sbjct: 527 -PNPSLDTLELARL-------------LFPSLKNHRLNTLADKFKVSLENHHRAIDDTVA 572 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + ++ + ++ + R + + K + + ++ L++ Sbjct: 573 LMHILNHLLQEAEEQNLTQL-NRLNDHVGKDLRNTRPFHCCIYAKDMVGKKNLYRLVS-- 629 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268 H Y V S + + + L Sbjct: 630 LSHTEYFHRVACIPKSKLIELREGL 654 >gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247] gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM 43247] Length = 595 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G D A DR + V++ R E + + P+ V +TGI Sbjct: 37 TLVVVDLETTGSDPAGDRITEIGAVKI-RGGEVLGEFATL---VDPERSIPPQIVTLTGI 92 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + F I+ +N RFD + R R D Sbjct: 93 THAMVSAAPRIE----EVLPAFIEFARGSILVAHNARFDMGFLRRNAQRLHLDFPF---- 144 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + A + +L LA + H A D A Sbjct: 145 -------------PLSLCTVTMARRILHREEAPTVRLSALADLFDVSVRPTHRALDDARA 191 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ + + E+ + Sbjct: 192 TVEVFHHLLERVGNQGVHSIR 212 >gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 264 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 56/189 (29%), Gaps = 26/189 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +++V++D ET G D + + ++V E E F A + G Sbjct: 56 DNYVVFDLETTGISAVKDDIIEISALKVKNH----EQVETFSRLVNPRRPIPAGATKVNG 111 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +E F +IG+N FD + + Sbjct: 112 ITDEMVQSEPGLEF-ILPEFLDFID--GEILIGHNIQSFDLLFLNRAADEVCRKAVLN-- 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D +D + A G + +L DLA I AH A D Sbjct: 167 -------DFIDTLFMARALL----------PGLSRHRLTDLADYFKISSEGAHRAFNDCV 209 Query: 183 ATLALVWLI 191 + Sbjct: 210 MNQICYEHM 218 >gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 1470 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 60/474 (12%), Positives = 125/474 (26%), Gaps = 35/474 (7%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +V++D ET G + Q A ++ + +E + F + Sbjct: 425 MNEATYVVFDVETTGLSAINNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSQFTTD 480 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT Q + + +F S ++ +N FD + + R+ Sbjct: 481 LTGITDQHVKGAKP----ILQVLQEFQSFCQDTVLVAHNATFDVGFMNANYERHDLP--- 533 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D L+ R +Y L L + + H A Sbjct: 534 ---KITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANY 577 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 D AT L+++ ++ + ++ + + Sbjct: 578 DAEATGRLLFIFLKEAKEKHGVNNLLDLNTKIVDNNSYKKARVKHATIYVLNQKGLKNLF 637 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 + Y V + + L L V ++ Sbjct: 638 KLVSLSNVTYFAGVARIPRTILDQYRDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYD 697 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 +MP + D + + L+ L A + Y ++ Sbjct: 698 FIEVMPPALYEPLLARELIKDEAGIQQIIKNLIEVGRRLDKPVLATGDVHYLEPEDEIYR 757 Query: 359 QLYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSE 414 ++ P L + ++ L E F AR+ Sbjct: 758 EIIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVIKNPN 817 Query: 415 KEKQDWL--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + + + E K L IE + K+ ++ E + L + + ++ Sbjct: 818 EMVERFEDVEVVKTDLYTPFIENSEEKVAEMTYEKAFEIYGNPLPDIIDLRIEK 871 >gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] Length = 1464 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 47/401 (11%), Positives = 100/401 (24%), Gaps = 30/401 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTDLTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F ++ +N FD + + R+ Sbjct: 481 TDEHVKNA-KPLEQVLQEFQDF---CQDTVLVAHNATFDVGFMNVNYERHGLP------R 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 531 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 578 TGRLLFIFINDAAEKRGVTNLQKLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 638 LSNTKYFEGVPRIPRTVLDAHREGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYDFIEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A + Y +++ ++ Sbjct: 698 MPPAIYAPLIAKEQVKDVEELHTIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIV 757 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L E F Sbjct: 758 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF 798 >gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] Length = 1456 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 47/401 (11%), Positives = 100/401 (24%), Gaps = 30/401 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 417 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTDLTGI 472 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F ++ +N FD + + R+ Sbjct: 473 TDEHVKNA-KPLEQVLQEFQDF---CQDTVLVAHNATFDVGFMNVNYERHGLP------R 522 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 523 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 569 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 570 TGRLLFIFINDAAEKRGVTNLQKLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 629 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 630 LSNTKYFEGVPRIPRTVLDAHREGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYDFIEI 689 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L+ L A + Y +++ ++ Sbjct: 690 MPPAIYAPLIAKEQVKDVEELHTIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIV 749 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L E F Sbjct: 750 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF 790 >gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] Length = 1437 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 47/378 (12%), Positives = 99/378 (26%), Gaps = 31/378 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G D+ + + V++ + IE + + +T IT Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKM-QLGNVIEKFSEY---INPGFPLSDFTTKLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E I +F ++ +N+ FD + + R Sbjct: 475 DTMVAHADTEEN----IITRFRKWIGDAVLIGHNVTFDIGFMNAAYAR------YNQTVI 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L R +Y S++L LA I AH A D T Sbjct: 525 KNPVIDTLPFTRWLY-------------PDYKSYRLGTLAKRFNINLEQAHRAIFDAETT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + W + ++ +E + + + ++ P+ + A Sbjct: 572 GHIAWRLIKEVNTRYELTRHNQLNDYMTDGDAWKHGRPVHATLLVQNAVGLKNLYKLVSR 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + V S + + L ++ +K+ + Sbjct: 632 SNIDFFARVPRIPRSILNQYREGLIIGTGDTSGDVIMTLIEKGREEALKKAKYYDYIEIQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + + + L + D+ + ++ Sbjct: 692 PTANYAPMIESELVANETKLHDILKEMVSIGETLDKPVVVTGDVKYTNP----EDKIYRD 747 Query: 365 FADVDRQIMDRILRTAPE 382 + + PE Sbjct: 748 ILIATQPGNPQNRTALPE 765 >gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 1538 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 145/480 (30%), Gaps = 59/480 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G ++ + V+V + ++ F + E +T I+ Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKV-ENGKIVDRFSTF---VNPEVPIPFEIEKLTSISD 569 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 L +E E + +F + ++ +N FD + R+ Sbjct: 570 NMVLGAPKIE-EVLPKFLEF---CSDAVMVAHNASFDMSFIRHNAMI----------QGK 615 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +LD + P+ + FKL +A I N H A D AT Sbjct: 616 SFEPTVLDTVSMARFLLPNLNR----------FKLDTVAKELRISLENHHRAVDDAGATA 665 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244 + E D N+ + I+ M P H+ + L V+ Sbjct: 666 EIFVKFVEMLKSRGIENLDELNEQSRMSVETIRKM-PTNHIIILAKNDVGRINLYRLVSD 724 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303 + Y S ++ + L + L+G+ I K V + Sbjct: 725 SNLVYYAKRPRIPKSQILKYREGLIIGSACEAGELYQALLRGVPEAEINKIVSFYDYLEI 784 Query: 304 MPI-DYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 P+ + E+ + + L+ N ++ A + + +V ++ Sbjct: 785 QPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPVCATCDVHFLDPEDEVYRRI 844 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 D + + L L ++ L E F Y + + + Sbjct: 845 IMAGKGFKDC-----------DDQAPLYLRTTEEMLRE--FEYLGSDKAEEVVITNTRKI 891 Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + ++ I L+++ + E G++ + ++ L L +I Sbjct: 892 AAMC-ERISPVRPDKCPPVIPNSDEMLRNICYNRAHEMYGEDLPKIVVERLERELNSIIS 950 >gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family [Mycobacterium sp. Spyr1] gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium sp. Spyr1] Length = 617 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 64/204 (31%), Gaps = 28/204 (13%) Query: 4 HFVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G + DR + V+V R E + P+ V + Sbjct: 21 TFVVVDLETTGGRASGDRHDAITEIGAVKV-RGGEVLGEFATL---VDPGRAIPPQIVAL 76 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F ++ +N FD + R RN Sbjct: 77 TGITSAMVYDAPRIE----SVLPSFLEFCRGAVLVAHNAGFDMGFLRAAAERNQVPWP-- 130 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + R + D A S KL LA G H A D Sbjct: 131 ----KPPVLCTVALARRV-----------LTRDEAPSVKLSALARLFGASTTPTHRALDD 175 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT+ ++ + E+ + Y Sbjct: 176 ARATVDVLHALIERVGNQGVHTYA 199 >gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK] gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 617 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 64/204 (31%), Gaps = 28/204 (13%) Query: 4 HFVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G + DR + V+V R E + P+ V + Sbjct: 21 TFVVVDLETTGGRASGDRHDAITEIGAVKV-RGGEVLGEFATL---VDPGRAIPPQIVAL 76 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F ++ +N FD + R RN Sbjct: 77 TGITSAMVYDAPRIE----SVLPSFLEFCRGAVLVAHNAGFDMGFLRAAAERNQVPWP-- 130 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + R + D A S KL LA G H A D Sbjct: 131 ----KPPVLCTVALARRV-----------LTRDEAPSVKLSALARLFGASTTPTHRALDD 175 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT+ ++ + E+ + Y Sbjct: 176 ARATVDVLHALIERVGNQGVHTYA 199 >gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 232 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 30/234 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + YD ET G + DR + A ES + + EA I Sbjct: 1 MPDLIFYDTETTGTQIDKDRIVEIAAY----NGTTGESFQTL---VNPEIPIPAEATKIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E ++ F N ++ +NN FD R+ Sbjct: 54 GITTSEVANAPK-FPEAYQQFSDFCGTDN-ILVAHNNNAFDYPLLLRECRRHGLPE---- 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D ++ + D LQ L G E NAH A DV Sbjct: 108 -----PQLRTIDSLKWAKKYRTDL----------PQHSLQYLRQVYGFEENNAHRALDDV 152 Query: 182 YATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + ++ +++ L + + + PL V + A Sbjct: 153 ITLHRVFSVLVGDLSPDQIYNLLNETCHPRVFKMPFGKYKGKPLSEVPSSYIAW 206 >gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a] gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a] Length = 580 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 63/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + VRV R E + +P+ P ITGI Sbjct: 20 TFVVVDLETTGTSAATSEITEIGAVRV-RGGEVLAEMSTL-VRPSAG--IPPMVSVITGI 75 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T EAE +F ++ +N FD + R R Y W Sbjct: 76 TDAMVATAPA-EAEVVPTFLEF---ARGAVLVAHNAPFDLGFLRAAAQRCGYPPPAWEH- 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD +R D A +L LA H A AD A Sbjct: 131 --------LDTLRIARRL--------VSRDEAPDCRLASLARLFRSSTEPCHRALADARA 174 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + Sbjct: 175 TVDVLHGLFERLGNAGVRTLE 195 >gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3] gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3] Length = 584 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 60/201 (29%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D + VRV R + P +TGI Sbjct: 29 TFVVFDLETTGTSPGRDEITEIGAVRV-RGGRILAEMATL---VRPGVGIPPMVSVLTGI 84 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + F ++ +N FD + R Y W + Sbjct: 85 TDVMVATAPP----VTQVLPTFLEFARGAVLVAHNAPFDLGFLRAAVELCGYPVPVWEY- 139 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R + D + +L LA H A AD A Sbjct: 140 -----LDTLRIARRV-----------VTRDESPDCRLTSLASLFRSPVEPRHRALADARA 183 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + Sbjct: 184 TVDVLHGLFERLGNAGVTTLE 204 >gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL 2338] gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea NRRL 2338] Length = 572 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A D + V+V R E + + + P V ITGI Sbjct: 24 TFVVVDLETTGGSNAQDAVTEIGAVKV-RGGEVVGEFQTL---VDPERDIPPSVVTITGI 79 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + F ++ +N FD + R R + Sbjct: 80 TEAMVRDAPRLD----SVLPAFLEFCRGSVLVAHNAPFDTGFLRAGCERLGLRWPKPK-- 133 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ +R D +++L LA G H A D A Sbjct: 134 -------VVCTVRLARRVL--------TRDETPNYRLGTLAGVLGARTEPVHRALDDARA 178 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + + Sbjct: 179 TVDVLHALLERLGPIGVRTLE 199 >gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] Length = 186 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 55/191 (28%), Gaps = 26/191 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T+ +V+ D ET G A DR + VRV +T Sbjct: 16 TDDYVVVDLETTGISPARDRIIEIGAVRV-EHGTVTAEYSKL---VNPGRPVGGFITGLT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + +EA +T I +N FD + + R Sbjct: 72 GISDEMVGNASPIEA-VLPDFLAHLRPSDT--IVAHNANFDINFLYDNCMRTLGKP---- 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D +D +R A +L DL GI H +D Sbjct: 125 -----FSYDFIDTLRLSRALF----------PQERQHRLVDLIQRFGIADEEEHRGLSDA 169 Query: 182 YATLALVWLIR 192 T+ ++ Sbjct: 170 LQTVECYERMK 180 >gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427] gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427] Length = 1468 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 48/391 (12%), Positives = 112/391 (28%), Gaps = 34/391 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +V++D ET G ++R + V+V + +++ F + + Sbjct: 438 LMESYVVFDLETTGFSPKMNRIIEIGAVKV-VGGQIVDTFSEF---VNPKVPIPYQIEKL 493 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + + +E + QF + C++ +N FD + Sbjct: 494 TGINDRMVMEAETIEV----LLPQFLAFCEGCVMVAHNADFDMSFIEANAKEQGL----- 544 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + + R +FKL ++A I N H A D Sbjct: 545 --AADFTVMDTVALARI-------------LMPHLGNFKLNNVAKHLDISLENHHRAVDD 589 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN---T 237 AT + E + D N + + D P H + Sbjct: 590 ATATGEIFVRFIEMLQEKGVTTLDAIN-DMVEISPDYIKKLPTYHGVILVKNEIGRINLN 648 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEV 295 L++ + + +L R + S A +F + ++ + + + Sbjct: 649 RLVSASHLDYFNRRPRMPKSLIQKHREGLIIGSACEAGEIFQAILREKEETELARLVSFY 708 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + + + + + N ++ + A + + + Sbjct: 709 DYLEIQPIGNNSFMLRSDKYTAETEEDLRQYNKRVVELGEHYNKPVVATCDVHFLDPEDE 768 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLST 386 + ++ D + E++ Sbjct: 769 IYRRIIMAGKGFKDADDQPPVYLRTTEEMLE 799 >gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 1417 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 58/391 (14%), Positives = 120/391 (30%), Gaps = 39/391 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F ++D ET G D ++ + V V R E +E + F P+ +TGIT Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIV-RNGEVVEEFDTF---VKPGKPITPKITELTGIT 452 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E E +F ++ +N FD + + R+ Sbjct: 453 NEMVADAPG-EKEALEAFLRF--ADGRILVAHNAHAFDIRFLKAAAKRSGI-------SF 502 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + +A+Y + +K + + AH A D A Sbjct: 503 EPTYIDTLTMAQAMYPGLHN-------------YKQGTINKHLELPSYEAHRACEDSAAL 549 Query: 185 LALVWLIREKKPKLFEYLYDYRN-----KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + ++ + + N ++ K + L+ + ++ + Sbjct: 550 GRIFCVMLSDLAEKEVTTVEGINTGLGGNREVLK----KKYFHLIILVKNQMGLKNLYKI 605 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ + +K + +L R L S A L+ + E + + K Sbjct: 606 VSEAHVNYFFKKPRVPRSLLNKYRDGLILTSACEAGELYRAVVEGRSYEELK-KIASYYD 664 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + + + N T++R +L A + +T + Sbjct: 665 VLEIQPLGNNEYMVRDGKVESEEVIKDFNRTIIRLGEDLHKPVIATGDVHFTEPEDAIYR 724 Query: 359 Q-LYDGFFADVDRQIMDRILRTAPEQLSTLN 388 L G RT + L + Sbjct: 725 TVLQAGNGFKDADTQPPLFYRTTEDMLKQFS 755 >gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] Length = 1036 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G A + Q A ++ + IE + F + +TGI Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F + ++ +N FD + + R+ Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581 Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L + K + ++ L++ Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V S + L L + + Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + L + + L + Sbjct: 700 EVMPPAIYRPLVVRDLIKDEVGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411 + L G + + L + ++ L E F + A +T Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816 Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 + ++ + +E K L ++ + ++ L Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848 >gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] Length = 1437 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 66/476 (13%), Positives = 151/476 (31%), Gaps = 44/476 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I+D ET G D+ Q + V++ + +++ + F + + + +TGIT Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKM-KNGVVLDTFDQF---INPGFPLSEQTINLTGIT 465 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 EAE + QF T + G+N I+FD + + + Sbjct: 466 DDLVKNS-KPEAEVLKMFQQF--YAGTILAGHNVIKFDYGFVNHALAVHKLP------KI 516 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ R +Y + L L+ + + H A D AT Sbjct: 517 NTLVIDTLNLARWLY-------------PNFGRYTLDFLSKKFSVNLEHHHRAIDDSTAT 563 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALIAP 242 L+ + ++ + + +YD + + P L + ++ L++ Sbjct: 564 GMLLHIFLKEAEENYGVVYDEQLNEHTDDHESWRQTRPTHLSILVKNQTGLKNLYKLVSE 623 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y+ S + +L R + S + LF + + + + Sbjct: 624 SNINYHYRVSRVPKSLLTKYRNGLLVGSGDIGGNLFDTLAREGIDKAIELADSINYDYIE 683 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P++ + + D + + + ++ + + + + +D + Sbjct: 684 VQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTEKDRIYRTIL 743 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 T + D E F + + + + + Sbjct: 744 LNSKIARSAAAGETRYTLADLSMKKTQHLLD----EFAF--LGKEKAYEIVVENSHKINQ 797 Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 KK L+ +IE ++ L+ + E G+ + + L L +I Sbjct: 798 MIDDVQPLKKGLSTPKIEGSEDILRKKAYARAKEMYGNPLPDLIQKRLDRELNAII 853 >gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL] gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis OL] Length = 1402 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 145/477 (30%), Gaps = 54/477 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D ++ + V++ + E F + +TGI Sbjct: 389 TFVVVDVETTGFDSQKNKIIEIGAVKI-ENGQITERFSTF---VDPEGKIPVRISELTGI 444 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + I +F + ++ +N +FD + + + Sbjct: 445 YQDMVDKAPK----LRDAILEFEKFASGSVLVAHNAQFDIGFLKKAYQECGI-------I 493 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L++ R G +S KL +A +E + H A +D Sbjct: 494 FDYTYIDTLELSR-------------RLLTGLSSHKLNKVAEFLNVELRHHHRADSDAET 540 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242 T + + E+ N + D+++ + + ++ L++ Sbjct: 541 TAGIFTSLMERLKVRGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 YK I + ++ + S + +F + E K + K Sbjct: 601 SHLEYFYKRPRIPKSFLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIATFYDFLE 659 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 +MP++ E + D + E N + + L A + Y Q V Q+ Sbjct: 660 IMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 E L +D L E F Y + + + + Sbjct: 720 KHNQGYN-----------DVENDPQLYFRTTDEMLKE--FEYLGPDACYEVVVENTNKIA 766 Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + +IE + ++ ++ + E GD E + L + L +I Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823 >gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruminococcus torques L2-14] Length = 231 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 59/204 (28%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ +D ET G + ++V + ++ F D P I Sbjct: 1 MLKSYIAFDLETTGLSPQEHEIIEIGALKVRE-GKVVDRFMEF---VHPDKPITPMITNI 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT E IH F S ++ +N+ FD + + R Sbjct: 57 THITNDMVAGA-RSCPEV---IHDFLSFCEDDVLIGHNVMFDYSFVKCSAVREGL----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R ++ S L L IE+ AH A D Sbjct: 108 --TFEKMGIDTLKIARKVH-------------KDFESKSLGALCDYYHIENPAAHRAYYD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + ++ Sbjct: 153 ALATAKLYQTLAHYFEPQDPKVFQ 176 >gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1] gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 588 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V++ R E I P V ITGI Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKI-RGGEVIAEMATL---VDPGRSIPPHIVEITGI 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E R + F ++ +N FD + + Sbjct: 79 TTAMVIDAPRIE----RVLPAFLEFARGAVLVAHNAPFDTGFLKAAASATDTPW------ 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ +L ++ D A S KL LA + H A D A Sbjct: 129 ---PKFTVLCTVKLARRVL--------SRDEAPSVKLSSLARLFDVGTTPTHRALDDARA 177 Query: 184 TLALVWLIREKKPKLFEYLY 203 T+ ++ + + + Sbjct: 178 TVDVLHALIARVGNQGVHSL 197 >gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] Length = 1532 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 55/392 (14%), Positives = 99/392 (25%), Gaps = 35/392 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G DR + VR+ + F +T Sbjct: 498 DSFVVFDIETTGFSAEKDRIIEIGAVRM-EGGRITDRFSSF---VNPGRPIPFRITELTS 553 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +E + F + I+ +N FD + R R ++ Sbjct: 554 IRDDMVIGSAGIE----EVLPDFLAFSQGAIMVAHNADFDMGFIRQNCLRLHLEAPAT-- 607 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D + P KL LA A I+ + H A D Sbjct: 608 --------YMDTVAMGRYLMPSLHN----------QKLNTLAKALKIDPGHHHRAVDDAE 649 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV-SGMFGASRSNTALIA 241 AT + + N N I+ M + R N + Sbjct: 650 ATAHIFEKFIQMFRDRGMNELSDINANARMSDEVIRKMHANHCILIARNDIGRINLYKLT 709 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHL 297 + H R+ S + + L + G P I Sbjct: 710 SL-SHLRFFQRQAKIPKSLVEKYREGLIIGSACEAGELFQALEGGRPPQEISRIVSFYDY 768 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDV 356 + + + + + + N ++R + A + + + Sbjct: 769 LEIQPIGNNRFLLEADNDNIQTEEDLRDFNRRIVRLGEDFHKPVCATGDVHFLNPEDEIY 828 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388 + G L T E L + Sbjct: 829 RRIIQVGKGFKDADHQPPLFLHTTEEMLEEFS 860 >gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4] gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4] Length = 588 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V++ R E I P V ITGI Sbjct: 23 TFVVVDLETTGARPGEDAITEIGAVKI-RGGEVIAEMATL---VDPGRSIPPHIVEITGI 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E R + F ++ +N FD + + Sbjct: 79 TTAMVIDAPRIE----RVLPAFLEFARGAVLVAHNAPFDTGFLKAAAAATDTPW------ 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ +L ++ D A S KL LA + H A D A Sbjct: 129 ---PKFTVLCTVKLARRVL--------TRDEAPSVKLSSLARLLDVGTTPTHRALDDARA 177 Query: 184 TLALVWLIREKKPKLFEYLY 203 T+ ++ + + + Sbjct: 178 TVDVLHALIARVGNQGVHSL 197 >gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 30/197 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I+D ET G DR + A VRVDR + + +AV + IT Sbjct: 9 FTIFDVETTGMSPVRDRIVELAAVRVDRDGS-LSRFQSL---VNPGVRIPAQAVAVHHIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F+R F + + +N RFD + + R ++ Sbjct: 65 DDMVAGAPS----FARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGK--- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDAKADV 181 LD +R + P+ S+ LQ L +E NAH A ADV Sbjct: 118 ------TLDSLRLLKTTFPNL----------PSYNLQSLRAYFQLETEKGMNAHRAGADV 161 Query: 182 YATLALVWLIREKKPKL 198 T ++ + K ++ Sbjct: 162 EWTRQVLEIALSKAIRM 178 >gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO] Length = 663 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 82/265 (30%), Gaps = 27/265 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D + A V++ + IES + F + V +TGI Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E E R +F I+ +N FD + + R Sbjct: 482 TDGMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 534 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y F L L+ G+ H A D A Sbjct: 535 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L W+ ++ LY + + + + P + Sbjct: 579 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268 + Y + V S ++ ++L Sbjct: 639 MSNVEYFERVPRIPRSQLKKMRENL 663 >gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] Length = 921 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 28/221 (12%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + FVI D ET G DR Q V V + IE FF + P Sbjct: 1 MKDRFVIMDLETTGNVPKKGDRIIQLGMVVV-ENGQIIERFSSFF---NPERDIPPFVQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I Q V AE + ++ +N+ FD + + + + + Sbjct: 57 LTNINEQMVADAPV-FAEEAAKVVDMLQQS---YFVAHNVSFDLQFLQEELHMAGFPPF- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R ++ A S+KL DLA I H H A + Sbjct: 112 -----SGPTIDTVELARIVF-------------PDAESYKLADLAKLLCIAHDQPHHADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 D T L + ++ +L + + D+ ++ Sbjct: 154 DAEVTAKLFIALLDRLRQLPLVTLQHLKRLSAYLKSDLYSL 194 >gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] Length = 921 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 28/221 (12%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + FVI D ET G DR Q V V + IE FF + P Sbjct: 1 MKDRFVIMDLETTGNVPKKGDRIIQLGMVVV-ENGQIIERFSSFF---NPERDIPPFVQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I Q V AE + ++ +N+ FD + + + + + Sbjct: 57 LTNINEQMVADAPV-FAEEAAKVVDMLQQS---YFVAHNVSFDLQFLQEELHMAGFPPF- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R ++ A S+KL DLA I H H A + Sbjct: 112 -----SGPTIDTVELARIVF-------------PDAESYKLADLAKLLCIAHDQPHHADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 D T L + ++ +L + + D+ ++ Sbjct: 154 DAEVTAKLFIALLDRLRQLPLVTLQHLKRLSAYLKSDLYSL 194 >gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159] gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159] Length = 1465 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 61/474 (12%), Positives = 126/474 (26%), Gaps = 35/474 (7%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +V++D ET G + Q A ++ + +E + F + Sbjct: 420 MNEATYVVFDVETTGLSAINNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSQFTTD 475 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT Q S+ + +F S ++ +N FD + + R+ Sbjct: 476 LTGITDQHVKGAKP----ISQVLQEFQSFCQDTVLVAHNATFDVGFMNANYERHDLP--- 528 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D L+ R +Y L L + + H A Sbjct: 529 ---KITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANY 572 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 D AT L+++ ++ + ++ + + Sbjct: 573 DAEATGRLLFIFLKEAKEKHGVNNLLDLNTKIVDDNSYKKARVKHATIYVLNQKGLKNLF 632 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 + Y V + + L L V ++ Sbjct: 633 KLVSLSNVTYFAGVARIPRTILDQYRDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYD 692 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358 +MP + D + + L + L A + Y ++ Sbjct: 693 FIEVMPPALYEPLLARELIKDEAGIQQIIKDLIEVGRRLDKPVLATGDVHYLEPEDEIYR 752 Query: 359 QLYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSE 414 ++ P L + ++ L E F AR+ Sbjct: 753 EIIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVIKNPN 812 Query: 415 KEKQDWL--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + + + E K L IE + K+ ++ E + L + + ++ Sbjct: 813 EMVERFEDVEVVKTDLYTPFIENSEEKVAEMTYEKAFEIYGNPLPDIIDLRIEK 866 >gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599] gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599] Length = 967 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 28/191 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 N ++ D+ET G D Q V +D + ES P + Sbjct: 1 MNRLLVVDFETTGSHPRQGDSIIQIGAVAID-DGQITESFSTL---IHPGQDIPPFITQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E F + + +N FD + + Y + Sbjct: 57 TGITNEMVADAPSLE----EVFPDFLRLLDGRAFVAHNASFDLQFLQEALLSQGYYA--- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +LD + S++L +LA IEH N H A +D Sbjct: 110 ------FDGYVLDTVELSRVLL----------PMQNSYRLGELASELEIEHDNPHQADSD 153 Query: 181 VYATLALVWLI 191 AT L + Sbjct: 154 ALATAQLFLHL 164 >gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1407 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 64/481 (13%), Positives = 141/481 (29%), Gaps = 53/481 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + F ++D ET G D + V++ ++ + I++ E F + Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +E E + +F N+ ++ +N + N + Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +LD + D ++KL LA ++ + H A D Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLADHLQVKLEHHHRAVDD 541 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + ++ +L N +DI+ + P+ HV+ + + L Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600 Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298 ++ + Y S + + + L ++ + L ++ + Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + + E + ++ + D Sbjct: 661 DYLEVQPVGNNEFLIEKGEVKSVEELREINQKIYLLGKKYNKLVVATGDVHFLDPWDDIY 720 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + ++ L +D L E F Y + Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768 Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + +++ + IE + +L+ L + E GD E + N L L +I Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRRLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828 Query: 469 P 469 Sbjct: 829 N 829 >gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] Length = 1451 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 55/387 (14%), Positives = 106/387 (27%), Gaps = 31/387 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D ET G A DR + VR+ E + F + + +TGI Sbjct: 434 YISFDLETTGLSAANDRITEIGAVRI-HNGEITDVFNTF---VNPERPIPAKITELTGIN 489 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E E +F ++ +N FD + + + R+ D Sbjct: 490 DSMVIDAPK-EKEAVEAFLEFCGKEP--VLLAHNAPFDTSFIQAVAARHNLDF------- 539 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D + + RA+ G + KL +A + N H A D Sbjct: 540 SNTYLDTVPMCRAM-------------LPGIKNHKLDTVAKHLKLAPFNHHRASDDAMVL 586 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + ++ ++ + ++ N DI+ + + + ++ Sbjct: 587 ANIFLVLLQRLQEDYQIG-KVSQINTALAGGDIKKLRSYHQIILVKNSTGLKNLYKLISY 645 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCPIL 303 H Y S M+ + L + + G + + Sbjct: 646 AHLDYFYKKPRIPKSVLMKHREGLLIGSACEAGELFRAIVSGQPWNELVSIAKFYDYLEI 705 Query: 304 MPIDYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P+ + ++ E + Q + D L Sbjct: 706 QPLGNNMFMLRDGTVQTEEQLREFNRTVIKLGQELNKPVVATCDVHFMDPHDSDYRKILM 765 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLN 388 G Q RT PE L Sbjct: 766 AGQGFTDADQQAPLYYRTTPEMLQEFA 792 >gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp. pallidum str. Chicago] Length = 215 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 66/212 (31%), Gaps = 25/212 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F +D ET G DR + V DR+ I D P+ I IT Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFDRKG-IIARFSTL---IFPDRAIPPDVSKINHIT 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E +F ++ +N FD + S Sbjct: 71 DDMLVNKPR-FCEIVSDFSRFIK---GTVLVAHNANFDVEFLNAEL------SLCKKQPL 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + +A++ ++LQ+LAL G+ AH A+ D Sbjct: 121 SHKVVDTYAMAQAVFPGLGRHQ-----------YRLQNLALQFGLTVHAAHRAEDDARVC 169 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 + L + K + ++ ++KLI Sbjct: 170 MELFTTMIAHHAKQNGHCVNHAQSPTIKKLIQ 201 >gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] Length = 1424 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 55/446 (12%), Positives = 118/446 (26%), Gaps = 34/446 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 385 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSAFTTELTGI 440 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ + Sbjct: 441 TDNHVKGA-KPLVQVLQEFQEF---CQGTVLVAHNATFDVGFMNANYERHQLPTIL---- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 493 --QPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 537 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + +L + + + Sbjct: 538 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 597 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V + + + L + ++ + Sbjct: 598 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 657 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + D + + L + N D+ + + +D + Sbjct: 658 MPPAIYAPLIAKGLIKDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 717 Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 I I P L + ++ L + F + A T ++ Sbjct: 718 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMAD 777 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E KK L I+ + ++ Sbjct: 778 QIEEVEVVKKDLYTPFIDRAEEQVAE 803 >gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] Length = 1464 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 55/446 (12%), Positives = 117/446 (26%), Gaps = 34/446 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CQGTVLVAHNATFDVGFMNANYERHQLP------T 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + +L + + + Sbjct: 578 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + Y + V + + + L + ++ + Sbjct: 638 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 MP + D + + L + N D+ + + +D + Sbjct: 698 MPPAIYAPLIAKDLIKDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757 Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 I I P L + ++ L + F + A T ++ Sbjct: 758 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMAD 817 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442 E KK L I+ + ++ Sbjct: 818 QIEEVEVVKKDLYTPFIDRAEEQVAE 843 >gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 574 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G + V+V R E + P +TGI Sbjct: 20 TFVVFDLETTGVSAGEHAITEIGAVKV-RGGEVLGEFGTL---VDPGSPIPPFISVLTGI 75 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + F + +N FD + + + Y Sbjct: 76 TDTMVVAAPKIE----SVLPSFLEFAEGTTLVAHNAGFDLGFIKAACAAHGYPPPA---- 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D + D A + KL LA + H A AD A Sbjct: 128 -----HPVVDTVVLARKLL--------TRDEAPNCKLSTLARIF-SKTEPRHRALADAQA 173 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + + Sbjct: 174 TVDVLHALLERAGSFGVHTLE 194 >gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] Length = 1484 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 48/403 (11%), Positives = 110/403 (27%), Gaps = 43/403 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + V+V + + + VF +T Sbjct: 451 DDYVVFDLETTGFSPIHDAIIEIGAVKV-SKGKISDHYSVF---VNPQRPIPLRITELTS 506 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I +E + +F S C + +N FD + R ++ Sbjct: 507 IDDSMVADAKSIE----EILPEFLSFCEGCSLVAHNAEFDVSFIEENAKRQGFE------ 556 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +LD ++ D + FKL + I+ + H A D Sbjct: 557 ----TDFTVLDTVQMARLLLTDLNK----------FKLNTVCKRLNIKQEHHHRAVDDAR 602 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLR--KLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + E + + N LI + + + L+ Sbjct: 603 VTAEVFLRFVEMLEEQDVHTLAKLNDMGAMSPDLIKKAPSYHGIILVKNETGRINLNRLV 662 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298 + + + +L R L S A LF + + + + ++ Sbjct: 663 SASHLDYFNRRPRMPESLIQKYREGLILGSACEAGELFQAVIRGKSEEELAELVRFYDYL 722 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + + + + N ++ A + + + + Sbjct: 723 EIQPIGNNMFMLESDRYEAKTVEDLQNYNRKIVELGERYHKPVVATCDVHFLNPEDEQYR 782 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 ++ + + + L ++ L E + Sbjct: 783 RILMAGKGF-----------SDADNQAPLYFRTTEEMLEEFAY 814 >gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 1407 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 64/481 (13%), Positives = 141/481 (29%), Gaps = 53/481 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + F ++D ET G D + V++ ++ + I++ E F + Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +E E + +F N+ ++ +N + N + Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +LD + D ++KL LA ++ + H A D Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLAEHLQVKLEHHHRAVDD 541 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + ++ +L N +DI+ + P+ HV+ + + L Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600 Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298 ++ + Y S + + + L ++ + L ++ + Sbjct: 601 EIISKSNLEYFHRTPRLPKSLLISMREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + + E + ++ + D Sbjct: 661 DYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDDIY 720 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + ++ L +D L E F Y + Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768 Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + +++ + IE + +L+ L + E GD E + N L L +I Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRRLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828 Query: 469 P 469 Sbjct: 829 N 829 >gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] Length = 1421 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 61/487 (12%), Positives = 125/487 (25%), Gaps = 74/487 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D+ET G D + V+ +++ D E +TGI Sbjct: 408 TYVVLDFETTGFSPQTDEIIEIGAVKF-INGMEVDRFGTL---VKPDKEIPFEVSKLTGI 463 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + F + Sbjct: 464 TLDMVKDAPDA-RQALAALREFI---GDAVLVAHNAAFDLSFLKVGFRKYLQVEVTNQ-- 517 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L R + KL L IE N H A D A Sbjct: 518 ----VVDTLGTARV-------------LLPHLKNHKLDTLVKEFKIELANHHRAVDDAAA 560 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L ++ K + ++ D + + ++ LI+ Sbjct: 561 TGKLWQVLLTKAVEQGAQDLAALSQLGQGVSTDKLRSRHVTILVKDQVGLKNLYQLIS-- 618 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV----HLNK 299 H +Y ++ + L + L G ++E+ + Sbjct: 619 LSHLKYYHRQPRIPRHELIKYREGLLVGSACEAGEIFQALLSGCSQEELEEMAAFYDFLE 678 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 L ++ + D K + + + + + Sbjct: 679 IQPLGNNEFLLRSGQVGSQEDLKNLNRRIIDIGNKLGIPVVATGDVHFLNPEDEIYRRIL 738 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--------------RYRA 405 + F + + L +D L E + R A Sbjct: 739 MAGKGFD-------------DADNQAPLYFKTTDEMLEEFSYLGEATARQVVITNPRMIA 785 Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALY 461 + + L IE + ++ + + E G+ E + + Sbjct: 786 ----------DMVQTFKPIPDELHPPIIEGAEQQITEMTLRRARELYGNPLPEIVQQRID 835 Query: 462 EYLQWVI 468 + L+ +I Sbjct: 836 KELKSII 842 >gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] Length = 918 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 27/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D ET G D +DR QF V V + + I D + + Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRF---AADINPDRRISKQIQRL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT Q+ + E + + I+ S NT + +N FD ++ N F R Sbjct: 57 THITNQQVSKAPYFE-DVADTIYNLLS--NTIFVAHNIY-FDYHFLSNEFVRCGLPPL-- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D + F +SF+L DLA + G H N H A +D Sbjct: 111 -------SLPGIDTVELAQVFL----------PTESSFRLGDLADSIGFRHDNPHQADSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 T AL I +L Sbjct: 154 AEVTAALFLYIEAIMRELPRTTLK 177 >gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20] gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20] Length = 918 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 27/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D ET G D +DR QF V V + + I D + + Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRF---AADINPDRRISKQIQRL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT Q+ + E + + I+ S NT + +N FD ++ N F R Sbjct: 57 THITNQQVSKAPYFE-DIADTIYNLLS--NTIFVAHNIY-FDYHFLSNEFVRCGLPPL-- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D + F +SF+L DLA + G H N H A +D Sbjct: 111 -------SIPGIDTVELSQVFL----------PTESSFRLGDLADSIGFRHDNPHQADSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 T AL I +L Sbjct: 154 AEVTAALFLYIEAIMRQLPRTTLK 177 >gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056] Length = 866 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 58/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +F ++ +N FD + + R+ Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L I + H A D A Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + + Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L + V ++ + Sbjct: 636 LSNTKYFEGVPRIPRTVLDTHREGLILGSACAEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + + D K + L+ L A N Y +++ ++ Sbjct: 696 MPPAIYEPLIAKEQIKDQKELQTIIRNLIEVGERLGKPVLATGNVHYIEPEEEIYREIIV 755 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414 P L + ++ L E F + P+ L Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 E + +E K L I++ + + L Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842 >gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10] Length = 918 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 27/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D ET G D +DR QF V V + + I D + + Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRF---AADINPDRRISKQIQRL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT Q+ + E + + I+ S NT + +N FD ++ N F R Sbjct: 57 THITNQQVSKAPYFE-DIADTIYNLLS--NTIFVAHNIY-FDYHFLSNEFVRCGLPPL-- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D + F +SF+L DLA + G H N H A +D Sbjct: 111 -------SIPGIDTVELAQVFL----------PTESSFRLGDLADSIGFRHDNPHQADSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 T AL I +L Sbjct: 154 AEVTAALFLYIEAIMRQLPRTTLK 177 >gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] Length = 1415 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 62/477 (12%), Positives = 131/477 (27%), Gaps = 55/477 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G + D + V+V R + I+ F +TGI Sbjct: 404 YVVTDIETTGLSLDADEIIEIGAVKVYR-GQIIDRFHSF---VNPGRPISSHITNLTGIN 459 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F I +N FD + R + Sbjct: 460 NAMVSQAPP----VKDVMSDFLRFIGNGIFVAHNAEFDAGFIRRDCKKFGM-------KF 508 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L++ + +L +A I + H A D T Sbjct: 509 DNKVMDTLNLS-------------ALVFPELKNHRLDTIAKKFNINMGSHHRAGDDANTT 555 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ + +K + N+ + + + ++ V R L++ Sbjct: 556 ALILIELLKKLKEQGIDDLSMINQVNKKATQYLNSYHAIILVKNS-QGLRDLYKLVSISH 614 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Y+ I +L R + S A LF S + V + Sbjct: 615 LEYFYRHPRIPKSLLKKYREGLIVGSGCEAGELFQSLI-YHHSDKDIERIVFFYDFLEIQ 673 Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 P+ K + + ++ E N + + + + + + ++ Sbjct: 674 PLQNNKFLIEKGILSNEEKLKEINKRIYQLGKKYNKPVVITGDVHFLNPEDETYRKILLT 733 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQD 419 D + + E++ RY + + + Sbjct: 734 VQGYRDNNLDSGLYLKTTEEMLDEC-------------RYLGEEAAKEVVIENPNRIADE 780 Query: 420 WLEHRK---KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + K L +IE ++ ++ + E G+E E + + L ++ Sbjct: 781 IEDGIKPVPDELYPPKIEGADEEIINMTYNRAKEIYGEELPEIVKKRIERELNSIVN 837 >gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] Length = 1151 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 61/484 (12%), Positives = 131/484 (27%), Gaps = 53/484 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D D+ + V++ R E I F + P+ +T IT Sbjct: 117 YVVFDIETTGFDPFNDKIIEIGAVKM-RGREIIGEFSEF---VNPEIPIPPKITELTTIT 172 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + +F + +N +FD + + + Sbjct: 173 DEMVANAEKIE----TVLPRFLEFCTDTTVVAHNAKFDVGFIKQKTIEQGLE-------Y 221 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D L + R + + L +L GI H A D AT Sbjct: 222 SPSVIDTLPLART-------------LLPDSRGYGLANLVKYFGITLETHHRAVDDAKAT 268 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + N + + + + + ++ V G + Sbjct: 269 AEVFQKFLNMILSKGILKLIEINTDLQPNIQNSETLNTMILVKNQAGLRDLYELVSRSNI 328 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDL----DSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + I L MR + + + K + ++ Sbjct: 329 EFFGMRRPRIPKTLLNSMRENLLIASSASASERNKGELVNLYLRGAEKDDIEEKARFYDY 388 Query: 301 PILMPIDYCKKEHFE--RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P + + + E + +++ + ++ + Sbjct: 389 IEIHPHTNYADMVEKTSKEIESYDIIKEMNKYFYELGKSQNKIVVATGDTHYLEEREAIN 448 Query: 359 Q--LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416 + L G + + + L ++ L F Y + + Sbjct: 449 RNVLLLGSGTMWKTETSEGVRGYEFFDR-KLYFKTTEEILE--SFNYLGEEAAQEVVVEN 505 Query: 417 KQDWLEHRKKM------LTRSRIEEY--------KNKLQSLSGEYKGDEGKEGLINALYE 462 + +++ +IE +KL+ L GE + KE + L Sbjct: 506 THKINDMIEQVRPIPTGFYPPKIEGAEDEVRKMTYSKLKELYGENIDPDLKERVEKELNS 565 Query: 463 YLQW 466 +Q Sbjct: 566 IIQN 569 >gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 476 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 28/195 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D ET G + DR + A VR+ +++ P + Sbjct: 1 MLPCYVLLDLETTGGNPVHDRITEIAAVRI-ENGQEVARWSTL---VNPGCSISPFIQHL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E ++ + + ++ +N+RFD + N R Sbjct: 57 TGISNAMVRGAPGFET-VAQHLLALL---DGAVLVAHNVRFDHGFLLNELARL------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + R L +R L + +GI + H A D Sbjct: 106 ---DVALRVKTLCTVRLSRLLY----------PQHKGHGLDAIMQRHGIRTLERHRAMGD 152 Query: 181 VYATLALVWLIREKK 195 V A + + R++ Sbjct: 153 VEVMQAWLQIARQEH 167 >gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] Length = 1512 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 50/401 (12%), Positives = 107/401 (26%), Gaps = 43/401 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G ++ + V+V + F + +T Sbjct: 487 ETFVVFDLETTGFSPDKNKIIEIGAVKV-VGGVITDRFSTF---VNPEVPIPFRIEELTS 542 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +E + +F I+ +N FD + + + Sbjct: 543 IKDDMVIDAPKIE----EILPEFMKFCEGAIMVAHNAEFDMSFIKKNCKDQGIE------ 592 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + ++D + P+ + FKL +A A + N H A D Sbjct: 593 ----REFTIIDTVALARILLPNLNR----------FKLDTVAKALNVSLENHHRAVDDAA 638 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG--ASRSNTALI 240 T + E + D N + M + + L+ Sbjct: 639 CTAEIFVKFIEMLKERGMENLDDVNHMVSTSPETVMKMPTYHAIILATNDIGRINLYRLV 698 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298 + K + + R L S A L+ + + + +K Sbjct: 699 SLSHLTYYNKRPRVPKSEFVKYREGLLLGSACEAGELYRAIVGGRPQEEIIRLVKFYDYL 758 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + L ++ + E + N + R A + + ++ Sbjct: 759 EIQPLGNNEFMLRSDKEPVNTMEELQDINRRICRLGEEFNKLVVATCDVHFLDPEDEIYR 818 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ ++ + L L ++ L E Sbjct: 819 RIIMAGKGFK-----------DADEQAPLYLRTTEEMLKEF 848 >gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977] gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium abscessus] Length = 600 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V+V R E + P+ V +TGI Sbjct: 27 TFVVVDLETTGGSAENDAITEIGAVKV-RGGEVLGELATL---VDPQRSLPPQIVRLTGI 82 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ + F ++ +N FD + + + D + Sbjct: 83 TSAMLVDAPP----IAQVLPAFLEFARGAVLVAHNAGFDIGFLKAAARQCGIDWPQP--- 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +L +R D A L LA G H A D A Sbjct: 136 ------AVLCTVRLARRVL--------SRDEAPRVSLGALAQLLGASTTPNHRALDDARA 181 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 182 TVDVLHAL 189 >gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] Length = 1426 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 54/399 (13%), Positives = 118/399 (29%), Gaps = 39/399 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ FV++D ET G D+ + V++ R +E ++ + + Sbjct: 408 LSQEFVVFDLETTGFSNINDKITEIGAVKI-RDFEIVDRFSEL---VNPEKDISYRVQEL 463 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E E + +F ++ +N FD + + Sbjct: 464 TGITNEMVKDKPTIE-EILPKFMEFV---GDDVLVAHNADFDTGFIMQKCKEQGLE---- 515 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + D L + R + +KL +A G++ +N H A D Sbjct: 516 ---YKNKKVDTLMLARIM-------------LPNLKRYKLDKVAKEVGVQLLNHHRAVDD 559 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + K N + + ++ ++ ++ Sbjct: 560 AEATANIFIKFLGMLKKQGVEKLSDVNTVLGKVDYTKLKTHHITLIAKNQTGIKNLYKIV 619 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + Y+ I ++ + R + S A ++ + + + K + Sbjct: 620 SDAHVNHFYRAPRILQSVLDEYREGIIVGSACEAGVVYDAVKKRLPDEEME-KIIAPYDY 678 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MPID + D E + + + + D + Sbjct: 679 IEVMPIDNNRFMIDNGDVEDEDELKEINKRVVETAKKFGKIPVATGDVHFLDKHDAVLRR 738 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 F ++ + L+ +D L E Sbjct: 739 VLKFSQGFKLD----------DEETYLHFRTTDEMLDEF 767 >gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] Length = 629 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + V++ R E + D P +TGI Sbjct: 92 TFVVVDLETTGSRAADSEITEIGAVKI-RGGEVLAELATL---VRPDAPIPPFISVLTGI 147 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++A + F + ++ +N FD + R R + Sbjct: 148 TDAMVATAPRIDA----ALPTFLEFAHGSVLVAHNAPFDLGFLREACVRCGHP------- 196 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 W+ LD +R D KL LA + H A AD A Sbjct: 197 --VPDWEHLDTLRIARQVLG--------RDETPDHKLASLARLFPADAGPCHRALADARA 246 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+A++ + E+ + Sbjct: 247 TVAVLHGLFERLGGFGVTTLE 267 >gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM 43160] gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM 43160] Length = 609 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E + + P +TGI Sbjct: 38 TFVVVDLETTGGSPKDSAITEIGAVKV-RGGEVLGEFQTL---VDPGCEIPPYISVLTGI 93 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F ++ +N FD + + N Sbjct: 94 TSTMVAAAPR----IGAVLPHFLEFARGAVLVAHNAPFDLGFLKAACAANGIPWPAT--- 146 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D + R + D + KL LA H A AD A Sbjct: 147 ---ASVDTAVLARRL-----------LSRDEVPNCKLATLAPYFRTSTEPCHRALADARA 192 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + Sbjct: 193 TVDVLHGLFERLGPLGITSLE 213 >gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 589 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 22/201 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + + V+V R E + +TGI Sbjct: 43 TFVVVDLETTGAKPGPESITEIGAVKV-RGGETVGEFSTL---VNPGQPIPAFITSLTGI 98 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T R + A + +F + ++ +N RFD + + F + Sbjct: 99 TTAMTARAPRI-AAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWP----- 152 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + R + D +FKL LA A G H A D A Sbjct: 153 -SVRVLDTVALARRAF-----------SSDEVPNFKLSTLAGACGATTAPNHRALDDARA 200 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + + L + Sbjct: 201 TVDVLHAMLGRLGPLGVTHLE 221 >gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] Length = 1468 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 48/403 (11%), Positives = 107/403 (26%), Gaps = 34/403 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I+ + F + +TGI Sbjct: 429 TYVVFDVETTGLSAVNNSLIQIAASKM-HKGNIIDQFDEF---INPGHPLSQFTTDLTGI 484 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 485 TDNHLKDAKP----LLQVLEEFQEFCQDTVLVAHNATFDVGFMNANYERHDLPLI----- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 536 -SQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALDHHHMANYDAEA 581 Query: 184 TLALVWLIREKKPKL--FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L D K + ++ L++ Sbjct: 582 TGRLLFIFIKEARENRGITDLADLNTKLVSEDSYKKARVKHATIYVQNQTGLKNIFKLVS 641 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V + + + L L + ++ Sbjct: 642 --LSNVKYFEGVARIPRTVLDQYREGLLLGSACSEGEVFDAVLSHGLDKALEVAKYYDFI 699 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + + + + + L + L A + Y + ++ Sbjct: 700 EVMPPAIYRPLIARELIKNEEGIEQVIKDLIEVGRRLNKPVLATGDVHYLEPEDQLYREI 759 Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L + F Sbjct: 760 IVRSLGPGALINRPIGRGEGAQPAPLPDAHFRTTNEMLDDFAF 802 >gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1] gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus oeni PSU-1] Length = 1437 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 66/476 (13%), Positives = 153/476 (32%), Gaps = 44/476 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I+D ET G D+ Q + V++ + +++ + F + + + +TGIT Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKM-KNGVVLDTFDQF---INPGFPLSEQTINLTGIT 465 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 EAE + QF++ T + G+N I+FD + + + Sbjct: 466 DDLVKNS-KPEAEVLKMFQQFYAR--TILAGHNVIKFDYGFVNHALAVHKLP------KI 516 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ R +Y + L L+ + + H A D AT Sbjct: 517 NTLVIDTLNLARWLY-------------PNFGRYTLDFLSKKFSVNLEHHHRAIDDSTAT 563 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALIAP 242 L+ + ++ + + +YD + + P L + ++ L++ Sbjct: 564 GMLLHIFLKEAEENYGVVYDEQLNEHTDDHESWRQTRPTHLSILVKNQTGLKNLYKLVSE 623 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y+ S + +L R + S + LF + + + + Sbjct: 624 SNINYHYRVSRVPKSLLTKYRNGLLVGSGDIGGNLFDTLAREGIDKAIELADSINYDYIE 683 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + P++ + + D + + + ++ + + + + +D + Sbjct: 684 VQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTEKDRIYRTIL 743 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 T + D E F + + + + + Sbjct: 744 LNSKIARSAAAGETRYTLADLSMKKTQHLLD----EFAF--LGKEKAYEIVVENSHKINQ 797 Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468 KK L+ +IE ++ L+ + E G+ + + L L +I Sbjct: 798 MIDDVQPLKKGLSTPKIEGSEDILRKKAYARAKEMYGNPLPDLIQKRLDRELNAII 853 >gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1417 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 55/386 (14%), Positives = 115/386 (29%), Gaps = 31/386 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F ++D ET G D ++ + V V + E +E + F P+ +TGIT Sbjct: 397 FCVFDTETTGLDPGVEYMTEIGAVIV-KNGEVVEEFDTF---VKPGKPITPKITELTGIT 452 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E E +F + ++G+N FD + R R+ Sbjct: 453 NEMVADAPG-EKEALEAFLKF--AGDRILVGHNVHAFDMRFLRAAAKRSGI-------KL 502 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + +A+Y + +K + + AH A D A Sbjct: 503 EPTYIDTLTMAQAMYPGLHN-------------YKQGTINKHLELPAYEAHRACEDSAAL 549 Query: 185 LALVWLI-REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + ++ + K K + + + + + L+ + ++ +++ Sbjct: 550 GRIFGVMLNDLKEKQVAKVSEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEA 609 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE--LKGLVPVPIKEVHLNKCP 301 + +K + +L R L S A L+ + + + + + Sbjct: 610 HVNYFFKKPRVPRSLLNKYRDGLLLTSACEAGELYRAIVDGTSYEELKKIASYYDILEIQ 669 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L Y ++ D K + L + + + L Sbjct: 670 PLGNNAYMVRDGKVDSEEDIKNFNRTVIKLGE-DLHKPVIATGDVHFTEPEDAAYRAVLQ 728 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTL 387 G RT + L+ Sbjct: 729 AGNGFKDADNQPPLFFRTTQDMLAQF 754 >gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] Length = 234 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V++D ET G DV D + ++V + + F D P I Sbjct: 1 MIKTYVVFDLETTGLDVENDNIIEIGALKVRE-GKVTDRFMEF---LKPDMPISPMITGI 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + I F + I+ +NI FD + + + ++ Sbjct: 57 TGITNEMVKNA----RDTKTVIRDFVNFCEDHILVGHNIMFDYKFMKK-------YASQY 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R ++ S L+ L I + AH A D Sbjct: 106 GESFEKKGIDTLKIARKVH-------------KDLESKSLEALCEHYQIVNTAAHRAYHD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT + ++ + +++ Sbjct: 153 ALATAKVYHMMAHYFEEKGPTVFE 176 >gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] Length = 1375 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 153/474 (32%), Gaps = 47/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D + V++ + + +++ E F +TGI Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKI-KNKKIVDTFETF---VNPQIPISSFITKLTGID 443 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++E + +F ++ +N FD + ++ + Sbjct: 444 ESMVKDAPLIE----EVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGL-------TV 492 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D L++ R ++KL LA ++ ++ H A D AT Sbjct: 493 ENTVLDTLELSR-------------HLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKAT 539 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS---GMFGASRSNTALIA 241 + + EK ++ N + + +D++ + P+ HV+ R+ +I+ Sbjct: 540 AEIFIKMLEKLQEIGIKSVSEINSVLMEREVDVKKL-PVYHVTILVKDQKGLRNLYEIIS 598 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299 ++ I +L MR + S +F + + + + I + Sbjct: 599 RSNLEFFHRTPRIPKSLLVKMREGLIIGSACEQGEVFRALVSNLEEKKLEDIINFYDYLE 658 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + ++ + R + K + L ++ N + Sbjct: 659 IQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLDPWDDVYRKIL 718 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + D DRQ T + + F L E R P+ + E + Sbjct: 719 MAGKGYKDADRQPPLYFRTTE-----EMLMEFE--YLGEEAAREVVIENPNKI--AEIVE 769 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 ++ + IE + +L+ + + E GD + L L +I Sbjct: 770 DVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPLPPIVQERLDRELNAIIN 823 >gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4] gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type [Thermoanaerobacter tengcongensis MB4] Length = 1401 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 153/474 (32%), Gaps = 47/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D + V++ + + +++ E F +TGI Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKI-KNKKIVDTFETF---VNPQIPISSFITKLTGID 443 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++E + +F ++ +N FD + ++ + Sbjct: 444 ESMVKDAPLIE----EVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGL-------TV 492 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D L++ R ++KL LA ++ ++ H A D AT Sbjct: 493 ENTVLDTLELSR-------------HLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKAT 539 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS---GMFGASRSNTALIA 241 + + EK ++ N + + +D++ + P+ HV+ R+ +I+ Sbjct: 540 AEIFIKMLEKLQEIGIKSVSEINSVLMEREVDVKKL-PVYHVTILVKDQKGLRNLYEIIS 598 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299 ++ I +L MR + S +F + + + + I + Sbjct: 599 RSNLEFFHRTPRIPKSLLVKMREGLIIGSACEQGEVFRALVSNLEEKKLEDIINFYDYLE 658 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + ++ + R + K + L ++ N + Sbjct: 659 IQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLDPWDDVYRKIL 718 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + D DRQ T + + F L E R P+ + E + Sbjct: 719 MAGKGYKDADRQPPLYFRTTE-----EMLMEFE--YLGEEAAREVVIENPNKI--AEIVE 769 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 ++ + IE + +L+ + + E GD + L L +I Sbjct: 770 DVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPLPPIVQERLDRELNAIIN 823 >gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1407 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 64/481 (13%), Positives = 140/481 (29%), Gaps = 53/481 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + F ++D ET G D + V++ ++ + I++ E F + Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +E E + +F N+ ++ +N + N + Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +LD + D ++KL LA ++ + H A D Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLADHLQVKLEHHHRAVDD 541 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + ++ +L N +DI+ + P+ HV+ + + L Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600 Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298 ++ + Y S + + L ++ + L ++ + Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISRREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + + E + ++ + D Sbjct: 661 DYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDDIY 720 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + ++ L +D L E F Y + Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768 Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + +++ + IE + +L+ L + E GD E + N L L +I Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828 Query: 469 P 469 Sbjct: 829 N 829 >gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 684 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G DR + AGVR+ R E +++ + + P V TGI+ Sbjct: 101 FVVVDTETTGLRPGPDRVIEVAGVRM-RNGEILDTFQSL---VHPERRIPPFIVRFTGIS 156 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + +F + +N+ FD + + Sbjct: 157 PEMLADAPKA-RDIMPDFLRFIE---GATLVGHNLSFDVNFLTHEAQLLGLPFP------ 206 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + LD + G FKL +A I+ N H A D T Sbjct: 207 ----VEGLDTILLSRRLL----------PGLKRFKLDMVAQYLQIQTHNRHRALGDAQVT 252 Query: 185 LALVWLIREKKPKLFEYLYDY 205 + + E+ + + Sbjct: 253 ADVFARLLERAKIQEIHTLGH 273 >gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c] gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c] Length = 615 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G +F V+V R E + P +TGI Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKV-RGGEVVAEFATL---VRASTGIPPLITVLTGI 106 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE +F ++ +N FD + + R Y W Sbjct: 107 TDAMLATAP-PLAEVLPAFLEFIQ---GTVLVAHNAGFDLSFLKAACERVGYPVPTWEH- 161 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD R D + + KL LA H A AD A Sbjct: 162 --------LDTARLARRI--------VTRDESPNNKLSSLARLFRARTEPCHRALADARA 205 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + Sbjct: 206 TVDVLHGLFERLGNLGVTTLE 226 >gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 1365 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 62/206 (30%), Gaps = 28/206 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G DR + RV + E + + + + ITG Sbjct: 347 ESFVVFDLETTGLSRYKDRITEIGACRV-EGGKITEIYNEL---VNPEMVIPEKIIEITG 402 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E + F I+ N FD + R +R D Sbjct: 403 ITNEMVKDCPTIE----EVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPI-- 456 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 LD + A D + F L +A I N H A D Sbjct: 457 --------YLDTLPMARALFSDMKK----------FSLDKIARKLEIPAFNHHRASDDAR 498 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 AT + + + + NK Sbjct: 499 ATAQIFIKMFKMIMEEDGINLSTINK 524 >gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG 18811] gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc gasicomitatum LMG 18811] Length = 1437 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 52/408 (12%), Positives = 115/408 (28%), Gaps = 38/408 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G D+ + + V++ + IE + + +T IT Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKM-QLGNVIEKFSEY---INPGFPLSDFTTKLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E +R Q+ ++ +N+ FD + + R + Sbjct: 475 DTMVAHTD-TEENIIKRFRQWV---GEAVLIGHNVTFDIGFMNAAYARYSQE------SI 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L R +Y S++L +A I AH A D T Sbjct: 525 TNPVIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDAETT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + W + ++ ++ + + + + + ++ P VH + + L V+ Sbjct: 572 GHIAWRLIKEANLRYDLVRHEQLNDHMTEGDAWKHGRP-VHATLLVQNDIGLKNLYKLVS 630 Query: 245 WHPRYKD-SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 V S + + L ++ +K+ + Sbjct: 631 QSNINFFARVPRIPRSILDQYREGLIIGTGDTSGDVIMTLIEKGRDEALKKAQYYDYIEI 690 Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P + + ++ L ++ L+ + YT+ + + Sbjct: 691 QPTANYEPMLESELIANTEKLHAILQEMVSIGDQLKKPVVVTGDVKYTNPEDKIYRDILI 750 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL---PELFFRYRARN 407 + + P+ D +L + N Sbjct: 751 -----ATQPGNPQNRTALPKLYFRTTQDLLDDYAFMGEDLAKKLIIDN 793 >gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B] gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus 11B] Length = 566 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + A V+V R E + + P +TGI Sbjct: 25 TFVVVDLETTGGAPGTGAITELAAVKV-RGGEVLGELQTL---VNPGRPIPPFITVLTGI 80 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++A + F ++ +N FD + R YD Sbjct: 81 TDAMVAPAPPIDA----VLPTFLEFATGSVLVAHNAPFDVGFLRAACAAAGYDW------ 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +++LD R + A + L LA + H A ADVYA Sbjct: 131 ---PEFEVLDTARLARRVL--------TREEAPNCTLATLARVFRAKTTPNHRALADVYA 179 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 180 TIDVLHGL 187 >gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] Length = 216 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 69/200 (34%), Gaps = 27/200 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ +D ET G D A R + V+ DR+ V + EA + GIT Sbjct: 16 FIAFDTETTGLDPAAGRIVEIGAVKFDRRG-IAARYNVL---INPEIPMPEEAGKVNGIT 71 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + FF T ++ +N FD Y R Sbjct: 72 DEMLKDKPL----IAAVFPDFFDFIGTGVLVAHNAPFDINYINAELKRIGKSPL------ 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 GN D + ++ G +S+ LQDLA+ GI + AH A+ D Sbjct: 122 GNKVVDTRIFAKEVF-------------PGLSSYALQDLAVQFGITALEAHRAEDDARVC 168 Query: 185 LALVWLIREKKPKLFEYLYD 204 + L I + K L + Sbjct: 169 MELFDKILNRFLKNNPELVE 188 >gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] Length = 232 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V +D ET G + + ++V + ++ F + P + Sbjct: 1 MLKSYVAFDIETTGLSPEHNEIIEIGALKVRE-GKVVDRFIRF---IEPEAGIPPMITQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT G E +F + +N++FD + + Sbjct: 57 TGITNDMVEGAGNC-GEVLPEFLEFCER---DTLIGHNVQFDFSFVKTKAKELG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + D L + + ++A S KL L IE+V AH A D Sbjct: 107 -YTYDHMGIDTLKIAKVVHA-------------DLPSRKLGALCEYYHIENVAAHRAYHD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + + ++ Sbjct: 153 ALATAKLYQSMAHFYEEKEPKVFK 176 >gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family [Enterococcus faecalis TX1467] Length = 240 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 226 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 69/233 (29%), Gaps = 34/233 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+YD ET G D + + V+V R + ++ A + I+ Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGRPIPYAASSVNNIS 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + + G+N FD + + F Sbjct: 73 DKMVENA-RSFEKVLPEFLAF--AGDDVLAGHNIAGFDMKFLYRDCEKYF------GQTL 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L + + + KL DLA GI AH A AD Sbjct: 124 TNDYIDTLAIAKLCF-------------PEWKHRKLSDLAEHYGISTKGAHRALADCRMN 170 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 + L+ ++ + Q + I + L +G FG T Sbjct: 171 QQVFELMAKESGG--------TSAKQTEEKICPRCGLALKKRNGRFGGFWGCT 215 >gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] Length = 1510 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 111/404 (27%), Gaps = 49/404 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G ++ + V+V E ++ F + +T Sbjct: 478 DKYVVFDIETTGFSPEKNKIIEIGAVKV-IGGEIVDRYSTF---INPEVPIPFRIEELTS 533 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + V + + QF CI+ +N FD + + + Sbjct: 534 IRDDMVITSPTV--DVI--LPQFMEFCKDCIMVAHNADFDMSFIKRNCALLGMECNPT-- 587 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++D + P + FKL +A A I + H A D Sbjct: 588 --------IVDTVALARVLLPQLNR----------FKLDTVAKALNISLDHHHRAVDDAA 629 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 T + EK D N K+ + + + ++ + G + + Sbjct: 630 CTAEIFVKFIEKLKDRGISSLDEVNALAKSSVEMIRKMPTYHAIILATCDQGRTNLYRLI 689 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----V 295 H +Y + S + L + L G I Sbjct: 690 ---SLSHIKYYNKRPRIPKSEFNKYRDGLLIGSACEAGELYRAILNGRPQEEITRLVNFY 746 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + L + ++ + N +++ A + + + + Sbjct: 747 DYLEIQPLGNNAFMIRDEDSDIASNDDLIDINKRIVKLGEEFGKLVVATCDVHFLNPEDE 806 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + ++ ++ + L L ++ L E Sbjct: 807 IYRRIIMAGKGFK-----------DADEQAPLYLRTTEEMLKEF 839 >gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1465 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 53/450 (11%), Positives = 109/450 (24%), Gaps = 40/450 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHNLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEK 415 L G + + L + ++ L E F + A ++ Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815 Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 E K L I++ + + L Sbjct: 816 MADRIEEVEVVKGDLYTPYIDKAEETVAEL 845 >gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1465 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 53/450 (11%), Positives = 109/450 (24%), Gaps = 40/450 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHNLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEK 415 L G + + L + ++ L E F + A ++ Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815 Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 E K L I++ + + L Sbjct: 816 MADRIEEVEVVKGDLYTPYIDKAEETVAEL 845 >gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] Length = 1269 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 50/366 (13%), Positives = 98/366 (26%), Gaps = 35/366 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + V+V + + F + E +T Sbjct: 454 DTYVVFDIETTGFSAVEDHIIEIGAVKV-ENGKITDKYSTF---VNPEVPIPFEITQLTS 509 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + + + + QF + +N FD + Sbjct: 510 IDDSMVMDAPKI--DVI--LPQFLEFVGDASLVAHNAGFDVGFIEQNC----------KN 555 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N + +D + P + +KL +A A I N H A D Sbjct: 556 LNIEQEFVSVDTVALARVLLPTLSK----------YKLNIVAKALNISLENHHRAVDDAG 605 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIA 241 AT + E + N ++ M + R N + Sbjct: 606 ATAEIFVKFVEMLKEREITTLKGVNAFGATNPDAVKKMPTYHAIILAKNDVGRVNLYRLI 665 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300 + H Y S R + L + L I + V Sbjct: 666 SL-SHLTYYARRPRIPKSEFNRYREGLLIGSACEAGELYQAVLNNKSDETIARLVEFYDY 724 Query: 301 PILMPI--DYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 + P+ + + + I L+ N +++ A + + + +V Sbjct: 725 LEIQPLGNNQFMVDSPKYSQIRSDEDLKDINRKIVKLGEEFHKPVVATCDVHFLDAEDEV 784 Query: 357 DSQLYD 362 ++ Sbjct: 785 YRRIIM 790 >gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514] gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513] gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514] gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513] Length = 1407 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 64/481 (13%), Positives = 140/481 (29%), Gaps = 53/481 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + F ++D ET G D + V++ ++ + I++ E F + Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +E E + +F N+ ++ +N + N + Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +LD + D ++KL LA ++ + H A D Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLAEHLQVKLEHHHRAVDD 541 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + ++ +L N +DI+ + P+ HV+ + + L Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600 Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298 ++ + Y S + + L ++ + L ++ + Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISRREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + + E + ++ + D Sbjct: 661 DYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKYNKLIVATGDVHFLDPWDDIY 720 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + ++ L +D L E F Y + Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768 Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + +++ + IE + +L+ L + E GD E + N L L +I Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRRLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828 Query: 469 P 469 Sbjct: 829 N 829 >gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152] gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152] Length = 598 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 25/200 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V+V R E + P V +TGI Sbjct: 26 TFVVVDLETTGTSPEGDAITEIGAVKV-RGGEVLGEFATL---VNPGRAIPPAVVQVTGI 81 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +EA + F ++ +N RFD + R R Sbjct: 82 TTALVYAAPRIEA----VLPGFLEFAAGAVLVAHNARFDTAFLRAAAARCALPW------ 131 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +L ++ D A S +L LA G H A D A Sbjct: 132 ---PDAPVLCTVKLARRVLG--------RDEAPSVRLASLARLLGASTQPTHRALDDARA 180 Query: 184 TLALVWLIREKKPKLFEYLY 203 T+ ++ + + + Sbjct: 181 TVDVLHALIARVGNQGVHSL 200 >gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] Length = 590 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 25/200 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G D + VRV R P +TGIT Sbjct: 32 FVVVDLETTGGSPNADAITEIGAVRV-RGGVVEGELGTL---VDPGRSIPPTITVLTGIT 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + F + ++ +N RFD + R R Sbjct: 88 NAMVIGAPPIE----EVLPSFLEFAHGAVLVAHNARFDTGFLRVAAERMGLTWP------ 137 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + R + D A + +L LA H A D AT Sbjct: 138 KPLVVDTVQLARRV-----------VSRDEAPNHRLGSLARLFHASVTPDHRALTDARAT 186 Query: 185 LALVWLIREKKPKLFEYLYD 204 + ++ + + L + Sbjct: 187 VDVLHGLLARMAPLGVTHLE 206 >gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] Length = 565 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 56/196 (28%), Gaps = 28/196 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A DR + A VRV + +E P +TGI Sbjct: 7 SFVVVDTETTGSGPA-DRIIELAAVRV-QGGRIVERFATL---INPGRSVPPFITRLTGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E F ++ +N+ FD R Sbjct: 62 TTAMLVGRP-SADEVLPDFLDFLGDG---VLVAHNLAFDRKMLEAELQRIGLAWPGNP-- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L +R G + L L I N H A D A Sbjct: 116 -------ALCTLRLARRLL----------PGLPAKGLDGLIRFYQIPVENRHRALGDAEA 158 Query: 184 TLALVWLIREKKPKLF 199 T ++ + E+ + + Sbjct: 159 TAHVLLRLLEEARRQY 174 >gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216] gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 601 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 22/218 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + V+V R + + + +TGI Sbjct: 27 TFVVVDLETTGGAPADAGITEIGAVKV-RGGQVLGEFQTL---VRPSSPIPAFVQVLTGI 82 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T A+ +F ++ +N +D + + Sbjct: 83 TNGMVATAP-SLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQVTGRPWP----- 136 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + R + D A KL LA G H A D A Sbjct: 137 -KPRVVDTVVLARQL-----------VDRDEAPDRKLGTLARLFGTATTPDHRALHDARA 184 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 T+ ++ + + + + + + ++ Sbjct: 185 TVDVLHALLGRVGNRGVHSLEDLSAFAATAVNPVRRAK 222 >gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180] gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180] Length = 1465 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 95/404 (23%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQDA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270] gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270] Length = 1465 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQDA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862] Length = 1440 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 92/322 (28%), Gaps = 27/322 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D+ + + V++ + I F + V +T IT Sbjct: 424 FVVFDVETTGLSAVYDKVIELSAVKM-VKGNVIAEFSEF---IDPGFPLSQTTVDLTSIT 479 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + +F ++ +N+ FD + + + R+ Sbjct: 480 DDMVRGS-KPEKQVFEEFREF---YGDAVLVGHNVTFDMGFMQEGYARHQLAPI------ 529 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L + R +Y S++L LA GI H A D T Sbjct: 530 TNPVIDTLILARFLY-------------PNMRSYRLNTLAKHFGIVLEQHHRAIFDSETT 576 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L + E+ + + Y + + + ++ P + + + Sbjct: 577 GHLNRVFLEQAREEYGIEYADQLNDHMMDNDAWRHGRPNHAIVLVQTQTGVKNLYKMISE 636 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +Y V S + + L ++ ++ + Sbjct: 637 SNTKYLQRVPRVPRSLLNKYREGLLLGTGDNTGEFWEALMQKGYAAAKEKATYYDYIEIQ 696 Query: 305 PIDYCKKEHFERWGIDHKRCLE 326 P D R E Sbjct: 697 PSANYVPALEAELIQDEARLRE 718 >gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] Length = 1465 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/406 (12%), Positives = 106/406 (26%), Gaps = 40/406 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-YKGNILEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + +F + ++ +N FD + + R Sbjct: 482 TDNHLVGAKPLH----QVLVEFQAFCKDTVLVAHNASFDVGFMNANYARENLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKP--KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ + L D K + ++ L++ Sbjct: 579 TGRLLFIFLKDAREKHNVTNLLDLNTKLVAEDSYKKARVKHATIYVQNQVGLKNMFKLVS 638 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + Y + V + + + L L V ++ Sbjct: 639 --LSNVVYFEGVPRIPRTILDQYREGLLLGSACSEGEVFDTVLNKGVDAAVEVGKYYDFI 696 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQD 355 +MP + D + + + L + L + Sbjct: 697 EIMPPAIYQPLIARELIKDQEGIHQIIRDLIEVGARLNKPVLVTGNVHYIEPEDEIYREI 756 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 + L G + + L + ++ L E+ F Sbjct: 757 IVRSLGQGAIINRTIGRGEGAQPAP---LPQAHFRTTNEMLDEMAF 799 >gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 226 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 34/233 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+YD ET G D + + V+V R + ++ A + I+ Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGRPIPYAASSVNNIS 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + + G+N FD + + F Sbjct: 73 DKMVENA-RSFEKVLPEFLAF--AGDDVLAGHNIAGFDMKFLYRDCEKYF------GQTL 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L + + + +L DLA GI AH A AD Sbjct: 124 TNDYIDTLAIAKLCF-------------PEWKHRRLSDLAEHYGISTKGAHRALADCRMN 170 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 + L+ ++ + Q + I + L +G FG T Sbjct: 171 QQVFELMAKESGG--------TSAKQTEEKICPRCGLALKKRNGRFGRFWGCT 215 >gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322] gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322] Length = 175 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 27/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREK 194 L+ LI+EK Sbjct: 166 AELLLLIQEK 175 >gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2] gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2] Length = 920 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 71/204 (34%), Gaps = 27/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D ET G D A+DR QF V + + + I D + + Sbjct: 1 MKPIYAVVDLETTGTDPAIDRIIQFGCVLI-QDGQVINRFAT---DINPDRRISKQIQNL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT Q+ R E + + I+ + + +NI FD ++ R S Sbjct: 57 THITNQQVKRAPYFE-DVAHTIYNLLTQ---TVFVAHNIYFDYHFLSQELIRCGMPSLE- 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D + F +SF+L DLA + G H N H A +D Sbjct: 112 --------IPGIDTVELAQVFL----------PTESSFRLGDLAESIGFVHENPHQADSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 T AL+ I +L Sbjct: 154 AEVTAALLLYIESIMRELPWVTLK 177 >gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 1487 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 54/414 (13%), Positives = 104/414 (25%), Gaps = 48/414 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + V+V E F +T I Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKV-ENGRITERFSEF---VNPQIPIPFRIEELTSIN 518 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + +F C++ +N FD + R + + Sbjct: 519 DNMVADAPTIDV-ILPKFEKF---CEGCVMVAHNAEFDMSFIRKNYEDIGIE-------R 567 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++ D + + R FKL +A A G+ + H A D T Sbjct: 568 EDTVVDTVGMAR-------------FLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCT 614 Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + I + L + K + + T + R N Sbjct: 615 ADIFVKFIEMCAERDIFNLDELNEKGTVSVHSIQKMPTYHAIILAKNDVGRVNLY-HLIS 673 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHLNK 299 H Y S ++ + L + L G I + Sbjct: 674 DSHLIYYHRRPRIPKSLFLKYQEGLLIGSACEAGELYQAVLNGRPEQEIARLVNFYDYLE 733 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 L + K + E N +++ + + +V Sbjct: 734 IQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLGEAFNKPVVGTCDVHFLDPEDEVYR 793 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412 ++ + + L L ++ L E Y R + Sbjct: 794 RIIMAGKGFD-----------DADDQAPLYLRTTEEMLKEFS--YLGREKAEEI 834 >gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] Length = 1449 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 59/481 (12%), Positives = 144/481 (29%), Gaps = 58/481 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G +++ + +++ + + I+ C P V +T I Sbjct: 425 TYCVLDLETTGFSPVIEKITEIGIMKI-KDGKVIDKFS---CFVNPKKPIPPRVVEVTNI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + ++ F ++ +N FD + ++ YD Sbjct: 481 TDDMVRDAETIE-QVFPKMLDFIKDS---VLVAHNAEFDIGFLKHNARVLGYDF------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + + ++KL +A GI+ AH A DV Sbjct: 531 -DFTYLDTLTLAQ-------------ELFPDFKTYKLGRIAKNLGIKVEVAHRALDDVDT 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238 T+ + ++ EK + + + + L + A ++ Sbjct: 577 TVKIFNVMLEKLKERGAETLQDVDVYGSDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYK 636 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 L++ YK I ++ L S L+ + L Sbjct: 637 LVSYSHLDYFYKKPRILKSMYKKYSEGLILGSACSEGELYQA-ILLGKSDEQIEAIAQDY 695 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P+ + + + + N ++ A + + ++ Sbjct: 696 DYLEIQPLGNNDYLVRQEQVPNKEYLKKINKKIIALAEKFNKPVVATGDVHFMDPEDEIY 755 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 ++ + + + L L ++ L E Y + + Sbjct: 756 RRILEAGQGFK-----------DADNQAPLYLRTTEEMLQEFS--YLGEEKAYEVVVTNT 802 Query: 418 QDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467 + +++ ++ + I+ + ++ + + E GD E + L + L+ + Sbjct: 803 NKIADMCEQISPISPEKCPPHIDGCEQTIKDIAYEKAHELYGDPLPEIVQTRLDKELESI 862 Query: 468 I 468 I Sbjct: 863 I 863 >gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 226 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 34/233 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+YD ET G D + + V+V R + ++ A + I+ Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGRPIPYAASSVNNIS 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + + G+N FD + + F Sbjct: 73 DKMVENA-RSFEKVLPEFLAF--AGDDVLAGHNIAGFDMKFLYRDCEKYF------GQTL 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L + + + +L DLA GI AH A AD Sbjct: 124 TNDYIDTLAIAKLCF-------------PEWKHRRLSDLAEHYGISTKGAHRALADCRMN 170 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 + L+ ++ + Q + I + L +G FG T Sbjct: 171 QQVFELMAKESGG--------TSAKQTEEKICPRCGLALKKRNGRFGGFWGCT 215 >gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 717 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G A +R + V++ R E I++ + + P +TGI+ Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKI-RNGEIIDTWQSL---INPERRIPPFITELTGIS 600 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + F + +N+ FD + + R Sbjct: 601 NAMVRDAPR-FADIADDFDAFLK---GTVFVAHNVNFDYGFLSAEYRRLERP-------- 648 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ + + ++ P + L L+ GIE N H A +D A Sbjct: 649 --FRYPKMCTVASMRRHFPGLAA----------YGLGPLSREFGIELKNHHRALSDAMAA 696 Query: 185 LALVWLIREK 194 L+ LI E+ Sbjct: 697 AELLKLINER 706 >gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 238 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 64/205 (31%), Gaps = 32/205 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V +D ET G D + V+V + + F P I Sbjct: 1 MIKTYVAFDLETTGLSEERDSIIEIGAVKV-TDGKVTDRFMEF---LKPAEEISPMITQI 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +A I F ++ +NI FD + + Y Sbjct: 57 TGITNEMVAHARNTKA----VIDDFMGFCGEEVLLGHNILFDYKFMKR---------YAC 103 Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + + R D L + R ++ S L+ L I++ AH A Sbjct: 104 KYQHSFERRGIDTLKIARKVH-------------KDLESRSLEALCAHYQIKNDAAHRAY 150 Query: 179 ADVYATLALVWLIREKKPKLFEYLY 203 D AT L + + L+ Sbjct: 151 HDALATAKLYHCLGHYFEEKEPNLF 175 >gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] Length = 933 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 28/209 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M N +V+ D ET G D+ QFA V + + E + P Sbjct: 1 MGNKYVVVDLETTGNAPKKGDKIIQFAAVVI-ENGKITEEYSSL---VNPEQSIPPFIEE 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG++ + + +E + ++ +N+ FD + + Y Sbjct: 57 LTGLSDEMVENAPL-FSEIAPKVLTLLE---GAYFVAHNVLFDLSFLQEELIEAGY---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +LD + A SFKL DLAL G+ H H A + Sbjct: 109 -----NGFYGPVLDTVEMARILF----------PTADSFKLSDLALREGLNHERPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208 D Y T L+ ++ K L D +K Sbjct: 154 DAYVTAELLLILLNKLKNLPHNTIDLLHK 182 >gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] Length = 631 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A D + V+V R E + + P +TGI Sbjct: 63 TFVVVDLETTGGRAAEDAITEIGAVKV-RGGEVLGEFQTL---VDPGGPVPPFIQVLTGI 118 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E +F ++ +N FD + + + Sbjct: 119 TTSMLVGAPTI-GEVLPSFLEF---ARGAVLVAHNAPFDVGF---------LRAAAARSE 165 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++D +R D A + KL LA G H A AD A Sbjct: 166 RAWPGFQVVDTVRLARRV--------VLRDEAPNHKLSTLAALFGATVTPNHRALADARA 217 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + + L + Sbjct: 218 TVDVLHALLGRLAPLGVTHLE 238 >gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2] Length = 581 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 24/201 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI D ET G + V+ R E + + KP ++ + P +TGI Sbjct: 30 TFVIVDLETTGTTAGKSEITEIGAVKT-RGGEVLGEFQSL-VKP-EESVISPFVARLTGI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F ++ +N FD + R+ + Y + + Sbjct: 87 THAMVDDAPS----IRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPT-- 140 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + R + D + KL LA G E H A +D A Sbjct: 141 ----VLDTVTLSRRV-----------VSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKA 185 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T ++ + E+ + Sbjct: 186 TGEVLHRVLERFGGYGITTLE 206 >gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 715 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 28/196 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G + + +R + V++ ++++ + +TGI+ Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKL-VGGKEVDRFQTL---LNPQRRIPSSITRLTGIS 598 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + I F + +N+ FD + + F R Sbjct: 599 DDMVADAPL-FAEVADHIASFTED---AVFVAHNVNFDYGFIKQEFARLEQ--------- 645 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + R + +R + G +S+ L +L I+ H A +D A Sbjct: 646 -SFRRPKMCTVREMR----------RTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAA 694 Query: 185 LALVWLIREKKPKLFE 200 L+ L EK + F Sbjct: 695 AELLKLAFEKDDEGFS 710 >gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans CB1190] gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans CB1190] Length = 586 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + V+V R E + P V +TGI Sbjct: 30 TFVVLDLETTGGSSANHSITEIGAVKV-RGGEVLGELATL---VDPGTGVPPGVVALTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T A+ + +F ++ +N FD + R R+ Sbjct: 86 TTAMVTGAPR-LAQVLPTLLEFM---GGAVLVAHNAPFDAGFLRAACERHDRRW------ 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R L R A A S +L LA G H A AD A Sbjct: 136 ---PRPPQLCTARLARAVL--------SRAEAPSVRLGALARLFGTATQPTHRALADARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + Sbjct: 185 TVEVLHRLLERVGNLGVQSLE 205 >gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] Length = 483 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 28/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F D ET G + + DR + +R R + + + P +TGI Sbjct: 12 TFAFLDIETTGGNPSHDRITEIG-IRFWRAGAVVGEWQTL---VNPETRISPFIESLTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T V E + + + + I +N RFD + + F R Sbjct: 68 TNDMVADAPVFE-DIAEVLEKQLKD---TIFVAHNARFDYGFIKAEFRRLGL-------- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +L ++ G + L +G+E V H A DV A Sbjct: 116 --LFSAKVLCTVKLSRKLY----------PGFRRHNMDALIERHGLEQVQRHRALGDVAA 163 Query: 184 TLALVWLI 191 +A Sbjct: 164 MMAFFEHA 171 >gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] Length = 1487 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 54/414 (13%), Positives = 104/414 (25%), Gaps = 48/414 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + V+V E F +T I Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKV-ENGRITERFSEF---VNPQIPIPFRIEELTSIN 518 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + +F C++ +N FD + R + + Sbjct: 519 DNMVADAPTIDV-ILPKFEKF---CEGCVMVAHNAEFDMSFIRKNYEDIGIE-------R 567 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++ D + + R FKL +A A G+ + H A D T Sbjct: 568 EDTVVDTVGMAR-------------FLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCT 614 Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + I + L + K + + T + R N Sbjct: 615 ADIFVKFIEMCVERDIFNLDELNEKGTVSVHSIQKMPTYHAIILAKNDVGRVNLY-HLIS 673 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHLNK 299 H Y S ++ + L + L G I + Sbjct: 674 DSHLIYYHRRPRIPKSLFLKYQEGLLIGSACEAGELYQAVLNGRPEQEIARLVNFYDYLE 733 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 L + K + E N +++ + + +V Sbjct: 734 IQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLGEAFNKPVVGTCDVHFLDPEDEVYR 793 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412 ++ + + L L ++ L E Y R + Sbjct: 794 RIIMAGKGFD-----------DADDQAPLYLRTTEEMLKEFS--YLGREKAEEI 834 >gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1415 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 66/399 (16%), Positives = 120/399 (30%), Gaps = 41/399 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V++D ET G D+ + V++ E L + +T Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKI-VDGIITERFSQL---INPQMLIPEKVQELTR 454 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E E + + + F ++ +N +FD + R +F N D Sbjct: 455 ITNALVENEPTIE-EVAPKFYDFIKDS---VLVAHNAKFDTAFIRRVFKENDLDFI---- 506 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L RA F L L G+ V AH A D Sbjct: 507 ---NPILDTLSFARA-------------TVKDTKKFNLATLCKKFGVSLVGAHRAVNDAE 550 Query: 183 ATLALVWLIRE--KKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT L + PK ++ K+Q+ I ++ ++ + ++ L+ Sbjct: 551 ATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSIL--TKNEEGLKNLYKLV 608 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + + + + +L R + S + +F + + V K Sbjct: 609 SDSHMNYFNRVAKVPRSLINKYRKGLLIGSGDESGEIFNAFFRNLEIDEVE-KIASFYDY 667 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PID N + + NL A N Y D+ ++ Sbjct: 668 LEIQPIDNFIPSLLRNKLTREDIIEINKKICKVGENLGIPVIATSNCFYLDEKDDLVRRI 727 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + L +D L E Sbjct: 728 IL--------NGKVGVPDYNAKIKQKLYFKSTDLMLEEF 758 >gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] Length = 720 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 61/190 (32%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G + DR + V+V R + +E + V +TGIT Sbjct: 546 YVVVDIETTGSWSSGDRITEIGAVKV-RNHQIVEEWHSL---INPQRPIPAKIVELTGIT 601 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + + F I +N+ FD + + R Sbjct: 602 NQMVRDAP-FFHDIADSFIAFMGDG---IFVAHNVNFDYGFLSYEYERLER--------- 648 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ L + R G S+ L L GI + H A D A Sbjct: 649 -RFRFPKLCTCVGMR----------RRYPGHKSYGLGKLCAIYGIALDDHHRALCDARAA 697 Query: 185 LALVWLIREK 194 L+ LI +K Sbjct: 698 ARLLHLINKK 707 >gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus pyogenes M49 591] gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131] gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131] Length = 1465 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQDA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAVYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1472 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 55/403 (13%), Positives = 113/403 (28%), Gaps = 46/403 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET G L++ + ++V + + I+ F + P V +T Sbjct: 444 DIYCVLDLETTGFSPKLEKITEIGIMKV-KDGKVIDKFSTF---VNPEKPIPPRVVEVTN 499 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + + I+ +N FD + R+ +D Sbjct: 500 ITDDMVRNAETID----KVFPKMLEFIEGSILVAHNAEFDIGFLRHYAKVLGHDF----- 550 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L + + S+KL +A GI+ AH A DV Sbjct: 551 --DFTYLDTLSLAQ-------------DLFPQYKSYKLGRIAKNLGIKVEVAHRALDDVD 595 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNT 237 T+ + ++ + + + L + A ++ Sbjct: 596 TTVKVFNVMIDMLKERGAKTLSDIETYACDEESKKVQYKKLRTHHAIILAKDYTGLKNLY 655 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 L++ YK I ++ L S LF S L Sbjct: 656 KLVSYSHLDYFYKKPRILKSMFKKYSEGLILGSACSEGELFQS-ILLGKSDEEIENIAKD 714 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 + PI + + E N ++ L A + + ++ Sbjct: 715 YDYLEIQPIGNDDYLIRNEQVPNKEYIKEINRKIISLGEKLGKLVVATGDVHFMDPEDEI 774 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ + + + L L ++ L E Sbjct: 775 YRRILEAGQGFK-----------DADMQAPLYLKTTEEMLEEF 806 >gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 1459 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 66/491 (13%), Positives = 126/491 (25%), Gaps = 67/491 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D D+ + V++ R E I F + + +T IT Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKM-RGREVIGEFSEF---VNPEIPIPQKITELTTIT 480 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + +F + +N +FD + + + Sbjct: 481 DEMVANAEKIE----TVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLE-------Y 529 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D L + R + L +L GI H A D AT Sbjct: 530 SPSVIDTLPLART-------------LLPELRGYGLANLVKYFGITLETHHRAVDDAKAT 576 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + N + + + + + ++ V G + Sbjct: 577 AEVFQKFLNMILSKGILKLIEINTDLQPNIQNSETLNTMILVKNQAGLRDLYELV----- 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 R G + + L S E V + K I Sbjct: 632 --SRSHIEFFGKRRPRIPKSLLNSMRENLLIASSASASERNRGELVNLYLRGTEKDDIEE 689 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN---------------KPY 349 + R + + +R+ K Y Sbjct: 690 KAKFYDYIEIHPTANYTDRVEKRSKEIENYDIIREMNKYFYELGKKLNKIVVATGDTHYL 749 Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP 409 + L G ++ + + L ++ L E F+Y Sbjct: 750 EEREVINRNVLLLGSGTMWKTEVAEGVKEYEFFDR-KLYFKTTEEMLEE--FKYLGEETA 806 Query: 410 HTLSEKEKQDWLEHRKKM------LTRSRIEEY--------KNKLQSLSGEYKGDEGKEG 455 + + + +++ +IE +KL+ L GE + KE Sbjct: 807 QEVVVENTHRISDMIEQVRPIPTGFYPPKIEGAEDEVRKMTYSKLKELYGENIDPDLKER 866 Query: 456 LINALYEYLQW 466 + L +Q Sbjct: 867 VEKELNSIIQN 877 >gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] Length = 1466 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 61/454 (13%), Positives = 124/454 (27%), Gaps = 48/454 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 427 TYVVFDVETTGLSAINNDLIQIAASKM-YKGNIIEQFDEF---INPGHPLSSFTTELTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F + I+ +N FD + + R+ Sbjct: 483 TDNHLIGAKT----LLQVLEAFQAFCQDAILVAHNASFDVGFMNANYERHHLPLI----- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 534 -KQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 579 Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L D K + ++ L++ Sbjct: 580 TGRLLFIFLKEAREKHGLTNLLDLNTKLVAEDSYKKARVKHATIYVQNQIGLKNIFKLVS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V + + + L L V + + Sbjct: 640 --LSNVKYFEGVPRIPRTVLDQHREGLLLGTACSEGEVFDAVLTKGVEAATELANYYDFI 697 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP + D + + L L+ L A N Y + + ++ Sbjct: 698 EIMPPALYQPLIARELIKDQEGVQKAILDLIEVGKRLNKPVLATGNVHYIEPEEAIYREI 757 Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHT 411 P L + ++ L EL ++ +N Sbjct: 758 IVRSLGQGAMINRPIGRGEGAQPAPLPEAHFRTTNEMLDDFAFLGKELAYQVVVQN---- 813 Query: 412 LSEKEKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 ++ E K L I++ + + L Sbjct: 814 -TQDFADRIEEVEVVKGDLYTPFIDKAEETVAEL 846 >gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] Length = 930 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 76/244 (31%), Gaps = 37/244 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +V+ D ET G DR QF+ V V E F + P + Sbjct: 1 MQRYVVVDLETTGNSAKKGDRIIQFSAVVV-EGREIKTQFTSF---VNPEKPVPPFISEL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI V +E + RI + I +N+ FD + + + Sbjct: 57 TGIDNGMLEEAPV-FSEIAPRIMEILEDS---IFVAHNVLFDLPFLQQELKAAGFPP--- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R LD + P S+KL DLA + + H H A +D Sbjct: 110 ------FRGPSLDTVEFSRIAFPTLN----------SYKLGDLADSLSLYHERPHRADSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYD------YRNKNQLRKLIDI---QNMTPLVHVSGMFG 231 + T L+ EK L + Y KN L + + + + H+ Sbjct: 154 AFVTAKLLLACMEKCASLPVVTLEQLVPLSYSLKNDLAGIFEDILEEKRRHIEHLPPDME 213 Query: 232 ASRS 235 R Sbjct: 214 VYRG 217 >gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] Length = 238 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 64/205 (31%), Gaps = 32/205 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V +D ET G D + V+V + + F P I Sbjct: 1 MIKTYVAFDLETTGLSEERDSIIEIGAVKV-TDGKVTDRFMEF---LKPAEEISPMITQI 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + I F ++ +NI FD + + Y Sbjct: 57 TGITNEMVAHARNTK----EVIDDFMGFCGEEVLLGHNILFDYKFMKR---------YAC 103 Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + + R D L + R ++ S L+ L + I++ AH A Sbjct: 104 KYQHSFERRGIDTLKIARKVH-------------KDLESRSLEALCVHYQIKNDAAHRAY 150 Query: 179 ADVYATLALVWLIREKKPKLFEYLY 203 D AT L + + L+ Sbjct: 151 HDALATAKLYHCLGHYFEEKEPNLF 175 >gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] Length = 565 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + V+V R + + P +TGI Sbjct: 28 TFVVVDLETTGGSPATSEITEIGAVKV-RGGQVLGEMSSL---VRASTPIPPVVSVLTGI 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E +F ++ +N FD + R Y W Sbjct: 84 TDSMLATAP-TLDEVVPTFLEF---SRGAVLVAHNAAFDLGFLRAAAQACGYPVPAWEH- 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + R + D A + +L LA G H A AD A Sbjct: 139 -----LDTVLIARRV-----------VTRDEAPNCRLASLATLFGSPTEPNHRALADARA 182 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+A++ + E+ L + Sbjct: 183 TVAVLHGLFERLGNLGVTTLE 203 >gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 697 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 28/222 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G ++ + V+V E E F + +T Sbjct: 473 DTYVVFDLETTGFSPDKNKIIEIGAVKV-VHGEITERFSTF---VNPEVPIPYRIEELTS 528 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +E + QF I+ +N FD + R + Sbjct: 529 IRDDMVIDAPKIE----TILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 578 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + ++D + P + FKL +A A G+ N H A D Sbjct: 579 ----KEFTIIDTVALARILLPQLNR----------FKLDTVAKALGVSLENHHRAVDDAG 624 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 T + + D N+ I M Sbjct: 625 CTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIMKMNTYH 666 >gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 449 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 77/258 (29%), Gaps = 37/258 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + +R + A + D + + ++ + + + Sbjct: 1 MMYSII--DIETTGGHASGNRIIEIAIYKFDGE-KITDTYQTL---INPERRIPVFITSL 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + V A+ +R I F + +N+ FD + + Sbjct: 55 TGIDTEMVADAPV-FADVAREITDFTRDS---VFVAHNVNFDYTFVKKELQALNMPYN-- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 L +R G S+ L +L + GI+ N H A D Sbjct: 109 --------LPKLCTVRLSRKIF----------PGLPSYSLGNLCGSLGIDVQNRHRAAGD 150 Query: 181 VYATLALVWLIREKKPKLF-EYLYDYRNKNQLRKLI---DIQNMTPLVHVSGMFGASRSN 236 AT+ L+ + + F +K L + + P F + Sbjct: 151 AEATVRLLNKLLLNDTEGFIPKSLKKNSKETLLPANLPREQFDALPETFGVYYFHDHKGK 210 Query: 237 TALIAPVAWHPRYKDSVI 254 + V K VI Sbjct: 211 ---VIYVGKANNIKKRVI 225 >gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315] gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1] gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS315] gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes SSI-1] Length = 1465 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 193 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G DR + +R + ES + F + EAV I GIT Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTP-GSETESFQTF---VSPGRPIPSEAVAIHGIT 65 Query: 65 PQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + EA + + F + ++N FD + Sbjct: 66 DEMVEGAPGLSEASIA--LASFLKDEEP--MVFHNPSFDLGFLDANMRAIKGSW------ 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N +D + R + G + L LA G+ H A D Sbjct: 116 NVMPVFDTCGLARKAF-------------PGIKGYSLVALARHFGLSGGGHHRALEDCRY 162 Query: 184 TLALVWLIREKKPKLFEYLYD 204 + +L LI E Sbjct: 163 SASLFNLILEAIDGFRCMSLK 183 >gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232] gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232] Length = 1465 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHNLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] Length = 1405 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 53/478 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + +T IT Sbjct: 388 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 443 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + EAE +R +F + +N++FD + R+ Sbjct: 444 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 493 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L L + + H A D AT Sbjct: 494 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 540 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L++ + + FE L + + ++ T + ++ ++ L++ Sbjct: 541 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 600 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y++ + R S +F ++ ++ Sbjct: 601 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 658 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVD 357 + P + + D ++ E L + + + Y P +++ Sbjct: 659 VQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQELNIPVVATGDCHYLNPEDKIYREIL 718 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 Q T E L N D N + K Sbjct: 719 IAAQRSNPNRNKSQPKLHFYSTQ-EMLDAFNFMGEDV-----AKEIVIDN-----TNKIA 767 Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + E K L I++ ++ L + E G + + + + L +I Sbjct: 768 DEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPLPKIVKDRIELELNSIIS 825 >gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1465 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 52/455 (11%), Positives = 112/455 (24%), Gaps = 50/455 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPH 410 L G + + L ++ ++ L +L ++ +N Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKVHFRTTNEMLDEFTFLGKDLAYQVVVQN--- 812 Query: 411 TLSEKEKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 ++ E K L I++ + + L Sbjct: 813 --TQDMADRIEEVEVVKGDLYTPYIDKAEETVAEL 845 >gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429] gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096] gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429] gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096] Length = 1465 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC] gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC] Length = 232 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 69/234 (29%), Gaps = 30/234 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + YD ET G + DR + A ES + + EA I Sbjct: 1 MPALIFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTL---VNPEIPIPAEATKIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E ++ +F N ++ +NN FD R+ Sbjct: 54 GITTAEVADAPR-FPEAYQKFIEFCGTDN-ILVAHNNNAFDYPLLVRECRRHGL------ 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D ++ + D LQ L G E AH A DV Sbjct: 106 ---SEPQLRTIDSLKWAKKYRTDL----------PQHSLQYLRQVYGFEENQAHRALDDV 152 Query: 182 YATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + + ++++ L + + + PL V + A Sbjct: 153 ITLYRVFSALVGDLSPDQIYDLLNETCHPRIFKMPFGKYKGKPLSEVPSSYIAW 206 >gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium QM B1551] gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium QM B1551] Length = 933 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FV+ D ET G D+ QFA V V + +E F P Sbjct: 1 MNKRFVVVDLETTGHSPKQGDKMIQFAAVIV-EDGKIVERFSSF---LNPGMDIPPFITQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I + E E S +I + +N+ FD + + Y+ ++ Sbjct: 57 LTNIQNDMVKDAPLFE-EISPKIIELLDD---AYFVAHNVAFDLTFLQEELYQCGEETLY 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S +D + P +KL LA IEH N H A + Sbjct: 113 NS---------TVDTVELARILLPTVD----------GYKLSQLAEYLHIEHENPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T ++ L+ EK KL Sbjct: 154 DAEVTARILLLLIEKLKKLPLTTLK 178 >gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 677 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 27/221 (12%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+++D ET G + D+ Q VR+ + S E F + PE++ G Sbjct: 483 TFIVFDTETTGLQPSQGDQIVQIGAVRI-VNGRIL-SGESFNRIVNPGRVIPPESIKFHG 540 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + F + ++ +N FD + R + Sbjct: 541 ITDDMVKDKP-PLGVVLPQFKAFAAD---AVLVAHNAAFDLKFLRMNERQFG-------- 588 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++ + D T L + GI + H A D Sbjct: 589 ------------LKFDNPVLDTMMLSNYLDGPETGHSLDAICDRLGISITDRHTALGDAI 636 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 T A++ + + K + + Sbjct: 637 VTAAVLLNQIDALESRGITTLEQVVKELDMNMALHERQRAF 677 >gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] Length = 1428 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 53/478 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + +T IT Sbjct: 411 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 466 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + EAE +R +F + +N++FD + R+ Sbjct: 467 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 516 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L L + + H A D AT Sbjct: 517 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 563 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L++ + + FE L + + ++ T + ++ ++ L++ Sbjct: 564 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 623 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y++ + R S +F ++ ++ Sbjct: 624 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 681 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVD 357 + P + + D ++ E L + + + Y P +++ Sbjct: 682 VQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQELNIPVVATGDCHYLNPEDKIYREIL 741 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 Q T E L N D N + K Sbjct: 742 IAAQRSNPNRNKSQPKLHFYSTQ-EMLDAFNFMGEDV-----AKEIVIDN-----TNKIA 790 Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + E K L I++ ++ L + E G + + + + L +I Sbjct: 791 DEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPLPKIVKDRIELELNSIIS 848 >gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155] gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155] Length = 261 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 27/201 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D ET G + DR + ++V ++ ++ + + EA ITGIT Sbjct: 9 IVFFDLETTGLNPTEDRIIEICCIKVHPDGKR----DIKTRRVNPEKPISSEASEITGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ I++FF I GYN +RFD F R Sbjct: 65 DEDVKDEP-TFKQMAKGIYKFFE--GCDISGYNIMRFDLRVLTEEFKRAGI-------SF 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S DL+DV R + L + AH A+ DV AT Sbjct: 115 DASAHDLVDVQRIFH-------------KKEPRTLEAALRFYCKKDLEGAHAAENDVIAT 161 Query: 185 LALVWLIREKKPKLFEYLYDY 205 + ++ + L + Sbjct: 162 IDVLEGQLDMYDDLENDMAKL 182 >gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] Length = 1415 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 66/401 (16%), Positives = 119/401 (29%), Gaps = 41/401 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V++D ET G D+ + V++ E L + +T Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKI-VDGIITERFSQL---INPQMLIPEKVQELTR 454 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E E + + + F ++ +N +FD + R +F N D Sbjct: 455 ITNALVENEPTIE-EVAPKFYDFIKDS---VLVAHNAKFDTAFIRRVFKENDLDFI---- 506 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L RA F L L G+ V AH A D Sbjct: 507 ---NPILDTLSFARA-------------TVKDTKKFNLATLCKKFGVSLVGAHRAVNDAE 550 Query: 183 ATLALVWLIRE--KKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT L + PK ++ K+Q+ I ++ ++ + ++ L+ Sbjct: 551 ATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSIL--TKNEEGLKNLYKLV 608 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + + + +L R + S + +F + + V K Sbjct: 609 SDSHMKYFNRVAKVPRSLINKYRKGLLIGSGDESGEIFNAFFRNLEIDEVE-KIASFYDY 667 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PID N + + NL A N Y D+ ++ Sbjct: 668 LEIQPIDNFIPSLLRNKLTREDIIEINKKICKVGENLGIPVIATSNCFYLDEKDDLVRRI 727 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 + L +D L E + Sbjct: 728 ILNGKVGAPDY--------NAKIKQKLYFRSTDLMLEEFLY 760 >gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo] gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo] Length = 1465 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 95/404 (23%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] Length = 1466 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 60/454 (13%), Positives = 121/454 (26%), Gaps = 48/454 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 427 TYVVFDVETTGLSAINNDLIQIAASKM-YKGNIIEQFDEF---INPGHPLSTFTTELTGI 482 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F I+ +N FD + + R+ Sbjct: 483 TDNHLIGAKP----ILKVLEAFQDFCQNTILVAHNASFDVGFMNANYERHQLPLI----- 533 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 534 -NQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 579 Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+++ ++ + L D K + ++ L++ Sbjct: 580 TGRLLFIFLKEAREKHGLTNLLDLNTKLVAEDSYKKARVKHATIYVQNQIGLKNIFKLVS 639 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + +Y + V + + + L L V + + Sbjct: 640 --LSNVKYFEGVPRIPRTVLDQYREGLLLGTGCSEGEVFDAVLTKGVEAAAELANYYDFI 697 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 +MP D + + L+ L A N Y + + ++ Sbjct: 698 EIMPPALYNPLIARELIKDQEGVQKIIFDLIEVGKRLNKPVLATGNVHYIEPEEAIYREI 757 Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHT 411 P L + ++ L EL ++ +N Sbjct: 758 IVRSLGQGAMINRPIGRGEGAQPAPLPEAHFRTTNEMLDDFAFLGKELAYQVVVQN---- 813 Query: 412 LSEKEKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443 ++ E K L I++ + + L Sbjct: 814 -TQDFADRIEEVEVVKGDLYTPFIDKAEETVAEL 846 >gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] Length = 1396 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 67/478 (14%), Positives = 143/478 (29%), Gaps = 56/478 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D ET G D + + + + E E+ F A + PE + +TGIT Sbjct: 371 IVCFDIETTGLDKRREVIIEIGAAVL-KNGEVTETFNTF---VAPGRILSPEIIHLTGIT 426 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + E R F + +N FD + + Sbjct: 427 DEMLVGAP-SQEEALRAFLDFV---GDRPLAAHNAEFDMGFISTGCRKYGIPF------- 475 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L + + + +KL +A + N H A D Sbjct: 476 TNPSIDSLILAQ-------------NLLPELGKYKLDIVAEYLQLPAFNHHRASDDAATV 522 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKL---IDIQNMTPLVHVSGMFGASRSNTALIA 241 ++ EK + + + N + + L+ ++ R+ LI+ Sbjct: 523 AYMLPPFFEKLEAMGVHRLEDINAAMPKLRKGGKARRQPKHLIVLAKNQTGLRNLYKLIS 582 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + ++ ++ + R + S A LF + K + + Sbjct: 583 LAHLEHFKRYPIMPKSVINENREGLIIGSACEAGELFQAVTADKDWEELK-RIASWYDFL 641 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + + + N T++R L A + + ++ + Sbjct: 642 EIQPICNNMFMLRKGMVRSEEELRDFNRTVVRLGEELGKPVCATGDVHFLDPEDEIYRHI 701 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 ++ + +D L E Y + + + K Sbjct: 702 LLASKGFE-----------DADEALPIYFKTTDEMLQEFA--YLGKEKAYEVVVKNTNLI 748 Query: 421 LEHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + L ++E+ +L+ L + E GDE + +++ + L +I Sbjct: 749 ADWCDPIKPLPQGLFAPKLEDSDGELKRLVWGKAHELYGDEPPQIVVDRINVELGDII 806 >gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] Length = 1439 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 53/478 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + +T IT Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + EAE +R +F + +N++FD + R+ Sbjct: 478 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 527 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L L + + H A D AT Sbjct: 528 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 574 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L++ + + FE L + + ++ T + ++ ++ L++ Sbjct: 575 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y++ + R S +F ++ ++ Sbjct: 635 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 692 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVD 357 + P + + D ++ E L + + + Y P +++ Sbjct: 693 VQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQELNIPVVATGDCHYLNPEDKIYREIL 752 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 Q T E L N D N + K Sbjct: 753 IAAQRSNPNRNKSQPKLHFYSTQ-EMLDAFNFMGEDV-----AKEIVIDN-----TNKIA 801 Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + E K L I++ ++ L + E G + + + + L +I Sbjct: 802 DEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPLPKIVKDRIELELNSIIS 859 >gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] Length = 940 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 82/293 (27%), Gaps = 45/293 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + F++ D ET G VA DR Q V + E IE F + P Sbjct: 1 MNDRFIVVDVETTGHSVAKGDRIIQIGAVVI-ENGEIIERFASF---VNPEVEIPPFIEE 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI E + + F +N+ FD + +N F Sbjct: 57 LTGINQAMVEHAP-TFKELAVELLPLFENVG---FVAHNVPFDLSFLKNQFELIGEKFP- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +D +++ R S+KL LA + G+ H H A + Sbjct: 112 -----KMKCYDTVELSRM-------------LLPKEESYKLGHLAFSLGLSHDRPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNT 237 D T + NK + L+ ++ + P+V S + + Sbjct: 154 DAEVTAEI--------------FLYLLNKLKGLPLLTLEQLIPIVRYFRSSLEPMISAFI 199 Query: 238 ALIAPVAWHPRY-KDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289 + + D L + EL Sbjct: 200 QEKVMLGVNDAQEFDCYRQLALKKQPEHDNEPAPESFKGTFSEFRSELFSADK 252 >gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO] gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO] Length = 1379 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 66/478 (13%), Positives = 139/478 (29%), Gaps = 52/478 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +VI D ET G + V + + + F + V T Sbjct: 367 QERYVIVDIETTGLHPMFSEIIEIGAVAI-ENGQITDEFHSF---VKPSEKLNAFTVQFT 422 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT Q +E + +F + +N FD + R ++ ++ Sbjct: 423 KITDQMLANQPSIE----EVLPKFMEFCKDTTLVAHNANFDYRFLRYWIEKSLKLNWE-- 476 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D L + + + +S+ L+ LA + + H A D Sbjct: 477 ----PAVIDTLALAKKLVRL--------------SSYNLEKLASHFKLGPFSHHRASEDA 518 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T + + + + + Q + + ++ LI+ Sbjct: 519 KVTAKIFLELLKLLKERKITTFKEIESLQKESTLRQSKPFHTTIIVQTKEGLKNLYKLIS 578 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDS------VQLAKRLFTSHDELKGLVPVPIKEV 295 H +Y SV S + L +L + + T +E + + + Sbjct: 579 N--AHVKYFYSVPRIPKSELQALRAGLLIGSACVGGELIQEMLTGANESEIEEKMAFYDF 636 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 L+P+ ER + + E + + + + Sbjct: 637 VEVMPLDLLPVTNDLGLTRERLKELYIKLYEIARKINV------PVVMTGDVHFLDPEDE 690 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 ++ + + LRT E L F D FP+ ++E Sbjct: 691 KIRKVLQAPQQENISEQPAAYLRTTDEMLKAALEIFEDTNKAY----KVVVEFPNQIAES 746 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 ++ +K L RIE +++++++ + + G E + L L +I Sbjct: 747 VEKIV--PLEKKLHTPRIEGAEDQVRTIAMQRAEQLYGTPLPELVERRLNRELDAIIN 802 >gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51] gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1447 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 33/280 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G A ++ + +++ + + I+ C + V +T I Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKI-QGGKIIDQF---GCFVNPEKPIPARVVEVTNI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +I F ++ +N FD + ++ YD Sbjct: 479 TDDMVRDAETID-QVFPKILNFIE---GSVLVAHNADFDMGFLKHNAKVLGYDFDYT--- 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + + ++KL +A GI+ AH A DV Sbjct: 532 ----YLDTLSLAK-------------ELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGT 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238 T+ + ++ + + + + + L + A ++ Sbjct: 575 TVKVFNIMVDMLKERGVETLEDIDLKAADEAARKDEYKKLKTYHAIILAKDYTGLKNLYK 634 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278 L++ YK I +L L S L+ Sbjct: 635 LVSYSHLDYFYKKPRILKSLYKKYSEGLILGSACSEGELY 674 >gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense DCB-2] Length = 1447 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 33/280 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G A ++ + +++ + + I+ C + V +T I Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKI-QGGKIIDQF---GCFVNPEKPIPARVVEVTNI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +I F ++ +N FD + ++ YD Sbjct: 479 TDDMVRDAETID-QVFPKILNFIE---GSVLVAHNADFDMGFLKHNAKVLGYDFDYT--- 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + + ++KL +A GI+ AH A DV Sbjct: 532 ----YLDTLSLAK-------------ELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGT 574 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238 T+ + ++ + + + + + L + A ++ Sbjct: 575 TVKVFNIMVDMLKERGVETLEDIDLKAADEAARKDEYKKLKTYHAIILAKDYTGLKNLYK 634 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278 L++ YK I +L L S L+ Sbjct: 635 LVSYSHLDYFYKKPRILKSLYKKYSEGLILGSACSEGELY 674 >gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] Length = 1439 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 106/331 (32%), Gaps = 31/331 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + +T IT Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + EAE +R +F + +N++FD + R+ Sbjct: 478 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 527 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L L + + H A D AT Sbjct: 528 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 574 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L++ + + FE L + + ++ T + ++ ++ L++ Sbjct: 575 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y++ + R S +F ++ ++ Sbjct: 635 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 692 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ 333 + P + + D ++ E L + + Sbjct: 693 VQPPAAYSQLIADELIKDEEQLEEILKNIYK 723 >gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium DSM 319] gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium DSM 319] Length = 933 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FV+ D ET G D+ QFA V V + +E F P Sbjct: 1 MNKRFVVVDLETTGHSPKQGDKMIQFAAVIV-EDGKIVERFSSF---LNPGMDIPPFITQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I + E E S +I + +N+ FD + + Y+ ++ Sbjct: 57 LTNIQNDMVKGAPLFE-EISPKIIELLDD---AYFVAHNVAFDLTFLQEELYQCGRETLY 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S +D + P +KL LA IEH N H A + Sbjct: 113 NS---------TVDTVELARILLPTVD----------GYKLSQLAEYLHIEHENPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T ++ L+ EK KL Sbjct: 154 DAEVTARILLLLIEKLKKLPLTTLK 178 >gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952] gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952] Length = 911 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 32/233 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + I D ET G + DR QF V V E + P+ +T Sbjct: 1 MTTYAIVDIETTGTNPKEDRIFQFGCVFV-ENGEIVGRFAT---MIHPGRSISPQIQHLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 T + E + + I++ S + +NI FD + R + Sbjct: 57 HTTNKDVRHSPYFE-DVAPTIYELLS---GTVFVAHNIHFDYRFLNAELERCGCE----- 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G+ H H A +D Sbjct: 108 -RLQLKGIDTVELAQI-------------LFPTEISFRLSDLSESLGLAHERPHQADSDA 153 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 T L + ++ +L +L M ++ S+ Sbjct: 154 EVTAQLFIALEQRLA-----SLPLCTIKELSRLSKTLTMQTGEFIAKYVQYSK 201 >gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394] gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394] Length = 1465 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 46/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + + + + L L + + + Sbjct: 639 LSNIKYFEGIPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 584 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E + + +TGI Sbjct: 32 TFVVVDLETTGTRTTDSGITEIGAVKV-RGGEVLGEFQSL---VNPGREVPAFVARLTGI 87 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + F + C++ +N FD + + Y Sbjct: 88 TTAMVSTAPSIDL----VLPSFLEWAHDCVLVAHNAPFDVGFLKAAAAGLGYPWP----- 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G D + + R + D A + KL LA H A AD A Sbjct: 139 -GFPVVDTVPLARRVVP-----------KDEAPNHKLATLAHLFRARVTPEHRALADARA 186 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ + + Sbjct: 187 TVDVLHGLLDRLGAMGVQHLE 207 >gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750] gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750] Length = 1465 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 46/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF------KAIYNKPYTSSSQDVD 357 MP + D + + L + ++ + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKLVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1] gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum reducens MI-1] Length = 1426 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 63/477 (13%), Positives = 119/477 (24%), Gaps = 58/477 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D+ET G D + V+ E++ E +TGIT Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKY-LNGEEVGRFGTL---VNPKKEIPFEVTKLTGITD 470 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + +F ++ +N FD + R + + Sbjct: 471 EMVKDAPDG-KEALTALSEFM---GEAVLVAHNASFDLSFLRVGLRKYL------KQEVT 520 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N D L V R + KL L IE N H A D AT Sbjct: 521 NPAIDTLGVARV-------------LFPNLKNHKLNTLVKEFKIELTNHHRAVDDASATA 567 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 L + K + + + + + ++ LI Sbjct: 568 KLWQIFLRKLAEQEISDVKTLSGMGQGVNQEKLKSRHVTILVKDEVGLKNLYQLIT--LS 625 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK----EVHLNKCP 301 H RY ++ + L + + G ++ + Sbjct: 626 HLRYFHRQPRIPRRELVKYREGLLIGSACEAGEFYQALMAGASQEELEDIASFYDYLEIQ 685 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L ++ + D K + L + + + + Sbjct: 686 PLGNNEFMIRTGQVNGEEDLKEINRKIVALGSKLGIPVVATGDVHFLNPEDEVYRRILMA 745 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN-FPHTL---SEKEK 417 F + + L ++ L E Y R + Sbjct: 746 GKGFD-------------DADNQAPLYFKTTEEMLKEFS--YLGRETAFQVVVSNPRNIA 790 Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 L IE + ++ + + E G+ E + + + L+ +I Sbjct: 791 SMIQAFKPIPDTLHPPYIEGAEQQITDMTLQRARELYGEPLPEVVQQRVDKELKSII 847 >gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] Length = 737 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 64/190 (33%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G + DR + V+V R + +E + V +TGIT Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKV-RNHQLVEQWHSL---INPQRPIPAKIVELTGIT 618 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q V E + F I +N+ FD + + F R Sbjct: 619 NQMVRDAPVFH-EIADSFMAFMGDG---IFVAHNVNFDYGFLSSEFERLER--------- 665 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ L + R G TS+ L L GIE + H A D A Sbjct: 666 -RFRFPKLCTCVGMR----------RRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAA 714 Query: 185 LALVWLIREK 194 L+ LI K Sbjct: 715 AHLLNLINTK 724 >gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP] gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma pulmonis] Length = 1435 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 154/476 (32%), Gaps = 51/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+YD ET G L+ QF + + IE+ F D +TGIT Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVI-KNGRIIETHHFF---IKPKSKLDSFTTKLTGIT 459 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G E +I F I+ +N FD + + F N + Sbjct: 460 QEHL-EKGYELQEALEKISSIFK---ARIMVAHNAAFDHNFLKQKFIDNNIEFEE----- 510 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 D L++ + + S++L ++A + + AH A D Sbjct: 511 -MISIDTLNLAKVLNPIY-------------RSYRLGEVASKLSVVYDPSIAHRADYDSS 556 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG-----ASRSNT 237 + L + L+ N K + ++ ++ Sbjct: 557 VLTNIFILQMSHLKEKGINLFKELNSLSSEKFYSKMFAKDISIIAKNQAGLKELFKINSD 616 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 L +P+ I + + + L+S + K LF++ +++ + + Sbjct: 617 VLTKYYFANPKMFWEDIKRSKNLLIG-SGGLNSPLIDKLLFSTQEDVLNEIDK--YDYIE 673 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSS 352 P + K ++ I ++ ++ + + + Sbjct: 674 IPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKNKIIVAIGEPRYNEKWQKIIHEIYIN 733 Query: 353 SQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410 S +++ L+ F D ++I +T E + + PEL +N P+ Sbjct: 734 STGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQEFSFLYD----PELIEEIVVKN-PN 788 Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 +S + ++ ++ K L + ++ KL+ L E + + L + + ++ Sbjct: 789 LISSQIEK--IQVIKDKLYTPKFDDSHIKLKKLVYENAWKKYGKNLPEIIEQRIEK 842 >gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 711 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 28/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G + + +R + V++ ++++ + +TGI+ Sbjct: 543 YVVVDIETTGGNSSYNRITEIGMVKL-VGGKEVDRFQTL---LNPQRRIPSNITRLTGIS 598 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + + F + +N+ FD + + F R Sbjct: 599 DDMVADAPL-FAEVAEHVANFTED---AVFVAHNVNFDYGFIKQEFARLEQ--------- 645 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + R + +R + G S+ L +L IE H A +D A Sbjct: 646 -SFRRPKMCTVREMR----------RTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAA 694 Query: 185 LALVWLIREKKPKL 198 L+ L EK + Sbjct: 695 AELLKLAFEKDDEQ 708 >gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] Length = 461 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 73/205 (35%), Gaps = 25/205 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++V+ D ET G D + + + +++ I+S + F +P + IT Sbjct: 143 PKNYVMVDVETTGLDPSNNEIIEIGALKI-TDGNVIDSFKTFVKPIN--SIPS-KITSIT 198 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT F S + I+GYN + FD + + +Y+NF + Sbjct: 199 GITNNMVADAP-SIKTVLMEFKSFLS--DNYIVGYNVL-FDIKFLHDSYYKNFGNC---- 250 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +DV+R + A + KL + I+ H A AD Sbjct: 251 ---DWLSHDYIDVLRFCRKYF----------KSAPNHKLTTMIDYLNIDVKEHHRALADC 297 Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206 YATL +E+ K Sbjct: 298 YATLECYNNCKERALKENIRFELNS 322 >gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005] gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005] Length = 1465 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1012 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 67/473 (14%), Positives = 136/473 (28%), Gaps = 49/473 (10%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 ++D ET G D+ + V++ + ++ + V +TGI+ Sbjct: 2 VFDIETTGLSSRNDKITEIGAVKI-KNGMIVDRFSQL---INPEKEIPQVVVDLTGISNA 57 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + +E I +F+ ++ +N +FD + R + N N Sbjct: 58 MVENEPTIE----EVILKFYDFAKDAVLVAHNAKFDISFIRREYANN----------NLV 103 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +LD + A D F L L G+ V AH A D AT Sbjct: 104 FNHPILDTLVLARATMSDM----------KRFNLGTLCKNLGVSLVGAHRAVNDAEATAE 153 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 + + EK + E+ ++ NK + + L+ + ++ LI+ Sbjct: 154 VFIKLIEKIKREEEFNFENLNKEIVNIDSKRLFESSLLLLVQNEIGLKNLYMLISDSHMK 213 Query: 247 PRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPI 306 + + +L R + S LF + + + ++ + P Sbjct: 214 YFNFVAKVPRSLLDKYREGILVGSGNSNSELFDAIYRMCPQEEL-LEIAKYYDFLEIQPA 272 Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFA 366 + N ++ L A + Y S+DV ++ Sbjct: 273 SDNILAIEDGKYTIEDIREINKKIISIGEELNIPVVADSDTYYLEESEDVLRRIVLNGKP 332 Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426 R ++ L E Y ++ + + K Sbjct: 333 GRPDPRASRNQ--------KFYFKTTEEMLDEFS--YLGQDKAYEVVVTNTNKLKNSIKD 382 Query: 427 M--LTRSRIEEYKNKLQSLSGEYK--------GDEGKEGLINALYEYLQWVIP 469 + + E GDE + + + L + L+ +I Sbjct: 383 IKPIPDGTYPPVIEGSDDSLREMTYKKAHDIYGDELPKIVEDRLEKELKSIIS 435 >gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS] gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS] Length = 1465 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + + L + + Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L ++ L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor alocis ATCC 35896] Length = 1407 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 51/330 (15%), Positives = 99/330 (30%), Gaps = 31/330 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D + V++ + E I+ F +T IT Sbjct: 390 FVVFDIETTGFSSINDAIIEIGAVKI-KNREIIDRFSEF---VNPKREIPYHITELTSIT 445 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +E E R +F + +N FD + + R R Sbjct: 446 NEMVCNEDTIE-EVLPRFMEF---SKDSVFVAHNSDFDTSFIKENCKRLDLLYDRI---- 497 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D + A D KL +A GI N H A D AT Sbjct: 498 ------AIDTVELSRALLTDL----------KRHKLNVVAKKLGISLENHHRAVDDAEAT 541 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + N+ + ID + + ++ LI+ Sbjct: 542 AQIFLKFLTMIEECGVTTLAEVNQKITKTNIDTIRDKSITIFAQNLVGLKNLYKLISFSH 601 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF--TSHDELKGLVPVPI-KEVHLNKCP 301 Y+ I + + R + + +F + +G+ P + +++ Sbjct: 602 IKHFYRIPRILKSELVEHREGLLIGTGGENGEIFGGVREEVERGVDPSVVDEKIKFYDFA 661 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL 331 +MP+ + R+ ++ + Sbjct: 662 EVMPVSTYRSFFSARFDMNETDLRRINQRI 691 >gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] Length = 236 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 68/225 (30%), Gaps = 32/225 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ +D ET G D + V+V+ + ++ F + Sbjct: 1 MRKTYISFDLETTGLSEEKDYIIEIGAVKVN-NGKVVDRFARF---LKPPISISNTITNL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT G + I F + + +NI FD + + R Sbjct: 57 TGITDDMVKNAGDTQ----ETIKDFIKFCDGYFLLGHNIMFDYKFMKTYAARFGLHF--- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R ++ S L+ L I + +AH A D Sbjct: 110 ----EKEGIDTLKIARKVH-------------KNLESKSLESLCTYYNIVNASAHRAYHD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD----YRNKNQLRKLIDIQNMT 221 AT L ++ L+ +++K+ Q + Sbjct: 153 ALATAKLYHMLAHDFEVSEPSLFTPETLCYKPKKVQKITKKQLIY 197 >gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] Length = 929 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 547 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G DR + A +R+D ++ + A +I GIT Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWST---RLNPQRTV--GATWIHGIT 103 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + ++ Q + +G+N RFD + R +D+ + Sbjct: 104 DADVAHAP-SFADVAAQVAQRLT--GAVFVGHNA-RFDAGFVLAELTRAGWDAPEPT--- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 I+ W A+S +L D+A A GI +AH A D AT Sbjct: 157 -------------IWCTQAASHHW---LPDASSRRLVDVAAAAGISLTHAHSALGDARAT 200 Query: 185 LALVWLI 191 A++ Sbjct: 201 AAMLTRY 207 >gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] Length = 1465 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 95/404 (23%), Gaps = 36/404 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + +E + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R+ Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L + + H A D A Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ + + L + + Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + L L + + + Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLFLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357 MP + D + + L + L + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 L G + + L + ++ L E F Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM 20162] gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM 20162] Length = 610 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 26/189 (13%) Query: 4 HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV+ D ET G D + V+V R E + + P +TG Sbjct: 21 TFVVVDLETTGGSPKGGDAITEIGAVKV-RGGEVLGEFATL---VDPERGIAPHITHLTG 76 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + F ++ +N RFD + + Sbjct: 77 ITTAMVTGAPT----IASVLPAFLEFAQGAVLVAHNARFDIGFLKAAAAATGTPWP---- 128 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + + D A S KL ++A E H A D Sbjct: 129 -------------KPQTLCTVQLARRVLTRDEAPSVKLSEMARLFRAETTPTHRALDDAR 175 Query: 183 ATLALVWLI 191 AT+ ++ + Sbjct: 176 ATVDVLHGL 184 >gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] Length = 929 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 77/241 (31%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ L Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRNLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] Length = 929 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] Length = 929 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecium DO] gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68] gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68] gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] Length = 929 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 929 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] Length = 929 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] Length = 1424 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 139/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P ++ ++ D K E N+ L ++ + + + + L Sbjct: 680 PPAAYQQLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNIIADKIE 790 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844 >gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] Length = 1421 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 57/403 (14%), Positives = 116/403 (28%), Gaps = 50/403 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G A ++ + V++ + ++ + + +T IT Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-QIVDEFNQL---INPEIPIPEKITELTSIT 457 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + +F C + +N FD + + + Sbjct: 458 NEMVKDMPKIE----EVLPEFLKFVGDCTLIAHNADFDMGFIKKNCLDLRINPI------ 507 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L RA + + KL L + N H A D AT Sbjct: 508 -RTYIDTLAFARA-------------LEPHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + + + K NK I + + ++ L+ A Sbjct: 554 GEVFICMVKDLEKRGVKFDININKIDSDWSISKRESHTATIYAQNLIGLKNLYKLVT--A 611 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + +Y G S + + L + +L K + + + L + + L Sbjct: 612 SNLKYFYREGGIPKSELNKRREGLVIGSGNEDGELIKAILGFESD-EKLDEIISRYDFLE 670 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 P L K + + L ++ + Y K + + + Sbjct: 671 VQPPLYYDGVKSKRMSFNLKSCEELTRKLYDLSKKHN--KPLVADSYAKYFEKTDYIFRN 728 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 + +G + E+ TL +D + E F Sbjct: 729 IILEGQPRKIYG-----------EKFPTLFFRTTDEMMNEFSF 760 >gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408] gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408] Length = 929 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|330898430|gb|EGH29849.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT] Length = 173 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 315 ERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIM 373 +R +D L ++ D+ A+Y K +S+D + QLYDGF D DR++ Sbjct: 10 QRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKDDFVASEDPEQQLYDGFIGDRDRRLC 69 Query: 374 DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS-- 431 +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+ W + ++ L Sbjct: 70 EQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQIRWRDFCQQRLRSPEW 129 Query: 432 ----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467 + ++ + + ++ +Y + Sbjct: 130 GAPNTLHDFTAAW--VECSLSAAPEQLEVLRQWQDYANKL 167 >gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733] gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733] Length = 929 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ LI E+ KL + Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178 >gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum V10Sc8a] Length = 1605 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 71/478 (14%), Positives = 134/478 (28%), Gaps = 54/478 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +++D ET G A +R + V++ R E ++ F +TG Sbjct: 589 DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVDRFSTF---VNPMMPIPSNITELTG 644 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + F + + +N +FD + R+ R Sbjct: 645 ITDDMVADAPT--EDVA--VSDFMAFCGNSPVCAHNAKFDVSFIRSAAAR-------MEK 693 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + +A G ++KL +A + + H A AD Sbjct: 694 SFDNPVVDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 + I K + Y + + T + ++ LI+ Sbjct: 741 MLCMIYMHIVNDTRKTAKLEYIGDFNTAFGSVDIKKLPTYHQIILVKNKVGLKNLYRLIS 800 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 YK I +L R + S A LF + E K + Sbjct: 801 ASNLDYFYKKPRIPKSLLSQYREGLIIGSACEAGELFRAILE-KESQEKIEEIASFYDYL 859 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + + N +++ L A + + V ++ Sbjct: 860 EIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRLGKPVVATCDVHFKDPEDAVFREV 919 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 D L +D L E Y + Sbjct: 920 LQAGQGYEDFA-----------NQPPLYFRTTDEMLEEFA--YLGEEKAKEVVITNTNRI 966 Query: 421 LEHRK--KMLTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + + I+ +LQ L + + GD+ E + L + L +I Sbjct: 967 ADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDLPETVEKRLKKELDSII 1024 >gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] Length = 929 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ LI E+ KL + Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178 >gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502] Length = 929 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ LI E+ KL + Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178 >gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021] gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti 1021] gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] Length = 242 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + G+ ++ Q+ T + P + PEA+ + GIT Sbjct: 4 IIFDTETTGLDNREDRVIEIGGIELENQF-PTGRTIHIYINP-GERKVHPEALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + A+ ++ I FF +N FD + F R Sbjct: 62 EFLKDKP-PFADVAQEIVDFF---GDARWVAHNATFDIGFINAEFERLGLPPI-----GS 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 + D L + R + P+ L L G++ H H A D Sbjct: 113 DRVIDTLALARRKHPMGPN--------------SLDALCRRYGVDNSHRTRHGALLDSEL 158 Query: 184 TLALVWLI 191 + + Sbjct: 159 LAEVYIEM 166 >gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec] gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec] Length = 603 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 25/191 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + VRV R + + +TGI Sbjct: 28 TFVVVDLETTGGSPATSEITEIGAVRV-RGGQILGEMSSL---VRPSAPIPAFISVLTGI 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E +F ++ +N FD + R Y + W Sbjct: 84 TGAMVATAPGI-GEVVPTFLEF---ARGAVLVAHNAPFDLGFLRAAATACGYPAPAWEH- 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD +R D +L LA G H A AD A Sbjct: 139 --------LDTVRIARRV--------ISRDETRDCRLSSLAALFGSATQPNHRALADARA 182 Query: 184 TLALVWLIREK 194 T+ ++ + E+ Sbjct: 183 TVDVLHGLFER 193 >gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12] gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12] gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] Length = 929 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ LI E+ KL + Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178 >gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus] gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] Length = 1465 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 54/447 (12%), Positives = 111/447 (24%), Gaps = 34/447 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIIEQFDEF---INPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R Sbjct: 482 TDNHLVGA-KPIQQVLEAFQAF---CQGTILVAHNASFDVGFMNANYDRYGL------AK 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y L L + + H A D A Sbjct: 532 ISQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + + L + + Sbjct: 579 TGRLLFIFLKEAREKHGITNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + + L L + + + Sbjct: 639 LSNVKYFEGVPRIPRTVLDQYREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L + + A N Y + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAQKPVLATGNVHYIEPEDAIYRDIIV 758 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418 P L + ++ L + F + A ++ Sbjct: 759 RSLGQGAMINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGKDLAYEVVVKNTQALAD 818 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQSL 443 E K L I++ + + L Sbjct: 819 RIEEVEVVKGDLYTPYIDKAEETVAEL 845 >gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195] gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195] Length = 1424 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 680 PPATYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844 >gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] Length = 1416 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 399 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 454 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 455 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 504 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 505 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 551 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 552 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 611 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 612 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 671 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 672 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 731 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 732 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 782 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 783 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 836 >gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 572 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D + V+V + + P+ V +TGI Sbjct: 25 TFVVFDLETTGTKPGPDGITEIGAVKVRA-GQVLGEFATL---VNPGTPIPPQIVELTGI 80 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E R + F + ++ +N FD + + + Y Sbjct: 81 TQAMVYDAPRIE----RVLPAFLEFISGAVLVAHNSGFDTSFMKAACEGHGYVWP----- 131 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R + + + A S++L L++ G H A D A Sbjct: 132 ------------RPTVVCTVKLARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARA 179 Query: 184 TLALVWLI 191 T ++ + Sbjct: 180 TTDVLHAL 187 >gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] Length = 929 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T L+ LI E+ KL Q+ +L M + + + + Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210 Query: 242 P 242 P Sbjct: 211 P 211 >gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis] gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114] Length = 1437 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 65/477 (13%), Positives = 131/477 (27%), Gaps = 47/477 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G LD +F V + + + F V + I Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIV-KNNTITQKIQFF---LQTKRELSAFTVESSHIN 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G + E ++I++ I +N FD + + F + D+ Sbjct: 463 NEMLKN-GYAQEEGIKKIYEILKDK---IAVAHNANFDINFCKEKFSKLGLDN------- 511 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ LD + Y +PD + S + AH D Sbjct: 512 --SKIFGLDTLALSYFLNPD--------EFRHSLGYVAKRFNIIYDTTVAHRGDYDANVL 561 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA-LIAPV 243 + + +K K + L N + I T + A +I+ Sbjct: 562 AKIWIKMIDKLAKDYNILNSQDLNNVDSQKILSHKFTYETRILVKNQAGLKKLFKIISRS 621 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 K+ I + G+ + + + +K + P + Sbjct: 622 LTSQFKKNPQIYFDQLGNDEDLFFGSATNQSYVWDQVFTGTNENLLNSLKYYDYIELPPI 681 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 Y + L+ + +L A+ + Y + Q + ++Y Sbjct: 682 SSFQYMIDSNHVTLDELKFLYK---DLISKAKSLNKMCVAVSDCRYIYNYQRLIHEIYIE 738 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF----RYRAR---NFPHTLSEKE 416 + + PE L E F P+ ++ + Sbjct: 739 APTLGGGLHWLKKRPSHPEFRYLTTR----EMLKEFAFLNDSYLINEIVIENPNKIANEI 794 Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQS-----LSGEYKGDEGKEGLINALYEYLQWVI 468 + K L + KL+ L Y + ++ + + L +I Sbjct: 795 SSNIQ-VIKDKLYVPTFDNSPQKLREVVYRTLKERYGDNPDPI-IVKRIEKELNPII 849 >gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1] gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 1420 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 735 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 736 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 786 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 787 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 840 >gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15] gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15] Length = 929 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ LI E+ KL + Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178 >gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] Length = 1420 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 735 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 736 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 786 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 787 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 840 >gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] Length = 1424 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844 >gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] Length = 929 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + DR QF V + + + +T Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + E + ++ I+ + I +NI FD + + R Sbjct: 59 GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + SF+L DL+ + G H N H A +D Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ LI E+ KL + Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178 >gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 1449 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 49/401 (12%), Positives = 112/401 (27%), Gaps = 44/401 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G ++ + +++ + + I++ F + V +T I Sbjct: 425 TYCVLDLETTGFSPVTEKITEIGIMKI-KDGKVIDTFSTF---VNPEKPIPLRVVEVTNI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + ++ F ++ +N FD + ++ D Sbjct: 481 TDDMVRNAETIE-QVFPKMLDFIKDS---VLVAHNAEFDVGFLKHNAKILGCDF------ 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + + ++ ++KL +A GI+ AH A DV Sbjct: 531 -DFTYVDTLSLAQEVF-------------PDFKTYKLGRIAKNLGIKVEVAHRALDDVAT 576 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238 T+ + ++ EK + + + + L + A ++ Sbjct: 577 TVKVFNVMLEKLKERGAENLKDIDIYGRDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYK 636 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 L++ YK I +L L S L+ + L + Sbjct: 637 LVSYSHLDYFYKKPRILKSLYKKYSEGLILGSACSEGELYQA-ILLGKSDEEIEELAKGY 695 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + E + ++ + +D Sbjct: 696 DYLEIQPLGNNDYLVRTEQVPGKEYLEEINKKIVALGEKLNKLVVATGDVHFMDPEDEIY 755 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + + L L ++ L E Sbjct: 756 RRILEAGQGFK----------DADNQAPLYLKTTEEMLEEF 786 >gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] Length = 584 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E++ V P +TGI Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L +E + + F + ++ +N +D + + R+ Y Sbjct: 87 TEAMLLPAPSIE----QVLPSFLEFVSDAVLVAHNAPYDVGFLKAACARHGYRWP----- 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + R + D + KL LA H A D A Sbjct: 138 -NPRVLDTAALARRV-----------LLRDEVPNRKLGTLAAYFRAATTPTHRALDDARA 185 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 186 TVDVLHGL 193 >gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 577 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V+V R E + P V +TGI Sbjct: 28 TFVVVDLETTGGSSESDAITEIGAVKV-RGGEVLGELGTL---VDPGRAIPPYIVELTGI 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + F ++ +N FD + + R Sbjct: 84 TTAMVRTAPRID----TVLPAFLEFAGGAVLVAHNAGFDVGFLKAAAARQGLPW------ 133 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ +L ++ D A S KL LA G + H A D A Sbjct: 134 ---PKFQVLCTVKLARRVLG--------RDEAPSVKLSALAALLGADTTPTHRALDDARA 182 Query: 184 TLALVWLIREKKPKLFEYLY 203 T+ ++ + + + Sbjct: 183 TVDVLHALIGRVGNQGVHSL 202 >gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] Length = 577 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V+V R E + P V +TGI Sbjct: 28 TFVVVDLETTGGSSESDAITEIGAVKV-RGGEVLGELGTL---VDPGRAIPPYIVELTGI 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + F ++ +N FD + + R Sbjct: 84 TTAMVRTAPRID----TVLPAFLEFAGGAVLVAHNAGFDVGFLKAAAARQGLPW------ 133 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ +L ++ D A S KL LA G + H A D A Sbjct: 134 ---PKFQVLCTVKLARRVLG--------RDEAPSVKLSALAALLGADTTPTHRALDDARA 182 Query: 184 TLALVWLIREKKPKLFEYLY 203 T+ ++ + + + Sbjct: 183 TVDVLHALIGRVGNQGVHSL 202 >gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus clausii KSM-K16] gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16] Length = 942 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ FV+ D ET G + Q V+V + F P Sbjct: 1 MSQSFVVIDLETTGNSPDQGAKMIQIGAVKV-EGCTITDRFSTF---VDPGCSIPPFITE 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + V E + + F + + +N+ FD + Sbjct: 57 LTGITDKDVEGAPV-FREIATDLLAFMEGSS---LVAHNVPFDKGFLEAQLETEGLRL-- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D + S+KL +L+ + ++H H A + Sbjct: 111 -------PKCCQFDTVELSRVLL----------PTQESYKLSELSSSLDMDHDRPHRADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T L + K +L Sbjct: 154 DAEITAELFIKLLHKLERLPLVTLQ 178 >gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] Length = 1463 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 69/479 (14%), Positives = 129/479 (26%), Gaps = 55/479 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G R + V+V + I+ F E +T IT Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKV-MGGKVIDKFSAF---VNPKQSIPEEITKLTSITQ 491 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + E + F C + +N FD + R Sbjct: 492 DMVINEP----EIDVILPAFLEFCKGCFLVAHNASFDTSFIFENMKRLGL---------- 537 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N + + D + G ++KL +A GI + H A D T Sbjct: 538 NEDFTIADTVTISRVLL----------PGLKNYKLDTVAERLGITLEHHHRAVDDAGCTA 587 Query: 186 ALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM-TPLVHVSGMFGASRSNTALIAPV 243 + L K L N N+ I+ M T + + R N + + Sbjct: 588 EIYIKLCELAVTKYGNELLGNFNTNEGFCCDTIKKMGTDHIIILAKNDIGRINLYKLVSL 647 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 H Y S M + L + S E L ++ ++ + Sbjct: 648 -SHLEYFQRRPRIPKSLLMANREGL--------IIGSACEAGELYQAVLRRHGEDELAAI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 + + ++ K + + + Sbjct: 699 ADFYDYFEIQPLDNNGFMIESDRVPDITSEEDLREINRKIVELGEKFNKPVVATCDAHFL 758 Query: 364 FFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT-------LSE 414 D + + ++ L L ++ L E Y + L Sbjct: 759 NPEDEIYRKYLLWSKGMKDADRPLPLYLRTTEEMLEEFA--YLGKEKAEEVVITNTNLIA 816 Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 ++ R IE +L+ + + E GD+ + +++ L L +I Sbjct: 817 DMIENISPVRPDK-CAPIIENSDAELRRICYDKAHEIYGDDLPKKVVDRLEHELNSIIS 874 >gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233] gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM 44233] Length = 613 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G A + + V+V R + + P+ +TGI Sbjct: 48 TFVVVDLETTGGSPATEAITEIGAVKV-RGGQVLGEFATL---VDPGRTIPPQITMLTGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + F ++ +N RFD + R R Sbjct: 104 TNAMVYDAPR----ISSVLPAFLEFARGSVLVAHNARFDVGFLRAACARQQVPWP----- 154 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G + D + + R + A S +L LA G H A D A Sbjct: 155 -GPAVVDTVRLARKV-----------LPRAEAPSVRLSALAALLGARTRPDHRALTDARA 202 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + Sbjct: 203 TVDVLHALFERLGSLGVHSLA 223 >gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] Length = 236 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 66/225 (29%), Gaps = 33/225 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + G+ + + T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNKADRIIEIGGIELFNHF-PTGKTLHLYINP-GDRKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + A+ + I FF +N FD + F R Sbjct: 62 ESLKDKP-PFADVADEILAFFEGAK---WIAHNATFDMGFVNAEFNRLGRPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 + D L + R + P+ L L GI+ H H A D Sbjct: 113 DMVIDTLAMARRKHPMGPN--------------SLDALCRRYGIDNSHRTRHGALLDSEL 158 Query: 184 TLALV------WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + R N + +++ P Sbjct: 159 LAEVYIEMIGGRQTALGLGSSNGSSARSRQNNDVEEVVVEILARP 203 >gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328] gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328] Length = 1421 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/400 (12%), Positives = 108/400 (27%), Gaps = 44/400 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G A ++ + V++ + ++ + + +T IT Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFNQL---INPEIPIPEKITELTSIT 457 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++A + +F C + +N FD + + + Sbjct: 458 NEMVKDMPKIDA----VLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPV------ 507 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L RA + + KL L + N H A D AT Sbjct: 508 -RTYIDTLAFARA-------------LEPHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + + + N+ + ++ T ++ + G + A Sbjct: 554 GEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKNLIGLKNLYKLVTASN 613 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKCP 301 + + + L+ + + + I + L P Sbjct: 614 LKYFSREGGIPKSELNKRREGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQP 673 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L K + + L + L Y K + + + Sbjct: 674 PLYYDGVKSKSMSFNLRSCEELTRKLYDLSLKHNKLL--VADSYAKYFEKEDYIFRNIIL 731 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 +G + E+ TL +D + E F Sbjct: 732 EGQPRKIYG-----------EKFPTLFFRTTDEMMNEFGF 760 >gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] Length = 286 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 30/184 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G DR + A VR+ ++ PDP F+ IT Sbjct: 37 FVVVDVETTGLSSTSDRIVEIALVRI-EGGRVVDEWATL---VDPGRDPDP--TFVHHIT 90 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + I S + ++ +N RF++ + F R Sbjct: 91 AEMLSGAP-TFADVAGEI---LSRLDGAVVVAHNARFEEGFIAQEFARVGI--------- 137 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + +R A +F+L GIE +AH A D AT Sbjct: 138 STAPLPAVCTLRLARQVL-----------AAPNFQLVSCCTVYGIELHDAHTALGDTRAT 186 Query: 185 LALV 188 L+ Sbjct: 187 AQLL 190 >gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] Length = 1420 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 735 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 736 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNIIADKIE 786 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 787 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 840 >gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1407 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 63/481 (13%), Positives = 140/481 (29%), Gaps = 53/481 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + F ++D ET G D + V++ ++ + I++ E F + Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +E E +F N+ ++ +N + N + Sbjct: 446 TGIDESIVKDAPSIE-EILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +LD + D ++KL L+ ++ + H A D Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLSEHLQVKLEHHHRAVDD 541 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + ++ +L N +DI+ + P+ HV+ + + L Sbjct: 542 ARATAEIFIKTIDRLKELGVKKVKDINAILRESEVDIRKL-PVYHVTILVKDQKGLRNLY 600 Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298 ++ + Y S + + + L ++ + L ++ + Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + + E + ++ + D Sbjct: 661 DYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDNIY 720 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 + ++ L +D L E F Y + Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768 Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + +++ + IE + +L+ L + E GD E + N L L +I Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828 Query: 469 P 469 Sbjct: 829 N 829 >gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 1463 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 69/249 (27%), Gaps = 32/249 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D + VRV E E+ + + + V ITGI Sbjct: 447 SFVVFDIETTGLLKYRDAITEIGAVRV-ENGEITETYNQL---INPERILPEKIVEITGI 502 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + F +I N FD + R R Sbjct: 503 TDAMLADKPKID----EVLPGFLDFCGDSLIVGQNTDFDVGFIRENAKRLGL-------K 551 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + RA D F L +A I N H A D A Sbjct: 552 FDPIYLDTLPMARA-------------LFDDMGKFSLDKIARKLDIPAFNHHRASDDARA 598 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T + + + + N+ + + + F ++ + + Sbjct: 599 TAQIFIKMYKMIMEEEGLNLSKINRLK----TNYPKAKHETFSALAFAKDKTGLKNLYKL 654 Query: 244 AWHPRYKDS 252 R Sbjct: 655 ISESRMNYM 663 >gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] Length = 1424 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 137/474 (28%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ F+ + +N++FD + R D Sbjct: 463 DEMVQNAD-DENIVIRQFQDFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844 >gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] Length = 1424 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 137/474 (28%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLHGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNIIADKIE 790 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844 >gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1] Length = 1441 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 60/475 (12%), Positives = 145/475 (30%), Gaps = 53/475 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + V++ + + ++S K + + +TGI+ Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKL-KNLQVVDSFNT---KVNPEKPIPEKITELTGISD 481 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 EAE R +F + ++ +N R+D + R N Sbjct: 482 ADVKDAPH-EAEALRMFMEF--CGDKPVLIAHNARYDTNMINQVCKR----------QNI 528 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + +D + + P+ + KL +A + + H A D Sbjct: 529 DFDYTWVDTLVMCQSMLPEMGR----------HKLNLVAKQLKLGKFDHHRASDDALMLA 578 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAPVA 244 + + + + + ++ + + + A ++ L++ Sbjct: 579 KIYIELAGRLKNDRGFKSLNELNRLVDEIETKKLKSYHHIILVRNQAGLKNLYKLVSLSN 638 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 YK +I ++ R S A LF + +++ + + Sbjct: 639 LEYFYKKPLIPKSILEQHREGLIFGSACEAGELFQAILDIRDEE-YIEQIAKFYDYLEIQ 697 Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 PI + + + + ++ N ++ L A + + + ++ Sbjct: 698 PIGNNEFMVRDGKAENDEELMQYNREIVELGDKLGIPVCATCDVHFIDPKDGIYRKIILA 757 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL------SEKEK 417 E + L L ++ + E Y + + ++ Sbjct: 758 SMGFK-----------DAENQAPLYLRTTEEMMKEFA--YLGEEKAKEIVITNTNNIADQ 804 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468 + + K I+ + +L ++ E GD E + L L +I Sbjct: 805 IEVVRPIPKGTFTPTIDGAEEELVKITHEKAFSIYGDPLPEIVDKRLDRELSSII 859 >gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419] gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419] Length = 242 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + G+ ++ Q+ T + P D PEA+ + GIT Sbjct: 4 IIFDTETTGLDNREDRVIEIGGIELENQF-PTGRTIHIYINP-GDRKVHPEALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AE ++ I FF +N FD + F R Sbjct: 62 DFLKDKP-SFAEIAQEIVDFF---GDARWVAHNATFDMGFINAEFERLGLPPV-----GS 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 + D L + R + P+ L L GI+ H H A D Sbjct: 113 DRVIDTLSLARRKHPMGPN--------------SLDALCRRYGIDNSHRTRHGALLDSEL 158 Query: 184 TLALVWLI 191 + + Sbjct: 159 LAEVYIEM 166 >gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] Length = 1465 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 54/447 (12%), Positives = 109/447 (24%), Gaps = 34/447 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIIEQFDEF---INPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R Sbjct: 482 TDNHLVGA-KPIQQVLEAFQAF---CQGTILVAHNASFDVGFMNANYDRYGL------AK 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y L L + + H A D A Sbjct: 532 ISQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + + L + + Sbjct: 579 TGRLLFIFLKEAREKHGITNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + + L L + + + Sbjct: 639 LSNVKYFEGVPRIPRTVLDQHREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L + A N Y + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRDIIV 758 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQ 418 P L + ++ L + F A ++ Sbjct: 759 RSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGQDLAYEVVVQNTQALAD 818 Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQSL 443 E K L I++ + + L Sbjct: 819 RIEKVEVVKDDLYTPYIDKAEETVAEL 845 >gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386] gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 1421 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 28/225 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++I+D ET G D D+ + V++ + I+ F + E + +T IT Sbjct: 399 YIIFDIETTGFDPYKDKIIEIGAVKL-KGRNIIDRFSAF---VNPEVPIPEEIIKLTNIT 454 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +++ + +F C + +N +FD + + + Sbjct: 455 DDMVKDAELID----TVLPRFLEFCGDCTMVAHNAKFDVGFLTQKARQLELEFLP----- 505 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D + D F L+ LA I N H A D AT Sbjct: 506 -----SVIDTLYWARVLITDL----------KRFNLKALANYFNISLDNHHRAVDDAEAT 550 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 ++ + N + M ++ V Sbjct: 551 ASIFIKMLNMVLSKGILQIYEINDTFQNNVQTADTMNTMILVKNR 595 >gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 1358 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 68/220 (30%), Gaps = 30/220 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G DR + +V + E + L + ITGI Sbjct: 341 SFVVFDLETTGLSRYRDRITEIGACKV-IDGKICEIYNEL---VNPEMLIPEKITEITGI 396 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q +E + F I+ N FD + R R D Sbjct: 397 TNQMVESCPKIE----EVLPGFLEFCQGSILVGQNTDFDVGFVRENCTRLGLDFN----- 447 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + RA++A F L +A I N H A D A Sbjct: 448 --PLYLDTLPMARALFA-------------DMKKFSLDKIARKLEIPAFNHHRASDDARA 492 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 T + I+ K + E D + N+L+ Sbjct: 493 TAQIF--IKMFKMIMKEDGIDLSSINKLKSYWPKAKHEYF 530 >gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] Length = 1605 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 134/478 (28%), Gaps = 54/478 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +++D ET G A +R + V++ R E +E F +TG Sbjct: 589 DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVERFSTF---VNPMMPIPSNITELTG 644 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + F + + +N +FD + R+ R Sbjct: 645 ITDDMVADAPT--EDVA--VSDFMAFCGNSPVCAHNAKFDVSFIRSAAAR-------MEK 693 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + +A G ++KL +A + + H A AD Sbjct: 694 SFDNPVVDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 + I K + Y + + T + ++ LI+ Sbjct: 741 MLCMIYMHIVNDTRKTAKLEYIGDFNTAFGSVDIKKLPTYHQIILVKNKVGLKNLYRLIS 800 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 YK I +L R + S A LF + E K + Sbjct: 801 ASNLDYFYKKPRIPKSLLSQYREGLIIGSACEAGELFRAILE-KESQEKIEEIASFYDYL 859 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + PI + + N +++ L A + + V ++ Sbjct: 860 EIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRLGKPVVATCDVHFKDPEDAVFREV 919 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420 D L +D L E Y + Sbjct: 920 LQAGQGYEDFA-----------NQPPLYFRTTDEMLEEFA--YLGEEKAKEVVITNTNRI 966 Query: 421 LEHRK--KMLTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + + I+ +LQ L + + GD+ E + L + L +I Sbjct: 967 ADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDLPETVEKRLKKELDSII 1024 >gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] Length = 1439 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 31/331 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + +T IT Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + EAE +R +F + +N++FD + R+ Sbjct: 478 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 527 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L L + + H A D AT Sbjct: 528 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 574 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L++ + + FE L + + ++ + ++ ++ L++ Sbjct: 575 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPAHMTVLALTQKGLKNMYKLVSL 634 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + Y++ + R S +F ++ ++ Sbjct: 635 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKAKFYDFLE 692 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ 333 + P + + D + E L + + Sbjct: 693 VQPPAAYSQLIADELIKDENQLEEILKNIYK 723 >gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5] gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5] Length = 584 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E++ V P +TGI Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L +E + +F S ++ +N +D + + ++ Y Sbjct: 87 TQAMLLPAPPIE-QVLPSFLEFISD---AVLVAHNAPYDVGFLKAACAKHGYRWP----- 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + R + D + KL LA H A D A Sbjct: 138 -NPRVLDTAALARRV-----------LTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKA 185 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 186 TVDVLHGL 193 >gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1402 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 69/480 (14%), Positives = 136/480 (28%), Gaps = 58/480 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E I+ + F + + +T IT Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 438 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I +F + +N++FD + R Y Sbjct: 439 DEMVQAAD----DEAVVIKEFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 488 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L L + + H A D AT Sbjct: 489 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 535 Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ K E N + T + ++ N + + Sbjct: 536 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 595 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A +Y + S R+ L + ++ K+ + Sbjct: 596 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYKEAKKKAEFYDFLEI 654 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358 P + D + E LT + + + A Y + + +DV Sbjct: 655 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 714 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412 G + T L E F A+ P+ + Sbjct: 715 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 761 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + ++ + +I ++++L + E GD + + L L +I Sbjct: 762 NA-MIDEGVQPVQDESFPPKIPHTAERVRNLTYDKAHELYGDPLPDNIQARLDRELDAII 820 >gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] Length = 1438 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 28/222 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D D+ + +++ + E I+ VF + E +T IT Sbjct: 412 YVVFDIETTGLDPYKDKIIEIGAIKLKGK-EIIDEFSVF---INPEIDIPEEITALTNIT 467 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 VE + +F + +N +FD + + Sbjct: 468 NDMVKDAEKVE----TVLPKFLEFCKDTTVVAHNAKFDVGFINQKAKNLGLE-------Y 516 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D L R F L+ +A + N H A D AT Sbjct: 517 SPSVIDTLHWARI-------------LLPEQKRFGLKYIANYFNVVLDNHHRAVDDAKAT 563 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 + N+ + + + ++ V Sbjct: 564 AEIFQKFLNMVLSRGVLKLSEINQELQTNIQNADTLNTMILV 605 >gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus halodurans C-125] gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 942 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M N FV+ D ET G+ VA DR + V ++ + E+ E F + P Sbjct: 1 MNNRFVVIDIETTGQSVAQGDRIIEIGAVVIEDE----EAVESFCTLVNPERSIPPFIEE 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ + + I + S+ + +N+ FD + + + Y Sbjct: 57 LTGISDEMVKGAPTFH----QCIPELMSMLEGGVFVAHNVHFDLSFLQKLLEHEGY---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 G ++D + S+KL L G+EH N H A + Sbjct: 109 -----GPLLVPIIDTVELSRILL----------PTEESYKLSALTEQLGLEHENPHRADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T L+ L+ +K +L Sbjct: 154 DAKVTADLLLLLLQKLRQLPLMTLQ 178 >gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2 155] gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str. MC2 155] Length = 672 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 63/208 (30%), Gaps = 32/208 (15%) Query: 4 HFVIYDYETFGRDVAL-------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 FV+ D ET G D + V+V R E + P+ Sbjct: 75 TFVVVDLETTGGRAKATAPGGLCDAITEIGAVKV-RGGEVLGELATL---VDPGRAIPPQ 130 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 V +TGIT ++A + F ++ +N FD + R R Sbjct: 131 IVELTGITTAMVRDAPRIDA----VLPMFLEFARGAVLVAHNAGFDIGFLRAAAERT--- 183 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R +L ++ D A S +L +LA G H Sbjct: 184 ------QLTWPRPPVLCTVKLARRVL--------TRDEAPSVRLSELARLFGASTTPTHR 229 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A D AT+ ++ + E+ + Sbjct: 230 ALDDARATVDVLHGLIERVGNQGVHTLA 257 >gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1445 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E I+ + F + + +T IT Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I QF + +N++FD + R Y Sbjct: 482 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 531 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L L + + H A D AT Sbjct: 532 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 578 Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ K E N + T + ++ N + + Sbjct: 579 GYLMFKLLDAFNDKYHEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A +Y + S R+ L + ++ K+ + Sbjct: 639 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358 P + D + E LT + + + A Y + + +DV Sbjct: 698 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 757 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412 G + T L E F A+ P+ + Sbjct: 758 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 804 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + ++ + +I +++ L + E GD + + L L +I Sbjct: 805 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 863 >gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7] gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7] Length = 1440 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 68/491 (13%), Positives = 144/491 (29%), Gaps = 68/491 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G V D +F V++ + E I+ ++F +T I Sbjct: 402 TYVSFDLETTGLSVIHDGITEFGAVKI-KNGEVIDRLQMF---VNPGKSISSRITNLTSI 457 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++A RI +FF CI+ +N FD + RN Sbjct: 458 TNDMVRNEPTIDA-LLPRIIEFFDD---CILVAHNANFDIGFLNENLRRNNMPEI----- 508 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D L + RAI S++L ++ + + AH A D Sbjct: 509 -TNPIIDSLALARAI-------------LKPMKSYRLGNVCRSYRVNYDDEVAHRADYDA 554 Query: 182 YATLALVWLIREKKPKLFEYL---YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 + ++ + + +Y + + K++ +MT L A N Sbjct: 555 EVLGDVFNMMLHQIMQSGKYNLLDLCELTGDDVYKIVYPYHMTALAL----NKAGLKNMF 610 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + A + +Y + + L L + + Sbjct: 611 KLVSEA-NTKYFHNGSRIPKERLEHYREGLLYGSSCYNGDVFEAALNLSDEKLERAMEFY 669 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P++ D +++L ++ L A + + + Sbjct: 670 DYIEIQPLEDYYHLVDRGKLQDTDELIKSLHRIIDCAKKLDKLIVATGDVHFLEVRDKIF 729 Query: 358 SQLYDGFFADVDRQIMDRI--LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 ++ + R + L ++ L +P L + Sbjct: 730 RDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLRTTNEML---------EGYP-YLPQD 779 Query: 416 EKQDW--------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLI 457 E ++ ++ L +I+ L+ + + + G+ + + Sbjct: 780 EVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKKICYDTAHKTYGNPLPQIVE 839 Query: 458 NALYEYLQWVI 468 L + L +I Sbjct: 840 KRLEKELSNII 850 >gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1445 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 71/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E I+ + F + + +T IT Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I QF + +N++FD + R Y Sbjct: 482 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEI------ 531 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L L + + H A D AT Sbjct: 532 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 578 Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ K E N + T + ++ N + + Sbjct: 579 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A +Y + S R+ L + ++ K+ + Sbjct: 639 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358 P E D + E LT + + + A Y + + +DV Sbjct: 698 QPPSNYSSLIAEGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 757 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412 G + T L E F A+ P+ + Sbjct: 758 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 804 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + ++ + +I +++ L + E GD + + L L +I Sbjct: 805 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 863 >gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] Length = 1527 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 51/399 (12%), Positives = 104/399 (26%), Gaps = 45/399 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G D+ + V++ + ++ F + +T IT Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKI-QHGTIVDRFSTF---INPEVPIPYHIQKLTSITD 553 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + +E + +F S C + +N FD + + + N Sbjct: 554 EMVIGSRTIE----EILPEFLSFCEGCYLVAHNASFDIGFITK----------KAEFLNI 599 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + FKL +A A I N H A D T Sbjct: 600 PLTVTSVDTVGLARVLLNHLNN----------FKLDTVAKALSISLENHHRAVDDAGCTA 649 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAPVA 244 + E + N+ + I+ M + R N + Sbjct: 650 EIYLKFLEMLRERGIETLAQINRAEEVTPDVIKKMPTYHAIILCQNDIGRVNLYRMVS-Y 708 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHLNKC 300 H Y S M+ + L + L+ I + Sbjct: 709 SHINYFQRRPRIPKSVLMKHREGLLIGSACEAGELYQAILRNSSEGEIVRLANFYDYYEI 768 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L + + + + N ++ A + + + +V ++ Sbjct: 769 QPLGNNQFMIESEKIDISSEEELKEINRKIIALGEEYNKPVVATCDVHFLNPEDEVYRRI 828 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + + L ++ L E Sbjct: 829 IMAAKGF-----------SDADNQAPLYFRTTEEMLEEF 856 >gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] Length = 909 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FVI D ET G DR Q V +E FF + Sbjct: 1 MATRFVIIDLETTGNGPKKGDRIIQLGMAVV-EDGLIVERFASFF---NPEQPIPLFIQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I Q + A+ + I + +N+ FD + + R + + Sbjct: 57 LTNINEQMVEGAPL-FADKAGEIAALM---HGAYFVAHNVDFDLPFLQAELERAGWPPFA 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R + A S+KL DLA G+ H H A + Sbjct: 113 ------GPTIDTVELARIV-------------LPTAESYKLGDLARQLGLHHDRPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T L + ++ +L + Sbjct: 154 DAEVTAKLFIALLKRLSRLPLMTLE 178 >gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 342 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 30/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D ET G DV + A ++V + E A I Sbjct: 75 PESYVVVDLETTGLDVHYCEIIEIAALKV-VDGKITEEFSSL---IHPPREIPSGATAIN 130 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + + F +IG+N++R+D F+R + Sbjct: 131 HITNHMVKNAP-TLDKVIPQFDTFVK--GFPLIGHNSLRYDAIVLEENFFRRDFLCDYVW 187 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 + D + R I +KL ++A ++ H AH A AD Sbjct: 188 Y-------DTYKLARQI---------------LEPPYKLINIAKRLNVKQHGKAHRALAD 225 Query: 181 VYATLALVWLIRE 193 Y T + +RE Sbjct: 226 CYMTYGIYEKMRE 238 >gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] Length = 1445 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 68/491 (13%), Positives = 144/491 (29%), Gaps = 68/491 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G V D +F V++ + E I+ ++F +T I Sbjct: 407 TYVSFDLETTGLSVIHDGITEFGAVKI-KNGEVIDRLQMF---VNPGKSISSRITNLTSI 462 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++A RI +FF CI+ +N FD + RN Sbjct: 463 TNDMVRNEPTIDA-LLPRIIEFFDD---CILVAHNANFDIGFLNENLRRNNMPEI----- 513 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D L + RAI S++L ++ + + AH A D Sbjct: 514 -TNPIIDSLALARAI-------------LKPMKSYRLGNVCRSYRVNYDDEVAHRADYDA 559 Query: 182 YATLALVWLIREKKPKLFEYL---YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 + ++ + + +Y + + K++ +MT L A N Sbjct: 560 EVLGDVFNMMLHQIMQSGKYNLLDLCELTGDDVYKIVYPYHMTALAL----NKAGLKNMF 615 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + A + +Y + + L L + + Sbjct: 616 KLVSEA-NTKYFHNGSRIPKERLEHYREGLLYGSSCYNGDVFEAALNLSDEKLERAMEFY 674 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P++ D +++L ++ L A + + + Sbjct: 675 DYIEIQPLEDYYHLVDRGKLQDTDELIKSLHRIIDCAKKLDKLIVATGDVHFLEVRDKIF 734 Query: 358 SQLYDGFFADVDRQIMDRI--LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 ++ + R + L ++ L +P L + Sbjct: 735 RDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLRTTNEML---------EGYP-YLPQD 784 Query: 416 EKQDW--------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLI 457 E ++ ++ L +I+ L+ + + + G+ + + Sbjct: 785 EVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKKICYDTAHKTYGNPLPQIVE 844 Query: 458 NALYEYLQWVI 468 L + L +I Sbjct: 845 KRLEKELSNII 855 >gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola ATCC 35405] gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405] gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola F0402] Length = 217 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 27/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F +D ET G + +R + V+ D + I V + PEA + IT Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDIRG-VIARYNVL---IDPEKPMPPEAGKVNQIT 71 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE F ++ +N FD + R Sbjct: 72 DEMLAGQPK-FAEVLPDFLDFIRN---TVLVAHNASFDINFINCELERCG------KTKL 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N +D L R G S+ LQ+LA G++ VNAH A+ D Sbjct: 122 TNKVFDTLTFAR-------------ETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVC 168 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 + + + + + DY K+ Sbjct: 169 MEFFKIAVSHFFEKNKDMLDYYKKD 193 >gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 463 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI D ET G DR + A +R + + E E P +TGI+ Sbjct: 6 YVILDLETTGGTPLHDRIIEIALIRF-EEGMESERWETL---VNPGISIPPFITHLTGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + R++ F + ++ +N+RFD + +N + R Sbjct: 62 NGMVKDAP-SFGDIAHRLYGFL---DGAVLAAHNVRFDYGFLKNEYRRMG---------- 107 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +L R L + +G++ H A DV Sbjct: 108 ALLQHRVLCTARLSRKLY----------PQHKGHGLDAIMQRHGLKTEMRHRAMGDVELV 157 Query: 185 LALVWLIREK 194 A + + R + Sbjct: 158 AAYLEMARRE 167 >gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. m3-13] Length = 844 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FV+ D ET G D+ Q V + E +E F P Sbjct: 1 MKQRFVVLDLETTGNTPKKNDKIIQVGAVLI-EDGEIVERFASF---VNPQCTIPPFIEQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I R A+ + + + + + +N+ FD + ++ + + Sbjct: 57 LTNINQDMVGRAP-TFAQIAPMLCEMLKGSS---LVAHNVPFDLSFLQHELKTSGHP--- 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + +D +++ R S+KL DL++ + H N H A + Sbjct: 110 ---TFSGNTFDTVELARI-------------LLPTQKSYKLTDLSIFYELNHDNPHRADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D AT + + EK L Sbjct: 154 DAEATAIIFLKLLEKIKTLPSITIK 178 >gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. Y412MC61] gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC61] gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] Length = 909 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FVI D ET G DR Q V +E FF + Sbjct: 1 MATRFVIIDLETTGNGPKKGDRIIQLGMAVV-EDGLIVERFASFF---NPEQPIPLFIQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I Q + A+ + I + +N+ FD + + R + + Sbjct: 57 LTNINEQMVEGAPL-FADKAGEIAALM---HGAYFVAHNVDFDLPFLQAELERAGWPPFA 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R + A S+KL DLA G+ H H A + Sbjct: 113 ------GPTIDTVELARIV-------------LPTAESYKLGDLARQLGLRHDRPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T L + ++ +L + Sbjct: 154 DAEVTAKLFIALLKRLSRLPLMTLE 178 >gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] Length = 1476 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 27/222 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + V++ + + ++ F +TG Sbjct: 449 DTYVVFDLETTGLSPVNDSIIEIGAVKI-QNKKVVDRFSTF---VNPKIPIPYNIEQLTG 504 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +E + +F + ++ +N FD + R + Sbjct: 505 IDDSMVVDADTIEN----ILPEFLKFCDGAVMVAHNAEFDVTFIRE---------KTKTI 551 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++D + A P+ + F L +A A + ++ H A D Sbjct: 552 LGKAFECTVVDTVSLARALIPNLGK----------FTLDHVAKALNVSLLHHHRAVDDAE 601 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 + + + + D N+ + + I+ Sbjct: 602 CCADIFLALVARLEMRNIFNLDEINEIEEFNINAIKKAKTYH 643 >gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] Length = 1440 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 71/470 (15%), Positives = 139/470 (29%), Gaps = 43/470 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++++D ET G + + + +V + I+ + V +TGI Sbjct: 428 YIVFDLETTGFNPYHNEIIEIGAAKV-KDGRIIDRFGTL---VDPETEIPERIVELTGID 483 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E +++F I +N+ FD + N Sbjct: 484 NSMVAGKPKKE----EALNEFLDFVGEATIVAHNLSFDRNFINNKLQAIG------ESAL 533 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 NS D L++ RA SFKL LA N H A D T Sbjct: 534 DNSALDTLNLARA--------------LLDLKSFKLNRLAKEFDKSLDNHHRAVDDAEVT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ + + + N +L ID + + P V + Sbjct: 580 AEILLELLDILKEDGVTHLTEVN--ELSSEIDYKRLRPYHAVILVKNQQGLKNLYKLVSK 637 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCPIL 303 H V S ++ + L + + G I+E+ + Sbjct: 638 AHIETFHRVPRILKSDLLKRREGLIIGSACEAGQLYQAIVNGKDESTIREIAEFYDYLEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 P+ + ++ E N + + L A + + + ++ Sbjct: 698 QPLGNNQFLIENEQVDSKEKLKEINHQIYQLGQKLNKPVVATGDVHFLDPEDKIYREILM 757 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 D + + E++ F PE+ N P + E+ ++ ++ Sbjct: 758 EGQGFDDAEDQAPLYYRTTEEMLDEFDYFE----PEVAKEVVIDN-PKQIVEEVEE--VK 810 Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 L IE +++ + + GDE E ++N L + L +I Sbjct: 811 PVPDGLFTPEIEGAVEEVKQMTYNKARSIYGDELPELVVNRLEKELDAII 860 >gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2] gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2] gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] Length = 929 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 89/281 (31%), Gaps = 38/281 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP-- 218 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK 285 V G L + Q + T + K Sbjct: 219 ----AYQVVSGIALRKKEDPLFEETFYQTSTYPKTKKAKEK 255 >gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1421 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 59/398 (14%), Positives = 117/398 (29%), Gaps = 36/398 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN FV++D ET G +D + V++ ++ V +T Sbjct: 403 TNSFVVFDIETTGFSPQVDEITEIGAVKI-VDGVIVDRFSQL---VNPMIKIPDRVVELT 458 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + ++ + I F ++ +N FD + R D +++ Sbjct: 459 GISNDFVKDEPTID----KVIVDFNDFCKNSVLVAHNAGFDISFIRR-------DMLKYN 507 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D L + RAI F L L+ G+ VNAH A D Sbjct: 508 LSFNFTVLDTLSLARAI-------------IKDIKRFNLTALSKKLGVSLVNAHRAVNDA 554 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT + + + KL + NK + I + + + ++ L++ Sbjct: 555 EATAEVFIKMLDILKKLGIKTFCDINKLKKDIDSSILFESSISLLVKNNVGLKNLYKLVS 614 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + + + + +L R + S + LF + ++ + Sbjct: 615 ESHMNYVNRVAKVPRSLINKYREGILVGSGNSSSELFKAVFNMESEENI-RNIARYYDYI 673 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + P++ D+ L + Y +D ++ Sbjct: 674 EIQPLENNLNYIENNLVKDYDTLKFINKKLYDLGKELNIPVVATGDVYYLDEKDDITRRV 733 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 I + L +D L E Sbjct: 734 ILNGQTGRPPENAHIPQ-------KLFFRTTDEMLEEF 764 >gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N] gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N] Length = 695 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + D Q A VR+ EV P + + GI Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E RR H+F ++ +N FD + R Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 R + + L L G I H A D Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDT 648 Query: 182 YATLALV-WLIREKKPKLFEYL 202 AT L+ + + FE Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670 >gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] Length = 695 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + D Q A VR+ EV P + + GI Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E RR H+F ++ +N FD + R Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 R + + L L G I H A D Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDT 648 Query: 182 YATLALV-WLIREKKPKLFEYL 202 AT L+ + + FE Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670 >gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] Length = 1438 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 49/330 (14%), Positives = 96/330 (29%), Gaps = 31/330 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +D ET G V D +F V++ + ++I + + + +T I Sbjct: 396 TFISFDLETTGLSVMDDDITEFGAVKI-KNGQEIGRLQSL---IKPNKRISQKITNLTHI 451 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E+ +I +FF +I +N FD + I R+ Y+ Sbjct: 452 TNEDVKDAPTI-QEYIPKILEFF---GDDVIVAHNATFDVGFLNEILQRHGYE------K 501 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D L + F+L ++A + +AH A D Sbjct: 502 LKNPAIDSLALA-------------WKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDA 548 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + ++ + +Y N I + ++ ++ L++ Sbjct: 549 EVLAGVFNMMLHDMMQNQQYSLLDMNAMPCESAYKIVRPKHMCVLAKDKTGLKNMFKLVS 608 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 K S I R S +F K + Sbjct: 609 EANTTYYQKTSRIPRERLEFYREGLLFGSGCYNSEIFDLAMTRSIEELK--KAMAFYDYI 666 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL 331 ++P+D C + L + Sbjct: 667 EILPLDICDYFVERGRVDTKEDLQRILRRI 696 >gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] Length = 1446 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 54/402 (13%), Positives = 125/402 (31%), Gaps = 48/402 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G ++ + +++ + + I+ C + V +T IT Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKL-KDGKVIDQFS---CFVNPEKPIPARVVEVTNIT 478 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + + ++ +N FD + ++ ++ Sbjct: 479 DYMVQDAETIE----KVFPKMLEFIEGSVLVAHNAEFDIGFLKHNAKVLG-------YNF 527 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + + I+ S+KL +A GI+ AH A DV T Sbjct: 528 DFTYLDTLSLAKEIF-------------PDYKSYKLGRIAKNLGIKVDVAHRALDDVDTT 574 Query: 185 LALVWLIREKKPKLFEYLYD---YRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTAL 239 + + ++ EK + + + ++ K + + + + + + ++ L Sbjct: 575 VKVFNIMLEKLKEKGVQTLEDVDTYSSDEEAKKSEYKKLKTYHAIILAKDYVGLKNLYKL 634 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLN 298 ++ YK I ++ L S LF L G I+ + Sbjct: 635 VSYSHLDYFYKKPRILKSVYKKYSEGLILGSACSEGELF--QAILHGKSDDEIETIAKDY 692 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P+ + D + E N ++ L A + + ++ Sbjct: 693 DYLEIQPLGNNDYLVRKEEVPDKEYIKEINRKIVALGEQLNKPVVATGDVHFLDPEDEIY 752 Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ + ++ + L L +D L E Sbjct: 753 RRILEAGQGYD-----------DADKQAPLYLKTTDEMLEEF 783 >gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC 27029] gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC 27029] Length = 584 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E++ V P +TGI Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L +E + + F + ++ +N +D + + ++ Y Sbjct: 87 TQAMLLPAPPIE----QVLPSFLEFVSDAVLVAHNAPYDVGFLKAACAKHGYRWP----- 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + R + D + KL LA H A D A Sbjct: 138 -NPRVLDTAALARRV-----------LTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKA 185 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 186 TVDVLHGL 193 >gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1411 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E I+ + F + + +T IT Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 447 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I QF + +N++FD + R Y Sbjct: 448 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 497 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L L + + H A D AT Sbjct: 498 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 544 Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ K E N + T + ++ N + + Sbjct: 545 GYLMFKLLDAFNDKYHEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 604 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A +Y + S R+ L + ++ K+ + Sbjct: 605 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 663 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358 P + D + E LT + + + A Y + + +DV Sbjct: 664 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 723 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412 G + T L E F A+ P+ + Sbjct: 724 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 770 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + ++ + +I +++ L + E GD + + L L +I Sbjct: 771 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 829 >gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] Length = 318 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 103/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRILGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + K + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEKGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEDGVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614] gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614] Length = 601 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 26/202 (12%) Query: 4 HFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G + V+V R E + + +TG Sbjct: 29 TFCVVDLETTGGSAEGGAMITEIGAVKV-RGGEVLGEFQTL---VNPRTEIPAFIAVLTG 84 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ VEA + F ++ +N FD + R + Sbjct: 85 ISNSMVADAPPVEA----ALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPG--- 137 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++++D R D A + KL LA A G H A +D Sbjct: 138 ------FEVVDTARLARRV--------VSRDDAPNCKLSSLAKAFGSTTTPNHRALSDAR 183 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT+ ++ + E+ + + + Sbjct: 184 ATVDVLHGLMERLGGVGVHTLE 205 >gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] Length = 1421 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 51/400 (12%), Positives = 108/400 (27%), Gaps = 44/400 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G A ++ + V++ + ++ + + +T IT Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFNQL---INPEIPIPEKITELTSIT 457 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++A + +F C + +N FD + + + Sbjct: 458 NEMVKDMPKIDA----VLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPV------ 507 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L RA + + KL L + N H A D AT Sbjct: 508 -RTYIDTLAFARA-------------LEPHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + + + N+ + ++ T ++ + G + A Sbjct: 554 GEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKNLIGLKNLYQLVTASN 613 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKCP 301 + + + L+ + + + I + L P Sbjct: 614 LKYFSREGGIPKSELNKRREGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQP 673 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L K + + L + L Y K + + + Sbjct: 674 PLYYDGVKSKSMSFNLRSCEELTRKLYNLSLKHNKLL--VADSYAKYFEKEDYIFRNIIL 731 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 +G + E+ TL +D + E F Sbjct: 732 EGQPRKIYG-----------EKFPTLFFRTTDEMMNEFVF 760 >gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1445 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E I+ + F + + +T IT Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I QF + +N++FD + R Y Sbjct: 482 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 531 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L L + + H A D AT Sbjct: 532 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVPLEHHHRANQDAEAT 578 Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ K E N + T + ++ N + + Sbjct: 579 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A +Y + S R+ L + ++ K+ + Sbjct: 639 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 697 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358 P + D + E LT + + + A Y + + +DV Sbjct: 698 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 757 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412 G + T L E F A+ P+ + Sbjct: 758 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 804 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + ++ + +I +++ L + E GD + + L L +I Sbjct: 805 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 863 >gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 695 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 57/202 (28%), Gaps = 29/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + D Q A VR+ P P + + GI Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNPRRPIPPS--STEVHGI 552 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E R+ H+F ++ +N FD + Sbjct: 553 TDAMVADAP-DMTEVGRQFHKF---AEGAVLVAHNAPFDMEFL----------------- 591 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 R +LL R + L LA G I H A D Sbjct: 592 ---RRAELLIDRRFDNPILDTVLLSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDT 648 Query: 182 YATLALV-WLIREKKPKLFEYL 202 AT L+ + + FE Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670 >gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 228 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V +D ET G D D+ + A V +++ FCK + + V +T Sbjct: 5 KKIVFFDTETTGLDPEKDQIIELAAALVTENGIELK--IDAFCKLPEGEKIPEKIVELTH 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT G+ E R + ++ +NI+FD + +F R Sbjct: 63 ITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKL 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +S D + + + D S + Sbjct: 123 RALDSLTVYKDRAAYPHKLANAIEHYGLADKVQNSHR 159 >gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum 70/3] Length = 1605 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 69/479 (14%), Positives = 127/479 (26%), Gaps = 56/479 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +++D ET G A +R + V++ R E ++ F +TG Sbjct: 589 DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVDRFSTF---VNPMMPIPSNITELTG 644 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + F + + +N +FD + R+ R Sbjct: 645 ITDDMVADAPT--EDVA--VSDFMAFCGNSPVCAHNAKFDVSFIRSAATRMGK------- 693 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + +A G ++KL +A + + H A AD Sbjct: 694 SFDNPVVDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241 + I K + Y + + T + ++ LI+ Sbjct: 741 MLCMIYMHIVNDTRKTAKLEYIGDFNTAFGSVDIKKLPTYHQIILVKNKVGLKNLYRLIS 800 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 YK I +L R + S A LF + E K + Sbjct: 801 ASNLDYFYKKPRIPKSLLSQYREGLIIGSACEAGELFRAILE-KESQEKIEEIASFYDYL 859 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 + PI + + + + Sbjct: 860 EIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVELGDRLGKPVVATCDVHFKDPEDAVFREV 919 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 L G + P L +D L E Y + Sbjct: 920 LQAGQ-------GYEDFANQPP-----LYFRTTDEMLEEFA--YLGEEKAKEVVITNTNR 965 Query: 420 WLEHRK--KMLTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + + + I+ +LQ L + + GD E + L + L +I Sbjct: 966 IADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDNLPETVEKRLKKELDSII 1024 >gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] Length = 1431 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 56/398 (14%), Positives = 111/398 (27%), Gaps = 41/398 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV++D ET G + + VRV + ++ + E ITG Sbjct: 415 DTFVVFDIETTGLSHLKNNITEIGAVRV-ESGKIVDVFNGL---VNPEQEISQEITEITG 470 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ +E + +F + +N FD + + R + Sbjct: 471 ITNEMVADKPLI-SEIMPKFLEF---SKNAVFVAHNAEFDISFIKTNCKRLNLEFNPT-- 524 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D M A P + KL L G+ +N H A D Sbjct: 525 --------FIDTMGFARAILPHL----------KNHKLNTLCKELGVNLLNHHRASFDAE 566 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 A ++ + + K + + N + + + + A +++ Sbjct: 567 ACAGILLELIKIVEKEGKVFDENINNIETKWPVAKNISYNSIIYVKKMEALSGFYKMVSE 626 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + + + + R + S LF + E K ++ Sbjct: 627 GLMKYFRRVAGFPKSRLKEYREGLLIGSGNWDGELFRAFIEEKSEE-EILEIAKFYDFFE 685 Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + PI K F + E N + L A N Y + + + Sbjct: 686 IQPISNLKHLFFRGKVLSIDDLKEINKKIYELGKKLDKLVVATGNVKYLDKNDYIFRNVI 745 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + E+ + +D E Sbjct: 746 LYGQGRKNL-----------EKEGSFYFRTTDEMFDEF 772 >gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] Length = 257 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 27/197 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +D ET G D+A DR + + V+V E+I V + EA I Sbjct: 5 LKRPIIFFDLETTGIDIARDRIVEISMVKVMPDGEEI----VRTRRINPGMPIPAEATAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + + ++ + QF G+N+ RFD F R D Sbjct: 61 HGITDEDVKDCPL-FPQIAKSLAQFIE--GCDFGGFNSNRFDLPMLVEEFMRAGVDVDFR 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ ++ + + + G + +AH A+AD Sbjct: 118 KRKF----IDVQNIFHKMEQRTL----------------VAAYKFYCGKDLADAHSAEAD 157 Query: 181 VYATLALVWLIREKKPK 197 AT ++ ++ + Sbjct: 158 TLATYEVLKAQLDRYGE 174 >gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] Length = 318 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEDDVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQVLHDYKENEMNADEKLKEYLN 315 >gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] Length = 318 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus kaustophilus HTA426] gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 909 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FVI D ET G DR Q V +E FF + Sbjct: 1 MATRFVIIDLETTGNGPKKGDRIIQLGMAVV-EDGLIVERFASFF---NPEQPIPLFIQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I + + A+ + I + +N+ FD + + R + + Sbjct: 57 LTNINEEMVEGAPL-FADKAGEIAALM---HGAYFVAHNVDFDLPFLQAELERAGWPPF- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R + A S+KL DLA G+ H H A + Sbjct: 112 -----SGPTIDTVELARIV-------------LPTAESYKLGDLARQLGLHHNRPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T L + ++ +L + Sbjct: 154 DAEVTAKLFIALLKRLSRLPLMTLE 178 >gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] Length = 279 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ +D ET G D + + ++V R + E F L P + Sbjct: 35 MLKSYIAFDLETTGLDPMNNEIIEIGALKV-RDGKVSERFMEF---IKPQELISPAITGL 90 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ I F I+ +NI FD +++ R + Sbjct: 91 TGISNDMVASA----RPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 146 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + ++ S L L IE+ AH A D Sbjct: 147 G-------IDTLKIAKKVH-------------PELESKSLSALCEHYKIENKAAHRAYFD 186 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + + Sbjct: 187 ALATAKLYQTLSHYFEPDNPKTFK 210 >gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 1454 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 113/400 (28%), Gaps = 43/400 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FVI+D ET G + ++ + V++ R + I++ F + +TG Sbjct: 434 DEFVIFDLETTGLSSSSNKIIEIGAVKI-RNGKIIDTFSSF---VNPETDIPEHITELTG 489 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + QF + I+ +N FD + + + Sbjct: 490 ITTTDIADAPT----IAAVLPQFVEFCASAILVAHNADFDMGFILHNTRDLAIEFN---- 541 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + R + KL ++A + N H A D Sbjct: 542 ---KTYIDTVSMARI-------------LLPNLGNAKLSNIANKLKVSLKNHHRAVDDAS 585 Query: 183 ATLALV-WLIREKKPKLFEYL--YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + I + L + + + + ++ V + L Sbjct: 586 ATAEIFLKFIEMLAQREIRNLDQLNELSNTSAEAIKKLPTYXGIILVKNEI-GRINLNKL 644 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ + + +L R + S A +F++ + + + Sbjct: 645 VSASHLDYFARRPRMPKSLIAQHREGLIIGSACEAGEVFSALLRDSNNIESIVDFYDYLE 704 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 M ++ + N +++ R A + + ++ + Sbjct: 705 IQPTMNNEFMIRSDKHAATSRKDLEDYNKRIVQLGEKCGKRVVATCDVHFLDPEDEIYRR 764 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 + + + L +D L E Sbjct: 765 ILMDYKGFK-----------DADLQPPLYFRTTDEMLDEF 793 >gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] Length = 256 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +++ D ET G + DR + +RV R ++ E + Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRV-RNGRPVKRYSQL---INPQRPLPEEITRL 137 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+T V+ + +F N +IG+N FD + R Sbjct: 138 NGLTDADLRNQPTVD-QVLPDFIRFI--GNDTLIGHNINEFDAAFLLANTTRLGMRHI-- 192 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 GN D L + RA+Y +L D+ GI +H A D Sbjct: 193 ----GNKTIDTLPLDRALY-------------PEEPKHRLVDIIRRFGIAQTESHRAADD 235 Query: 181 VYATLALVWLIREKKPKL 198 T ++ Sbjct: 236 ALQTAQCYETMKAYMKAN 253 >gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] Length = 205 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 34/229 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+I D ET G + + A +RV ++ KP+ ++P +TGI Sbjct: 10 SFLIVDLETTGLNPVNSEIIEIAALRV-EGGIVVDKFHTL-VKPSIGFIPT-YITKLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E QF II +N +FD + ++ Y+ Sbjct: 67 TNALVVDKPTIE----EVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQ------ITGRS 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N ++ + S L +LA I + H A D Sbjct: 117 IQNPVLCTQNLAK-------------RLFPDLPSKSLVNLAYHFNIPYNKKHRALEDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232 T L I + N N++ L+ + N L S Sbjct: 164 TYELFKKIID--------YLYMFNINKVMDLVRLSNGKDLNQTSKRRRY 204 >gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1411 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E I+ + F + + +T IT Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 447 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I QF + +N++FD + R Y Sbjct: 448 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 497 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L L + + H A D AT Sbjct: 498 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVPLEHHHRANQDAEAT 544 Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ K E N + T + ++ N + + Sbjct: 545 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 604 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A +Y + S R+ L + ++ K+ + Sbjct: 605 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 663 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358 P + D + E LT + + + A Y + + +DV Sbjct: 664 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGRELNKPVVATSDAHYIDKHEAIYRDVLL 723 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412 G + T L E F A+ P+ + Sbjct: 724 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 770 Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + + ++ + +I +++ L + E GD + + L L +I Sbjct: 771 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 829 >gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima Length = 186 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 28/195 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D+ET G D +D + V++ + + ++ ++ ITGI Sbjct: 13 TFVVLDFETTGLDPQVDEIIEIGAVKI-QGGQIVDEYHTL---IKPSREISRKSSEITGI 68 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E F II +N FD + R + + + Sbjct: 69 TQEMLENK-RSIEEVLPEFLGFLEDS---IIVAHNANFDYRFLRLWIKKVMGLDWERPY- 123 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + S+ L + G+ H A D Sbjct: 124 -------------------IDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARV 164 Query: 184 TLALVWLIREKKPKL 198 T + E K Sbjct: 165 TAQVFLRFVEMMKKE 179 >gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 695 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + D Q A VR+ EV P + + GI Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E RR H+F ++ +N FD + R Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 R + + L L G I H A D Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDT 648 Query: 182 YATLALV-WLIREKKPKLFEYL 202 AT L+ + + FE Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670 >gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1346] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] Length = 245 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ +D ET G D + + ++V R + E F L P + Sbjct: 1 MLKSYIAFDLETTGLDPMNNEIIEIGALKV-RDGKVSERFMEF---IKPQELISPAITGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ I F I+ +NI FD +++ R + Sbjct: 57 TGISNDMVASA----RPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + ++ S L L IE+ AH A D Sbjct: 113 G-------IDTLKIAKKVH-------------PELESKSLSALCEHYKIENKAAHRAYFD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + + Sbjct: 153 ALATAKLYQTLSHYFEPDNPKTFK 176 >gi|167949795|ref|ZP_02536869.1| Exodeoxyribonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 142 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 337 LRDRFKAIYNKPYTSSSQDVDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRR 395 ++ + ++ D D LY G F ++ DR+ M +I T +QL+ L+ F D R Sbjct: 1 MQAKISRVHQMKQFEPQTDPDLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDAR 60 Query: 396 LPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKG 449 LPE+ FRYRARN+P TL+E E+Q W E+R+ L + ++EY +L L+ + Sbjct: 61 LPEMLFRYRARNWPETLNETERQRWDEYRQTRLFDADGGGAIQLDEYLAQLDLLAADEGL 120 Query: 450 DEGKEGLINALYEYLQWVI 468 + L+ L E+ + V Sbjct: 121 SAERRALLPKLLEWAERVA 139 >gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] Length = 1424 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 65/473 (13%), Positives = 136/473 (28%), Gaps = 43/473 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364 P + ++ D K E +T + + + + +D + Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739 Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDWLE 422 +R +L L+ + L F A + Sbjct: 740 AQKANRGKNY--------ELPDLHFYTTQEMLDAFSFLNPKIAEEIVIKNTNIIADKIEN 791 Query: 423 H--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 792 VEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844 >gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3] gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3] gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1341] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0027] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] Length = 1475 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 88/289 (30%), Gaps = 30/289 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + DR + V+V E E+ F + +T IT Sbjct: 449 FVVFDIETTGFNSQTDRIIEIGAVKV-IDGEITETFSEF---INPQIPIPFKITQLTTIT 504 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++A + +F ++ +N FD + R D + Sbjct: 505 DEMVMNADTIDA----VLPRFLEFCGDSVLVAHNAGFDTGFIHENAKRLDLDFHPT---- 556 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D + + + F L +L I+ H A D AT Sbjct: 557 ------IVDTLGLSRSLMTHLAK----------FTLDNLCKNLNIKLETHHRAVDDATAT 600 Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + + + + D N+ I + + + L++ Sbjct: 601 GKIFIKFVQMLEEKEIFDLDQVNEFVAGSEDFIKKGRTYHGIILVKNNTGRVNLNRLVSE 660 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291 + + +L R + S A L+++ + + + Sbjct: 661 SHVRYFNRRPRMPKSLINKYREGLIIGSACEAGELYSAIVDQRSEEEIA 709 >gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8] gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8] gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4000] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1302] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1] gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118] Length = 318 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + V+V R + ++ P ++ +P + GI Sbjct: 32 NYTMLDIETTGLSPYRDRITELGAVKV-RNGQIVDQYTNLIKFPKNNKVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +G+ + + +F + IIGYN NF + Sbjct: 90 TEEQIVNEGIPAEQAIKEFREFID--DDIIIGYNVNFDL----------NFLYDLSQKYK 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R A+ +L D GI V H AD Sbjct: 138 LPILNNDYVDVLRLARAYY----------PRERHNRLIDCMQRAGIAQVEEHHGLADSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + + KN Sbjct: 188 TIKVYNDFSAHFTDDLLEATRNKIKN 213 >gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1402 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 69/484 (14%), Positives = 134/484 (27%), Gaps = 66/484 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E I+ + F + + +T IT Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 438 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I QF + +N++FD + R Y Sbjct: 439 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEI------ 488 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L L + + H A D AT Sbjct: 489 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 535 Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L+ K E N + T + ++ N + + Sbjct: 536 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 595 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD----ELKGLVPVPIKEVHLNK 299 A L + L + L + + ++ K+ Sbjct: 596 AGIKYNFK-----GLRTPKSELRRLHAGLLYGSSCSQGEVFIAMMQKGYEEAKKKAEFYD 650 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQ 354 + P + D + E LT + + + A Y + + + Sbjct: 651 FLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYR 710 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----F 408 DV G + T L E F A+ Sbjct: 711 DVLLAAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISN 757 Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464 P+ ++ + ++ + +I +++ L + E GD + + L L Sbjct: 758 PNKINA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDREL 816 Query: 465 QWVI 468 +I Sbjct: 817 DAII 820 >gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] Length = 604 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E++ V P +TGI Sbjct: 51 TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 106 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F + ++ +N +D + + R+ Y Sbjct: 107 TQAMLVPAPPIE-QVLPSFLEFVAD---AVLVAHNAPYDVGFLKAACARHGYRWP----- 157 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + R + D + KL LA H A D A Sbjct: 158 -NPRVLDTAALARRV-----------LGRDEVPNRKLGTLASYFRTATRPTHRALDDAKA 205 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 206 TVDVLHGL 213 >gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11] gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11] gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0031] gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0312] gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1342] gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis OG1RF] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0645] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1465 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 48/401 (11%), Positives = 97/401 (24%), Gaps = 30/401 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + IE + F + +TGI Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIIEQFDEF---INPGHPLSAFTTELTGI 481 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F I+ +N FD + + R Sbjct: 482 TDNHLVGA-KPIQQVLEAFQAF---CQGTILVAHNASFDVGFMNANYDRYGL------AK 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R +Y L L + + H A D A Sbjct: 532 ISQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + + L + + Sbjct: 579 TGRLLFIFLKEAREKHGITNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLVS 638 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + +Y + V + + + L L + + + Sbjct: 639 LSNVKYFEGVPRIPRTVLDQHREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDFIEI 698 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 MP + D + + L + A N Y + + Sbjct: 699 MPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRDIIV 758 Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401 P L + ++ L + F Sbjct: 759 RSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAF 799 >gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol] Length = 929 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 315 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEAGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312 >gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM 11293] gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM 11293] Length = 210 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D+ET G D DR + V + + E+ P + + GIT Sbjct: 25 FVSFDFETTGLDSFRDRILEIGAVSWRQ-GKTKETFSSL---VRPGIPVPPASTAVHGIT 80 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L + + F + +N+ FD + + R Sbjct: 81 DDDLLDAP----DEKGALVSFLRFIEGKVAVAHNLPFDYGFLESSVDRLGL------SLG 130 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R +Y G S+ L +L + +AH A +D Sbjct: 131 DTLFIDTLTLSRRVY-------------PGLPSYALGNLITFLNLFQEDAHRALSDASDC 177 Query: 185 LALVWLIREKKPKLFEYLY 203 L + ++ ++ + Sbjct: 178 GRLFFRCLDEDKQMLKMTI 196 >gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family [Sanguibacter keddieii DSM 10542] gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family [Sanguibacter keddieii DSM 10542] Length = 616 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R E I + + +TGI Sbjct: 61 TFVVVDLETTGGSSKDAGITEIGAVKV-RGGEVIGEFQSL---VNPGHPVPAFIARLTGI 116 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + F ++ +N FD + + Sbjct: 117 TTLMVSSAPSIEL----VLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWP----- 167 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 GN D + + R + D A + KL LA H A +D A Sbjct: 168 -GNQVLDTVPLARRV-----------VTRDEAPNHKLGTLAALFRATITPDHRALSDARA 215 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 216 TVDVMHALFDRMAPLGITHLE 236 >gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0017] Length = 929 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6] gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2137] Length = 929 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis 62] Length = 929 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae] Length = 249 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 70/245 (28%), Gaps = 33/245 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV +D E+ G D DR + A ++ I+S E + L E I Sbjct: 6 KEIFVCFDCESTGLDPEKDRIIEIAAIKFSFN-AIIDSIEDL---INPETLIPQETTRIH 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + + + I + I+ + I FD R S Sbjct: 62 HITDEMVQKSPKIN----EVIQSYLDFIGESIVVGHGIPFDLALLEAEAKRAGVP----S 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + L+ L I+ +NAH A +DV Sbjct: 114 RLLNQRYLDTLRLAR--------------LYGESPTNSLESLRKHFNIQGINAHRAMSDV 159 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + + + + + E LR + PL G L Sbjct: 160 LVNIDVFKYLSQGFNTVEELFKKLEKPIALRAM-------PLGKHKGRSFREIPTEYLKW 212 Query: 242 PVAWH 246 + Sbjct: 213 ACHQN 217 >gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] Length = 1449 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 27/204 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + ++ + V++ + I+ IT IT Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKI-KAGRIIDRYSQL---INPGISIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ ++ E + +F ++ +N FD + + + N Sbjct: 478 NEQVANQPKID-EVIGKFVEFI---GDAVLVAHNAPFDMGFIKR---------DIKEYLN 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + ++D ++ PD + + L DL A G+ H A D AT Sbjct: 525 IDLECSVIDTLQMARDLFPDFKK----------YGLGDLNKALGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208 + + EK + NK Sbjct: 575 ANMFIIFLEKYKEKGIEYLKDINK 598 >gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] Length = 929 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309B] gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309A] Length = 929 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] Length = 318 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKVMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 463 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 28/197 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + I D ET G + DR + A V D + +ES E + L + Sbjct: 1 MKKKYAIIDVETTGGKASRDRIIEIAVVIHDGN-QILESWESL---INPETLIPWNITIL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI Q E +R+I + I +N RFD + F R Sbjct: 57 TGINDQMVANAPK-FYEVARKIVELTE---GAIFVAHNARFDYSFIGEEFKRLG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + L + R + L L+ I + H A D Sbjct: 107 -YTYTRKQLCTLRLARQTLPGLYA-------------YGLDALSRHFNIHNQARHRAMGD 152 Query: 181 VYATLALVWLIREKKPK 197 V AT+ ++ I + + Sbjct: 153 VQATIKVLEYILQHEDN 169 >gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] Length = 920 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 71/212 (33%), Gaps = 28/212 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 T +V+ D ET G A DR Q A V E ++ F + Sbjct: 3 TQKYVVVDIETTGHSPAKGDRIIQLAMV-TIENGEITDTYTEF---INPGRTIPLFIQDL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT E +++ +++ I +N FD + + R+ Sbjct: 59 TNITDADVAEAKAFEH-YAQTVYEKMQD---AIFVAHNTNFDLPFLQAELKRSGLP---- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D ++++R +Y + SFKLQD+ GI +AH A D Sbjct: 111 --KWQGLTMDTVELVRLMYPTAF-------------SFKLQDITSELGIPLESAHRADDD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 AT L +E L + +K + Sbjct: 156 AMATALLFLRAKEDLASLPYATLAFLHKRSFQ 187 >gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. 18P13] Length = 1444 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 62/480 (12%), Positives = 129/480 (26%), Gaps = 57/480 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +I+D ET G DR + ++V + +S + + PE +TG Sbjct: 426 DTIIIFDVETTGLSAERDRLTEIGAIKV-KNMRVADSFHTY---VNPERPIPPEITDLTG 481 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I S+ + +FF+ ++ +N RFD + R Sbjct: 482 IHEGMVAEAPK----ASQALKEFFAFCGEDPVLVAHNARFDTSFIDAAAGRAGQ------ 531 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R YA+ + + KL +A + + H A D Sbjct: 532 --------------RYAYAYIDSLVLCQAMLPDLAKHKLNVVAKHLKLGKFDHHRADNDA 577 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240 + + + + Y +++K+ + + + ++ LI Sbjct: 578 MMLAKIYLELVGRLITEKKLEYLSELNTKVQKIDARKLKSFHQIILAKNQTGLKNLYRLI 637 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + YK ++ + S A LF + + + + ++ Sbjct: 638 SYGHIDCFYKKPLMPKSQLLKYHEGLLFGSACEAGELFRAMVDGRPYAEL-LELAKFYDY 696 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL--RDRFKAIYNKPYTSSSQDVDS 358 + P+ ++ + + Sbjct: 697 LEIQPLGNNAFMLRNGTAESEDDLKNWNRMICKIGDDLGLPVVATCDVHFMDPKDGKYRQ 756 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418 L G +Q + L L +D L E Y + + + + Sbjct: 757 ILMAGNGFK------------DADQQAPLYLRTTDEMLEEFS--YLGQEKAYEVVVENTN 802 Query: 419 DWLEHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468 + K IE + L + + E GD E + L L +I Sbjct: 803 RIADLIDFVRPIPKGTFTPNIEGAEEDLTRITNNRAREIYGDPLPEIVAKRLDRELSSII 862 >gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] Length = 233 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ +D ET G + + + ++V R + E F P + + Sbjct: 1 MLKSYIAFDLETTGLNPEQNEIIEIGALKV-RDGKVQERFMEF---VRPTENISPVVMNL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + I F I+ +N+ FD + + D Sbjct: 57 TGITNEMVADARSSRN----VIPDFLDFCGDDILIGHNVIFDYSFVKIGAMAEGLDF--- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D L + R ++ S L L IE+ AH A D Sbjct: 110 ----ERAGIDTLKIARKVH-------------KDMESKSLGCLCDYYHIENNAAHRAYHD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + ++ Sbjct: 153 ALATAKLYQTLAHYFEAQEPKIFQ 176 >gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM 21211] gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM 21211] Length = 174 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 53/192 (27%), Gaps = 27/192 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D + +R+ R E +E + F + + GI Sbjct: 3 YVVFDLETTGLSPERDAIVEIGAIRI-RNGEVLED-DTFHTLVNPERDIPWYVSRVHGIR 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F T + +N FD + R R + Sbjct: 61 NAHVASAPR----ITEALPAFLQYAGTTPVVAHNAAFDTGFIRAAAARQGLEW------R 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 L + R + S KL LA G+ H A AD Sbjct: 111 PQREICTLQLSRRAF-------------PREKSHKLDALAQRLGLLQEARGLHSAHADAR 157 Query: 183 ATLALVWLIREK 194 T + Sbjct: 158 LTAHAFAHLLRH 169 >gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0012] Length = 929 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0630] Length = 929 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYDFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218 >gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2141] Length = 929 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus sp. 7L76] gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] Length = 929 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 197 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 20/192 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + VI+D ET G + Q A VR+ + T + P +TGI Sbjct: 2 NLVIFDLETTGFSPRWNDIIQIAAVRL-VDGRISDETFSTYVSPRRPV--PDHITELTGI 58 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T ++ R +F ++ +N RFD + + Sbjct: 59 TDADVADAPET-SDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLP------ 111 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +R I + WP+ ++ L + GI HDA+ADV+ Sbjct: 112 ---------MRPIRFIDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVH 162 Query: 183 ATLALVWLIREK 194 V + + Sbjct: 163 LLANAVRRMIQN 174 >gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 315 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 100/345 (28%), Gaps = 44/345 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYLD 217 Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y + + D ++ L +K N + Sbjct: 218 IKAFYPVMRVKVKGRKKYVLTEILEDDVKEICTSLK---------CEPALKSEVGNTRIM 268 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 L ++ K + L+ L ++ D Y Sbjct: 269 LNSLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312 >gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] Length = 234 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V +D ET G D + + ++V R + +E F + Sbjct: 1 MLKSYVAFDVETTGLDPEQNEIIEIGALKV-RNGKVVERFMKF---IRPTEEISQTITDL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + E + I +F I+ +N+ FD + + D Sbjct: 57 TGITNEMVVNAQSRE----QVIPEFLDFCREDILIGHNVAFDYSFMKMGALAVGLDFVSQ 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R ++ S L+ L IE+ AH A D Sbjct: 113 G-------IDTLKIARKVH-------------GDLESKSLERLCAYYQIENKAAHRAYHD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + + ++ Sbjct: 153 ALATAKLYQTLAHYFEEKEPAVFQ 176 >gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0043] Length = 929 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] Length = 1421 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 51/400 (12%), Positives = 108/400 (27%), Gaps = 44/400 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G A ++ + V++ + ++ + + +T IT Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFNQL---INPEIPIPEKITELTSIT 457 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++A + +F C + +N FD + + + Sbjct: 458 NEMVKDMPKIDA----VLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPV------ 507 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L RA + + KL L + N H A D AT Sbjct: 508 -RTYIDTLAFARA-------------LESHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + + + N+ + ++ T ++ + G + A Sbjct: 554 GEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKNLIGLKNLYKLVTASN 613 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKCP 301 + + + L+ + + + I + L P Sbjct: 614 LKYFSREGGIPKSELNKRREGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQP 673 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L K + + L + L Y K + + + Sbjct: 674 PLYYDGVKSKSMSFNLRSCEELTRKLYNLSLKHNKLL--VADSYAKYFEKEDYIFRNIIL 731 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 +G + E+ TL +D + E F Sbjct: 732 EGQPRKIYG-----------EKFPTLFFRTTDEMMNEFVF 760 >gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] Length = 315 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312 >gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] Length = 1513 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 49/387 (12%), Positives = 110/387 (28%), Gaps = 40/387 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G +DR + V+V E ++ F + +T Sbjct: 471 DTYVVFDLETTGFSAEVDRIIEIGAVKV-CNGEIVDRFSTF---VNPEIPIPFRIETLTH 526 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q + +E + +F ++ +N FD + N + + Sbjct: 527 INDQMVMNAPKIE----EILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTT-- 580 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++D + P+ +KL L + + H A Sbjct: 581 --------IIDTVLLAQFLMPNLHN----------YKLDTLTKHLNVVLESHHRAV---D 619 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF-----GASRSNT 237 A + + L++ +K +D + L + + Sbjct: 620 DAAATADIFVKMIKMLYDRDIPDVDKLNEEGKMDENAIKKLHQYHCIILASNEMGRINLY 679 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEV 295 L++ + I +L R + S A LF S + + + + Sbjct: 680 RLVSASHLQYFNRFPKIPKSLVNQYREGLIIGSACEAGELFRSLVNGRSEAEIARIVNFY 739 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + + + ++ + N ++ A + + + + Sbjct: 740 DYLEIQPIGNNRFMIEKEDCYVQNEEDLRNLNRRIVELGDKFGKPVVATCDVHFLNPEDE 799 Query: 356 VDSQLYD--GFFADVDRQIMDRILRTA 380 V ++ F D D Q + T Sbjct: 800 VYRRIIMAGKGFDDADNQAPLYLHTTE 826 >gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] Length = 180 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 56/193 (29%), Gaps = 33/193 (17%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPAD---DYLPDPE-A 57 + V++D ET G D + +RV + E E +P + + +P P A Sbjct: 2 NVVVFDLETTGLSPERDAIVEIGALRV-VDGRVVESERFETL-VRPQNAAGEVVPIPWRA 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + GI+ E + + +F + +NI FD + R R Sbjct: 60 QRVHGISDAMVQDAP----ELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGL-- 113 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAH 175 + A A + L LA G+ H Sbjct: 114 -----------------VWAPPAEYCTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRH 156 Query: 176 DAKADVYATLALV 188 + DV T Sbjct: 157 RSLGDVQVTAEAF 169 >gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] Length = 470 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 30/191 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 F ++D ET G D Q VRV + + P + + G Sbjct: 277 SFTVFDTETTGLMPNKDEIVQIGAVRV-VNGKIVPGEVIDQLV--DPGRPIPPASTKVHG 333 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + QF + +I +N FD + + + Sbjct: 334 ITDEMVKGAP----DAVTSVQQFHTFAKDSVIVAHNAPFDMAFLHRYGRESGLEW----- 384 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180 ++D + L L G I H A D Sbjct: 385 -----DHPIMDTVLLSAVVYGTTEI----------HTLDALCDRLGVTIPVELRHTALGD 429 Query: 181 VYATLALVWLI 191 AT ++ + Sbjct: 430 AQATAEVLCHL 440 >gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC 13950] Length = 323 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 28/207 (13%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V R + P+ Sbjct: 16 TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKV-RGGVVLGEFATL---IDPQRSIPPQV 71 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A +F + ++ +N FD + R R Sbjct: 72 VRLTGITTAMVSDAPTIDA-VLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCDI-- 128 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R +L +R + A S +L LA + H A Sbjct: 129 -------AWPRPQVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 173 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 174 LDDARATVDVLHALIERVGNQGVHTYA 200 >gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter sphaeroides KD131] Length = 695 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + D Q A VR+ EV P + + GI Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRSIPPSSTEVHGI 552 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E RR H+F ++ +N FD + R Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 R + + L L G I H A D Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDT 648 Query: 182 YATLALV-WLIREKKPKLFEYL 202 AT L+ + + FE Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670 >gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16] gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16] Length = 220 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + FV++D ET G D + +RV+R ++ +V + + Sbjct: 48 LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVL---VKPSRKVPKKITEL 104 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP+ +GV + +F N ++ +N +D Sbjct: 105 TGITPEMIEAEGVSLESAVQDFAKF--AGNLRLVSFNAE---------------FDMAFI 147 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S G S + + A WP S++L ++A ++ + H A D Sbjct: 148 SKAAGKSSITFANPV--SCALKMSRRAWP----DRKSYRLAEIAKDGNLDTSDMHRALGD 201 Query: 181 VY 182 Sbjct: 202 CQ 203 >gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae] gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae] Length = 1459 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 72/479 (15%), Positives = 140/479 (29%), Gaps = 48/479 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G +F V +++ + FF KP +TGI Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKV-GKVTQFFIKPQ--AKIGAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q +G+ + +RI+ + + +N +FD + + F N + Sbjct: 481 TQQMLDSEGLSIKDGLQRIYDCL---DGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVT-- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 D L R + KL+D+A G+ + AH D Sbjct: 536 ----VIDTLIASRIGF-------------PNYKRHKLEDVASRLGVVYDPNVAHRGDYDA 578 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + I + + ++ L + + ++ + LI Sbjct: 579 KVLANVWVNIISELNSKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELIT 638 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-----PVPIKEVH 296 + F +LD + T L IKE+ Sbjct: 639 DCLTKKFINGPITF------KEDFVNLDRSDILVGSGTLKGLLIDKYFYSSHDDFIKELK 692 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL--RQQTNLRDRFKAIYNKPYTSSSQ 354 + P C + + I K+ + L+ + + + + K + Sbjct: 693 HYDFIEI-PAPQCFEHWIKYGFITTKQLYDGLSEIISEAKKHSKICIATADVKYLDPWDK 751 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFF---RYRARN-- 407 ++ L R + + +L N F +D L + F + A Sbjct: 752 EIFMSLVYAKGIKNARHYLFDYKKAEEGKLVIPNQRFLTTDEMLEQFAFLNDKKLAEEIV 811 Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 +T + +E K L ++ K KL L + + E L + + + Sbjct: 812 IDNTQKIANMAENIEVIKNGLFTPEFDDSKKKLHDLVYKNAHAKYGENLPELIQKRIDS 870 >gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] Length = 318 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ + L+ L ++ D Y Sbjct: 274 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 486 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 28/194 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F D ET G + A DR + +R R E + + + P TGI Sbjct: 12 TFAFLDIETTGGNSARDRITEIG-IRFWRAGEVVGEWQTL---LNPETRISPFIENFTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E E + + + +N RFD + ++ F R Sbjct: 68 SNEMVADAPLFE-EVADELEAQLK---GKVFVAHNARFDYGFIKSEFRRLGR-------- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +L ++ + L +G+ V H A DV A Sbjct: 116 --LFSAKVLCTVKLSRRLY----------PEFRRHNMDALIARHGLARVQRHRAMGDVSA 163 Query: 184 TLALVWLIREKKPK 197 LA R +K Sbjct: 164 MLAFFEHARSEKGD 177 >gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] Length = 233 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 65/189 (34%), Gaps = 27/189 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G D +DR + V ++ Q+ + F P D P+A+ + GIT Sbjct: 4 IVFDTETTGLDNKVDRIIEIGCVELENQF-PTGRSLHLFINP-DGRAVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q V A+ + I FF + +N FD + F R + Sbjct: 62 QFLADKPV-FADLADEIAAFF---DGAHYVAHNANFDMGFLNAEFDRIGLPPV-----DP 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 113 GLVIDTLALARRRHPMGPN--------------SLDALCRRYGIDNAHRTKHGALLDAEL 158 Query: 184 TLALVWLIR 192 + +R Sbjct: 159 LTDVYIEMR 167 >gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] Length = 547 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 58/202 (28%), Gaps = 23/202 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + VRV R + + + +TGI Sbjct: 30 TFVVVDLETTGAGPGSHTITEIGAVRV-RGGQVEDELSTL---VNPGRAIPAQITVLTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T E R Q+ + ++ +N RFD + R D + Sbjct: 86 TNAMVAGAP-PVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE--- 141 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R + + +L LA G H A D Sbjct: 142 ---PRVLDTLALARRAWT-----------RSEVPNHRLATLASFVGSPTRPTHRALDDAR 187 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT+ ++ E L + Sbjct: 188 ATVDVLHAALEVLGPLGVTHLE 209 >gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 462 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D ET G DR + +R +++ + + P I Sbjct: 1 MLPAYVLLDLETTGATPVTDRITEIGLIRY-ENGIEVKRWQTL---VNPEMHISPFITSI 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + F ++ S + ++ +N+RFD + +N F R Sbjct: 57 TGISNAMVKDAPL----FKDVANELLSHLHGAVLCAHNVRFDYGFLKNEFRRLDI----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R ++L ++ P+ S L + +GI H A D Sbjct: 108 -----TLRQNVLCTVKLSRRLYPEY----------KSHGLDAIIARHGIACAARHRAMGD 152 Query: 181 VYATLALVWLIREKK 195 V + + + Sbjct: 153 VEVMAEFLHIAEAEH 167 >gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] Length = 1451 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 37/239 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+YD ET G + D +F V ++R +I+ T+ F KP + T IT Sbjct: 399 YVVYDLETTGLSCSFDHIIEFGAVVIERG--EIKETKQLFVKPP--VPINAFISEKTNIT 454 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE ++ + F ++ +N FD + R Sbjct: 455 NEDVAQA-KPFAEVAQELVDFI---GDKVLVAHNATFDYNFLNEELKRIGMAPL------ 504 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 N D LD+ RA++ S++L ++A + AH A D Sbjct: 505 TNPVVDTLDLARALH-------------SDRRSYRLGNIARHYRITYDEEVAHRADYDAD 551 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ++ L+ ++ R + L ++Q+ V V + Sbjct: 552 VLASVFMLMIKEC--------KDRGAQTVADLQNLQDKKAFVKVMKRHVNVIAKNQAGL 602 >gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 231 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 68/225 (30%), Gaps = 28/225 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + YD ET G D + A D + F PEA I IT Sbjct: 4 LYYDTETTGIKADRDYVIELA--VYDPVGNR-----TFERLINPGVPIPPEATAIHHITD 56 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E +F S + +I +NN +FD ++ RN F R+ + W + Sbjct: 57 EMVANAP-SFGEIIEEFKEFCS-GDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKF--- 111 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L R + LQ L GI NAH A DV Sbjct: 112 ---LDTLKWARRYR-------------NDLPRHTLQFLRGIYGIAENNAHRALDDVIVLH 155 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 + + + Y + K+ PL V + Sbjct: 156 QVFSAMLDDLSIAEAYALMNQPKDIQHMPFGKHQGMPLKQVPASY 200 >gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 324 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 102/343 (29%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 19 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 74 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 75 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 125 TNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNALDDCITC 170 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 171 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLARNKRNVEWLRCMNVGSYL- 225 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS + N +L Sbjct: 226 -DIKAFYPVMRLKVKGRKKYVLTEILEDDVKEICTSLT-----CEPALNSEAGNTRIMLN 279 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 280 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 321 >gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 769 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G R + V+V + ++S + +TGI+ Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKV-IDSKVVDSWSSL---INPERRVPHFITRLTGIS 659 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + F CI +N+ FD + + + R Sbjct: 660 NDMVEDAPL-FCEVIDDLEAFMQD---CIFVAHNVNFDYGFFKLEYGRLER--------- 706 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R + + G+ S+ L L+ G+ N H A D A Sbjct: 707 -AFSMPKLCTVREMRKYY----------PGSPSYSLGKLSKEYGLSLDNHHRALCDAQAA 755 Query: 185 LALVWLIREKKPK 197 L+ ++ EKK Sbjct: 756 AELLIMVNEKKHT 768 >gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. natto BEST195] Length = 931 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 30/279 (10%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D+ Q A V + + E + + + Sbjct: 3 KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ Q + + + Q + +NI FD + + ++ + Sbjct: 59 TGISNQMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELHKAGF----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R ++ +KL +L+ + H H A +D Sbjct: 110 -QLPDCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + I EK +L + + D+ ++ + T Sbjct: 156 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFS 215 Query: 241 APVAWHPRYKDSVI--GCNLSGDMRVFQDLDSVQLAKRL 277 + P D I N S ++ ++ + L++ + Sbjct: 216 SFSVREPEAIDVRINEDENFSFEIESWEAGNEKALSELM 254 >gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1454 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ E + F ++ +N FD + + + Y+ S Sbjct: 483 DEQVANEPKID-EVIGKFVDFI---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 535 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 536 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + +K + N Sbjct: 580 ANMFIIFLDKYKEKGLEYMKDIN 602 >gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1454 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ E + F ++ +N FD + + + Y+ S Sbjct: 483 DEQVANEPKID-EVIGKFVDFI---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 535 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 536 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + +K + N Sbjct: 580 ANMFIIFLDKYKEKGLEYMKDIN 602 >gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] Length = 754 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 63/194 (32%), Gaps = 30/194 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D+ET G DR + V + + + IT Sbjct: 542 ERFVVIDFETTGLSPNNGDRVIEVGAVEI-VDGRIGRRFQSLA---NPGFPVSARITAIT 597 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + AE R + F + +N FD + + R Sbjct: 598 GISNAMLVDAP-PLAEVIREVSAFIE---GATLVAHNAGFDRRFLQAEMERLGL------ 647 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 WD +++ + G S+KL LA G+ +A H A AD Sbjct: 648 -------WDDREMLCTMRLGK-------RAYPGLGSYKLAFLAEHAGVALPDAMHRALAD 693 Query: 181 VYATLALVWLIREK 194 AT L ++RE+ Sbjct: 694 AMATAELFLVMRER 707 >gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] Length = 1347 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 64/474 (13%), Positives = 133/474 (28%), Gaps = 39/474 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ FV++D ET G D ++ + V V + E + F + V + Sbjct: 317 LSGSFVVFDTETTGLDSNVEALTEIGAVYV-ENGKINEE-KKFCTFVNPGKPIPQKVVEL 374 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI E E R +F ++ +N FD + R + Sbjct: 375 TGINDAMVADAPTPE-EAIRAFKEFCGDH--VLVAHNAHSFDMLFIRKAGEKAGISFDEN 431 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ +D + A G ++KL + I N H A D Sbjct: 432 TY---------IDTLPMGQALF----------PGLRNYKLDTINKHLEIPPFNHHRAVDD 472 Query: 181 VYATLALVWLI-REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 A + ++ + + K + K + + L+ + ++ + Sbjct: 473 AMALARIFEVMLNDLQEKDIPTVEAINTGLGGNKEVLKKKYYHLIILVQNQVGLKNLYRI 532 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ +K + +L R L A L+ ++ Sbjct: 533 VSAAHTQYFFKKPRVPRSLLNKYREGLLLSPACEAGELY-RAIVAGQPYEQLLRIADYYD 591 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + N T+++ +L A + + + Sbjct: 592 YLEVQPLGNNEFMVRNGQVDSIEAIKNFNRTVIKLGEDLHKPVVATGDSHFQEPEDWIYR 651 Query: 359 Q-LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417 L G T E L + D+ F N P+ ++ Sbjct: 652 AVLQAGNGFKDADNQAPLYYHTTTEMLEDFSYLPQDK-----AFEIVVTN-PNKIAATID 705 Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWV 467 + K I + +L+ + G + L L + L + Sbjct: 706 NNLRA-IPKGTYPPSIPGAEQELRDDTWKHAARDYGTPLPDVLQKRLKKELDSI 758 >gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] Length = 929 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V ++ + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QEGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] Length = 315 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 99/345 (28%), Gaps = 44/345 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYLD 217 Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y + + D ++ L +K N + Sbjct: 218 IKAFYPVMRVKVKGRKKYVLTEILEDDVKEICTSLK---------CEPALKSEVGNTRIM 268 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 L ++ K + L+ ++ D Y Sbjct: 269 LNSLEDVMKL-ESYILEQYDFVLQAFHDYKENEMNADEKLKEYLN 312 >gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. JH642] gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. SMY] gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein ...; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 931 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 30/279 (10%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D+ Q A V + + E + + + Sbjct: 3 KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ Q + + + Q + +NI FD + + ++ + Sbjct: 59 TGISNQMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELHKAGF----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R ++ +KL +L+ + H H A +D Sbjct: 110 -QLPDCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + I EK +L + + D+ ++ + T Sbjct: 156 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFS 215 Query: 241 APVAWHPRYKDSVI--GCNLSGDMRVFQDLDSVQLAKRL 277 + P D I N S ++ ++ + L++ + Sbjct: 216 SFSVREPEAIDVRINEDENFSFEIESWEAGNEKALSELM 254 >gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 288 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N FV D ET G + D+ + A V+ + + I+ + I Sbjct: 113 NEFVAIDLETTGLNPINDKIIEVAAVKF-KDGQIIDRFTTL---INPEIHIPSGITRINH 168 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + V AE + F I+ +N FD + ++ +D Sbjct: 169 ITDEMVKDAPV-LAEVMPCLVNFIEDS---ILVMHNASFDLKFLKHHAMNFGHDIN---- 220 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 NS D L R I++ + +KL +A GI + H A D Sbjct: 221 ---NSYIDTLPTCRNIFSGLEN-------------YKLPTIASHLGICGDSFHRACNDAE 264 Query: 183 ATLALVWLIREKKPK 197 ++ E Sbjct: 265 ICGQVLIKCIETAKD 279 >gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 318 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCASIEEEGKRKV----NKVMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ + L+ L ++ D Y Sbjct: 274 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2] gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580] gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580] gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2] Length = 930 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 30/206 (14%) Query: 2 TNH--FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 N+ +V+ D ET G DR Q A V + + E + + Sbjct: 1 MNNQRYVVIDVETTGNSPKKGDRIIQIAAVVI-ENGQITERFSKY---VNPNQPIPAFIE 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI+ + + + + I + ++C I +N FD + ++ + Sbjct: 57 QLTGISNEMVENE-EPFSAIAEDIFELL--HDSCFIAHNI-HFDLAFVKHELQLAGFGEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 S D +++ R ++ +KL +L+ I H N H A Sbjct: 113 E------CSVLDTVELSRIVFPGFDG-------------YKLTELSEELQIRHENPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D T + + ++ +L + Sbjct: 154 SDAEVTALIFLHMMDRLKRLPIPVLK 179 >gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 473 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 28/192 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D ET G +DR + A +R +++ + + P + Sbjct: 1 MLPAYVLLDLETTGATPLVDRITEIALIRF-ENGQEVSRWQTL---VNPETAIPPFIQRL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI E + + ++ +N+RFD + +N F R D Sbjct: 57 TGIDDGMVATAPH-FKEVAGELLDHLE---GAVLCAHNVRFDHGFLKNEFKRIGID---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R +L ++ S L + + ++ H A D Sbjct: 109 ------LRQKVLCTVKLSRKLY----------PQHRSHSLDSIIERHSLQCGARHRAMGD 152 Query: 181 VYATLALVWLIR 192 V A + + Sbjct: 153 VVALVDFLRAAE 164 >gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 944 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 32/191 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V D ET G + +D + A V+ R E IE+ + +P + + + Sbjct: 1 MDQIYVAIDVETTGLEAGVDEIIEIAAVKF-RTGEVIETFDTL-VQPRHSLPLN--SSRL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E + R F + +N+RFD + R Sbjct: 57 TGITAEMLAGAPR-FSEVAPRFAAFLKN---YPLVGHNVRFDINMLQAQGMRL------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D ++ +++L LA GI H AH A +D Sbjct: 106 ----PQPAFDTFELA-------------TLLMPRTPAYRLSALAETLGIVHDEAHRALSD 148 Query: 181 VYATLALVWLI 191 T + + Sbjct: 149 ADVTRQVFLHL 159 >gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] Length = 931 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D+ Q A V + + E + + + Sbjct: 3 KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ Q + + + Q + +NI FD + + ++ + Sbjct: 59 TGISNQMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELHKAGF----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R ++ +KL +L+ + H H A +D Sbjct: 110 -QLPDCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + I EK +L + + D+ ++ + T Sbjct: 156 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFS 215 Query: 241 APVAWHPRYKDSVI--GCNLSGDMRVFQDLDSVQLAKRL 277 + P D+ I N S ++ ++ + L++ + Sbjct: 216 SFSVREPEAIDARINEDENFSFEIESWEAGNEKALSELM 254 >gi|254506300|ref|ZP_05118443.1| exonuclease I [Vibrio parahaemolyticus 16] gi|219550780|gb|EED27762.1| exonuclease I [Vibrio parahaemolyticus 16] Length = 96 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 1/97 (1%) Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432 MD I +T P L+ L++ F+D R+ L FRYRARNFP TL E E+Q W H + SR Sbjct: 1 MDIIRQTDPNNLAALDISFNDDRIAPLLFRYRARNFPATLDESEQQRWANHCRDYF-ESR 59 Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 IE+Y L++L E++ DE K ++ ++Y+Y+Q ++ Sbjct: 60 IEDYMLNLENLVHEHESDEKKLAILKSVYQYVQKLVS 96 >gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4244] Length = 929 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V ++ + I + + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QEGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis BMB171] gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus B4264] gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis BMB171] Length = 315 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCVAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 217 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ + L+ L ++ D Y Sbjct: 271 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312 >gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] Length = 318 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F + +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HANVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKQAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L +++ + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEEGQRKV----NKVSLDEIVVYEAVKEMLARNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] Length = 1449 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ E + F ++ +N FD + + + Y+ S Sbjct: 478 DEQVANEPKID-EVIGKFVDFV---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + EK + N Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597 >gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 470 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 28/192 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D ET G +DR + A +R +++ + + P + Sbjct: 1 MLPAYVLLDLETTGATPLVDRITEIALIRF-ENGQEVSRWQTL---VNPETAIPPFIQRL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI E + + ++ +N+RFD + +N F R D Sbjct: 57 TGIDDGMVATAPR-FREVAGELLNHLE---GAVLCAHNVRFDHGFLKNEFKRIGID---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R +L ++ S L + + ++ H A D Sbjct: 109 ------LRQKVLCTVKLSRKLY----------PQHRSHSLDSIIERHSLQCGARHRAMGD 152 Query: 181 VYATLALVWLIR 192 V A + + Sbjct: 153 VVALVDFLRAAE 164 >gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] Length = 318 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + K + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS + +K N +L Sbjct: 220 -DIKAFYPVMRLKVKGRKKYVLTEIVEDDVKEICTSL-----ICEPALKSEVGNTRVMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 + K + L+ L R+ D Y Sbjct: 274 SLADVLKL-ESYILEQYDFVLQALDTYRENETNADEKLKEYLN 315 >gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] Length = 237 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 72/245 (29%), Gaps = 35/245 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + +V D ET G + A DR + +V + F P + Sbjct: 1 MIDTYVAIDLETTGTNPAEDRIIEVGAAKV-ECGRVVSIFSTF---VNPQISISPRITSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + V + I + I +N+ FD + + + + + Sbjct: 57 TGITDEDVAGAPV----IADIIADMIAYTKDVPILGHNVIFDYSFIKKAAANSKLEYAKE 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R L L I+ +H A D Sbjct: 113 G-------IDTLKIAR-------------RILPDVPHKNLPALCEHFKIDPGKSHRALDD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN--MTPLVHVSGMFGASRSNTA 238 + L + + P+ + NK + ++ +TP A N A Sbjct: 153 AISASKLYYALYAVNPED-----EMFNKAMVLNYSVKKDSPITPAQKKYLTALAQYHNVA 207 Query: 239 LIAPV 243 + P+ Sbjct: 208 VTVPI 212 >gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] Length = 185 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 29/192 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA----DDYLPDPEAVFIT 61 V++D ET G D + +R+ E +P + A I Sbjct: 12 VVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERIH 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + ++ + +F + +NI FD + R Sbjct: 72 GISNEMVVAAPS----IAQVLPEFLEWAGDAPLVAHNIGFDSGFMRAAARHCGLRW---- 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + + R + L LA G+ H + Sbjct: 124 --APQREICTVQLSRRAF-------------PRERRHNLDSLAGRLGLSFSPQGRHRSLG 168 Query: 180 DVYATLALVWLI 191 DV T A + Sbjct: 169 DVEVTAAAYLRL 180 >gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836] gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836] Length = 602 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + V+V E + + P +TGI Sbjct: 38 TFCVVDLETTGGAPGDSGITEIGAVKVRA-GELVGEFQSL---VNPAEPIPPFIAVLTGI 93 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F C++ +N FD + ++ + YD Sbjct: 94 TDLMVASSPR----IGSVLPAFLEFARGCVLVAHNAPFDVGFLKHDSQVHGYDW------ 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++D D + KL LA H A +D A Sbjct: 144 ---PDFPVVDTALLARRVL--------TPDEVPNCKLGTLAKLFRATTTPNHRALSDARA 192 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + Sbjct: 193 TVDVLHGLFERVGSLGVQTLE 213 >gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] Length = 318 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 36/276 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV- 243 A+ + K + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYLD 220 Query: 244 --AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277 A++P + V G + +D D ++ L Sbjct: 221 IKAFYPVMRLKVKGRKKYVLTEIVED-DVKEICTSL 255 >gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234] gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234] Length = 232 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 60/188 (31%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + GV ++ Q+ T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDSREDRVIEIGGVELENQF-PTGRTIHIYINP-GDRKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ I FF +N FD + F R Sbjct: 62 DFLKDKP-SFADVVEEIVDFF---GDARWVAHNATFDIGFINAEFDRLGLPPVVI----- 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 + D L + R + P+ L L GI+ H H A D Sbjct: 113 DRVTDTLALARRKHPMGPN--------------SLDALCRRYGIDNSHRAKHGALLDSEL 158 Query: 184 TLALVWLI 191 + + Sbjct: 159 LAEVYIEM 166 >gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 1449 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 27/204 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + ++ + V++ + I+ IT IT Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKI-KAGRIIDRYSQL---INPGISIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ ++ E + +F ++ +N FD + + + N Sbjct: 478 NEQVANQPKID-EVIGKFVEFI---GDAVLVAHNAPFDMGFIKR---------DIKEYLN 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + ++D ++ PD + + L DL + G+ H A D AT Sbjct: 525 IDLESSVIDTLQMARDLFPDFKK----------YGLGDLNKSLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208 + + EK + NK Sbjct: 575 ANMFIIFLEKYKEKGIEYLKDINK 598 >gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] Length = 1449 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ + I +F ++ +N FD + + + Y+ S Sbjct: 478 NEQVANEPKID----KVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + EK + N Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597 >gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] Length = 1449 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 27/204 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + ++ + V++ + I+ IT IT Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKI-KAGRIIDRYSQL---INPGISIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ ++ E + F ++ +N FD + + S Sbjct: 478 NEQVANQPKID-EVIGKFVDFI---GDAVLVAHNAPFDMGFIKRDIKEYLNIDLENS--- 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R + L DL + G+ H A D AT Sbjct: 531 ---VIDTLQMAR-------------DLFPDFKKYGLGDLNKSLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208 + + EK + NK Sbjct: 575 ANMFIIFLEKYKEKGIEYLKDINK 598 >gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1] Length = 929 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 32/238 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D DR QF V V + + I + + + +TGI+ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQAVPKQIQSLTGIS 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I+ + I +N+ FD + R Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + SF+L DL+ + G+ H N H A +D T Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L+ LI+EK L ++ +L + + + + P Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218 >gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 27/207 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + G+ + + + + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNVIHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + AE + I FF +N FD + R Sbjct: 62 EFLKDK-KPFAEVAEEILTFFGDAK---WIAHNATFDMGFINAELARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 113 ERVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210 + + + F + Sbjct: 159 LAEVYIEMIGGRQAAFGLSMTATSGQN 185 >gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH187] gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1] Length = 934 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 956 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 32/191 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ D ET G + +D + A V+ + E +E+ +P + + + Sbjct: 1 MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNAD-EVLETFSTL-VQPVHSLPLN--SSRL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT AE + R F + +N+ FD R R Sbjct: 57 TGITADMLASAPR-FAEVAPRFAAFLKN---YPLVGHNVEFDLRMLRAQGMRL------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D ++ +++L LA GI H AH A +D Sbjct: 106 ----PQPAFDTFELA-------------TLLMPRTPAYRLSALAATLGIHHDEAHRALSD 148 Query: 181 VYATLALVWLI 191 T + + Sbjct: 149 ADVTRQIFLYL 159 >gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp. avium ATCC 25291] Length = 648 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 28/207 (13%) Query: 4 HFVIYDYETFGR------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G + A D + V+V R + P+ Sbjct: 44 TFVVVDLETTGGRSTSTGETAPDAITEIGAVKV-RDGVVLGEFATL---VDPQRSIPPQI 99 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + +TGIT ++A +F + ++ +N FD + R + Sbjct: 100 MRLTGITTAMVSDAPAIDA-VLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDI-- 156 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R +L +R + A S +L LA + H A Sbjct: 157 -------AWPRPRVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 201 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 202 LDDARATVDVLHALIERVGNQGVHTYA 228 >gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104] gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104] Length = 643 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 28/207 (13%) Query: 4 HFVIYDYETFGR------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G + A D + V+V R + P+ Sbjct: 39 TFVVVDLETTGGRSTSTGETAPDAITEIGAVKV-RDGVVLGEFATL---VDPQRSIPPQI 94 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + +TGIT ++A +F + ++ +N FD + R + Sbjct: 95 MRLTGITTAMVSDAPAIDA-VLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDI-- 151 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R +L +R + A S +L LA + H A Sbjct: 152 -------AWPRPRVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 196 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223 >gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 934 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] Length = 946 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P + ++ D K E N+ L ++ + + + + L Sbjct: 680 PPATYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + +++ F D ++ +N + Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790 Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G+ + + + L L+ +I Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844 >gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] Length = 934 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] Length = 934 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 1478 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 88/289 (30%), Gaps = 30/289 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + DR + V+V E E+ F + +T IT Sbjct: 452 FVVFDIETTGFNSQTDRIIEIGAVKV-IAGEITETFSEF---INPQIPIPFKITQLTTIT 507 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++A + +F ++ +N FD + R D + Sbjct: 508 DEMVMNADTIDA----VLPRFLEFCGDSVLVAHNAGFDTGFIHENAKRLDLDFHPT---- 559 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D + + + F L +L I+ H A D AT Sbjct: 560 ------IVDTLGLSRSLMTHLAK----------FTLDNLCKNLNIKLETHHRAVDDATAT 603 Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + + + + D N+ I + + + L++ Sbjct: 604 GKIFIKFVQMLEEKEIFDLDQVNEFVAGSEDFIKKGRTYHGIILVKNNTGRVNLNRLVSE 663 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291 + + +L R + S A L+++ + + + Sbjct: 664 SHVRYFNRRPRMPKSLINKYREGLIIGSACEAGELYSAIVDQRSEEEIA 712 >gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] Length = 1449 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G + + + V++ + ++ IT IT Sbjct: 422 FVIFDIETTGLNSHTNEIIEIGAVKI-KSGRIVDRYSQL---INPGRPIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + E + F ++ +N FD + + + Y+ S Sbjct: 478 DEQVANEPKIN-EVIGKFVDFV---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + EK + N Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597 >gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] Length = 1449 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ + I +F ++ +N FD + + + Y+ S Sbjct: 478 DEQVANEPKID----KVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + EK + N Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597 >gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] Length = 708 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 51/172 (29%), Gaps = 28/172 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D ET G DR + A V+V R + I + +TGI Sbjct: 542 TYVVVDVETTGGRAVNDRVTEIAAVKV-RGGKIIAEWSSL---INPERRIPGYITQLTGI 597 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE + + F S + +N+ FD + + + R Sbjct: 598 TNEMVAGAPK-FAEIADDLAAFLS---GAVFVAHNVNFDHSFIASEYRRLER-------- 645 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 R G S+ L L+ GI N H Sbjct: 646 ------------RFHAPKLCTCAGMRKYYPGHGSYGLGPLSKEYGIRLENHH 685 >gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] Length = 1449 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ + I +F ++ +N FD + + + Y+ S Sbjct: 478 DEQVANEPKID----KVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + EK + N Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597 >gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 934 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519] gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii] Length = 1417 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 82/276 (29%), Gaps = 28/276 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G D + V++ R E I+S + +TG Sbjct: 404 DEYVVFDIETTGFSNTSDEITEIGAVKI-RNKEIIDSFGEL---INPHMPIPLKVQELTG 459 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT E R +F + I+ +N FD + R R Sbjct: 460 ITNDLIKDKP-SIDEVLPRFLEFV---GSSILVAHNSDFDMGFIRAKAKRLNL------- 508 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + R KL + GI N H A D Sbjct: 509 AFENKDIDTLKLSRI-------------LLPNLKRHKLNLITNHLGISLENHHRAVDDAK 555 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + E ++ N + + ++ + ++ LI+ Sbjct: 556 ATALVFIKFMEMLIDKDINTFEMVNDKLGKLDYKSIPSNHITIIARDYTGLKNLYKLISA 615 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278 YK+ I +L R + S A L+ Sbjct: 616 SHIDYFYKNPRIPKSLLIKHREGLLIGSACEAGELY 651 >gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2] gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2] Length = 1459 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 71/479 (14%), Positives = 139/479 (29%), Gaps = 48/479 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G +F V +++ + FF KP +TGI Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKV-GEVTQFFIKPQ--AKIGAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q +G+ + +RI+ + + +N +FD + + F N + Sbjct: 481 TQQMLDSEGLSIKDGLQRIYDCL---DGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVT-- 535 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 D L R + KL+D+ G+ + AH D Sbjct: 536 ----VIDTLIASRIGF-------------PNYKRHKLEDVTSRLGVVYDPNVAHRGDYDA 578 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + I + + ++ L + + ++ + LI Sbjct: 579 KVLANVWVNIISELNSKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELIT 638 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-----PVPIKEVH 296 + F +LD + T L IKE+ Sbjct: 639 DCLTKKFINGPITF------KEDFVNLDRSDVLVGSGTLKGLLIDKYFYSSHDDFIKELK 692 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL--RQQTNLRDRFKAIYNKPYTSSSQ 354 + P C + + I K+ + L+ + + + + K + Sbjct: 693 HYDFIEI-PAPQCFEHWIKYGFITTKQLHDGLSEIISEAKKHSKICIATADVKYLDPWDK 751 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFF---RYRARN-- 407 ++ L R + + +L N F +D L + F + A Sbjct: 752 EIFMSLVYAKGIKNARHYLFDYKKAEEGKLVIPNQRFLTTDEMLEQFAFLNDKKLAEEIV 811 Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 +T + +E K L ++ K KL L + + E L + + + Sbjct: 812 IDNTQKIANMAENIEVIKTGLFTPEFDDSKKKLHDLVYKNAHAKYGENLPELIQKRIDS 870 >gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1403 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 28/191 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D E+ G A D + V++ ++ F + V +T Sbjct: 391 QKFVVFDIESTGLSPASDMITEIGAVKI-EDGVIVDRFSRF---VNPMRPIPEKVVELTR 446 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +E I F + +N FD + R + Sbjct: 447 ITNEMVANEPPIEV----VIKDFVEFIGDATLVAHNAEFDTAFIRRDMDKVGLK------ 496 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +LD + A D F L + G+ AH A D Sbjct: 497 ----FDFPVLDTLYLSRAILNDL----------KRFNLSAICKKLGVNLEGAHRAVNDAE 542 Query: 183 ATLALVWLIRE 193 AT + + Sbjct: 543 ATAEAFIKMMK 553 >gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] Length = 934 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 934 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 210 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G + R + V V R E + + P + Sbjct: 1 METIAVIDFETTGMTPSQGARATEIGAVLV-RGGEIVGQYQSLMYS---GVHIPPFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + R + F C + +N FD + R + Sbjct: 57 TGISNAMLRDAPPAE-QVMREVAAFTR---GCPMVAHNAAFDRGFWLAERERAGCEPDL- 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 F+ + + A + KL LA G+ + AH A A Sbjct: 112 -----------------AQEFACTVLLSRRLNTEAPNHKLGTLASWFGLPNNGRAHRALA 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYR 206 D T L+ +++ + + R Sbjct: 155 DALTTAHLLVRLQDLVAQRYADQLQGR 181 >gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens FZB42] gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42] Length = 928 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 80/277 (28%), Gaps = 28/277 (10%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D+ Q A V + + E + + P + Sbjct: 3 KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNQAIPPFIEQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + + I + +NI FD + R+ Y+ Sbjct: 59 TGISSGMVENE-LPFEAVAEEIFHLL---DGAYFVAHNIHFDLGFVRHELSEAGYELP-- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R ++ +KL +L I H H A +D Sbjct: 113 ----DCEVLDTVELSRIVFPGFEG-------------YKLGELCAELNIVHDRPHRADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + I K L + + D+ + +S Sbjct: 156 AEVTGLVFLDILHKLKHLPLPTLKQLRRLSQHFISDLTLLLDSFIHESRPAEEKSCIPYA 215 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277 + P + N + D+ + + L+ + Sbjct: 216 SFSIKEPDHIPVSRPVNAAIDLEKWNEEKEQILSGII 252 >gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1] gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1] Length = 1422 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 63/480 (13%), Positives = 130/480 (27%), Gaps = 57/480 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + V++ E I+ F L + +TGI Sbjct: 407 TFVVVDIETTGLCFDNDEIIEIGAVKI-LNNEIIDRFSSF---IKPQRLIPTNIINLTGI 462 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + + F + +N FD + R + Sbjct: 463 TNDMLKTARPIE----KVLPSFMEFLGDGVFVAHNAEFDSGFIRREASKLGIPF------ 512 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D L + R I+ + +L LA I+ + H A D Sbjct: 513 -KNNILDTLALARIIF-------------SKLKNHRLDTLAKELNIKMGSHHRAIDDAKT 558 Query: 184 TLALVWLIREKKPKLFEYLYDYRN-KNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 ++ + K + N +L+K + + ++ L++ Sbjct: 559 AALILQELLIKVNEAGINNLSQINDIYKLKKGATNLSSYHATILVKDNIGLKNLYKLVSV 618 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN--KC 300 Y+ I +L R + S A LF S V + + Sbjct: 619 SHLDFFYRHPRIPKSLLRTYRKGLLIGSGCQAGELFQSLLHFCSYEKVKEISGFYDFLEI 678 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L + + + + + + + + DV Sbjct: 679 QPLHNNAFLIDGGYASGMQRLEELNRKIYDIGKN-----------SGKPVVMTGDVHFAN 727 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRY---RARN----FPHTLS 413 + E L +D L E A P+ ++ Sbjct: 728 PEDEILRKILLNAQGFQDADKESR--LYFKTTDEMLNE-CKYLGTEIANEVVIKNPNIIA 784 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 ++ + L +I + ++ + + + G++ + + L ++ Sbjct: 785 DEVNDGIVPF-PDGLYPPKIAGAEQEIIDMTYRQAKKLYGEKLPPIVEKRIKHELNSIVN 843 >gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus ATCC 10987] Length = 934 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 229 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 27/216 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D +DR + G+ + + +T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + AE + I FF +N FD + F R Sbjct: 62 EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L G++ H H A D Sbjct: 113 ERVVDTLSMARRKHPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + ++ R + +++ Sbjct: 159 LAEVYIEMIGGRQAALGLGLSGQSGQTARGEMAMED 194 >gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 706 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 31/191 (16%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFI 60 + ++D ET G + A D Q +R+ + + E + PE++ Sbjct: 515 SYTVFDTETTGLNPAQGDEIIQIGALRI-LNGKLLRGERFDQL---VDPGREIPPESIPY 570 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI P+ + AE H + +T ++G+N + Sbjct: 571 HGIHPEMVQGQPRI-AEVLPAFHAY--ASDTVLVGHNVAFDMRFLQLKEAATGL------ 621 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R + S L+ +A G+E H+A +D Sbjct: 622 ---------------RFDQPVLDTLLLASIAQPHEPSHSLEAIAARLGVEITQRHNALSD 666 Query: 181 VYATLALVWLI 191 T + + Sbjct: 667 ALVTAEVFLRL 677 >gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar chinensis CT-43] Length = 315 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 102/343 (29%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 TNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNALDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLARNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS + N +L Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEDDVKEICTSLT-----CEPALNSEAGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312 >gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] Length = 1514 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 28/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++++D ET G ++ + V+V + E+I+ F + +T IT Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKV-KDGEEIDRFSEF---INPEEPIPYSIEQLTSIT 513 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + V + + +F I+ +N FD + + Sbjct: 514 DEMVMHAPTV--DVI--LPKFLEFCGDDIVVAHNAAFDTGFIKKNAKDLGMKFDNT---- 565 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D M + P+ + F L + A +++ + H A D AT Sbjct: 566 ------IMDTMTLSHVLLPELGK----------FTLDRVCKALNVKNEHHHRAVDDANAT 609 Query: 185 LALV 188 + Sbjct: 610 AKIF 613 >gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] Length = 315 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 36/276 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV- 243 A+ + K + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYLD 217 Query: 244 --AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277 A++P + V G + +D D ++ L Sbjct: 218 IKAFYPVMRLKVKGRKKYVLTEIVED-DVKEICTSL 252 >gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] Length = 934 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKRHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K] gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K] Length = 1433 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 74/484 (15%), Positives = 151/484 (31%), Gaps = 53/484 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V++D ET G D +F ++ + I++ + FF KP + + ITG Sbjct: 398 ETYVVFDLETTGLSPIFDDIIEFGAQKI-LNGKVIDTLQ-FFVKPNKE--ISEKITLITG 453 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q + E E ++I +F + +N FD NF + + Sbjct: 454 IKNQDVENA-ISEKEALKKILEFMGDH---TVVAHNATFDM---------NFINEKIEKY 500 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180 + S ++D + P+ + F L++LA +G AH A D Sbjct: 501 NFQESNLQIIDTLVVSKIIEPEAKK----------FSLENLASRSGIIYNSTEAHRADYD 550 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 + L +K + +D + + + + ++ + I Sbjct: 551 ADVLAKVWNLYIQKLSDMNVKYFDDIYNFKSNIIYEKTRPFEITILAKNQSGLKELFQKI 610 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNK 299 + + + + + + S L + E+ ++E Sbjct: 611 SLTSTKQYFNGPKMFFEDLLEKSKNILIGSGTLKSLIIN---EVFRGTRKGLREYLKYFD 667 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 ++P + + L+ + L A+ + Y + + + Sbjct: 668 YVEIIPPKNFSHWIKNEDILKEELLEGLKILVEESKKLNKIVVAVGDVRYVQKDEKILHE 727 Query: 360 LYDG--------FFADVDRQIMDRILRTAPEQLSTLNLPF---SDRRLPELFFRYRARNF 408 +Y Q + F D +L +N Sbjct: 728 IYINAKGLQGIRHPLFKYDQSETDYPTLNYLNTQEMIDQFLFLQD---NDLIKEIVVKN- 783 Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464 H +S + + + E KK L +IE N L+ L + E G E +I+ + + L Sbjct: 784 THLISNQIENNI-EVIKKDLFTPKIENSANLLRELVYAKAFEIYGKNLPELIISRIEKEL 842 Query: 465 QWVI 468 +I Sbjct: 843 NPII 846 >gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] Length = 315 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + K + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS + +K N +L Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEIVEDDVKEICTSL-----ICEPALKSEVGNTRVMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 + K + L+ L R+ D Y Sbjct: 271 SLADVLKL-ESYILEQYDFVLQALDTYRENETNADEKLKEYLN 312 >gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] Length = 934 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRWAGYTEV 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family [Coprococcus catus GD/7] Length = 245 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 28/203 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V++D ET G D + ++V Q + + F + + Sbjct: 1 MVKDYVVFDLETTGLSPDKDTIIEIGALKV-IQGKVADRFSEF---INPHQKLTQQISEL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + F ++ +N+ FD +++ + Sbjct: 57 TGITDDMLAGA----RNLQVVVGDFVDFCEDYVVVGHNLGFDYRFTKMAAEKYHLPF--- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D L + + ++ S L L GI + +AH A D Sbjct: 110 ----EHEGIDTLKIAKTVH-------------KDLPSRSLGALCEHYGIINSSAHRAYHD 152 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 AT L + L+ Sbjct: 153 ALATAKLYQTLAHYFETSEPKLF 175 >gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] Length = 318 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + AT+ KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHATNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ + L+ L ++ D Y Sbjct: 274 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 648 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V R + + P+ Sbjct: 42 TFVVVDLETTGGRTKATGGNAPDAITEIGAVKV-RGGVVLGEFATL---VDPERSIPPQI 97 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A + F ++ +N FD + R R Sbjct: 98 VRLTGITTAMVSDAPRIDA----VLPMFLEFAGDAVLVAHNAGFDIGFLRAAAARCDI-- 151 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R +L +R + A S +L LA + H A Sbjct: 152 -------AWPRPKVLCTVRLARRVL--------SREEAPSVRLGALARLFAVAAQPTHRA 196 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 197 LDDARATVEVLHALIERVGNQGVHTYA 223 >gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 934 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012] Length = 934 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEEXRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] Length = 934 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] Length = 865 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 25/192 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G D + D Q A VR+D + S E + P ++ + Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFE----QLLHPSKPVGQSEAVHH 552 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + G + F ++ +N+ FD + R + Sbjct: 553 FSDALLAERGGEPPQVLAEFCSFVR---GAVVVGHNVGFDLTILASELSRLGLPPAEYE- 608 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D LD+ R Y + KL+ L+ E ++HDA D+ Sbjct: 609 ----EYYDTLDLARRFY-------------PDLPNHKLETLSKLLDTEVKSSHDAMDDIL 651 Query: 183 ATLALVWLIREK 194 AT ++ + Sbjct: 652 ATKDVLLHLTAH 663 >gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS] gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 630 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 28/203 (13%) Query: 4 HFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D + V+V R E + P+ V + Sbjct: 29 TFVVVDLETTGGRATGERPDAITEIGAVKV-RGGEVLGELATL---VDPGRAIPPQIVSL 84 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F ++ +N FD + R + Sbjct: 85 TGITTAMVCAAPRIE----SVLPAFLEFARGSVLVAHNAGFDIGFLRAAAEQCGL----- 135 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R +L ++ D A S +L LA + H A D Sbjct: 136 ----TWPRPPVLCTVKLARRVL--------TRDEAPSVRLSALAQLFRAKTTPTHRALDD 183 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 AT+ ++ + E+ + Y Sbjct: 184 ARATVDVLHGLIERIGNQGVHTY 206 >gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM 44728] gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM 44728] Length = 578 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 25/196 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F++ D ET G + V+V R E + D +TGI Sbjct: 25 TFMVVDLETTGVASDACSITEIGAVKV-RGGEVLGEYATL---VNPGEAIDARISALTGI 80 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + F + +N FD + R+ + Sbjct: 81 TDAMVADAPAIE----EVLPSFLEFARGAVWVAHNAPFDVGFLRSACAQAELPW------ 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R ++D + + +L LA G +H A D A Sbjct: 131 ---PRPQVVDTVVLARRL--------VDRSEVPNKRLSTLARYFGARVKPSHRALDDARA 179 Query: 184 TLALVWLIREKKPKLF 199 T+ ++ + E+ + Sbjct: 180 TVDVLHALLERLGTHY 195 >gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] Length = 957 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 30/255 (11%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 T + + D ET G DR Q V + + ++ + E + Sbjct: 5 TTTYAVLDLETTGSTYDNGDRIIQIG-VAFVQNGQVVDQFAT---DIFPNQEIPREITKL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT ++ R E I + + +I +NI FD + F + Y + Sbjct: 61 TGITNEQVKRAPK--FEAVAEI--LWQKLSNTVIVAHNIGFDYKFLDKSFQAHGYPAM-- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + R D ++++R ++ + S+KL + LA+GI+ NAH A D Sbjct: 115 ----THDRVDTVEMVRTLFPTAD-------------SYKLGEFCLAHGIQLENAHTAIDD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT ++ + +EK + L+ Q + ++ I Sbjct: 158 AVATAHILIMCQEKVATMPVELFAQL--QPFLHYFIGQTGDYMALWFKDHKGAKRPCEYI 215 Query: 241 APVAWHPRYKDSVIG 255 AP +P+ + I Sbjct: 216 APFVLNPKSANFHIF 230 >gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] Length = 934 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. Ames] gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus anthracis str. Sterne] gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] Length = 934 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + E + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] Length = 241 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 27/216 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D +DR + G+ + + +T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + AE + I FF +N FD + F R Sbjct: 62 EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L G++ H H A D Sbjct: 113 ERVVDTLSMARRKHPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + ++ R + +++ Sbjct: 159 LAEVYIEMIGGRQAALGLGLSGQSGQTARGEMAMED 194 >gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] Length = 1449 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + E + F ++ +N FD + + + Y Sbjct: 478 DEQVANEPKIN-EVIGKFVDFV---GDAVLVAHNAPFDMGFIKRDIKKYLNIDY------ 527 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D L + R + L DL G+ H A D AT Sbjct: 528 KCSVIDTLQMAR-------------DLFPDLKKYGLGDLNKTLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + EK + N Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597 >gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] Length = 934 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] Length = 934 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] Length = 946 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G V R Q V V + + I E K + +TGI Sbjct: 14 YAVVDLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVVPLTIEQLTGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + + + I +N+ FD + F R Sbjct: 70 KNNDVKDAPLFE-DVAPTLKSLLDD---TIFVAHNVNFDFPFLNAEFERAG------EAP 119 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + + A SF+L+DL I+H H A +D A Sbjct: 120 LTIPAIDTVTLSQI-------------LMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVA 166 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ + ++ L Sbjct: 167 TAHLLIELLKRLADLPTITLQ 187 >gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] Length = 318 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + V+V + ++ P ++ +P + GI Sbjct: 32 NYTMLDIETTGLSPYRDRITELGAVKVRNN-QIVDQYTNLVKFPKNNKVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +G+ + + +F IIGYN NF ++ Sbjct: 90 TEEQIVNEGIPAEQAIKEFREFIGDDP--IIGYNVNFDL----------NFLYDLSQKYN 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R A+ +L D GI V H AD Sbjct: 138 LPVLNNDYVDVLRLARAYY----------PRERHNRLIDCMQRAGIAQVEQHHGLADSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + + + R KN Sbjct: 188 TIKVYNDFNKHFTEELLEAARSRIKN 213 >gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956] gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956] Length = 943 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G V R Q V V + + I E K + +TGI Sbjct: 11 YAVVDLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVVPLTIEQLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + + + I +N+ FD + F R Sbjct: 67 KNNDVKDAPLFE-DVAPTLKSLLDD---TIFVAHNVNFDFPFLNAEFERAG------EAP 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + + A SF+L+DL I+H H A +D A Sbjct: 117 LTIPAIDTVTLSQI-------------LMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVA 163 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ + ++ L Sbjct: 164 TAHLLIELLKRLADLPTITLQ 184 >gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria innocua Clip11262] gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262] Length = 928 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%) Query: 1 MTNH-FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M +++ D ET G + DR QFA V +++E+ F + Sbjct: 1 MKKKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQ 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI+P+ + E + + I I +N+ FD + R Sbjct: 57 ELTGISPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI--- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ R +Y G S+KLQDL+ G+ H H A Sbjct: 110 ---SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRAD 153 Query: 179 ADVYATLA 186 +D T Sbjct: 154 SDAEVTAD 161 >gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Oceanobacillus iheyensis HTE831] gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 939 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 28/208 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 N FV+ D ET G + D+ + V ++ E I++ FF P + Sbjct: 1 MNRFVVIDLETTGHAPSKNDKIIEIGMVIIEGD-EIIDTKTTFF---NPGQPIPPFITNL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + E + I I +N+ FD + N D Sbjct: 57 TGISDDDVADAPL-FTEKALSIKSILEDS---YIIAHNVNFDLGFLNAELKENGIDRLHN 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +LD + A +KL L+ ++H + H A +D Sbjct: 113 ---------QVLDTVELSRILF----------PTAPGYKLSQLSDHFNLQHDDPHRALSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNK 208 Y T L + +K +L + K Sbjct: 154 AYVTAKLFQKLMDKINQLPYETIEQWLK 181 >gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] Length = 315 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLLEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312 >gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] Length = 1437 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 63/475 (13%), Positives = 139/475 (29%), Gaps = 47/475 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + + +T IT Sbjct: 420 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 475 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + RN + Sbjct: 476 DEMVSAAD-DEAIVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRNGFSEI------ 525 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ L LA + + H A D AT Sbjct: 526 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 572 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMFGASRSNTALIAPV 243 L++ + + + + N + P + V A N + + Sbjct: 573 GYLMYKLLDAFNEKYHEDNLNNLNNYAAHGEVYKRARPSHMTVLAKNQAGLKNLYKLVSI 632 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A + + S R+ + L + ++ ++ + Sbjct: 633 AS-TKDFYRIPRTPKSDLARLHEGLFYGSGCWQGDVFIAMMQKGYDEAREKARFYDFLEV 691 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---L 360 P + + D ++ E ++ + + ++ + D + + Sbjct: 692 QPPKNYSQLIEDGLIKDEEQLEEIISNIYKLGKELNKPVVATGDAHYVEPHDAIYRTILI 751 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQ 418 + + + +++ F D + N E Sbjct: 752 SAQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIENTNKI--ADEIS 803 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 + K+ L IE +++ L + E G+ + + + + L +I Sbjct: 804 EIQ-PIKEGLYPPHIEHADEEMKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 857 >gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] Length = 934 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 64/206 (31%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + +L A S+KL+DLA + +EH H A Sbjct: 113 HCPKVDTVELGQIL-------------------LPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL J1-023] Length = 928 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%) Query: 1 MTNH-FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M +++ D ET G + DR QFA V +++E+ F + Sbjct: 1 MKKKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQ 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI+P+ + E + + I I +N+ FD + R Sbjct: 57 ELTGISPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI--- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ R +Y G S+KLQDL+ G+ H H A Sbjct: 110 ---SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRAD 153 Query: 179 ADVYATLA 186 +D T Sbjct: 154 SDAEVTAD 161 >gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL S4-378] Length = 931 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%) Query: 1 MTNH-FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M +++ D ET G + DR QFA V +++E+ F + Sbjct: 4 MKKKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQ 59 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI+P+ + E + + I I +N+ FD + R Sbjct: 60 ELTGISPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI--- 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ R +Y G S+KLQDL+ G+ H H A Sbjct: 113 ---SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRAD 156 Query: 179 ADVYATLA 186 +D T Sbjct: 157 SDAEVTAD 164 >gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] Length = 483 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F D ET G VA DR + ++ R E + + P +T Sbjct: 10 TTTFAFLDLETTGGSVATDRITEIG-IQFWRAGECVGQWQTL---VNPKTRISPFIEQLT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E + + + Q + + +N RFD + + F R Sbjct: 66 GISNAMVADAPLFE-DIADELEQRL---DGVVFVAHNARFDYGFVKGEFRRLGR------ 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +L ++ + L +G++ V H A DV Sbjct: 116 ----MFVAKVLCTVKLSRRLY----------PEFRRHNMDALIERHGLQQVQRHRAMGDV 161 Query: 182 YATLALVWLIREKKPKL 198 A L + ++ + Sbjct: 162 AAMLGFFEHVLAQQGED 178 >gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 934 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A] gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A] Length = 1504 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 44/388 (11%), Positives = 109/388 (28%), Gaps = 25/388 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G D+ + A +V + E EV + IT IT Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVRGGF-IAERFEVL---INPEEQLSETTKRITNIT 467 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +E E +F ++ +N FD + Sbjct: 468 DEMVENEKTIE-EVLPTFLEFIK---GTVLVAHNASFDIGFIYEKSRLLGL------QHE 517 Query: 125 GNSRWDLLDVMRAIY-------AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + D L++ R Y + + F L+ L + H A Sbjct: 518 PFAVIDTLNIARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRA 577 Query: 178 KADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 D YAT + ++++ + ++ + + ++ ++ ++ Sbjct: 578 IYDAYATAEVFLNMLQDFYKEEIYSYFELQASLDMNEVWRHPIPKYATVLAQTQEGYKNL 637 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 L++ + + R + S +F + L + Sbjct: 638 FKLVSDALTTHFDGGPRLLKSAFLKYREGLLIGSGTEHSEVFEAALNLNDEQLKEAISFY 697 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQD 355 + P++ E + + + + +++ + + + Sbjct: 698 --DYIEVQPLNAYLHLEKEIGALGREVIQAAIKKIITYAKEQNKIVIASSNAHYLNPEDK 755 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQ 383 ++Y + T+P+Q Sbjct: 756 KYREIYIQTKSVGGGLHPLANYETSPDQ 783 >gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L] Length = 934 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC] gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC] Length = 250 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G DV DR +FA +R E I+S E + E+ I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E RI FF + I +++ FD R Sbjct: 65 DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + D ++ + + L+ LA + H H A DV Sbjct: 112 --------ETLLPKHHYVIDTLRLAKGYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163 Query: 185 LALVWLIREKKPK 197 + + + ++ Sbjct: 164 VKVFKHLTKRFRT 176 >gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type) [Gordonibacter pamelaeae 7-10-1-b] Length = 445 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 27/192 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F+ +D ET G DR + + + + S EA I Sbjct: 5 KSKFIAFDVETTGLSEYADRIVEIGAICF-EDRKPMRSFSTL---VNPGVRISVEASRIN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I+ + E + + +F I+ +N RFD + +N R Sbjct: 61 HISNEMLGNAP-SENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLG----- 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + + D L + R ++K +A I++ H A Sbjct: 115 --YSGTINYVDTLSLSR-------------RLISDLPNYKQPTVAQYFNIQNNAEHRAYG 159 Query: 180 DVYATLALVWLI 191 D + + Sbjct: 160 DAEVCGMMFCKL 171 >gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810] gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family [Brachybacterium faecium DSM 4810] Length = 551 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 57/201 (28%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G D A D + V+V R E + F + +TGI Sbjct: 20 TLVVVDLETTGTDPAADAITEIGAVKV-RGGEVLGEFRTF---VDPERPIPAYIASLTGI 75 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T F + +N RFD + +W Sbjct: 76 TDAAVAEAP-SIRTVLPMFLDF---AGDAALVAHNARFDIGFLSAQAAAC-----EITWP 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R R D +L LA G H A +D A Sbjct: 127 RP-RVLDTLALAR-----------TVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARA 174 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ I E+ + Sbjct: 175 TVDVLHAIIERLGPSGASTLE 195 >gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 225 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 26/185 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D ET G DVA + V V R + F P P +TGI Sbjct: 56 SYVVIDIETTGLDVARSAIIEIGAVHV-RNGAVSGRFQTFLT-PEPYQSLSPFITNLTGI 113 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E R+ F + +N+ FD + + YR + + Sbjct: 114 TDSDLVGAP-TFREILPRLRDFL---GGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYL 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + G + + L+ L GI N H A D Sbjct: 170 DTKKLAKTV-------------------VPGLSHYSLEALCKHFGIA-GNHHRAVDDCEL 209 Query: 184 TLALV 188 T ++ Sbjct: 210 TEKVL 214 >gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512] Length = 241 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 27/216 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D +DR + G+ + + +T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + AE + I FF +N FD + F R Sbjct: 62 EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L G++ H H A D Sbjct: 113 ERVVDTLSMARRKHPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + ++ R + +++ Sbjct: 159 LAEVYIEMIGGRQAALGLGLSGQSGQTARGDMAMED 194 >gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 1480 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/371 (11%), Positives = 100/371 (26%), Gaps = 32/371 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+++D ET G D + V+V + E ++ F + +T I+ Sbjct: 456 FIVFDIETTGFSAKNDAITEIGAVKV-VKGEIVDRFSTF---VNPRRPIPFKIEELTHIS 511 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + +F II +N FD + R + + Sbjct: 512 DAMVMNAPFIE----DILPKFLDFCEDYIIVAHNAGFDTGFIRENAKKINKE-------Y 560 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D + + R FKL + A I H A D AT Sbjct: 561 NPSIIDTVAMARL-------------LLPELNRFKLDTVCKALNISLEGHHRAVNDAEAT 607 Query: 185 LALVWLIREKKPKLFEYLYD--YRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + ++ ++ ++ ++ + LI+ Sbjct: 608 AQIWVEFIKRLKDKGISKLSEVASLGETNADIVKKTKYNHVIILAKNDIGRINLYKLISL 667 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKC 300 K I ++ MR + S ++ + +D + + + Sbjct: 668 SHIDYFNKRPRIPKSILAKMREGLIIGSACEQGEVYKALLNDATDDELNRIVSFYDYLEI 727 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 + + ++ N ++ A + + + ++ ++ Sbjct: 728 QPIANNMFLIEDEQNDIHSIEDLQEINKRIVELGNVYEKPVVATCDVHFLNPEDEIYRRI 787 Query: 361 YDGFFADVDRQ 371 D Sbjct: 788 IFYGKGYKDAD 798 >gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis] gi|1090178|prf||2018296A DNA polymerase III Length = 1435 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 69/476 (14%), Positives = 151/476 (31%), Gaps = 52/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+YD ET G L+ QF + + IE+ F D +TGIT Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVI-KNGRIIETHHFF---IKPKSKLDSFTTKLTGIT 459 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G E +I F I+ +N FD + + F N + Sbjct: 460 QEHL-EKGYELQEALEKISSIFK---ARIMVAHNAAFDHNFLKQKFIDNNIEFEE----- 510 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 D L++ + + S++L ++A + + AH A D Sbjct: 511 -MISIDTLNLAKVLNPIY-------------RSYRLGEVASKLSVVYDPSIAHRADYDSS 556 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG-----ASRSNT 237 + L + L+ N K + ++ ++ Sbjct: 557 VLTNIFILQMSHLKEKGINLFKELNSLSSEKFYSKMFAKDISIIAKNQAGLKELFKINSD 616 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 L +P+ I + + + L+S + K LF++ +++ + + Sbjct: 617 VLTKYYFANPKMFWEDIKRSKNLLIG-SGGLNSPLIDKLLFSTQEDVLNEIDK--YDYIE 673 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSS 352 P + K ++ I ++ ++ + + + Sbjct: 674 IPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKNKIIVAIGEPRYNEKWQKIIHEIYIN 733 Query: 353 SQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410 S +++ L+ F D ++I +T E + + PEL + Sbjct: 734 STGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQEFSFLYD----PELIEEIVV--KSN 787 Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 +S + ++ ++ K L + ++ KL+ L E + + L + + ++ Sbjct: 788 LISSQIEK--IQVIKDKLYTPKFDDSHIKLKKLVYENAWKKYGKNLPEIIEQRIEK 841 >gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] Length = 315 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 105/344 (30%), Gaps = 40/344 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++V+ D+ET G + D+ Q A V+ R E ++ + + +TGI Sbjct: 9 NYVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E E F +T +I +N FD + ++ Sbjct: 65 TNYRVSDAPTIE-EVLPVFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP----- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D + + + A + KL+ L GI +H+A D Sbjct: 116 -KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCIT 160 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 A+ + + L NK L + + + + ++ + + + + Sbjct: 161 CAAVYQKCASIEEEAKRKL----NKEALDETVVYEAVKEILVRNKRDIEWIRCMNVGSYL 216 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + V+ + G + K + TS +K N +L Sbjct: 217 --DIKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSLA-----CEPALKSEVGNTRIML 269 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L +Q D Y Sbjct: 270 NSLEDVLKL-ESYILEQYDFVLQALRDYKQSEMNADEKLKEYLN 312 >gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1216 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KSGRIMDRYSQL---INPGRPIPYHITEITSIT 477 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ + I +F ++ +N FD + + + Y+ S Sbjct: 478 DEQVANEPKID----KVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + EK + N Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597 >gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens TA208] gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens LL3] Length = 928 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 80/277 (28%), Gaps = 28/277 (10%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D+ Q A V + + E + + P + Sbjct: 3 KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNQDIPPFIEQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + + I + +NI FD + R+ Y+ Sbjct: 59 TGISTGMVENE-LPFEAVAEEIFHLL---DGAYFVAHNIHFDLGFVRHELSEAGYE---- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R ++ +KL +L I H H A +D Sbjct: 111 --LTDCEVLDTVELSRIVFPGFEG-------------YKLGELCAELNIVHDRPHRADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + I K L + + D+ + A S Sbjct: 156 AEVTGLIFLDILHKLKHLPLPTLKQLRRLSQHFISDLTLLLDSFIHENRPAAEESCIPYA 215 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277 + P + + + D+ + + L+ + Sbjct: 216 SFSIKEPEQIPASRPVSAAIDLEKWNEEKERLLSDII 252 >gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] Length = 250 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G DV DR +FA +R E I+S E + E+ I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E RI FF + I +++ FD R Sbjct: 65 DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + D ++ + + L+ LA + H H A DV Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163 Query: 185 LALVWLIREKKPK 197 + + + ++ Sbjct: 164 VKVFKHLTKRFRT 176 >gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] Length = 934 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEV 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 788 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G R + V+V ++S + +TGI+ Sbjct: 623 YVVVDVETTGGCKPGHRITEIGAVKV-INGRVVDSWSSL---INPERRVPHFITRLTGIS 678 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + F CI +N+ FD + + + R Sbjct: 679 NDMVEEAPL-FCEVIDDLECFMQD---CIFVAHNVNFDYGFFKLEYARLER--------- 725 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + L +R + + G+ S+ L +L G+ N H A D A Sbjct: 726 -SFSMPKLCTVREMRKYY----------PGSKSYSLGNLTKEYGLSLDNHHRALCDAQAA 774 Query: 185 LALVWLIREK 194 L+ ++ EK Sbjct: 775 AELLIMVNEK 784 >gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp. ART55/1] Length = 1603 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G ++ + V+V + E +++ F + +T I Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVKV-KDGEVVDTFSEF---INPGVPIPYQIEQLTSIN 602 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F I+ +N FD + R Sbjct: 603 DDMVKDAPM--FDVI--VPRFVEFCGDDIVVAHNASFDTGFVRMNAEELGLKFDNT---- 654 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +LD M + P+ + F L + + + + H A D AT Sbjct: 655 ------VLDTMTLSHILLPELGK----------FTLDRVCKELKVVNAHHHRAIDDAEAT 698 Query: 185 LALVWLIREK 194 + + + + Sbjct: 699 AKVFFKLLDM 708 >gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] Length = 463 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 69/221 (31%), Gaps = 35/221 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G D+ + A + D + ++S + ITGIT Sbjct: 2 YTIIDVETTGLRPTDDKITEIAIYKHDGE-SVVDSFHSL---VNPECYISDRITQITGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++ I + +N FD + R F Y R + Sbjct: 58 NDMVANAPK-FYEIAKDILAITE---GTVFVAHNAHFDYGFVREEFKALGYKFTRKT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L I+ N H A AD AT Sbjct: 111 -------LCTVRVSRKVF----------PGLPSYSLAKLCKHFKIQLTNHHRASADALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + + + EK KN + I +N+ P ++ Sbjct: 154 VEVFEKLLEKNSSK-------LTKNVVETEIKAKNLPPKIN 187 >gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] Length = 1390 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 82/276 (29%), Gaps = 31/276 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G D D + V + R E E+ + F + E V +T IT Sbjct: 370 VCFDIETTGLDNRRDVIIEIGAVIL-RNGEIAETFDTF---VSPGRPLSREIVELTSITD 425 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E I F + +N FD + R + S Sbjct: 426 KMLEGAPSQE----EAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTS---- 477 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + PD + +KL +A + H A AD Sbjct: 478 ------IDTLILAQNLLPDLGK----------YKLDIVAEHLRLPPFKHHRADADAGMVA 521 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLID---IQNMTPLVHVSGMFGASRSNTALIAP 242 ++ + L + N R + + L+ ++ R+ LI+ Sbjct: 522 YMLVPFFKMLEDLGIHTLQSINPEMTRLRVKGKARRQPKHLIVLAKNNMGLRNLYTLISK 581 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278 + ++ +L R L S A LF Sbjct: 582 AHLEHFKRYPIMPKSLINQYREGLILGSACEAGELF 617 >gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci RD1] gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 249 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 26/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G DV DR +FA +R I+S E D + E+ I I+ Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAIRFTFD-RVIDSMETL---INPDRVISAESQRIHHIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F + I +++ FD R + Sbjct: 65 DAMLKDQPRI-AEVFPKIKSFLKEGD--YIVGHSVGFDLQVLSQEAERIGESFLSKYYVI 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + L+ LA+ + + H A DV Sbjct: 122 DTLRL-------------------AKEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162 Query: 185 LALVWLI 191 +++ Sbjct: 163 ISIFKHF 169 >gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579] gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] Length = 315 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + AT+ KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHATNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + + K + TS +K N +L Sbjct: 217 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ + L+ L ++ D Y Sbjct: 271 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312 >gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42] Length = 240 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + G+ + + +T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + A + I FF +N FD + F R Sbjct: 62 EFLKDK-KPFAAVADEILAFFGDGK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 + D L + R + P+ L L GI+ H H A D Sbjct: 113 DKVIDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLFEYLYD 204 + + + F Sbjct: 159 LAEVYIEMIGGRQAAFGLSIS 179 >gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 237 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 69/214 (32%), Gaps = 28/214 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +V+ D ET G + V + + + + + + IT Sbjct: 1 MNKYVVVDIETTGAHPVQSEIIEIGAVYI-EEGQVKKIFNEL---VRPTQIISDYIISIT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + +E E R F +IG+N I FD + + Sbjct: 57 GITNEMVADAPPIE-EVMPRFIDFCEDVP--LIGHNIILFDYRMLKTKATALGF------ 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + A S KL DL I NAH A D Sbjct: 108 -TFEKMGVDTLVISRKMLA-------------HLPSRKLGDLCEHYAISLENAHRAYHDA 153 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKNQLRKL 214 +AT L L E + K + R K ++ K+ Sbjct: 154 FATYELFEKLRNEFEKKEAKLFLPERMKWEVPKI 187 >gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134] gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134] Length = 245 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 27/206 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V +D ET G D DR Q A +++ K+E PE + Sbjct: 4 KKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK----ERLINPTIPIPPEVTKVH 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + + ++ + +F + GYN++ FD F R Sbjct: 60 GVSDEMVKDAP-TFHQVAKSLFEFIR--GCDLAGYNHLNFDMPLLIEEFARAGV------ 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +DVM+ Y F L E NAH+A AD Sbjct: 111 -VFPEPDVQYIDVMKVYYHFH-------------PRTLSAAYQLYCHKELENAHNAMADT 156 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207 ATL + + + N Sbjct: 157 QATLEIFESQLATHFDEEPSINEIHN 182 >gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 199 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 29/192 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D+ET G + R + V + ++ + P +T Sbjct: 1 MESIAVIDFETTGVSPSQARATEIG-VAIIEDGRIVDRYQSLM---NSGAWVPPFIEQLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E + + F + +N FD + R Sbjct: 57 GISNAMLRKAPPSE-QVMNEVADFI---GERPLLAHNASFDQKFWDAELARVRR------ 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 R F+ + A S KL +L G + AH A AD Sbjct: 107 --------------RRSQPFACSLLLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALAD 152 Query: 181 VYATLALVWLIR 192 L + Sbjct: 153 AEMAANLTLHLF 164 >gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 643 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 28/207 (13%) Query: 4 HFVIYDYETFGR------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G + A D + V+V R + P+ Sbjct: 39 TFVVVDLETTGGRSTSTEETAPDAITEIGAVKV-RGGVVLGEFATL---VDPQRSIPPQI 94 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + +TGIT ++A +F + ++ +N FD + R + Sbjct: 95 MRLTGITTAMVSDAPAIDA-VLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDI-- 151 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R +L +R + A S +L LA + H A Sbjct: 152 -------AWPRPRVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 196 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223 >gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] Length = 250 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G DV DR +FA +R E I+S E + E+ I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E RI FF + I +++ FD R Sbjct: 65 DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + D ++ + + L+ LA + H H A DV Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163 Query: 185 LALVWLIREKKPK 197 + + + ++ Sbjct: 164 VKVFKHLTKRFRT 176 >gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1] gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 242 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 27/203 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + V + ++ T +F P P+A + GI+ Sbjct: 4 IIFDTETTGLDPREDRVIELGCVELANRF-PTGRTLHYFINPQ-GRSVHPDAQAVHGISD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 V AE +F + + +N FD + F R + + Sbjct: 62 ADLAGKPV-FAEILDEFLEFI---DGAKLVAHNANFDIGFINAEFQRVGQP-----YIDP 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 113 ARVIDTLAIARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDAEL 158 Query: 184 TLALVWLIREKKPKLFEYLYDYR 206 + + K F + Sbjct: 159 LAEVYIELAGGKQASFGLEIATQ 181 >gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7] gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7] Length = 224 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 21/203 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 +V++D ET G + DR + ++V + ++ + +TG Sbjct: 41 YVVFDLETTGFNKKEDRIIEIGAIKV-KNGRVVDRFSTLCAPIKGGKPMYISAKITEVTG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I L + E+E + + + + +N ++FD + + R+ + Sbjct: 100 IKNVDLLNQ-IPESEAVKNFMCWLGE-SKISVAHNGLKFDIPFLKEACKRSNVEFKFTH- 156 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +LD M A + + + K + LA G+++ AH A D Sbjct: 157 --------ILDTMLLSKALNY------VNNGNIPNNKQETLARYFGVDY-QAHRAVNDCE 201 Query: 183 ATLALVWLIREKKPKLFEYLYDY 205 A L + ++ + L Sbjct: 202 ALLKIFDKLKNDAKNINFSLKKI 224 >gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] Length = 954 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 85/279 (30%), Gaps = 30/279 (10%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D+ Q A V + + E + + + Sbjct: 26 KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 81 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ Q + + + + +NI FD + + ++ + Sbjct: 82 TGISNQMVEHE-QPFEAVAEEVFHLL---DGAYFVAHNIHFDLGFVKYELHKAGFHLP-- 135 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R ++ +KL +L+ + H H A +D Sbjct: 136 ----DCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 178 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + I EK +L + + D+ ++ + Sbjct: 179 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFIYENRHTEIPGYARFS 238 Query: 241 APVAWHPRYKDSVIGC--NLSGDMRVFQDLDSVQLAKRL 277 + P+ D N S ++ ++ + L++ + Sbjct: 239 SFSVREPQSFDEHANEDGNFSFEIENWEAGNEKALSELM 277 >gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 318 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 101/345 (29%), Gaps = 44/345 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + NK L +++ + + ++ + + + + Sbjct: 165 AAVYQKCAAIEEE----RQRKVNKVSLDEIVVYEAVKEMLARNKRNVEWLRCMNVGSYLD 220 Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 Y + + D ++ L +K N + Sbjct: 221 IKAFYPVMRVKVKGRKKYVLTDILEDDVKEICTSLK---------CEQALKSEVGNTRIM 271 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 L ++ K + L+ L ++ D Y Sbjct: 272 LNSLEDVMKL-ESYILKQYDFVLQALHDYKENEMNADEKLKEYLN 315 >gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] Length = 1435 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 57/474 (12%), Positives = 125/474 (26%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 473 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + R Sbjct: 474 DEMVSAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 523 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ L LA + + H A D AT Sbjct: 524 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 570 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P Sbjct: 571 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 630 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ + L + ++ ++ + Sbjct: 631 ASTKDFYRIPRTPKSDLARLHEGLLYGSGCWQGDVFVAMMQKGYDEAREKAKFYDFLEVQ 690 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D ++ E ++ + + + + D + + Sbjct: 691 PPKNYSQLIEDGLIKDEEQLEEIISNIYKLGKELKKPVVATGDAHYVEPHDAIYRTILIS 750 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D N E + Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQEMLN-AFSFLGEDV-----AKEIVIDNSNKI--ADEISE 802 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L I +L+ L + E G+ + + + + L +I Sbjct: 803 IQ-PIKDGLYPPHIAHADEELKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 855 >gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 934 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + Y Sbjct: 57 ELTGIDESMVKQAPL-FQDVAPMVGELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] Length = 250 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G DV DR +FA +R E I+S E + E+ I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E RI FF + I +++ FD R Sbjct: 65 DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + D ++ + + L+ LA + H H A DV Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163 Query: 185 LALVWLIREKKPK 197 + + + ++ Sbjct: 164 VKVFKHLTKRFRT 176 >gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 711 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 61/206 (29%), Gaps = 27/206 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G + D+ AGVR+ + S E F E++ G Sbjct: 517 TFVVFDTETTGLHPSQGDQIVSIAGVRI-VNGRIL-SGESFNRIVNPGRSIPAESIRYHG 574 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + + ++ +N FD + R Sbjct: 575 ITDEMVIDKP-PAGVVLPQFRSYVAD---AVLVAHNAAFDLKFLRMREKEMG-------- 622 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R I D L D+ GIE + H A D Sbjct: 623 ------------VRFDSPVLDTMILSNFLDGPEAGHSLDDICERYGIEITDRHTALGDSM 670 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 T A++ E + D K Sbjct: 671 VTAAVLLRQIEALEGRGIHTLDQAVK 696 >gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1] gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 228 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 59/231 (25%), Gaps = 30/231 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + YD ET G + DR + A + ES + + EA I Sbjct: 1 MTTLIFYDTETTGTQIDKDRIIEIAAY----NHKTKESFVTY---VNPEIPIPEEASKIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E + F ++ +NN FD R+ Sbjct: 54 GITTSTVISAPK-FPEAYKHFCDFCGN-EAVLVAHNNDSFDFPLLEKECRRHALPPL--- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D ++ + PD LQ L G AH A DV Sbjct: 109 ------SLKTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMF 230 + + + + PL V + Sbjct: 153 ITLHNVFSALIGDLSAEQVLALMEESYHPKTFKMPFGKYKGKPLSEVPPSY 203 >gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 250 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G DV DR +FA +R E I+S E + E+ I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E RI FF + I +++ FD R Sbjct: 65 DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + D ++ + + L+ LA + H H A DV Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163 Query: 185 LALVWLIREKKPK 197 + + + ++ Sbjct: 164 VKVFKHLTKRFRT 176 >gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72] gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72] Length = 734 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 27/186 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + + D Q VRV + + +E F E+ + G Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRV-LNGKPL-RSEAFEQLIDPCRPLPEESARVHG 600 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT V+EA H F +T ++ +N + Sbjct: 601 ITADMLAGQPVIEA-VLPSFHAF--AADTVLVAHNAAFDMRFLQLKE------------- 644 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L +R + S +L+ +A GI V H A D Sbjct: 645 --------DLTGLRFDQPVLDTLLLSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAM 696 Query: 183 ATLALV 188 T + Sbjct: 697 VTAEVF 702 >gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sp. AT1b] gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp. AT1b] Length = 936 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 28/204 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +VI D ET G V D +FA V V ++ E IE P + Sbjct: 1 MDTYVIVDLETTGHSVKSGDELIEFAAVVV-QEGEVIERYSTL---IRPSRPIPPFITQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I+ + E I + + + + +N+ FD + + Y +++ Sbjct: 57 TTISDEDVSDAPTFE----DVIPDIWKMLDGRVFVAHNVAFDLTFLNESLEQAGYLAFQ- 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R +Y S L+ L+ + H +AH A +D Sbjct: 112 -----GRAIDTVELARILYPTLE-------------SHALEALSDTFDLVHTDAHRALSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + ++ L Sbjct: 154 AEATAELFIRMLDRLRDLPMVTLK 177 >gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS] gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS] gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 630 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 28/203 (13%) Query: 4 HFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D + V+V R E + P+ V + Sbjct: 29 TFVVVDLETTGGRATGERPDAITEIGAVKV-RGGEVLGELATL---VDPGRAIPPQIVSL 84 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F ++ +N FD + R + Sbjct: 85 TGITTAMVCAAPRIE----SVLPAFLEFARGSVLVAHNAGFDIGFLRAAAEQCAL----- 135 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R +L ++ D A S +L LA + H A D Sbjct: 136 ----TWPRPPVLCTVKLARRVL--------TRDEAPSVRLSALAQLFRAKTTPTHRALDD 183 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 AT+ ++ + E+ + Y Sbjct: 184 ARATVDVLHGLIERIGNQGVHTY 206 >gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] Length = 928 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 32/246 (13%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + D R QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASRDDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVRDAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMNRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ G+ H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T L+ L+ EK L + + + +++ P + R+N L Sbjct: 156 AEVTADLLLLLLEKLENLPLPVI----RQMVTVSGSLKSCLPELLFDIEMKKERANKPLD 211 Query: 241 APVAWH 246 H Sbjct: 212 TNFIEH 217 >gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] Length = 246 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 26/184 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G + D F +RV E++ E F P +TGIT Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAIRVI--GEQVIENETFHMIVNSGAPVSPFIAELTGIT 119 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q +H F + ++ + D + ++ Sbjct: 120 QQMVDAAPP----LMEGLHDFMAFIGGRVLVAHAAAHDRGFLNAALWKT----------- 164 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +R + + + L +L ++GI H A +D T Sbjct: 165 --------SKVRLTHRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGRHHALSDARMT 216 Query: 185 LALV 188 L Sbjct: 217 ARLW 220 >gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] Length = 1483 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 28/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+++D ET G D + V+V E ++ F +T I+ Sbjct: 459 FIVFDIETTGFSAKNDAITEIGAVKV-VNGEIVDRFSTF---VNPKRPIPFRIEELTHIS 514 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V+E E + F I +N FD + R R + Sbjct: 515 DAMVVNAPVIE-EILPKFLDF---CEDYTIVAHNAGFDTGFIRENAKRINAEYNP----- 565 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D + PD + FKL + A I H A D AT Sbjct: 566 -----SIIDTVAMARLLLPDLNR----------FKLDTVCKALNISLEGHHRAVNDAEAT 610 Query: 185 LALV 188 + Sbjct: 611 AEIW 614 >gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10] gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10] Length = 246 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 26/184 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G + D F +RV E++ E F P +TGIT Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAIRVI--GEQVIENETFHMIVNSGAPVSPFIAELTGIT 119 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q +H F + ++ + D + ++ Sbjct: 120 QQMVDAAPP----LMEGLHDFMAFIGGRVLVAHAAAHDRGFLNAALWKT----------- 164 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +R + + + L +L ++GI H A +D T Sbjct: 165 --------SKVRLTHRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGRHHALSDARMT 216 Query: 185 LALV 188 L Sbjct: 217 ARLW 220 >gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] Length = 930 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G DR Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDRITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + + Y Sbjct: 57 ELTGIDENLVKQAPL-FCDVAPMVAELLQ---GAYFVAHNVHFDWNFLKEELKQAGY--- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 G +D + A S+KL+DLA + +EH H A Sbjct: 110 ------GEVNCPKIDTVELAQILL----------PTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D T L + KL Sbjct: 154 SDALVTAELFLQFLNQLEKLPLVTLQ 179 >gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] Length = 933 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 237 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 63/234 (26%), Gaps = 34/234 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + + YD ET G + DR + A D F + EA Sbjct: 6 MDVLIFYDTETTGTQIERDRIIEIAAYNSVTDE---------SFLTYVNPEIPIPDEASK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GIT L E +F ++ ++ +NN FD R+ + Sbjct: 57 IHGITTDAVLSAPK-FPEAYEGFRKFCGE-DSILVAHNNDGFDFPLLGKECRRHSLEPL- 113 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 N D L + LQ L G AH A Sbjct: 114 -----TNRTIDSLKWAQKYR-------------PDLPKHNLQYLRQVYGFAENQAHRALD 155 Query: 180 DVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKL-IDIQNMTPLVHVSGMFG 231 DV + + P L ++ K+ PLV + + Sbjct: 156 DVVILHKVFTSLIGDLPPQQVLDLLQQSYHPKVFKMPFGKYKGQPLVDIPKSYF 209 >gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1] Length = 403 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 54/201 (26%), Gaps = 25/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D + V V R E I + +TGI Sbjct: 24 TFCVVDLETTGGSHRADAITEVGAVSV-RGGESIGELSTL---VDPGTRVPADVTRLTGI 79 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ +N FD + R R+ Sbjct: 80 TNGMLAGAP-PLGAVLPPVLDLLR---GSVLVAHNAPFDTGFLRAACERHERPWPSPP-- 133 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +L R A P S +L LA G H A D A Sbjct: 134 -------VLCTARLARAVLPRSEC--------PSVRLGALAAHFGCRTTPDHRALTDARA 178 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ L + Sbjct: 179 TVEVLHHLLERIGNLGVQSLE 199 >gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463] Length = 317 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 25/195 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ P ++ +P + GI Sbjct: 32 NYTMLDVETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ +G+ + + +F + IIGYN NF ++ Sbjct: 90 TEEQLTNEGIPAEQAIKEFREFI--GDDTIIGYNVNFDL----------NFLYDLSQKYN 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + P +L D GI V H AD Sbjct: 138 LPVLNNDYVDVLRLARVYYPRQHN-----------RLIDCMQRAGIAQVEQHHGLADSLD 186 Query: 184 TLALVWLIREKKPKL 198 T+ + + + Sbjct: 187 TIKVYNDFNQHFTED 201 >gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] Length = 946 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G V R Q V V + + I E K + +TGI Sbjct: 14 YAVVDLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVVPLTIEQLTGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + + + I +N+ FD + F R Sbjct: 70 KNNDVKGAPLFE-DVAPTLKSLLDD---TIFVAHNVNFDFPFLNAEFERAG------EAP 119 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + + A SF+L+DL I+H H A +D A Sbjct: 120 LTIPAIDTVTLSQI-------------LMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVA 166 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ + ++ L Sbjct: 167 TAHLLIELLKRLADLPTITLQ 187 >gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] Length = 236 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 78/289 (26%), Gaps = 53/289 (18%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V D ET G + + DR + V+V R E + + Sbjct: 1 MME-YVALDLETTGLEPSKDRIIEIGAVKV-RNKEVVGEYGTL---INPQMEIPDRITEL 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + ++ + + + +N+ FD + ++ Sbjct: 56 TGISNDMVQGKPL----IAQALGELLDFCEELPLLGHNLMFDYSFVKHQAVNAGM----- 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + RA S LQ+L + I +AH A D Sbjct: 107 --VFEKKGMDTLKLARA-------------LLPELPSRSLQNLRMHYEIPQKDAHRALED 151 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T YL R + + + P + V + Sbjct: 152 ARTT----------------YLLYERLREEFEEK------QPKLFVPNALIYKVKKQGPV 189 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289 A RY +I + L + ++ + +V Sbjct: 190 T--AAQKRYLQDLIKYHRIELNVEIDSLTKNEASREIDKILSTYGKIVR 236 >gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] Length = 469 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D Q +RV R F + + GI Sbjct: 276 SYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQ--FGTLVDPGTPIPAASTKVHGI 333 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +R H+F + +I +N FD + R R + Sbjct: 334 SDAMVQGAPDI-GQAARAFHRF---ASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQ---- 385 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 +LD + S L L + A H A D Sbjct: 386 ------PVLDTVLLSAVLFGASQ----------SHTLDALCERLEVTIPPALRHTAMGDA 429 Query: 182 YATLALVWLI 191 AT + + Sbjct: 430 QATAEVFCKM 439 >gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] Length = 313 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 28/193 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D ET G + + V+V + ++ + +T Sbjct: 139 MQPYVVVDIETTGGRATSHKITEIGMVKV-INGQVVDEYQTL---LNPKRRIPRNITALT 194 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + AE + + QF C+ +N+ FD + + F R Sbjct: 195 GIDDVMVSNAP-IFAEVADEVAQFTK---GCVFVAHNVNFDYGFIKQEFTRLER------ 244 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 A + G S+ L +L GIE H A +D Sbjct: 245 --------------HFSRAKLCTVREMRKARPGLASYSLANLTRHFGIEMSRHHRAMSDA 290 Query: 182 YATLALVWLIREK 194 A L+ +I E Sbjct: 291 IAANELLTIINEH 303 >gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] Length = 930 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F + P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQVAAVVV-EDGEILEIFSSF---VNPEREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + R + Y Sbjct: 57 ELTGIDEDLVKQAPL-FCDVAPMIVELLQ---GAYFVAHNVHFDWNFLREELKQAGY--- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 G +D + A S+KL+DLA + +EH H A Sbjct: 110 ------GEVNCQKIDTVELAQILL----------PTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D T L + +L Sbjct: 154 SDALVTAELFLQFLNQLEQLPLVTLQ 179 >gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 735 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 60/202 (29%), Gaps = 27/202 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + A D Q VR+ + E F + PE + I G Sbjct: 544 TYTVFDTETTGMEPAAGDEIIQIGAVRI-VNGRLL-RNENFDQLVDPERFIRPEGIRIHG 601 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +E +H F N ++ +N FD + + R Sbjct: 602 ISDDMVRGQPNIEV-VLPALHDF---CNDTVLVAHNAAFDMRFLQLKEERTG-------- 649 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + S +L +A GI + H+A D Sbjct: 650 ------------VAFSQPVLDTLLLSGVLHPNQESHQLDSIAERLGIGIEDRHNALGDAC 697 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT + + ++ Sbjct: 698 ATAEVFLKMLPLLAQMGITTLR 719 >gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 240 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 27/216 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + G+ + + + +F D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFIN--PGDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + +I FF +N FD + R Sbjct: 62 EFLKDK-QPFGEVAEQILTFFGDAK---WIAHNATFDMGFINAELARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 113 ERVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + R+ R + +++ Sbjct: 159 LAEVYIEMIGGRQAALGLGMVGRSNQAARGDMGMED 194 >gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 208 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 63/207 (30%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V V R + + + P + Sbjct: 1 METIAVIDFETTGISPGQGARATEIAAVLV-RGGQIVGRYQSLM---NSGAWVPPFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + R E R + F + C + +N FD + + R D Sbjct: 57 TGISNRMLERAPPAER-VMREVLDFTA---GCPLVAHNAAFDRGFWQAERARAGCDEDA- 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 +AF+ + A + +L LA + + AH A A Sbjct: 112 -----------------AHAFACTLLLARRLYPEAPNHRLGTLAKLHALPDGGRAHRALA 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYR 206 D L+ +++ F R Sbjct: 155 DAETAAHLLLRMQDDLRVRFAAELAER 181 >gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] Length = 231 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V +D ET G D + + ++V R + E F P + Sbjct: 1 MLKSYVCFDLETTGLDPLYNEIIEIGALKV-RDGKVAERFMEF---IHPQEEISPMITNL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +A I F ++ +N+ FD + ++ Sbjct: 57 TGITNEMVANARPADA----VISDFLEFCEDDVLIGHNVGFDYSFMKSGASNLGL----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D + + P L IE+ AH A D Sbjct: 108 --TFEKFGIDTFKIAQRTLKSLPSKSL-------------SSLCEYYQIENKAAHRAYYD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L + L+ Sbjct: 153 ALATAKLYQTLAHYFENEDPSLFK 176 >gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] Length = 930 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G DR Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDRITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + + + +N+ FD + + + Y Sbjct: 57 ELTGIDENLVKQAPL-FCDVAPMVAELLQ---GAYFIAHNVHFDWNFLKEELKQAGY--- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 G +D + A S+KL+DLA + +EH H A Sbjct: 110 ------GEVNCPKIDTVELAQILL----------PTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D T L + KL Sbjct: 154 SDALVTAELFLQFLNQLEKLPLVTLQ 179 >gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 208 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + + V+ D+ET G DR + V V + ++ + + Sbjct: 6 LADSVVVLDFETTGLSPQYGDRAIEIGAVLV-EEGRIVDRFQKLM---NPGFRISSFIEA 61 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT + + E E + +F + N I +N FD + R Sbjct: 62 YTGITNEMLKGEACCE-EVMAQFSEFIAGHN---IVAHNASFDKRFLDFELKRANRS--- 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178 + + + KLQ L G+ + H A Sbjct: 115 -----------------YEGVCCCSLLVSRRIYQDSPNHKLQTLVSHAGVPTIGSFHRAL 157 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD T L + ++ K + Sbjct: 158 ADAEMTAHLWLAMIDRIRKQY 178 >gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] Length = 1623 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G ++ + V+V + E +++ F + +T I Sbjct: 567 YVVFDIETTGLSKKHNKIIEIGAVKV-KDGEVVDTFSEF---INPGVPIPYQIEQLTSIN 622 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F I+ +N FD + + Sbjct: 623 DDMVKDAPM--YDVI--VPRFVEFCGDDIVVAHNASFDTGFVKKNAEELG---------- 668 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +R F L + + + + H A D AT Sbjct: 669 ----------LRFDNTVLDTMTLSHILLPELGKFTLDRVCKELKVVNAHHHRAIDDAEAT 718 Query: 185 LALVWLIREK 194 + + + + Sbjct: 719 SKVFFKLLDM 728 >gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 466 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 30/208 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G+ + +R +F VR+ + E I+ + P +TGI Sbjct: 11 IIDVETTGKGINGNRITEFCAVRL-KDGEIIDKFTSL---VNPEQYIPPFITNLTGIDDA 66 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E E ++R+ + I +N+ FD + F R R Sbjct: 67 MVEDAPLFE-EIAQRVLEITE---GAIFVAHNVNFDFNVIKGEFKRLGVSFVRKK----- 117 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L +R P+ S+ L +L + GI N H A+ D AT+ Sbjct: 118 -----LCTVRLSRKLIPNLF----------SYSLGNLCASIGIPLNNRHRAEGDTDATVI 162 Query: 187 LVWLIREKKP--KLFEYLYDYRNKNQLR 212 L + + K+ + R+K Sbjct: 163 LFKRLLDLDEGKKVMNAFLNVRSKEATL 190 >gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] Length = 608 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 55/188 (29%), Gaps = 24/188 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI D ET G + V+V R E + P+ +TGI Sbjct: 27 TFVIVDLETAGGRPGAQGITEIGAVKV-RGGEVLGEFATL---VDPGCAIPPQIQRLTGI 82 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T A +F ++ +N FD + Sbjct: 83 TTAMVHNAPK-LASVLPAFFEFL--GPDAVLVAHNAPFDVGFLTAAARDLEVPWPA---- 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D + + RA+ D + +L LA G H A AD A Sbjct: 136 --PAVVDTVKLARALVP-----------RDEVRNHRLGTLAAHFGASVNPNHRALADAQA 182 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 183 TVDVLHAL 190 >gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] Length = 934 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVEMAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] Length = 1447 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 142/489 (29%), Gaps = 64/489 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D +F G V + I+S ++F V +TGI Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIV-KDRTCIKSLQLF---IKPPVPIPAHIVELTGI 453 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + AE + +I F I+ +N FD + + R Sbjct: 454 SEEHVRNA-KSFAECADQILDFI---GDSILVAHNADFDYNFLNSELVRIGRKPL----- 504 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D LD+ R++ ++L +A + GI + AH A D Sbjct: 505 -DNPVIDTLDLARSMQ--------------DRKGYRLGQIARSYGIRYDEDVAHRADYDA 549 Query: 182 YATL-----------ALVWLIREKKPKLFEYLYDYRNK------NQLRKLIDIQNMTPLV 224 + L + + R K L ++ + L Sbjct: 550 EVLANTYMNMLNDLKHIQNLAALQDMQNARSFTKVRAKHVTILVKNAAGLKELFELVTLS 609 Query: 225 HVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284 H + + +S ++A PR I + S L +F Sbjct: 610 HTKYLSYSDKSTGNIVA----EPRILREEIEKRRRNG---NLLIGSSCLNGEVFDIAQTR 662 Query: 285 KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKA 343 +K + L P+ + R E L + R A Sbjct: 663 GEEE--LLKVMQFYDYIELQPLGNYRHLVERDSIESMDRLKEILRSIVEAAKKCGKRIIA 720 Query: 344 IYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELF 400 + Y ++ + +Y A + I + +L + L E Sbjct: 721 SGDVHYAHPNEKMIRDIYISSQAIGGIRHPLYIYNQEKRRKFKSPDQHLLTTKEMLKEFA 780 Query: 401 FRYRARNFPHTLSE----KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGL 456 + + + ++ + + ++ K L IE KL + E + L Sbjct: 781 WLGEKEAYTYVVTNTNAIADMIEVVKPVKDRLYPPDIEGSDQKLIDICYENAHKKYGPNL 840 Query: 457 INALYEYLQ 465 + + E L+ Sbjct: 841 PDIVEERLK 849 >gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens GS-15] gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens GS-15] Length = 218 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 57/203 (28%), Gaps = 32/203 (15%) Query: 2 TNHF--VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 F VI D+ET G DR + V V ++ + Sbjct: 1 MGKFTAVILDFETTGLSPGYGDRAIEIGAVLVRNN-RIVDRFQSLM---NPGKRVSGFIE 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 TGIT + + E + R F + N + +N FD + R Sbjct: 57 EYTGITNEMLAKAPPAE-QVMERFASFIAGHN---LVAHNASFDRRFLDAELSRIGR--- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDA 177 D M A + A + +L+ L ++ H A Sbjct: 110 -------RRTGDFACSMLAARRIYTN----------APNHRLETLVSHLSLQTDGVFHRA 152 Query: 178 KADVYATLALVWLIREKKPKLFE 200 AD T L + + + + Sbjct: 153 LADAEMTAQLWTAMIGELKETYR 175 >gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar chinensis CT-43] Length = 934 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3 bacterium] Length = 965 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 26/202 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D ET G D +DR + VRV ++ E F + V +T Sbjct: 25 PRTFVGLDLETTGVDSRVDRIIEVGAVRV-VDGRVADTFESF---VNPGCPIPSDIVHLT 80 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ ++ E RI +F + I+ ++ + R Sbjct: 81 GISDADVAGAPTID-EVLPRIIEFI--GGSPIVAHHAPFDTGFLDEAAGGRPGL------ 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R + D + A + +L A I +H A D Sbjct: 132 ---LVGRGGVFDTLPLTRALL----------PRLPNHRLATAARFFDIPTGRSHRATDDA 178 Query: 182 YATLALVWLIREKKPKLFEYLY 203 A L + ++ + Sbjct: 179 RAVSDLFLALLGVLDQIGATVL 200 >gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] Length = 930 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 71/248 (28%), Gaps = 28/248 (11%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D ET G D+ Q A V + + E + + + Sbjct: 3 KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPFFIEQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + + Q + +NI FD + + + Sbjct: 59 TGITNSMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELNEAGFRLP-- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R +Y +KL +L+ ++H N H A +D Sbjct: 113 ----DCEVLDTVELSRIVYPGFEG-------------YKLTELSEELQLKHENPHRADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + I +K +L + + D+ + + Sbjct: 156 AEVTGFIFLKIIDKLQRLPLPTLKQLRRLSQHFISDLTFLLDTFIFEREKAEAPGYVKFA 215 Query: 241 APVAWHPR 248 + P Sbjct: 216 SFSIREPE 223 >gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 208 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 59/199 (29%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G DR + V + ++ + + P T Sbjct: 7 DSVVVLDFETTGLSPQYGDRAIEIGAVLL-ENGVIVDRFQRLM---NPGFRISPFIESYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + E E F + N I +N FD + R Sbjct: 63 GITNEMLKVEPPCE-EVMAGFSDFIAGHN---IVAHNASFDRRFLDFELKRARR------ 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 D + D A + KLQ L GI + H A AD Sbjct: 113 ----AYEGDCCCSLLLSRRIYQD----------APNHKLQTLVNHAGIPKVGSFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLF 199 T L + ++ + + Sbjct: 159 AEMTAHLWLSMIDRIRQHY 177 >gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855] Length = 563 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 53/191 (27%), Gaps = 27/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G DR + V+V R ++ + +TGI Sbjct: 7 TFVVTDLETTGTTPDDDRIMEIGAVKV-RDGSVVDRFQQL---VNPQQSVPGRITKMTGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E F I+ +N+ FD + R ++ Sbjct: 63 TTGMVFEAP-PADEVLPDYRAFLGDG---ILVAHNVSFDGSFLDAELQRMGDETLPNE-- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L +R P S L LA I+ H A D A Sbjct: 117 -------TLCTVRLARRLLPGLD----------SKGLSRLAQFYDIDVEGRHRALGDAEA 159 Query: 184 TLALVWLIREK 194 T ++ + Sbjct: 160 TSVVLRRFVSQ 170 >gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] Length = 318 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + V+V R + ++ P ++ +P + GI Sbjct: 32 NYTMLDIETTGLSPYRDRITELGAVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + +G+ + +F + I GYN NF + Sbjct: 90 TEEQIINEGIPAEQAITEFREFI--GDDVIAGYNINFDL----------NFLYDLSQKFK 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R A+ +L D GI V H AD Sbjct: 138 LPILNNDYVDVLRLARAYY----------PRERHNRLIDCMQRAGIAKVEQHHGLADSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + E + KN Sbjct: 188 TIKVYNDFSEHFTDELLENARNKIKN 213 >gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae TW-183] Length = 232 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 63/234 (26%), Gaps = 34/234 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + + YD ET G + DR + A D F + EA Sbjct: 1 MDVLIFYDTETTGTQIERDRIIEIAAYNSVTDE---------SFLTYVNPEIPIPDEASK 51 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GIT L E +F ++ ++ +NN FD R+ + Sbjct: 52 IHGITTDAVLSAPK-FPEAYEGFRKFCGE-DSILVAHNNDGFDFPLLGKECRRHSLEPL- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 N D L + LQ L G AH A Sbjct: 109 -----TNRTIDSLKWAQKYR-------------PDLPKHNLQYLRQVYGFAENQAHRALD 150 Query: 180 DVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKL-IDIQNMTPLVHVSGMFG 231 DV + + P L ++ K+ PLV + + Sbjct: 151 DVVILHKVFTSLIGDLPPQQVLDLLQQSYHPKVFKMPFGKYKGQPLVDIPKSYF 204 >gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 934 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] Length = 934 Score = 99 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] Length = 934 Score = 99.5 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 250 Score = 99.5 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 25/193 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G DV DR +FA +R E I+S E + E+ I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EVIDSVEFL---IHPERAVSAESQKIHKIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E I FF + I +++ FD R Sbjct: 65 DAMLKDKPK-FSEVFSTIKGFFKERD--YIVGHHVGFDLQVLSQESERLG---------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + D ++ + + L+ LA + H H A DV Sbjct: 112 --------ETLLPKQHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163 Query: 185 LALVWLIREKKPK 197 + + + ++ Sbjct: 164 VKVFKHLTKRFRT 176 >gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 240 Score = 99.5 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 27/216 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + G+ + + + +F D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFIN--PGDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + AE + +I FF +N FD + F R Sbjct: 62 EFLKDK-QPFAEVAEQILTFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 113 ERVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + ++ R + +++ Sbjct: 159 LAEVYIEMIGGRQAALGLGMVGKSNQAARGEMGMED 194 >gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 378 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 53/189 (28%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 16 LVFVDLETTGGSPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + + F + + +N FD + R F R + Sbjct: 71 DEMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A T L L +G+ H A AD Sbjct: 122 -----DVLCTVRLSRALF----------PRETRHGLDALIERHGLVPAARHRALADADLL 166 Query: 185 LALVWLIRE 193 L L+ + Sbjct: 167 LQFWRLLHD 175 >gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 719 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 56/183 (30%), Gaps = 25/183 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G DV DR Q VR+ +I+ T VF A I G+ Sbjct: 21 VVLDTETTGLDVRHDRIVQIGAVRM--HGAEIDETAVFEVTVDPGIPIPEVASRIHGLAD 78 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A + F ++ ++I FD R+ R+ + Sbjct: 79 ADVAGKPG-LAAVMPDLVAFI---GDAVVVGHSIHFDMAVLRHEAERHGFVWKEPR---- 130 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 LDV + + L LAL G+ H A D AT Sbjct: 131 -----ALDVALMAAGLDRELVDT----------SLDSLALGLGVTITGRHTALGDALATA 175 Query: 186 ALV 188 + Sbjct: 176 RVY 178 >gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus B4264] gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] Length = 563 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 53/191 (27%), Gaps = 27/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G DR + V+V R ++ + +TGI Sbjct: 7 TFVVTDLETTGTTPDDDRIMEIGAVKV-RDGAVVDRFQQL---VNPQQSVPGRITKMTGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E F I+ +N+ FD + R ++ Sbjct: 63 TTGMVFEAP-PADEVLPDYRAFLGDG---ILVAHNVSFDGSFLDAELQRMGDETLPNE-- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L +R P S L LA I+ H A D A Sbjct: 117 -------TLCTVRLARRLLPGLD----------SKGLSRLAQFYDIDVEGRHRALGDAEA 159 Query: 184 TLALVWLIREK 194 T ++ + Sbjct: 160 TSVVLRRFVSQ 170 >gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] Length = 315 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 83/267 (31%), Gaps = 32/267 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERPIPNRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPFFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + + NK L + + + + ++ + + + + Sbjct: 162 AAVYQNCAAIEEEGKRKV----NKEVLDETVVYEAVREILVRNKRNVEWLRCMNVGSYLD 217 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSV 271 Y + + + L+ Sbjct: 218 VKAFYPVMRLKVKGRKKYVLTEILEDD 244 >gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus S26/3] Length = 249 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 26/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G DV DR +FA +R I+S E D + E+ I I+ Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAIRFTFD-SVIDSMETL---INPDRVISAESQRIHHIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F + I +++ FD R ++ + Sbjct: 65 DAMLKDQPRI-AEVFPKIKSFLKEGD--YIVGHSVGFDLQVLSQEAERIG-----ETFLS 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + + + + L+ LA+ + + H A DV Sbjct: 117 KYYIIDTLRLAK--------------EYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162 Query: 185 LALVWLI 191 +++ Sbjct: 163 ISIFKHF 169 >gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Anoxybacillus flavithermus WK1] gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase [Anoxybacillus flavithermus WK1] Length = 880 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 28/211 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + FV+ D ET G DR Q V ++ + + F + Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGD-KVKKRFSTF---VQPERDIPLFIQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI + + + +N++FD + + F R+ Sbjct: 57 LTGIDHAMVHDAP-PFQHIAAMLVE---QWEGAYFVAHNVQFDWAFLQEEFIRSGI---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R +S+KL LA A H H A Sbjct: 109 --QPPTCRLLDTVELAR-------------FLMPTQSSYKLNHLAEALSFAHDRPHQADY 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D AT L+ + K +L ++ Sbjct: 154 DAEATAQLLLFLLHKLSRLPLVTLKQLRRHS 184 >gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 460 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 57/374 (15%), Positives = 111/374 (29%), Gaps = 35/374 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ I D ET G + + A R D + + ++ + P V +TGI Sbjct: 2 NYAILDIETTGGKYNEEGITEIAIYRFDGE-KVVDQFCSL---VNPERPIQPFVVNLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E ++RI + CI+ +N +FD+ F R YD Sbjct: 58 NSDMLKNAPK-FYEVAKRIVEITKD---CILVAHNAQFDNRILTTEFDRLGYD------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + PD S+ L L + GI + H A+ D A Sbjct: 107 ---FDLETLCTVELSKKLIPDM----------PSYSLGKLVRSLGIPITDRHRAQGDAKA 153 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR-----KLIDIQNMTPLVHVSGMFGASRSNTA 238 T+ L ++ K + + + K + KL+D+ P + N Sbjct: 154 TVTLFKMLLLKDTE--KEIIKAAVKKDPKRQIDTKLLDLIKQAPSETGVYYMHDTHGNIL 211 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 I + + + + S+ + K L+ + + N Sbjct: 212 YIGKSKNIKKRLTQHFTNDNRKSKEMQLKVTSISIEKTGSELLALLEENDQIKRHKPRFN 271 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + +Y + G + + + + T + A N ++ Sbjct: 272 RALKRSIFNYQLGSFVDEDGYINLKIEKADARKKAITTFSNYQSAKNNVASYIEKFNLCQ 331 Query: 359 QLYDGFFADVDRQI 372 +L + Sbjct: 332 RLSGFEKSTGACFN 345 >gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] Length = 216 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 25/219 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F +D ET G D + G++ D + I + + + IT Sbjct: 15 FTAFDTETTGLKQEEDSVVEIGGIKFDHRG-VIARFNIL---INPGKPMPEDVTAVNNIT 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +F ++ +N FD + N R Sbjct: 71 DAMLADKP-PFNAVIPDFLRFIKK---TVLVAHNAPFDIGFINNELKRCKKPPL------ 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D L + + ++ ++LQ+LAL GI + AH A+ D Sbjct: 121 TNKVIDTLVLAQEVFPGLGKHQ-----------YRLQNLALQFGITALEAHRAEDDSRVC 169 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 + + E K E L N + I + P+ Sbjct: 170 MEFFTIAVEHFFKNNEKLVKQIKANTNIEEILREAPPPV 208 >gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] Length = 934 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEV 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFIQFLNEIEKLPLVTLQ 179 >gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 303 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 28/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++V+ D+ET G + D+ Q A V+ R E ++ + + +TGI Sbjct: 12 NYVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E E F +I +N FD + ++ Sbjct: 68 TNYRVSDAPTIE-EVLPLFLAFLHKN---VIVAHNASFDMRFLKSNVNMLGLPEP----- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D + + + A + KL+ L GI +H+A D Sbjct: 119 -KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCIT 163 Query: 184 TLALVWLI 191 A+ Sbjct: 164 CAAVYQKC 171 >gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] Length = 235 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 28/212 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V +D ET G D+ + V++ R + C + + +T Sbjct: 1 MKDYVAFDLETTGLSPDSDQIIEIGAVKI-RDGKISGKYN---CIIHPEIEVSDFIINLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + G+ E + +F + +N+ FD + + + Sbjct: 57 GISRDMLRK-GIPLKE---GVEEFLEFSGDLPVLGHNVMFDYKFMKMAAA-------SFK 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + D L V R G + KL+ L + AH A D Sbjct: 106 YPFEKTGVDTLKVAR-------------KLLTGLENKKLETLCAHYHYVNQAAHRAYDDA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 AT + ++++ P E + + +++K Sbjct: 153 LATAVVFEQMKKEFPTEEEIFQPQQLQFKVKK 184 >gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 190 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 26/185 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ D ET G DR + V+V R + ++ +TGI Sbjct: 12 NYISLDLETTGFSAQNDRITEIGAVKV-RDGKIVDRFTQL---VNPGRRVSARITELTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + V+E + F + +N +FD + R F D Sbjct: 68 SNEMLEDQPVIE----DILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSD------- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D M P +L DL GI V H A +D Sbjct: 117 STRFSVRPIDTMHIDRLLFPS-----------ERHRLVDLIQRYGIGDVEEHRALSDATQ 165 Query: 184 TLALV 188 T + Sbjct: 166 TYQCL 170 >gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 282 Score = 99.5 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 26/192 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D E G +V DR Q A ++ + + EA+ + GI Sbjct: 9 LCFFDIEATGLNVVRDRIVQIAIIKYFKDGR---EPQELSLMINPGIPISLEAILVHGIQ 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + +++I F N + GYN+ RFD F R + + Sbjct: 66 PKDVANKP-TFQQLAQKIWDFI--GNADLAGYNSNRFDIPMLMEEFARVGMEFDVTKRRS 122 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +DV R Y L EH +AHDA ADV AT Sbjct: 123 -------IDVQRIFY-------------KMEPRTLKAALKFYCEKEHEDAHDAMADVRAT 162 Query: 185 LALVWLIREKKP 196 + + +K Sbjct: 163 IDVFKGQLDKYE 174 >gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] Length = 412 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 59/206 (28%), Gaps = 27/206 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G + D+ AGVR+ + S E F E++ G Sbjct: 218 TFVVFDTETTGLHPSQGDQIVSIAGVRI-VNGRIL-SGESFNRIVNPGRPIPAESIRYHG 275 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + ++ +N FD + R Sbjct: 276 ITDDMVVDKP-PAGVVLPQFRSYVAD---AVLVAHNAAFDLKFLRMREKDMG-------- 323 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R I D L D+ GIE + H A D Sbjct: 324 ------------IRFDIPVLDTMILSNFLDGPDAGHSLDDICDRYGIEITDRHTALGDAM 371 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 T A++ E D K Sbjct: 372 VTAAVLLRQIEALEGRGIQTLDQAVK 397 >gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 317 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 25/195 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ P ++ +P + GI Sbjct: 32 NYTMLDVETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ +G+ + + +F + IIGYN NF ++ Sbjct: 90 TEEQITNEGIPAEQAIKEFREFI--GDDTIIGYNVNFDL----------NFLYDLSQKYN 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + P +L D GI V H AD Sbjct: 138 LPVLNNDYVDVLRLARVYYPRQHN-----------RLIDCMQRAGIAQVEQHHGLADSLD 186 Query: 184 TLALVWLIREKKPKL 198 T+ + + + Sbjct: 187 TIKVYNDFNQHFTED 201 >gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1454 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + + + V++ + ++ IT IT Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ I +F ++ +N FD + + + + S Sbjct: 483 DEQVANEPKID----EVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSS--- 535 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D ++ PD + + L DL G+ H A D AT Sbjct: 536 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 579 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + +K + N Sbjct: 580 ANMFIIFLDKYKEKGLEYIKDIN 602 >gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 934 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 206 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 24/193 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D ET G D + A V+ ++ + +E+ +TGI Sbjct: 16 TLVSVDIETTGLG-DSDAITELAAVKY-QKGQVVETFSSL---VNPGRQIPVFITRLTGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q E +F P + ++ +N RFD + N + W Sbjct: 71 DNQLVADAP-TLREVLPVFLEFCDFPRSVLLAHNA-RFDTRFLMNACAQLGL-----EWQ 123 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 S +D + A P + +L LA GI++ NAH A AD Y Sbjct: 124 FPAS----IDTVFFSRALLP--------RPQVQNHRLGTLAHHFGIKNPNAHRALADAYT 171 Query: 184 TLALVWLIREKKP 196 L L + + Sbjct: 172 CLELYKCLLDVLH 184 >gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 203 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 53/201 (26%), Gaps = 28/201 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D ET G A DR + VR+D Q + P A + Sbjct: 1 MAGYAVLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTL-VNPRRTVR----ATRV 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT AE + + ++ +N FD + Sbjct: 56 HHITSADVAAAP-TMAELAPGLVDKLRDR---VVVAHNSSFDVGFLTAELRTAGM----- 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + MR F A S +L D A G+ +AH A D Sbjct: 107 --TIPPEPIPSVCTMRQSTRFL-----------HARSRRLVDCCEAAGVSLRDAHSALGD 153 Query: 181 VYATLALVWLIREKKPKLFEY 201 AT L + Sbjct: 154 ARATAELFGHYLRAAGGELPW 174 >gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] Length = 934 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQVGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 469 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 54/186 (29%), Gaps = 28/186 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D ET G + LDR + A +RV Q E + P + Sbjct: 1 MLPCYVLLDLETTGSNPVLDRITEVAVMRV-EQGEVVAKWSRL---LNPGQRIPPFIQQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI E + + ++ +N+RFD + + R D Sbjct: 57 TGIDDAMVAGAPA-FGEVLPELLAVL---DGAVLVAHNVRFDHGFLKQAAAREGVD---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R L +R A L + +G+ H A D Sbjct: 109 ------LRVKTLCTVRLSRKLY----------PQARGHGLDAIMRRHGLHTTARHRAMGD 152 Query: 181 VYATLA 186 V Sbjct: 153 VELLHQ 158 >gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205] gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205] Length = 585 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 24/188 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V E V P +TGI Sbjct: 31 TFVVVDLETTGGAPDGGGITEIGAVKVRGG----EQLGVLATLVNPGVPVPPFVTVLTGI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L A+ +F S ++ +N +D + + + + Sbjct: 87 TQAMLLPAP-SIAQVLPSFLEFLSAD--AVLVAHNAPYDVGFLKAACAAHGHRWP----- 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + R + D + +L LA H A D A Sbjct: 139 -NPRILDTAALARRV-----------LSRDEVPNRRLGTLAAYFRTSTQPTHRALDDAKA 186 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 187 TVDVLHGL 194 >gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2] gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2] Length = 244 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 26/188 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V++D ET G + D F V + + +++ + F+ + + +TGI Sbjct: 60 IVVFDLETTGFYPSNGDEIISFGAVHM--KGLELDESRQFYSLVNPKRRIPRQIIELTGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +H F ++ + D + +R Sbjct: 118 TNEMVQDAP----DLMQVLHDFMEFIGRRLLIAHAAGHDKQFLNAALWR------TSKVS 167 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D + V + + S+ L DL GI H A D Sbjct: 168 LNHRVLDTMLVAK-------------WLEPKRASYALDDLLEDCGIPITERHHALQDSLM 214 Query: 184 TLALVWLI 191 T L Sbjct: 215 TAKLWQQF 222 >gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC 8503] gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7] gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19] gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3] gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC 8503] gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19] gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3] Length = 256 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 27/195 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N V +D ET G ++ DR + + V+V ++ E + PE+ I G Sbjct: 7 NPLVFFDLETTGINIVKDRIVEISYVKVFPNGKE----ETKTRRINPGMPIPPESTAIHG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E ++ + + GYN+ RFD F R D Sbjct: 63 ITDEDVKDCP-TFKEIAKSLATQIE--GCDLAGYNSNRFDIPMLAEEFLRAGVD------ 113 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D+ R + + + ++K NAH A+AD Sbjct: 114 ---------IDLNRRKFIDVQTIFHKMEQRTLSAAYKF-----YCNKSLENAHTAEADTL 159 Query: 183 ATLALVWLIREKKPK 197 AT ++ ++ P Sbjct: 160 ATYEVLKAQLDRYPD 174 >gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 453 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 98/343 (28%), Gaps = 38/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D E ++ + P V +TGI Sbjct: 2 YAILDIETTGGQFNEEGITEIAIYKFDGH-EVVDQFISL---VNPEIPIQPFVVKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++RI + + C+I +N FD R F R YD + Sbjct: 58 NAMLRSAPK-FYEVAKRIIEITTD---CVIVAHNASFDYRILRTEFRRLGYDFEAKT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + S+ L L A GI + H A D AT Sbjct: 111 -------LCTVELAKKL----------IPEQPSYSLGKLVRALGIPMADRHRASGDAMAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK--------LIDIQNMTPLVHVSGMFGASRSN 236 L ++ EK + + + K ++ K +++ V+ + Sbjct: 154 TKLFKMLLEKDVE--KTIVKDFIKLEVEKGISPKFLDIVNQMPAKTGVYYIYKEDGTLIY 211 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 + + I + + L E + + + Sbjct: 212 IGKSQNIKKRVNQHFTGITTKSKRIQAEVFTITYDETGSELIALLKESQEVKVNRPRYNR 271 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339 K + Y +K+ + ++ + +L++ Sbjct: 272 SQKKSVFPVALYAEKDSNGYINLRLEKADGRKKEITSFASLQE 314 >gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis V9] Length = 188 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 26/185 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ D ET G DR + V+V R + ++ +TGI Sbjct: 10 NYISLDLETTGFSAQNDRITEIGAVKV-RDGKIVDRFTQL---VNPGRRVSARITELTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + V+E + F + +N +FD + R F D Sbjct: 66 SNEMLEDQPVIE----DILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSD------- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D M P +L DL GI V H A +D Sbjct: 115 STRFSVRPIDTMHIDRLLFPS-----------ERHRLVDLIQRYGIGDVEEHRALSDATQ 163 Query: 184 TLALV 188 T + Sbjct: 164 TYQCL 168 >gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] Length = 911 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FVI D ET G DR Q V ++ FF + Sbjct: 1 MAMRFVIIDLETTGNVPKKGDRIIQLGMAVV-EDGSIVKRFASFF---NPEQPIPLFIQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I Q + A+ + I +N+ FD + + R + + Sbjct: 57 LTNIDEQTVEGAPL-FADKADEITAMME---GAYFVAHNVDFDLPFLQAELERAGWPPF- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R + A S+KL DLA G+ H H A + Sbjct: 112 -----TGPTIDTVELARIV-------------LPTAESYKLGDLAKQLGLHHDRPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T L + E+ +L + Sbjct: 154 DAEVTAKLFIALLERLGRLPLVTLE 178 >gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus thermodenitrificans NG80-2] gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 911 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FVI D ET G DR Q V ++ FF + Sbjct: 1 MAMRFVIIDLETTGNVPKKGDRIIQLGMAVV-EDGSIVKRFASFF---NPEQPIPLFIQQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I Q + A+ + I +N+ FD + + R + + Sbjct: 57 LTNIDEQTVEGAPL-FADKADEITAMME---GAYFVAHNVDFDLPFLQAELERAGWPPF- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R + A S+KL DLA G+ H H A + Sbjct: 112 -----TGPTIDTVELARIV-------------LPTAESYKLGDLAKQLGLHHDRPHQADS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D T L + E+ +L + Sbjct: 154 DAEVTAKLFIALLERLGRLPLVTLE 178 >gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] Length = 934 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHNQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 928 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKDAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ G+ H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHQADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035] gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035] Length = 688 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 51/188 (27%), Gaps = 29/188 (15%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D Q AG+R+ + E F P + + Sbjct: 493 SFVVFDTETTGLSPRGGDEIVQIAGLRI-VNGRIL-RGESFDMLVNPGRPIPPASTRVHH 550 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + E RR H F ++ +N FD + R Sbjct: 551 ISDDMVQDAPDII-EAGRRFHDF---CQGAVLVAHNAPFDLAFLRLKEKVIGR------- 599 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180 R + D + L L G I H A D Sbjct: 600 -------------RFDNPVLCTVLMSAGLFDHSGQHTLDALCERFGITIPPEARHTAMGD 646 Query: 181 VYATLALV 188 AT + Sbjct: 647 TVATAEVF 654 >gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 215 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ D+ET G DR + V + + + ++ + + T Sbjct: 16 DTVIVLDFETTGLSPTQGDRAIEIGAVML-KDGKVVDRFQQLM---NPGFRISGFIESYT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ E E + F N + +N FD + R Sbjct: 72 GISNAMLADAPSCE-EVMAQFADFIGDYN---LVAHNASFDQRFLDAELKRINC------ 121 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 + F+ + A + KL L I+H H A AD Sbjct: 122 --------------HYLGQFACSMLIARRLYQAAPNHKLGSLVSYKNIQHDGVFHRALAD 167 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T +L + E + ++ Sbjct: 168 SEMTASLWLAMLEDLQQDYQLH 189 >gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] Length = 319 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 61/197 (30%), Gaps = 27/197 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G D D + +R+ + E +ES D + +TGI+ Sbjct: 22 YVVIDLETTGYDPHRDEIIELGALRI-HEGEVVESFSSLT---KPQRDLDDYIIQLTGIS 77 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E S ++ I+ +N+ FD NF Sbjct: 78 NEMLASAP----ELSDVFPRYLDFIGDSIVVGHNVHFDV---------NFIYDTCIKESL 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 DL+D++ PD TS KL ++ I H + D T Sbjct: 125 KLFTNDLVDLLWLSRKLLPDL----------TSHKLCRVSSHFNICVEGMHRSLFDCKTT 174 Query: 185 LALVWLIREKKPKLFEY 201 R + + Sbjct: 175 FECFEKCRILAKERYGQ 191 >gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] Length = 315 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 104/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A + KL+ L GI +H+A D Sbjct: 118 --KVIDTVLLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + L NK L + + + + ++ + + + + Sbjct: 162 AAVYQKCASIEEEAKRKL----NKKALDETVVYEAVKDILVRNKRDIEWIRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS +K N +L Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSLA-----CEPALKSEVGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L +Q D Y Sbjct: 271 SLEDVLKL-ESYILEQYDFVLQALRDYKQSEMNADEKLKEYLN 312 >gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11] gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11] Length = 471 Score = 99.1 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 50/202 (24%), Gaps = 29/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F ++D ET G D Q VRV P + + GI Sbjct: 278 SFTVFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLV--NPGRPIPPASSKVHGI 335 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E H+F +I +N FD + + + Sbjct: 336 SDTMVADAPQPL-EAVADFHEFARES---VIVAHNAPFDLAFLQKYGKVAGLEWP----- 386 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181 +LD + L L I+ H A D Sbjct: 387 -----HPILDTVLLSAVVF----------GSNEVHTLDALCERLCIDIRPEVRHTALGDA 431 Query: 182 YATLA-LVWLIREKKPKLFEYL 202 AT L L+ K FE Sbjct: 432 EATAEALCKLLPILTSKGFETF 453 >gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] Length = 1436 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + R Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P + Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ L + ++ ++ + Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E + + + ++ + + +D + + Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G + + + + L +I Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856 >gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3] Length = 228 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 61/231 (26%), Gaps = 30/231 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + YD ET G + DR + A ES + + EA I Sbjct: 1 MTTLIFYDTETTGTQIDKDRIIEIAAY----NHITKESFVTY---VNPEIPIPEEASKIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E + +F + ++ +NN FD R+ + Sbjct: 54 GITTSTVISAPK-FPEAYKHFCEFCGN-DAVLVAHNNDSFDFPLMEKECRRHALEPL--- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D ++ + PD LQ L G AH A DV Sbjct: 109 ------SLKTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMF 230 + + + + PL V + Sbjct: 153 ITLHNVFSALIGDLSAEQVLALMEESYHPKTFKMPFGKYKGKPLSEVPPSY 203 >gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] Length = 246 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 26/184 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G + D F VRV E++ E F P +TGIT Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAVRVI--GEQVIEQESFHMIVNSGSPVPPFITELTGIT 119 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +H F + ++ + D + ++ Sbjct: 120 QHMVDAAPP----LMEGLHDFMAFVGGRVLVAHAAAHDRGFLNAALWKT----------- 164 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +R + + T + L +L I H A +D T Sbjct: 165 --------SKVRLTHRLLDTMMLAQRLYPEQTDYSLDELLRNCSIPVEGRHHALSDARMT 216 Query: 185 LALV 188 L Sbjct: 217 ARLW 220 >gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 1436 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + R Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P + Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ L + ++ ++ + Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E + + + ++ + + +D + + Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G + + + + L +I Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856 >gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and Excinuclease ABC, C subunit [Thiomonas sp. 3As] Length = 469 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 54/186 (29%), Gaps = 28/186 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D ET G + LDR + A +RV Q E + P + Sbjct: 1 MLPCYVLLDLETTGSNPVLDRITEVAVMRV-EQGEVVAKWSRL---VNPGQRIPPFIQQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI E + + ++ +N+RFD + + R D Sbjct: 57 TGIDDAMVAGAPA-FGEVLPELLAAL---DGAVLVAHNVRFDHGFLKQAAAREGVD---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R L +R A L + +G+ H A D Sbjct: 109 ------LRVKTLCTVRLSRKLY----------PQARGHGLDAIMRRHGLHTTARHRAMGD 152 Query: 181 VYATLA 186 V Sbjct: 153 VELLHQ 158 >gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL N1-067] Length = 928 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKDAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ G+ H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHQADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] Length = 550 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 53/188 (28%), Gaps = 25/188 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D + VR+ R ++ P +TGITP Sbjct: 30 VVVDLETTGLGAGAD-ITEIGAVRI-RDGAVVDEFSSL---VKPSRPIPPFITSLTGITP 84 Query: 66 QKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A ++ ++ ++ +N FD + R R Sbjct: 85 AMVADA-APIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPR---- 139 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R + KL +A G V H A D A Sbjct: 140 --VRIVDTLALAR-----------LALPRPLVRNHKLGTVASYFGTATVPEHRALGDARA 186 Query: 184 TLALVWLI 191 T ++ Sbjct: 187 TAEILLGF 194 >gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Chromobacterium violaceum ATCC 12472] Length = 481 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 29/186 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G ++A DR + V +D E E P +TGI+ + Sbjct: 8 IIDLETTGGNIARDRITEVGMVLIDG-----ERVERLSWLVNPGQPIPPFIENMTGISNE 62 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + ++ +N RFD + +N F R+ Sbjct: 63 MVAGAPPFSAQA----DELLDRLQGRLLLAHNARFDYGFLKNEFRRHGLRFQAR------ 112 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L L +GI+ H A AD A Sbjct: 113 ----ALCTVKLSRRLYPQHFK----------HSLDSLIARHGIDMPERHRALADAEAVYR 158 Query: 187 LVWLIR 192 + + Sbjct: 159 FIRIAE 164 >gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 1436 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + R Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P + Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ L + ++ ++ + Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E + + + ++ + + +D + + Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G + + + + L +I Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856 >gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] Length = 214 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 12/192 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ D ET G + + VRV R + + + Sbjct: 14 MPLDYISLDIETTGLAPRQETITEIGAVRV-RDGRIADRFSML---INPGKHIPSRITAL 69 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ +++ I F + + +NIRFD + Sbjct: 70 TGISDAMVEDAPMID----EAIPAFVDWVDGDRLIGHNIRFDLSFLLKEAMLLDAALATP 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSP----DGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + A D + + +L DL + G+ AH Sbjct: 126 FNAKAVNPAAMTTTAEITRAMLGPDPLDTMMIDRWLFPSERHRLSDLIVRYGVADTEAHR 185 Query: 177 AKADVYATLALV 188 A +D T Sbjct: 186 ALSDATQTYQCF 197 >gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1449 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D+ET G D+ + A +++ + + I+ + P +T I Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKI-QNNQIIDEFQTL---INPQQELTPFIENLTNI 463 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q + + + +F I+ +NI FD + N ++ Sbjct: 464 SNQDLKNQPL----IATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLN------LK 513 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R D F L+ LA I N H A +DV Sbjct: 514 LNLPFIDTLNLARYC------------LDSNLRYFNLKSLAKYFKISFENHHRAMSDVLI 561 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T + + Y Sbjct: 562 TKTIFQQLLNYLLTKNIQFYQ 582 >gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 466 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 30/208 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G+ + +R + VR+ + E ++ + P +TGI Sbjct: 11 VIDVETTGKGINGNRITEICAVRL-KDGEVVDKFTSL---VNPEQYIPPFITNLTGIDDA 66 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E + RI + + I +N+ FD R+ F R + R Sbjct: 67 MVADAPL-FNEIADRI---IEISSGAIFVAHNVTFDFNVLRSEFKRLGHSFTRKK----- 117 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L +R P S+ L +L + GI N H A+ D AT+ Sbjct: 118 -----LCTVRLSRKLIPSLF----------SYSLGNLCASIGIPLNNRHRAEGDTDATVI 162 Query: 187 LVWLI--REKKPKLFEYLYDYRNKNQLR 212 L + ++ K+ + R+K Sbjct: 163 LFKRLLTLDEDGKVMSSFLNVRSKEATL 190 >gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] Length = 1436 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + R Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P + Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ L + ++ ++ + Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E + + + ++ + + +D + + Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G + + + + L +I Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856 >gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 722 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 27/202 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + A D Q R+ +KI E F D L +V I G Sbjct: 531 SYTVFDTETTGLNPAEGDEIIQIGAARIVN--KKILRQESFEQLVNPDRLISAASVQIHG 588 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + E H F ++ +N FD + + Sbjct: 589 ITQDRVIGQPRI-GEVLPAFHAF---AQDTVLVAHNAAFDMKFLQLKEAATG-------- 636 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + S +L+ +A I + H A D Sbjct: 637 ------------LAFHQPVLDTLLLSAVVHPNQESHRLEAIAERFNITVLGRHTALGDAM 684 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T + + + Y Sbjct: 685 VTAEVWLRLIPLLNAMGIYTLR 706 >gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] Length = 1389 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 128/476 (26%), Gaps = 49/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 372 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 427 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ F + +N++FD + R D Sbjct: 428 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 477 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 478 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 524 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + F + + + + P Sbjct: 525 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 584 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + S + + L + ++ ++ + Sbjct: 585 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 644 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D E + + + ++ + + + L Sbjct: 645 PPAAYQTLIDDDLIKDEDELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLA 704 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + + +++ F D N + K Sbjct: 705 AQKSNPNRNKKLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLADQ 753 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L IE +++ L + E G + + + + L +I Sbjct: 754 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 809 >gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] Length = 318 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D + + + A + KL+ L GI +H+A D Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +I + G + + + TS +K N ++ Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKVEDDVREICTSLT-----YEAALKSEIGNTRIMID 273 Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344 ++ K E + + ++ + Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 317 >gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] Length = 315 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLLEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + NK L + + + + ++ + + + + Sbjct: 162 AAVYQKCASIEEEKTRK----ENKVVLDETVVYEAVKEILVRNKRNVEWLRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + V+ + G + K + TS +K N +L Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEDDVKEICTSLT-----CEPALKNEVGNTRIMLN 270 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347 ++ K + L+ L ++ D Y Sbjct: 271 SVEDVLKL-ESYIVEQYDVVLQTLRDYKENEMNADEKLKEYLN 312 >gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SSC/2] Length = 235 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 28/212 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V +D ET G D+ + V++ R + C + + +T Sbjct: 1 MKDYVAFDLETTGLSPDSDQIIEIGAVKI-RDGKISGKYN---CIIHPEIEVSDFIINLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + G+ E + +F I +N+ FD + + + Sbjct: 57 GISRDMLRK-GIPLKE---GVEEFLEFSGDLPILGHNVMFDYKFMKMAAA-------SFK 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + D L V R G + KL+ L + AH A D Sbjct: 106 YPFEKTGVDTLKVAR-------------KLLTGLENKKLETLCAHYHYVNQAAHRAYDDA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 AT + ++++ P E + + +++K Sbjct: 153 LATAVVFEQMKKEFPTEEEIFQPQQLQFKVKK 184 >gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] Length = 738 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 61/193 (31%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI D ET G R + V+V E ++ + +TGI+ Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKV-LNGEIVDEWQSL---INPMRHIPQSITRLTGIS 628 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V + + I +F + +N+ FD + R+ F R Sbjct: 629 NEMVSNAPV-FDDVADEIAEF---CAGSVFVAHNVNFDYGFFRSEFERLGR--------- 675 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R G +S+ L L A I+ N H A D A Sbjct: 676 -----------RFHAPKLCTVQMSRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAA 724 Query: 185 LALVWLIREKKPK 197 + LI+EK+ Sbjct: 725 AHVFRLIQEKRQT 737 >gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] Length = 221 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 70/221 (31%), Gaps = 25/221 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + DR + A VR D + I+S D + I GIT Sbjct: 21 FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTL---LNPDGK-AIKNSHIHGIT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + + + +N FD R + Sbjct: 77 NDMVVTAP-TFSEVYGDFTSYI---DGMQLFAHNAPFDSKMIVAEVDRMTGGDN-----D 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G+ + +D + G + L L G+++ +AH A AD +T Sbjct: 128 GDEFFPFIDTIDLAKQMLDCGP-----------YNLPALLDRLGLDNPDAHAAVADATST 176 Query: 185 LALVWLIREKKPKLF-EYLYDYRNKNQLRKLIDIQNMTPLV 224 + ++ + K + + ++ PL+ Sbjct: 177 VNMLHALFGFKRGEIGRKILRQGQAFRATNTWRKSHVAPLL 217 >gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes J0161] gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] Length = 928 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 231 Score = 98.7 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 70/241 (29%), Gaps = 30/241 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVF 59 M + YD ET G DR + A D +E EA Sbjct: 1 MPARPIFYDTETTGIKAEHDRIVEIAA--YDPISGCSLEEL------VNPGIPIPKEASK 52 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + IT E ++ +F S + +I +NN FD ++ R+ F R+ + Sbjct: 53 VHHITDDMVKDAP-TFKEVGQKFIEFCS-GDVILIAHNNDNFDVHFLRHEFKRHALEMPE 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W + +D L R LQ L IE NAH A Sbjct: 111 WRF------FDTLKWARRYR-------------PDLPRHALQFLREIYSIEANNAHRALD 151 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV + + + Y ++ PL V + + + Sbjct: 152 DVIVLHKVFEKMSDDLDIEQSYSLLCMPRDITVMPFGKYQGKPLQEVPEDYVKWLAKSEA 211 Query: 240 I 240 Sbjct: 212 F 212 >gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI P+ + E + + I I +N+ FD + R Sbjct: 59 TGIAPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ G+ H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 714 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 57/208 (27%), Gaps = 27/208 (12%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D E G + D AGVRV + + E F P +V G Sbjct: 508 SFVVFDCEMTGLNPEGGDEIISIAGVRV-VNGRVL-TGETFDRIINPGRPIPPGSVRFHG 565 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +E + QF S ++ +N FD + Sbjct: 566 ITDDDVQDKPPIEV----VLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAG-------- 613 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R + D L L GI H A D Sbjct: 614 ------------VRFDNPVLDTLLLSALLDGDEEDHSLDALCDRYGIAITGRHTALGDTL 661 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210 AT L+ I E+ + K Sbjct: 662 ATAELLVRIIERLEAQGYQTFGEVMKAS 689 >gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes EGD-e] gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL R2-561] gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] Length = 318 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D + + + A + KL+ L GI +H+A D Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +I + G + + + TS +K N ++ Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLT-----YEAALKSEIGNTRIMID 273 Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344 ++ K E + + ++ + Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNMM 317 >gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] Length = 219 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 62/203 (30%), Gaps = 30/203 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + V+ D+ET G DR + V + + E + + + Sbjct: 5 LAESVVVLDFETTGLSPEYGDRAIEIGAVLL-EEGEIVGRFQKLM---NPGFRISQFIEG 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT + E E +F + N I +N FD + R Sbjct: 61 YTGITNEMLKGQPCCE-EVMAEFSEFIAGRN---IVAHNAAFDRRFLDFELKRA------ 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAK 178 S L V R IY + + +LQ L GI + H A Sbjct: 111 -KRAYEGSCCCSLLVSRRIY-------------QDSPNHRLQTLVSHAGIRQTGVFHRAL 156 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 AD T L + E+ + + Sbjct: 157 ADAEMTAQLWLSMIERIRRQYGM 179 >gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 249 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 26/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G DV DR +FA R I+S E D + E+ I I+ Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETL---INPDRVISAESQRIHRIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E +I F + I +++ FD R ++ + Sbjct: 65 DAMLKDQPRI-SEVFPKIQAFLKEGD--YIVGHSVGFDLQVLTQEAERIG-----ETFLS 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + + + + L+ LA+ + + H A DV Sbjct: 117 KYCIIDTLRLAK--------------EYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162 Query: 185 LALVWLI 191 + + Sbjct: 163 INIFKHF 169 >gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] Length = 456 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 29/207 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D E L +TGI Sbjct: 2 YAIVDIETTGGHASAHGITEIAIIIHDGH-TITNRFETL---INPGMLIPMHIQVLTGID 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ +++ C +N+ FD + ++ + YD Sbjct: 58 NDMVKNAP-PFSSIAQHVYEILE---PCTFVAHNVNFDYSFVKHHLMASGYDLQS----- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L GI++ H A D AT Sbjct: 109 -----PKLCTVRLGRKIF----------PGLPSYSLGKFCGHMGIDNSARHRAMGDADAT 153 Query: 185 LALVWLIREKKPKLF-EYLYDYRNKNQ 210 L ++ + + R+K Sbjct: 154 AKLFSMMLLNDKEGHITHTLKQRSKES 180 >gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771] Length = 238 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 60/188 (31%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D +DR + G+ + + +T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + AE + I FF +N FD + F R Sbjct: 62 EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R P+ L L G++ H H A D Sbjct: 113 ERVVDTLSMARRKNPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158 Query: 184 TLALVWLI 191 + + Sbjct: 159 LAEVYIEM 166 >gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Alistipes shahii WAL 8301] Length = 255 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 27/197 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +D ET G D A DR + + V+V E+I + EA I Sbjct: 5 LKRPIIFFDLETTGVDTARDRIVEISMVKVMPDGEEI----TKTRRLNPGMHIPEEASAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT A+ +R + QF G+N+ RFD F R D Sbjct: 61 HGITDDDVRDCP-TFAQVARSLEQFIR--GCDFGGFNSNRFDLPVLVEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D R + + + ++K + AH A+AD Sbjct: 114 -----------VDFKRRKFIDVQNIFHKKEQRTLVAAYKF-----YCDKDLEEAHSAEAD 157 Query: 181 VYATLALVWLIREKKPK 197 AT ++ ++ Sbjct: 158 TKATYEVLKAQLDRYDD 174 >gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 693 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D ET G A R + VR +E V V +T Sbjct: 83 PRSFVALDVETTGLRPARHRIIEIGAVRY-EDGCCVERFSVL---VNPHRRLPVYIVRLT 138 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + L + + F + +IGYN FD + R Sbjct: 139 GIRDEDLLTAP-SFVDVAAAFRVFLGE--STVIGYNVG-FDLDFLNAELRRIGQGPL--- 191 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N D+L + RA + L + + G+ H A D Sbjct: 192 ---PNPALDVLPLARA-------------LLTANGRYDLDAICRSIGLARGTRHRALPDA 235 Query: 182 YATLALVWLIREKKPKLFEYL 202 AT L + E+ ++ Sbjct: 236 EATAVLYLHLVERAEQVGYRS 256 >gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes Finland 1988] gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 10403S] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10] Length = 317 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 25/195 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ P ++ +P + GI Sbjct: 32 NYTMLDIETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ +G+ + + +F + IIGYN NF ++ Sbjct: 90 TEEQLTNEGIPAEQAIKEFREFI--GDDTIIGYNVNFDL----------NFLYDLSQKYN 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + P +L D GI V H AD Sbjct: 138 LPVLNNDYVDVLRLAKVYYPRQHN-----------RLIDCMQRAGIAQVEQHHGLADSLD 186 Query: 184 TLALVWLIREKKPKL 198 T+ + + + Sbjct: 187 TIKVYNDFNQHFTED 201 >gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 958 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 54/181 (29%), Gaps = 28/181 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D ET G DR + A VR +I +TGI Sbjct: 5 SFVAIDVETTGTSPEHDRLIEVAAVRF-EDGREIGCFSRL---IDPGCPVPQRIQHLTGI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P +E E + F + +N FD + + F R WS+ Sbjct: 61 HPAMLAGKPRIE-EVVPDLASFL---GDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSY- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D ++ R + + +L LA G+ + H A+ D A Sbjct: 116 ------DTAELARVALPLA-------------RNHRLATLAELLGLPLEHHHRAEDDARA 156 Query: 184 T 184 Sbjct: 157 C 157 >gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1433 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 74/490 (15%), Positives = 147/490 (30%), Gaps = 55/490 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G D +F GV + ++ + F P P +T I Sbjct: 384 SYVSFDLETTGLSNYYDHIIEFGGVLI-ENGRVVKKMQTFIKAPVPVR---PFIQELTNI 439 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E E I +F ++ +N +FD + + R + + Sbjct: 440 TDADLVNAPSIE-EAMDEILEFLGDH---VLVAHNAQFDIDFIQETLRRIGKEPIQN--- 492 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--LANGIEHVNAHDAKADV 181 + D LD+ RA D S++L +A + G + AH A D Sbjct: 493 ---AVIDTLDLSRA-------------LFDNRRSYRLGSIARFMRIGYDEGVAHRADYDA 536 Query: 182 Y------------ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 L+ + I + + E + K+ + Q+ ++ Sbjct: 537 EVLSLVFLEMLRLEQLSTMQTIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLIT 596 Query: 230 FGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289 ++ + I R + + LF + Sbjct: 597 LSHTKYLAFFGKTSKGDAVMAEPRILRRELERFRENLLIGAGCTNSELF--EIAMNKSQE 654 Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKP 348 + V +MP+D + R L+ + ++ T L A+ N Sbjct: 655 ALERCVAFYDYVEIMPLDLYAPLLESQAIESESRLLDIINRIIATATKLNKPILAVGNVH 714 Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFFR--Y 403 Y S+ V +Y + I R + + ++ L F Sbjct: 715 YNHPSEKVIRDVYIHSQGIGGSRHPLYIFNEQRRMAFEAPNQHFRSTNEMLDAFAFLGAD 774 Query: 404 RARNFPHTLSEKEKQDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLI 457 +A + K + + +KK L +E L+ + + + G+ E + Sbjct: 775 KAYEYVVKNPVKLLNEIEDISPKKKELFTPHLENSDELLKDIVYHNAHKLYGNPLPELVQ 834 Query: 458 NALYEYLQWV 467 + L+ + Sbjct: 835 ARIERELKSI 844 >gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 398 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 38 LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 92 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + F + + +N FD + R F R + Sbjct: 93 DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 144 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 188 Query: 185 LALVWLIREKKPKL 198 + + P+ Sbjct: 189 WQFWRHLHDVVPRE 202 >gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] Length = 375 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + F + + +N FD + R F R + Sbjct: 70 DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 165 Query: 185 LALVWLIREKKPKL 198 + + P+ Sbjct: 166 WQFWRHLHDVVPRE 179 >gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] Length = 375 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + F + + +N FD + R F R + Sbjct: 70 DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 165 Query: 185 LALVWLIREKKPKL 198 + + P+ Sbjct: 166 WQFWRHLHDVVPRE 179 >gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459] gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 1816] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] Length = 311 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 28/197 (14%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D ET G A R + AGV++ + ++ + P+ +TGI Sbjct: 26 YVVADIETTGFSPAKGGRIIEVAGVKI-ENGKIVDEFNQL---INPEQKIYPKITELTGI 81 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + V + ++F + +N FD +D Y + Sbjct: 82 TNEMVSGKPV-FGQVLPEFYRFI---GDAVFVAHNKSFD------------WDRYLLHYF 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 A A I ++ L+D+ G++ N H A D A Sbjct: 126 EKVGII-------ADNASICTKILAKMYRPNLPAYGLEDICKDAGVQITNHHRALDDSIA 178 Query: 184 TLALVWLIREKKPKLFE 200 + L++ Sbjct: 179 LAHVFLRYLNTYAPLYQ 195 >gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 1432 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 131/476 (27%), Gaps = 49/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ +F + +N++FD + R + Sbjct: 471 DEMVGAAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F + + + + P Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + S + + L + ++ ++ + Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D E + + + ++ + + + + L Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDSHYVEPHEAIYRKILLA 747 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + + +++ F D N + K Sbjct: 748 AQKGNPNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDN-----TNKLADQ 796 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L IE +++ L + E G + + + + L +I Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852 >gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74] gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74] Length = 180 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G R + A R D Q + ++S P +TGI+ Sbjct: 2 YCIVDVETTGGVKGPTRLTEIAIFRHDGQ-QVVDSFHSL---LNPGCPIPPFIRHLTGIS 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + ++ I +N+ FD + + +D R + Sbjct: 58 DEMVQDAPT----FADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L + I H A+ D AT Sbjct: 111 -------LCTVRTSRKLL----------PGYPSYSLGKLCRSLEIPLNGRHRAQGDAAAT 153 Query: 185 LALVWLIREKKPK 197 + L ++ + + Sbjct: 154 VLLFEMLLKNDAQ 166 >gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] Length = 318 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D + + + A + KL+ L GI +H+A D Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +I + G + + + TS +K N ++ Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLT-----YEAALKSEIGNTRIMID 273 Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344 ++ K E + + ++ + Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 317 >gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes serotype 4b str. F2365] gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b str. F2365] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M] gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 674 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 61/207 (29%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V R + P+ Sbjct: 56 TFVVVDLETTGGRATGTEASPPDAITEIGAVKV-RGGVILGEFATL---VDPQRSIPPQI 111 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++ + FF ++ +N FD + R R Sbjct: 112 VRLTGITTAMLCDAPTID----SVLPMFFEFVGNSVLVAHNAGFDIGFLRAAAGRCDIAW 167 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +L +R + A S +L LA + H A Sbjct: 168 PGSK---------VLCTVRLARRVL--------SREEAPSVRLAALARLFSVATQPTHRA 210 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 211 LDDARATVEVLHALIERVGNQGVHSYA 237 >gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] Length = 928 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 375 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + F + + +N FD + R F R + Sbjct: 70 DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWRHLH 173 >gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] Length = 237 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 64/204 (31%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V D ET G V D+ + V+V R + +++ P + Sbjct: 1 MVKDYVCVDIETSGIRVKWDKIIEIGAVKV-RDGKAVDTFSEL---INPGLKLSPYITEL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + +E + +F +I +NI FD + + Sbjct: 57 TGITDEMLKDKPFIE----EVLPRFIEFAGDDVIMGHNIMFDYSFLKQNA-------INQ 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R G S L+ L GI N H A D Sbjct: 106 KLKFDKMGIDTLKIAR-------------KTLKGLESRGLEYLCNYYGIADENHHRAFND 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 T L ++ EK L++ Sbjct: 153 AEVTSKLYNVLMEKFGTESPGLFE 176 >gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 398 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 38 LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 92 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + F + + +N FD + R F R + Sbjct: 93 DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 144 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 188 Query: 185 LALVWLIR 192 + Sbjct: 189 WQFWRHLH 196 >gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] Length = 1432 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 131/476 (27%), Gaps = 49/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ +F + +N++FD + R + Sbjct: 471 DEMVGAAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F + + + + P Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + S + + L + ++ ++ + Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D E + + + ++ + + + + L Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDSHYVEPHEAIYRKILLA 747 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + + +++ F D N + K Sbjct: 748 AQKGNSNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDN-----TNKLADQ 796 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L IE +++ L + E G + + + + L +I Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852 >gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A] Length = 931 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 6 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 62 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 113 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 158 Query: 181 VYATLA 186 T Sbjct: 159 AEVTAD 164 >gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] Length = 466 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 30/190 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D Q +R VD + + E+ + + I GI Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTL---VDPGGPIPRASSKIHGI 330 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +FF ++ +N FD + R Sbjct: 331 TDKMVMGQPR----IAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGV-------- 378 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 ++D + + L + GI H A D Sbjct: 379 --AFDHPIVDTVLVSAIIFGTTERHM----------LDVVCERLGIRIEKKDRHTALGDA 426 Query: 182 YATLALVWLI 191 T + + Sbjct: 427 RVTAEAMKRM 436 >gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia amoebophila UWE25] gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus Protochlamydia amoebophila UWE25] Length = 249 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 64/220 (29%), Gaps = 27/220 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ D ET G D DR + A + D + E + ++ I Sbjct: 6 KNKFICIDCETTGLDPQQDRIIEVAVMCFDGN-QVYAQMESL---INPECPIPETSIAIH 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + +I + S II + + FD R+ Sbjct: 62 HITQDMVKDKPTINH-VLPQILELISDH---IIIGHGVGFDIEILAVAAERHGIPCKIRK 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 LD +R + + L+ L I AH A +DV Sbjct: 118 NR-------FLDTLRMARLY-----------GESPVNSLEYLRKHFNIPLEGAHRAMSDV 159 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + + ++ E L++ +K L + + Sbjct: 160 IVNKEVFKHLSKRYRTT-EQLFEVLSKPILMNTMPLGKHK 198 >gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] Length = 1432 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 62/477 (12%), Positives = 135/477 (28%), Gaps = 51/477 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ F + +N++FD + R D Sbjct: 471 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 521 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMFGASRSNTALIAPV 243 L++ + + F + + + + P V V + N + + Sbjct: 568 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHVSVLALNQEGLKNMYKLVSL 627 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 A +Y + S + + L + ++ ++ + Sbjct: 628 AS-TKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEV 686 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---L 360 P + + D E + + + ++ + + + L Sbjct: 687 QPPAAYQTLIDDDLIKDEDELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILL 746 Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQ 418 + + + + +++ F D N + K Sbjct: 747 AAQKSNPNRNKKLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLAD 795 Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L IE +++ L + E G + + + + L +I Sbjct: 796 QIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852 >gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] Length = 219 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 63/219 (28%), Gaps = 30/219 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + V+ D+ET G DR + V V E ++ + + Sbjct: 5 MADSVVVLDFETTGLSPQYGDRAIEIGAVLV-EHGEIVDRYQKLM---NPGFRISRFIES 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT + E E +F + N I +N FD + R Sbjct: 61 YTGITNEMLSGQPCCE-EVMTEFSEFIAGHN---IVAHNASFDRRFLDFELKRAKR---- 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178 A + + + KLQ L GI + H A Sbjct: 113 ----------------VYEGACCCSLLVSRRIYQDSPNHKLQTLVSHAGIPEIGSFHRAL 156 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 AD T L + ++ + + ++ ID Sbjct: 157 ADAEMTAHLWMSMIDRIRLQYGISMIFFDQLSELSKIDK 195 >gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45] gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma bovis PG45] Length = 1458 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 77/478 (16%), Positives = 143/478 (29%), Gaps = 46/478 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G +F V +++ + T FF KP D +TGI Sbjct: 423 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKV-GKTTQFFIKPKD--KIGSFTTELTGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q G+ E +I+ + I +N +FD + + F N Sbjct: 480 TQQMLDSKGLYIKEGLEKIYDCL---DGKIAIAHNAKFDFNFLKEQFRLNNM-------- 528 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 R ++D + A G KL+D+A G+ + AH D Sbjct: 529 -QFPRVTVIDTLVASRIGF----------PGYKRHKLEDVASRLGVVYDPNVAHRGDYDA 577 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + I + + +D +K +L + + ++ + LI Sbjct: 578 KVLANVWVNIISELNAKGIFTFDDLSKYSSNELYAKMHGYEVSTIALNNQGLKKQFELIT 637 Query: 242 -PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 + + + R + S L L + I E+ L Sbjct: 638 DCLTKKYINGPITFKEDFASLNRTDILVGSGTLKGLLIDKY--FYSSHDDFINELKLYDF 695 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLL--RQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P C + I K+ + L+ + + + + K Q++ Sbjct: 696 IEI-PAPQCFEHWIRYGFITTKQLQKGLSEIIYEAKKHSKIFIATADVKYLDPWDQEIFK 754 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFR--------YRARNF 408 L R + + +L N F ++ L + F N Sbjct: 755 SLVYAKGIKNARHYLFDYKKAEEGRLVIPNQRFLTTEEMLKQFAFLQDNQLIEELVIDN- 813 Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 L ++ E K L ++ K KL L + + E L + + + Sbjct: 814 -TQLIANMAENI-EVIKSGLFTPEFDDSKKKLYDLVYKNAYAKYGEKLPEIIQKRIDS 869 >gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] Length = 1462 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 66/198 (33%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + + +P +P Sbjct: 2 YLIFDTETTGLPKRWDAPLTDSDNWPRCIQIAWQLHDEMGNLI-EHQDYLVRPEGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A + GI+ A +G+ E + ++ T I N+ FD +R Sbjct: 61 -DAERVHGISTDLAREEGISLEEMLEKFNEALGK--TKFIVGQNLGFDVNIMGAELHRAG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 D S+ L V+ + + + P G FKL L Sbjct: 118 MD----------SQLLELPVLDTCTETTAEMCRIPGGRGGK--FKLPTLTELHEYLFDEP 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FGEAHNATADVEATTRCF 183 >gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] Length = 210 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 66/223 (29%), Gaps = 30/223 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F + D+ET G A DR + V V + E A + Sbjct: 1 MNQGFAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI-----HVDRSVGASW 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + IT + L E + + + + +N+ FD + + R Sbjct: 56 VHHITARDLLHAPDFEG-IAHELRDLLA---GRVFVAHNVSFDSRFLLAEYSRMGASIPV 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +L M+ + G KL D GI + +AH A + Sbjct: 112 HQST-------MLCTMKLSRSLIGRG-------------KLSDCCDYFGIANEDAHSALS 151 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D +AT L+ + E P + + + P Sbjct: 152 DAHATALLLGRLLEADPNWPGFQRRLESAADAAEQWPTFAALP 194 >gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC 49188] gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 27/185 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ T + P PEA+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELINKF-PTGRTFHKYINPQ-GRQVHPEALAVHGISN 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L AE +FF + + +N FD + R + Sbjct: 62 EQLLDKP-TFAEVLDEFLEFF---DGAKLVAHNAMFDLGFINAELARLGQAEIQSE---- 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 D L + R + P+ L L GIE+ + H A D Sbjct: 114 -RIIDTLALARRKHPMGPN--------------SLDALCKRYGIENGHRTLHGALLDSEI 158 Query: 184 TLALV 188 + Sbjct: 159 LAEVY 163 >gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] Length = 1449 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 29/198 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ +D ET G D +F VR+ + I+ ++F T I Sbjct: 393 TYISFDLETTGLSCYFDHIIEFGAVRI-KNSTIIDRKQLF---IKPPVSIPGFITSKTNI 448 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE I + ++ +N FD Y+ R Sbjct: 449 TNDMVKNA-KPFAEAIDEILDYIKD---DVLVAHNATFDYYFLNEELRRIGRKPL----- 499 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D LD+ RA+ +++L +L+ AH A D Sbjct: 500 -TNVVIDTLDMSRAV-------------LPDRRAYRLGNLSRYYHVNYNEEEAHRADFDA 545 Query: 182 YATLALVWLIREKKPKLF 199 A + + + F Sbjct: 546 GALADVFLCLLKDAKDKF 563 >gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] Length = 618 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 465 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 57/206 (27%), Gaps = 25/206 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R + + + +TGI Sbjct: 21 TFVVVDLETTGGAPGARSVTEIGAVKV-RGGQVLAEFSTL---VNPGVAIPAQITMLTGI 76 Query: 64 TPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 T E + + I+ +N RFD + R + Sbjct: 77 TNAMVAGAPGVRTCVEAFLDWADLLA--DDVILVAHNARFDVGHLRGAAAAVGLEWPE-- 132 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + KL LA G + H A D Sbjct: 133 ----PRVLDTLALARRAWT-----------RSEVPNHKLGTLAAFVGSQTRPTHRALDDA 177 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207 AT+ ++ E L + + Sbjct: 178 RATVDVLHAALEVMAPLGVTHLEDLS 203 >gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85] gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 645 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V + + P+ Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 97 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A + FF ++ +N FD + R R Sbjct: 98 VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 151 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L MR D A S +L LA + H A Sbjct: 152 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 196 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223 >gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM 1503] Length = 493 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V + + P+ Sbjct: 34 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 89 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A + FF ++ +N FD + R R Sbjct: 90 VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 143 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L MR D A S +L LA + H A Sbjct: 144 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 188 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 189 LDDARATVDVLHALIERVGNQGVHTYA 215 >gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis CDC1551A] Length = 647 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V + + P+ Sbjct: 44 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 99 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A + FF ++ +N FD + R R Sbjct: 100 VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 153 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L MR D A S +L LA + H A Sbjct: 154 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 198 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 199 LDDARATVDVLHALIERVGNQGVHTYA 225 >gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97] gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] Length = 645 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V + + P+ Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 97 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A + FF ++ +N FD + R R Sbjct: 98 VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 151 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L MR D A S +L LA + H A Sbjct: 152 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 196 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223 >gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv] gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11] gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis H37Ra] gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis 02_1987] gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis 94_M4241A] gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92] gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis EAS054] gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85] gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17] gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN 1435] gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis CPHL_A] gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46] gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210] gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN 4207] gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN R506] gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN V2475] gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148] gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 645 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V + + P+ Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 97 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A + FF ++ +N FD + R R Sbjct: 98 VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 151 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L MR D A S +L LA + H A Sbjct: 152 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 196 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223 >gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551] gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium tuberculosis CDC1551] gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] Length = 637 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 FV+ D ET G D + V+V + + P+ Sbjct: 34 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 89 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V +TGIT ++A + FF ++ +N FD + R R Sbjct: 90 VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 143 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L MR D A S +L LA + H A Sbjct: 144 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 188 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ + E+ + Y Sbjct: 189 LDDARATVDVLHALIERVGNQGVHTYA 215 >gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 1435 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 54/474 (11%), Positives = 124/474 (26%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 473 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++ F + +N++FD + R Sbjct: 474 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 523 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ L LA + + H A D AT Sbjct: 524 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 570 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P Sbjct: 571 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 630 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S + + L + ++ ++ + Sbjct: 631 ASTKDFYRIPRTPKSDLADLHEGLLYGSGCWQGDVFVAMMQKGYDEAREKAKFYDFLEVQ 690 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E ++ + + ++ + D + + Sbjct: 691 PPATYSQLIADGLIKDEDQLEEIISNIYKLGKELNKPVVATGDSHYVEPHDAIYRTILIS 750 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIENTNKI--ADEISE 802 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L I +++ L + E G+ + + + + L +I Sbjct: 803 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 855 >gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 315 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 82/275 (29%), Gaps = 34/275 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + N L + + + ++ + + + + Sbjct: 162 AAVYQKCASIEEEAKRK----SNTEVLDETAVYEAVKEILVRNKRNIEWIRCMNVGSYLD 217 Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRL 277 Y + + D ++ L Sbjct: 218 IKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSL 252 >gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] Length = 202 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 59/192 (30%), Gaps = 30/192 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++V+ D+ET G D+ Q V+ E E + ITG Sbjct: 40 ENYVVLDFETTGLRPGNDKIIQIGAVKYVNH----EREETMYLMVNPQRSISNTITRITG 95 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + V+E H + I +N FD + + Y Sbjct: 96 ITNKDVENAPVIE----DIAHDLITFIGDLPIIAHNAPFDMGFLYALEDITPIPEY---- 147 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + + R + KL L +EH AHDA D Sbjct: 148 ----TVIDTVKLARKA-------------ITQTPNHKLTTLTAFLKLEHD-AHDALGDCL 189 Query: 183 ATLALVWLIREK 194 AT A+ ++ Sbjct: 190 ATAAIYQYCYDR 201 >gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 315 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 34/275 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A + KL+ L GI +H+A D Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + L NK L + + + + ++ + + + + Sbjct: 162 AAVYQKCASIEEEAKRKL----NKKALDETVVYEAVKEILVRNKRDIEWIRCMNVGSYLD 217 Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRL 277 Y + + D ++ L Sbjct: 218 IKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSL 252 >gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] Length = 204 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 30/197 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N ++ D+ET G + DR + V++ E +++ + + T Sbjct: 5 NSVIVLDFETTGLSPNMGDRAIEIGAVKL-INGEVVDTFQQLM---NPGFRVSSFIEGYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E E + H F + N + +N FD + F R D Sbjct: 61 GITNAMLANAPSCE-EVMSQFHSFIADDN---LVAHNASFDKRFLDAEFDRINKDYL--- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 D + + D A S KL DL I++ H A AD Sbjct: 114 -------GDFACSLLVSRRLNQD----------APSHKLGDLVRYKQIDNDGVFHRALAD 156 Query: 181 VYATLALVWLIREKKPK 197 T L L+ E + Sbjct: 157 SQMTAKLWLLMLEDIEQ 173 >gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 233 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 12/200 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D D V V+ ++ T +P P E++ + +T Sbjct: 38 YTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLT 97 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P++ AE + + + ++ + D + + Sbjct: 98 PEELRDAPPP-AEVLAELLRLIA---GRVLVVHVAEIDVRFINAALK-------PFGGRL 146 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + ++ + + P + +L+ L A G+ H+A D T Sbjct: 147 RRPILDTARLAMTLHLNAQWLGELPRDMPA-PAVELRGLTGALGLPIYAQHNALNDAVTT 205 Query: 185 LALVWLIREKKPKLFEYLYD 204 L Sbjct: 206 AQLFIAQATLLADQGRNNLA 225 >gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] Length = 1450 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 54/414 (13%), Positives = 110/414 (26%), Gaps = 39/414 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +F+++D ET G + + V++ ++ + + Sbjct: 420 LEENFIVFDLETMGLNSHEHEIIEIGAVKLRGN-RIVDRFSQL---VNPQKPIPKKIQEL 475 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + +E E + +F + +N FD + R R Y Sbjct: 476 TNITQEMVDNMPTIE-EVLPKFMEFV---GDATMVAHNAAFDMGFIRRDVKRLLGYDY-- 529 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D L + R +Y + L++L G+ + H A D Sbjct: 530 ----TPAIIDTLQMARDLY-------------PDLKGYGLKNLNKVLGLSLESHHRAVDD 572 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + + E+ + + L +V V A N + Sbjct: 573 SQATANMFIIFMERYLEKGITNLNQITGAFPINLKKQDTHNVMVLV--QNLAGLKNMYKL 630 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-----LVPVPIKEV 295 A Y + S + + L F++ EL K + Sbjct: 631 VSEAHIDYYGNKKPRILKSHLEKYREGLIVGSSMTVHFSNDGELTDYYMRYDYESIEKNI 690 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 L+P + + + + + K SS+ Sbjct: 691 GFYDYIELLPKGAYSEIYEDDGTGSISSFKAIEDM---NRYFYNLAKEKGILVTASSNVH 747 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN 407 + + + + + + +D L E + AR Sbjct: 748 YLDEEDYKIRSILLYGSGNVFRANQYKIDNKFYFRTTDEMLEEFSYLGEDIARE 801 >gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] Length = 365 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] Length = 1465 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D+ + V++ + + ++ F + + V +TGI Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKL-KNGKVLDRFSEF---VNPQTIIPKKIVELTGIN 459 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +++ + R +F T ++ +N + S+ N + + Sbjct: 460 DNMVKDSDIID-KVMPRFLEFVK--GTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTL 516 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ + DV R F L L I+ N H A D AT Sbjct: 517 EWSKILVDDVKR---------------------FNLDTLTKRFNIKLENHHRAVDDANAT 555 Query: 185 LALVWLI 191 L + Sbjct: 556 AELFKKL 562 >gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC] gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118] Length = 1435 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 54/474 (11%), Positives = 124/474 (26%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 473 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++ F + +N++FD + R Sbjct: 474 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 523 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ L LA + + H A D AT Sbjct: 524 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 570 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P Sbjct: 571 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 630 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S + + L + ++ ++ + Sbjct: 631 ASTKDFYRIPRTPKSDLADLHEGLLYGSGCWQGDVFVAMMQKGYDEAREKAKFYDFLEVQ 690 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E ++ + + ++ + D + + Sbjct: 691 PPATYSQLIADGLIKDEDQLEEIISNIYKLGKELNKPVVATGDSHYVEPHDAIYRTILIS 750 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIENTNKI--ADEISE 802 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L I +++ L + E G+ + + + + L +I Sbjct: 803 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 855 >gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 476 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 29/181 (16%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + DR + + +D E+IE E P +TGI+ Sbjct: 9 IVDLETTGGHITRDRITEIGILLID--GERIERYETL---VNPGQPIPPFIENMTGISDA 63 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 F+ + ++ +N RFD + +N F R + Sbjct: 64 MVAEAPP----FAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGH----------V 109 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + ++L ++ P + L L +GI + H A AD A Sbjct: 110 FQSEVLCTVKLSRRLYPQHFK----------HSLDSLIARHGIVLADRHRAMADALAVYH 159 Query: 187 L 187 Sbjct: 160 F 160 >gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis KBAB4] Length = 315 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTKVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D + + + A + KL+ L GI +H+A D Sbjct: 116 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + NK L + + + ++ + + + + Sbjct: 162 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 216 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +I + G + + + TS +K N ++ Sbjct: 217 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLT-----YEAALKSEIGNTRIMID 270 Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344 ++ K E + + ++ + Sbjct: 271 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 314 >gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 458 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 68/201 (33%), Gaps = 28/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ I D ET G + + A + D + I+S + + +TGI Sbjct: 2 NYAIVDIETTGGSTKSSKITEIAIYKHD-GMKIIDSFDTL---VNPEMPIPEFISRLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E +++I +F CI +N+ FD R+ F YD Sbjct: 58 HDDMVENAPK-FYEIAKQIIEFTED---CIFVAHNVGFDYGIIRHEFKLLGYDY------ 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R L +RA PD S+ L L A GI+ + H AK D A Sbjct: 108 ----RKAHLCTVRASRYVIPDHE----------SYSLGKLTKALGIQLIGRHRAKGDAEA 153 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L L+ K + Sbjct: 154 TAHLFTLLHTTDSKGLQTFIQ 174 >gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7] gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7] Length = 1500 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T+ + +D ET G + D+ + V++ R E ++ ++ + + Sbjct: 445 LTDEIICFDLETTGTNAKEDKIIEIGAVKL-RNLEIVDKFDML---VDPEVPLTEFISNL 500 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYR 119 T IT A+ I F + + +N FD + RN R D Sbjct: 501 TNITDDMLKGQ----ADIRTAIDAFIAFCGDSPCLVAHNAPFDTGFIRNTCERLGIDFNF 556 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S D + + + + KL +A G H Sbjct: 557 -------SSVDTVPMSQLM-------------LPQLERHKLNYVAEHFGYGDFQHHRGCD 596 Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205 D + + + + + Sbjct: 597 DAEVLGHIFIELSKMLMAQYPLVLIT 622 >gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria monocytogenes HCC23] gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria monocytogenes HCC23] gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99] Length = 928 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] Length = 258 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 50/184 (27%), Gaps = 19/184 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET GRD A DR + + + R E + E+ I GI Sbjct: 45 IAFVDVETTGRDPAGDRIIELG-IVIGRSGEILTRYNWL---IHPGRPIPAESTAIHGIK 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + I F YN FD + R Sbjct: 101 DADVEGKP-SFAEVAEEILGCFK--GAIPAAYNA-TFDRSFLLAELERVGMRPREPP-PA 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D + S L D+A GI AH A D A Sbjct: 156 MRREVDWVDPLTFARELY----------KNEESRALGDMAARLGISLEKAHRATDDAEAA 205 Query: 185 LALV 188 L ++ Sbjct: 206 LQVL 209 >gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] Length = 256 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 27/197 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + + V+V ++ E + + PE+ I Sbjct: 5 LKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGKE----ESKTRRINPEMPIPPESTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + GYN+ RFD F R D Sbjct: 61 HGITDEDVKDCP-TFKEIAKSLAAQIE--GCDLAGYNSNRFDIPLLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + + + A ++K NAH A+AD Sbjct: 114 -----------IDLNKRKFVDVQTIFHKMEQRTLAAAYKF-----YCDKSLENAHTAEAD 157 Query: 181 VYATLALVWLIREKKPK 197 AT ++ ++ P+ Sbjct: 158 TMATYEVLKAQLDRYPE 174 >gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] Length = 204 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 69/216 (31%), Gaps = 30/216 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N ++ D+ET G + DR + V++ + +++ + + T Sbjct: 5 NSVIVLDFETTGLSPNMGDRAIEIGAVKL-IDGQVVDTFQQLM---NPGFRVSSFIEGYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT AE + F N + +N FD + F R Sbjct: 61 GITNNMLAGAP-SCAEVMSDFNDFIGNDN---LVAHNASFDKRFLDAEFERI-------- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 N N R + + + + A S KL DL I++ H A AD Sbjct: 109 --NRNYRGEFACSLLVSRRLNQE----------APSHKLGDLVRYMNIDNDGVFHRALAD 156 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 T L L+ E + + + ++ K Sbjct: 157 SQMTAKLWLLMLEDMQQQGIHQPSFSLMQKVSKTSK 192 >gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC 33323] gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus gasseri ATCC 33323] Length = 1432 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 128/476 (26%), Gaps = 49/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ F + +N++FD + R D Sbjct: 471 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 521 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + F + + + + P Sbjct: 568 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + S + + L + ++ ++ + Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D E + + + ++ + + + L Sbjct: 688 PPAAYQTLIDDDLIKDEDELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLA 747 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + + +++ F D N + K Sbjct: 748 AQKSNPNRNKKLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLADQ 796 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L IE +++ L + E G + + + + L +I Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852 >gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] Length = 1432 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 53/478 (11%), Positives = 133/478 (27%), Gaps = 53/478 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ +F + +N++FD + R + Sbjct: 471 DEMVGAAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F + + + + P Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + S + + L + ++ ++ + Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D E + + + ++ + + + + L Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDAHYVEPHEAIYRKILLA 747 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 + + + + +++ F + + + Sbjct: 748 AQKGNPNRNKNLPDLHFYSTQEMLD-------------AFSFLGEDVAKEIVIDNTNKLA 794 Query: 422 EHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 +H +++ L IE +++ L + E G + + + + L +I Sbjct: 795 DHIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852 >gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] Length = 923 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 71/215 (33%), Gaps = 30/215 (13%) Query: 1 MTN--HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + I D ET G A DR Q A V + +IE T F Sbjct: 1 MMESQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW--EIERTYTKF--INPGKAIPTFI 56 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T IT + E + I++ + C+ +N FD + + F R Sbjct: 57 QDLTHITNEDVKDS-YPFEEHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP- 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + D +++ + + FKL DLA IE NAH A Sbjct: 112 -----KWQGKKMDTVELAKI-------------LFPMSLGFKLGDLAADLNIELANAHRA 153 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 D AT L ++ L + + +K R Sbjct: 154 DDDARATAELFKCCWKELLSLPQLTLEQMHKRSFR 188 >gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma citri] Length = 1453 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 59/457 (12%), Positives = 116/457 (25%), Gaps = 54/457 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F V +D ++ +TGI Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAVIMDG---ISGERQIINHLFKPSVKLSSFTTELTGI 465 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F I Q I+ +N FD + ++ + + Sbjct: 466 TDELLADKPT----FIESIDQILEYFKDAILIAHNAEFDLGFIQSWLKKAGRSEINNT-- 519 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 D L + R + +++L +A AH D Sbjct: 520 ----VIDTLQLSRI-------------LEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDA 562 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + K + +D + + + + P + Sbjct: 563 IVLTDIYEHQLRKMINNYGIEFDN-DIENIHDPAVYKKLRPKHMAILAKNQAGLLELFKL 621 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + H +Y S S + +L + + + Sbjct: 622 ITSAHTKYFYSSPKLLRSVIEQHRSNLLIGSSCVNGDVFEVARNKNLSELRETIKFYDYI 681 Query: 302 ILMPIDYCK------KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P K ER K + L + + + Sbjct: 682 EVQPPSVYKHLVQMGDLSEERLLTVIKDIVFTAKELNKLVVATGDVHYLNPEDKIFREVY 741 Query: 356 VDSQLYDGFF------ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN-- 407 ++++ G D+ LRT E ++ D Sbjct: 742 INAKGIGGRPHPLYDYKKRVTDNPDQFLRTTMEMMNEFKFLNDDE--------LIYEIVV 793 Query: 408 -FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443 P+ +S++ ++ +E K L +IE L+ L Sbjct: 794 TNPNLISDQIEK--VEIIKDKLYTPKIEGSDQLLKEL 828 >gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822] gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis] Length = 247 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 58/180 (32%), Gaps = 27/180 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G VA +FA VRV + D +P P +TGIT Sbjct: 80 FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVR--TDGRVP-PFISRLTGIT 136 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + RDGV + F + ++N FD + + R + Sbjct: 137 QAEVERDGVPVRQAFGDFLDFIE---GGPLFFHNASFDRRFLQAAADRTGLPFEAQT--- 190 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R + S KL LA G H A ADV T Sbjct: 191 ----HCTLMLARQAW-------------PELPSHKLNVLARHLGAS-EPTHRALADVRTT 232 >gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50] gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50] Length = 247 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 58/180 (32%), Gaps = 27/180 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G VA +FA VRV + D +P P +TGIT Sbjct: 80 FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVR--TDGRVP-PFISRLTGIT 136 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + RDGV + F + ++N FD + + R + Sbjct: 137 QAEVERDGVPVRQAFGDFLDFIE---GGPLFFHNASFDRRFLQAAADRTGLPFEAQT--- 190 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R + S KL LA G H A ADV T Sbjct: 191 ----HCTLMLARQAW-------------PELPSHKLNVLARHLGAS-EPTHRALADVRTT 232 >gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] Length = 1458 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 66/455 (14%), Positives = 136/455 (29%), Gaps = 34/455 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D+ +F ++ + ++ES ++F + + IT I Sbjct: 420 TYVIFDIETTGLSPYYDKIIEFGAIKY-HKGVQVESIQMF---INPEEKISDKIFAITKI 475 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I F ++ +I +N I+FD + N D + Sbjct: 476 SNEDVKDA-LKIKEALVKIKDFI--GDSVLIAHNGIKFDLPFLNCKLEENKMDIIKNP-- 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L+D ++ A + S + + AH A D Sbjct: 531 -------LIDTLQISRAINEQIHGH--------SLGVIARKYKIDYDETQAHRADKDAEY 575 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI--A 241 L + + E + + N N + +N L+ V N + Sbjct: 576 LLNIWKRMLENQKLQDIKTLNEINSNLQNDFLRERNRGSLITVYCKNEGEIRNLYKLIST 635 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 + + V N + F +S + + + ++ IK+ + Sbjct: 636 SLTSNFDGGPKVYWENFNEFNNSFIVSNSATEGEIFEAAMSNTQQVLEDIIKDKYDFITI 695 Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + ++ +++ + A + Y + S +V ++Y Sbjct: 696 GSPECFLHDIHREIYKRGWIEDAIKR--IIKIANKYNKKVVATSDTYYLNESDEVYFRVY 753 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421 ++ L +D E F N P L Sbjct: 754 VNAKVLGGKRNRLFKYNELNTVLPKYYFRTTDELKDEFSFL----NDP-VLVNDIVVTNS 808 Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGL 456 + L + I+ K L S E D+ K+ + Sbjct: 809 NYIAS-LIDANIKPIKETLHSPHIEGASDKLKQLI 842 >gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 200 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 58/197 (29%), Gaps = 27/197 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G D+A DR + V + E+ A I I Sbjct: 2 TYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSL---IDPQR--SITAQHIHHI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + A + R+ + + II +N FD + F R Sbjct: 57 SSAMVADAP-SFALVAERVAKVL---DGQIIVAHNAPFDLGFLNAEFARAQAGI------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R + + + + P+G S L LA GIE AH A AD Sbjct: 107 -SIDRANAVCTLDQSRIYCPEG-----------SHSLIGLAARLGIETPVAHRALADALT 154 Query: 184 TLALVWLIREKKPKLFE 200 L + + Sbjct: 155 CTELFRHYHACESRGHR 171 >gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 61/190 (32%), Gaps = 20/190 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR Q A V DR ++ E L EA I GIT + Sbjct: 15 FDTETTGLDVFKDRIVQAALVGQDRSGREVFREEWL---INPGILIPREATKIHGITSDR 71 Query: 68 ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ DG AE +I C + N +D R+ Sbjct: 72 AMEDGQDPAEAIEQITGLLEKALRAGCALVIQNAPYDLALLDAEAQRHSVVPLA-ERRPV 130 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D + + + L L+ G+ + AH A AD TL Sbjct: 131 APVLDPVMLAKV--------------AKVEGRHSLAALSARFGVTNPRAHTAYADAVTTL 176 Query: 186 ALVWLIREKK 195 A++ + Sbjct: 177 AVLRKLMMID 186 >gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 249 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 26/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G DV DR +FA +R + I+S E D + E+ I I+ Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAMRFTFD-KVIDSMETL---INPDRVISAESQRIHRIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F + I +++ FD R + Sbjct: 65 DAMLKDQPRI-AEVFPKIKSFLKEGD--YIVGHSVGFDLQVLTQEAERIGESFLSKYYII 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + L+ LA+ + + H A DV Sbjct: 122 DTLRL-------------------AKEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162 Query: 185 LALVWLI 191 + + Sbjct: 163 INIFKHF 169 >gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] Length = 318 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPELSIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ D + + + A + KL+ L GI +H+A D Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 A+ + + NK L + + + ++ + + + + Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + +I + G + + + TS +K N ++ Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLTHEA-----ALKSEIGNTRIMID 273 Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344 ++ K E + + ++ + Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 317 >gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 876 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A +++++ E ++ E F ++ ++ Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPVK----DSYYVH 562 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + +F II +N+++D + RN ++ Sbjct: 563 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 619 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 620 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I EK + +K+ Sbjct: 662 IATGELLVRAINEKIRETSMERMALMSKH 690 >gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489] gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489] Length = 1479 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 68/384 (17%), Positives = 114/384 (29%), Gaps = 36/384 (9%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPKRWDAPYTDTDNWPRCIQIAWQLHDDMGNVI-EHQDYLVKPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ A +DGV AE + + T + N+ FD F+R Sbjct: 61 -DAEKIHGISTALAEQDGVPLAEVLEKFNTALEK--TKFVVGQNVGFDLNIMGAEFHRLQ 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 ++ L V+ + Q P G FKL L G Sbjct: 118 VENQLQE----------LPVLDTCTEHTASLCQIPGGRGGK--FKLPTLTELHQFLFGEP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 AH+A ADV AT + K+ + K N P+ + Sbjct: 166 FGEAHNATADVEATTRCFLELIRKQQ---YTAEQLDVQPDYFKNFSEANPKPIELIGLKH 222 Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290 + + IA A + V + ++ + + L S + VP Sbjct: 223 INLKKASKKIA-DALWAKDTGGVSKEEIKENLATLESAEFSHLHNHTQFSILQSTISVPD 281 Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350 IK N P + D+ + + N + + R++A Sbjct: 282 LIKATAKNNMPAVAMTDHANMMGA--FHFVNGVLNHNKGVKSRNDANEIRYEATQENRLE 339 Query: 351 SSSQDVDSQLYDGFFADVDRQIMD 374 + + + + + Sbjct: 340 EGEEPLHEFIPEKEITPIIGCEFQ 363 >gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 249 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 27/205 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D ET G DV DR + A R + +E E + ++ I I Sbjct: 8 TFVCIDCETTGLDVHADRIIEVAVARFTFD-QILEQFESL---INPECPIPESSIQIHHI 63 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +I I + + FD R Sbjct: 64 TAEMVADKP-PITQVIPQILDAVRSH---TIVGHGVLFDIELIAVAAERAGIPCSIRQN- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R + L+ L + I+ AH A +DV Sbjct: 119 ---PYLDTLRLAR--------------LYGESPINSLEQLRMHFNIQFEGAHRAMSDVLV 161 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208 + + + ++ + L+ +K Sbjct: 162 NIEVFKHLAKRYKTT-DNLFQILSK 185 >gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL J1-175] Length = 807 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ R +Y G S+KLQDL+ + H H A +D Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155 Query: 181 VYATLA 186 T Sbjct: 156 AEVTAD 161 >gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma] Length = 1492 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 24/241 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +++V+ D ET G DR A V++ + + IE + P D +T Sbjct: 403 HNYVVLDIETTGFSKTRDRIISIAAVKI-QNGKIIEYFDELI-NPGKDIKISNLIQRLTN 460 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + L + E + F C++ +N FD + + F Sbjct: 461 ISDEILLNKPHI-KEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPL--- 516 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++D + + +++ S + SFK++ H+A D Sbjct: 517 ------LPVIDTLTLAQKYFNKILKYFSLEKIVKSFKIKL------DSEGQYHNALFDAR 564 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT + + E+ + + + HV+ + + L Sbjct: 565 ATALIFLEMLEQLEAQKIFNFYD------LQGSLDIKFERPYHVNIIVKNKKGYNNLFHL 618 Query: 243 V 243 + Sbjct: 619 I 619 >gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria pomeroyi DSS-3] gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria pomeroyi DSS-3] Length = 470 Score = 97.6 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 28/189 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F ++D ET G D Q VRV + P + + G++ Sbjct: 278 FAVFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLV--DPGRPIPPASTRVHGVS 335 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A +R+ HQF +I +N FD + R R D Sbjct: 336 DAMVAGAPDIVA-AARQFHQFARD---AVIVAHNAPFDIAFLRRHGPRCGLDW------- 384 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 +LD + + + L L G+ H A D Sbjct: 385 ---DHPILDTVLLSAVLF----------GASETHTLDALCDRLGVTIPAPLRHTALGDAQ 431 Query: 183 ATLALVWLI 191 AT ++ + Sbjct: 432 ATAEVLCRM 440 >gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 290 Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D ET G + D+ V+ D F+ D + V +T Sbjct: 123 QKDFVAVDIETTGLNTESDQILSIGAVKHDG--------TEFYRLIKQDIDVPKQIVELT 174 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP ++GV + + F I N RFD + + + + Sbjct: 175 GITPAMLDKEGVPLQDVLGELTDFV---GDVPIVGYNFRFDSAFLNREYRKCGMQELKNE 231 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 DLL V++ F + +KLQ + GIE+ H+A +D Sbjct: 232 IK------DLLPVVKRKEKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDA 272 Query: 182 YATLALV 188 AT L Sbjct: 273 RATKELA 279 >gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] Length = 1432 Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 128/476 (26%), Gaps = 49/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ F + +N++FD + R D Sbjct: 471 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 521 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + F + + + + P Sbjct: 568 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + S + + L + ++ ++ + Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D E + + + ++ + + + L Sbjct: 688 PPASYQTLIDDDLIKDEAELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLA 747 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + + +++ F D N + K Sbjct: 748 AQKSNPNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLADQ 796 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L IE +++ L + E G + + + + L +I Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852 >gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89516975|gb|EAS19633.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 453 Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 30/214 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D E ++ + P V +TGI Sbjct: 2 YAIVDVETTGGKFNEEGITEIAIYKFDGH-EIVDQFASL---VNPEKEIQPFVVKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R E ++RI + ++ +N FD R F R Y+ + + Sbjct: 58 NKMLARAPK-FYEVAKRIIEIMQ---GTVLVAHNANFDYRMLRIEFERLGYEFHTQT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L + GI + H A D AT Sbjct: 111 -----------------LCTVELAQQLMPEEESYSLGKLTRSLGIPITDRHRATGDALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + L ++ K + + K++ RK ++ Sbjct: 154 VKLFKMLMAKDSD--KTIISTSLKSETRKKVEPN 185 >gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] Length = 235 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 26/193 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV R ++ + + +TGIT Sbjct: 34 YVALDLETTGFYPNRCAITEIGAVRV-RGGRVVDQFQQL---INPLCPIPRQITALTGIT 89 Query: 65 PQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ++ +F + + T I +N+ FD + D Sbjct: 90 DAMVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRF---------LDYNTRH 140 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D M+ A P +L DL + GI H A +D Sbjct: 141 IAGCGFACADYDTMQISRALFPKQSH----------HRLADLIVRFGIADNEEHRALSDA 190 Query: 182 YATLALVWLIREK 194 T +R Sbjct: 191 IQTQQCFEWMRHY 203 >gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] Length = 870 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A +++++ E ++ E F ++ ++ Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPVK----DSYYVH 556 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + +F II +N+++D + RN ++ Sbjct: 557 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 614 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I +K +K+ Sbjct: 656 IATGELLVRAINKKIIPTSMERMALMSKH 684 >gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] Length = 256 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 27/197 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + + V+V ++ E + + PE+ I Sbjct: 5 LKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGKE----ESKTRRINPEMPIPPESTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + GYN+ RFD F R D Sbjct: 61 HGITDEDVKDCP-TFKEIAKSLATQIE--GCDLAGYNSNRFDIPLLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K NAH A+AD Sbjct: 114 -----------IDLNRRKFIDVQTIFHKMEQRTLSAAYKF-----YCDKSLENAHTAEAD 157 Query: 181 VYATLALVWLIREKKPK 197 AT ++ ++ P+ Sbjct: 158 TMATYEVLKAQLDRYPE 174 >gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01] Length = 200 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 51/192 (26%), Gaps = 29/192 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D+ET G R + V + ++ + P +T Sbjct: 1 MESIAVIDFETTGVSPTQARATEIG-VAIIEGGRIVDRYQSLM---NSGAWVPPFIEQLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + + + F + +N FD + R Sbjct: 57 GISNAMLRKAPPSD-QVMNEVADFI---GERPLLAHNASFDQKFWDAELARVRR------ 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 R + F+ + A S KL +L G + AH A AD Sbjct: 107 --------------RRLQPFACSLLLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALAD 152 Query: 181 VYATLALVWLIR 192 L + Sbjct: 153 AEMAANLTLHLF 164 >gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] Length = 953 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G V+ D Q +D E +E+ F +TGI Sbjct: 2 KFAVLDLETTGHSVS-DDILQVGLAVLDDNLEIVETYSSF---VRPTIEIPAFITQLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E + Q ++ +N+ FD + R Y + Sbjct: 58 DADMVADAP----ELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFI---- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D ++++R +Y T+++L + GI H H A +D A Sbjct: 110 --GRRLDTIELLRILY-------------PSITTYQLGAVTELFGIAHDQHHRADSDAIA 154 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L +K +L Sbjct: 155 TAELFAQSVQKLRQLPLLTLQ 175 >gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN] gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN] Length = 950 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 28/209 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G V DR Q V + + + I E + +TGI Sbjct: 16 YSVVDLETTGTSVKSGDRIIQVGLVMI-QDGKIINQFET---RINPLMKIPRSVQQLTGI 71 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + ++E + + + S I +N+ FD + + R D Sbjct: 72 TDKDVSKAPLLE-DIAPTLESLLS---GTIFVAHNVNFDFPFINHELTRVGRDPL----- 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R +D + A S++L+DL IEH + H A +D A Sbjct: 123 ----RISAIDTVTLSQIL----------MPTAKSYRLRDLTSYLHIEHDHPHSAVSDAEA 168 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212 T L+ + K L K +++ Sbjct: 169 TGVLLKDLLAKLRALPTVTLQTLVKMEMQ 197 >gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 1432 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 131/476 (27%), Gaps = 49/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + E +E + F + + +T IT Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + ++ +F + +N++FD + R + Sbjct: 471 DEMVGVAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F + + + + P Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + S + + L + ++ ++ + Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D E + + + ++ + + + + L Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDSHYVEPHEAIYRKILLA 747 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + + +++ F D N + K Sbjct: 748 AQKGNSNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDN-----TNKLADQ 796 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L IE +++ L + E G + + + + L +I Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852 >gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 284 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 93/291 (31%), Gaps = 34/291 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +FV+ D ET G DVA DR + A ++ + + E+ I Sbjct: 5 LTRNFVMLDLETTGLDVAKDRIIEIALIKT----TPTGEQSEYCKRVNPTIPISKESAEI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + E + + I F + + GYN+ +FD F R + Sbjct: 61 TGITDEMVATEPTFE-QLADEIAAFIGDAD--LGGYNSNKFDIPVLAEEFLRISHSFKI- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D+ ++ + + NAH+A D Sbjct: 117 ---NDRKFIDVQNIFHKMEQRTLA----------------AAYQFYCKEPMENAHNALYD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV---SGMFGASRSNT 237 TL + E+ P L + + + + ++ L + + Sbjct: 158 TKVTLDVFKAQLERYPDLAKSIPELADFSRQGNQEWHDFAGRLGKTKDGQVTYNFGKHKG 217 Query: 238 ALIAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287 +A VA P Y ++ + + L ++ + ++ + Sbjct: 218 KTVADVAESEPGYFGWMMD---ADFPLYTKQLLREEMERIKQKRKEKREDE 265 >gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] Length = 1528 Score = 97.2 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 64/500 (12%), Positives = 153/500 (30%), Gaps = 62/500 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+YD ET G D + A V++ + I+ F + + +T I Sbjct: 432 TYVVYDVETTGFSTNYDVIIEIAAVKI-KNGTIIDEFSDFA---NPHRKLSLKTIELTHI 487 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--NFYDSYRWS 121 +E + +R + CI+ +N FD + + R Sbjct: 488 LQSDVDNAPELE-DVMKRFKE---WSEDCILVAHNAAFDMGHLEQTYKRFNLGVCDNPVL 543 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +R + ++ D F L+ L+ ++ H A D Sbjct: 544 DTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDA 603 Query: 182 YAT----LALVWLIREKKPKLFEYLYDYRNKNQLRKL--IDIQNMTPLVHVSGMFGASRS 235 AT + ++ I + K + + +K KL + V Sbjct: 604 RATGQAFILMLRDILKLDIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVV 663 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 + ++ + PR + S + + G + ++ L +++L+ + Sbjct: 664 SQSMTCDLYGQPRIRRSYLQAHREGLLIGSSCVNGEVWESALNKPYEDLQE-------KA 716 Query: 296 HLNKCPILMPIDYCKKEHFER-WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + P + + + T+++ L A + + + Sbjct: 717 KFYDYLEVQPPEVYSHLIDQNSKEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNRED 776 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + Q+Y + + +++ +++ +D + F L E Sbjct: 777 KLYRQIYTRTPMIGGGRHP--LNHPDIKEIPSMHFRTTDEMYHDFSF----------LDE 824 Query: 415 KEKQDW--------------LEHRKKMLTRSR--------IEEYKNKLQSL----SGEYK 448 ++++ ++ K L I K++L + + E+ Sbjct: 825 AKQKEIIVTNPNAIADSCEMIKAIKDELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWY 884 Query: 449 GDEGKEGLINALYEYLQWVI 468 G+E + +++ L + L +I Sbjct: 885 GEELPQYVLDRLIKELNSII 904 >gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126] gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126] Length = 465 Score = 97.2 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 31/221 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G A +R + A + D + + ++ + + P+ I GI Sbjct: 2 YAIVDIETTGGYAARNRICEIAIILHDGE-KVVKEYQTL---INPERHIPPQLSAIHGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q E ++ IH+ I +++ FD + + F Y+ Sbjct: 58 DQMVEDAPK-FYEEAKTIHELLE---GNIFVAHSVNFDYSFVKAAFQDLGYELKLKK--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L ++ GI+ + H A D AT Sbjct: 111 -------LCTVRLSRKIF----------PGLKSYSLGNICENRGIKINDRHRAFGDAIAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 L + + K + +N+ V Sbjct: 154 AELFTQLVQHDTD---NHIQKSLKKNAAVVNIPENLERTVF 191 >gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 1398 Score = 97.2 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 30/230 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+++D ET G +D+ + V++ E IE + + + V +TG Sbjct: 382 QRFIVFDLETTGLSKYIDKITEIGAVKI-ENGEIIEVFNEL---VNPEKMIPQKVVELTG 437 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + ++ + +F N FD + + S+ Sbjct: 438 ITNEMVMDKPKID----EVLPKFLEFSKDSYFVGQNTDFDIGFIKEACDNL-------SY 486 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + RA++ F L LA G+ N H A D Sbjct: 487 KFEPIYLDTLPMARAVF-------------PTMGRFSLDKLAKKLGVGPFNHHRASDDAM 533 Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMF 230 T + L + K K + + N + + L +N + ++ Sbjct: 534 TTAKIFIKLFEKIKDKNKDLSLEKINSIKTKWPLARHENFSSIIFAKNYH 583 >gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM 18228] gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM 18228] Length = 258 Score = 97.2 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 80/257 (31%), Gaps = 30/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + I Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ESKTMRINPGMHIPEASSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + I G+N+ RFD F R D Sbjct: 61 HGIYDADVADCP-TFKEVAKDIARDLE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A+AD Sbjct: 114 -----------IDLTRRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNTA 238 AT ++ + P + E ++ ++ + +F + Sbjct: 158 TRATYEVLKAQLDHYPDVLENDINFLSEYSSYNKNVDFAGRIVYDDKGVEVFNFGKYKGM 217 Query: 239 LIAPVAW-HPRYKDSVI 254 ++ V P Y V+ Sbjct: 218 PVSEVLQRDPGYYGWVL 234 >gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] Length = 1528 Score = 97.2 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 63/500 (12%), Positives = 153/500 (30%), Gaps = 62/500 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+YD ET G D + A V++ + I+ F + + +T I Sbjct: 432 TYVVYDVETTGFSTNYDVIIEIAAVKI-KNGTIIDEFSDFA---NPHRKLSLKTIELTHI 487 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--NFYDSYRWS 121 +E + +R + C++ +N FD + + R Sbjct: 488 LQSDVDNAPELE-DVMKRFKE---WSEDCVLVAHNAAFDMGHLEQTYKRFNLGVCDNPVL 543 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +R + ++ D F L+ L+ ++ H A D Sbjct: 544 DTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDA 603 Query: 182 YAT----LALVWLIREKKPKLFEYLYDYRNKNQLRKL--IDIQNMTPLVHVSGMFGASRS 235 AT + ++ I + K + + +K KL + V Sbjct: 604 RATGQAFILMLRDILKLDIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVV 663 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 + ++ + PR + S + + G + ++ L +++L+ + Sbjct: 664 SQSMTCDLYGQPRIRRSYLQAHREGLLIGSSCVNGEVWESALNKPYEDLQE-------KA 716 Query: 296 HLNKCPILMPIDYCKKEHFER-WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + P + + + T+++ L A + + + Sbjct: 717 KFYDYLEVQPPEVYSHLIDQNSKEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNRED 776 Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414 + Q+Y + + +++ +++ +D + F L E Sbjct: 777 KLYRQIYTRTPMIGGGRHP--LNHPDIKEIPSMHFRTTDEMYHDFSF----------LDE 824 Query: 415 KEKQDW--------------LEHRKKMLTRSR--------IEEYKNKLQSL----SGEYK 448 ++++ ++ K L I K++L + + E+ Sbjct: 825 AKQKEIIVTNPNAIADSCEMIKAIKDELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWY 884 Query: 449 GDEGKEGLINALYEYLQWVI 468 G+E + +++ L + L +I Sbjct: 885 GEELPQYVLDRLIKELNSII 904 >gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I] gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822] gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50] gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis] gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I] gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50] gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS] Length = 244 Score = 97.2 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 33/197 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61 +I+D ET G D A R + V E + D DPEA+ + Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCV------EIVNRMVTGNNLHLYLNPDRDSDPEALAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + AE + + F + + +N FD + R D Sbjct: 58 GLTTEFLADKPR-FAEVAEQFLAFIADAE---LIAHNAAFDVKFFNAELQRIGRDPLNTH 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 +N D L R+++ L L GI H H A Sbjct: 114 CEN---IVDSLLHARSLHPG--------------KRNSLDALCDRYGISNAHRTLHGALL 156 Query: 180 DVYATLALVWLIREKKP 196 D + + + Sbjct: 157 DSQLLAEVWLAMTRGQD 173 >gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1] gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1] Length = 1436 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 57/474 (12%), Positives = 127/474 (26%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + R Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P + Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ L + ++ ++ + Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E + + + ++ + + +D + + Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D N E + Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDNTNKI--ADELSE 803 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L IE +++ L + E G + + + + L +I Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856 >gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] Length = 304 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 53/199 (26%), Gaps = 27/199 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D ET G D + + ++ + + +T Sbjct: 19 PDDYTVLDIETTGLSPQNDYITEISAIKYRNNRRV-DEFSSL---VKPELSIPYYITRLT 74 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI ++ E F + + I GYN + + N Y Sbjct: 75 GINDAMVADAPAID-EVILSFMDFLA--DDIIAGYNVAFDLSFIAE-----NLAGHYAKR 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N D +DVM+ + +K +A I AH A D Sbjct: 127 LAN-----DYVDVMKLAQ----------NELPFLGRYKQTAVAEYFNIATAGAHRALVDC 171 Query: 182 YATLALVWLIREKKPKLFE 200 ++E + Sbjct: 172 NICNGCYQKLKELAVADYH 190 >gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 457 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D + + ++ + P V +TGI Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGE-KVVDQFISL---INPERPIQPFVVGLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + + CII +N +FD R F R ++ Sbjct: 58 NEMLRNAPK-FYEVAKRIVEITTD---CIIVAHNAKFDYRILRTEFKRLGFEF------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L A GI + H A D AT Sbjct: 107 -------------QRKSLCTVELSKKLIPDMPSYSLGKLVRALGIPLSDRHRANGDAQAT 153 Query: 185 LALVWLIREKKPK 197 + L ++ K K Sbjct: 154 VKLFKMLLAKDTK 166 >gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] Length = 861 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 25/192 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D DR Q A +R+D+ +IE E F + + G T Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERF---INPGKSVG-TSQLVHGFTD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G +F N II +N+ +D + R+ ++ Sbjct: 551 AYLAEHGESPKVVLEAFKEF---SNNRIIVGHNVNYDISILSHELARHNLGEPQFK---- 603 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL L+ I H H+A D+ AT Sbjct: 604 -AVYDTLDIFRRFYPTLEN-------------HKLGFLSKYFPINHTPTHNAMDDIIATG 649 Query: 186 ALVWLIREKKPK 197 L+ + Sbjct: 650 QLLIYAVRENIM 661 >gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] Length = 867 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 103/312 (33%), Gaps = 37/312 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +++D E+ G DV D Q A +R++R E I+S E F KP I G Sbjct: 499 DNIIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFL-KPKKSVKNS---EHIHG 554 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + G + + +F +I +N+++D + +R Sbjct: 555 FSDEFLKEKGEDKETVIK---EFLRFSENAVIVGHNVQYDINILSSEIHRLNL-----GK 606 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y + KL L+ E++ +HDA D+ Sbjct: 607 SKFLAFYDTLDIYRRFY-------------PNLVNHKLNTLSDIFKTENIPSHDAMDDIL 653 Query: 183 ATLALVWLIREKK-----------PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 AT L+ + + + + ++ + + M P V Sbjct: 654 ATKDLLIRALKIDIIPTSMERIAGMSKYIKAFSFISEKLNDFFKETEEMRP-CEVVNYIV 712 Query: 232 ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291 + L + + L D+ L + + L + Sbjct: 713 QHFNLKTLYPGEEGKGKIERMRDFYALLRDIDDKNKGSRDSLFDIIKLTSLSNGELESLI 772 Query: 292 IKEVHLNKCPIL 303 +K ++ PI+ Sbjct: 773 LKRTKKSRIPII 784 >gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 228 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 59/231 (25%), Gaps = 30/231 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + YD ET G + DR + A + + E F EA I Sbjct: 1 MTALIFYDTETTGTQIDKDRIIEIAA------FNNVTK-ESFVTYVNPKIPIPEEASKIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E ++ F ++ +NN FD R+ + Sbjct: 54 GITTSTVASAP-DFPEAYKQFRDFCGN-EAVLVAHNNDGFDFPLLEKECRRHSLEPLT-- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D ++ + PD LQ L G AH A DV Sbjct: 110 -------LRTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMF 230 + + + + PL V + Sbjct: 153 ITLHDVFSALIGDLSAEQVLALMEESCHPKTFKMPFGKYKGKPLTEVPASY 203 >gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2] gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2] Length = 245 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 56/214 (26%), Gaps = 36/214 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G D F +RV I E F+ + +TGIT Sbjct: 61 VVFDLETTGFSAQHGDEILSFGAIRVVGD--VIMEKEQFYTLVNPRTEIPEQITRLTGIT 118 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +H F S ++ + D + ++ Sbjct: 119 REMTDGAPP----LMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWK------TSKVQL 168 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + + + + + L +L I H A D T Sbjct: 169 THRVLDTMMLAKWLEPQQHQT------------YSLDELLAYQSIPIEGRHHALEDAKMT 216 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 L + K + L D+ Sbjct: 217 AKL-----------WVAYVQEMLKRNVTNLADVY 239 >gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] Length = 927 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 29/210 (13%) Query: 1 MTNH-FVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + + D ET G V R Q ++ + E+ + K Sbjct: 1 MKKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGD-QITETYQT---KINPQMTIPKRIS 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT Q+ + A+ + +I+Q + + +N+ FD + R+ Y Sbjct: 57 RLTGITDQQVRQAPK-FADVADKIYQKLA---GTVFVAHNVNFDFPFLNRELVRSGYPEL 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +D + ++L+DL IEH + H A Sbjct: 113 ---------DLKAIDTVTLSQVLFS----------RTRGYRLRDLTNYLHIEHDDPHSAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNK 208 +D AT L I+ +L + K Sbjct: 154 SDAVATAHLFLKIKAALSELPIVTLEQLVK 183 >gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] Length = 1435 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 65/476 (13%), Positives = 129/476 (27%), Gaps = 49/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + + +E + F + + + +T IT Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGKVLERFDKF---INPHHPLSDQTINLTSIT 473 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ F + +N++FD + R + Sbjct: 474 DEMVGAAD-DEDVVIRQFKDF---YGDMPLCGHNVQFDVGFVNAALRRAGLEEI------ 523 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L L + + H A D AT Sbjct: 524 KQPVVDTLEVSRLLH-------------PEQTRHTLDSLVKKYDVVLEHHHRANQDAEAT 570 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K F + + + + P+ + Sbjct: 571 GYLMYKLLDAFKKKFGEDNLGKLNDFAKHGETFKRARPMHMTILAKNQAGLKNMYKLVSI 630 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S + + L R ++ ++ L Sbjct: 631 ANTKDFYREPRTPKSALRKYHEGLLYGSGCWRGDVFIAMMQKGYDTAREKAKFYDYLELQ 690 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P + + D E LT + + + + A Y P+ + + Sbjct: 691 PPATYSQLIADGLIKDKDELEEILTNIYKLGKELKKPVVADSDAHYVDPHEKIYRTILIS 750 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419 Q T E L D N + K + Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQ-EMLDAFAFLGEDA-----AKEIVIDN-----TNKIADE 799 Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 E K L I+ +++ L + E G + + + + L +I Sbjct: 800 LEEIAPIKDGLYPPHIDNADQEMKDLTYNKAYELYGKPLPKIVKDRIDLELNSIIS 855 >gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 317 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 24/211 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET G DR + AG++V R + + P D+ +P + G Sbjct: 33 DDYTMLDIETTGLSPYRDRITELAGIKV-RNGKVVAEYSQLVKYPKDNKVPR-FITKLNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I L +G+ E F I+GYN NF + Sbjct: 91 IDEALILANGMPVKEAITEFRNFI--GGDVIVGYNVNFDL----------NFIYDLCEKF 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +DV+ F + +L D GI AH D Sbjct: 139 QLKKLSNNYIDVLHFSRVFF----------KKESHNRLLDCIRRLGISESEAHRGLKDSL 188 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 T A+ + R++ K+ + Sbjct: 189 DTKAVFDIYRKQFTPEMLNEVKDSLKSCVLT 219 >gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 453 Score = 96.8 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 117/401 (29%), Gaps = 38/401 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D + ++ + P V +TGI Sbjct: 2 YAILDIETTGGQFNEEGITEIAIYKFDGH-QIVDQFISL---VNPEIPIQPFVVKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + CII +N FD R F R YD + Sbjct: 58 NAMLVSAPKFH-EVAKRIVEITKD---CIIVAHNTVFDYRILRTEFSRLGYDFQAKT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + S+ L L A GI N H A+ D AT Sbjct: 111 -------LCTVELAKIL----------IPEQPSYSLGKLVRALGIPITNRHRAEGDALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRN------KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 + L ++ +K + + +L +I+ V+ + Sbjct: 154 VKLFKMLLDKDLEKIIVKEQIKTEITKGIAPKLLNIIESLPNKTGVYYIHKENGTIIFIG 213 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + + I + + + + L E + + ++ Sbjct: 214 KSRNIKKRVNQHFTGITKSALKIQQEVFTVTYQETGSELIALLKETEEIKRNRPIYNRIS 273 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 YC+K+ + ++ + T+L++ N + +SQ Sbjct: 274 PKTHFPVAIYCEKDANGYLNLKLQKFDGRKKEITAYTSLQE----GKNNLFRITSQYNLC 329 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 Q G + +I + + ++R+ E Sbjct: 330 QKLTGLYETKTHCFQQKINECDGACIGKITPQEYNKRVQEF 370 >gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cytotoxicus NVH 391-98] Length = 929 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EGGEILEIFSSF---VNPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + + +N+ FD + + + Y Sbjct: 57 ELTGIDENLVKQAPL-FQDVAPMIVELLQGAS---FVAHNVHFDWNFLKEELKQAGYADI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLTQIEKLPLVTLQ 179 >gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris NZ9000] Length = 277 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 25/193 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V++D+ET G + Q V+ D +++ E + Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYV--STEITQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI P L +E E F ++ +N FD + Sbjct: 59 TGIKPADLLNQPTIE-EILPDFLDFIK---GHLVVAHNAPFDISFLYQAIIDC------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + + +S+ L++ + + +HDA D Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155 Query: 181 VYATLALVWLIRE 193 T L +++ Sbjct: 156 CLITAKLYQYLQK 168 >gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 57/204 (27%), Gaps = 28/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MTN ++ D ET G + LD+ + A +RV E + Sbjct: 1 MTNSYIALDLETTGLEARLDKITEIAALRV-EDGRVEERFVTL---VNPGRQLGERITAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT V+E I + +NI FD + + + D Sbjct: 57 TGITDDMVKDAPVIE----DTIGDVVRFCGNLPLLGHNILFDYAFLKRAAVNSGLDF--- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R L + AH A+AD Sbjct: 110 ----EREGIDTLGICRLF-------------MPEDVKRNLTCACSFYEVSQSAAHRAQAD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 A L ++ + + + Sbjct: 153 AEAAHGLYQVMMARHGEEHPEAFA 176 >gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 217 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 29/191 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-VFFCKPADDYLPDPEAVFITGI 63 F+ +D ET G +D+ + VR E +F P A + GI Sbjct: 15 FIAFDLETTGTVPGVDQIVEIGAVRF-----IDGQPEAIFATLIDPLRPIPPGASAVNGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + +++ +F ++ +N FD + ++ + Sbjct: 70 SDDMVKGKPLIDT-ILPAFAEF---CGEDVLVAHNAPFDSQFLIADIKKH------ETTA 119 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R ++ G ++KL L I N H A+ D Sbjct: 120 PRGVILDSLPIARKVF-------------PGLPNYKLGTLVQHLKIPTSNFHRAEEDATY 166 Query: 184 TLALVWLIREK 194 + + ++ Sbjct: 167 LGHMFSQMMKR 177 >gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 375 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 47/189 (24%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSPAEHRITEIGVVEIGP-----GHMSTWTTLVNPGQPIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + + F + + +N FD + R F R Sbjct: 70 DDMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L ++ A + L L G+ H A AD Sbjct: 121 -----DVLCTVKLSRALF----------PRESRHGLDALIERYGLVPAARHRALADADLI 165 Query: 185 LALVWLIRE 193 + Sbjct: 166 WQFWRQLHT 174 >gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] Length = 205 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 26/195 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + A ++V+ E KP+ ++P+ +TGI Sbjct: 10 TFTVVDLETTGLNPKTSEIIEIAAIKVEGN-VITEKFHTL-VKPSIGFIPE-HITKLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + F II +N +FD + ++ Sbjct: 67 TNPLVIDKPKIE----QVFPHFLEFTKNSIIIAHNAKFDISFLNEASFQL---------T 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++ + PD S L +LA I + H A AD Sbjct: 114 GKLIQNPVICTLVLANRLFPDL----------KSKSLTNLAYHFNIPYHRKHRALADAEV 163 Query: 184 TLALVWLIREKKPKL 198 T L E Sbjct: 164 TYELFKKFVEYLQNY 178 >gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 214 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 65/227 (28%), Gaps = 31/227 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + + V+ D+ET G DR + V V E ++ + + Sbjct: 5 LADSVVVLDFETTGLSPQYGDRAIEIGAVLV-EHGEIVDRFQKLM---NPGFRISSFIEG 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT + E E F + N I +N FD + R Sbjct: 61 YTGITNEMLKGQPCCE-EVMAEFSGFIAGRN---IVAHNASFDRRFLDFELKRA------ 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178 A + + + +LQ L G E + H A Sbjct: 111 --------------KRVYEGACCCSLLVSRRIYQDSPNHRLQTLVTHAGIPETGSFHRAL 156 Query: 179 ADVYATLALVWLIREKKPKLFEY-LYDYRNKNQLRKLIDIQNMTPLV 224 AD T L + ++ + + + + L K+ + L Sbjct: 157 ADAEMTALLWMSMIDRIRRQYGISAITFDQLSDLSKIDKLYTHRYLT 203 >gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] Length = 208 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 27/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + ++ +K E I GIT Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVP-GKKGEEFSSL---IDPGCPIPASGRSIHGIT 67 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 VE E + F + +N FD + + + + Sbjct: 68 DDMVAGQPRVE-EVIAGLLDFV---GPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMT--- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D L + R + G S+ L+ L+ + H A D + T Sbjct: 121 ---VFDTLPLSRVAF-------------PGLRSYSLESLSDFFEFKEGVHHRALCDCWYT 164 Query: 185 LALVWLI 191 L Sbjct: 165 QQLFTRF 171 >gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 927 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 29/210 (13%) Query: 1 MTNH-FVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + + D ET G V R Q ++ + E+ + K Sbjct: 1 MKKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGD-QITETYQT---KINPQMTIPKRIS 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT Q+ + A+ + +I+Q + + +N+ FD + R+ Y Sbjct: 57 RLTGITDQQVRQAPK-FADVADKIYQKLA---GTVFVAHNVNFDFPFLNRELVRSGYPEL 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +D + ++L+DL IEH + H A Sbjct: 113 ---------DLKAIDTVTLSQVLFS----------RTRGYRLRDLTNYLHIEHDDPHSAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNK 208 +D AT L I+ +L + K Sbjct: 154 SDAVATAHLFLKIKAALSELPIVTLEQLVK 183 >gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] Length = 934 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDEDLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179 >gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sibiricum 255-15] gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sibiricum 255-15] Length = 937 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 28/206 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FV+ D ET G + D + V V + E F P Sbjct: 1 MEKKFVVVDLETTGHSIKSGDEMIEIG-VAVIEDGQITERLSAF---VRPQKPIPPFISQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + + A + R+ Q + + +N++FD + Y Y Sbjct: 57 LTGITDEDVAQA-ESFATIAPRVLQLL---DGGVFVAHNVQFDLTFLNEALEEEGYLPY- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +++ R A S L L A + H AH A + Sbjct: 112 -----TGPVIDTVELARI-------------LLPTAESHSLSHLTEALQLTHHEAHRAGS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205 D AT L+ + + L + Sbjct: 154 DAEATAELLLHLLTRLQDLPLDTLRH 179 >gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 1517 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 54/382 (14%), Positives = 98/382 (25%), Gaps = 36/382 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G D+ + V++ + + +VF + +T I Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLRE-GKICDRMDVF---VNPEIPIPFRITQLTSIDD 548 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + +E + +F S +I +N FD + R R Sbjct: 549 SMVIGERTIE----ELLPEFLSFCGDAVIVAHNADFDTGFIRENARRLGLSYDPT----- 599 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++D + P + FKL +A GI +N H A D AT Sbjct: 600 -----VVDTVGLSRLLLPKLNR----------FKLDTVAKELGISLLNHHRAVDDAEATA 644 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 + + + L P H + L ++ Sbjct: 645 EIYQKELSLLRERGVKKLSEIDSL-LFDYEANVRKLPSFHCIILAKNDIGRINLYRLISE 703 Query: 246 -HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHLNKC 300 H +Y S R + L L+G + + Sbjct: 704 SHLKYFRKNPKIPKSLLKRYREGLILGSACAAGELFQAILRGAEEEQLLSIASFYDYLEI 763 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 L + N +L L A + Y D+ ++ Sbjct: 764 QPLGNNAFMLGSDRYSAKSREDLIAYNRKILSLGEQLGKPVCATCDCHYIEPEDDIYRRI 823 Query: 361 YD--GFFADVDRQIMDRILRTA 380 F + + T Sbjct: 824 IMAGRGFEEEESDASLYFRNTE 845 >gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941] gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM 9941] Length = 560 Score = 96.8 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 48/172 (27%), Gaps = 30/172 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + +++ R ++ +P +TGIT Sbjct: 33 YVVFDLETTGSSAREGGITELGALKLVR-GRVVDRFSTL---VNPGRPIEPFVARLTGIT 88 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R +F ++ +N FD + + Sbjct: 89 DEMVSGAP-PAREVIPRFEEF---AEGSVLVAHNAGFDCSFLAAARGGRGLPN------- 137 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +LD +R G ++L L G+ H Sbjct: 138 -----PVLDTLRLARLL----------VPGLRRYRLSALVSHFGVRQAPNHR 174 >gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 290 Score = 96.8 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D ET G + D+ V+ D F+ D + V +T Sbjct: 123 QKDFVAVDIETTGLNTESDQILSIGAVKHDG--------TEFYRLIKQDIDVPKQIVELT 174 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP +DGV + + F I N RFD + + + + Sbjct: 175 GITPAMLDKDGVPLQDVLGELTDFV---GDVPIVGYNFRFDSAFLNREYRKCGMQELKNE 231 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 DLL V++ F + +KLQ + GIE+ H+A +D Sbjct: 232 IK------DLLPVVKRKEKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDA 272 Query: 182 YATLALV 188 AT L Sbjct: 273 RATKELA 279 >gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] Length = 540 Score = 96.8 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 52/188 (27%), Gaps = 25/188 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + VR+ R ++ P +TGITP Sbjct: 20 VVVDLETTGLGAG-AEITEIGAVRI-RDGAVVDEFSSL---VKPSRPIPPFITSLTGITP 74 Query: 66 QKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A ++ ++ ++ +N FD + R R Sbjct: 75 AMVADAD-PIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPR---- 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R + KL +A G V H A D A Sbjct: 130 --VRVVDTLALAR-----------LALPRPLVRNHKLGTVASYFGTATVPEHRALGDARA 176 Query: 184 TLALVWLI 191 T ++ Sbjct: 177 TAEILLGF 184 >gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] Length = 934 Score = 96.8 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPVFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115] gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) [Deinococcus deserti VCD115] Length = 202 Score = 96.8 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 33/193 (17%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPAD---DYLPDP-EA 57 + V++D ET G D + +RV + E E +P + + L P A Sbjct: 2 NVVVFDLETTGLSPERDGIVEIGALRV-VNGQVHEHLRYETL-VRPTNAAGERLMIPWHA 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + GI+ + +E E +F + +N+ FD + R R Sbjct: 60 QRVHGISNEMVRSAPTIE-EVLPEFLEFV---GDSAVVAHNVGFDCGFMRAQARRLGM-- 113 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAH 175 + A + L LA G+ H Sbjct: 114 -----------------VWAPAGEHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRH 156 Query: 176 DAKADVYATLALV 188 + DV T Sbjct: 157 RSFGDVQVTAHAY 169 >gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 597 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 50/188 (26%), Gaps = 22/188 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F++ D ET G L + V+V R I +TGI Sbjct: 46 TFLVVDVETTGEKPGLHSLTEIGAVKV-RGGTVIGEFGSL---VNPGVPIPAFITRLTGI 101 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E +F I +N FD R Sbjct: 102 TTGMVATAP-SLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGLAFP----- 155 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + R ++ D + KL LA +H A D A Sbjct: 156 -NRKVIDTVKLSRRVF-----------MKDEVPNHKLSTLARFVNATISPSHRALDDARA 203 Query: 184 TLALVWLI 191 T+ ++ I Sbjct: 204 TVDVLHAI 211 >gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] Length = 286 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 45/308 (14%), Positives = 95/308 (30%), Gaps = 40/308 (12%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N+FV+ D ET R + V+ + ++ + +T Sbjct: 17 NNFVVLDIETTAFSPVKGGRITEIGAVKY-IDGKVVDKYSQL---INPEMKIPANITKLT 72 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT V + QF + ++ +N +FD N + + + Sbjct: 73 GITNDMVQGKPV-YGQVLPVFQQFI---DGFLVVAHNAKFD---------WNRFLLFYFE 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + ++LD + F P+ + +KL D G + N H A D Sbjct: 120 KVGIHPKNEVLDSVAVFQHFCPNKGK----------YKLDDFCTTFGYLNKNRHRAYEDA 169 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT + ++ + + + K ++ + V + S+T L Sbjct: 170 EATGYCLLELKRRFASEIPEVEEEPIK--VQSVQKSSQPEIFVKRVKYWEKKVSSTKL-- 225 Query: 242 PVAWHPRYKDSVIGCNLSGDM-RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 K + N V+ D+ + + + + + ++ ++LN Sbjct: 226 -------MKRQYVNINDKKKYGTVYFDIPTKTWYNNNYPGEVDFEVVNEKVLRFLNLNST 278 Query: 301 PILMPIDY 308 L Sbjct: 279 IELCSFKN 286 >gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] Length = 259 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 27/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N + +D ET G D+ DR + + ++V + E + + PE+ I Sbjct: 5 LKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSE----ECKTRRINPERSIPPESTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + ++ + Q+ + G+N+ RFD F R D Sbjct: 61 HGITDEDVKDCP-PFRSVAKSLAQWIE--GCDLAGFNSTRFDVPMLVEEFLRAGVDIDLR 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + NAH A+AD Sbjct: 118 HRKL----IDVQTIFH----------------KMEPRTLEAATRFYCNRTLENAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 AT + ++ E + Sbjct: 158 TRATYDVFKAQLDRYEGTLENDMAF 182 >gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] Length = 318 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 69 NYRVSDAPTIE-EVLPLFLAFL---HTNVIIAHNASFDMRFLKSNVSMLGLPEPQN---- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A + KL+ L GI +H+A D Sbjct: 121 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164 Query: 185 LALVWLI 191 A+ Sbjct: 165 AAVYQKC 171 >gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563] gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563] Length = 314 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 29/220 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D ET G + D + + +R+ +++ T +P +T Sbjct: 22 PKDYVMIDIETTGLKPSNDEILELSAIRIRDH--QMDRTFSTLVQPN--RPISGFITNLT 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + +E + F I+GYN + + Sbjct: 78 GISNHMVMTAPPIE-QAIPEFLDFIQED--IILGYNVNFDLSFIYDTAVNLYNFP----- 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D LDV+ + + KL +A GI + AH D Sbjct: 130 -----VRNDYLDVLTIARKLVTE----------TPNHKLGTMAQFYGISYEGAHRGLTDC 174 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 Y T+ + + + ++++ + KN + + + Sbjct: 175 YITVEVYNQLFNQAKQVYQS--EQDFKNDFYRRAYPKQIK 212 >gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 769 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 27/186 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + + D Q R+ + + E F + PE+ I G Sbjct: 578 SYTVFDTETTGLNPSQGDEIIQVGATRI-LNGKLL-RAESFEQLVDPERPLAPESAKIHG 635 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + H F + ++ +N FD + + Sbjct: 636 ITSEMLRGQPTID-KVLPAFHAFAAD---TVLIAHNAAFDMRFL----------QLKEEQ 681 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++D + S +L+ +A G+ V H A D Sbjct: 682 TGLRFDHPVIDTLLLSAVV----------HPNQESHRLEAIAERLGLTIVGRHTALGDAI 731 Query: 183 ATLALV 188 T + Sbjct: 732 VTAEVF 737 >gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] Length = 934 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDEDLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179 >gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] Length = 934 Score = 96.4 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPVFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179 >gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 702 Score = 96.4 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 H+V++D ET G + D Q A VR+ F PE++ G Sbjct: 508 HYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGE--TFNMLVDPKRPIPPESIPFHG 565 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ + F S ++ +N FD + + Sbjct: 566 ITDAMVAGKPTIDT-VLPQFRSFVS---GAVLVAHNAAFDLKFLK-------MKERAAGV 614 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + R L +A GI V+ H A D Sbjct: 615 TFDCPVLDTMLLSRM-------------LLGNDGDHTLDGIAQRLGIAVVDRHTALGDSL 661 Query: 183 ATLALVWLIREKKPKLFEYLY 203 T A+ + E Sbjct: 662 VTAAVFLRMIEMLRDQGVRTL 682 >gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes] Length = 1465 Score = 96.4 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 46/399 (11%), Positives = 93/399 (23%), Gaps = 36/399 (9%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G + Q A ++ + +E + F + +TGIT + Sbjct: 431 DVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGITDKHL 486 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + F I+ +N FD + + R+ Sbjct: 487 QGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------KITQPV 536 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L+ R +Y L L + + H A D AT L+ Sbjct: 537 IDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLL 583 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 ++ + + + L + + + + Sbjct: 584 FIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVSLSNIK 643 Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDY 308 Y + V + + L L + + +MP Sbjct: 644 YFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEIMPPAI 703 Query: 309 CKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 + D + + L ++ L + + L Sbjct: 704 YQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIVRSLGQ 763 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 G + + L + ++ L E F Sbjct: 764 GAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799 >gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str. C58] gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str. C58] Length = 232 Score = 96.4 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G + LDR + G+ + + T + P +D P+A+ + GIT Sbjct: 4 IIFDTETTGLESKLDRVIEIGGIELINHF-PTGRTLHLYISP-EDRKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + AE +I +FF + +N FD + F R + Sbjct: 62 EFLKDKPK-FAEVIDQIREFF---DGARWVAHNATFDMGFINAEFARLGIEPVSAE---- 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R P+ L L GI+ H H A D Sbjct: 114 -LVTDTLSLARRKNPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 184 TLALVWLI 191 + + Sbjct: 159 LAEVYIEM 166 >gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 96.4 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 28/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++V+ D+ET G DR Q A VR R E + F + +TGI Sbjct: 9 NYVVIDFETTGFHPYNDRIIQVAAVRY-RNHELADQFVSF---VNPERSIPSRITSLTGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + V E F I +N FD + ++ R + Sbjct: 65 TNYRVSDAPTV-QEVLPLFLAFL---GNDTIVAHNASFDMRFLKSNMSR---------FQ 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G ++D + + A +FKL+ L GI +H+A D Sbjct: 112 LGEPNNKVIDTVLLAKKY----------MKHAPNFKLETLKRMLGIRLS-SHNALDDCIT 160 Query: 184 TLALVWLIREKKPKLFEYLYD 204 A+ + + L Sbjct: 161 CAAVYQQCANMQGDGRKSLKK 181 >gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 659 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 52/188 (27%), Gaps = 29/188 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G D DR Q AG+R+ R E + P + + GIT Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTL---VDPGRPIPPASTAVHGITD 510 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + F ++ +N FD + R Sbjct: 511 AMVAGAP----DMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAV----------PETGA 556 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYA 183 + +LD + L L G I H A D A Sbjct: 557 HFDNQVLDTVLLSAMLWGQSAP----------HSLDALTERLGIVIPPEARHTAMGDARA 606 Query: 184 TLALVWLI 191 T + Sbjct: 607 TAEAYLRL 614 >gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] Length = 240 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 59/206 (28%), Gaps = 36/206 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPE 56 +V+ D ET G D D+ + +++ R++E++ + Sbjct: 3 PQTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHT-MVALEEGRDLPEF 61 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT + E + + F I+ N FD + Sbjct: 62 ITNLTGITEEDLEDAPE-EWDALDELQNFI---GDAIVVAQNAPFDLSFI---------- 107 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 SR D+ + S L+D+ GI H Sbjct: 108 ----------SRGDIEP------ERFYCTRAMARFVEPELSASLKDVTKRIGISLDGHHR 151 Query: 177 AKADVYATLALVWLIREKKPKLFEYL 202 A DV AT+ + + + Sbjct: 152 ALNDVEATIEVFRRYLPRVVDEYNDF 177 >gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 710 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 28/172 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G + + +R + V++ E +++ + +TGI+ Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKI-VAGEVVDTYQTL---INPQRRIPATITRLTGIS 598 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + RI F + +N+ FD + + F R R Sbjct: 599 DDMVADAPL-FVEVAERIASFTDE---AVFVAHNVNFDYGFIKQEFARLELPFKR----- 649 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 L +R + + G S+ L +L I+ H Sbjct: 650 -----PKLCTVREMRKV----------NPGLPSYSLANLTRHFDIKMEQHHR 686 >gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] Length = 206 Score = 96.4 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 56/204 (27%), Gaps = 27/204 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR + V +D E + P AVF+ G+T Sbjct: 3 YAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSL-VNPLRGM----GAVFVHGLT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ +I FS + +N FD + F R Y Sbjct: 58 DADVADAP-TLADLLPQIRGLFS---GRALVAHNATFDVGFLNASFARAGYG-------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 M + ++ L A G+ H A AD + Sbjct: 106 ----------MHVPREATVCTMELSKIYLPPGRHGLAAAAERAGVATAKRHRALADAHTA 155 Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208 L+ + Y ++ Sbjct: 156 AGLLRHYLNAEADGVRYAERAFSR 179 >gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803] gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803] Length = 457 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 28/191 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D Q + ++ + P V +TGI Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGQ-KVVDQFISL---VNPEQPIQPFVVNLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++RI + CI+ +N +FD R F R ++ Sbjct: 58 NDMLKNAPK-FYEVAKRIVEITED---CILVAHNAKFDYRILRTEFRRLGFE-------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G S+ L L + GI + H A D AT Sbjct: 106 ------------YERKSLCTVELSKKLIPGLPSYSLGKLVRSLGIPLSDRHRAAGDAQAT 153 Query: 185 LALVWLIREKK 195 + L ++ K Sbjct: 154 IKLFKMLLAKD 164 >gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] Length = 231 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 75/252 (29%), Gaps = 27/252 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 +E + +F I+ +N FD + + + N+ Sbjct: 57 KGSDPIEV----VLQRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAKNAV 106 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L++ R +Y + +L L I H A D AT L Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 W + + ++ + Y + + + + P A + Sbjct: 154 WKLIKDAKEMHDIEYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213 Query: 249 YKDSVIGCNLSG 260 Y V S Sbjct: 214 YFYRVPRIPRSQ 225 >gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI] gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar anthracis str. CI] Length = 315 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A + KL+ L GI +H+A D Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 463 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 53/190 (27%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G DR + +R + P +TGIT Sbjct: 8 YVLLDLETTGVTPTQDRITEIGLIRY-ENGVETGRWNTL---INPGINIPPFIQRLTGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + Q+ ++ +N RFD + +N F R Sbjct: 64 QDMVDHAP-TFSQVYETLLQWLDQ---AVLCAHNARFDYGFLKNEFKRIGV--------- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + LL ++ P S L + + H A D Sbjct: 111 -TFQKKLLCTVKLSRKLYPQHH----------SHSLNAIIERFRLICDQRHRAMGDTEMI 159 Query: 185 LALVWLIREK 194 A + + + Sbjct: 160 AAFIDVAMRE 169 >gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501] gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501] Length = 1453 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 65/202 (32%), Gaps = 22/202 (10%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D + +E + +P +P Sbjct: 2 YLIFDTETTGLPKRWDAPASDTDNWPRCIQIAWQLHDGEGRLVEQYDAL-VRPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ A +G+ E S T + N+ FD FYR Sbjct: 61 -DAEQIHGISTDLAREEGLPLEEVLEAFRGALSR--TQFLVGQNVGFDINVMGAEFYRVA 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + ++ +LD A + L G A Sbjct: 118 DE-------DPLEKFPVLDTCTESTAELCQLPGGRGGKFKLPTLTELHL-HLFGEPFEEA 169 Query: 175 HDAKADVYATLALVWLIREKKP 196 H+A ADV AT + ++ Sbjct: 170 HNATADVEATARCFLELLRRRQ 191 >gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 870 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 84/209 (40%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A ++++++ E ++ E F ++ ++ Sbjct: 501 KENIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 556 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + + G + + + ++ + I+G+N + + N + Sbjct: 557 GFSDEMLQKIGEDKEKVLKEFVEY--SKGSIIVGHNVQYDINILCSELERSNLGKPKFKT 614 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 615 F------YDTLDIYRRFY-------------PGNINYKLENLSNVYDTKHKPSHDAMDDI 655 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I EK + +K+ Sbjct: 656 IATGELLVRAINEKIRETSMERMALMSKH 684 >gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] Length = 929 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 28/185 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ D ET G DR QFA V +++E+ F + P +T Sbjct: 6 KRYLVVDLETTGNQANRHDRIIQFAATLV-EGSKRLETYSTF---INPEREIPPFIQQLT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P + + + I CI +N+ FD + R Y + Sbjct: 62 GIKPSDCYDAP-IFTDVAPIIQNLLED---CIFVAHNVSFDWTFLAREMQRAGYPLPKT- 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +++ R IY G S+KLQDL+ + H H A +D Sbjct: 117 -----KKLDTVELARIIY-------------PGIDSYKLQDLSDEFKLGHDRPHQADSDA 158 Query: 182 YATLA 186 T Sbjct: 159 EVTAD 163 >gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 470 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 33/203 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D Q VRV + + E + P + + Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRV-VKGRIVEGEQFDTL---VNPGIPIPPASTRVHK 333 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++ + + QF +I +N FD + R R + Sbjct: 334 VSDRMVQDAP----DIITAGRQFHHFARDAVIVAHNAPFDMAFLRRHAKRMEVEW----- 384 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKAD 180 +LD + + + L L GIE H A D Sbjct: 385 -----DHPILDTVLLSAVLF----------GASETHTLDALCDRLGIEIPETLRHTALGD 429 Query: 181 VYATLA-LVWLIREKKPKLFEYL 202 AT LV ++ + + + Sbjct: 430 AVATAEALVRMLPMLQARGMKTF 452 >gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] Length = 876 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A ++++++ E ++ E F ++ ++ Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 562 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + +F II +N+++D + RN ++ Sbjct: 563 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 619 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 620 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I EK +K+ Sbjct: 662 IATGELLVRAINEKIIPTSMERMALMSKH 690 >gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 870 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 87/209 (41%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A ++++++ E ++ E F ++ ++ Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 556 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + +F II +N+++D + RN ++ Sbjct: 557 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 614 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I EK + +K+ Sbjct: 656 IATGELLVRAINEKIKETSMERMALMSKH 684 >gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 870 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 106/300 (35%), Gaps = 30/300 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A ++++++ E ++ E F ++ ++ Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 556 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + ++ ++ I+G+N + + N + Sbjct: 557 GFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKT 614 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 615 F------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ +K + L+ I + + R L+A Sbjct: 656 IATGELLVRAINEKIRETSMERMTLMSKHLKAFTAISKKLNELFQIAE--SKRPY-ELVA 712 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 V K G + +DL L + L + + I+ L+ Sbjct: 713 CVMNGFNIKSMYAGDENKEKLNRLRDL--YALFRDLDDKSKGNRDALLDIIRITGLSNGE 770 >gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris SK11] gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactococcus lactis subsp. cremoris SK11] Length = 277 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 25/193 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V++D+ET G + Q V+ D +++ E + Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYV--STEITQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI P L +E E F ++ +N FD + Sbjct: 59 TGIKPADLLNQPTIE-EILPDFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + + +S+ L++ + + +HDA D Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155 Query: 181 VYATLALVWLIRE 193 T L +++ Sbjct: 156 CLITAKLYQYLQK 168 >gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] Length = 1442 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 26/206 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V+YD ET G + + + +++ + ++ + +TG Sbjct: 413 ETYVVYDLETMGLNSHENEIIEIGAIKL-KGTRIVDKYSQL---INPGKSIPSKIQELTG 468 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E + F + +N RFD + + Y Sbjct: 469 ITDDMVKDEPSIE----EVLPGFLEFAGDATLVAHNARFDIGFLTRDVKK-----YTNIK 519 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D S D L R + L+ + G+ N H A D Sbjct: 520 DYKPSVIDTLQWAR-------------DLLPDLRGYGLKSVTKKLGVALENHHRAVDDSQ 566 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 AT + + EK + + +K Sbjct: 567 ATAHMFAIFLEKFIEEGAVKLNELDK 592 >gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] Length = 532 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 54/192 (28%), Gaps = 29/192 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ V D ET G D DR + V V E P + Sbjct: 29 LSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIV--EWETL---LDPGMSIPPFIQRM 83 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E+ + + + + +N RFD + +N F R Sbjct: 84 TGISDDMVRGQPTFES-LAESLAERLQ---GRLFVAHNARFDYGFLKNAFRRAGV----- 134 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R D+L +R + P + L L G+ H A AD Sbjct: 135 -----TFRADVLCTVRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRALAD 179 Query: 181 VYATLALVWLIR 192 I Sbjct: 180 AELLWQFWQKIH 191 >gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1] gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum aromaticum EbN1] Length = 642 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 27/186 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G D + D Q R+ K+ E F + PE+V I G Sbjct: 451 TYTVFDTETTGLDPSKGDEIIQIGATRIVNS--KLLRQESFEQLIDPERGVSPESVKIHG 508 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP +R + F + ++ +N FD + + Sbjct: 509 ITPDMLAGQPT----IARVLPAFHAFAQDTVLIAHNAAFDMRFLQ--------------- 549 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +R + S +L+ +A + + H A D Sbjct: 550 -----LKETMTGLRFDQPVLDTLLLSAVVHPNQESHRLEAIAERLNLTIIGRHTALGDAI 604 Query: 183 ATLALV 188 T ++ Sbjct: 605 VTAEVL 610 >gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 299 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 58/205 (28%), Gaps = 29/205 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R + + + +TGI Sbjct: 21 TFVVVDLETTGGAPGARSLTEIGAVKV-RGGQVLADFSTL---VNPGVAIPAQITMLTGI 76 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 T S + F S + ++ +N RFD + R + Sbjct: 77 TNAMVAGAPG----VSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPE 132 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D L + R + + KL LA G +H A Sbjct: 133 ------PRVLDTLALARKAWT-----------RSEVPNHKLGTLAAFVGSRTRPSHRALD 175 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D AT+ ++ E L + Sbjct: 176 DARATVDVLHAALEVMAPLGVTHLE 200 >gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411] gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411] Length = 198 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 27/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G +R + A + + R E + + E +TGI+ Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHI-RNGELQDKYTTL---LNPNLSVPQEITDLTGISD 68 Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------------NTCIIGYNNIRFDDYYSRNIFYRN 113 +E + F +T + +N+ FD + ++ R Sbjct: 69 GLLADKP-TFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRT 127 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + ++ R + + + + ++L ++A + H Sbjct: 128 QLKNSAYANRPYTPRL----------VCTAEASRTLIPRESVGRYRLGNVASYLKVPHRP 177 Query: 174 AHDAKADVYATLALVWLI 191 H A +D AT ++ + Sbjct: 178 LHRAMSDALATYDVLRAL 195 >gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] Length = 821 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 86/269 (31%), Gaps = 30/269 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ V++D ET G D ++ + V++ + I+ +VF + Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKI-ENGKIIDRMDVF---VNPGVPIPFRITQL 569 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I + +E + QF I+ +N FD ++ Sbjct: 570 TSIDDSMVMDAKGIE----EVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIP---- 621 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++D + P + FKL +A IE ++ H A D Sbjct: 622 ------FSAPVIDTVALSRLLLPRLNR----------FKLDTVAKELKIELLHHHRAVDD 665 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT + E + + + ++ ++ ++ + P H+ + L Sbjct: 666 AEATARIYLKELEILEQRGVSSLEEIDSLEVDQVGKVRKL-PSYHIILLAKNDIGRINLY 724 Query: 241 APVAW-HPRYKDSVIGCNLSGDMRVFQDL 268 V+ H +Y S + + L Sbjct: 725 RLVSQSHLQYFRMKPRIPKSLLKKYREGL 753 >gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] Length = 952 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 27/192 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D+ET G + + +RV R E +++ + E +TG++ Sbjct: 4 IIVDFETTGLEPERAEILEIGALRV-RGGEIVDTFHTL---VRPERPIPDEITRLTGLSD 59 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E E R F +T + G++ F R+F + Sbjct: 60 TDVAGAP-SEREALMRFATF--AGDTPMAGHH----------WAFERSFLRDRASRYGLP 106 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + +P + S +L+ LA + +H A AD + Sbjct: 107 LQPGDGLCTLNLARILAPRLM----------SHRLEYLARRLCLRAEISHRALADAHTAH 156 Query: 186 ALVWLIREKKPK 197 L+ + K + Sbjct: 157 QLLMRLENKARR 168 >gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH187] gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] Length = 315 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A + KL+ L GI +H+A D Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPK 197 A+ + + Sbjct: 162 AAVYQKCAFIEEE 174 >gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] Length = 390 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 25/198 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V+ D ET G + R Q V + Q +++ E + A+ + Sbjct: 20 MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQ-RIVKTWESKLRLIDGEV--SAYAMQV 76 Query: 61 TGITPQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + P + + R++ + F P ++G +N+ FD + + F R+ ++ Sbjct: 77 NRLDPSDMRSEKYPHPKAVLRKLQEEFLRPG-VLLGAHNLSFDLGFLQAEFARHGLPQWQ 135 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + +D M A PD S L+ LA +E HDA A Sbjct: 136 ---------GNFVDSMALGRALLPDL-----------SASLESLARHFRVELTQHHDALA 175 Query: 180 DVYATLALVWLIREKKPK 197 D AT ++ + + + Sbjct: 176 DAVATAHVLLHLLDLAQQ 193 >gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 952 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 27/192 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G D + +RV R E +++ + E +TG++ Sbjct: 4 IIVDLETTGLDPERAEILEIGALRV-RGGEIVDTFHTL---VRPERPIPDEITRLTGLSD 59 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E E R F + ++ F+ + + R Sbjct: 60 ADVAGAP-SEREALMRFAGF---AGHTPMAGHHWVFERSFLLHRVARYGLPLQP------ 109 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + +P + S +L+ LA + +H A AD Sbjct: 110 ---GDGLCTLSLARILAPRLM----------SHRLEYLARRLRLRAEVSHRALADARTAH 156 Query: 186 ALVWLIREKKPK 197 L+ + EK + Sbjct: 157 QLLMRLEEKARR 168 >gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] Length = 828 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 72/242 (29%), Gaps = 37/242 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G + D+ Q V + + + + + ITGI Sbjct: 8 IAVVDLETTGSHLDQGDQIIQIGAVLI-EDGQVLAQHSML---LNPERNIPTHITAITGI 63 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + ++ + ++ C +N+ FD + + F D Sbjct: 64 QSDQVQDAP-TFSQVAGLWYERLKD---CFFVAHNLGFDLTFLQAKFAEQGLDFQP---- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD ++ F A F LQDL+ G+ +AHDA D Sbjct: 116 ------PALDTVQLAKIFL----------PQAPGFNLQDLSQFFGLNFQDAHDALGDARM 159 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ ++ + DY K L I P + AS + P Sbjct: 160 TAHLLDVLAHQAAD-----LDYGTK---LALQPIFKALPYQASQFLNQASSFYCQVNWPE 211 Query: 244 AW 245 Sbjct: 212 GQ 213 >gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] Length = 1442 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 53/418 (12%), Positives = 110/418 (26%), Gaps = 50/418 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D +F V++ + +++S ++F T I Sbjct: 392 TYVVFDLETTGLSAKYDYMIEFGAVKI-KNGLRLDSKQLF---IKPPISIPAFIEKKTNI 447 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +E + + ++ +N FD + R Sbjct: 448 SNEMVRNA-KSFSEVVDELLAYI---GDAVLVAHNASFDFPFLNEELRRLSRKPL----- 498 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D LD+ RAI + F L+ ++ +AH A D Sbjct: 499 -TNPVIDTLDMARAI-------------LSDRSRFALEYVSNHYKLNYSRSDAHRADYDA 544 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMFGASRSNTALI 240 + + F+ ++++ D + M V A + Sbjct: 545 NILADAFEHLLVDAKRQFQVETIRDLQDKVHTDSDFKRMFSKHAIVIAKNQAGLKVLYDL 604 Query: 241 APVA----------WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290 ++ S + Q+L G Sbjct: 605 VSISNTETLAVKTKNEGSNAIGEPRIKRSTLQKYRQNLLVGSACLNGEVFEMACNGDDDR 664 Query: 291 PIKEVHLNKCPILMP-------IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343 K + L P ++ + R +R + L Sbjct: 665 LKKTMAFYDYIELQPLGNYSTSLELGSLPNLARLKEVQQRMIAMAHELELPILATSDCHY 724 Query: 344 IYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401 + + ++ G A ++I R+ P +L +D + E + Sbjct: 725 CKQEEKIFRDIYITAK-GVGGIAHPLYIRNEQIRRSHPN--PDQHLRLTDEMIKEFSW 779 >gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] Length = 861 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 25/190 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D DR Q A +R+D+ +IE E F + + G T Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERF---INPGKSVG-TSQLVHGFTD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G +F N II +N+ +D + R+ ++ Sbjct: 551 AYLAEHGESPKVVLEAFKEF---SNNRIIVGHNVNYDISILSHELARHNLGEPQFK---- 603 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL L+ I H H+A D+ AT Sbjct: 604 -AVYDTLDIFRRFYPTLEN-------------HKLGFLSKYFPINHTPTHNAMDDIIATG 649 Query: 186 ALVWLIREKK 195 L+ + Sbjct: 650 QLLIYAVREN 659 >gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 328 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 30/219 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + + D+ET G + A DR + V V + E + D A +I Sbjct: 14 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLI-RVHRDI----GAQWI 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ + + E +R + + + +N+ FD + + + R D Sbjct: 69 HHISAVELIHAPEFEG-IARELRDLLA---GRVFVAHNVAFDSKFLLSEYRRLGADIPVN 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S +L M+ + G L D GI++ +AH A +D Sbjct: 125 SHT-------MLCTMKLSRSLIGVG-------------SLADCCREFGIDNEDAHSALSD 164 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 +AT L+ + + PK + + + Sbjct: 165 AHATALLLGRLMDADPKWSGWRRRLDAAEEAGEHWPELK 203 >gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] Length = 318 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ ++ +P + GI Sbjct: 32 NYTMLDIETTGLYPYRDRIIELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ +++G+ + R +F + IIGYN NF + Sbjct: 90 TEEQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + +L D GI V AH D Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + + + KN Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213 >gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217] gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217] Length = 688 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 52/188 (27%), Gaps = 29/188 (15%) Query: 4 HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D Q AG+R+ + E F P + + Sbjct: 493 SFVVFDTETTGLSPRGGDEIVQIAGLRI-VNGRIL-RGECFDMLVNPGRAIPPASTRVHH 550 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + E RR H F ++ +N FD + R Sbjct: 551 ISDEMVQGAPGI-VEAGRRFHDF---CQGAVLVAHNAPFDLAFLRLKEKVIGR------- 599 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180 R + D + L L G I H A D Sbjct: 600 -------------RFDNPVLCTVLMSAGLFDHSGQHTLDALCDRFGITIPPEARHTAMGD 646 Query: 181 VYATLALV 188 AT + Sbjct: 647 TVATAEVF 654 >gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] Length = 315 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] Length = 1477 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 69/387 (17%), Positives = 123/387 (31%), Gaps = 47/387 (12%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + + + + KP +P Sbjct: 2 YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDEFGKLV-EHQDYLVKPEGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A G+ AE + ++ S + NI FD F+R Sbjct: 61 -DAERIHGISTELAEEQGISLAEVVEKFNEALSK--ARFVVGQNIGFDVNIMGCEFHRLG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 D S + V+ + + ++ P G FKL +L G+ Sbjct: 118 VD----------SPMSSMPVLDTCTEVTAELLKLPGGRGGK--FKLPNLTELHQYLFGVP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ--NMTPLVHVSG 228 AH+A ADV AT + + + E L N ++ + + + L HV+ Sbjct: 166 FAEAHNATADVEATTRCFLQLIKMEVFSVEQLQCDTNYFRVFREHNPEVIERIGLSHVNL 225 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 + L A P+ L+ + + + L S + + Sbjct: 226 KSASDEIRKRLQK--AEGPKISKQ----TLAENKQELERAVFAHLHNHTQFSVLQSTINI 279 Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348 P IK K P + D + ++ + R +A K Sbjct: 280 PALIKATAAAKMPAVAMTDRANMMGAFHFV---------AQVINHNKGVDARNQAAIEKG 330 Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDR 375 + + FF + + R Sbjct: 331 EVPEEVPIKPIVGCEFFVCENHEDKKR 357 >gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 1446 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/401 (11%), Positives = 115/401 (28%), Gaps = 46/401 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G ++ + +++ + + I+ F V +T IT Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKI-KDGKVIDKFSTF---VNPQKSIPMRVVEVTKIT 478 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + ++ +N FD + ++ Y+ Sbjct: 479 DDMVKNAETID----KVFPKLLEFIEGSVLVAHNADFDIGFLKHNAKVLGYEF------- 527 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + + ++ S+KL +A GI+ AH A DV T Sbjct: 528 DFTYIDTLGLAQDVF-------------PDYKSYKLGRIAKNLGIKVEVAHRALDDVDTT 574 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTAL 239 + + +I EK + + + + + A ++ L Sbjct: 575 VKVFNIIIEKLKERGAQTLSDIDLYAADEEAKKVAYKKVKTHHAIILAKNYVGLKNLYKL 634 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ YK I ++ + S L+ + L + + Sbjct: 635 VSYSHLDYFYKKPRILKSMFKKYSEGLIIGSACSEGELYQA-ILLGKPEEQIEEIANFYD 693 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 + P+ + + E N ++ L A + + ++ Sbjct: 694 YLEIQPLGNNDYLVRQEQVPSKEYLKEINKKIVELAERLGKPVVATGDVHFLDPEDEIYR 753 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399 ++ + + + L L ++ L E Sbjct: 754 RILEAGQGFK-----------DADNQAPLYLRTTEEMLDEF 783 >gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 406 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 62/202 (30%), Gaps = 27/202 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F + D ET G R A+ A V VD E P D P I Sbjct: 1 MNAGFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETL-VNPQRDLGPQ----HI 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI L V + + + + + ++ +N+ FD + + R + Sbjct: 56 HGIRAADILHAPV-FGDIAHDVMELLA---GRVLVAHNVHFDYRFVSHELGRAGLE---- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L M+ + P + L+D + G+ NAH A D Sbjct: 108 ---LPFEVHDCLCTMKLARRYLPGAGR-----------SLKDCCDSFGLNLANAHSAGDD 153 Query: 181 VYATLALVWLIREKKPKLFEYL 202 A ++ E+ Sbjct: 154 AEAAAHVLSNYLRMDSGNPEWF 175 >gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] Length = 525 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 27/211 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V +D ET G D DR + + +E+ + EA I Sbjct: 49 MKRYVAFDVETTGLDSKKDRIIEVGAILF-ENGHTVETYSSL---VNPEVKISKEATTIN 104 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 IT + E + + +F I +N FD + R YD+ Sbjct: 105 HITNGMVKKAP-TEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQI 163 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D L + R G +++K +A I++ H A + Sbjct: 164 L-------CLDTLSLSR-------------KIIPGLSNYKQTTVAKHFNIKNKQEHRAIS 203 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D ++W + K + K++ Sbjct: 204 DAEVCGEILWKLLSIKKDEEVKKLEILVKSK 234 >gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16] gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16] Length = 528 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 51/194 (26%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D DR + V V + P +TGIT Sbjct: 30 IVFVDLETTGADAQRDRITEIGVVEVGPDGII--EWDTL---LDPGMSIPPFIQRMTGIT 84 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + +N RFD + +N F R Sbjct: 85 EEMVRGQP-SFESLAESLAERLQ---GRLFVAHNARFDYGFLKNAFRRAGV--------- 131 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R D+L +R + P + L L G+ H A AD Sbjct: 132 -TFRADVLCTVRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRALADAELL 180 Query: 185 LALVWLIREKKPKL 198 I Sbjct: 181 WQFWQKIHATYSVD 194 >gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] Length = 244 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 29/209 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G D F V V + ++I F+ +TGI Sbjct: 60 IIVFDLETTGFYPYNGDEIISFGAVLV--KGDEIFEDVSFYSLVNPKRRIPMHITQLTGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +H F I+ + D + +R + Sbjct: 118 TNEMVEGAP----DLMQVLHDFMEFVGRRILLAHGSGHDKQFLNAALWR------TSKVN 167 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D + V + + PDG + L +L + I + H A D Sbjct: 168 LTHRLLDTMMVAKWLEPKRPDG------------YGLDELLESANIPIADRHHALKDSIM 215 Query: 184 TLALV----WLIREKKPKLFEYLYDYRNK 208 T L I+E+ + LY Y +K Sbjct: 216 TAKLWMAYLKKIQERNIVTLDDLYAYLSK 244 >gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 637 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 31/184 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D ET G D D V + + + EVF + + G+T Sbjct: 453 YTAFDLETTGLDPEKDAIIALGAVHIL--GKTVLRHEVFEALVNPGRPIPKASTEVHGLT 510 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T ++ +N + R D Sbjct: 511 WEMLKEKPKLE-EVLPGFRLFLE--DTVLLAHNGA-----FDMAFLRRVGIDQP------ 556 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L+D + Y PD +L+ LA G+ + H A D T Sbjct: 557 -----PLVDTLLLSYLLFPDLQ----------DHRLETLAERFGVPVIGRHTALGDALMT 601 Query: 185 LALV 188 + Sbjct: 602 AEVF 605 >gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] Length = 923 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 77/259 (29%), Gaps = 31/259 (11%) Query: 1 MTN--HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + I D ET G A DR Q A V + +IE T F Sbjct: 1 MMESQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW--EIERTYTKF--INPGKAIPTFI 56 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T IT + + I++ + C+ +N FD + + F R Sbjct: 57 QDLTHITNEDVKDA-FPFEAHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP- 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + D +++ + + FKL DLA IE NAH A Sbjct: 112 -----KWQGKKMDTVELAKI-------------LFPMSLGFKLGDLAADLNIELANAHRA 153 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSN 236 D AT L ++ L + + +K R K Q + + R N Sbjct: 154 DDDARATAELFKHCWKELLSLPQLTLEQMHKRSFRLKSNISQLFFEALQIKRQHTTGREN 213 Query: 237 TALIAPVAWHPRYKDSVIG 255 A Sbjct: 214 VHYYRNFAIGNGRNKHEHV 232 >gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681] gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681] Length = 245 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 36/214 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G D F +RV + E F+ + +TGIT Sbjct: 61 VVFDLETTGFSAQHGDEILSFGAIRVVGDM--VMEKEQFYTLVNPRTVIPEHITELTGIT 118 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +H F S ++ + D + ++ Sbjct: 119 REMTDQAPP----LMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWK------TSKVQL 168 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + + + + + L +L I H A D T Sbjct: 169 THRVLDTMMLAKWLEPQQHQT------------YSLDELLAYQSIPIEGRHHALEDAKMT 216 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 L + K + L D+ Sbjct: 217 AKL-----------WVAYVQEMLKRNVTNLADVY 239 >gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes] gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes] gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii] gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes] gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes] gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii] gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii] gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes] gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes] gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes] gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes] gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 76/252 (30%), Gaps = 27/252 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ + +F I+ +N FD + + + + N+ Sbjct: 57 KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KAENAV 106 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L++ R +Y + +L L I H A D AT L Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 W + + ++ + + + + + + P A + Sbjct: 154 WKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213 Query: 249 YKDSVIGCNLSG 260 Y V S Sbjct: 214 YFYRVPRIPRSQ 225 >gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 244 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61 V +D ET G + + + A +RV++ +S +VF P + +P + V +T Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ +G+ EAE + R + S ++ +N +FD ++ + R+ Sbjct: 74 GITDEQLENEGITEAEAAARFTELIS-GGRVLLVAHNAQFDLLFTAEMLRRHGNGGP--E 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L V + A+ L + N+H A DV Sbjct: 131 ALKAADYLDSLTVYKDRRAYPHKLAN-------------AILTYKLEGKVQNSHRAIDDV 177 Query: 182 YATLALVWLIR--EKKPKLFEYLYDYRNKNQL 211 A + + + ++ Y K + Sbjct: 178 AALFEVCKAMDAERSDLLNYVNVFGYNPKYGV 209 >gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] Length = 315 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 28/198 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A + KL+ L GI +H+A D Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLIREKKPKLFEYL 202 A+ + + Sbjct: 162 AAVYQKCASIEEETNRKS 179 >gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 228 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 61/231 (26%), Gaps = 30/231 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + YD ET G + DR + A + + V + + EA I Sbjct: 1 MTALIFYDTETTGTQIDKDRIIEIAAY-----NNVTKQSFVTYV--NPEIPIPEEASKIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E ++ F ++ +NN FD R+ + Sbjct: 54 GITTSTVSSAPK-FPEAYKQFCDFCGN-EAILVAHNNDSFDFPLLEKECRRHSLEPL--- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D ++ + PD LQ L G AH A DV Sbjct: 109 ------SLRTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152 Query: 182 YATLALVWLIREKKPKLFEYLYD--YRNKNQLRKLIDIQNMTPLVHVSGMF 230 + + ++ + PL V + Sbjct: 153 ITLYNVFSALIGDLSAEQVLALMEESQHPKAFKMPFGKYRGKPLTEVPASY 203 >gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] Length = 525 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 51/188 (27%), Gaps = 25/188 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G A + VRV E P +TGITP Sbjct: 11 VVVDLETTGLG-ARAEITEIGAVRVRE-GRLCEEFSSL---VRPVGPIPPAITALTGITP 65 Query: 66 QKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A R + F + ++ +N FD + R R Sbjct: 66 AMVRGAD-PIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSLPWPR---- 120 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R + KL +A G V H A D A Sbjct: 121 --VRVVDTLALAR-----------LALPRPIVRNHKLATVASYFGTATVPGHRALGDARA 167 Query: 184 TLALVWLI 191 T ++ Sbjct: 168 TAEVLLGF 175 >gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes] gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes] gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes] gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes] gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes] gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 75/252 (29%), Gaps = 27/252 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ + +F I+ +N FD + + + + N+ Sbjct: 57 KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KAENAV 106 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L++ R +Y + +L L I H A D AT L Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 W + + ++ + + + + + P A + Sbjct: 154 WKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213 Query: 249 YKDSVIGCNLSG 260 Y V S Sbjct: 214 YFYRVPRIPRSQ 225 >gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] Length = 948 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 88/282 (31%), Gaps = 40/282 (14%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G V DR Q V V + I E +TGI Sbjct: 7 YAVVDIETTGTSVTDGDRIIQIGCVFVQHN-QVINHFET---DVNPLKEIPAAISRLTGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + + + ++ + + +N+ FD + R Y + Sbjct: 63 TNKRVRHAPL-FDDVAGTLYSLLTN---TVFVAHNVNFDLPFINAELERVGYPALP---- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + ATSF+L+DL+ IEH N H A +D A Sbjct: 115 -----IAAVDTVSLSQILL----------PTATSFRLRDLSRLFNIEHDNPHSADSDASA 159 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L + + L ++ID+Q PL + A + N + Sbjct: 160 TAELFIFLFRRLRALPMVTLQ--------RMIDLQADLPLQTTTLFRVAQQLNEQSPRKL 211 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK 285 P Y G L + +K T + K Sbjct: 212 ---PDYLYIKNGLALR-QPAPLPATTLAEPSKYPKTKKQKQK 249 >gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] Length = 1445 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 68/228 (29%), Gaps = 27/228 (11%) Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + P Q A D+ I F KP +P Sbjct: 2 YLIFDTETTGLPKTWNAPITNTENWPRCVQIAWQLHDKMGNII-EHNDFLIKPDGYNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A G+ AE ++ S T I N+ FD FYR Sbjct: 61 -DAERIHGISTELAEEQGISLAEGLLLFNEVLSK--TTFIVGQNLNFDLNIMGCEFYRLG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + + +LD A + G +A Sbjct: 118 VE-------DKMTPLPILDTCTEKTALMCQIPGGRGGKFKLPTLTELH-QHLFGAGFGDA 169 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 H+A ADV AT + + K + P Sbjct: 170 HNATADVEATTRCFLELIRI-----REFTKEQLKEDVAYFKKYSEANP 212 >gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] Length = 244 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 21/191 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61 V +D ET G + + + A +RV++ +S +VF P + +P + V +T Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ +G+ EAE + R + ++ +N +FD ++ + R+ Sbjct: 74 GITDEQLENEGITEAEAAARFTELIG-GGRVLLVAHNAQFDLLFTAEMLRRHGNGGP--E 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L V + A+ L + N+H A DV Sbjct: 131 ALKAADYLDSLTVYKDRRAYPHKLAN-------------AILTYKLEDKVQNSHRAIDDV 177 Query: 182 YATLALVWLIR 192 A + + Sbjct: 178 AALFEVCKAMD 188 >gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588] gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM 2588] Length = 456 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 86/331 (25%), Gaps = 37/331 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + + A D ++ E +TGIT Sbjct: 2 YAIVDIETTGGHASANGITEIAIYIYD-GRNIVQQYETL---INPGVPIPRYIQSLTGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + I I +N+ FD + + + Y Sbjct: 58 DEMVANAPA-FDEVAGDIFALLHDK---IFVAHNVNFDYSFIQYHLAQAGY--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R L +R G S+ L +L + I H A D AT Sbjct: 105 -QLRTKKLCTVRLGRKI----------IPGLPSYSLGNLCKSLEISVTQRHRAAGDAAAT 153 Query: 185 LALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L L+ ++ K + +K Q + + + V Sbjct: 154 VKLFGLLLQQDTGKAIAHALSTHSKEQFLPPNLPPEQVTALPGTPGVYYFHDQKGKVVYV 213 Query: 244 AW--------HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 + + + G +R + L E + + Sbjct: 214 GKAKNIRKRVNSHFTGNSAGRKRQEFLRNIYSISHEVTGTELMAHILESVEIKRLWPVYN 273 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLE 326 + K YC ++ + ++ + Sbjct: 274 YSQKYIEFKYGFYCFEDQEGYLRLVIEKRRK 304 >gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] Length = 934 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDENLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179 >gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] Length = 233 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 61/188 (32%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G + LDR + G+ ++ + T + P +D P+A+ + GIT Sbjct: 4 IIFDTETTGLESKLDRVIEIGGIELNNHF-PTGRTLHIYINP-EDRKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AE I +FF +N FD + F R Sbjct: 62 DFLKDKPK-FAEVVDEIREFFE---GARWVAHNATFDMGFINAEFARLGIAPVSSE---- 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 114 -LVTDTLSLARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 184 TLALVWLI 191 + + Sbjct: 159 LAEVYIEM 166 >gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 249 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 26/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D E G DV DR + A VR + + E+ + I+ Sbjct: 9 FTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVI----SSIEFLINPERVVSAESQRVHHIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I FF + I +++ FD R ++ + Sbjct: 65 NAMLRDQPKI-AEVFPQIKAFFKEGD--YIVGHSVGFDLQVLSQEMERIG-----ETFLS 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + + + + L+ LA+ + + H A DV Sbjct: 117 KYTIIDTLRLAK--------------EYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEIN 162 Query: 185 LALVWLI 191 + + + Sbjct: 163 INIFKHL 169 >gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] Length = 315 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A ++KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNYKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus weihenstephanensis KBAB4] Length = 934 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + + + I + +N+ FD + + Y Sbjct: 57 ELTGIDENLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D +++ + A S+KL+DLA + +EH H A Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L + KL Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179 >gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183] Length = 249 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 26/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D E G DV DR + A VR + + E+ + I+ Sbjct: 9 FTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVI----SSIEFLINPERVVSAESQRVHHIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I FF + I +++ FD R ++ + Sbjct: 65 NAMLRDQPKI-AEVFPQIKAFFKEGD--YIVGHSVGFDLQVLAQEMERIG-----ETFLS 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + + + + L+ LA+ + + H A DV Sbjct: 117 KYTIIDTLRLAK--------------EYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEIN 162 Query: 185 LALVWLI 191 + + + Sbjct: 163 INIFKHL 169 >gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 315 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ + Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A + KL+ L GI +H+A D Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG] Length = 933 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 28/194 (14%) Query: 4 HFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G DR QF V R + I + D +TG Sbjct: 6 TFAVVDLETTGTSVKDGDRMIQFGCALV-RHGKII---QTISQMINPDRSVPQTIQRLTG 61 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+P++ + E + +HQ + + +N+ FD + F R + Sbjct: 62 ISPERLVAAPY-FDEVAPALHQVLTK---TVFVAHNVNFDYPFLNAEFERIGLPKLQ--- 114 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D + P+ +SF+L DL I+H N H A +D Sbjct: 115 ------LEAIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQADSDAT 158 Query: 183 ATLALVWLIREKKP 196 +T L+ ++ + Sbjct: 159 STAKLLLQLKARFQ 172 >gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99] gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99] Length = 500 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 27/208 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D+ET G DR + V + + + + D A GI Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTL---INPHR--DVGATERHGIR 152 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L EA I + + +N+ FD + R Sbjct: 153 ARDVLGAPAFEA----IIPRLLRDLRGRVFVAHNVNFDQRFLLAELRRAGVP-------- 200 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + ++W R A S KL D A G+ +AH A AD AT Sbjct: 201 ----------LDNPWLTGLCTMRWAGRLLPAASRKLPDCCDAAGVFLTDAHRALADARAT 250 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR 212 +L+ + + + + Sbjct: 251 ASLLKYLIDHCGSPPPWAKEIDGAEDFE 278 >gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 453 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 52/194 (26%), Gaps = 34/194 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 D ET G DR + V VD E + P +T Sbjct: 1 MRPLAFVDLETTGATATHDRITEIGIVEVDADGSVRE----WQQLVNPGMRIPPFIEQLT 56 Query: 62 GITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GI+ + EA E +R+ + +N RFD + +N F R Sbjct: 57 GISDEMVADAPPFEAIAGEVMKRLE-------GRLFIAHNARFDYGFLKNEFKRLGV--- 106 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R +L ++ P+ L L + + H A Sbjct: 107 -------TFRAAVLCTVKLSRTLFPEH----------KRHNLDSLIERHELRAEARHRAL 149 Query: 179 ADVYATLALVWLIR 192 AD I Sbjct: 150 ADAQLIHQFWQKIH 163 >gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 239 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 16/201 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D E G D D VR+ + +P A I IT Sbjct: 41 FAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARP--ATLIHRIT 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + + + F +I +++ D + R+ Sbjct: 99 PAQLQHSPA----LAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHL---------G 145 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD-DGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G +D MR A+ + + S+ L DL+ G+ AHDA D Sbjct: 146 GAPATPCVDTMRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQ 205 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L + K Sbjct: 206 TAYLFLYLVRKLKGGGITTLR 226 >gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC 15444] gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC 15444] Length = 232 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 55/199 (27%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D ET G + DR + V I + + F + ITGIT Sbjct: 8 IAFDTETTGLNPNEGDRIIEIGAV---EMINHIPTGKTFRRLINPGMAVSEATIRITGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E I F II +N FD + R D Sbjct: 65 DDHLRDKPPFEHP--DIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIP----- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D + + R Y +P L L I + H A D Sbjct: 118 EDRWVDTVQMARKRYPGAPA--------------SLDALCKRFDISLESRTFHGALLDSQ 163 Query: 183 ATLALVWLIREKKPKLFEY 201 ++ + + + F + Sbjct: 164 LLASVYLELLGGRARAFSF 182 >gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 315 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 258 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D ET G D+ DR + + ++V K E A + Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPAMASAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + E +++IH + + GYN+ RFD R D Sbjct: 61 HGITDEKVANEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAGVDFDL- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + G + + AH A AD Sbjct: 117 ---GNRVTVDIQTIFHKMEQRTLS----------------AAYKFYCGKDLLEAHTAAAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239 AT ++ +K L + +++ D +F + + Sbjct: 158 TNATYEILKAQLDKYDNLENNIKKLSEFTYRKQIADFAGFIGYNSEGEEIFTFGKHKGSK 217 Query: 240 IAPVAWH-PRYKDSVI 254 + + + P Y ++ Sbjct: 218 VEDIFVNEPGYFGWLL 233 >gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 729 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 27/213 (12%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + + D Q +R+ + E PE++ I G Sbjct: 538 SYTVFDTETTGLEPSAGDEIIQIGAIRI-VNGRLL-RNETIDQLIDPRRRLKPESIAIHG 595 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +E + H+F ++ +N FD + + Sbjct: 596 ITEDMVKGQPTIE-QALPAFHEFCED---TVLVAHNAAFDMRFLQLKEASTG-------- 643 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + S +L+ +A GI + H A D Sbjct: 644 ------------IVFRQPVLDTLLLSALLHPNQESHRLEAIAGRLGINVIGRHTALGDAI 691 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215 T + + + + + R Sbjct: 692 VTGEIFLKMIPLLAQQNIHTLRQAREAAARTYY 724 >gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 194 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 27/210 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D ET G DV VRV E+ + +TGI Sbjct: 9 TFVAIDVETTGFDVNHAEIIDIGAVRV-EGGIITETFSSL---VDPGFFIPDRIKELTGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E R F ++ I+G++ + F D Y + Sbjct: 65 TNAMLVGSPKMI-EVLPRFMDFI--GDSIIVGHHISQDIK----------FIDKYTRLYG 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G R + + P L+++A +++ H A D Sbjct: 112 EGKFRRPYICTLELSRKLLPSL----------PRHSLKEMADYFSVDYSRLHRALDDALI 161 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 T + + + + K + Sbjct: 162 TAQVFLELLNLLWSNYGIGDYFSIKRLAKT 191 >gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20] Length = 204 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 56/203 (27%), Gaps = 25/203 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V R + + + +TGI Sbjct: 21 TFVVVDLETTGGAPGARSLTEIGAVKV-RGGQVLAEFSTL---VNPGVAIPAQITLLTGI 76 Query: 64 TPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 T E + + ++ +N RFD + R + Sbjct: 77 TNAMVAGAPGVRTCVEAFLDWADLLA--DDVVLVAHNARFDVGHLRGAAAALDLEWPE-- 132 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + KL LA G + H A D Sbjct: 133 ----PRVLDTLALARKAWT-----------RSEVPNHKLGTLAAFVGSQIRPTHRALDDA 177 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 AT+ ++ E L + Sbjct: 178 RATVDVLHAALEVMAPLGVTHLE 200 >gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] Length = 1498 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 58/206 (28%), Gaps = 29/206 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T+ + +D ET G + D+ + V++ R E ++ ++ + Sbjct: 443 LTDEIICFDLETTGTNPRDDKIIEIGAVKL-RGLEIVDKFDML---VDPGCPLTEFISNL 498 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 T IT ++ + F + +N FD + ++ R Sbjct: 499 TNITDDMLKGQ----SDIKTALEAFVEFCGEKPCLVAHNAPFDTGFIKHACEREGI---- 550 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S D + + + + KL +A G H Sbjct: 551 ---KFEFSSIDTVPMSQLM-------------LPQLEKHKLNYVAEHFGYGDFQHHRGCD 594 Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205 D + + + + F + Sbjct: 595 DAEVLGKIFIELAKMLMEQFPLVLIT 620 >gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 203 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 32/220 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + ++D ET G D D+ + A +R D + ++ K PE V + Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGRLDIRITK-NSGTKLTPEIVNL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ GV E + F S T ++ ++ + +R Sbjct: 59 TGISESMMRG-GVPEPVAIMLLSCFMS--GTIVVAHHAPFDLAFLARY------------ 103 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + S L +A GIE H A D Sbjct: 104 ---------------QFEPDSFVCTRALSKLVESDESASLASVAERRGIELTGHHRAMND 148 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 V AT+ + ++ + L Y+ ++ R L I + Sbjct: 149 VEATVKVFQQMKAEADALGIKYYNVLINDEERPLTYIPKL 188 >gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 208 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 59/230 (25%), Gaps = 39/230 (16%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G DR + V + + + T Sbjct: 7 NTLVVLDFETTGLSPNQGDRAIEIGAVLI-ENGVITQRFSELM---NPGFRISRFIEDYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q E R F + N + +N FD + F + + Sbjct: 63 GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 R + F + A + +L L + H A AD Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221 T L + + F + K + K + + Sbjct: 159 AEMTGHLWLAMLADLQQEFGLCSPTFELLQKLAKKTKADVPKFLRQYAVK 208 >gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] Length = 933 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 28/194 (14%) Query: 4 HFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G DR QF V R + I + D +TG Sbjct: 6 TFAVVDLETTGTSVKDGDRMIQFGCALV-RHGKII---QTISQMINPDRSVPQTIQRLTG 61 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+P++ + E + +HQ + + +N+ FD + F R + Sbjct: 62 ISPERLVAAPY-FDEVAPALHQVLTK---TVFVAHNVNFDYPFLNAEFERIGLPKLQ--- 114 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D + P+ +SF+L DL I+H N H A +D Sbjct: 115 ------LEAIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQADSDAT 158 Query: 183 ATLALVWLIREKKP 196 +T L+ ++ + Sbjct: 159 STAKLLLQLKARFQ 172 >gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 205 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 59/195 (30%), Gaps = 26/195 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + A ++V E KP+ ++P+ +TGI Sbjct: 10 TFTVVDLETTGLNPKTSEIIEIAAIKV-EGSVITEKFHTL-VKPSIGFIPE-HITKLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + F II +N +FD + + Sbjct: 67 TNPLVIDKPKIE----QVFPHFLEFTKNSIIIAHNAKFDISFLNEASLQL---------T 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++ + PD S L +LA I + H A AD Sbjct: 114 GKLIQNPVICTLVLANRLFPDL----------KSKSLTNLAYHFNIPYHRKHRALADAEV 163 Query: 184 TLALVWLIREKKPKL 198 T L + Sbjct: 164 TYELFKKFVDYLQNY 178 >gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] Length = 222 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D+ET G DR + VR+ + + + TGI+ Sbjct: 20 VVLDFETSGMSPVQGDRAIEIGAVRI-VGGQIADRFQSLM---NPGCRISSFIESFTGIS 75 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + H F + +N FD + R + Sbjct: 76 NAMVQAAP-PATQVMAAFHDFI---GDAPLVAHNASFDRRFLDAELQRI----------D 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 R + + PD + + KL L G+ H A AD Sbjct: 122 RCRRQEFACSLLVARRVYPD----------SPNHKLATLVSYKGLPTDGCFHRALADAEM 171 Query: 184 TLALVWLIREKKPKLFEYL 202 T L + + + Sbjct: 172 TAHLWLRMAADLQDAYGFS 190 >gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237] gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237] Length = 1479 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 71/206 (34%), Gaps = 30/206 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + + +P +P Sbjct: 2 YLIFDTETTGLPKRWDVPFTDTDNWPRCIQIAWQLHDDMGNLI-EHQDYLVQPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ A + GV A + ++ + T + N+ FD F+R Sbjct: 61 -DAEQIHGISTALAEQKGVPLAVVLEKFNEAMAK--TKFVVGQNVGFDLNIMGAEFHRMG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 ++ L V+ + Q P G FKL L G+ Sbjct: 118 VENPLQE----------LPVLDTCTEHTATLCQIPGGRGGK--FKLPTLTELHHYLFGVG 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196 AH+A ADV AT + K+ Sbjct: 166 FGEAHNATADVEATTRCFLELVRKQQ 191 >gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] Length = 949 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 28/185 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G V DR Q V V + + I E K V +TGI Sbjct: 19 YSVVDLETTGTSVNHGDRIIQIGCVLV-QDGQVINHFET---KVNPREKIPRAVVQLTGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E + + I+ + +N+ FD + R Y Sbjct: 75 QDRDVRKAPLFE-DVAGTIYSLLT---GTTFVAHNVNFDFPFLNAELERAGYPPL----- 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + + A SF+L+DL + IEH + H A +D A Sbjct: 126 -PIKAIDTVTLSQI-------------LLPTAKSFRLRDLTSSLQIEHDHPHSAVSDAEA 171 Query: 184 TLALV 188 T +L+ Sbjct: 172 TASLL 176 >gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] Length = 207 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 34/206 (16%) Query: 1 MT----NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 M V+ D+ET G DR + V++ ++ + + Sbjct: 1 MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGTVVDRFQSLM---NPGFRVSG 56 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 TGI+ + F N + +N FD + Sbjct: 57 FIENYTGISNAMLANAP-SCKDVMGEFSTFIKNSN---LVAHNASFDKRFLDAE-----L 107 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNA 174 + S+ F+ + + A S KL DL A N Sbjct: 108 ELINESYTGE---------------FACSLLVSRRLNQEAHSHKLGDLVAYHNIANDGVF 152 Query: 175 HDAKADVYATLALVWLIREKKPKLFE 200 H A AD T +L L+ + + F+ Sbjct: 153 HRALADAEVTASLWLLLVDSLTERFK 178 >gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] Length = 235 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 66/220 (30%), Gaps = 39/220 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G D DR + V E I+ F + EAV I Sbjct: 4 IIFDTETTGLDKEKDRIIEIGCV------EMIDRYLTGKRFHVYLNPQGVVISDEAVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + ++ + + +F S + +N FD + R Sbjct: 58 GLTNERLKNE-KSFSDIADELLEFIS---GATMVAHNASFDIGFLNAELGRVNKPLISVD 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + P+ L L GI++ + H A Sbjct: 114 N-----ILDTLAMARRKFPMGPN--------------SLDVLCKRFGIDNSHRVFHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 D + + K + + N + + Sbjct: 155 DAEILADVYIELIGGKQG----VLGFENSKSVEQDSQNDK 190 >gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis CV56] Length = 277 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 25/193 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V++D+ET G + Q V+ D ++ E + Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYV--STEITQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI P L +E E F ++ +N FD + Sbjct: 59 TGIKPADLLNQPTIE-EILPEFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + + +S+ L++ + + +HDA D Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155 Query: 181 VYATLALVWLIRE 193 T L +++ Sbjct: 156 CLITAKLYQYLQK 168 >gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 315 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I] gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I] gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS] Length = 224 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 56/180 (31%), Gaps = 27/180 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G VA +FA VRV + D P +TGIT Sbjct: 57 FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQV---VRTDGRVLPFISRLTGIT 113 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + RDGV + F + ++N FD + + R + Sbjct: 114 QAEVERDGVPVRQAFGDFLDFIE---GGPLFFHNASFDRRFLQAAADRTGLPFEAQT--- 167 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R + S KL LA G H A ADV T Sbjct: 168 ----HCTLMLARQAW-------------PELPSHKLNVLARHLGAS-EPTHRALADVRTT 209 >gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] Length = 1457 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 136/476 (28%), Gaps = 44/476 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + +F V V + + +E E +TGIT Sbjct: 404 YVVFDLETTGLSPKFNELIEFGAV-VWQNGQILEKHEFL---IKPKEKIPSYISDLTGIT 459 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + + E + +I Q F I+ +N RFD F Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNS---ILVAHNARFDYGCLVEFFKELELYELE----- 511 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R + + K + + +H D Sbjct: 512 -QPVIDTLEVSRFLAP-----------TQKRHNLKELAKNASIHYDETESHRGGYDAEVL 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + K + + N+ + + + + V + Sbjct: 560 AKVWDQFLIKLIEKNIKDLNSLNQVGSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVS 619 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL-----FTSHDELKGLVPVPIKEVHL 297 ++ + + + L +L + H++L+ L+ Sbjct: 620 LSNTDNFLSKPLLFYDKILPSNNLLWGTSGLDSQLMEILFYNHHNDLETLIKKFDFIEIP 679 Query: 298 NKCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT----NLRDRFKAIYNKPYT 350 + K++ + + + ++ L+ + ++ Y Sbjct: 680 TPSSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIVASSEPRYINKEDKIFHLVYIYA 739 Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410 L+ G + I ++L D+ L + RN P+ Sbjct: 740 KGVGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEFAFLEDQDLID---EIVVRN-PN 795 Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + + + ++ K L + ++ +K++ L + ++ E L + + ++ Sbjct: 796 KI--ADLVEQVQVIKDKLYPPKFDDSASKIKHLVYQKAHEKYGENLPDQIALRIEK 849 >gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 208 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 53/202 (26%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G DR + V + + + T Sbjct: 7 NTLVVLDFETTGLSPNQGDRAIEIGAVLI-EDGVITQRFSELM---NPGFRISRFIEDYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q E R F + N + +N FD + F + + Sbjct: 63 GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 R + F + A + +L L + H A AD Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L + + F Sbjct: 159 AEMTGHLWLAMLADLQQEFGLC 180 >gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] Length = 1436 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 55/474 (11%), Positives = 123/474 (25%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++ F + +N++FD + R Sbjct: 475 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P Sbjct: 572 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ + L + ++ ++ + Sbjct: 632 ASTKNFYRIPRTPKSDLARLHEGLFYGSGCWQGDVFIAMIQKGYDEAREKAKFYDFLEVQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + + + + + ++ + D + + Sbjct: 692 PPANYSQLIEDGLIKDEAQLEDIIRNIYKLGKELNKPVVATGDAHYVEPHDAIYRTILIS 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 752 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIDNTNKI--ADEISE 803 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L I +++ L + E G + + + + L +I Sbjct: 804 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856 >gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14] gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14] Length = 207 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 57/227 (25%), Gaps = 30/227 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G DR + V++ E ++ + + T Sbjct: 8 DSVVVLDFETTGLSPNQGDRAIEIGAVKL-VNGEVVDQFQQLM---NPGFRVSSFIEGYT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ E F N + +N FD + Sbjct: 64 GISNNMLRTAP-PCNEVMDAFADFIGDAN---LVAHNASFDQRFLDAELADIGRY----- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180 F+ + A + KL L IEH H A AD Sbjct: 115 ---------------YTGTFTCSMLIARRLYQHAPNHKLGTLVDFKHIEHNGVFHRALAD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 T L ++ E + + + L H Sbjct: 160 SEMTARLWLVMIEDIKRQYNLHTVSFELMMKLAKTPKAKIDTLFHRY 206 >gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] Length = 238 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 14/205 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D E G D D VR++ + + F+ + ++ I +T Sbjct: 40 FVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVG--DTFYVQVKPSQALPKDSTLIHRLT 97 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + + + F ++ + + D + R + Sbjct: 98 PHQLSDAPP----LATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLR------YYGARL 147 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + R D S+ L L G+ H+A D T Sbjct: 148 SNPCLDTMHLAQTHTEMQWQQYHDRFRMD--ISYNLAALGAKYGLPAFTHHNAYEDALQT 205 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 L + +K K Sbjct: 206 AYLFIYLVKKMRSQGVVTLHDLYKA 230 >gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] Length = 375 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + + A R D E +++ + P +TGI Sbjct: 2 TYAVLDIETTGGKFDEEGITEIAIHRFDGH-EVVDTFISL---INPERPIQPYVQKLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + ++RI + ++ +N +FD R F R Y+ Sbjct: 58 DPKMVQTAPRFH-QVAKRIVEITRDS---VLVAHNAQFDYRILRTEFRRLGYNF------ 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 A S L L + GI N H A D A Sbjct: 108 --------------ERKTLCTVDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALA 153 Query: 184 TLALVWLIREKKP 196 TL L+ + ++ Sbjct: 154 TLKLLQHLLDRDT 166 >gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM 4028] gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM 4028] Length = 244 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 16/201 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D E G + VRV F + I IT Sbjct: 46 YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGE--SFSVLVRPSIPLPKTSTLIHRIT 103 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + AE + +F T I+G++ D + +N Sbjct: 104 PEAIAQAP-PLAEVLPELIEFCK--GTLIVGHHVG-LDMSFLNRACRKNHGQPLANP--- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADVYA 183 LD MR + + S+ L DLA + AH+A D Sbjct: 157 ------CLDTMRMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQ 210 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L + +K Sbjct: 211 TAYLFIYLAKKIAGNRPLTLR 231 >gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4] Length = 236 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 27/196 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + LDR + G+ + + + + PA D P+A+ + GITP Sbjct: 4 IVFDTETTGLESKLDRVIEIGGIELFNHF-PTGRSFHVYINPA-DRAIHPDALAVHGITP 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + V A+ + FF + +N FD + F R Sbjct: 62 EFLKDKPV-FADIVEDLVAFF---DGAKWVAHNATFDMGFINAEFERLGRPLV-----GP 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 113 EHVIDTLSLARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 159 LAEVYIEMLGGRQATF 174 >gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 468 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D Q VRV + + + Sbjct: 275 SYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLV--DPGIPIPASSSRVHKV 332 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E RR H+F +I +N FD + R R + Sbjct: 333 TDAMVAGKPDI-GEAGRRFHRF---AKGSVIVAHNAPFDMAFLRRHRDRMGVEW------ 382 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 +LD + + + L L G+E A H A D Sbjct: 383 ----DHPILDTVLLSAVLF----------GASETHTLDALCQRLGVEIPQALRHTALGDA 428 Query: 182 YATLALVWLI 191 AT ++ ++ Sbjct: 429 NATAQVLVMM 438 >gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB 41171] gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010] gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum PRL2010] gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] Length = 180 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 28/198 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V+ D ET G D +F V+V + +++ + +P + Sbjct: 7 LPDDYVVLDLETTGVSWYRDTIIEFGAVKV-VDRKPVDTYQQL---VNPMRNLNPFITQL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGITP ++ + F +IG+N ++FD + R Sbjct: 63 TGITPDMLEPAPTLD----TVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRIL----- 113 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 N D L + R++Y +L DL I V H A + Sbjct: 114 -HHAVPNRIIDTLQMSRSMYPQYN-------------RHRLVDLIQRFDIADVEEHRALS 159 Query: 180 DVYATLALVWLIREKKPK 197 D T +R+++ + Sbjct: 160 DAEQTQMCFEYMRDEQRR 177 >gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu] Length = 375 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTSLVNPGQPIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + + F + + +N FD + R F R Sbjct: 70 DAMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERIGLAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPSARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRQLHE 174 >gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM 2489] gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM 2489] Length = 216 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 62/208 (29%), Gaps = 18/208 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV +D ET G + + V+ + I KP +T Sbjct: 20 KTFVAFDTETTGLKAEKEFIIEIGAVKFNCDG-IIGEPFDILIKPP--IELPQFIKDLTH 76 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E + F T ++ +N +FD + + R + Sbjct: 77 ITDKMISCCP-CAKEAVPQFLNFVGGKET-VLVAHNAQFDLGFINSELKRFSHPEL---- 130 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L+ R Y ++ +KLQ LA GIE AH A D Sbjct: 131 --PNVCIDTLNASRWAYPDF-------IKEQEKGQYKLQSLAKRFGIEAKAAHRANDDAR 181 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210 + + I + + K Sbjct: 182 LCMEIFKRIISDTMDKQKNFSIDKIKRN 209 >gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 315 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83] gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83] Length = 259 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 61/205 (29%), Gaps = 27/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N + +D ET G D+ DR + + ++V + E + + PE+ I Sbjct: 5 LKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSE----ECKTRRINPERPIPPESTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + ++ + Q+ + G+N+ RFD F R D Sbjct: 61 HGIRDEDVKDCP-PFRSVAKSLAQWIE--GCDLAGFNSTRFDVPMLVEEFLRAGVDIDLR 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + NAH A+AD Sbjct: 118 HRKL----IDVQTIFH----------------KMEPRTLEAATRFYCNRTLENAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 AT + ++ E + Sbjct: 158 TRATYDVFKAQLDRYEGTLENDMAF 182 >gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 204 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 30/201 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + VI+D+ET G + DRP + VR+ + +E + T Sbjct: 5 KNIVIFDFETTGLSPKMGDRPIEIGAVRI-KNGLLVERFQALM---HPGIRISSFIENFT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + AE R F N + +N FD + +R Sbjct: 61 GISNKMLAEA-KPCAEVMGRFCDFIGSDN---LVAHNASFDKRFLDAELHRI-------- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 G S ++ A A + KL L I+ H A D Sbjct: 109 -SRGYSGQISCSMLLARRVLR-----------DAPNHKLGTLVDYLNIQTEGVYHRALFD 156 Query: 181 VYATLALVWLIREKKPKLFEY 201 T + + K + ++ Sbjct: 157 SEMTANVWLAMINKIQQHYKM 177 >gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis KF147] Length = 277 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 25/193 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V++D+ET G + Q V+ D ++ E + Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYV--STEITQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI P L +E E F ++ +N FD + Sbjct: 59 TGIKPADLLNQPTIE-EILPEFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + + +S+ L++ + + +HDA D Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155 Query: 181 VYATLALVWLIRE 193 T L +++ Sbjct: 156 CLITAKLYQYLQK 168 >gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] Length = 277 Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 25/193 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V++D+ET G + Q V+ D ++ E + Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYV--STEITQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI P L +E E F ++ +N FD + Sbjct: 59 TGIKPADLLNQPTIE-EILPEFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + + +S+ L++ + + +HDA D Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155 Query: 181 VYATLALVWLIRE 193 T L +++ Sbjct: 156 CLITAKLYQYLQK 168 >gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC 10987] Length = 315 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310] gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310] Length = 284 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 82/267 (30%), Gaps = 23/267 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++D ET G D+ DR Q + ++V ++ E + + E + Sbjct: 5 LKKPIIVFDLETTGLDLVKDRIIQISYIKVFPDGKE-ERENIL---VNPEKNIPLEVSAL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-------- 112 TGIT + + ++++ + F GYN+ FD F R Sbjct: 61 TGITNEDVADAPK-FQDIAQKLAEEFK--GCDFAGYNSNHFDIPILAEEFLRAGIDFDFS 117 Query: 113 --NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANG 168 N D+ D + D +++ + L N Sbjct: 118 KSNLVDAQAIFHKMERRNLAAAYKFYCGRKMEDDFEAHRADQDAEVTYRVLMGQLDKYNP 177 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN-KNQLRKLIDIQNMTPLVHVS 227 A A + L + F +R+ K K++ ++ +P+ Sbjct: 178 ETAEEADRALPN--DMKYLAEFSKMNDNVDFAGRIVWRDMKGADGKVLTTEDGSPMRQEV 235 Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVI 254 FG + + P Y ++ Sbjct: 236 FNFGKYKGCAVTEV-LLKDPGYYSWML 261 >gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555] gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease [Clostridium kluyveri DSM 555] Length = 441 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 44/346 (12%), Positives = 91/346 (26%), Gaps = 33/346 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++FV+ D ET G + D + A + E I++ + P I Sbjct: 129 DNFVVVDLETTGLEPTRDYIIEIAAAKY-ENNEIIDTYTTL---VNPEVFIPPNITNINH 184 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I E + F + + +N FD + Sbjct: 185 IDNDMVKDCP----EIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLY------ 234 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + R + KL + I+ ++H A D Y Sbjct: 235 -LNNPIIDTLPISR-------------KLFSEIENHKLGTIKEYLNIDVQDSHRALPDCY 280 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + + + + + L + + + + + Sbjct: 281 VCGQI--YLEYSTKEKNKKALANIKLHSDIGLNKEECYSIVKEILKKHNKDLTYVRYG-F 337 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + + + L + + L LA+ D P + NK I Sbjct: 338 TSNYFDIRAFYNFLRLKLKGKKYYALLDNSLAEINSMIPDLTLKYEVAP--KSESNKIRI 395 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348 L+ +C++++ R ++ ++ A Y Sbjct: 396 LINSPEDLYILEPIIIQAFDKCIDSMEYYRNNVSVAEKNIAEYLNT 441 >gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] Length = 469 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 28/191 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + V+ D ET G + DR + A +R++R E + E + + Sbjct: 3 LPDSLVLIDVETTGANPVSDRVTEIAVLRIER-GEIVGRWESL---VNPERPIPALIQRL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + AE + + + + +N RFD + RN F R Sbjct: 59 VGITDEMVAGAP-TFAELADSVRGHL---DGAVFVAHNARFDYGFIRNEFSRLGQ----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +L ++ A P+ + L L +G H A D Sbjct: 110 -----QFEASVLCTVKLSRALYPEHHR----------HGLDALIERHGFTCGARHRAMGD 154 Query: 181 VYATLALVWLI 191 L+ Sbjct: 155 TDVLWQFARLV 165 >gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] Length = 1271 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 70/491 (14%), Positives = 134/491 (27%), Gaps = 65/491 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D +F G V + I+S ++F +TGI Sbjct: 220 TYCVFDLETTGLSSRFDHIIEFGGQIV-KDRACIKSLQMF---IKPPVALSAFTTELTGI 275 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A+ I F I+ +N FD + + R Sbjct: 276 TEEHMKNA-KSFADSIDEILDFI---GDSILVAHNATFDYNFLNDELARIGRKPI----- 326 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D LD+ R++ A ++L +A + GI + AH A D Sbjct: 327 -MNPVIDTLDLARSMQA-------------DRKGYRLGQIARSYGIRYDEDVAHRADYDA 372 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL----VHVSGMFGASRSNT 237 + L +N +L+ + ++ + V V A Sbjct: 373 EVLAQTY-------MNMLNDLKHIKNLQELQDMQTAESFRKVRVKHVTVLAKNMAGLKEL 425 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQ---LAKRLFTSHDELKGLVPVPIKE 294 + + H +Y + ++ + L L G V + Sbjct: 426 FELVTL-SHTKYLAYSSKSTNNIVAEPRILRSEIEKRRINGNLLIGSSCLNGEVFDMAQT 484 Query: 295 ---------VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY 345 + + P++ + R E L + + D+ Sbjct: 485 RNEQTLEEVMQFYDYIEIQPLENYRHLVERDSISSMDRLKEILKSIVSAADKLDKLLVAT 544 Query: 346 NK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFF 401 Y + + +Y A + I + + + L E + Sbjct: 545 GDCHYVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRRKFKAPDQHFRTTKEMLKEFAW 604 Query: 402 RYRARNFPHTLSEKEKQDWLEHR------KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEG 455 + + K + + K L IE KL + E + Sbjct: 605 --LGEQRAYDMVIKNTKLIADMIQEVKPVKDRLYPPDIEGSDQKLTDICYENAHKKYGPV 662 Query: 456 LINALYEYLQW 466 L + + L+ Sbjct: 663 LPEIVEKRLEK 673 >gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 208 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 53/202 (26%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G DR + V + + + T Sbjct: 7 NTLVVLDFETTGLSPNQGDRAIEIGAVLI-EDGVITQRFSELM---NPGFRISRFIEDYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q E R F + N + +N FD + F + + Sbjct: 63 GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 R + F + A + +L L + H A AD Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L + + F Sbjct: 159 AEMTGHLWLAMLADLQQEFGLC 180 >gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34] gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34] Length = 207 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 57/227 (25%), Gaps = 30/227 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G DR + V++ E ++ + + T Sbjct: 8 DSVVVLDFETTGLSPNQGDRAIEIGAVKL-VNGEIVDQFQQLM---NPGFRVSSFIEGYT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ E F N + +N FD + Sbjct: 64 GISNNMLRTAPPCH-EVMDAFADFIGDAN---LVAHNASFDQRFLDAELADIGRY----- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180 F+ + A + KL L I+H H A AD Sbjct: 115 ---------------YTGTFTCSMLIARRLYQHAPNHKLGTLVDFKHIKHNGVFHRALAD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 T L ++ E + + + L H Sbjct: 160 SEMTARLWLVMLEDIKRQYNLHTISFELMIKLAKTPKAKIDTLFHRY 206 >gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri DSM 20016] gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative [Lactobacillus reuteri DSM 20016] gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] Length = 954 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G +V DR Q V V + E I E K V +TGI Sbjct: 19 YSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFET---KINPREKIPRSIVQLTGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E + + I+ + +N+ FD + R Y S Sbjct: 75 EDKDVRKAPLFE-DIAGTIYSLLAE---TTFVAHNVNFDFPFLNAELERAGYPSLS---- 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + A SF+L+DL + IEH + H A +D A Sbjct: 127 -----IPAIDTVTLSQILL----------PTAKSFRLRDLTSSLHIEHDHPHSAVSDAEA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ + ++ +L + Sbjct: 172 TADLLNDLLKRVQELPTLTLE 192 >gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] Length = 231 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 75/252 (29%), Gaps = 27/252 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ + +F I+ +N FD + + + N+ Sbjct: 57 KGSDPIDV----VLQRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENAV 106 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L++ R +Y + +L L I H A D AT L Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 W + + ++ + Y + + + + P A + Sbjct: 154 WKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213 Query: 249 YKDSVIGCNLSG 260 Y V S Sbjct: 214 YFYRVPRIPRSQ 225 >gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] Length = 954 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 28/185 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G +V DR Q V V + E I E K V +TGI Sbjct: 19 YSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFET---KINPREKIPRSIVQLTGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E + + I+ + +N+ FD + R Y S Sbjct: 75 EDKDVRKAPLFE-DIAGTIYSLLAE---TTFVAHNVNFDFPFLNAELERAGYPSLS---- 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + A SF+L+DL + IEH + H A +D A Sbjct: 127 -----IPAIDTVTLSQILL----------PTAKSFRLRDLTSSLHIEHDHPHSAVSDAEA 171 Query: 184 TLALV 188 T L+ Sbjct: 172 TAELL 176 >gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 203 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 30/195 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G A+ DR + A V V ++ + + Sbjct: 1 MKPIAVIDFETTGLSPAMGDRATEVAIVLV-EGGRVVDRFQSLM---NAGVRIPAFITSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + + + +N FD + R Sbjct: 57 TGITNAMVASAP----DAATVMTDANRFVGNAPLVAHNASFDRKFWEAELSRAGE----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 RA F+ + A S KL L + + AH A A Sbjct: 108 ---------------RASQPFACTMLVSRRLYPQAPSHKLGVLVDYHHLPKAGRAHRALA 152 Query: 180 DVYATLALVWLIREK 194 D +L+ I+ Sbjct: 153 DAEMAASLLGQIQHD 167 >gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6] gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6] Length = 204 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 62/213 (29%), Gaps = 35/213 (16%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPNLGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIESYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E +F + N + +N FD + R D Sbjct: 61 GITNNMLRSAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCD----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKAD 180 F+ + A S KL +L I++ H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGIFHRALAD 156 Query: 181 VYATLALVWLIREKKPKL-----FEYLYDYRNK 208 T L L+ E+ +K Sbjct: 157 AQMTAKLWLLMVEELEHSGIANPSFQFMQTVSK 189 >gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] Length = 934 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 57/203 (28%), Gaps = 32/203 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +V D ET G D D + VR +T Sbjct: 4 MNMYVAIDIETTGLDPEKDCIIEIGAVRF-SNRRVEAEWSSL---IKPTKNIPSFITQLT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + + F N I+G+N + + N Sbjct: 60 GITNDMVRKAPTI-QDVIGDLAHFV--GNCPIVGHNIRFDLSFLQKQHILWN-------- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N D ++ A+ + L LA + GI H A D Sbjct: 109 ----NHVIDTYELA-------------SVLLPTASRYNLGVLAQSLGILLPATHRALDDA 151 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T AL + EK +L L + Sbjct: 152 RVTHALFIALLEKASELPVDLLN 174 >gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] Length = 933 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 28/208 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V+ D ET G D+ Q A + V + ++S F + Sbjct: 3 PHKIVVVDLETTGNSPKKGDKIIQLAAMVV-QGGAVVDSYTTF---VNPGITIPSFIEEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +E + ++ + + + +N++FD + + Y Sbjct: 59 TGIHDGMVKDAPE-FSEIAPKVLELL---DGAVFCAHNVQFDLGFLQAELEEAGY----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D +++ + A S+KL +L+ + H H A +D Sbjct: 110 -NPFSGPSFDTVELAKI-------------TLPTADSYKLTELSDRFSLNHSRPHQADSD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNK 208 T L+ EK KL + K Sbjct: 156 ALVTAELLIHFIEKLAKLPLVTLEQLEK 183 >gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 74/253 (29%), Gaps = 29/253 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + F + I+ +N FD + + + N+ Sbjct: 57 KGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENA 105 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L++ R +Y + +L L I H A D AT L Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 W + + ++ + Y + + + + P A + Sbjct: 153 AWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI 212 Query: 248 RYKDSVIGCNLSG 260 Y V S Sbjct: 213 NYFYRVPRIPRSQ 225 >gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 876 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A +++++ E ++ E F ++ ++ Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKSVK----DSYYVH 562 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + ++ ++ I+G+N + + N + Sbjct: 563 GFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKT 620 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 621 F------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I EK + +K+ Sbjct: 662 IATGELLVRAINEKIRETSMERMALMSKH 690 >gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1] gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1] Length = 318 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ ++ +P + GI Sbjct: 32 NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ +++G+ + R +F + IIGYN NF + Sbjct: 90 TEEQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + +L D GI V AH D Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + + + KN Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213 >gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40] gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 215 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + N V+ D+ET G + DR + VR+ E ++ + + Sbjct: 11 LANSVVVLDFETTGLSPDMGDRAIEIGAVRL-HNGEIVDRFQALM---NPGFQISGFIAS 66 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGI + E + N + +N FD + YR Sbjct: 67 YTGIDNSMLAKAP-PCDEVMDAFANYIGNDN---LVAHNASFDKRFLDAELYRIGRSY-- 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178 D + A P+ KL L ++ A H A Sbjct: 121 --------SGDFTCSLLAARRLFPNAEN----------HKLGTLVKHTKLQSDGAFHRAL 162 Query: 179 ADVYATLALVWLIREKKPKLF 199 D T + ++ + + + Sbjct: 163 YDSEMTAKVWMVMLMQLQQAY 183 >gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] Length = 328 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 30/216 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + + D+ET G + A DR + V V + E + D A +I Sbjct: 14 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLI-RVHRDI----GAQWI 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ + + E +R + + + +N+ FD + + + R D Sbjct: 69 HHISAVELIHAPEFEG-IARELRDLLA---GRVFVAHNVAFDSKFLLSEYRRLGTDIPVN 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S +L M+ + G L D GI++ +AH A +D Sbjct: 125 SHT-------MLCTMKLSRSLIGVG-------------SLADCCREFGIDNEDAHSALSD 164 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 +AT L+ + + P+ + + + Sbjct: 165 AHATALLLGRLMDADPEWSGWRRRLDAAEEAGEHWP 200 >gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] Length = 474 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 28/189 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G DR + A +R++R + ++ E P +TGI Sbjct: 7 YVLVDLETTGAHPLRDRITEIAILRIER-GQLVQRWESL---INPGVPIPPTIQGVTGID 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + + C+ +N RFD + + + + Sbjct: 63 DTMVAGAP-DFAAVADTVAALLDD---CVFVAHNARFDYGFLKTAYAALGREFDA----- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L ++ A PD + L + +G+ H A D Sbjct: 114 -----PVLCTVKLSRALYPDHHR----------HGLDAIIERHGLACGARHRAMGDTEVL 158 Query: 185 LALVWLIRE 193 ++ + Sbjct: 159 WQFARVVEQ 167 >gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] Length = 874 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 25/195 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E G D D Q AG+R+ R + + ++ + Sbjct: 511 ENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEF----KRLLRARRSVGDSYRVHK 566 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ ++G R F +I +N+ +D + R + Sbjct: 567 ISDAILQQEGEEPEAVLREFCAF---AEGAVIVGHNVTYDLSILGSELARLGLPPLSY-- 621 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D LD+ R Y + KL+ L + H + HDA DV Sbjct: 622 ---QRYYDTLDIFRRFY-------------PNLPNHKLEYLGEFCKVSHRSTHDAMDDVC 665 Query: 183 ATLALVWLIREKKPK 197 AT ++ EK + Sbjct: 666 ATAEILTYAIEKNIR 680 >gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016] gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 444 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 44/346 (12%), Positives = 91/346 (26%), Gaps = 33/346 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++FV+ D ET G + D + A + E I++ + P I Sbjct: 132 DNFVVVDLETTGLEPTRDYIIEIAAAKY-ENNEIIDTYTTL---VNPEVFIPPNITNINH 187 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I E + F + + +N FD + Sbjct: 188 IDNDMVKDCP----EIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLY------ 237 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + R + KL + I+ ++H A D Y Sbjct: 238 -LNNPIIDTLPISR-------------KLFSEIENHKLGTIKEYLNIDVQDSHRALPDCY 283 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + + + + + L + + + + + Sbjct: 284 VCGQI--YLEYSTKEKNKKALANIKLHSDIGLNKEECYSIVKEILKKHNKDLTYVRYG-F 340 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + + + L + + L LA+ D P + NK I Sbjct: 341 TSNYFDIRAFYNFLRLKLKGKKYYALLDNSLAEINSMIPDLTLKYEVAP--KSESNKIRI 398 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348 L+ +C++++ R ++ ++ A Y Sbjct: 399 LINSPEDLYILEPIIIQAFDKCIDSMEYYRNNVSVAEKNIAEYLNT 444 >gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734] gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734] Length = 198 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G +R + A + + R E + + E +TGI+ Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHI-RNGELQDKYTTL---LNPNLSVPQEITDLTGISD 68 Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------------NTCIIGYNNIRFDDYYSRNIFYRN 113 +E + F +T + +N+ FD + ++ R Sbjct: 69 GLLADKP-TFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRT 127 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + + R + + + + ++L ++A I H Sbjct: 128 QLKNSADANRPYTPRL----------VCTAEASRTLIPRESVGRYRLGNVASYLKIPHRP 177 Query: 174 AHDAKADVYATLALVWLIRE 193 H A +D AT ++ + Sbjct: 178 LHRAMSDALATYDVLRALST 197 >gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] Length = 410 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 28/199 (14%) Query: 5 FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G R + A V D + + D P+ I GI Sbjct: 2 YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTL---LNPDRDLGPQ--HIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ + + + ++ Q S + +N+ FD + F R Sbjct: 57 KARQVIDAPK-FGDIAGQLIQMLS---GRTLVAHNLPFDLRFLSAEFERLG--------- 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + W + S L + A G++ H A +D A Sbjct: 104 ---------HQLTYNHHLGVCTMNWSTTFLEGASRSLPECCKAAGVQLTGWHSALSDAEA 154 Query: 184 TLALVWLIREKKPKLFEYL 202 T AL+ + Sbjct: 155 TAALLKHYINAARGGVPWH 173 >gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] Length = 180 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 28/198 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V+ D ET G D +F V+V + +++ + +P + Sbjct: 7 LPDDYVVLDLETTGVSWYRDTIIEFGAVKV-VDRKPVDTYQQL---VNPMRNLNPFITQL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGITP ++ + F +IG+N +RFD + R Sbjct: 63 TGITPDMLEPAPTLD----TVLPDFLRWCGDDAMIGHNIMRFDIKFIDLAAQRIL----- 113 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 N D L + R++Y +L DL I V H A + Sbjct: 114 -HHAVPNRIIDTLQMSRSMYPQYN-------------RHRLVDLIQRFDIADVEEHRALS 159 Query: 180 DVYATLALVWLIREKKPK 197 D T +R+++ + Sbjct: 160 DAEQTQMCFEYMRDEQRR 177 >gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 260 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 51/194 (26%), Gaps = 27/194 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D ET G + DR + V++ + E A I GIT Sbjct: 10 LVFFDLETTGLNPLKDRIVEITLVKLLPDGTE----ESRSRLIDPGIPIPETATAIHGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ F + G+N +FD F R D Sbjct: 66 DDRVAGQP-SFNRIAKSFRDFLE--GCDLCGFNIKKFDIPMLEAEFRRAGVDF----SRA 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G D + + + +L G + N H + AD A Sbjct: 119 GRRIIDTQVIFHKFHPRGLE----------------AAYSLYCGKQLANLHSSDADARAC 162 Query: 185 LALVWLIREKKPKL 198 ++ Sbjct: 163 AEILSAQLAAHESE 176 >gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16] gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16] Length = 317 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 24/211 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET G + DR + AG++V R + + P D+ +P + G Sbjct: 33 DDYTMLDIETTGLSLYRDRITELAGIKV-RNGKVVAEYSQLVKYPKDNKVPR-FITKLNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I L +G+ E F I+GYN NF + Sbjct: 91 IDEALILANGMPVKEAITEFRNFI--GGDVIVGYNVNFDL----------NFIYDLWEKF 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +DV+ F + +L D GI AH D Sbjct: 139 QLKKLSNNYIDVLHFSRVFF----------KKESHNRLLDCIRRLGISESEAHRGLKDSL 188 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 T A+ + R++ K+ + Sbjct: 189 DTKAVFDIYRKQFTPEMLNEVKDSLKSCVLT 219 >gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 456 Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 74/240 (30%), Gaps = 31/240 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + +R + A +D+ +S +TGIT Sbjct: 2 YTVVDIETTGNGIYGNRITEIALFNIDQ-GRIADSYSTL---VNPGCEIPAFITGLTGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + +I F + + +++ FD R F R D R Sbjct: 58 TAMVRNAP-DFSEIAPKIDAF---SSGRVFVAHSVNFDYPIVRKEFERCGLDFGRKK--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L + I + H A D AT Sbjct: 111 -------LCTVRLSRRVF----------PGLRSYSLGKLCRSLEIPLSDRHRAAGDARAT 153 Query: 185 LALVWLIREK--KPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIA 241 L+ E+ + R++ + +++ L G++ S +I Sbjct: 154 ALLLLRAMEQPGGQDTIAGFLNARSREGTLPPHLPLESFRQLPEAPGIYFFKDSKGNVIY 213 >gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] Length = 242 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ + DP A+ + GIT Sbjct: 4 IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--INPEREIDPGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R S + Sbjct: 61 NEFVADKPK-FAEVVAEIRDYVQGAEAII---HNAAFDLGFLDMEFRRLGLPS-FREHLD 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 G+ D L R ++ L L G+ H H A D Sbjct: 116 GH--IDTLLEARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQNTLVIDML 180 >gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis CV56] Length = 794 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 42/319 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E + ++ Q V V E +E+ P +T Sbjct: 4 MTRYAVVDLEATDAHSSENKIIQIGIVLV-EDGEIVETFSTE---VNPHEPLLPRISELT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ ++ +E + ++ + + + +N RFD F + Sbjct: 60 GLSDKQLKTAPE-FSEVAAKVRELLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N R D +D+ R Y + L+ L+ + H + H A +D Sbjct: 112 --NEMLRVDTVDLARVFYPTFE-------------KYGLESLSEKLDLAHDHPHAAVSDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231 YAT L+ I K KL + + + +K L++ +D + P Sbjct: 157 YATAELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNI 216 Query: 232 ASRSNTALI---APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 A+R A + +P+ I + L L + T Sbjct: 217 ATRKFRASVSKKSPLTALSANFSENISRLGLSSRSKQEKL--AHLMETELTHLQASFIEA 274 Query: 289 PVPIKEVHLNKCPILMPID 307 P + + + PIL Sbjct: 275 PTGLGKTYGYLLPILASGK 293 >gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 482 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 28/192 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D E+ G DR + A +RV E + E A P + Sbjct: 3 LPSRLAFIDVESTGAHPVRDRITEIAILRV-EDGEVVARWESL---VAPGQPIPPLIEEV 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + + C+ ++ RFD + RN F R + Sbjct: 59 TGISDAMVAEAPAFEV-LADTVAALLE---GCVFVAHSARFDYGFIRNAFTRIGREFEA- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +L ++ A P+ + L L +G+ H A D Sbjct: 114 ---------PVLCTVKLSRALYPEHHR----------HGLDALIERHGLVCAARHRAMGD 154 Query: 181 VYATLALVWLIR 192 V V + Sbjct: 155 VEVLWQFVRGLE 166 >gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille] gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 195 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 28/192 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D ET G ++ DR + V VD I+ F + Sbjct: 3 LNEKLIFVDLETTGANLVNDRITEIGIVAVDPDGC-IDRWSTF---VNPGRPIPEFIQGL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + E + + + + +N RFD + + F R+ + Sbjct: 59 TGISDEMVESAPMFET-LADTVRERLQDG---LFIAHNARFDYGFLHHAFVRSGHVLNA- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++L ++ A L L + + H A AD Sbjct: 114 ---------EMLCTVKLSRALF----------PAEKKHNLDSLIARHDLIPEARHRALAD 154 Query: 181 VYATLALVWLIR 192 L + Sbjct: 155 ADLLWQLWRKLN 166 >gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046] Length = 926 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 28/232 (12%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + I D ET G A DR Q A + + + WE ++ F + Sbjct: 4 SQKYAIVDIETTGHSPASGDRMIQIA-IVIMQGWEIVKKYSTF---INPGKPIPLFIQDL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + + ++ I++ + +N FD + + F R Sbjct: 60 TNITDEDVKDA-LPFEAYADYIYELLE---GAVFVAHNTDFDLNFLQAEFNRAGL----- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D +++ + S+KL DLA I +AH A D Sbjct: 111 -SKWHGKKIDTVEL-------------TKILFPMSLSYKLSDLANDFNILLQSAHRADDD 156 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232 AT L+ E+ L + +K R D+ + V A Sbjct: 157 ALATAYLLKHCWEELLTLPLVTLEQLHKRSFRLRTDLAQLFFDALVIKRNKA 208 >gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403] gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis Il1403] Length = 794 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 42/319 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E + ++ Q V V E +E+ P +T Sbjct: 4 MTRYAVVDLEATDAHSSENKIIQIGIVLV-EDGEIVETFSTE---VNPHEPLLPRISELT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ ++ +E + ++ + + + +N RFD F + Sbjct: 60 GLSDKQLKTAPE-FSEVAAKVRELLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N R D +D+ R Y + L+ L+ + H + H A +D Sbjct: 112 --NEMLRVDTVDLARVFYPTFE-------------KYGLESLSEKLDLAHDHPHAAVSDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231 YAT L+ I K KL + + + +K L++ +D + P Sbjct: 157 YATAELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNI 216 Query: 232 ASRSNTALI---APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 A+R A + +P+ I + L L + T Sbjct: 217 ATRKFRASVSKKSPLTALSANFSENISRLGLSSRSKQEKL--AHLMETELTHLQASFIEA 274 Query: 289 PVPIKEVHLNKCPILMPID 307 P + + + PIL Sbjct: 275 PTGLGKTYGYLLPILASGK 293 >gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CNEVA-9066] gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055] gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger B] gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. Ames] gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis str. Sterne] gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] Length = 315 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRIMSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238] gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238] Length = 227 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + N V+ D+ET G DR + V++ ++ + + Sbjct: 26 LANTVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGVIVDRFQKLM---NPGFRVSSFIAN 81 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT + + + +H+F C + +N FD + D Sbjct: 82 YTGITNAMLMGAD----DCATVMHEFADFIQGCNLVAHNASFDQRFLDAELDAIQRD--- 134 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178 F+ + A S KL +L + I++ H A Sbjct: 135 -----------------YDGTFACSLLVSRRLTQEAPSHKLGELVAYHQIDNDGVFHRAL 177 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD T +L ++ + + Sbjct: 178 ADAEVTASLWQVLLDTLESDY 198 >gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] Length = 241 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 29/190 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + + + + F + L P+A+ + GIT Sbjct: 5 IVLDTETTGFDPKTGDRLIEVGCIEI-QDLLPTGR--TFHRFVNPERLIPPDAIRVHGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 K E + + +F + +N FD + + Sbjct: 62 DDKVKDAPKFH-EIADDLIEFI---GDAPMIAHNAGFDRNFIDFEYKLCGRPI-----TG 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + +A + P+ L L + V H A D Sbjct: 113 ETRWIDTLKLAQARFPGMPN--------------SLDALCKRFKVSLVERTLHGALIDAR 158 Query: 183 ATLALVWLIR 192 + +R Sbjct: 159 LLAEVYLELR 168 >gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] Length = 1432 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 64/473 (13%), Positives = 128/473 (27%), Gaps = 44/473 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D ET G +F + + + + F +TGIT Sbjct: 401 YISFDIETTGLSPRYHEIIEFGASII-KNGSIVAREQFFIKASKP---LSSFTTNLTGIT 456 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +G+ RI + F I +N +FD + N Y S+ Sbjct: 457 DKMLQEEGIELKTALERILKLFENK---IALAHNAQFDMNFVFQKLLDNCYAIPSISF-- 511 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D L + R I+ + +L D G +AH A D Sbjct: 512 ----VDTLMISRIIF-------------PNKSKHRLGDYTSNLGINYSVDDAHRADYDAE 554 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 +L + Q L + + ++ + L+ Sbjct: 555 ILAQAWIASISHLAQLNLNNLSDLHNYQNSNLHAKKFSNEVSIIAKNQIGLKKLFKLVTK 614 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + + + + L T + ++ IK + P Sbjct: 615 TLTERFFDSPKLFLEDLEKDQDLLVGSAGLNGFLLNTLFYKSDLVLREYIKLYDYVEIPS 674 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 + K E ++ + L L+ A+ + Y L Sbjct: 675 ISN----FKHWIEYEDFTLEQIQDGLRYLINLALEHSKIVIAVGDVRYIDKPGKAAYDLL 730 Query: 362 DGFFADVDRQI-MDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLS 413 A + + R + +++ L EL ++ +N L Sbjct: 731 IYAKAIGGDRHYLYEYRRRHNLKTPERFFLTTEQMLEEFEFLGKELAYKIVVQN--TNLI 788 Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + E KK L + ++ KL+ L + + E L + ++ Sbjct: 789 ADSIDNI-EVIKKDLYTPKFDDSHEKLKDLVYKTAHKKYGEVLPEIIENRIKK 840 >gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit [Lactococcus lactis subsp. lactis KF147] Length = 794 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 42/319 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E + ++ Q V V E +E+ P +T Sbjct: 4 MTRYAVVDLEATDAHSSENKIIQIGIVLV-EDGEIVETFSTE---VNPHEPLLPRISELT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ ++ +E + ++ + + + +N RFD F + Sbjct: 60 GLSDKQLKTAPE-FSEVAGKVRELLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N R D +D+ R Y + L+ L+ + H + H A +D Sbjct: 112 --NEMLRVDTVDLARVFYPTFE-------------KYGLESLSEKLDLAHDHPHAAVSDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231 YAT L+ I K KL + + + +K L++ +D + P Sbjct: 157 YATAELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNI 216 Query: 232 ASRSNTALI---APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 A+R A + +P+ I + L L + T Sbjct: 217 ATRKFRASVSKKSPLTDLSANFSENISRLDLSSRSKQEKL--AHLMETELTHLQASFIEA 274 Query: 289 PVPIKEVHLNKCPILMPID 307 P + + + PIL Sbjct: 275 PTGLGKTYGYLLPILASGK 293 >gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 27/185 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ T + P EA+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELINKF-PTGRTFHKYINPQ-GRQVHAEALAVHGISN 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L AE +FF + + +N FD + R + Sbjct: 62 EQLLDKP-TFAEILDEFLEFF---DGAKLVAHNAMFDLGFINAELARLGQAEIQVE---- 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 D L + R + P+ L L GIE+ + H A D Sbjct: 114 -RVVDTLALARRKHPMGPN--------------SLDALCKRYGIENGHRTLHGALLDSEI 158 Query: 184 TLALV 188 + Sbjct: 159 LAEVY 163 >gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 458 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 93/328 (28%), Gaps = 39/328 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D + ++ + V +TGI Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGH-QVVDQFITL---VNPERPIQAFVVGLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++RI + CII +N +FD F R Y Sbjct: 58 NGMLTDAPKFH-EIAKRIIEITE---GCIIVAHNAQFDYRILSLEFDRLGYP-------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G S+ L L GI N H A D AT Sbjct: 106 ------------YERTTLCSVELSQELLPGHDSYSLGKLTKTLGIAMSNRHRADGDAIAT 153 Query: 185 LALVWLIREKKPK----------LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 + L L+ EK P+ + D + K+ +R + + + +V+G Sbjct: 154 VKLFKLLLEKDPEKTIITKAIRSFPKKHMDTKLKDLIRSVPSETGVYFMHNVNGTIIYIG 213 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 + + + H + V +L L + E+K P + Sbjct: 214 KSKNMKKRLTQHFTNDNRKSKQIQDQVETVTYQTTGTELIALLKE-NAEIKRHKPKFNRA 272 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHK 322 + K + + + + Sbjct: 273 LRRTKFKVQLTHYTDSEGYIHLKTERAD 300 >gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] Length = 291 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 26/181 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G + D + A +RV R + ++ + C +TG++ Sbjct: 128 YVVVDIETTGLNPNKDEIIELAAIRV-RGGRETDAFQ---CLVRCGGELSDAIAKLTGLS 183 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +G++ +F S +I +N FD + ++ +D + + Sbjct: 184 HSRLMAEGLILENALMNFLEFVSD---DLIVAHNAEFDIGFIQSACEELDWDDFDNDY-- 238 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R + + +L LA +E+ H A +D T Sbjct: 239 ----LDTLALAR-------------KKLPQISDHRLSSLAERLHLENRQPHRALSDCRLT 281 Query: 185 L 185 Sbjct: 282 H 282 >gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514] gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514] Length = 199 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 5/125 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +VI+D ET G D Q A VR+ S++ FF Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVRM-SNGVVC-SSDSFFSYVNPGRSISSFITSY 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT Q V + ++ +I +N RFD + RN + Sbjct: 59 TGITNQDVGDAPRV-GTVLKDFSRY--AGKATLIAHNGHRFDMKFLHAGCSRNALPTRAV 115 Query: 121 SWDNG 125 ++ + Sbjct: 116 NYHDS 120 >gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 205 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 39/225 (17%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R E ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + ++ + F + +N FD + + Sbjct: 57 TGITNEMIASAP-PVSQVMKEAAAFV---GNHPVVAHNAGFDKRFWQAELGMLG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 M A +AF+ + A S +L LA + AH A Sbjct: 107 --------------MAAEHAFACTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215 D L ++ + +K ++ Sbjct: 153 DAEIASHLWCRLQRDIGATYGVRHIDHGLMSRLQTTSKAKVATFF 197 >gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] Length = 204 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 26/198 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + + + V+V R + ++ F P D + PE +T Sbjct: 21 PEDYTVIDIETTGLNPDENEIIEVGAVKV-RDRKIVDEFSSF-VSPKKD-IISPEIRKLT 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI +E + R ++F ++G+N NF Sbjct: 78 GIDEAMIEGADQIE-DVIPRFNEFID--GEILLGHNVNFDI----------NFLYDNYER 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + D +D+++ SP+ KL+ + GI+ H A +D Sbjct: 125 YSDFYLSNDYVDLLKISRKLSPEFEN----------HKLETVLKKLGIKVDQQHRAVSDC 174 Query: 182 YATLALVWLIREKKPKLF 199 RE + Sbjct: 175 IDAHHCFEKYRETIIAQY 192 >gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 205 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 39/225 (17%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R E ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + ++ + F + +N FD + + Sbjct: 57 TGITNEMIASAP-PVSQVMKEAAAFV---GNHPVVAHNAGFDKRFWQAELGMLG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 M A +AF+ + A S +L LA + AH A Sbjct: 107 --------------MAAEHAFACTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215 D L ++ + +K ++ Sbjct: 153 DAEIASHLWCRLQRDIGATYGLRHIDHGLMSRLQTTSKAKVATFF 197 >gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] Length = 256 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + EA + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----EAKTMRINPEMHIPAEASAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + E +R I + + G+N+ RFD F R D Sbjct: 61 HGIYDEDVAKCP-TFKEVARNIANDIE--GSDLAGFNSNRFDIPVLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A+AD Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + + + + + + + + + M H +F + Sbjct: 158 TRATYEVLMAQLDRYEDLQNDVAFLADYSSFNKNVDFAGRMVYDEHGVEIFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 ++ V P Y ++ Sbjct: 218 VSEVLKRDPGYYSWIL 233 >gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] Length = 960 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 65/202 (32%), Gaps = 27/202 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G + D Q AG+R + E + +T I+ Sbjct: 24 FVAIDIETTGLNSEWDEIIQIAGMRFKGE-EVVNQFVSL---VKPKGKVPKFIEHLTHIS 79 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+ E + F I+ +NI FD + N Sbjct: 80 PQELKTAP-PIKEVLKDFCNFI---GDSILVGHNIGFDFNFLNQFIVDNGGFPISNMH-- 133 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 WD ++ R F+ D KL L GIE +NAH A AD AT Sbjct: 134 ----WDTAEIGRIYLPFTTD-------------HKLSTLVSFFGIELMNAHQADADALAT 176 Query: 185 LALVWLIREKKPKLFEYLYDYR 206 L + + Y+ + R Sbjct: 177 GKLFNALTNYILNHYGYMLNAR 198 >gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 244 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 21/191 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61 V +D ET G + + + A +RV++ +S +VF P + +P + V +T Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ +G+ E E + R + ++ +N +FD ++ + R+ Sbjct: 74 GITDEQLENEGITETEAAARFTELIG-GGRVLLVAHNAQFDLLFTAEMLRRHGNGGP--E 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L V + A+ L + N+H A DV Sbjct: 131 VLKAADYLDSLTVYKDRRAYPHKLAN-------------AILTYKLEDKVQNSHRAIDDV 177 Query: 182 YATLALVWLIR 192 A + + Sbjct: 178 AALFEVCKAMD 188 >gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri] gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri] gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri] gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri] gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 75/252 (29%), Gaps = 27/252 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ + +F I+ +N FD + + + + N+ Sbjct: 57 KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KADNAV 106 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L++ R +Y + +L L I H A D AT L Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 W + + ++ + + + + + + P + Sbjct: 154 WKLIKDAKEMHDINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNIN 213 Query: 249 YKDSVIGCNLSG 260 Y V S Sbjct: 214 YFYRVPRIPRSQ 225 >gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 453 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 106/341 (31%), Gaps = 40/341 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + + A R D E + + D +TGI+ Sbjct: 2 YAILDIETTGGKLNEESITEIAIYRFDGN-EVTDRFISL---INPEKKIDDFVAHLTGIS 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + + CII +N FD R F R +D +R + Sbjct: 58 NKMVRNAPK-FYEVAKRIIEIT---DGCIIVAHNAAFDYRILRLEFRRLGFDFHRNT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + +S+ L L + GI + H A D AT Sbjct: 111 -------ICTVEMSQRLL----------PQESSYSLGKLTRSLGIPLLGRHRANGDAMAT 153 Query: 185 LALVWLIREKKPKL---FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + L L+ K + E++ + + L+ I + P + ++ Sbjct: 154 VHLFKLLLTKDTQKTALTEFVKQNLHPSLNTHLLSILDTLPNQLGIYYIYDKKGKLIFLS 213 Query: 242 P-------VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 V H ++ + +L L L + + K P ++ Sbjct: 214 KSKNIYKRVNEHFTSENKRDLYIQKHVGEIMYELTGTTLIATLKEAQELQKK--PFLNRK 271 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335 P ++ +K + + ENL + + Sbjct: 272 KKKKSFPFVLVAHTNEKGYIQLSIEFVNTSQENLAIFESKE 312 >gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] Length = 1448 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 67/487 (13%), Positives = 137/487 (28%), Gaps = 57/487 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D +F G V + I+S ++F +TGI Sbjct: 397 TYCVFDLETTGLSSRFDHIIEFGGQIV-KDRACIKSLQLF---IKPPVALSAFTTELTGI 452 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A+ I F I+ +N FD + + R Sbjct: 453 TEEHMKNA-KSFADSIDEILDFI---GDSILVAHNATFDYNFLNDELARIGRPPI----- 503 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D LD+ R++ A ++L +A + GI + AH A D Sbjct: 504 -MNPVIDTLDLARSMQA-------------DRKGYRLGQIARSYGIRYDEDVAHRADYDA 549 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + Q + + + ++ + L+ Sbjct: 550 EVLAQT--YMNMLNDLKHIKNLQELQDMQTAESFRKVRVKHVTILAKNMAGLKELFELVT 607 Query: 242 -----PVAWHPRYKDSVIG--CNLSGDMRV-----FQDLDSVQLAKRLFTSHDELKGLVP 289 +A+ + ++++ L ++ + S L +F Sbjct: 608 LSHTSYLAYSSKSTNNIVAEPRILRSEIEKRRINGNLLIGSSCLNGEVFDMAQTRNEQTL 667 Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKP 348 + + + L P++ + +R E L +++ L A + Sbjct: 668 EEVMQFY--DYIELQPLENYRHLVERDSISSMERLKEILTCIVKAADKLDKLLVASGDCH 725 Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFFRYRA 405 Y + + +Y A + I + + + L E + Sbjct: 726 YVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRRKFKAPDQHFRTTKEMLKEFAW--LG 783 Query: 406 RNFPHTLSEKEKQDWLEHR------KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINA 459 + + K + + K L IE KL + E + L Sbjct: 784 EQRAYDMVIKNTKRIADMIGEVKPVKDRLYPPDIEGSDQKLTDICYENAHKKYGPVLPEI 843 Query: 460 LYEYLQW 466 + + L+ Sbjct: 844 VEKRLEK 850 >gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 721 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 27/186 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + + D Q R+ ++ E F + P ++ I G Sbjct: 530 TYTVFDTETTGLEPSNGDEIIQIGAARIVN--NRLLRQETFNQIVDPEIPLKPASIPIHG 587 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ H+F ++ +N FD + + R Sbjct: 588 ITEDMVRGQPNIDV-VLPAFHEFCED---TVLIAHNAAFDMRFLQLKEER---------- 633 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R + S KL + GI H+A D Sbjct: 634 ----------TNIRFTQPVLDTLLLSAVVHPNQESHKLDVILERLGITIGKRHNALEDAL 683 Query: 183 ATLALV 188 AT + Sbjct: 684 ATGEVF 689 >gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F] gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 235 Score = 94.1 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV ++ + + +TGIT Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 E R + + P I+G+N F D Sbjct: 90 DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 138 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D M+ A P +L DL + GI H A + Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188 Query: 180 DVYATLALVWLIREK 194 D T +R Sbjct: 189 DAIQTQQCFEWMRHY 203 >gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 56/211 (26%), Gaps = 27/211 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + A DR + V + F+ + D A+ + GIT Sbjct: 4 IILDTETTGLNAATGDRVIEIGCVEM-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R +R Sbjct: 61 NEFVADKPK-FAEIVNEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLGLPPFREHLSG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 +D +R L L GI H H A D Sbjct: 117 ------HIDTLREARQMF-----------PGKRNSLDALCDRLGISNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 + + + L + + Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLESGEGASAEA 190 >gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91] Length = 346 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 48/188 (25%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + V V+ + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEIGVVVVNANGT-----STWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D] gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D] Length = 242 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 56/211 (26%), Gaps = 27/211 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + A DR + V + F+ + D A+ + GIT Sbjct: 4 IILDTETTGLNAATGDRVIEIGCVEM-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R +R Sbjct: 61 NEFVADKPK-FAEIVNEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLGLPPFREHLSG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 +D +R L L GI H H A D Sbjct: 117 ------HIDTLREARQMF-----------PGKRNSLDALCDRLGISNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 + + + L + + Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLESGEGASAEA 190 >gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243] gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243] Length = 381 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 48/188 (25%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + V V+ + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEIGVVVVNANGT-----STWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] Length = 315 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRIMSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804] gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii] Length = 177 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 57/184 (30%), Gaps = 27/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G A +FA V V +P P +TGIT Sbjct: 8 FAVADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVR--TRGTVP-PFITRLTGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G+ AE F + + ++N FD + + + Sbjct: 65 QAEVDGHGIPVAEAFSAFLAFLAD---APVFFHNASFDCRFLQAAAEHTGLPFANAT--- 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R + S KLQ LA G H A ADV +T Sbjct: 119 ----HCTLQLARQAW-------------PELPSHKLQVLARHVGAA-DPTHRALADVRST 160 Query: 185 LALV 188 +A+ Sbjct: 161 VAVA 164 >gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705] gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A] gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68] gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705] gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A] gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68] Length = 235 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV ++ + + +TGIT Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 E R + + P I+G+N F D Sbjct: 90 DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 138 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D M+ A P +L DL + GI H A + Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188 Query: 180 DVYATLALVWLIREK 194 D T +R Sbjct: 189 DAIQTQQCFEWMRHY 203 >gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] Length = 681 Score = 94.1 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 72/265 (27%), Gaps = 27/265 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G + Q A ++ + I + F + +TGI Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIIAEFDEF---INPGHHLSAFTTELTGI 480 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F ++ +N FD + + R+ Sbjct: 481 TDDHVKNA-KPLVQVLKEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 530 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ R +Y L L G+ + H A D A Sbjct: 531 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 577 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+++ ++ + R L + + Sbjct: 578 TGRLLFIFIKEVAEKHGVTNLARLNLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVS 637 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268 + +Y + V + + L Sbjct: 638 LSNTQYFEGVPRIPRTVLDAHREGL 662 >gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM 1217] Length = 235 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV ++ + + +TGIT Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 E R + + P I+G+N F D Sbjct: 90 DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 138 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D M+ A P +L DL + GI H A + Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188 Query: 180 DVYATLALVWLIREK 194 D T +R Sbjct: 189 DAIQTQQCFEWMRHY 203 >gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 317 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 30/216 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + + D+ET G + A DR + V V + E + D A +I Sbjct: 3 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLI-RVHRDI----GAQWI 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ + + E +R + + + +N+ FD + + + R D Sbjct: 58 HHISAVELIHAPEFEG-IARELRDLLA---GRVFVAHNVAFDSKFLLSEYRRLGTDIPVN 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S +L M+ + G L D GI++ +AH A +D Sbjct: 114 SHT-------MLCTMKLSRSLIGVG-------------SLADCCREFGIDNEDAHSALSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 +AT L+ + + P+ + + + Sbjct: 154 AHATALLLGRLMDADPEWSGWRRRLDAAEEAGEHWP 189 >gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 392 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 50/188 (26%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G V R + V V + P +TGIT Sbjct: 15 IVFVDLETTGGSVGDHRITEVGVVEVGPNG-----VSSWTTLVDPGQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 EA + F+ + + +N FD + R+ F R + Sbjct: 70 NDMVRGAPTFEAIAA----DLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L + + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PAEKRHGLDALVERHALMPSDRHRALADADLL 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQRLH 173 >gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406] gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406] Length = 258 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 30/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V +D E+ G DR + + ++V + EV + + E+ + Sbjct: 5 LKRPLVFFDIESTGLSPEKDRIVEISLIKVYPDGHE----EVRTRRLNPECHIPEESTAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + ++ + I GYN+ RFD F R + Sbjct: 61 HGITDDDVRDCP-TFRQVAKSLASMIQ--GCDIAGYNSNRFDVPLLGEEFLRADVE---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D R + R ++K + AH A+AD Sbjct: 114 -----------VDFSRCRFIDVQTIFHKMERRTLEAAYKF-----YCDKDLTEAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM--FGASRSNTA 238 ATL ++ ++ P+ + ++ + +++ + + + Sbjct: 158 TRATLEVLKAQLDRYPEDLQNDVEFLSSFTMQQRNLDLAGRFVYNEKDEVVINFGKHKGV 217 Query: 239 LIAPVA-WHPRYKDSV 253 +A V P Y D V Sbjct: 218 PVAEVLKKEPGYYDWV 233 >gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] Length = 468 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 48/190 (25%), Gaps = 28/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G D Q VR+ P + + G+ Sbjct: 275 TYTVLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLV--NPGRPIPPASSKVHGV 332 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE RR H F +I +N FD + R + Sbjct: 333 TDAMVAGAPGI-AEAGRRFHTFARDS---VIVAHNAPFDMAFLHRHKTRMGVEW------ 382 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 +LD + + L L + H A D Sbjct: 383 ----THPILDTVLLSAVLFGASQ----------THTLDALCDRLAVTIPPNLRHTALGDA 428 Query: 182 YATLALVWLI 191 AT + + Sbjct: 429 QATAEVFGRM 438 >gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 212 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R + ++ + + V + Sbjct: 8 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RNGQVVDRFQSLM---NAGRRIPSDVVAL 63 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F + +N FD + ++ Sbjct: 64 TGITNDMIATAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGMLG------ 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 M A +AF+ + A S +L LA + AH A Sbjct: 114 --------------MSADHAFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMV 159 Query: 180 DVYATLALVWLIREKKPKLF 199 D L +++ + + Sbjct: 160 DAEMAGHLWCRLQQDISRTY 179 >gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] Length = 547 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 56/188 (29%), Gaps = 25/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D + VR+ R E F D LP +TGI Sbjct: 37 TFVVVDLETTGTRPGGDEITEIGAVRI-RGGEVQAELSTFVS--IDGVLPG-HISRLTGI 92 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + E +F ++ +N RFD + R + Sbjct: 93 APEDLVGAP-SLGEVMATFLEF---SRGAVLVAHNARFDLGFLRAAAAATGHRWP----- 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + R + +L LA G H A D A Sbjct: 144 -DPPSVCTLALARRV-----------LHRGETRGHRLGVLAAHLGATVEPNHRALQDARA 191 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 192 TVDVLHAL 199 >gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 74/253 (29%), Gaps = 29/253 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + F + I+ +N FD + + + N+ Sbjct: 57 KGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENA 105 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L++ R +Y + +L L I H A D AT L Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 W + + ++ + Y + + + + P A + Sbjct: 153 GWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI 212 Query: 248 RYKDSVIGCNLSG 260 Y V S Sbjct: 213 NYFYRVPRIPRSQ 225 >gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05] gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05] Length = 318 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ ++ +P + GI Sbjct: 32 NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ ++G+ + R +F + IIGYN NF + Sbjct: 90 TEEQIGKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + +L D GI V AH D Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + + + KN Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213 >gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri] gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri] gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri] gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri] gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 74/253 (29%), Gaps = 29/253 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + F + I+ +N FD + + + N+ Sbjct: 57 KGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENA 105 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L++ R +Y + +L L I H A D AT L Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 W + + ++ + Y + + + + P A + Sbjct: 153 GWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI 212 Query: 248 RYKDSVIGCNLSG 260 Y V S Sbjct: 213 NYFYRVPRIPRSQ 225 >gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 204 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 30/197 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G + DR + V++ E ++S + + P T Sbjct: 5 NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSPFIEGYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E +F + N + +N FD + R Sbjct: 61 GITNNMLRTAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERIDCG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 F+ + A S KL +L IE+ H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156 Query: 181 VYATLALVWLIREKKPK 197 T L L+ E+ + Sbjct: 157 AQVTAKLWLLMVEELEQ 173 >gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] Length = 270 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 17/191 (8%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A DR + A V + S C + E+ I G+ Sbjct: 93 VVDLETTGLEPATDRVIEIA-VLTVEHGSIVGSFH---CLLNPECSIPGESSNINGLRDD 148 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 AE ++ + + +N++FD + + R + Sbjct: 149 DVANSP-TFAEVAQELLPHVLNR---TLVGHNVKFDVGFLAAEYARLGHADAARVLTEQC 204 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L A + + I + + L +LA G+ AH A+ D T Sbjct: 205 -----LPQALCTAATARELI----PREAVGRYTLANLAAHCGLASSPAHRAQQDAATTFD 255 Query: 187 LVWLIREKKPK 197 L + + Sbjct: 256 LTHRLYTIAQE 266 >gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans CH34] Length = 530 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 55/194 (28%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D DR + V V I+ + P +TGIT Sbjct: 35 IVFVDLETTGADAQRDRITEIGVVEVGPDG--IQEWDTL---VDPLTSIPPFVQGLTGIT 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + + + + +N RFD + +N F R Sbjct: 90 DEMVRGQP-TFALIAEALAEKLQ---GRLFVAHNARFDYGFLKNEFRRAGV--------- 136 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R D+L +R + P + L L G+ H A AD Sbjct: 137 -TFRADVLCTLRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRALADAELL 185 Query: 185 LALVWLIREKKPKL 198 I E Sbjct: 186 WQFWQKIHEIYSVD 199 >gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] Length = 1454 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 66/198 (33%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D IE + D + Sbjct: 2 YLIFDTETTGLPKRWDAPITDVDNWPRCIQIAWQLHDEMGNLIEHQDYLIS--PDGFDIP 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ A GV E + ++ S T + NI FD F+R Sbjct: 60 YDAERIHGISTDLAREQGVPLLEILDKFNEALSK--TKFVVGQNIGFDINIMGAEFHRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + S L V+ + + +Q P G FKL L + Sbjct: 118 VE----------SALSKLPVLDTCTEITANLLQLPGGRGGR--FKLPTLTELHEYLFNVP 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FAEAHNATADVEATTRCF 183 >gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1] gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens MI-1] Length = 930 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 31/202 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +FV D ET G D D + V++ ++I+S + + +T Sbjct: 1 MLNFVALDLETSGLDCLQDEIIEIGLVKM-VDGKEIDSFSTL---IRPKGILPVKIKRLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + E I QF + + +N++FD + Sbjct: 57 GIKDHELQDAPK-LQEVLPVILQFIAD---LPLVGHNVKFDYDFLSTAVQSPL------- 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 GA++ +L L GI+ N H A D Sbjct: 106 ----------------ANPLYDTLELSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDA 149 Query: 182 YATLALVWLIREKKPKLFEYLY 203 L+ + + ++ L Sbjct: 150 RGAAMLLIHLLNQCEEMEPELI 171 >gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.] Length = 182 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 32/197 (16%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +VI+D ET G + R + V + I + +A + Sbjct: 14 SDKYVIFDVETTGFNPQHGARIIEIGVVHI-ENGNIISEFKSL---INCGKAVSKQAQKV 69 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + E E +F S + +N FD + R R + Sbjct: 70 NGITNEMLSGEPTPE-EVFPDFLKFISKS---TLVAHNAVFDISFLRYELSRLGF----- 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA---NGIEHVNAHDA 177 D L + PD KL +A N ++++ H A Sbjct: 121 -----VLSNDYLCTLNISRKIFPDLEN----------HKLLTVAKHILVNLPKNLHLHRA 165 Query: 178 KADVYATLALVWLIREK 194 D T + + ++ Sbjct: 166 LDDARLTAMIWMEMMQR 182 >gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 235 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 28/207 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M N +V D ET G D D+ + VR+ E E F + + + + Sbjct: 1 MVNSYVAVDLETTGLDPKRDKIIEIGAVRI-EAGEITAEFESF---VNPYRMLEAKTRTL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI Q + +E E F + + I FD + + Sbjct: 57 TGIRDQDVVHAPGIE-EVLPVFLNF---AGELPLLGHRIIFDYSFLKRAAVNQGE----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D L + R L+ GI+ H A AD Sbjct: 108 --SFSRAGIDTLTLARLF-------------MPAEERKNLKAACGWFGIDQRETHRAMAD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 A L ++++ K + +N Sbjct: 153 AVAAHQLYQAMKKRYGKERPDAFSEKN 179 >gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] Length = 318 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ ++ +P + GI Sbjct: 32 NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +++G+ + R +F + IIGYN NF + Sbjct: 90 TEAQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + +L D GI V AH D Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + + + KN Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213 >gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 469 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 29/275 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G A + A D + I+S + +TGIT Sbjct: 13 YAIVDIETTGGYAANSGITEIAIYLHDGH-QIIDSYQTL---INPHKEIPYHIQMLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + + I+ F + +N+ FD + Y Sbjct: 69 PEMLTDAP-SFEDVAADIYSFLENK---VFVAHNVNFDYSFVYAHLKACGYQWKS----- 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G +S+ L +L I + H A D AT Sbjct: 120 -----PKLCTVRLARNIF----------KGFSSYSLGNLCQRLDIPISDRHRAAGDAKAT 164 Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L ++ L + K QL + + + ++N I V Sbjct: 165 VILFERILSHDTNGLIDSFLQTHAKEQLLPTHIDKVVFERLPAKPGIYIFKNNKGKIIYV 224 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278 + V+ + + L ++ F Sbjct: 225 GKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDF 259 >gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 208 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 53/199 (26%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G DR + V + + + T Sbjct: 7 NTLVVLDFETTGLSPNQGDRAIEIGAVLI-EDGVITQRFSELM---NPGFRISRFIEDYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q E R F + N + +N FD + F + + Sbjct: 63 GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 R + F + A + +L L + H A AD Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKKLPTDGTFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLF 199 T L + + F Sbjct: 159 AEMTGYLWLAMLADLQQEF 177 >gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 1438 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 55/474 (11%), Positives = 123/474 (25%), Gaps = 45/474 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + + +T IT Sbjct: 421 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 476 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++ F + +N++FD + R Sbjct: 477 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ L LA + + H A D AT Sbjct: 527 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 573 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P Sbjct: 574 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 633 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ + L + ++ ++ + Sbjct: 634 ASTKDFYRIPRTPKSDLARLHEGLFYGSGCWQGDVFIAMMQKGYDEAREKAKFYDFLEVQ 693 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + + + + + ++ + D + + Sbjct: 694 PPANYSQLIEDGLIKDEAQLEDIIRNIYKLGKELNKPVVATGDAHYVEPHDAIYRTILIS 753 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 754 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIDNTNKI--ADEISE 805 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469 K L I +++ L + E G + + + + L +I Sbjct: 806 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 858 >gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000] gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia solanacearum GMI1000] Length = 242 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 56/202 (27%), Gaps = 27/202 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ + D A+ + GIT Sbjct: 4 IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--LNPEREIDAGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R + Sbjct: 61 NEFVADKPK-FAEVVDEIRDYVQGAEAII---HNAAFDLGFLDMEFKRLGLPPF------ 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 R A D + R L L G+ H H A D Sbjct: 111 -----------REHLAGHIDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 + + + L + + Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLE 181 >gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 212 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R + ++ + + V + Sbjct: 8 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGQVVDRFQSLM---NAGRRIPSDVVAL 63 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F + +N FD + ++ Sbjct: 64 TGITNDMIATAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGMLG------ 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 M A +AF+ + A S +L LA + AH A Sbjct: 114 --------------MSADHAFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMV 159 Query: 180 DVYATLALVWLIREKKPKLF 199 D L +++ + + Sbjct: 160 DAEMAGHLWCRLQQDISRTY 179 >gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 212 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R + ++ + + V + Sbjct: 8 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGQVVDRFQSLM---NAGRRIPSDVVAL 63 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F + +N FD + ++ Sbjct: 64 TGITNDMIATAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGMLG------ 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 M A +AF+ + A S +L LA + AH A Sbjct: 114 --------------MSADHAFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMV 159 Query: 180 DVYATLALVWLIREKKPKLF 199 D L +++ + + Sbjct: 160 DAEMAGHLWCRLQQDISRTY 179 >gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 316 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 67/211 (31%), Gaps = 24/211 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET G DR + AG++V R + ++ P ++ +P + G Sbjct: 33 DDYTMLDIETTGLSPYRDRVTELAGIKV-RNGKVVDKYSQLVKHPKNNKVPQ-FITKLNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + L G+ E F I+GYN NF + Sbjct: 91 IDEKLILTQGIPVKEAITDFRNFIGED--VIVGYNVNFDL----------NFIYDLCEKF 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +DV+ F + +L D GI AH D Sbjct: 139 NLERLSNNYIDVLHFSRVFF----------KKESHNRLLDCIQRLGISESEAHRGLKDSL 188 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 T A+ + +++ KN + Sbjct: 189 DTKAVFDIYQKQFTSEMLSEVKNNLKNCILT 219 >gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 935 Score = 93.7 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 59/192 (30%), Gaps = 33/192 (17%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M FV D ET G +D +FA V+ R E +E A + Sbjct: 1 MKERIFVALDVETTGLQAGIDEIIEFAAVKF-RDGEILERFSQL---IAPRQPLPLKITR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT Q + +I F + ++I FD R Y Sbjct: 57 LTGITAQDLADAPH-FNDVGGKIAGFIKS---YPLVGHSINFDLGMLRAQGMNFTQPVYD 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +DL ++ A +KL +A GI H + H A Sbjct: 113 T--------FDLATILMPQIAV----------------YKLGAIADRLGIPHPDDHRALN 148 Query: 180 DVYATLALVWLI 191 D T + + Sbjct: 149 DAEVTAHVFTHL 160 >gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 359 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 79/249 (31%), Gaps = 28/249 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D Q E ++ + V +TGI Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKYDGQ-EIVDQFISL---INPEKPIQEFVVRLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + CII +N FD R F R +D R + Sbjct: 58 NKMLKNAPK-FYEVAKRIVEITKN---CIIVAHNSAFDYRILRTEFDRLGFDFERNT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + A D S+ L L + GI + H A D AT Sbjct: 111 -------LCTVELSQALILD----------QPSYSLGKLTKSLGIPISDRHRATGDALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + L L+ EK K + ++ + ++N+ + + + Sbjct: 154 VKLFKLLLEKDHKKTIIQNAIKYFDKRLEKQKLKNLIEEIPAVLGVYYIHDANGKVIYIG 213 Query: 245 WHPRYKDSV 253 K + Sbjct: 214 KGKNIKAEI 222 >gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] Length = 234 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 64/212 (30%), Gaps = 32/212 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V +D ET G V D+ + V+V + + C + + +T Sbjct: 1 MREYVAFDLETTGLSVEEDQVIEIGAVKV-KNGKIAGKYN---CIIYPEREVSDFIIRLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + G+ E + F + + +N+ FD + + R Y Sbjct: 57 GITRKML-DGGIPMRE---GVEGFLAFSEGYPVLGHNLMFDYRFMKTAAKRFRY------ 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D +RA S KL L + AH A D Sbjct: 107 ----AFEKEGVDTLRAARLLLRGLE----------SKKLSSLCEHYHYVNQAAHRAYDDA 152 Query: 182 YATLALV----WLIREKKPKLFEYLYDYRNKN 209 AT + E + YR K Sbjct: 153 LATAVVFESMKREFGEDQKVFVPEPLQYRPKK 184 >gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 204 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 30/192 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A V V + + P + Sbjct: 1 METVAVIDFETTGMSPELGDRATEVAVVIV-SDGKISSRYQSLM---NTGAYIPPFIEDL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + A+ + + F +N FD + + R + Sbjct: 57 TGISNEMIRQAP-PAAQVMKELADFV---GAAPWVAHNASFDSRFLDAEWSRMGH----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 R AF+ + + + KL L G + H A A Sbjct: 108 ---------------RREQAFACSMLLARRLYPDSPNHKLGTLVRFLGLPDTARHHRALA 152 Query: 180 DVYATLALVWLI 191 D T L + Sbjct: 153 DAEMTAHLWLRM 164 >gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides ATCC 15264] gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + + + F + L +A+ + GIT Sbjct: 5 IVLDTETTGFDPRTGDRLIEVGCIEI-LDLLPTGR--TFHRFVNPERLIPADAIRVHGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 K F++ + + +N +FD + + R + + Sbjct: 62 DDKVKDAPK----FAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHET--- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + + + + L L I V+ H A D Sbjct: 115 --RWIDTLQLAQKRFPGMAN--------------SLDALCKRYKISLVDRTLHGALIDAR 158 Query: 183 ATLALV 188 + Sbjct: 159 LLAEVY 164 >gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] Length = 1254 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 60/208 (28%), Gaps = 26/208 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G A DR +FA R + +TGI Sbjct: 176 TIIVFDLETTGFRAAGDRIIEFAA----RDLAGGDR-STISALVNPGRTVPYLITAVTGI 230 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T Q + V E I QF ++ +N RFD + F Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 W D + + R + S KL L A G AH Sbjct: 291 PEW-----WLFLDSMPLARETKKKFGYNWR---------SLKLSVLHEAYGLHSTERAHR 336 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A ADV +++ I + + Sbjct: 337 AMADVNMLASVLEAIVSELQLPASEFLE 364 >gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 1474 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D + F P +P Sbjct: 2 YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMV-EHADFLIAPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I GI+ + A G+ E R ++ + + NI FD FYR Sbjct: 61 -DSEKIHGISTELAQERGIPIQEALVRFNEALAKAK--FVVGQNIGFDLNIMGCEFYRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL----ALANGIE 170 + S + V+ + + ++ P G +KL +L G+ Sbjct: 118 VE----------SPMAGMPVLDTCTEVTAELLKLPGGRGGR--YKLPNLTELHTYLFGVP 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FAEAHNATADVEATTRCF 183 >gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 205 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 39/225 (17%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R E ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + ++ + F + +N FD + + Sbjct: 57 TGITNEMIASAP-PVSQVMKEAAAFV---GNHPLVAHNAGFDKRFWQAELGMLG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 M A +AF+ + A S +L LA + AH A Sbjct: 107 --------------MAAEHAFACTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215 D L ++ + +K ++ Sbjct: 153 DAEIASHLWCRLQRDIGATYGLRHIDHGLMSRLQTTSKAKVATFF 197 >gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 233 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 14/200 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + D V +D +++ +P DD +PEA+ + G+ Sbjct: 38 YSVIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLL 97 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ + + + + + ++ + D + R R + Sbjct: 98 PQDVEQAPPP-GDVLPVLLRRLT---GRVLVVHVADIDIGFLRQALRRLYQVD------- 146 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +D R + F + + D + +L+ LA + G+ H+A D T Sbjct: 147 --PRGPAIDTARLAWHFQRN-QRLIDGADQEPALQLRALAESAGLPVYAEHNALNDALTT 203 Query: 185 LALVWLIREKKPKLFEYLYD 204 + Sbjct: 204 AQVFLAQINAMQPNGTPRLR 223 >gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5] Length = 255 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 27/197 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +D ET G D A DR + + ++ E+I V K + EA I Sbjct: 5 LKRPIIFFDLETTGVDTAKDRIVEISMAKIMPDGEEI----VKTRKLNPEMHIPEEATAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + A+ ++ + QF G+N+ RFD F R D Sbjct: 61 HGITDEDVKDCP-TFAQVAKSLEQFIR--GCDFGGFNSNRFDLPVLVEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D R + + + ++K + +AH A+AD Sbjct: 114 -----------VDFKRRKFIDVQNIFHKKEQRTLVAAYKF-----YCDKDLDDAHSAEAD 157 Query: 181 VYATLALVWLIREKKPK 197 AT ++ E+ P Sbjct: 158 TLATYEVLKAQLERYPD 174 >gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 318 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ + D ET G DR + GV+V R + ++ ++ +P + GI Sbjct: 32 NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +++G+ + R +F + IIGYN NF + Sbjct: 90 TEAQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DV+R + +L D GI V AH D Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T+ + ++ + KN Sbjct: 188 TIKVYDDFAQRFTDDLLEKAQSKIKN 213 >gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] Length = 228 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 29/225 (12%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + +D ET G D + DR + A + + E+ V + EA Sbjct: 1 MKRSIL-FDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVL---IHPERDIPAEATK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G + + +E + +F + +N RFD + + Sbjct: 57 VHGFRIEDLEGKP-IFSEVADGFLEFI---GDSPMIAHNARFDFKFVNAELKACGREPLD 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 ++ D +++ R Y P L L GI+ H+A Sbjct: 113 YASR----AIDTVEMARKKYPGLPA--------------SLDALCRRFGIDLSQRGTHNA 154 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + + + + R+++ + + N P Sbjct: 155 LLDCKLLAEVYVELMGGRQRGLGLAGPSRSRSMTEGINALANRKP 199 >gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 290 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D ET G + D+ V+ D F+ D + V +T Sbjct: 123 QKRFVAVDIETTGLNTESDQILSIGAVKHDG--------IEFYRLIKQDIDVPKQIVELT 174 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + ++GV + + F I N RFD + + + + Sbjct: 175 GITSEMLSKEGVPLQDALEELTDFV---GNVPIVGYNFRFDSVFLNRDYRKCGMQELKNE 231 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 DLL V++ F + +KLQ + GIE+ H+A +D Sbjct: 232 IK------DLLPVVKRREKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDA 272 Query: 182 YATLALV 188 AT L Sbjct: 273 RATKELA 279 >gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua] gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua] gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua] gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 29/259 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + F I+ +N FD + + + + N+ Sbjct: 57 KGSDP-----IDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVGLE------KANNA 105 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L++ R +Y + +L L I H A D AT L Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 W + + ++ + + + + + + P + Sbjct: 153 AWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI 212 Query: 248 RYKDSVIGCNLSGDMRVFQ 266 Y V S ++ + Sbjct: 213 NYFYRVPRIPRSQLKKMRE 231 >gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299] gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299] Length = 1473 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 28/199 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G + +R + A V V P +P P V +TGIT Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD---PTHQPMSTLVNPGRFAVPPP-VVALTGITN 351 Query: 66 QKALRDGVVEAE-FSRRIHQFFSV-------PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V + + ++ + + +N +FD + + + R + Sbjct: 352 AMVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGREL 411 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH 175 D L + R S+KL+ LA G++ AH Sbjct: 412 PE-----DWRFVDTLPLARKT---------LAKEAVPGGSYKLESLAAHFGVDTAGASAH 457 Query: 176 DAKADVYATLALVWLIREK 194 A+AD ++ + Sbjct: 458 RAEADARMLGDVLQRLVGC 476 >gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 530 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 54/188 (28%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D DR + V V + I+ + P +TGIT Sbjct: 32 IVFVDLETTGADAQHDRITEIGVVEVGPEG--IQEWDTL---LDPGVSIPPFIQRLTGIT 86 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + + + + +N RFD + +N F R Sbjct: 87 DETVQGQP-TFASIAEALAERLQ---GRLFVAHNARFDYGFLKNEFRRAGL--------- 133 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R D+L +R + A L + ++ H A AD Sbjct: 134 -TFRADVLCTVRLSRSLF----------PSAARHGLDAIIARFDLQPRARHRALADAELL 182 Query: 185 LALVWLIR 192 I Sbjct: 183 WQFWQKIH 190 >gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] Length = 238 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 14/200 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D E G + D V++ + F ++ I IT Sbjct: 40 FVVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGE--TFHVYIKPSRALPKDSTLIHRIT 97 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ+ + + + + F S ++ + + D + R++ + Sbjct: 98 PQQIEQAP----QLATVLPDFISFCGQALLVGHYVGLDVAFLNRACRRHYGAVVSNPCLD 153 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 M+ R ++ L L+ + HDA D T Sbjct: 154 TMRLAQTYTEMQWQQYH--------DRFRMDATYSLAGLSQEYNLPDFTLHDAYEDALQT 205 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + +K Sbjct: 206 AYLFVFLIKKMRAKGIVTLK 225 >gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 75/252 (29%), Gaps = 27/252 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ + +F I+ +N FD + + + + N+ Sbjct: 57 KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KADNAV 106 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L++ R +Y + +L L I H A D AT L Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248 W + + ++ + + + + + + P + Sbjct: 154 WKLIKDAKEMHDINFHDSLNDYMGEGEAYKRARPFHATIYAQTDVGLKNLFKLITMSNIN 213 Query: 249 YKDSVIGCNLSG 260 Y V S Sbjct: 214 YFYRVPRIPRSQ 225 >gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 249 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 64/200 (32%), Gaps = 15/200 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D E G +V D +R+ +E + F P D +++ I GIT Sbjct: 52 FVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDV--PKQSIVIHGIT 109 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P +A + E + + F II +NI D + F Sbjct: 110 PSEAQKAP-PLKEALQGLLDF---CGNSIIVGHNINLDISVINRELKKEF---------G 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G +D MR + S+ L+ L+ G+ H+A D T Sbjct: 157 GELHNPCIDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQT 216 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + K + Sbjct: 217 AYLFIYLVHKMQVNAAWTLK 236 >gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 469 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 79/275 (28%), Gaps = 29/275 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G A + A D + I+S + +TGIT Sbjct: 13 YAIVDIETTGGYAANSGITEIAIYLHDGH-QVIDSYQTL---INPHKEIPYHIQMLTGIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + + I+ F + +N+ FD + Y Sbjct: 69 PEMLTDAP-SFEDVAADIYSFLENK---VFVAHNVNFDYSFIYAHLKACGYQWKS----- 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G +S+ L +L I + H A D AT Sbjct: 120 -----PKLCTVRLARNIF----------KGFSSYSLGNLCQRLDIPISDRHRAAGDAKAT 164 Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + L ++ + L + K QL + + + ++N I V Sbjct: 165 VILFERILSQDTDGLIDSFLQTHAKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278 + V+ + + L ++ F Sbjct: 225 GKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDF 259 >gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N] gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N] Length = 193 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 58/176 (32%), Gaps = 27/176 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G +FA VRVD + + + +P +TGI+ Sbjct: 28 FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQL-VRIN-GRVPS-FIARLTGIS 84 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q+ +RDG E R F T + ++N FD + R R Sbjct: 85 QQEVIRDGKPIDEAFRAFCDFV---GTAPVFFHNASFDTRFLRATASRCG-------QAF 134 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N L + R + S KL LA G H A AD Sbjct: 135 DNDTHCTLLLARRAW-------------PELRSHKLGMLAEHLGAAT-PTHRALAD 176 >gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA] gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA] Length = 234 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 64/212 (30%), Gaps = 32/212 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V +D ET G V D+ + V+V + + C + + +T Sbjct: 1 MREYVAFDLETTGLSVEEDQVIEIGAVKV-KNGKIAGKYN---CIIYPEREVSDFIIRLT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + G+ E + F + + +N+ FD + + R Y Sbjct: 57 GITRKML-DGGIPMRE---GVEGFLAFSEGYPVLGHNLMFDYRFMKTAAKRFRY------ 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D +RA S KL L + AH A D Sbjct: 107 ----AFEKEGVDTLRAARLLLRGLE----------SKKLSSLCEHYHYVNQAAHRAYDDA 152 Query: 182 YATLALV----WLIREKKPKLFEYLYDYRNKN 209 AT + E + YR K Sbjct: 153 LATAVVFESMKREFGEDQKVFVPEPLQYRPKK 184 >gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] Length = 251 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 26/189 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + D ET G D D Q + + D + I E C P P+ A I G Sbjct: 21 EKILCIDTETTGLDPRKDEIIQLSMI--DGHGKSI--FESLICPPTRKRWPN--AQEING 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP+ +E E + ++ + + + I+GYN F + + Y Sbjct: 75 ITPKMVKGKPELE-EVADQVQEAINAAD-LIVGYNLPFDISMMEAEGFDFSDKEQY---- 128 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+M +W S D KL A GI+ AHDA D Sbjct: 129 ----------DLMEDYAQVFG---RWSSAKDDYLWTKLTTAAKHYGIKFA-AHDAGEDAR 174 Query: 183 ATLALVWLI 191 AT+ L + + Sbjct: 175 ATIKLFYAM 183 >gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 235 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 25/205 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V + + F L + EA+ + GIT Sbjct: 4 IVLDTETTGIDPRQGHRIIEIGCV---ELLNRRLTGNTFHVYVNPQRLIEQEAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L + A+ + +F S + +N FD + + F R + Sbjct: 61 NEYLLDKPL-FADVAADFVKFIS---GAQLVIHNAPFDVGFMDHEFARVAA-MAGKKTSD 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L++ R I+ + L L GI+ H H A D Sbjct: 116 MCTVLDTLEMARQIHPGQKN--------------NLDALCKRYGIDNSHRELHGALLDSE 161 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 + ++ + L + Sbjct: 162 ILADVYLMMTGGQTDLNLSGKSNSD 186 >gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 53/191 (27%), Gaps = 29/191 (15%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D Q A VR+ VF + + G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGE--VFDTLVNPGRPIPAASTAVHG 566 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + AE RR H+F ++ +N FD + R Sbjct: 567 ITEAMVATAPAI-AEVGRRFHKF---AEGAVLVAHNAPFDLEFLRRKELLIG-------- 614 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180 N +LD + A L L G I H A D Sbjct: 615 --KNFDNPVLDTVLLSAVVF----------GAAEGHSLDALTHRLGITIPEEARHTALGD 662 Query: 181 VYATLALVWLI 191 AT + Sbjct: 663 TVATAEAFLRL 673 >gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003] gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 53/191 (27%), Gaps = 29/191 (15%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D Q A VR+ VF + + G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGE--VFDTLVNPGRPIPAASTAVHG 566 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + AE RR H+F ++ +N FD + R Sbjct: 567 ITEAMVATAPAI-AEVGRRFHKF---AEGAVLVAHNAPFDLEFLRRKELLIG-------- 614 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180 N +LD + A L L G I H A D Sbjct: 615 --KNFDNPVLDTVLLSAVVF----------GAAEGHSLDALTHRLGITIPEEARHTALGD 662 Query: 181 VYATLALVWLI 191 AT + Sbjct: 663 TVATAEAFLRL 673 >gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136] gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136] Length = 258 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 30/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + + I Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ESKTMRVNPEMHIPEASTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E ++ I + I G+N+ RFD F R D Sbjct: 61 HGIHDEDVADCP-TFKEIAKDIARDLE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + + + + ++K G +AH A+AD Sbjct: 114 -----------IDLTKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNTA 238 AT ++ + P + E + ++ + + +F + Sbjct: 158 TRATYEVLKAQLDHYPDVLENDIKFLSEYSTYSKNVDFAGRIVFDDNGVEVFNFGKYKGI 217 Query: 239 LIAPVAW-HPRYKDSVI 254 +A V P Y ++ Sbjct: 218 SVAEVLQRDPGYYGWIL 234 >gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] Length = 1450 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+YD ET G + + + V++ + ++ V +T I Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAVKIVEK-RIVDRFSQL---VNPGQSIPQNIVDVTNI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E E + F I+ +N FD Y + + Y + Sbjct: 479 TDSMVQNEPNIE-EVLPKFLDFIE---GSILVAHNADFDIGYLKQQCKQQGYSDF----- 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 S D L + + +Y F L L G+ N H A D A Sbjct: 530 -NPSFIDTLQMAKDLY-------------PELKQFGLGPLNKKLGLSLENHHRAVDDCQA 575 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T + + +K + Sbjct: 576 TGNMFLIFLDKYLDQGIHKLS 596 >gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] Length = 1128 Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCI-EHQDYLVKPEGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A GV +E + + S T + N++FD F R Sbjct: 61 -DAEKIHGISTELAQEQGVSLSEVLEKFNTALSK--TKFVVGQNVKFDLNIMGAEFVR-- 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 ++ + L V+ + Q P FKL L Sbjct: 116 --------EDVANPLQELPVLDTCTEHTASLCQIP--GGRYGKFKLPTLTELHQFLFNTP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196 AH+A ADV AT + + K+ Sbjct: 166 FGEAHNATADVEATTRCFFELIRKQQ 191 >gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] Length = 1208 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 60/208 (28%), Gaps = 26/208 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G A DR +FA R + +TGI Sbjct: 176 TIIVFDLETTGFRAAGDRIIEFAA----RDLAGGDR-STISALVNPGRTVPYLITAVTGI 230 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T Q + V E I QF ++ +N RFD + F Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 W D + + R + S KL L A G AH Sbjct: 291 PEW-----WLFLDSMPLAREAKKKFGYNWR---------SLKLSVLHEAYGLHSTERAHR 336 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A ADV +++ I + + Sbjct: 337 AMADVNMLASVLEAIVSELQLPASVFLE 364 >gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] Length = 960 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 61/185 (32%), Gaps = 28/185 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G V DR Q V V + E I E K +TGI Sbjct: 25 YSVVDLETTGTSVNHGDRIIQVGCVLV-QDGEIINHFET---KINPRVAVPRHITQLTGI 80 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + + ++ S I +N+ FD + R Y Sbjct: 81 KNNDVRNAPLFE-DIAGTLYSLLS---GTIFVAHNVNFDFPFLNAELERAGYP------S 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + + S++L+DL + IEH + H A +D A Sbjct: 131 LSIKAIDTVTLSQI-------------LMPTVKSYRLRDLTSSLSIEHDHPHSAVSDAEA 177 Query: 184 TLALV 188 T L+ Sbjct: 178 TAHLL 182 >gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus thermophilus HB8] gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB8] Length = 624 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 52/184 (28%), Gaps = 31/184 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D ET G D D AGV V ++ EVF P A + G+T Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVL--GRRVLRQEVFEALVNPGRPISPAATAVHGLT 497 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +EA F ++ +N FD + R R D Sbjct: 498 AEMLRDKPPLEA-VLPAFRAFVQD---TVLVAHNGAFDLAFLR----RAGLDQP------ 543 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + ++L+ LA G+ H A D T Sbjct: 544 ---------------PLLDTLLLAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMT 588 Query: 185 LALV 188 + Sbjct: 589 AEVF 592 >gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 1450 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+YD ET G + + + V++ + ++ V +T I Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAVKIVEK-RIVDRFSQL---VNPGQSIPQNIVDVTNI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E E + F I+ +N FD Y + + Y + Sbjct: 479 TDSMVQNEPNIE-EVLPKFLDFIE---GSILVAHNADFDIGYLKQQCKQQGYSDF----- 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 S D L + + +Y F L L G+ N H A D A Sbjct: 530 -NPSFIDTLQMAKDLY-------------PELKQFGLGPLNKKLGLSLENHHRAVDDCQA 575 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T + + +K + Sbjct: 576 TGNMFLIFLDKYLDQGIHKLS 596 >gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] Length = 204 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 58/194 (29%), Gaps = 30/194 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D+ET G + DR + V++ E +++ + + TGIT Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSAFIEGYTGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q E F N + +N FD + + R Sbjct: 64 NQMLSGAP-SCDEVMTEFADFIRGEN---LVAHNASFDKRFLDDELERV----------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 + F+ + A S KL D+ IE+ H A AD Sbjct: 109 ---------KVAYRGEFACSLLISRRLHQDAPSHKLGDIVRYKHIENDGVFHRALADAQV 159 Query: 184 TLALVWLIREKKPK 197 T L ++ + Sbjct: 160 TAKLWMVMVNDLQQ 173 >gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] Length = 876 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 85/209 (40%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A ++++++ E ++ E F ++ ++ Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKSVK----DSYYVH 562 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + ++ ++ I+G+N + + N + Sbjct: 563 GFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKT 620 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 621 F------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I EK + +K+ Sbjct: 662 IATGELLVRAINEKIRETSMERMALMSKH 690 >gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD] Length = 1457 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 135/476 (28%), Gaps = 44/476 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + +F V V + + +E E +TGIT Sbjct: 404 YVVFDLETTGLSPKFNELIEFGAV-VWQNGQTLEKHEFL---IKPKEKIPSYISDLTGIT 459 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + + E + +I Q F I+ +N RFD F Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNS---ILVAHNARFDYGCLVEFFKELELYELE----- 511 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R + + K + + +H D Sbjct: 512 -QPVIDTLEVSRFLAP-----------TQKRHNLKELAKNASIHYDETESHRGGYDAEVL 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + K + + N+ + + + + V + Sbjct: 560 AKVWDQFLIKLIEKNIKDLNSLNQVGSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVS 619 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL-----FTSHDELKGLVPVPIKEVHL 297 ++ + + + L +L + H++L+ + Sbjct: 620 LSNTDNFLSKPLLFYDKILPSNNLLWGTSGLDSQLMEILFYNHHNDLETFIKKFDFIEIP 679 Query: 298 NKCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT----NLRDRFKAIYNKPYT 350 + K++ + + + ++ L+ + ++ Y Sbjct: 680 TPSSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIVASSEPRYINKEDKIFHLVYIYA 739 Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410 L+ G + I ++L D+ L + RN P+ Sbjct: 740 KGVGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEFAFLEDQDLID---EIVVRN-PN 795 Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + + + ++ K L + ++ +K++ L + ++ E L + + ++ Sbjct: 796 KI--ADLVEQVQVIKDKLYPPKFDDSASKIKHLVYQKAHEKYGENLPDQIALRIEK 849 >gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 232 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 53/187 (28%), Gaps = 28/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + YD ET G + DR + A ES + + ++ I Sbjct: 1 MSVLIFYDTETTGTQIDKDRVIEIAAY----NSSTKESFVTY---VNPEIPVPEDSSKIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E QF + ++ +NN FD + R + Sbjct: 54 GITTAMVSSAP-TFPEAYHNFKQFCGSAS-ILVAHNNDNFDLPLLQKECQRYSLEPLN-- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D ++ + PD LQ L G AH A DV Sbjct: 110 -------LRTIDSLKWAKKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152 Query: 182 YATLALV 188 + Sbjct: 153 ITLHKVF 159 >gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua] gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua] gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua] gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua] gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua] gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 29/259 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + F I+ +N FD + + + + N+ Sbjct: 57 KGSDP-----IDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVGLE------KAKNA 105 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L++ R +Y + +L L I H A D AT L Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 W + + ++ + + + + + + P + Sbjct: 153 AWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI 212 Query: 248 RYKDSVIGCNLSGDMRVFQ 266 Y V S ++ + Sbjct: 213 NYFYRVPRIPRSQLKKMRE 231 >gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM 6578] Length = 198 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 52/183 (28%), Gaps = 27/183 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G D + A V+ Q + + KP E I GI Sbjct: 22 VAFDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPH--PIPAEVTKIHGIGD 77 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + F T ++ +N FD + R + R G Sbjct: 78 QDVEEAP-PLPSVLPMLESFV---GTHLLVAHNAPFDLSFLRIEYARCGRPYP------G 127 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D + R++ + L L A I H A +D +A Sbjct: 128 FRAIDTRLLARSV-------------LPHLGRYSLASLTRALDIPLQQHHRALSDAWACG 174 Query: 186 ALV 188 L Sbjct: 175 DLF 177 >gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 290 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 30/184 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G + D+ V+ D F+ D + V +TGIT Sbjct: 126 FVAVDIETTGLNTETDQILSIGAVKHDG--------TEFYRLIKQDIDVPKQIVELTGIT 177 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++GV + + F N I+GYN + + + N + Sbjct: 178 SEMLSKEGVPLQDALEELTDFV--GNVPIVGYN-------FRFDSAFLNRDYRKCGMQEL 228 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N DLL V++ F + +KLQ + GIE+ H+A +D AT Sbjct: 229 KNEIKDLLPVVKRKEKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDARAT 275 Query: 185 LALV 188 L Sbjct: 276 KELA 279 >gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 375 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 49/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V V + P +TGI+ Sbjct: 15 LVFVDLETTGGSSAEHRITEIGVVEVGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + + F + + +N FD + R F R Y Sbjct: 70 DAMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGYAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPSARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRQLHE 174 >gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 55/202 (27%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G +L DR + VR+ E + T Sbjct: 5 DTVVVLDFETTGLSPSLGDRAIEIGAVRI-EGGEVTGRFQELM---NPGCRISGFIEDYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E R +F N + +N FD + R Sbjct: 61 GITNGMLRDAEPCEV-VMERFAEFIGGHN---LVAHNASFDQRFLDAELARI-------- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 + D + M A D A + +L L AN H A D Sbjct: 109 --SQRRVGDFVCSMLAARRLFQD----------APNHQLGTLVRYANFSVDGVFHRALYD 156 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L + + + Sbjct: 157 SEMTTKLWIRMLDTIGDRYGLF 178 >gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] Length = 758 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 100/329 (30%), Gaps = 27/329 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R+ +F+ + +N++FD + R D Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQ 333 P + ++ D K E +T + + Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYK 704 >gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 375 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + + F + + +N FD + R F R Sbjct: 70 DEMVRDAP-SFASLAPTL---FERLDGKLFVAHNASFDRGFLRAEFDRAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRQLHE 174 >gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] Length = 836 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 53/444 (11%), Positives = 118/444 (26%), Gaps = 41/444 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E +E + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EA ++ F + +N++FD + R Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ + L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + K + + P + Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + + S R+ L + ++ ++ + Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361 P + + D + E + + + ++ + + +D + + Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419 + + + +++ F D + N E + Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803 Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL 443 K L IE +++ L Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKL 826 >gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 1474 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D + F P +P Sbjct: 2 YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMV-EHADFLIAPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I GI+ + A G+ E R ++ + + NI FD FYR Sbjct: 61 -DSEKIHGISTELAQERGIPIQEALVRFNEALAKAK--FVVGQNIGFDLNIMGCEFYRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL----ALANGIE 170 + S + V+ + + ++ P G FKL +L G+ Sbjct: 118 VE----------SPMAEMPVLDTCTEVTAELLKLPGGRGGR--FKLPNLTELHTYLFGVP 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FAEAHNATADVEATTRCF 183 >gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] Length = 470 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 28/186 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D Q VRV + + + I Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLV--DPGIPIPAASTRVHKIN 335 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L + ++ F +I +N FD + R + Sbjct: 336 DAMVLGAP----DIAKAGLIFHQFSRDAVIVAHNAPFDMAFLHRHAKRMGVEW------- 384 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 +LD + + + L + G I H A D Sbjct: 385 ---THPVLDTVLLSAVLF----------GASETHTLDAVCARLGVTIPATLRHTALGDAV 431 Query: 183 ATLALV 188 AT ++ Sbjct: 432 ATAEVL 437 >gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 375 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSTAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + + F + + +N FD + R F R Sbjct: 70 DDMVRDAP-SFASLAPTL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRQLHE 174 >gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101] gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101] Length = 870 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 105/300 (35%), Gaps = 30/300 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D E+ G DV D Q A +++++ E ++ E F ++ ++ Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKSVK----DSYYVH 556 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + R G + + + +F II +N+++D + RN ++ Sbjct: 557 GFSDEMLQRIGEEKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y G ++KL++L+ +H +HDA D+ Sbjct: 614 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT L+ +K K L+ I + L+A Sbjct: 656 IATGELLVRAINEKIKETSMERMALMSKHLKAFTAISKKLNELFQIAERKRP---YELVA 712 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301 V K G + +DL L + L + + I+ L+ Sbjct: 713 CVINGFNIKSMYAGDENKEKLNRLRDL--YALFRDLDDKSKGNRDALLDIIRITGLSNGE 770 >gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus polymyxa SC2] gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus polymyxa SC2] Length = 960 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 27/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET G A D Q +D I V+ P +TGI Sbjct: 2 KFAVLDFETTGTQSA-DDIIQVGLAIIDHD-NSISR--VYGSYVNPGRSIPPFITGLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E + ++ +N+ FD + ++ R Y + Sbjct: 58 TDDDVKDAPALE-EMMMELVPMLDD---VVLVGHNVAFDFNFLQSALDRCGYLPF----- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +D ++ ++ +S++L ++ G+ H H A +D A Sbjct: 109 -SGRILDTMDFLKIMF-------------PSLSSYQLGFVSSEFGLAHDRPHQADSDALA 154 Query: 184 TLALVWLI 191 T + Sbjct: 155 TAEVFLKC 162 >gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] Length = 287 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 24/200 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +I+D ET G D+A DR Q + ++VD Q + E +F + P + Sbjct: 5 LTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNE-ERKSLF---VNPEKPIPPFVQEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + ++ + + F+ G+N+ RFD F R D Sbjct: 61 THITDDMVKDAP-TFKQIAKSLQETFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDF- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + + AH A D Sbjct: 117 ----------------QRCRLIDAQNIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADED 160 Query: 181 VYATLALVWLIREKKPKLFE 200 AT ++ +K Sbjct: 161 TEATYRVLQGQLDKYNPENP 180 >gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 249 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 27/233 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D ET G D DR + A V + EK+++ E + ++ I Sbjct: 6 KQQFVCLDCETTGLDPKEDRVIEVACVAFTLE-EKLDAFETL---IDPERDIPETSIAIH 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + V E ++ F + II + I+FD + R Sbjct: 62 HITQKMVAGKPKV-KEVLPKVLDFV---GSHIIVGHGIQFDIEAISHSCDRAGISKNLRD 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D +R + + L+ L IE AH A +DV Sbjct: 118 N-------PFIDTLRMARLY-----------GESPINSLEHLRKHFNIESEIAHRAMSDV 159 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL-IDIQNMTPLVHVSGMFGAS 233 + + + + L + L+++ + P + + Sbjct: 160 MVNIEVFKQLLKGYSSLKQLNKILAKPIMLKEMPLGKHKGRPFKEIPVQYLRW 212 >gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] Length = 453 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + + A R D Q + + + D V +TGI+ Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQ-KVTDRFISL---INPEKKIDDFVVRLTGIS 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++RI + CI+ +N FD F R +D Sbjct: 58 NKTVRQAPK-FYEVAKRIVEITED---CILVAHNASFDYRVLSLEFRRLGFD-------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + S+ L L + GI +N H A D AT Sbjct: 106 ------------YQRSTLCTVEMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMAT 153 Query: 185 LALVWLIREKKPK 197 + L L+ ++ + Sbjct: 154 VHLFKLLLDRDTQ 166 >gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] Length = 707 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 27/189 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FVI+D ET G + D AGVR+ + E F ++ G Sbjct: 513 SFVIFDTETTGLAPSEGDEIISIAGVRM-VNGRIL-EGECFEQLVNPGRPIPKASIKFHG 570 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + + + QF + ++ +N FD + R + Sbjct: 571 IRDEMVADKPG----IATVLPQFSAFVGDSVLVAHNAAFDMKFIRLKEGQCG-------- 618 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++ + D L+ +A G+E H A D Sbjct: 619 ------------LKFENPVLDTLLLSVFLHDHTPEHTLEAIANRLGVEISGRHTALGDTL 666 Query: 183 ATLALVWLI 191 T + + Sbjct: 667 VTGEIFAQM 675 >gi|332291494|ref|YP_004430103.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 1463 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 63/339 (18%), Positives = 99/339 (29%), Gaps = 33/339 (9%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPKNWNAPLTDSDNWPRAIQIAWQLHDEMGNVI-EHQDYLIKPDGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ A RDG+ +E + + S + N+ FD F+R Sbjct: 61 -DAERIHGISTALAERDGIELSEVLSKFNIALSKSK--YVVGQNVGFDTNIMGAEFHRL- 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 N + L V+ + Q P G FKL L G Sbjct: 117 ---------NIGNDLQELPVLDTCTEKTATLCQLPGGRGGK--FKLPTLTELHKHLFGEG 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 AH+A ADV AT E + + + N P+ + Sbjct: 166 FGEAHNATADVEAT---TRCFLELIRQRVYTKEELDVAPDYFERFSQSNPQPITFIGLKH 222 Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290 + +A IA + + + D+ L S + V Sbjct: 223 INLKKASAKIAQALAAQDDTPEISKAEIEENKEQLSDVKFAHLHNHSQFSILQSTASVQD 282 Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLT 329 +K L+K P + D + K Sbjct: 283 IVKAAALHKMPAVAMTDMGNMMGAFHFTKAVKSHNAFAK 321 >gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 731 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 27/185 (14%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G + D Q R+ K+ E F P + I GI Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRI--SGGKLRRQESFEQLVDPQRPIPPAGIPIHGI 598 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P ++ H F ++ +N FD + + R Sbjct: 599 KPDMVAGQPTIDH-VLPAFHAF---AQDTVLVAHNAAFDMRFLQLKQDRTG--------- 645 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + S +L+ +A I V H A D Sbjct: 646 -----------LVFDQPVLDTLLLSAVVHPNQESHRLEAIAERFSITVVGRHTALGDAMV 694 Query: 184 TLALV 188 T + Sbjct: 695 TAEVF 699 >gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 235 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 27/206 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D R + V V+R+ + F L + EA+ + GI Sbjct: 4 IVLDTETTGIDPRQGHRIIEIGCVELVNRRL----TGNTFHVYINPQRLIEQEAIEVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L V A+ + QF N + +N FD + + F R Sbjct: 60 TNEYLLDKPV-FADIAADFAQFI---NGAQLVIHNAPFDVGFMDHEFDRVA-SMVGKKTA 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 + + D L++ R I+ + L L GI+ H H A D Sbjct: 115 DMCTVLDTLEMARQIHPGQKN--------------NLDALCKRYGIDNSHRELHGALLDS 160 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207 + ++ + L + Sbjct: 161 EILADVYLMMTGGQTALNLSGKSNSD 186 >gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] Length = 958 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 27/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET G + + D Q ++ + V+ P +TGI Sbjct: 2 KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSI---SRVYGTYVNPGIPIPPFITGLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + ++ +N+ FD + +N R Y Sbjct: 58 SDSDVADAP-SLEEMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLP------ 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +LD M + P S++L ++ G+EH H A +D A Sbjct: 108 ---FSGRILDTMHFLKICFPSL----------PSYQLGMVSSHFGLEHDRPHQADSDALA 154 Query: 184 TLALVWLI 191 T + Sbjct: 155 TAYALLKC 162 >gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O] gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O] Length = 204 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 60/213 (28%), Gaps = 35/213 (16%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E +E+ + + T Sbjct: 5 NSVVVLDFETTGLSPNLGDRAIEIGAVKL-VNGEVVETFQQLM---NPGFRVSSFIESYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E +F + N + +N FD + R D Sbjct: 61 GITNNMLRSAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCD----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 F+ + A S KL +L N H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 156 Query: 181 VYATLALVWLIREKKPKL-----FEYLYDYRNK 208 T L L+ E+ +K Sbjct: 157 AQMTAKLWLLMVEELEHSGIANPSFQFMQTVSK 189 >gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 275 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 91/300 (30%), Gaps = 33/300 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T V +D ET G ++A DR + + ++V K E + A + Sbjct: 5 LTKPIVFFDLETTGVNIATDRIVEISILKVFPNGNK----ESKTWLVNPEIEIPQGATDV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + + E + ++ + + + G+N+ RFD R D Sbjct: 61 HGITNEKVVTEP-TFKELAGKVSEMIA--GCDLAGFNSNRFDIPLLAEELMRAGIDFD-- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + G E AH A+AD Sbjct: 116 --MQNRKAIDVQVIFHKKEQRTLSAG----------------YQFYCGKELEGAHGAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239 AT ++ EK + + + K D +F + Sbjct: 158 TNATYEILLAQVEKYDDIGNSVDALSEFSTHGKRADFAGFILFNDENQEIFSFGKYKGRT 217 Query: 240 I-APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + + +P Y + + + + Q+ +R+ D + + + N Sbjct: 218 VEEVLTENPGYNNWIQNADFPLYTKKVL----KQIKERMSAPKDTMSDEDKLKALQQKFN 273 >gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] Length = 169 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 52/197 (26%), Gaps = 32/197 (16%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 N FV D ET G A R + A V++ Q + I + Sbjct: 1 MNTFVAIDVETTGLSPARGARVIEIAAVKM-EQGQVIAEFCSL---IQVGVPVSAATTGV 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT E + F I +N FD + + R Sbjct: 57 HGITTAMLAGQPAP-GEIWPQFIWFIEHH---PIVAHNAPFDMRFVHSELQRLGLSMA-- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN---GIEHVNAHDA 177 N L + R Y + KL+ LA + H A Sbjct: 111 -----NPSHCTLRLGRRKY-------------PRLPNHKLEYLAQHVLGKLPPEIQLHRA 152 Query: 178 KADVYATLALVWLIREK 194 D T + +R + Sbjct: 153 LGDARLTAMVWEEMRRE 169 >gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J] gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J] Length = 242 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 57/211 (27%), Gaps = 27/211 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + A DR + V + F+ + D A+ + GIT Sbjct: 4 IILDTETTGLNAATGDRVIEIGCVEM-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R ++R Sbjct: 61 NEFVADKPK-FAEIVNEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLGLPAFREHLSG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 +D +R L L G+ H H A D Sbjct: 117 ------HIDTLREARQMF-----------PGKRNSLDALCDRLGVSNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 + + + L + + Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLESGEGASAEA 190 >gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 203 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G A DR + A V + R E ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPAQGDRATEIAIVLL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + + + + +N FD + ++ Sbjct: 57 TGITNDMIASAPP----VASVMREAAAFVGNHPVVAHNAGFDRRFWQSELGLLGVP---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 + + F+ + A S +L L + AH A Sbjct: 109 ----------------SAHEFACTLLVARRIYPQAPSHRLSSLVEMLSLPKTGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L ++ + + Sbjct: 153 DAEMASHLWCRLQSDMARTY 172 >gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 473 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 48/186 (25%), Gaps = 28/186 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G V D Q A RV + P + I G+ Sbjct: 270 FVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYV--NPGRAIPPASTRIHGVR 327 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + H F ++ +N FD R Sbjct: 328 DADVADAPSIE-QVIPAFHHF---SKDAVLVAHNAPFDIGLLRQQERATGIKW------- 376 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADVY 182 +LD + + L L IE + H A D Sbjct: 377 ---DHPVLDTVLLSAVVFGISQE----------HSLDALCQRLAIEIPAQHRHTALGDAK 423 Query: 183 ATLALV 188 AT + Sbjct: 424 ATAEAL 429 >gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] Length = 627 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D ET G D D V + ++ EV+ + + G+T Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLL--GSRVLRHEVYEALVDPGRPIPKASTEVHGLT 500 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F ++ +N FD + R Sbjct: 501 WEMLKDKPKLE-EVLPAFRAFLE---GSVLVAHNGAFDMAFLR---------------KV 541 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G + L+D + + PD +L+ LA G+ + H A D T Sbjct: 542 GIDQPPLVDTLLLAHLLFPDL----------KDHRLERLAERFGVPVLGRHTALGDALMT 591 Query: 185 LALVWLI 191 + + Sbjct: 592 AEVYARM 598 >gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] Length = 954 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G +V DR Q V V + E + E K V +TGI Sbjct: 19 YSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIMNHFET---KINPREKIPRSIVQLTGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E + + I+ + +N+ FD + R Y S Sbjct: 75 EDKDVRKAPLFE-DIAGTIYSLLAE---TTFVAHNVNFDFPFLNAELERAGYPSLS---- 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + A SF+L+DL + IEH + H A +D A Sbjct: 127 -----IPAIDTVTLSQILL----------PTAKSFRLRDLTSSLHIEHDHPHSAVSDAEA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ + ++ +L + Sbjct: 172 TADLLNDLLKRVQELPTLTLE 192 >gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 213 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 30/200 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ D+ET G DR + V + + + I+ + + T Sbjct: 14 DTVIVLDFETTGLSPNQGDRAIEIGAVML-KDGKVIDRFQQLM---NPGFRVSGFIENYT 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E + F N + +N FD + R Sbjct: 70 GISNEMLSDAKSCET-VMTQFADFIGDYN---LVAHNASFDQRFLDAELSRV-------- 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 N N M D A + KL L I+H H A AD Sbjct: 118 --NCNYPGQFACSMLIARRLYQD----------APNHKLGSLIHYKNIQHDGVFHRALAD 165 Query: 181 VYATLALVWLIREKKPKLFE 200 T L ++ E ++ Sbjct: 166 SEMTADLWLVMLEDLNADYQ 185 >gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus str. Walvis Bay] gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus str. Walvis Bay] Length = 246 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 17/201 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D E G D D VR+ + ++ LP I IT Sbjct: 49 FTVLDTELTGMDHRRDEIVSIGAVRIRGMAIQPG--ANWYAVVRPSCLPKA-CTLIHRIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + E S + +F +I +++ D + R Sbjct: 106 PSEVEAAP----ELSDVLPEFADYLGQSLIVGHHVGMDAAFLNRACKRIL---------G 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEHVNAHDAKADVYA 183 G LD MR + + S+ L DLA G+ AH+A +D Sbjct: 153 GPMANPCLDTMRLAQVYEEERWVSYYDRYNLRVSYNLTDLAAQYGLPSFPAHNALSDAMQ 212 Query: 184 TLALVWLIREKKPKLFEYLYD 204 L + K + + Sbjct: 213 AAYLFLFLVRKLRSGYVHTLK 233 >gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] Length = 234 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L V AE +F + + +N FD + R Sbjct: 62 EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEIASEH--- 114 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 115 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 + + K + + Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182 >gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] Length = 1476 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 22/201 (10%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D I + + +P +P Sbjct: 2 YLIFDTETTGLPRNWNAPLSDSDNWPRCIQIAWQLHDEMGNVI-EHQDYLVQPEGFNIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A G+ + + + T + N+ FD F R Sbjct: 61 -DAEKIHGISTELAAAKGISLEDMMAKFQEVLGK--TKFLVGQNVGFDLNIMGAEFLRLG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + N LLD A + A Sbjct: 118 LE-------NPLPDMPLLDTCTEATAQLCQIAGGRYGKFKLPTLTELH-QFLFNSPFGEA 169 Query: 175 HDAKADVYATLALVWLIREKK 195 H+A ADV AT + + ++ Sbjct: 170 HNATADVEATTRCFFELIRRQ 190 >gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG 19424] gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG 19424] Length = 246 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 60/208 (28%), Gaps = 27/208 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ P D D A+ + GIT Sbjct: 7 IVLDTETTGLNAATGDRLIEIGCVEL-MNRRLTGRHLHFYVNPERD--IDEGAIAVHGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I +F I +N +FD + F +R N Sbjct: 64 VEFLADKPR-FAEVVHDIREFVQDAELII---HNAQFDLGFLDMEFQLLGLPPFRQHVGN 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 ++D +R L L GI H H A D Sbjct: 120 ------VIDTLREARQMF-----------PGKRNSLDALCERLGISNAHRKLHGALLDAE 162 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210 + + + L D + Sbjct: 163 LLAEVYLAMTRGQDSLVIDTLDGGSGQD 190 >gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC 19977] gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium abscessus] Length = 327 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 30/242 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +V+ D ET G R A + +D +S P P + Sbjct: 11 SPKWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSL---LNPGVDPGP--THVH 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+TP+ ++ + + + +N+ FD + + Sbjct: 66 GLTPEMLEGQPE-FSDIAPDLIALLR---GRTLVAHNVGFDYSFLAAEAELVGAELPTE- 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 A + + +L+ LA G+E + AHDA D Sbjct: 121 ------------------AVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAYDDA 162 Query: 182 YATLALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 ++ + E+ + + + + K + + PL ++ N Sbjct: 163 RVLAEVLPKVLERARERGTWLPIRETTRKRWPNGRVTHDELRPLKTLASRQPCHWLNPGP 222 Query: 240 IA 241 Sbjct: 223 YT 224 >gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 309 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 29/190 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G D Q + ++V + I++ + + V+ITGIT Sbjct: 45 YIVLDIETTGLSSVSDDIIQLSALKVKED-KVIDTFDSY---VKPSTSIPENVVYITGIT 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + F ++G+N IRFD + N + +W Sbjct: 101 NSTVENAPEIF-EIMPKFVSFTE--GMPLVGHNIIRFDIPFIVNNGFYYEDIEALDTWR- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + KL L GI ++H+A D T Sbjct: 157 --------------------LAKNKDFPEPLKNLKLPTLKEYFGIS-GSSHNALDDCKTT 195 Query: 185 LALVWLIREK 194 + + +R+ Sbjct: 196 ITVYRHLRDN 205 >gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 453 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 31/234 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D E ++ + P V +TGI Sbjct: 2 YAIIDIETTGGQFNEEGITEIAIYKFDGH-EVVDQFISL---VNPEKPIQPFVVKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++RI + C+I +N FD + F R YD + + Sbjct: 58 NAMLRSAPK-FYEVAKRIIEITE---GCVIVAHNASFDYRILKTEFRRLGYDFKKQT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L A GI + H A D AT Sbjct: 111 -----------------LCTVELSKKLIPEQPSYSLGKLVRALGIPMADRHRANGDALAT 153 Query: 185 LALVWLIREKK--PKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRS 235 + L ++ K ++ + K+ + KL+DI P + Sbjct: 154 VKLFKMLLVKDIEKEIVKSFIKTEIKSGISPKLLDIVESLPSKTGIYYIHNEKG 207 >gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] Length = 869 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 25/191 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D E+ G + D Q A VR+ E + +P+ ++ I G+ Sbjct: 499 SLIVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMT-YLRPSRTV---GDSYAIHGL 554 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + ++G + R + F + +I +N+ +D ++ R Sbjct: 555 SDEFLQKNGT---DARRALQNFLTFAKDSLIVGHNVLYDISILQSELSRLSLPCPT---- 607 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D LD+ R Y + L+ L+ H +H+A D+ A Sbjct: 608 -EMPYMDTLDIYRRFY-------------PDLEKYTLEFLSHHFSTAHKPSHNAWDDILA 653 Query: 184 TLALVWLIREK 194 T L+ + ++ Sbjct: 654 TADLLQTVLQE 664 >gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pumilus SAFR-032] gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] Length = 930 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 61/203 (30%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D ET G D+ Q A V + + +E + +T Sbjct: 4 QRFVVVDIETTGNSPKKGDKIIQIAAVVI-ENGQIVERYSKY---VNPGKPIPGFIEQLT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI V + ++ ++ +N+ FD + + Sbjct: 60 GIQQHMVDDA-VFFEDIAQEVYDLIQ---GAYFVAHNVHFDLNFLNDELKACG------K 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +++ R +Y +KL +L+ + H + H A +D Sbjct: 110 NELDVLAIDTVEISRILY-------------PELEGYKLTELSEELMLPHDHPHRADSDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L + + + + Sbjct: 157 EVTAMLFLTLLHQLTHTPQNVLK 179 >gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] Length = 471 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 53/202 (26%), Gaps = 29/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D Q VRV + T + + I Sbjct: 278 SFVVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLV--NPGRPIPAASTGVHRI 335 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F +I +N FD + + + + + Sbjct: 336 TDDMVVNAPDP----VTATSDFHVFAKDAVIVAHNAPFDMAFLQRYGHMSGHVW------ 385 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 +LD + + L L IE A H A D Sbjct: 386 ----DHPILDTVLLSAVVFGAEQE----------HTLDALCARLDIEIPEALRHTALGDA 431 Query: 182 YATLA-LVWLIREKKPKLFEYL 202 AT L L+ + F+ Sbjct: 432 QATAQALCKLLPILTSRGFDTF 453 >gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] Length = 258 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 70/223 (31%), Gaps = 27/223 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +++ DR + A ++V K E + E + I Sbjct: 5 LTKPICFFDLETTGTNISKDRIVEIAVLKVFPNGNK----ESHTWLVNPEREIPAEVIAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + E +++IH + GYN+ RFD R D Sbjct: 61 HGITNEKVANEP-TFKELAQKIHDLIK--GCDLGGYNSNRFDIPLLVEELLRADIDFE-- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + G E AH A+AD Sbjct: 116 --MKNVVAVDVQTIFHKKEQRTLS----------------AAYQFYCGKELEGAHGAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 AT ++ +K L + + + RK D Sbjct: 158 TEATYEVLKSQLDKYQDLENDMKWLADFSSRRKFADFAGFISF 200 >gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] Length = 234 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L V AE +F + + +N FD + R Sbjct: 62 EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 114 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GIE H H A D Sbjct: 115 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIENSHRTLHGALLDAQI 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 + + K + + Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182 >gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] Length = 202 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 58/206 (28%), Gaps = 27/206 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D E G DV A VRV E Y +TGI Sbjct: 18 TFVVIDLEATGFDVEKSEVIDLAAVRV-EGGIITEKFSTL---VYPGYFIPERIKKLTGI 73 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + +F I+ + + D + Y + Sbjct: 74 TNAMLVGQPTIE----EVLPEFLEFVGDNIVVGHFVEQDIKFINK---------YTKQYR 120 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R L ++ P + + L+++A G E H A D Sbjct: 121 GKKFRNPSLCTLKLARKVFPGLKK----------YSLKEIAENFGFETNGVHRALKDATL 170 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T + I E+ + Y K Sbjct: 171 TAEIFIKILEELWFKYGIGDYYSLKR 196 >gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804] gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii] Length = 241 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D + R + V + + + D DPEA+ + G+T Sbjct: 4 IIFDTETTGLDPSQGHRIVEIGCVEI-VNRVVTGNHLHIY--LNPDRDSDPEALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ +++ +F + +N FD + Sbjct: 61 TEFLADKPR-FADVAQQFLEFIQGAE---LIAHNAAFDVKFFNAELSMIGRGDLS----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 A D +Q L L +GI H H A D Sbjct: 112 ------------QYCALVTDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQ 159 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 160 LLAEVWLAMTRGQD 173 >gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] Length = 457 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 64/206 (31%), Gaps = 28/206 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D E ++ + P V +TGI Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGH-EVVDQVISL---VNPERPIQPFVVGLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++RI + CI+ +N +FD R F R Y+ Sbjct: 58 NDMLRNAPK-FYEIAKRILEITQD---CILVAHNAKFDYRILRTEFRRLGYE-------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G S+ L L A GI + H A D AT Sbjct: 106 ------------YERETLCSVELSKKLLPGHASYSLGKLTKALGIPISSRHRADGDAIAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQ 210 + L L+ +K + + K + Sbjct: 154 VKLFKLLLQKDVDKEIIKANIKTKPK 179 >gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 29/253 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + AGV++ + E I+ E F + + +TGIT Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + F + I+ +N FD + + + + N+ Sbjct: 57 KGSDP-----IDVVLKQFKEWSGDNILVAHNASFDMGFINTAYEKVGIE------KAKNA 105 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L++ R +Y + +L L I H A D AT L Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 W + + ++ + + + + + + P + Sbjct: 153 AWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI 212 Query: 248 RYKDSVIGCNLSG 260 Y V S Sbjct: 213 NYFYRVPRIPRSQ 225 >gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] Length = 248 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 75 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L V AE +F + + +N FD + R Sbjct: 76 EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 128 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 129 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 172 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 + + K + + Sbjct: 173 LAEVYIELIGGKQTALGLTMESGS 196 >gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] Length = 248 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 75 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L V AE +F + + +N FD + R Sbjct: 76 EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 128 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 129 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 172 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 + + K + + Sbjct: 173 LAEVYIELIGGKQTALGLTMESGS 196 >gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 231 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 54/193 (27%), Gaps = 30/193 (15%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D+ET G RP + A V V R I+ + E +T Sbjct: 29 DTYAVIDFETTGMAPEHGARPTEIAVVLV-RNGCVIDRYQSLM---NAGVHVPYEIQALT 84 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT A+ + F + + +N FD + R Sbjct: 85 GITNAMVRAAP-PLAQVMAQAADFV---GSHALVAHNAAFDRKFWDAELDRLGR------ 134 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 R F + + + KL L G+ H A AD Sbjct: 135 --------------RREADFVCSLLLSRRVFPDSPNHKLGTLVRTLGLPASGRFHRALAD 180 Query: 181 VYATLALVWLIRE 193 AT L I Sbjct: 181 AEATAQLFARIAH 193 >gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330] gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str. 9-941] gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar Abortus 2308] gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840] gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365] gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445] gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19] gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99] gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99] gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330] gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str. 9-941] gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA polymerase 3, epsilon subunit [Brucella melitensis biovar Abortus 2308] gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840] gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365] gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445] gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99] gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] Length = 234 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L V AE +F + + +N FD + R Sbjct: 62 EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 114 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 115 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 + + K + + Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182 >gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] Length = 762 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 97/329 (29%), Gaps = 27/329 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI+D ET G D + V++ + I+ + F +L + +T IT Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + I QF + +N++FD + R D Sbjct: 463 DEMVQNADDENI----VIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDII------ 512 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ T L LA + + H A D AT Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L++ + + + F+ + + + + P Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 +Y + LS R+ + L + ++ ++ + + Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQ 333 P + ++ D K E +T + + Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYK 708 >gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp] gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 252 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 N +V+ D ET G V R + V E + F D D A+ Sbjct: 8 NRYVVLDTETTGMPVTDGHRIIEIGCV------ELLGRRLTGRHFHVYLNPDREIDEGAI 61 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + ++F I +N FD + N F Sbjct: 62 AVHGITNEYVADKPR-FRDVADEFYEFIKGAQLII---HNAAFDVGFINNEFALLGQSER 117 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 + S D L + R + + L L G+++ N H Sbjct: 118 AD-VSDYCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSNRELHG 162 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 163 ALLDSEILADVYLAMTGGQTH 183 >gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457] gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC 23457] gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28] gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 234 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L V AE +F + + +N FD + R Sbjct: 62 EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 114 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 115 --IVDTLALARRKHPIGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 + + K + + Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182 >gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. 16M] gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] Length = 248 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 75 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ L V AE +F + + +N FD + R Sbjct: 76 EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 128 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R + P+ L L GI+ H H A D Sbjct: 129 --IVDTLALARRKHPIGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 172 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 + + K + + Sbjct: 173 LAEVYIELIGGKQTALGLTMESGS 196 >gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] Length = 375 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSSADHRITEIGVVEIGPLG-----VSTWTSLVNPGQAIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F+ F + + +N FD + R F R Sbjct: 70 DAMVRDAPT----FASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLTFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPAARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRQLHE 174 >gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 253 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 7/123 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T + +D ET G ++A DR + A V+ E+ + + PE I Sbjct: 3 LTKNICFFDLETTGTNIAKDRIVEIAIVKAYTNG----EKEIKTWRVNPEMPIPPETSLI 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E + +I + + + G+N+ RFD F RN D Sbjct: 59 HGIYDEDVKDAP-TFREIAPQIVELIKDSD--LAGFNSNRFDIPLLAEEFLRNGIDFDLE 115 Query: 121 SWD 123 Sbjct: 116 KHR 118 >gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 375 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + + F + + +N FD + R F R Sbjct: 70 DDMVRDAP-SFASLAPTL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRQLHE 174 >gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] Length = 971 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 27/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET G + + D Q ++ + V+ P +TGI Sbjct: 15 KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSI---SRVYGTYVNPGIPIPPFITGLTGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + ++ +N+ FD + +N R Y Sbjct: 71 SDSDVADAP-SLEEMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLP------ 120 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +LD M + P S++L ++ G+EH H A +D A Sbjct: 121 ---FSGRILDTMHFLKICFPSL----------PSYQLGMVSSHFGLEHDRPHQADSDALA 167 Query: 184 TLALVWLI 191 T + Sbjct: 168 TAYALLKC 175 >gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9] gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9] Length = 214 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 59/202 (29%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N ++ D+ET G DR + V + E ++ + + T Sbjct: 13 NTVIVLDFETTGLSPTQGDRAIEIGAVLM-ENGEVVDRFQKLM---NPGFRVSSFIESYT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E + F N + +N FD + D S Sbjct: 69 GITNNMLRTA-APCDEVMDQFTDFIGDYN---LVAHNASFDKRFLDAE-----LDIINRS 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 + G + + R +Y A + KL L I+H H A AD Sbjct: 120 Y--GGEFACSMLIARRLY-------------QNAPNHKLGSLVAYKNIDHDGVFHRALAD 164 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L + E F + Sbjct: 165 SEMTAKLWLQMLEDMRNQFHII 186 >gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 204 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 30/193 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + N V+ D+ET G DR + V++ + +++ + + Sbjct: 3 LANQVVVLDFETTGLSPDNGDRAIEIGAVKL-VNGQIVDTFQEL---INPGRRVNSFIEQ 58 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGI+ + + +F + + +N FD + F + Sbjct: 59 YTGISNDMLKHAPTS-KQVMGQFAKFI---DGFNLVAHNASFDKKFLDAEFSHS------ 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178 + F+ + A + KL L + + + H A Sbjct: 109 --------------KLHYSGQFACSLLLSRRISQDAPNHKLGTLVDHHQLPNDGVFHRAL 154 Query: 179 ADVYATLALVWLI 191 AD T L Sbjct: 155 ADATMTSHLWLHQ 167 >gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis 3_1_12] gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12] gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12] Length = 257 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 82/257 (31%), Gaps = 30/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + E+ + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTLRINPEMPIPAESSAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + G+N+ RFD F R Sbjct: 61 HGIFDADVADCP-TFKEVAKSIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + F + + + S + N +AH A+AD Sbjct: 112 -----------VDIDMSKRKFVDVQVIFHKMEQRTLSAAYKFYCGRN---LEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT ++ ++ P+ + + + + + M + +F + Sbjct: 158 TRATYEVLMAQLDRYPEDLQNDMSFLADYSSYNKNVDFAGRMVYDDNGVEVFNFGKYKGQ 217 Query: 239 LIAPVA-WHPRYKDSVI 254 ++ V P Y ++ Sbjct: 218 PVSEVLKKDPGYYSWIL 234 >gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 258 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 27/215 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V +D ET G ++ DR + + ++V + E+ + + EA I Sbjct: 5 LKRPIVFFDLETTGTNIISDRIVEISYLKVMPN----DEKEIKTRRINPEIPIPKEASDI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + ++ + + GYN+ RFD F R D Sbjct: 61 HGITNEDVKNA-LPFKAIAKLLASQIE--GCDLAGYNSNRFDIPILAEEFLRAGIDVDWT 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + L L + NAH A D Sbjct: 118 KQKF----VDVQTIFH----------------KKEPRTLLAALKFYCNRDLENAHSAAED 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215 AT ++ +K P L + N + K Sbjct: 158 AKATYEVLKAQLDKYPDLQNDIIFLSNYSSFNKKN 192 >gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 204 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 58/202 (28%), Gaps = 31/202 (15%) Query: 1 MT-NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ + V+ D+ET G DR + V++ +Q ++ + + Sbjct: 1 MSQDAIVVLDFETTGLSPLQGDRAIEIGAVKL-QQGVVVDRFQQLM---NPGFAVSSFIA 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 TGIT E F C + +N FD + F R + Sbjct: 57 DYTGITNAMLSDAPSCET-VMADFADFIQ---GCHLVAHNASFDQKFLTAEFARIDLEQ- 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDA 177 F+ + + +L L GI + H A Sbjct: 112 -------------------SQPFACSLLLARRLFQAVPNHQLGTLVNYLGIANDGVFHRA 152 Query: 178 KADVYATLALVWLIREKKPKLF 199 D T AL + + + + Sbjct: 153 LNDAEVTGALWLALSDAVSQRW 174 >gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM 2032] gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM 2032] Length = 218 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 30/190 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D+ET G DRP + VR++ ++ + + +TGI+ Sbjct: 7 IVLDFETTGHSPNRGDRPIEVGAVRIEHD-RIVDRFQALM---NPGFTISWFIERLTGIS 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E R + + +N FD + Sbjct: 63 NDLIAHAPPCE-EVMNRFADWM---GDLPLVAHNAGFDRAFLDAELALIGR--------- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 + + + + KL L GI H A AD Sbjct: 110 -----------HQSNPMACTVLASRRLFPESPNHKLATLVNHLGIFTDGTFHRALADAEM 158 Query: 184 TLALVWLIRE 193 T + + + Sbjct: 159 TGHVWIAMTD 168 >gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata HTCC2501] Length = 258 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D ET G ++A DR + A ++V K E EA I Sbjct: 5 LSKPICFFDLETTGTNIATDRIVELAILKVFPNGNK----ESKTWLVNPGVPIPEEASAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GIT +K + E +R ++Q + G+N+ RFD R D Sbjct: 61 HGITDEKVAGEP-TFRELAREVYQMIQ--GCDLAGFNSNRFDIPLLAEELLRAGVDF 114 >gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] Length = 442 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 69/249 (27%), Gaps = 28/249 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D + + +TGI Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYQFDGH-TITDQFISL---INPERPIQDYVTKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + CII +N FD + F R Y+ + + Sbjct: 58 NKMLRNAPK-FYEIAKRIVEITE---GCIIVGHNAAFDYRILQTEFRRLGYEYIKTT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L + GI H A D AT Sbjct: 111 -----------------LCTVELSQQLIPDKESYSLGKLVRSLGIPMSERHRASGDAMAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L L + EK K +N +L + + + + I V Sbjct: 154 LNLFKYLLEKDTKKSIITASVKNDVRLEMASRHLKILDALPETLGVFYIHNKEGKIIYVG 213 Query: 245 WHPRYKDSV 253 H K V Sbjct: 214 KHKNIKGRV 222 >gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 298 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 32/193 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D + +RV R E + E + D +TGIT Sbjct: 12 YCVLDTETTGLSAYYDEVIEIGILRV-RNGEITDRYEQL---IKPENEIDGFITSLTGIT 67 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + + F + II +N FD + F+ + + Y Sbjct: 68 NEMVADKPAIE-DVKSDVLAFL---GSDIIVGHNTSFDVRFLAAGFHEDIANEY------ 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D M+ PD +L DL+ N H A AD T Sbjct: 118 -------MDTMQFARKLYPDLTH----------HRLSDLSEYL-YLTNNEHRALADCVTT 159 Query: 185 LALVWLIREKKPK 197 L ++ + + Sbjct: 160 EELYEAMKTEMIR 172 >gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] Length = 252 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 +V+ D ET G V R + V E + F D D A+ Sbjct: 8 KRYVVLDTETTGMPVTDGHRIIEIGCV------ELLGRRLTGRHFHVYLNPDREIDEGAI 61 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + E + ++F I +N FD + N F Sbjct: 62 AVHGITNEYVADKPR-FREVADEFYEFIKGAQLII---HNAAFDVGFINNEFALLGQSER 117 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 + S D L + R + + L L G+++ N H Sbjct: 118 AD-VSDYCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSNRELHG 162 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 163 ALLDSEILADVYLAMTGGQTN 183 >gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] Length = 1460 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 74/212 (34%), Gaps = 30/212 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + + +P +P Sbjct: 2 YLIFDTETTGLPKRWDAPISDTDNWPRCIQIAWQLHDELGNLI-EHQDYLVQPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A G+ E + + S T I N+ FD FYR Sbjct: 61 -DAEKIHGISTELAAEQGISLQEVLEKFNIALSK--TKFIVGQNVGFDVNIMGAEFYR-- 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 +N ++ L V+ + Q P G FKL L G+ Sbjct: 116 --------ENVANKLQELPVLDTCTEDTAQLCQIPGGRGGK--FKLPTLTELHQYLFGVG 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 AH+A ADV AT + +K E L Sbjct: 166 FGEAHNATADVEATTRCFLELIRRKEYTIEQL 197 >gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1495 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 68/219 (31%), Gaps = 19/219 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGI 63 +V D ET G D +R + + R + E +E F + + +TGI Sbjct: 445 YVALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPEVKLPEFIMKLTGI 504 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + G+ + + + F + +N FD + R +R D Sbjct: 505 TQAEV-DSGIKPLQAVQDLIDFV---GDLPVCAHNAMFDIGFIRAEGFRT-QDINDPKLK 559 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + + ++ KL + I+ + H A D A Sbjct: 560 FNPITIDTLRLSVLFW-------------PSLSNHKLDTVCNFLQIDLAHHHRAVDDAIA 606 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + + +L + R+ + I + P Sbjct: 607 CGQIFARACQIDSELTLTSLNQRSGLLRPEEITDKEHKP 645 >gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 375 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQAIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + + + + + +N FD + R F R Sbjct: 70 DEMVRDAP-SFASLAPALVERL---DGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRQLHE 174 >gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 205 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 29/210 (13%) Query: 4 HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F ++D ET G R + V+V ++ + F A + G Sbjct: 10 TFTVFDTETTGMSPDKGARLLEIGAVKVKPGL-VLDLQDSFCTLINPKAPIPYNAYSVHG 68 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ E + FFS II +N RFD + + Sbjct: 69 ISTAMVADKP----EIKDVLPGFFSFTENTIIAAHNARFDCSFVSHHSAEC--------- 115 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH----VNAHDAK 178 ++ + S G S+ L +L ++ H A Sbjct: 116 ----------CIVNPMTKIVDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYRHRAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNK 208 D T L+ + +K + +K Sbjct: 166 YDAAHTALLLTICLKKLAAQDICTMRHISK 195 >gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] Length = 462 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + + + + D + + ++ + +TGIT Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIFDGK-KIVDEFTSL---VNPEQNIPAFITSLTGIT 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++++ + I +N+ FD + F +D R Sbjct: 59 NAMVRNAPR-FFEIAKKVAEITEN---TIFVAHNVNFDYNIIQAEFKSLGFDFKRKK--- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L ++ I H AK D AT Sbjct: 112 -------LCTIRLTRKI----------IPGLPSYSLGNICTGENIPINGRHRAKGDAEAT 154 Query: 185 LALVWLIREKKPKLFEYLYDY 205 L+ + E+ + Sbjct: 155 AELLRRLIERDENFTINSFLN 175 >gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149] gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149] Length = 465 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 50/187 (26%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D D Q VRV + I EVF P + + I Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRV-VNGKII-EGEVFDTLVNPGRTIPPGSTAVHQI 329 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 R HQF +I +N FD + R Sbjct: 330 NDAMVADAPG-FDVACRAFHQF---AEHAVIVAHNAPFDMAFLRRQCR----------NQ 375 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 + +LD + G+ L L I H D Sbjct: 376 DYAFDNPVLDTVHLSAVVF----------GGSAEHTLDALCNRLNVHIPDDVRHTGLGDA 425 Query: 182 YATLALV 188 AT + Sbjct: 426 LATAKAL 432 >gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 212 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G DR + V++ ++ + + P T Sbjct: 13 HTVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGVVVDRFQGLM---NPGFRVSPFIENYT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E F C + +N FD + + Sbjct: 69 GISNRMLADA-ASCDEVMNEFANFIQ---GCNLVAHNASFDKRFLDGELALIQREY---- 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 D + + + A+S KL DL + IE+ H A AD Sbjct: 121 ------DGDFACSLLVSRRLTQE----------ASSHKLGDLVAYHQIENDGVFHRALAD 164 Query: 181 VYATLALVWLIREKKPKLF 199 T +L ++ E + Sbjct: 165 AEVTASLWLVLLETLEREH 183 >gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK] gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK] Length = 214 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N ++ D+ET G DR + V + + ++ + + T Sbjct: 13 NTVIVLDFETTGLSPTQGDRAIEIGAVLM-ENGKVVDRFQKLM---NPGFRVSSFIEGYT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E + F N + +N FD + D + S Sbjct: 69 GITNNMLRTA-APCNEVMDQFTDFIGDYN---LVAHNASFDKRFLDAE-----LDIIKRS 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 + G + + R +Y A + KL L I+H H A AD Sbjct: 120 Y--GGEFACSMLIARRLY-------------QNAPNHKLGSLVAYKNIDHDGVFHRALAD 164 Query: 181 VYATLALVWLIREKKPKLFE 200 T L + E F Sbjct: 165 SEMTAKLWLQMLEDLQNQFH 184 >gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 375 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G +A R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSLADHRITEIGVVEIGPLG-----VSTWTSLVNPGQAIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F+ F + + +N FD + R F R Sbjct: 70 DAMVRDAPT----FASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPAARHRALADADLL 165 Query: 185 LALVWLIRE 193 + + Sbjct: 166 WQFWRQLHD 174 >gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 204 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 32/204 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + ++D ET G D D+ + A +R D + +V K PE + + Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGRLDVRITK-NSGTKLTPEIINL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI G+ E + F S + ++ ++ + + R + Sbjct: 59 TGINESMMRG-GIPEELAIPLLACFMS--GSIVVAHH-----APFDLSFLARYLVEP--- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + S L +A GIE H A AD Sbjct: 108 -------------------SSFVCTRVLSKLVEPGESASLAAVAERRGIELTGHHRAMAD 148 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 V AT+ + ++ + L Y+ Sbjct: 149 VEATVKIFQQLKAEADALGIRYYN 172 >gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 645 Score = 92.2 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 27/188 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G + + D Q R+ K+ E F V I GI Sbjct: 455 YTVFDTETTGLEPSAGDEIIQIGATRIVAG--KLRRHESFEQLVDPQRAIPERTVAIHGI 512 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP + E +H F +T ++ +N + Sbjct: 513 TPAMVAGQPTI-REVLPALHAF--AHDTVLVAHNAAFDLRFLELKERAAG---------- 559 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +R + L+ +A G+ + H A D Sbjct: 560 -----------VRFDMPVLDTLLLSQVLHPNQERHSLEAIAERLGVPVLGRHTALGDAIV 608 Query: 184 TLALVWLI 191 T + + Sbjct: 609 TAEVFLKM 616 >gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] Length = 196 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 27/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D ET G A + A +++ S F + I GI Sbjct: 10 FTALDIETTGLSPAFCGIVEIAALKIFPDG----SQRSFQMLVDPGRPIPRDVSAIHGID 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + S + +N FD + + R + + Sbjct: 66 DAMVRGQPS----AADAVAALVSFVGPSPLVLHNAPFDMSFLNPVVRR------QRLQWD 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D L + R + S+ L+ L+ + H A AD Sbjct: 116 SPAVFDTLRLSRQAFPGLN-------------SYSLESLSRFFDFDAGGHHRALADCRYC 162 Query: 185 LALV 188 + L Sbjct: 163 VQLF 166 >gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110] Length = 304 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 49/178 (27%), Gaps = 30/178 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D ET G D D + A V D E F PE +TGI Sbjct: 48 VFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDPGRPIPPEVSAMTGI 107 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE + F ++ +N FD ++ + + SW Sbjct: 108 TDAMVAGAAIEPAEI-----EAFLGDTAALVVAHNCSFDRRFAERFCPAFAHLPWACSWA 162 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R + KL LA A G H H A D Sbjct: 163 EIPWR----------------------EEGFVDGTKLVHLAAACGFFHEG-HRAVHDC 197 >gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI 454] gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 247 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + DR + V + + + F+ P D DP A+ + G+ Sbjct: 3 LLVLDTETTGLNAKGGDRIIEIGCVEI-VNRQLTGNNLHFYVNPERDS--DPGALAVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE + + F + I +N FD + F + Sbjct: 60 TTEFLRDKPK-FAEIADALRDFVKDADIII---HNAPFDIGFLNAEFAMLGLPPFC---- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 + +++D + A L L GI H H A D Sbjct: 112 --DHCGEVIDTLVQAKAMF-----------PGKRNSLDALCERFGISNAHRTLHGALLDA 158 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 + + + L + Sbjct: 159 ELLADVYLAMTRGQESLVIDMLA 181 >gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW] gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW] Length = 699 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 31/203 (15%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFI 60 +V++D ET G + + D AGVR+ + E+ + + I Sbjct: 505 SYVVFDTETTGLNPSQGDEMVALAGVRI-VNGRILTGETFQTL---INPGRAIPAASAAI 560 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT EA F ++ +N FD + R Sbjct: 561 HGITDAMVAEAPRAEA-VLPPFRAFV---GDAVLVAHNAAFDLKFLRLKQRAAG------ 610 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +R I L LA GI V+ H A D Sbjct: 611 --------------VRFDGPVLDTMILSRQIQGDHGEHSLDGLAARLGIGLVDRHSAMGD 656 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 T A+ + + Sbjct: 657 SLMTAAIFLRLMDMLETQGIRTL 679 >gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL S4-171] Length = 921 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 28/180 (15%) Query: 8 YDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G DR QFA V +++E+ F + +TGI+P+ Sbjct: 2 VDLETTGNQASREDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQELTGISPK 57 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E + + I I +N+ FD + R Sbjct: 58 DVKDAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI------SLGKM 107 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + D +++ R +Y G S+KLQDL+ G+ H H A +D T Sbjct: 108 KKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTAD 154 >gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] Length = 929 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 1 MTNH-FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + + D E G D D R Q V + +++ + K Sbjct: 1 MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFV-ENGKIVDTFQS---KVNPQRPIPAGIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + +++ + +N+ FD + R+ Y Sbjct: 57 KLTGITDEQVQNAPK-FNDIVDEVYRKLVD---TVFVAHNVEFDFPFLNQELVRSGYPEL 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 D + + + +++F ++L+DL IEH + H A Sbjct: 113 ------NIPAVDTVSLSQIVFSF-------------TKGYRLRDLTSYLKIEHDDPHSAD 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 +D AT L+ I++ +L + Sbjct: 154 SDAIATANLLIAIKKNLQQLPIVTLE 179 >gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1] Length = 587 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 21 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 75 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 76 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 126 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 174 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 175 TVDVLHGLIDRVGNLGVTTLE 195 >gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3] Length = 584 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 18 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 73 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192 >gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1] Length = 597 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 31 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 86 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205 >gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3] Length = 604 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 38 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 92 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 93 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 142 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 143 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 191 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 192 TVDVLHGLIDRVGNLGVTTLE 212 >gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2] Length = 587 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 21 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 75 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 76 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 126 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 174 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 175 TVDVLHGLIDRVGNLGVTTLE 195 >gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2] Length = 604 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 38 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 92 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 93 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 142 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 143 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 191 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 192 TVDVLHGLIDRVGNLGVTTLE 212 >gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2] gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1] gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3] Length = 604 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 38 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 92 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 93 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 142 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 143 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 191 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 192 TVDVLHGLIDRVGNLGVTTLE 212 >gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2] Length = 597 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 31 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 86 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205 >gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1] gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1] gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1] gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1] gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1] gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1] gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3] gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1] gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL099PA1] Length = 590 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 24 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 79 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 129 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 177 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 178 TVDVLHGLIDRVGNLGVTTLE 198 >gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1] gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4] gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2] gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1] gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2] gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL097PA1] gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2] gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2] Length = 597 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 31 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 86 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205 >gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1] Length = 597 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 31 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 86 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205 >gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1] gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2] gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1] gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1] gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1] gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1] gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1] gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1] gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA2] gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1] gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2] gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266] Length = 587 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 21 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 75 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 76 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 125 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 126 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 174 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 175 TVDVLHGLIDRVGNLGVTTLE 195 >gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1] gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2] gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1] gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1] gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3] gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1] gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1] gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2] gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2] gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1] gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2] Length = 584 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 18 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 73 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192 >gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] Length = 198 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 27/181 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D + A V+ Q + + KP E I GI Q Sbjct: 24 FDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPH--PIPAEVTKIHGIGDQD 79 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + F T ++ +N FD + R + R G Sbjct: 80 VEEAP-PLPSVLPMLESFV---GTHLLVAHNAPFDLSFLRMEYARCGRPYP------GFR 129 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D + R++ + L L A I + H A +D +A L Sbjct: 130 AIDTRLLARSV-------------LPHLGRYSLASLTRALDIPLQHHHRALSDAWACGDL 176 Query: 188 V 188 Sbjct: 177 F 177 >gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum CFBP2957] gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CFBP2957] Length = 242 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ + D A+ + GIT Sbjct: 4 IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R S + Sbjct: 61 NEFVADKPK-FAEVVAEIRDYVQGAEAII---HNAAFDLGFLDMEFRRLGLPS-FREHLD 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 G+ D L R ++ L L G+ H H A D Sbjct: 116 GH--IDTLLEARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQNTLVIDML 180 >gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 921 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 32/188 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ FV+ D ET G D D + VRV + + Sbjct: 1 MSRTFVVLDLETTGLDPQADEIVEVGLVRV-EDGKPGAVFHAL---VRPSRPLPARIKSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+ +E + F N ++G++ + R+ YR Sbjct: 57 TGLDDADLAERP-DWSEVRPAVTAFL--GNEPVVGHHVHFDLAFLERHAGYRA------- 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D +D+ R + G S++L+ L + H A D Sbjct: 107 -----TQAYDTVDLARLV-------------LPGLPSYRLELLCAHLDLPERPGHRAMED 148 Query: 181 VYATLALV 188 A L Sbjct: 149 ARAAAGLF 156 >gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056] gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056] Length = 256 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 83/256 (32%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + EA + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPAEASAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E +R I + G+N+ RFD F R D Sbjct: 61 HGIYDEDVADCP-TFKEVARGIANDIE--GCDLAGFNSNRFDIPVLAEEFLRADVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A+AD Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQL-RKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ ++ P L + + + + + M +F + Sbjct: 158 TRATYEVLMSQLDRYPDLQNDVTFLSDYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VADVLKRDPGYYSWIL 233 >gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114] gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114] Length = 465 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 51/187 (27%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D D Q VRV + I EVF P + + I Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRV-VNGKII-EGEVFDTLVNPGRTIPPGSTAVHQI 329 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + R HQF +I +N FD + R Sbjct: 330 SDAMVADAPG-FDVACRAFHQF---AEHAVIVAHNAPFDMAFLRRQCRD----------Q 375 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 + +LD + G+ L L I H D Sbjct: 376 DYAFDNPILDTVHLSAVVF----------GGSAEHTLDALCDRLNVHIPDDVRHTGLGDA 425 Query: 182 YATLALV 188 AT + Sbjct: 426 LATAKAL 432 >gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] Length = 298 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 65/212 (30%), Gaps = 37/212 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61 ++ D ET G D A D +F V D + +P+ P+ +T Sbjct: 45 IVLDLETTGLDPAKDEIIEFGLVPFTYDAGGRIVAVGEPFSRLRQPSG--PIPPDVTKLT 102 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T V AE + I +I +N FD ++ Sbjct: 103 GLTDAMVAGQVVDPAEVATFI------DGAALIIAHNAGFDRRFAEA------------- 143 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 A ++ Q + G S KL LA A G H H A D Sbjct: 144 ----------FCPAFAQKPWACSYTQIDWQAHGHESGKLAFLACAYGFFHDG-HRAHHDC 192 Query: 182 YATLAL-VWLIREKKPKLFEYLYDYRNKNQLR 212 ATL + + F+ L + +R Sbjct: 193 LATLEILASPLGATDGSAFQTLLATARRASVR 224 >gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 719 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 53/187 (28%), Gaps = 26/187 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G A D VR+ + KP A GI+ Sbjct: 525 VVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKPCRAIPDS--ATRFHGIS 582 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + R +F + ++ +N FD + R R Sbjct: 583 NEDVARAPEIGP-VLRAFSRFIGEES--VLVAHNAAFDMGFLRRAQARAG---------- 629 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + D + L+ +A G+E H A AD T Sbjct: 630 ----------LAFPQPVLDTLLLSVYLHDHSPDHTLEGVAERLGVEVQKRHSALADARVT 679 Query: 185 LALVWLI 191 + + Sbjct: 680 ADVFARM 686 >gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp. longum JDM301] gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. longum JDM301] Length = 235 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 56/222 (25%), Gaps = 33/222 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV ++ + + +TGIT Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + R + + P I+G+N F D Sbjct: 90 DAMVADLD-PIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLR----------FLDYNT 138 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D M+ A P +L DL + GI H A + Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188 Query: 180 DVYATLAL---VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 D T + + + + +++ Q Sbjct: 189 DAIQTQQCFEWMRHYVTEHHESEAIRWKQSPAKNSTEILHQQ 230 >gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702] Length = 186 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 26/187 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK-PADDYLPDPEAVFITGIT 64 V+ D ET G D DR + A +RV F + +TG+T Sbjct: 22 VVVDCETTGLDPDSDRIIEVAALRVRE-----GRPVALFHRVVDPGRPLPGFITSLTGLT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q+ + + + F + + +N+ FD + + Sbjct: 77 DQQVRQAP-PVGDILGDLSAFLAH---DTVVGHNVGFDLAFIDAE--------ITTTHST 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + L + A ++L LA A ++H +H +DV AT Sbjct: 125 PRAASLSLCTAESARAL--------VPRSRVGRYRLNTLAEAFDLDHRPSHRTVSDVLAT 176 Query: 185 LALVWLI 191 L L+ + Sbjct: 177 LDLLHYL 183 >gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10] Length = 1436 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 27/218 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D + V++ + E IE + F + + + +T IT Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 474 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++ F + +N++FD + R Sbjct: 475 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 524 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+V R ++ L LA + + H A D AT Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 571 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 L++ + + K + + P Sbjct: 572 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARP 609 >gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 204 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 30/192 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D+ET G A DR + A V + + ++ + + Sbjct: 1 MDVVAVIDFETTGLSPAQGDRATEIAAVIL-ENGKVVDRYQSLM---NAGVRIPSFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ A+ R + F + +N FD + R Sbjct: 57 TGISNAMIRSAP-PAAQVMREVSDFV---GDIPLVAHNASFDCKFWDAEVARIN------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 ++ F+ + A S KL L + AH A A Sbjct: 107 --------------LQRCQEFACSLLLARRLMPLAPSHKLGALIEFAKLPVAGRAHRALA 152 Query: 180 DVYATLALVWLI 191 D +L+ + Sbjct: 153 DAEMAASLLAYL 164 >gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 204 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 30/193 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + N+ V+ D+ET G + DR + V++ + ++S + + Sbjct: 3 LANNVVVLDFETTGLSPDMGDRAIEIGAVKL-VDGQVVDSFQAL---INPGQRVNSFIEQ 58 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGI+ Q + +F + + +N FD + F N Sbjct: 59 YTGISNQMLKDAPRSNV-VMGQFTEFIA---GFNLVAHNASFDKKFLDAEFSAN------ 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178 + F+ + A + KL L + + + H A Sbjct: 109 --------------KLSYSGQFACSLLLSRRISQEAPNHKLGTLIQHHQLANDGVFHRAL 154 Query: 179 ADVYATLALVWLI 191 AD T L Sbjct: 155 ADATMTANLWLHQ 167 >gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 232 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 12/200 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D D V ++ ++ T KP D P E++ + +T Sbjct: 37 YTVIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIRVHHLT 96 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + E + + ++ + + D + + Sbjct: 97 PAELQNAPPAE----EVLAELLRRIAGRVLVVHVAQVDVRFINAALK-------PFGGKL 145 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + ++ + + P + +L+ LA A G+ H+A D T Sbjct: 146 RRPILDTARLALTLHMNARWLGEQPHDMPD-PAIELRGLATALGLPVYAQHNALNDAVTT 204 Query: 185 LALVWLIREKKPKLFEYLYD 204 L Sbjct: 205 AQLFIAQATILADQGRSNLA 224 >gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 205 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 39/225 (17%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R E ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + S+ + + + + + +N FD + + Sbjct: 57 TGITNEMIATAPP----VSKVMKEAAAFVGSHPVVAHNAGFDKRFWQAELGSLG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + A + F+ + A S +L LA + AH A Sbjct: 107 --------------VAADHPFACTMLVARRLYPHARSHRLSSLADLLRLPQAGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215 D L ++ + + +K ++ Sbjct: 153 DAEIASHLWCRMQRDIGETYGLRHVDHGLMSRLQTTSKAKVATFF 197 >gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 233 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 28/213 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M N +V D ET G + A+DR + RV + + + Sbjct: 1 MINRYVALDIETTGLNPAVDRIIEVGMARV-EDGQITQKYSTL---VYPGISVSERITEL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI ++ +E + I +F + +N+ FD + + N Sbjct: 57 TGIHNEELTGKPRIE-DIIGEITEFIGDW---PVLGHNVIFDFSFLKKAAVNNGLTIND- 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +D ++ P+ L L I+ +H A D Sbjct: 112 ---------DGIDTLKLARRILPEVEH----------KSLSFLCQYFNIDPGRSHRAYDD 152 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 + L + E KP + + ++K Sbjct: 153 AVSASLLYAKLEEIKPDDEGFSNTTKLVYTVKK 185 >gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697] gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA] gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697] gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA] Length = 256 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + EA + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMHIPAEASAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E +R I + G+N+ RFD F R D Sbjct: 61 HGIYDEDVADCP-TFKEVARSIANDIE--GCDLAGFNSNRFDIPVLAEEFLRADVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A+AD Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + + + + + + + + M +F + Sbjct: 158 TRATYEVLMSQLDRYPELQNDVAFLSDYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VADVLRRDPGYYSWIL 233 >gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 442 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 74/251 (29%), Gaps = 32/251 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A R D E + + +TGI Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYRFDGH-ELTDQFISL---INPERPIQDFVTKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + II +N FD + F R YD R + Sbjct: 58 NKMLRNAPK-FYEVAKRIVEITQD---TIIVGHNAAFDYRILQTEFRRLGYDYIRTT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L + GI H A D AT Sbjct: 111 -----------------LCTVELSQQLLPEKESYSLGKLVRSLGIPMSERHRASGDALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM--FGASRSNTALIAP 242 L L + EK K + + KN +R + +++ L + + I Sbjct: 154 LNLFKYLLEKDTK--KTIITASVKNDVRIEMSSRHLKILDELPEKLGIFYMHNEEGKIIY 211 Query: 243 VAWHPRYKDSV 253 + H K V Sbjct: 212 IGKHKNIKKRV 222 >gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2] Length = 584 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 18 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 73 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L ++ Sbjct: 172 TVDVLHGLIDRVGNLGVTTFE 192 >gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1] Length = 584 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 18 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 73 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L ++ Sbjct: 172 TVDVLHGLIDRVGNLGVTTFE 192 >gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2] Length = 590 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 24 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 79 THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 129 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 177 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L ++ Sbjct: 178 TVDVLHGLIDRVGNLGVTTFE 198 >gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] Length = 229 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 26/188 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + DR + A R D + ++ D + I GIT Sbjct: 31 FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTL---INPDGK-QIKNSHIHGIT 86 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E +F + + ++ +N FD R D Sbjct: 87 NADVAHAP-TFPEVYT---EFAARVDGMVLMAHNAPFDSKMILAEAERITPD-------G 135 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + +D + + S+KL L G+ + +H A AD AT Sbjct: 136 EDVYFPFVDTI-----------ALAKQMVSLRSYKLSALLDHVGLHNPQSHAAIADATAT 184 Query: 185 LALVWLIR 192 ++ + Sbjct: 185 GQMLNKLF 192 >gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] Length = 194 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 22/200 (11%) Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 + D ET G + P Q AG+ D + +E + +P +P Sbjct: 2 ILFLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEEGTLLEQLN-YLVRPEGYTIP- 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 V I GIT ++AL +GV A+ ++ +N+ FD ++R Sbjct: 60 AAVVRIHGITTERALAEGVPVAQVLNDFRSILEKSK--LLVAHNVNFDHAIVGAEYHRYV 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVN 173 + M + + S G KL++L Sbjct: 118 KEDPLLP-------IPKFCTMTSPEVIYHCALPANSPRGGYKWPKLEELHYKLFKEGIKG 170 Query: 174 AHDAKADVYATLALVWLIRE 193 AHDA D+ AT W ++ Sbjct: 171 AHDAMVDITATARCYWELKR 190 >gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] Length = 241 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 9/122 (7%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + + + F + L P+A+ + GIT Sbjct: 5 IVLDTETTGFDPKTGDRLIEVGCIEI-EDLLPTGR--TFHRFINPERLIPPDAIKVHGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY-DSYRWSWD 123 K E + +F + +N FD + R + W Sbjct: 62 DDKVKDAPKFH-EVVDDLMEFL---GDAPLIAHNANFDRNFIDFEIGRIGRTPPPQDRWI 117 Query: 124 NG 125 + Sbjct: 118 DT 119 >gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492] gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36] gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492] gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36] Length = 256 Score = 91.8 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + EA + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMPIPAEASAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E +R I + G+N+ RFD F R D Sbjct: 61 HGIYDADIADCP-TFKEVARNIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A+AD Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + + + + + + + + M +F + Sbjct: 158 TRATYEVLMSQLDRYPELQNDVAFLADYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 ++ V P Y ++ Sbjct: 218 VSDVLKRDPGYYSWIL 233 >gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057] gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057] Length = 256 Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + E+ + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMHIPAESSAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E +R+I + G+N+ RFD F R D Sbjct: 61 HGIYDEDIADCP-TFKEVARKIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A+AD Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + + + + + + + + M + +F + Sbjct: 158 TRATYEVLMAQLDRYGELQNDVAFLADYSSFNKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 ++ V P Y ++ Sbjct: 218 VSEVLKRDPGYYSWIL 233 >gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 232 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 14/201 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + D V +D +++ P DD +PE++ I G+ Sbjct: 35 YSVMDVETTGLNPRRDALLAIGLVEIDEGRIRMDRRWYTLVHPPDDAPINPESIRIHGLL 94 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ ++A + ++ + D + R R + Sbjct: 95 PQDVEHAPPLDA----VVPDVLRRLTGRVLVVHVADVDIGFLRQAMRRLY---------G 141 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSR-DDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R +D R + F + + +L+ LA + G+ H+A D Sbjct: 142 VDPRGPAIDTARLAWHFQRHQRLIEGLGSEQEPALQLRALAESLGLPVYPEHNAFNDALT 201 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L Sbjct: 202 TAQLFLAQVSMFEAQSTPRLR 222 >gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 235 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 53/194 (27%), Gaps = 28/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV R+ ++ + + +TGIT Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRV-RKGHIVDQFQQL---VNPLRPIPRQITTLTGIT 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + R + + P I +N+ FD + D Sbjct: 90 DAMVADLD-PIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRF---------LDYNTR 139 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D M+ A P +L DL + GI H A +D Sbjct: 140 HIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALSD 189 Query: 181 VYATLALVWLIREK 194 T +R Sbjct: 190 AIQTQQCFEWMRHY 203 >gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46] gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis NCTC 9343] gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46] gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis NCTC 9343] gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis 638R] Length = 257 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 82/257 (31%), Gaps = 30/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + E+ + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTLRINPEMPIPAESSAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + G+N+ RFD F R D Sbjct: 61 HGIYDADVADCP-TFKEVAKSIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + + + ++K G +AH A+AD Sbjct: 114 -----------IDMSKRKFVDVQVIFHKMEQRTLTAAYKF-----YCGRNLEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT ++ ++ P+ + + + + + M + +F + Sbjct: 158 TRATYEVLMAQLDRYPEELQNDMSFLADYSSYNKNVDFAGRMVYDDNGVEVFNFGKYKGQ 217 Query: 239 LIAPVA-WHPRYKDSVI 254 ++ V P Y ++ Sbjct: 218 SVSEVLKKDPGYYSWIL 234 >gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 53/184 (28%), Gaps = 26/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G D DR Q A ++ E DP V + G+T Sbjct: 29 FAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETL---VNPGAGVDPGPVEVHGLT 85 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + I + + + +N FD + R Sbjct: 86 TADLAGAP-PFRDVAATIAERLA---GRVFVAHNAAFDWAFVAVESDRAGVRL------- 134 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L MR A + D L +A +E + AHDA D Sbjct: 135 --EVLDWLCTMRFAKALALDV----------PDKSLATIAAYYAVEQLKAHDAGDDTRVA 182 Query: 185 LALV 188 ++ Sbjct: 183 AEIL 186 >gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] Length = 961 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 27/232 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET G + + D Q ++ + V+ P +TGI Sbjct: 2 KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSI---SRVYGTYVNPGIPIPPFITGLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + ++ +N+ FD + +N R Y Sbjct: 58 SDSDVADAP-SLEEMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLP------ 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +LD M + P +S++L ++ G+EH H A +D A Sbjct: 108 ---FSGRILDTMHFLKICFPSL----------SSYQLGMVSSHFGLEHDRPHQADSDALA 154 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 T + E+ +L + + D+ + F A + Sbjct: 155 TAYALLKCLEEIDELPLLTIQRLSDLFADEDSDLAWFFDGIRAEREFQAVQG 206 >gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 206 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 57/199 (28%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +I D+ET G DR + VR+ + +++ + + T Sbjct: 7 NSVIILDFETTGLSPNQGDRAIEIGAVRI-QDGIVVDTFQELM---NPGFRVSGFIEGYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ E E R F N + +N FD + Sbjct: 63 GISNAMLANAAPCE-EVMARFADFIGDHN---LVAHNASFDQRFLDAELDGINL------ 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 G + + R +Y A + KL L IE+ H A AD Sbjct: 113 -SYGGKFACSMLIARRLY-------------QDAPNHKLGGLVEYKQIENDGVFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLF 199 T L + + Sbjct: 159 SEMTAKLWLQMLDDMRSEH 177 >gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 493 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 31/179 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI D ET G + DR + V V P +TGI+ Sbjct: 6 YVIVDLETTGGHITRDRITEIGLVEVSHG--VTTRWSQL---VNPGQPIPPFIEEMTGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + + N ++ +N RFD + +N F R Sbjct: 61 DAMVAEAP-PFAELAPAL---LARLNGKLLIAHNARFDYGFLKNEFRRLGL--------- 107 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181 D L ++ P + L L +GI+ H A D Sbjct: 108 -TFTTDPLCTVKLSRRLYPQHAK----------HSLDSLIARHGIDVPPGMRHRALGDA 155 >gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 934 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%) Query: 1 MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + + + D ET G DR Q V + + I + Sbjct: 1 MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 56 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ + + + + ++ + +N+ FD + + R Y Sbjct: 57 ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 112 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +D + A+SF+L+DL+ I+H + H A Sbjct: 113 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 153 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206 +D AT L ++++ L Sbjct: 154 DSDAIATAHLFITLQQRLAHLPLITLQQM 182 >gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785] gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 320 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 28/239 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ + D ET G DR + G+RV E + + P + +P + Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLRVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI G+ E ++ +F + I+GYN NF Sbjct: 88 GIDEATIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +DV R +F P +L D I H D Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + ++ +LF + R + ++ L +V S F + ++ ++ Sbjct: 186 LDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVV 240 >gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 454 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 59/193 (30%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +VI D ET G + + A R D + ++ + P V +TGI Sbjct: 2 YVILDIETTGGKFNEEGITEIAIHRFDGH-KVVDKFISL---VNPEKEIQPFVVKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + ++ +N +FD R F R Y+ Sbjct: 58 DKMLRTAPK-FYEIAKRIVEITED---AVLVAHNAQFDYRILRTEFRRLGYNF------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L + GI + H A D AT Sbjct: 107 -------------ERKTLCTVNLSKELIPDKESYSLGKLVRSLGIPVSDRHRANGDALAT 153 Query: 185 LALVWLIREKKPK 197 L L L+ K Sbjct: 154 LQLFKLLLAKDSN 166 >gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] Length = 479 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 29/176 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ DR + A +R D Q V CKP +++ +TGI+ Sbjct: 34 VVVDLETTGGNLYQDRVTEVALLRFDGQSVCRYEWLVNPCKPIPEFV-----AQLTGISN 88 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + E E + ++ ++ +N RFD + R+ F R D Sbjct: 89 KMVKTAPLFE-EIASQLLPLLQ---GAVVVAHNSRFDYTFLRHEFRRAGIDFAA------ 138 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L ++ P+ + L + N I N H A DV Sbjct: 139 ----PALCTVQLSRRLYPEFYK----------HNLDSIIERNAIAVENRHRAMTDV 180 >gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 936 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%) Query: 1 MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + + + D ET G DR Q V + + I + Sbjct: 3 MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ + + + + ++ + +N+ FD + + R Y Sbjct: 59 ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 114 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +D + A+SF+L+DL+ I+H + H A Sbjct: 115 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 155 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206 +D AT L ++++ L Sbjct: 156 DSDAIATAHLFITLQQRLAHLPLITLQQM 184 >gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA3] Length = 584 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 18 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 73 THAMVRSAPS----LSTVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192 >gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] Length = 204 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 56/191 (29%), Gaps = 30/191 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VNGEVVDSFQQLM---NPGFRVSSFIENYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E E +F + N + +N FD + R Sbjct: 61 GITNNMLRSAPSCE-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 F+ + A S KL +L N H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQEAPSHKLGELVRYKNIDNDGVFHRALAD 156 Query: 181 VYATLALVWLI 191 T L L+ Sbjct: 157 AQMTAKLWLLM 167 >gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 244 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + + DP A+ + G+T Sbjct: 4 IILDTETTGLNPRSGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F R + D Sbjct: 61 TEFLSDKPK-FAEVADQIRDFVKGAELII---HNAPFDLGFLDAEFARLGLPPFIEHCDG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLAEAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] Length = 934 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%) Query: 1 MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + + + D ET G DR Q V + + I + Sbjct: 1 MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 56 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ + + + + ++ + +N+ FD + + R Y Sbjct: 57 ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 112 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +D + A+SF+L+DL+ I+H + H A Sbjct: 113 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 153 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206 +D AT L ++++ L Sbjct: 154 DSDAIATAHLFITLQQRLAHLPLITLQQM 182 >gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315] gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315] Length = 205 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R E ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEVVDRFQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E + F + +N FD + ++ Sbjct: 57 TGITNDMIAAAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGLLG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 M A +AF+ + A S +L L + AH A Sbjct: 107 --------------MSADHAFACTMLVARRIYPDARSHRLSSLIEMLRLPQSGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L +++ + + Sbjct: 153 DAEMAGHLWCRLQQDISRTY 172 >gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] Length = 934 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%) Query: 1 MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + + + D ET G DR Q V + + I + Sbjct: 1 MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 56 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ + + + + ++ + +N+ FD + + R Y Sbjct: 57 ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 112 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +D + A+SF+L+DL+ I+H + H A Sbjct: 113 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 153 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206 +D AT L ++++ L Sbjct: 154 DSDAIATAHLFITLQQRLAHLPLITLQQM 182 >gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus coahuilensis m4-4] Length = 194 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 28/180 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 T+ +V+ D ET G DR Q + + E +E F + + Sbjct: 3 THRYVVVDLETTGNSPKRGDRIIQLSACLI-EHGEIVEQFTSF---LNPNKTIPIFIEEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT E + + ++ + + +N+ FD + + + Y Sbjct: 59 TGITQPMVDDAPNFE-QIAPKLISMLNDS---VFVAHNVTFDLSFLQWELHAAGYK---- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ + + S S+KL DL+ + H H A +D Sbjct: 111 --TFQGPILDTVELAKICFPTSN-------------SYKLGDLSEKFNLLHERPHQADSD 155 >gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC 43183] gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC 43183] Length = 256 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + EA + Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEEASAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E +R I + G+N+ RFD F R D Sbjct: 61 HGIYDEDVAECP-TFKEVARNIANDIE--GCDLAGFNSNRFDIPVLAEEFLRADVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A+AD Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + + + + + + + + M +F + Sbjct: 158 TRATYEVLMSQLDRYPELQNDVAFLSDYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMP 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VADVLKRDPGYYSWIL 233 >gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49] Length = 205 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G L DR + A + + R + ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGQIVDRYQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT ++ + + + + +N FD + + R Sbjct: 57 TGITNDMIASAPP----AAKVMKEAAAFVGKHAVVAHNAGFDKRFWQAELGRLD------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 + A +AF+ + A S +L LA + AH A Sbjct: 107 --------------VSAEHAFACTMLVARRIYPDARSHRLSSLAEMLQLPKSGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L ++ + + Sbjct: 153 DAEMAGHLWCRLQHDIARTY 172 >gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482] gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855] gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4] gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA] gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510] gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A] gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482] gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855] gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4] gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA] gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510] gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A] Length = 258 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 27/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + ++ I Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEQSSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + + G+N+ RFD F R D Sbjct: 61 HGIYDADVADCP-TFKEVAKEIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+M+ + + + ++K G +AH A+AD Sbjct: 114 -----------IDMMKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 AT ++ ++ P+ + + Sbjct: 158 TRATYEVLKSQLDRYPEELQNDMAF 182 >gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] Length = 320 Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 28/239 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ + D ET G DR + G+RV E + + P + +P + Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLRVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI G+ E ++ +F + I+GYN NF Sbjct: 88 GIDEATIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +DV R +F P +L D I H D Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + ++ +LF + R + ++ L +V S F + ++ ++ Sbjct: 186 LDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVV 240 >gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] Length = 318 Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 64/205 (31%), Gaps = 27/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR + ++V R E ++ + +P + GIT Sbjct: 33 YTLLDIETTGLSPYRDRVIELGAIKV-RNGEIVDEYSHLVAYDKSNCVP-AFITKLNGIT 90 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K + +G+ AE QF + IIGYN NF + Sbjct: 91 EEKIINEGIPVAEAIHDFRQFI--GDDVIIGYNVNFDL----------NFIYDLAKKYHL 138 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +DV+R A+ P +L D GI V H D T Sbjct: 139 PELNNNYVDVLRLARAYYPKERH----------NRLIDCMQRAGIAQVEQHRGLDDSIDT 188 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 + + L K Sbjct: 189 K---KVYDDFHAHFTPNLLVQAQKK 210 >gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 259 Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 78/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + + + Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ESKTLRINPEMHIPEASSAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + + G+N+ RFD F R Sbjct: 61 HGIYDADVADCP-TFKEVAKSIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ F + + + S + N +AH A+AD Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCEKN---LEDAHTAEAD 157 Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ + + + + + + M + +F + Sbjct: 158 TRATYEVLKAQLDRYDELQNDIAFLADYSSYSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VAEVLKKDPGYYSWIL 233 >gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49] Length = 374 Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G R + V + + P +TGI+ Sbjct: 15 LVFVDLETTGGSSVEHRITEIGVVEIGPLG-----VSTWTSLVNPGQSIPPFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + + F + + +N FD + R F R Sbjct: 70 EAMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L +G+ H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPAARHRALADADLL 165 Query: 185 LALVWLIRE 193 + E Sbjct: 166 WQFWRHLHE 174 >gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 214 Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ VI D+ET G DR + V++ + E + + + T Sbjct: 15 DNVVILDFETTGLSPNQGDRAIEIGAVKL-QNGEVVGQFQQLM---NPGFRVSSFIEGYT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ F N + +N FD + Sbjct: 71 GISNNMLRTAP-SCDVVMNEFADFIGDAN---LVAHNASFDQRFLDAEL----------E 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180 N + M D A + KL L I H H A AD Sbjct: 117 QINRHYGGTFTCSMLIARRLYQD----------APNHKLGTLVDYKNIYHNGVFHRALAD 166 Query: 181 VYATLALVWLIREKKPKLF 199 T L ++ + + + Sbjct: 167 SEMTARLWLVMLDDIKQQY 185 >gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans] gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas arsenicoxydans] Length = 193 Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 28/198 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + D ET G ++ DR + V V+ + I+ F +TG Sbjct: 5 EKLIFIDLETTGANLINDRITEIGIVTVNADGD-IDRWSSF---VNPGRPIPSFIQDLTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + E + + + + +N RFD + + R + Sbjct: 61 ISDRMVATAPTFET-LADTVRERLEDG---LFIAHNARFDYGFLHHALARAGH------- 109 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+L ++ F L L +G+ H A AD Sbjct: 110 ---ALSIDVLCTVKLSRRFF----------PEEKRHNLDTLIARHGLVPEARHRALADAD 156 Query: 183 ATLALVWLIREKKPKLFE 200 L + P Sbjct: 157 LLWQLWEKLTASMPSEIF 174 >gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] Length = 584 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 18 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T S + + + + +N RFD + + + ++ Y Sbjct: 73 THAMVRSAPS----LSAILPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ A ++KL L+ +H A AD A Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192 >gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135] gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135] Length = 258 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 80/243 (32%), Gaps = 29/243 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + T + + + I Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPETSTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E ++ I + I G+N+ RFD F R D Sbjct: 61 HGIHDEDVADCP-TFKEVAKDIARDIE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + + + + ++K G +AH A+AD Sbjct: 114 -----------IDLTKRKFVDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT ++ + P + + +Y + + + + + + +F + Sbjct: 158 TRATYEVLKAQLDHYPDVLQNDINYLSEYSSYSKNVDFAGRIVYDDNGVEVFNFGKYKGI 217 Query: 239 LIA 241 ++ Sbjct: 218 PVS 220 >gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] Length = 930 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D ET G D+ Q A V + + +E + +T Sbjct: 4 QRFVVVDIETTGNSPKKGDKIIQIAAVVI-ENGQIVERYSKY---VNPGKAIPGFIEQLT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI V + ++ ++ +N+ FD + + Sbjct: 60 GIQQHMVDDA-VFFEDIAQEVYDLIQ---GAYFVAHNVHFDLNFLNDELKACG------K 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +++ R +Y +KL +L+ + H + H A +D Sbjct: 110 NELDVLAIDTVEISRILY-------------PELEGYKLTELSEELMLPHDHPHRADSDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L + + + Sbjct: 157 EVTAMLFLTLLHQLTHTPPNVLK 179 >gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 240 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARTGDRIIEIGCVEM-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVAHAICDFVRGAELII---HNAPFDIGFIDAEFERVGLPPL---NQH 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + ++ L L GI H H A D Sbjct: 114 CDGVIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845] gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845] Length = 284 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ DR Q + ++V ++ E +F + E + Sbjct: 5 LTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKE-ERENIF---INPEKPIPAEVTLL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + ++ + F+ GYN+ RFD F R D Sbjct: 61 TGISDADVADAP-TFKQKAKDLSDKFA--GCDFAGYNSNRFDVPMLAEEFLRAGVDFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +++ + R A + +D + K Sbjct: 118 KCRLIDAQNIYHKMERRNLAAAYKFYCGRKMEDDFEAHK 156 >gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] Length = 204 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 30/190 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + N V+ D+ET G + DR + V++ E +++ + + Sbjct: 3 LANSVVVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSSFIEG 58 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT E + QF + N + +N FD + + R Sbjct: 59 YTGITNVMLRDAP-SCDEVMAQFAQFIAGEN---LVAHNASFDKRFLDDELERVN----- 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178 F+ + + A S KL DL I++ H A Sbjct: 110 ---------------AAYSGEFACSLLVSRRLNQDAPSHKLGDLVRFKQIDNDGVFHRAL 154 Query: 179 ADVYATLALV 188 AD T L Sbjct: 155 ADAEMTAKLW 164 >gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum DJO10A] Length = 211 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV ++ + + +TGIT Sbjct: 10 YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 E R + + P I+G+N F D Sbjct: 66 DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D M+ A P +L DL + GI H A + Sbjct: 115 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 164 Query: 180 DVYATLALVWLIREK 194 D T +R Sbjct: 165 DAIQTQQCFEWMRHY 179 >gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 243 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 32/197 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G D R + V VDR+ + + + DPEA+ + GI Sbjct: 4 VVLDTETTGIDPRQGHRVIEIGAVELVDREITE-GRYQQY---LNPGRSSDPEALRVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +F+ + F + + +N FD + R + + Sbjct: 60 RDDFLADQP----DFADIVEDFLAFLGDAELIIHNAPFDLAFLNAELERVGRPALQNPVR 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181 D L R + + L L G+++ H A D Sbjct: 116 ------DTLVEARRRHPGQKN--------------DLDALCRRYGVDNSRRQQHGALLDC 155 Query: 182 YATLALVWLIREKKPKL 198 + + + + Sbjct: 156 EILAEVYLRMSGGQLGM 172 >gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA] gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA] Length = 260 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 27/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + ++ I Sbjct: 7 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEQSSAI 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + + G+N+ RFD F R D Sbjct: 63 HGIYDADVADCP-TFKEVAKEIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+M+ + + + ++K G +AH A+AD Sbjct: 116 -----------IDMMKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 AT ++ ++ P+ + + Sbjct: 160 TRATYEVLKSQLDRYPEELQNDMAF 184 >gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2] gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2] Length = 461 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D D Q VR+ I S E F ++ + GI Sbjct: 272 TFVVFDSETTGLDPQKDDVVQLGAVRI-VNGRIIAS-ETFEALVNPGRPIPAQSTKVHGI 329 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 + +F+ F ++ +N FD + Sbjct: 330 SDDMVAGAP----DFTVVRDNFQRYAANAVLVAHNAPFDMAFLNR 370 >gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 459 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 29/189 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M N + I D ET G + + R + A + D + ++ E + P Sbjct: 1 MKNQEYAIVDIETTGGNASGSRITEIAIIIHDGK-NVLDRYETL---VNPEQDIPPSIFG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI + + + S ++ + + I +N+ FD + + + + Sbjct: 57 LTGINNEMVANAP-IFDDISEKVLEMLTDR---IFVAHNVNFDYSFVHHQLEQAGFKWSA 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L +RA G S+ L +L + I N H A Sbjct: 113 KK----------LCTVRAARKI----------KPGLGSYSLGNLCNSLNISLENRHRAGG 152 Query: 180 DVYATLALV 188 D AT L Sbjct: 153 DADATAILF 161 >gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786] Length = 408 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 47/195 (24%), Gaps = 29/195 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G R + V V + + P +TGIT Sbjct: 15 LAFVDLETTGGSAVEHRITEIGVVVVSA-----DHVSTWTTLVNPRQAIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F+ F + + +N FD + R F R + Sbjct: 70 DDMVRGAPT----FADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRVLF----------PRESRHGLDALIARHALTPSARHRALADADLI 165 Query: 185 LALVWLIREKKPKLF 199 + + P Sbjct: 166 WQFWQKLHDAIPGEH 180 >gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147] Length = 405 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 47/195 (24%), Gaps = 29/195 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G R + V V + + P +TGIT Sbjct: 15 LAFVDLETTGGSAVEHRITEIGVVVVSA-----DHVSTWTTLVNPRQAIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F+ F + + +N FD + R F R + Sbjct: 70 DDMVRGAPT----FADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRVLF----------PRESRHGLDALIARHALTPSARHRALADADLI 165 Query: 185 LALVWLIREKKPKLF 199 + + P Sbjct: 166 WQFWQKLHDAIPGEH 180 >gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] Length = 929 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 28/178 (15%) Query: 8 YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G V DR Q V V + + I E K V +TGI + Sbjct: 2 VDLETTGTSVNHGDRIIQVGCVLV-QDGQVINRFET---KINPRERIPRAVVQLTGIQER 57 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + E + + I+ + I +N+ FD + R Y Sbjct: 58 DVRKAPLFE-DVAGTIYSLLT---GTIFVAHNVNFDFPFLNAELERAGYPPLSI------ 107 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A SF+L+DL + IEH + H A +D AT Sbjct: 108 KAIDTVTLSQI-------------LLPTAKSFRLRDLTSSLQIEHDHPHSAVSDAEAT 152 >gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 729 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 54/191 (28%), Gaps = 31/191 (16%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFI 60 ++V++D ET G A D AGVR+ ++ E ++ Sbjct: 535 NYVVFDTETTGLSPAEGDEIVSIAGVRM-VNGRLLDGERFEQL---VNPGRTIPRSSILF 590 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI +E R H F ++ +N FD + R R Sbjct: 591 HGIHDTTVADKPRIET-VLPRFHTFV---GDSVLVAHNAAFDMKFIRLKERRCG------ 640 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +R + D L+ +A G+E H A D Sbjct: 641 --------------VRFDNPVLDTLLLSVFLHDHTADHTLEAIAARLGVEVTAQHTAWGD 686 Query: 181 VYATLALVWLI 191 T + + Sbjct: 687 ALVTARVFACL 697 >gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA] gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA] Length = 872 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 26/209 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ +++D E+ G DV D Q A +++++ E I+S E F + + Sbjct: 494 QDNIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFLKNKKSVES----SFKVH 549 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + G + + + F +I +N+++D + YRN D Sbjct: 550 GFSDEFLNEKGEDKKKVLKEFIDF---SKGAVIVGHNVQYDINILNSELYRNNLDG---- 602 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D LD+ R Y ++KL+ L+ ++ +HDA D+ Sbjct: 603 -TKFKAFYDTLDIYRRFYT-------------SLPNYKLETLSKIFETKNKPSHDAMDDI 648 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209 AT L+ I E +Y +K+ Sbjct: 649 LATSDLLVRAINENLIPTSMQRINYMSKH 677 >gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] Length = 235 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 35/214 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G D DR + V E ++ F + E V + Sbjct: 4 IIFDTETTGLDKEKDRIIEIGCV------EMVDRYLTGRRFHVYLNPQGVIIPDEVVAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + ++ + +F N + +N FD + R Sbjct: 58 GLTNERLKNE-KSFSDIADEFLEFI---NGATMIAHNASFDIGFLNAELARANKPLISVD 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + +P+ L L GI++ + H A Sbjct: 114 N-----ILDTLAMARRKFPMAPN--------------SLDVLCKRFGIDNSHRVFHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + K + + + + Sbjct: 155 DAEILADIYIELIGGKQGVLVFGNNGSVHEESEN 188 >gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 320 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 28/239 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ + D ET G DR + G++V E + + P + +P + Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI G+ E ++ +F + I+GYN NF Sbjct: 88 GIDEATIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +DV R +F P +L D I H D Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + ++ +LF + R + ++ L +V S F + ++ ++ Sbjct: 186 LDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVV 240 >gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris vibrioformis DSM 265] gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium phaeovibrioides DSM 265] Length = 194 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 21/200 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +D ET G D + QFAG + +ES E+ +P + D EA+ +T Sbjct: 1 MKKVLWFDLETTGIDPERNGIIQFAG-LAEIDGAVVESFEIKM-QPHEGAQIDDEALEVT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRNF 114 G T + AE R+I F + + N+ FD + +F R Sbjct: 59 GFTREAIPTF-TPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYNVHFDLEFLSRMFKR-- 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +D Y D ++ + + +LQ G++ NA Sbjct: 116 FDQYGLGSFTNWRMLDPQPILNLMDY---------MGRISLPNHRLQTACDHFGVKLENA 166 Query: 175 HDAKADVYATLALVWLIREK 194 HDA AD+ AT AL+ + E Sbjct: 167 HDALADITATRALMQRLLEH 186 >gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900] Length = 179 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 28/197 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D ET G +V D+ + A ++ D K+E + + DP+A Sbjct: 1 MIPYILGVDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQ---RIDPERNIDPKAQA 57 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ + + + + + + ++ +N FD + R Sbjct: 58 VHGISYSDLIGCPK-FVDIAEEVASIVNHAS--LLVAHNFAFDGPFIATELKRAGMTPK- 113 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + + + +W + D KL DL + G+E+ AH A Sbjct: 114 ----------------KVSSFCTMEYGRWATFDGKYP--KLADLCFSLGVEYDASAAHAA 155 Query: 178 KADVYATLALVWLIREK 194 DV + + RE+ Sbjct: 156 SYDVDVMMQCFFKARER 172 >gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18] gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18] Length = 284 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ DR Q + ++V ++ E +F + E + Sbjct: 5 LTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKE-ERENIF---INPEKPIPAEVTLL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + ++ + F+ GYN+ RFD F R D Sbjct: 61 TGISDADVADAP-TFKQKAKDLSDKFA--GCDFAGYNSNRFDVPMLAEEFLRAGVDFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +++ + R A + +D + K Sbjct: 118 KCRLIDAQNIYHKMERRNLAAAYKFYCGRKMEDDFEAHK 156 >gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21] gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21] Length = 463 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 72/276 (26%), Gaps = 28/276 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G A + A D E +TGI+ Sbjct: 3 YAIVDIETTGGHAAGHGITEIAICIHDGAG-ICHRYETL---VNPQAHIPLHISALTGIS 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + ++Q I +N+ FD + ++ Y Sbjct: 59 NEMVADAP-TFAEIAATVYQLLE---GRIFVAHNVNFDYSFIKHHLAFCGYSWNA----- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L I N H A D AT Sbjct: 110 -----PKLCTVRLSRKVL----------PGFASYSLGKLCQQLNISITNRHRAGGDATAT 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L L+ EK P + + +K Q + + + + + V Sbjct: 155 GILFSLLLEKGPDAIQAMLKKASKEQALPPNLPKENFERLPQTPGVYYFKDQKGKVVYVG 214 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS 280 K V + + + F S Sbjct: 215 KAKNIKKRVSAHFSGQNPNPQRQNFMRSIYDIDFVS 250 >gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 190 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 72/201 (35%), Gaps = 27/201 (13%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++ +D ET G + R Q A + D + +ES +V KP +P Sbjct: 2 YLFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDV-IVKPEGFTIP- 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 PEA + GIT A G E + + + +NI FD+ F R Sbjct: 60 PEASRVHGITTLVAREKGEPLQEVMEQFARKIDE--ATALVGHNISFDECIVGAEFERLR 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVN 173 L S D + P + G S +L +L + G N Sbjct: 118 M-----------MTTLFLKPKYCTMKLSTDYCKLPGK-KGFKSPRLAELHQVLFGSGFDN 165 Query: 174 AHDAKADVYATLALVWLIREK 194 AH+A ADV AT W ++ + Sbjct: 166 AHNALADVEATARCFWELKNR 186 >gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] Length = 241 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 64/200 (32%), Gaps = 28/200 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 TN V+ D ET G + R + V V+R+ + + + D A+ Sbjct: 7 TNRLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGK-RFHTY---INPERIIDDGAIE 62 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT Q A+ + F + +N FD + F R +S Sbjct: 63 VHGITNQFLEDKP-CFADVVKDFIAFIQDAE---LVIHNAPFDVGFINYEFSR--LNSQT 116 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 + + + +D L R + + L L GI+ H + H A Sbjct: 117 GTVTDYSKVFDTLTYARKKHPGQRN--------------SLDALCKRYGIDNSHRDLHGA 162 Query: 178 KADVYATLALVWLIREKKPK 197 D + L+ + Sbjct: 163 LLDAEILADVFLLMTGGQSS 182 >gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] Length = 203 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 31/196 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G DR + A V + ++ + Sbjct: 1 MPLT-AVIDFETTGISPGCGDRATEVAIVLL-EGGRVVDRFQSLM---NAGVRIPSFITQ 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + ++ + Q + +N FD + + R Sbjct: 56 LTGITNAMVAGAP----DAAQVMTQASRFVGDAPLVAHNAAFDRKFWQAELDRAGL---- 107 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 L + R +Y A + KL L +G+ AH A Sbjct: 108 ---AAPQPFICTLLLSRRLY-------------PQAPNHKLGSLVDFHGLPRTGQAHRAL 151 Query: 179 ADVYATLALVWLIREK 194 AD + L+ I+ Sbjct: 152 ADAEMAVELLGQIQHD 167 >gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] Length = 458 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 102/354 (28%), Gaps = 39/354 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + + Q + ++ P +TGI Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYKYNGQ-KVVDQFSSL---INPQKEIQPFVEKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + CI+ +N FD + F R + Sbjct: 58 SKMLRSAPK-FYEVAKRIVELTED---CILVAHNASFDYRILQTEFRRLGFPF------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++ L L + GI + H A D T Sbjct: 107 -------------ERKSICTVELSQKLLPDEPAYSLGKLVRSLGIPFSDQHRAHGDAKVT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L L L+ EK + KN + N+ + ++ I + Sbjct: 154 LKLFELLLEKDVQKTILKEHINTKNPNKVPSKYLNLIDKLPSEMGVYYLHNSENEIIYIG 213 Query: 245 WHPRYKDSVIGC---NLSGDMRVFQDLDSVQLA------KRLFTSHDELKGLVPVPIKEV 295 K V+ + + +L + + L +E+K + P + + Sbjct: 214 KSNNIKKRVLSHLTGTQRKSIAIQAELSHITFSLTGGELVTLLKEQNEIKNIAPKFNRAM 273 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349 P+ + ID E + + ++ + E + + + + + Sbjct: 274 RFRIFPMGIRIDNT--ETYPKLILEQVKLEEQYISVFKNQKVAKTVLFRWADDF 325 >gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3] gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3] Length = 210 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 39/230 (16%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G DR + VR+ E + + + T Sbjct: 7 DTIVVLDFETTGLSPNQGDRAIEIGAVRI-VNGEVTDQFQALM---NPGIRVNSFIEDYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + F N + +N FD + N D + Sbjct: 63 GITNHMLKEA-ASCSDVMAQFCDFIGDDN---LLAHNASFDKKFLDNE-----LDEISRT 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + F+ + + + S L +L E H A D Sbjct: 114 YQGE---------------FTCSLLVSRRINIDSQSHSLGNLVKQLNLSEEGGFHRALFD 158 Query: 181 VYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLIDIQNMT 221 T L + + + + KN++ K++ + Sbjct: 159 AQMTAKLWLHMLDNISQTYGIKRPLFSLMQQIANTPKNKVPKILQNYAIQ 208 >gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus polymyxa E681] gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative [Paenibacillus polymyxa E681] Length = 955 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 27/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET G A D Q +D I V+ P +TGI Sbjct: 2 KFAVLDFETTGTQSA-DDIIQVGLAIIDHD-NSISR--VYGSYVNPGRSIPPFITGLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E E + ++ +N+ FD + +N R Y + Sbjct: 58 TDDDVKDAPALE-EMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLPF----- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +D ++ ++ +S++L ++ + H H A +D A Sbjct: 109 -SGRILDTMDFLKIMF-------------PSLSSYQLGFVSSEFELAHDRPHQADSDALA 154 Query: 184 TLALVWLI 191 T + Sbjct: 155 TAEVFLKC 162 >gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4] gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri JV-V03] gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4] gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri JV-V03] Length = 320 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 28/239 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ + D ET G DR + G++V E + + P ++ +P + Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDNNKVP-AFITKLN 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI G+ E ++ +F + I+GYN NF Sbjct: 88 GIDEAAIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +DV R +F +L D I H D Sbjct: 136 YHLTVLNNDYVDVYRLARSFY----------PQERHNRLLDCMHRMNIAENQEHRGLDDC 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + ++ KLF+ + R + ++ L +V + F + + ++ Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEAVKTLDLTSEWPDIVKQTQAFRSPFIHKKVV 240 >gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 638 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 28/182 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A + V E+ P P V + G+T ++ Sbjct: 23 VDVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTL---LNPGCDPGP--VKVHGLTVER 77 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + RI ++ +N +FD + + F R +W + Sbjct: 78 LQGAP-TFDQVAGRIGAMLQDR---VLVAHNAQFDYDFLAHEFAR------ARTWLPVSQ 127 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + D KL LA GI AHDA D + Sbjct: 128 RLCTLALNRQV-------------DPPTGDMKLGTLAAHYGIPQQRAHDALDDTRVLAGI 174 Query: 188 VW 189 + Sbjct: 175 LR 176 >gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH] Length = 379 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 47/188 (25%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G R + V V+ + P +TGIT Sbjct: 15 LAFVDLETTGGSAVEHRITEIGVVVVNAN-----HVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + + + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAPALLERL---DGKLFVAHNASFDRGFLRAEFERAGVAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALVPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4] gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264] Length = 379 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 47/188 (25%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G R + V V+ + P +TGIT Sbjct: 15 LAFVDLETTGGSAVEHRITEIGVVVVNAN-----HVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + + + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAPALLERL---DGKLFVAHNASFDRGFLRAEFERAGVAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALVPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] Length = 204 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 55/191 (28%), Gaps = 30/191 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQQLM---NPGFRVSSFIENYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E E +F N + +N FD + R Sbjct: 61 GITNNMLRTAPSCE-EVMASFSEFIDGEN---LIAHNASFDKRFLDAELERINCG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 F+ + A S KL +L N H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 156 Query: 181 VYATLALVWLI 191 T L L+ Sbjct: 157 AQMTAKLWLLM 167 >gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633] gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] Length = 214 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 55/191 (28%), Gaps = 30/191 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E ++S + + T Sbjct: 15 NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQQLM---NPGFRVSSFIENYT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E E +F N + +N FD + R Sbjct: 71 GITNNMLRTAPSCE-EVMASFSEFIDGEN---LIAHNASFDKRFLDAELERINCG----- 121 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 F+ + A S KL +L N H A AD Sbjct: 122 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 166 Query: 181 VYATLALVWLI 191 T L L+ Sbjct: 167 AQMTAKLWLLM 177 >gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula palustris E1-9c] gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula palustris E1-9c] Length = 193 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 61/205 (29%), Gaps = 27/205 (13%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++ +D ET G R + V D + IE +P +P Sbjct: 2 YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEE-AGLLVRPDGFSVP- 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 E+ I GIT ++A G +E R +I + + FD R Sbjct: 60 AESTAIHGITTEQATEQGSAISEVLARFLLALEQSE--LICGHQVSFDHRVVGAELIRAG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVN 173 D LD R + + + L L L Sbjct: 118 MP------------VDQLDKPRFCTMEASKTLNRSATGHSPHPLSLSALYLHLFDEPFAG 165 Query: 174 AHDAKADVYATLALVWLIREKKPKL 198 AH A AD A A ++IR+ + Sbjct: 166 AHRALADAKACAACFFVIRDLQNSE 190 >gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 217 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 30/192 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D+ET G DR + V+V+ ++ E + TGI Sbjct: 10 LIVLDFETSGMAPQRGDRAIEVGAVKVN-DGRIVDHFESLM---NPGFRVSSFIEEFTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + R E E + +F + +N FD + ++ F R Sbjct: 66 TNDELRRAPRCE-EVMHQFSEFI---GGAPLVAHNASFDQRFLKSEFARIG--------- 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVY 182 M A + KL L A N H A AD Sbjct: 113 -ECKLLRFGCSMLVARRLY----------PEAPNHKLATLVAYKNLPSQGVFHRALADAE 161 Query: 183 ATLALVWLIREK 194 T L + + Sbjct: 162 MTAHLWMEMERE 173 >gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198] gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae 12198] Length = 247 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 55/193 (28%), Gaps = 29/193 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D ET G + ++ E I++ E + +TGI Sbjct: 67 FCFVDIETTGSKPNHSSIIEIGAIKY-HGGEIIDTFETLVFSQS----VPENITELTGID 121 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E +R +F + +N+ FD + + R Sbjct: 122 AGMLADAP-SEREVLQRFRKFL---GNSVFVAHNVVFDYGFISDRLLRYNEPYLLN---- 173 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +++ R R + + L L GI H A +D + Sbjct: 174 --PRLCTVELAR--------------RGILSARYSLGHLNAFLGIGIDKQHRALSDAFIC 217 Query: 185 LALVWLIREKKPK 197 L + + + P Sbjct: 218 LKVFEIAQLTLPN 230 >gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] Length = 361 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 91/334 (27%), Gaps = 33/334 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D ++ + V +TGI Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKFDGH-SVVDQFISL---VNPEKEIQQFVVRLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + C + +N FD F R YD R + Sbjct: 58 NKMLRSAPK-FYEIAKRIIEITKD---CTLVAHNTTFDYRILSTEFDRLGYDFNRNT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L A GI + H A D AT Sbjct: 111 -----------------LCTVELSKQLILDQPSYSLGKLTKALGIPMTDRHRASGDALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + L L+ EK ++ +Q + +Q + V + + Sbjct: 154 VQLFKLLLEKDSTKTIIQNFVKHHDQRFEKERLQKLIASVPKYLGVFYIHDKNGKVLYLG 213 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV----HLNKC 300 V L + + L ++ + +EL + ++ N Sbjct: 214 RGKNINAEVNKLFLK-ETKRALKLQDRAISITYEKTGNELFSRLKYYLQLETLSPKYNIK 272 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ 334 P + + E+ +L + Sbjct: 273 KKRKPFLHNFNNDNFIILDKGRETEEHALILIEN 306 >gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease [Streptococcus agalactiae A909] gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111] gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515] gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family [Streptococcus agalactiae A909] gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515] gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111] Length = 604 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 29/228 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ +D ET G + DR + V + ++S E + I Sbjct: 50 KNRFIAFDIETTGLNSQQDRIVEVGAVLF-ENGKVVDSYESL---VNAKVNISADVTRIN 105 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 IT + E + + F + +N +FD + N R Sbjct: 106 NITNRMIKNAP-SENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLG----- 159 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ D L + R G ++K +A +++ N+H AK+ Sbjct: 160 --YNGEIKYLDTLSLSR-------------KNVKGLRNYKQNTVAEYFNLQNKNSHRAKS 204 Query: 180 DVYAT--LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 D + + K + NK +L + ++ Sbjct: 205 DAIICGNILTKLFFIIENQKSRKSFSSKNNKISPEELEVCAVIQNIIF 252 >gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 552 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 54/203 (26%), Gaps = 25/203 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+ R + + + +TGI Sbjct: 21 TFVVVDLETTGGAPGAQALTEIGAVKA-RGGQVLTDFFTL---VNPGVAIPAQITMLTGI 76 Query: 64 TPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 T E + ++ +N RFD + R + Sbjct: 77 TNAMVAGAPGVRTCVEAFLDWADLLA--GDVVLVAHNARFDVGHLRGAAAALGLEWPE-- 132 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + KL LA G + H A D Sbjct: 133 ----PRVLDTLALARKAWT-----------RSEVPNHKLGTLAAFVGSQTRPTHRALDDA 177 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 AT+ ++ E L + Sbjct: 178 CATVDVLHAALEVMAPLGVTHLE 200 >gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 462 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 53/195 (27%), Gaps = 29/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 D ET G +DR + V VD + +TG Sbjct: 8 PRLAFVDLETTGATAVIDRITEVGIVEVDEDG--VRHWSSL---VNPHRHIPEFIEGLTG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ E + IHQ I +N RFD + +N F R D Sbjct: 63 ISNAMVADAPG-FDELAAEIHQRLE---GRIFLAHNARFDHGFLKNEFKRVGID------ 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +L ++ P+ + L LA + ++ H A D Sbjct: 113 ----FRPTVLCTVKLSRKLYPEFAK----------HNLDTLAERHQLQVTERHRALGDAQ 158 Query: 183 ATLALVWLIREKKPK 197 I P Sbjct: 159 LIWQFWETIHTTFPH 173 >gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] Length = 204 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 56/191 (29%), Gaps = 30/191 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQRLM---NPGFRVSSFIENYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E E +F + N + +N FD + R Sbjct: 61 GITNNMLRSAPSCE-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 F+ + A S KL +L N H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 156 Query: 181 VYATLALVWLI 191 T L L+ Sbjct: 157 AQMTAKLWLLM 167 >gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured organism HF70_19B12] Length = 270 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 26/197 (13%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + DR Q+A + D + E+ ++ + GI+ + Sbjct: 12 FDTETTGLNPRKDRILQYAFIGRDVDGSSVCQVEL----IDPGIKIPEASMNVHGISNED 67 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 G S I + I+G+N FD + F R + + + Sbjct: 68 VTGRG-SFGMHSNDIAELID--GAIIVGHNINAFDWRFIEFEFMRVG-----EAVPSPYA 119 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L++ R + L L GI AH A AD ATL L Sbjct: 120 LVDTLELARGLRI--------------PGRHTLGHLCKRYGIGLDRAHSADADAAATLIL 165 Query: 188 VWLIREKKPKLFEYLYD 204 +W + E + E + Sbjct: 166 LWKMIEGNQSILEDGLE 182 >gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 1442 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 53/387 (13%), Positives = 112/387 (28%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I + F N ++ +N I FD + + + Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L + RAI F S +L + +++ + AH A D Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADAFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + I+ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIIQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ L + Y Sbjct: 679 DFITLPSIGSQKH---LVYVKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1] gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus radiodurans R1] Length = 197 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 29/192 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFC--KPADDYLPDP-EAVFIT 61 V++D ET G A + VR V Q ++ E +P L P +A + Sbjct: 24 VVFDLETTGFSPASAAIVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPWQAQRVH 83 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + R ++ + FF + + +N+ FD + R R Sbjct: 84 GISDEMVRRAPAIK----DVLPDFFDFVDGSAVVAHNVSFDGGFMRAGAERLGLSW---- 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKA 179 + + R + + L LA G+E H + Sbjct: 136 --APERELCTMQLSRRAF-------------PRERTHNLTVLAERLGLEFAPGGRHRSYG 180 Query: 180 DVYATLALVWLI 191 DV T + Sbjct: 181 DVQVTAQAYLRL 192 >gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 200 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 80/217 (36%), Gaps = 32/217 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +F + D ET GR + + + ++ R ++++++ D P V +TG Sbjct: 13 PNFTVIDLETTGRSNKFEDITELSAIKY-RNYKQVDAFSTL---VKPDNSILPFVVELTG 68 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + ++ F T +I +N+ FD YD+Y + Sbjct: 69 ITEEMVSDAPKID-QVIKQFVDFI---GTDVILGHNVMFDYGLV--------YDAYLATV 116 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D +D +R + D + + KL+ L +E + H D Sbjct: 117 GLRMHN-DYVDTLRVSRLLNKD----------SKNHKLETLCAYFDVERLVGHRGSEDCL 165 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 T + +++K + K++ K+ ++ Sbjct: 166 QTAEVYIKMKDKYKR-----LRQIQKDKAPKVYPVEK 197 >gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 1442 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 114/387 (29%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I + F+ N ++ +N I FD + + + Sbjct: 465 SQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L ++RAI F S +L + +++ + AH A D Sbjct: 517 -KNPSIDTLMILRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ + Y Sbjct: 679 DFITLPSIGSQKH---LVYAQKITLENVQKAFKKLVSLALESNKPIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] Length = 1450 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 27/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+YD ET G + + + V++ + ++ V +T I Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAVKIVEK-RIVDRFSQL---INPGQSIPQNIVDVTNI 478 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E E +F I+ +N FD Y + + Y + Sbjct: 479 TDSMVQNEPKLE-EVLPNFLEFIR---GSILVAHNADFDIGYLKQQCKKYGYSDF----- 529 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + + +Y F L L G+ N H A D A Sbjct: 530 -NPAFIDTLQMAKDLY-------------PELKQFGLGPLNKKLGLYLENHHRAVDDCQA 575 Query: 184 TLALVWLI 191 T + + Sbjct: 576 TGNMFLIF 583 >gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54] Length = 240 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D A R + V ++ + D DPEA+ + G+T Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCV---ELVNRMATGNNLHIYLNPDRDSDPEALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +F + +N FD + + Sbjct: 61 TEFLSDKPR-FAEVADEFVKFIQGAE---LIAHNAAFDVKFFNAELAKTGRGPIT----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 A D + L L GI H H A D Sbjct: 112 ------------EYCATVTDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQ 159 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 160 LLAEVWLAMTRGQD 173 >gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 232 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 70/252 (27%), Gaps = 32/252 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + + + F + L +P+A+ + GIT Sbjct: 4 IVLDTETTGIDPKKGHRLIEVGCIEI-EDLLPTGK--TFHHYFNPERLIEPDAIRVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ ++ F I +N FD + R D + Sbjct: 61 DEMVADKPK-FADLAQAFIDFV---GDAPIIAHNASFDRGFINMELERLGLDP-----TD 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L++ R + + L L I H A D Sbjct: 112 PDRWVDTLELARYKFPGMAN--------------SLDALCKRYNISLAERDKHGALLDAR 157 Query: 183 ATLALVWLIREKKPKLFE---YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + K + + + + ++R + Q PL A Sbjct: 158 LLAGVYLELSGGKERGLDLKMHGMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFC 217 Query: 240 IAPVAWHPRYKD 251 + + + Sbjct: 218 LKYLKDQNMWGY 229 >gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] Length = 257 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 27/207 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G DV+ DR + + ++V + E P + I Sbjct: 5 LTRPICFFDLETTGTDVSRDRIVEISILKVWPNGNR----ESKTYLVNPTIPIPPASTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ ++ + E +++IH + + GYN+ RFD R D Sbjct: 61 HGISDERVAQAP-TFKELAKQIHAMIKDSD--LAGYNSDRFDIPLLAEELLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +DL + + ++ + + ++L NAH A AD Sbjct: 114 --------FDLKNRVTVDVQTIFHKMEQRTLSAAYKFYCKKEL--------DNAHTAAAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 AT ++ + + Sbjct: 158 TEATYEILKAQLDTYSDTLPNDIKQLS 184 >gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 215 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 18/192 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVD---RQWEKIES-TEVFFCKPADDYLPDPE 56 + FV +D ET G D + V+ + + F + L E Sbjct: 4 LPPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPAE 63 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A + IT + E ++ F I+ +N FD + R + +N Sbjct: 64 ATNVNHITDKMVENAP-PVGEALKQFTAF--CGPGSILLAHNANFDASFLRTAYEQNPQF 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + ++D + P+ K ++++ + H Sbjct: 121 TPGNP---------VVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTI--DEEKMHR 169 Query: 177 AKADVYATLALV 188 + D + + Sbjct: 170 SVYDCEMLMEVF 181 >gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 454 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 66/213 (30%), Gaps = 30/213 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A R D E ++ + P V +TGI Sbjct: 2 YAIVDIETTGGKYNEEGITEIAIYRFDGH-EVVDQFISL---VNPEREIQPFVVNLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + CII +N FD + F R ++ Sbjct: 58 SRMLRDAPK-FYEVAKRIVEITED---CIIVAHNASFDYRILQLEFKRLGFE-------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+KL L A GI + H A D AT Sbjct: 106 ------------YKRKSLCTVELSKKLIPEMESYKLGKLVRALGIPMSDRHRASGDALAT 153 Query: 185 LALVWLIREKK--PKLFEYLYDYRNKNQLRKLI 215 + L L+ +K + + K ++ + Sbjct: 154 VKLFQLLLDKDSEKNIIQQAVKTEIKKKVATRL 186 >gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773] Length = 801 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 65/203 (32%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D ET G+ VA R Q + + ++ E F D +T Sbjct: 5 KTFVVVDLETTGQSVARGGRIIQIGMTFI-KNRRIVDHFESF---VNPGQPIDRNIQQLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ + E E + ++ +NI FD Y + R + Sbjct: 61 HISEKDVRDAPYFE-EIVPVLRNMLQD---TVLIAHNINFDYPYLNDELARTGFPVL--- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N D + + + A ++L DL I NAH A AD Sbjct: 114 ---NNPAIDTVQLAQI-------------LLPTAPGYRLLDLTTFLNITLNNAHRANADA 157 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 AT L + +K +L + Sbjct: 158 QATALLFLKLWQKAEQLPVIVLQ 180 >gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 208 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N ++ D+ET G DR + V++ + +++ + + T Sbjct: 7 NSVIVLDFETTGLSPNQGDRAIEIGAVKL-QDGIVVDTFQELM---NPGFRVSGFIEGYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E + F N + +N FD + D + Sbjct: 63 GITNAMLNSAP-PCNEVMAQFAGFIGNDN---LVAHNASFDKRFLDAE-----LDGIGRT 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 + G + + R +Y A + KL L IE+ H A AD Sbjct: 114 Y--GGEFACSMLIARRLY-------------QAAPNHKLGGLVEYKQIENDGVFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L + E ++ Sbjct: 159 SEVTAKLWLKMLEDMQDDYQIA 180 >gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus] gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus TK-6] Length = 191 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 55/188 (29%), Gaps = 27/188 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + FV D ET G D + A VRV + YL V + Sbjct: 6 LESTFVSIDIETTGFDEESSDIIEIACVRV-EGCIITDRFSTL---VNPGYLLPDRIVKL 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + E +F ++ I+G++ F D Sbjct: 62 TGITNAMIVGKPNI-YEVLPHFLRFV--GDSIIVGHHV----------EKDMAFIDKAYR 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + PD + L+DLA I + H A D Sbjct: 109 VLYGKKFKHPHICTLNLARNILPDL----------KRYSLKDLADHFNIRYRRLHRALDD 158 Query: 181 VYATLALV 188 T L Sbjct: 159 AETTAYLF 166 >gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC 33323] gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1] gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus gasseri ATCC 33323] gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1] Length = 320 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 87/271 (32%), Gaps = 29/271 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ + D ET G DR + G++V E + + P + +P + Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDSNKVPT-FITKLN 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI G+ E ++ +F + I+GYN NF Sbjct: 88 GIDEAAIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +DV R +F +L D I H D Sbjct: 136 YHLTVLNNDYVDVYRLARSFY----------PQERHNRLLDCMHRMNIAENQEHRGLDDC 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240 T + ++ KLF+ + R + ++ L +V + F + +I Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEAVKTLDLTSEWPDIVKQTQAFHSPFIHKKVVI 241 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271 A Y+ + + NL G ++ LD+ Sbjct: 242 AGDLDLDEYELTNVVKNLGGFIQEEVGLDTD 272 >gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 260 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 77/255 (30%), Gaps = 29/255 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++A DR + + ++V ++ E + EA I Sbjct: 5 LANPIVFFDLETTGINIAKDRIVEISVLKVYPNGKE----EQKTIRVNPGMHIPEEASAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + +R + + + GYN+ RFD F R Sbjct: 61 HGIYDEDVKDAPM-FKHIARELAHYIE--GCDLGGYNSNRFDIPLLAEEFLRA------- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D + F + + S +AH A AD Sbjct: 111 ----------EVDFDMSKRKFVDVQTIFHKMEQRTLSAAYHFYCDKC---LEDAHTAAAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNTA 238 AT ++ ++ + E D+ +K + + +F ++ Sbjct: 158 TMATYEVLMAQLDRYGEKLENNIDFLSKFSTQNKNVDFAGFIIYDDKGVEVFNFGKNKGV 217 Query: 239 LIAPVAWHPRYKDSV 253 + V + Sbjct: 218 PVEKVLKEQQGYYDW 232 >gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 244 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + + DP A+ + G+T Sbjct: 4 IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVVDQIRDFVKDAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 244 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + + DP A+ + G+T Sbjct: 4 IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVVDQIRDFVKDAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] Length = 469 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 49/190 (25%), Gaps = 28/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D Q +RV + + + I Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLV--NPGRAIPASSTAVHRI 332 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +F S ++ +N FD + + Sbjct: 333 TDAMVKDAP----DMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAPKIGMK------- 381 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181 +LD + L +LA GIE + H A D Sbjct: 382 ---FDHPVLDTVLLSAVLF----------GITEGHTLDELAKRLGIELLDKHRHTAIGDA 428 Query: 182 YATLALVWLI 191 AT + + Sbjct: 429 IATRDIFLRM 438 >gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273] gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273] Length = 197 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 21/211 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +D ET G D QFAG + + ES E+ +P + + + EA+ ++ Sbjct: 1 MKKVLWFDLETTGIDPDRHGIIQFAG-LAEIEGVVAESFEIKM-QPHEGAMIEDEALAVS 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQF-------FSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + ++ AE + I F F + N+RFD + +F R Sbjct: 59 GFSREQIASF-TPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRR-- 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 YD Y D ++ + + KLQ + G+ NA Sbjct: 116 YDQYGLGSFINWRSLDPQPILNIMEY---------MGRLSLPNHKLQTVCEHLGVRLENA 166 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDY 205 HDA +D+ AT L+ L+ E Sbjct: 167 HDALSDIKATRELMELLMEHVSIAPFTGLRT 197 >gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 227 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 52/191 (27%), Gaps = 21/191 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R + V +D + + A + GI+ +K Sbjct: 12 FDLETTGVDTNTARIVTASVVLLDAEGNVV---NNREWLVDPGVEIPEAAAAVHGISTEK 68 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A +G + I + I N +D + R + + Sbjct: 69 ARAEGAPAKQSVEEILNLLKFASEQAPIVAFNASYDFSVLYSEAVRYDLEPFFPGNVIDP 128 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 D L G+ NAH + AD A + Sbjct: 129 FIIDKQ-----------------VDRFRKGKRTLAAACEFYGVVLENAHTSLADAVACVE 171 Query: 187 LVWLIREKKPK 197 + + E+ P+ Sbjct: 172 VARQLGERYPQ 182 >gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp. CB0101] Length = 304 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 68/234 (29%), Gaps = 33/234 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVF 59 +I D ET G D DR + V D + S C+ A Sbjct: 72 PQRLLILDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLPCEQNP-------AQA 124 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P + + + + + + ++ +N FD + Sbjct: 125 VNGIDP-RLTQQPQPWQQGLQWFEALLAASD--VVVAHNAAFDRQWFG------------ 169 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L + + S + I+WP+ ++ ++DLALA + AH A Sbjct: 170 ---------IAPLPAIDKPWLCSMEDIRWPADRHLRSNPSVRDLALAYSVPVWAAHRALT 220 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 D + + +P L + L R + + Sbjct: 221 DCIYLAQVFERCSDLEPLLQQGLEPRRLYRARLSYEERHKAREAGFRWNEPVSG 274 >gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 298 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D ET G + D+ + A ++ D VF + ITGI Sbjct: 18 KFIALDAETTGLEAETDKIIEIAAIKFDLLSN---DHPVFESLINPAVKVPRKITNITGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + AE ++ + F I N +FD + F Sbjct: 75 TNKMLVDQP-PFAELAQDLKAFI---GDLPIVAYNAKFDKGFLDAEFANVGI-------- 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + ++KL +A I AH AKAD A Sbjct: 123 -------------VLNNQYHCALNLAKAAFSLPNYKLATVAKHCNIPLDEAHRAKADAIA 169 Query: 184 TLALV 188 + Sbjct: 170 AGRVF 174 >gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 204 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 28/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + + A V VD + S + +P A + GIT Sbjct: 12 YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLL-RPQGGV----GATRVHGIT 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +H ++ +N+ FD + F R S Sbjct: 67 REMVEPAPRFE-DVGMELHGLLVDR---VVVAHNLAFDAKFLVTQFARLGVHSPEI---- 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 A ++ S+KL D A G+E +AH A D AT Sbjct: 119 ---------------AGGACTLRTSQAMLPGPSYKLLDCCEAVGVELTDAHSALGDALAT 163 Query: 185 LALVWLIREK 194 L+ ++ Sbjct: 164 ARLLGFFLQR 173 >gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] Length = 914 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 28/205 (13%) Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G A DR Q A V + +IE T F +T IT + Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKDW--EIERTYTKF--INPGKAIPSFIQDLTHITNED 57 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 E + I++ + C+ +N FD + + F R Sbjct: 58 VKDS-YPFEEHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP------KWQGK 107 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 + D +++ + + FKL DLA IE NAH A D AT L Sbjct: 108 KMDTVELAKI-------------LFPMSLGFKLGDLAADLNIELANAHRADDDARATAEL 154 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLR 212 ++ L + + +K R Sbjct: 155 FKCCWKELLNLPQLTLEQMHKRSFR 179 >gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100] Length = 214 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 14/194 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G + R + A R + I + +TGIT Sbjct: 18 IIIDVETTGLEPKNHRIIEVA-TLTVRDAQPI---NSQRWLLNPEDHISEFITDLTGITN 73 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPN--------TCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + I + I+ +N+ FD + ++ RN S Sbjct: 74 AHVAKCP-TFRSVAEEIMSVLNPAGEHGSDTGQAPILVGHNVAFDYSFLQHELLRNELHS 132 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +G+ R L + + + ++L ++A H H A Sbjct: 133 PIND-AHGSGREQLRAPYTPPLLCTAEIARTLIPRSAVGRYRLANVAAYFDAPHRPQHRA 191 Query: 178 KADVYATLALVWLI 191 DV+AT ++ + Sbjct: 192 DVDVWATFDVLCGL 205 >gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 61/197 (30%), Gaps = 30/197 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G + DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIEGYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E +F + N + +N FD + R Sbjct: 61 GITNNMLRTAPNCD-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERIGCG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 F+ + A S KL +L IE+ H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156 Query: 181 VYATLALVWLIREKKPK 197 T L L+ E+ + Sbjct: 157 AQVTAKLWLLMVEELEQ 173 >gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang] gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang] Length = 931 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + I++ D +TG+ Sbjct: 10 FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + E E ++ +HQ + + +N+ FD + F R Sbjct: 66 DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D +++ + +SF+L DL IEH N H A +D + Sbjct: 116 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 162 Query: 184 TLALVWLI 191 T L+ + Sbjct: 163 TAKLLRQL 170 >gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 931 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + I++ D +TG+ Sbjct: 10 FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + E E ++ +HQ + + +N+ FD + F R Sbjct: 66 DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D +++ + +SF+L DL IEH N H A +D + Sbjct: 116 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 162 Query: 184 TLALVWLI 191 T L+ + Sbjct: 163 TAKLLRQL 170 >gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] Length = 315 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + D+ Q A V+ R E ++ + + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E E F +T +I +N FD + ++ Sbjct: 66 NYRVSDARTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLSLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161 Query: 185 LALVWLI 191 A+ Sbjct: 162 AAVYQKC 168 >gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 931 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + I++ D +TG+ Sbjct: 10 FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + E E ++ +HQ + + +N+ FD + F R Sbjct: 66 DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D +++ + +SF+L DL IEH N H A +D + Sbjct: 116 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 162 Query: 184 TLALVWLI 191 T L+ + Sbjct: 163 TAKLLRQL 170 >gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W] gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II] Length = 928 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + I++ D +TG+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + E E ++ +HQ + + +N+ FD + F R Sbjct: 63 DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D +++ + +SF+L DL IEH N H A +D + Sbjct: 113 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 159 Query: 184 TLALVWLI 191 T L+ + Sbjct: 160 TAKLLRQL 167 >gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143] gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143] Length = 216 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MT-NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M + V+ D+ET G DR + VR+ E ++ + Sbjct: 1 MKADTVVVLDFETTGLSPDAGDRAIEIGAVRL-ESGEVVDRFQALM---NPGQRVSGFIE 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 TGIT A+ + F N + +N FD + R Sbjct: 57 DHTGITNTMLANSDHS-AKVMHQFADFIEGHN---LVAHNASFDKRFLDAELAR-----I 107 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDA 177 S+ FS + A + +L L GI + H A Sbjct: 108 SRSYSGD---------------FSCSLLASRRIYQQAPNHQLGTLIKYTGIASTGDFHRA 152 Query: 178 KADVYATLALVWLIREKKPKLFE 200 D T+ L + + Sbjct: 153 LYDSEMTVKLWLHLLATINDRYP 175 >gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] Length = 928 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + I++ D +TG+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + E E ++ +HQ + + +N+ FD + F R Sbjct: 63 DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D +++ + +SF+L DL IEH N H A +D + Sbjct: 113 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 159 Query: 184 TLALVWLI 191 T L+ + Sbjct: 160 TAKLLRQL 167 >gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] Length = 519 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 96/333 (28%), Gaps = 34/333 (10%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F I D ET G + ++ + + + ++ ++I Sbjct: 45 MKEAKFAIIDVETTGGGIKGNKITEICIIVL-QEGKEINRFASL---VNPGREIPLYIEK 100 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI + E + +I CI +N+ FD R F D R Sbjct: 101 LTGINDRMVEDAPY-FDELAPQIDALTQD---CIFVAHNVGFDYNVVRAEFKEAGLDFNR 156 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L +R P S+ L +L + I H + H A Sbjct: 157 K----------RLCTVRLAKKLIPGLF----------SYSLGNLCTSINIPHYDRHRATG 196 Query: 180 DVYATLALVWLIREKKPKLFEY--LYDYRNKNQ-LRKLIDIQNMTPLVHVSGMFGASRSN 236 D AT+ L + P+ + ++K + L H +G++ N Sbjct: 197 DTEATVILFQRCLDLDPEYEVIQGFLNRKSKESYFPPHFKASDFEELPHKAGVYFFKDKN 256 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV- 295 + K + + + ++ + L S I + Sbjct: 257 GKPLYIGKAIDIQKRVLSHFREKSNRKYELLQNTHSIDYELTGSELLALLREAELILKYY 316 Query: 296 -HLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327 NK Y + ++GI+ +N Sbjct: 317 PKYNKAQKNPSKPYKLTSYHNKYGIEQFALHKN 349 >gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 239 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V V + F + EA+ + GIT Sbjct: 4 IVLDTETTGIDPKEGHRIIEIGCVEV-VNRRLTGNH--FHVYINPGRHIEQEAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ ++ F + +N FD + + F + Sbjct: 61 NEFLTDKP-TFAQVAQEFVNFIK---GAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQI 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R ++ + L L GI+ H H A D Sbjct: 117 -CDVLDTLTLARQMHPGQKN--------------NLDALCKRYGIDNSHRTLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + L+ + K Sbjct: 162 ILADVYLLMTGGQTK 176 >gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010] gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010] Length = 488 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 60/191 (31%), Gaps = 28/191 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET G + DR + A + V ++ + P +TGIT Sbjct: 12 VILDCETTGGRASRDRLTEIALIEV-EDGHVVKRWQTL---LNPLRPIPPWITRLTGITD 67 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E + + F+ + +I +N RFD + R F R + G Sbjct: 68 ATVADAP-TFDEIADEL---FACLDGKVIVAHNARFDYSFLRQSFQRCG-------YTLG 116 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N + + R S L + G+ N H A AD L Sbjct: 117 NKTLCSVKLSR-------------QLFPEHRSHGLDRIIERLGLTIDNRHRAMADTEVLL 163 Query: 186 ALVWLIREKKP 196 A I + P Sbjct: 164 AFFEHISAQFP 174 >gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 256 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 79/255 (30%), Gaps = 29/255 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G D+ DR + + +V K E P+ + Sbjct: 5 LNKPICFFDLETTGIDIGKDRIVEISIFKVFPNGNK----ESKTWLVNPTIPIPPQTTAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + AE + +H + + G+N+ RFD R D Sbjct: 61 HGITDEKVANEP-TFAELAPLVHNMIKDSD--LAGFNSDRFDIPLLAEELLRAGVDFD-- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + L G NAH A+AD Sbjct: 116 --MKNKVSVDVQTIFHKMEERTLS----------------AALKFYCGKSLDNAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239 AT ++ ++ P+L + +++ D M + F + A Sbjct: 158 TMATYEILKAQLDRYPELENDMKSLSEFTTRKRIADFAGMIAFDNDDEEIFTFGKHKGAK 217 Query: 240 IAPVAW-HPRYKDSV 253 + V P Y + Sbjct: 218 VEKVLETEPGYFSWI 232 >gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z] gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum labreanum Z] Length = 228 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G + +DR + A ++ D+ K S + +D +TGITP Sbjct: 2 LIVDTETTGLNPKIDRITELAAIKFDKYGNK--SVMDEYISLPNDICYPENVQEMTGITP 59 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + G E E + P ++ +N +FD + + + R+ R+ + NG Sbjct: 60 EILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRH-----RYVFPNG 114 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184 D L V R +L D G++ N+H A DV A Sbjct: 115 WGVIDTLTVFRDRKPQP---------------HRLSDAISYYGLDGVKNSHRAIDDVVAL 159 Query: 185 LALVWLIREKKPK 197 A+ + +++ Sbjct: 160 CAVFDAMCQEQND 172 >gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49] Length = 243 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + + DP A+ + G+T Sbjct: 4 IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] Length = 207 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 66/219 (30%), Gaps = 30/219 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D+ET G A DR + V V + E A ++ I Sbjct: 6 YAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI-----HVDRSVGASWVHHI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ L E + + + + +N+ FD + + R Sbjct: 61 TARELLHAPDFEG-IAHELRDLLA---GRVFVAHNVSFDSRFLLAEYSRMGASIPVDQST 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +L M+ + G KL D GI + +AH A +D +A Sbjct: 117 -------MLCTMKLSRSLIGRG-------------KLADCCEYFGIANEDAHSALSDAHA 156 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 T L+ + E PK + + P Sbjct: 157 TAILLGRLLEADPKWPGFQRRLDAAGAAAEQWPTFATLP 195 >gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 240 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 27/213 (12%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D ET G +V R + + V ++ F + D A + GI Sbjct: 3 YVVLDTETTGLEVRQGHRIIEIGCIEV--NGRQVTDHH-FHQYINPEREVDEGAFQVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ F + +N FD + R D Sbjct: 60 SDEMLADKPK-FKQIAKDFLDFVQ---GSTLIIHNASFDIGFLDGELERLGLGKMADYVD 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 D L + R ++ L L G H H A D Sbjct: 116 G---VIDSLGMAREMFPG--------------KRNNLDALCDRLGVNNAHRQLHGALLDS 158 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 + + + L L + + + ++ Sbjct: 159 QILAEVYLAMTRGQDSLVIDLNAQHDDDGVERI 191 >gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 458 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 24/198 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY---LPDPEAV 58 ++ FV+YD ET G + Q V+V ++ ++ F Y Sbjct: 268 SDTFVVYDLETTGLNSEFHAVIQIGAVKVVDG--VVDESQTFEELVNPKYSKVSVSDNIT 325 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ITGIT ++A V E +F + + G+NN FD + + Sbjct: 326 KITGITDEEAKNARQVW-EVIPEFVKFI--GDDTLAGFNNAAFDSKFLERAGRHSNIII- 381 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 N ++D++ + I D L + A GI++ AH A Sbjct: 382 ------TNKQFDIMKYAKRI----KKKCNLEINGDE-----LNNYAEYFGIKNEKAHTAL 426 Query: 179 ADVYATLALVWLIREKKP 196 +D T + +R+ Sbjct: 427 SDAITTAKVYIKLRQLDE 444 >gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] Length = 315 Score = 90.3 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 32/209 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + DR Q A VR R E + F + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDRIIQVAAVRY-RNHELADQFVSF---VNPERFIPNRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E F I +N FD + ++ Sbjct: 66 NYRVSDAPTI-QEVLPLFLAFL---GEDTIVAHNASFDMRFLKSNANMLRLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +++H+A D Sbjct: 116 KNIVIDTVFLAKRY-------------MKHAPNHKLETLKRMLGI-CLSSHNALDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK 213 A+ + + K + + Sbjct: 162 AAVYQKCAAIQEEG----QKKTKKETVEE 186 >gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 292 Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 26/192 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V+ D ET G D + + V + Q E ++ E + + E + +TG Sbjct: 123 KKYVVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFESLIRQ---EIKLSNEIIKLTG 179 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + G + + + F + N FD + +N + Sbjct: 180 ITDNDLINGG----DEKKVLEDFVCFIKNHPLVGYNFNFDMKFLNYNLEKNSLKEITNT- 234 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +DL ++ F ++KL+ + GI+ H A AD Sbjct: 235 -----TYDLKTYVKREKMFL-------------KNYKLETVLKEYGIKKKVDHRALADAL 276 Query: 183 ATLALVWLIREK 194 T+ L + E Sbjct: 277 VTVNLASQVNEF 288 >gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 258 Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 79/257 (30%), Gaps = 29/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + +++ + E + + + I Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKIYPNGNE----ESKTMRINPEMHIPETSTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + ++ + + I G+N+ RFD F R D Sbjct: 61 HGIHDEDVADCP-TFKQIAKELAKSIE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + + + + ++K G +AH A+AD Sbjct: 114 -----------IDLSKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157 Query: 181 VYATLALVWLIREK--KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT ++ ++ + + + + + + +F + Sbjct: 158 TRATYEVLKAQLDRYPDTLQNDVAFLSEYSTYSKNVDFAGRIVYDDNGVEVFNFGKYKGM 217 Query: 239 LIAPVAWHPRYKDSVIG 255 +A V + I Sbjct: 218 PVAEVLKRDQGYFGWIM 234 >gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] Length = 801 Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D ET G+ VA R Q + + I+ E F D +T Sbjct: 5 KTFVVVDLETTGQSVAKGGRIIQIGMTFI-KNRRIIDHFESF---VNPAQPIDRNIQQLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ ++ E E + I + +I +N+ FD Y + F R + Sbjct: 61 HISQKEVKNAPYFE-EIAPVIQNLLTD---TVIIAHNVNFDYPYLNDEFARTGFPEL--- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N+ D + + + A ++L DL I NAH A AD Sbjct: 114 ---TNAAIDTVQLAQI-------------LLPTAPGYRLLDLTTYLNITLNNAHRANADA 157 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 +AT L + ++ +L + Sbjct: 158 HATALLFLSLWQRAEQLPTLVLQ 180 >gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89516680|gb|EAS19339.1| putative DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 255 Score = 89.9 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 75/251 (29%), Gaps = 29/251 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G +++ DR + A +V + + + + GIT Sbjct: 9 ICFFDLETTGVNISKDRIVEIAIHKVLPDGTEK----TYTYRVNPTVPIPAATTAVHGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + IH + + G+N+ RFD R D Sbjct: 65 DDMVKDEP-TFKELAHEIHNIIKDSD--LAGFNSNRFDIPLLAEEMLRAGVDFE----MG 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D+ ++ + + + + NAH A+AD AT Sbjct: 118 NRNAIDVQNIFHKMEQRTL----------------VAAYKFYCDKDLTNAHSAEADTIAT 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTALIAPV 243 ++ ++ P L + + RK +D M F + + V Sbjct: 162 YEVLKGQLDRYPDLENDMNALAEFSTRRKPVDFAGMLAFNDQGEECFNFGKHKGKKVVDV 221 Query: 244 AW-HPRYKDSV 253 P Y + Sbjct: 222 LEKEPGYYSWI 232 >gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 244 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + + DP A+ + G+T Sbjct: 4 IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F I +N FD + F R + Sbjct: 61 TEFLRDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] Length = 209 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 30/197 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G + DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIEGYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E +F + N + +N FD + R Sbjct: 61 GITNNMLRTAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINLG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 F+ + A S KL +L IE+ H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156 Query: 181 VYATLALVWLIREKKPK 197 T L L+ E+ + Sbjct: 157 AQVTARLWLLMVEELEQ 173 >gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC BAA-286] Length = 256 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 7/123 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G D DR + + ++V + EV + + P A + Sbjct: 5 LKNPLVFFDLETTGTDTVKDRIVEISYLKVYPNGK----QEVKTKRLNPEMPIPPGATAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + ++ + + G+N+ RFD F R D Sbjct: 61 HGISDEDVKDCP-TFKQIAKSLADQME--GCDLAGFNSSRFDIPLLAEEFLRAGVDIDFS 117 Query: 121 SWD 123 Sbjct: 118 KRK 120 >gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16] gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16] Length = 246 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 57/200 (28%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G A DR + V + F+ P D D A+ + GIT Sbjct: 7 IVLDTETTGLSAATGDRLIEIGCVEL-MNRRLTGRHLHFYVNPERD--IDEGAIAVHGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I +F I +N FD + F +R N Sbjct: 64 VEFLADKPR-FAEVVNDIREFIQDAELII---HNAPFDLGFLDMEFQLLGLPPFRQHAGN 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 ++D +R L L GI H H A D Sbjct: 120 ------VIDTLREARQMF-----------PGKRNSLDALCDRLGISNAHRTLHGALLDAE 162 Query: 183 ATLALVWLIREKKPKLFEYL 202 + + + L + Sbjct: 163 LLAEVYLAMTRGQDSLVIDM 182 >gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G DR + V K+E+ F C + D A I G++ Sbjct: 4 IVFDTETTGLSPINGDRLVEIGCV---ELINKVETGNSFHCYFNPERPMDAVAESIHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + + S + +N FD + + + + Sbjct: 61 DAFLADKPL----FADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRM- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R + + L L GI+ H H A D Sbjct: 116 ----VDTLAIARGKHPGA--------------KHTLDALCTRYGIDRSHRVKHGALLDAE 157 Query: 183 ATLALV 188 L Sbjct: 158 LLAQLY 163 >gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396] gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396] Length = 240 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 70/227 (30%), Gaps = 32/227 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G + + R + V E I+ + + + D A + Sbjct: 4 IVLDTETTGLETSQGHRIIEIGCV------EVIDRSLTGNHYHVYINPEREVDAGAFEVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + ++ F S + +N FD + F + + Sbjct: 58 GISNEFLADKPK-FKQVAQDFLDFISGAE---LVIHNAAFDVGFIDYEF--SLLGAPFGK 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 + S D L + R + + L L GI+ H + H A Sbjct: 112 VSDYCSVVDTLMMARKKHPGQKN--------------NLDALCKRYGIDNSHRDLHGALL 157 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 D + + + L + D + + ++ I P + V Sbjct: 158 DSEILADVYLAMTGGQTSLSLHSEDGGTEEEASEVRRINTQRPSLRV 204 >gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis ZM4] gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 234 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G DR + V K+E+ F C + D A I G++ Sbjct: 4 IVFDTETTGLSPINGDRLVEIGCV---ELINKVETGNSFHCYFNPERPMDAVAESIHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + + S + +N FD + + + + Sbjct: 61 DAFLADKPL----FADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRM- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R + + L L GI+ H H A D Sbjct: 116 ----VDTLAIARGKHPGA--------------KHTLDALCTRYGIDRSHRVKHGALLDAE 157 Query: 183 ATLALV 188 L Sbjct: 158 LLAQLY 163 >gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae bacterium D16] gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae bacterium D16] Length = 236 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 29/215 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAV 58 V++D ET G D D+ + A +RV+R + F P + LP+ V Sbjct: 12 KALVVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTFIKLPEGETLPE-NIV 70 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ +GV A+ + +I + ++ +N +FD F Sbjct: 71 SLTGITDERLQTEGVQPAKAASQIAKLM-QNGPTLMIAHNAQFDA---------CFLRGL 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 G R D LD + + + +A + N+H A Sbjct: 121 LRGQKVG--RIDWLDSLTVYKDRRAYPHKLANAI----------IAYDLTGKVQNSHRAI 168 Query: 179 ADVYATLALVWLIR--EKKPKLFEYLYDYRNKNQL 211 DV A ++ + + + L+ Y K + Sbjct: 169 DDVLALFEVLKAMDDEREDLGSYVNLFGYNPKYGV 203 >gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale DSM 17629] Length = 260 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 28/189 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ + D E G D+ + RV R E +++ +TG Sbjct: 23 KNYTVIDLEMTGLSAKNDKIIEIGAARV-RGGEIVDTISTL---VNPKQHIPQRVQELTG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT A+ + + II N+ FD + + + Sbjct: 79 ITDSDVENA----ADMDVAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNH-------KR 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D L + R S KL+DL G+ NAH A D Sbjct: 128 TLSLNAYDTLKIARKC-------------LPAEQSKKLEDLCEYFGVSRENAHRALDDAI 174 Query: 183 ATLALVWLI 191 T + + Sbjct: 175 ETKQIFEKL 183 >gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] Length = 1446 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 28/197 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D +F GV++ + E++ ++F +T I Sbjct: 396 TFVVFDLETTGLSNTRDEIIEFGGVKI-KNREEVGRLQMF---INPKRTIPAHISNLTHI 451 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +E + + +F I+ +N FD + + D Sbjct: 452 TQNDVDCAKPIE-DALDELLEFI---GDSILVAHNATFDVGFMNAACRKTGRDEL----- 502 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D L + A D F L + + AH A D Sbjct: 503 -TNPVIDTLPLSYA------------MLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDA 549 Query: 182 YATLALVWLIREKKPKL 198 +++ + + Sbjct: 550 DVLSQVMYNMMNQLGHD 566 >gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] Length = 235 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G D A R + V ++R+ + F + + + EA+ + GI Sbjct: 4 VVLDTETTGIDPAKGHRIIEIGCVELINRKL----TGNHFHVYINPERVVEQEAIEVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T V F++ + F + +N FD + F R + + Sbjct: 60 TNDFLTDKPV----FAQVVQDFIEFIKGSQLVIHNAPFDVGFMDAEFSR-IRPAVGLTN- 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181 + S D L + R + + L L A +++ H A D Sbjct: 114 DFCSVLDTLQLAREMRPGQRN--------------SLDALCRAYDVDNSARELHGALLDA 159 Query: 182 YATLALVWLIREKKP 196 + ++ + Sbjct: 160 EILADVYLMMTGGQT 174 >gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366] gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366] Length = 1476 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 30/205 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDELGNMI-EHQDYLVKPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A G+ AE + + S + NI FD YR Sbjct: 61 -DAERIHGISTELATEQGIELAEVLEKFNIALSKAK--FVVGQNIGFDVNIMGCELYRLG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + S + V+ + + ++ P G FKL +L G Sbjct: 118 VE----------SPMAQMPVLDTCTEITAELLKLPGGRGGK--FKLPNLTELHQYLFGEP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKK 195 AH+A ADV AT + + Sbjct: 166 FAEAHNATADVEATTRCFLQLIKID 190 >gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM 15868] gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM 15868] gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM] gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD] Length = 1550 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 120/397 (30%), Gaps = 41/397 (10%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + +E+ + + KP +P Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQD-YIIKPEGYDIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A I GI+ + A G E + T I+ +NI FD FYR Sbjct: 61 -NATRIHGISTKMAHEQGRDLVEILEEFKEVLKK--TKIVAGHNIEFDYNIVGAEFYRKS 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + N + D M + G + +L + G + A Sbjct: 118 IE-------NVLEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYE--KLYGEKFDEA 168 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H+A ADV AT + + + E L + ++ + + P V Sbjct: 169 HNAAADVNATAQVFFEMMRVGIIPAETLKISEEQLKVYQENHPSPIRPFAIVIRRQVEDF 228 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 + GD+ + D S + + I + Sbjct: 229 NKKKK----------------RTDFGDISEIELGDYFNFHNHSIFSSLQSTTSIGDLIDK 272 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 N+ P + +D ++ D ++ + Q+ + + ++ Sbjct: 273 AKSNQFPAVGMVDLGNMMGAFKFVSDVEKYNSGVKKAHQEYLANKQKAEEEGADFNENAP 332 Query: 355 DVDSQLYDG--FFADVDRQIMDRILRTAPEQLSTLNL 389 + + F DR + + P++ + + L Sbjct: 333 ESKELMAVLGCEFYISDRPEQKQFTKDDPDRRTNVVL 369 >gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] Length = 862 Score = 89.9 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 73/194 (37%), Gaps = 25/194 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ +++D E+ G DV D Q A ++V++ + E E F + + Sbjct: 494 KDNIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLKNNKSVK----NSEHVH 549 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + + ++G + + +F +I +N+++D + R ++ Sbjct: 550 GFSDEFLKKNGEDKNTVLKEFVKFSEDS---VIVGHNVQYDINILTSELQRAGLGEPKFK 606 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D LD+ R + + KL+ L+ E+ +HDA D+ Sbjct: 607 AF-----YDTLDIYRRFH-------------PNLRNHKLETLSHIFETENKPSHDAMDDI 648 Query: 182 YATLALVWLIREKK 195 AT ++ + Sbjct: 649 QATKDILVRAIKDD 662 >gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 241 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 66/200 (33%), Gaps = 19/200 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV+ DR A VR + +TEV PEA I GIT + Sbjct: 11 FDTETTGVDVSEDRIVSAALVR-----RHVGTTEVRTWLLDPGVPIPPEASSIHGITTEV 65 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G A I + + + N FD + R G Sbjct: 66 ARAEGQDPAGALDEIAKEIAAALSEGIPVVAFNATFDLCILQAELRRYGL--QTLEERTG 123 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184 ++D + A KL DL GIE H A DV AT Sbjct: 124 AEVAPVIDPLVLDRAV---------DRYRRGKRKLVDLCGVYGIEGDGELHTADVDVLAT 174 Query: 185 LALVWLIREKKPKLFEYLYD 204 L ++ + + P++ Sbjct: 175 LDVLGAMVTQYPEIGARTLQ 194 >gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 236 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 59/208 (28%), Gaps = 29/208 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D A R + + + I + ++F +AV + GIT Sbjct: 4 IVLDTETTGLDPAEGHRIIEIGCIEI---LHTIPTGQIFHVYIDPQRDIPEDAVRVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V A+ + F + +N FD + + + Sbjct: 61 AEFLAGKPV-FADIASEFLAFIGDAK---LVAHNAAFDMRFLNAELGLLGLEPI-----D 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + S L L GI++ H A D Sbjct: 112 SERVVDTLALARRRHPGA--------------SNSLDALCNRYGIDNTRRTKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210 + + + + + Sbjct: 158 ILADVYAELLGGRQAALTFETATALRQD 185 >gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] Length = 204 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 30/197 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G + DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIEGYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E +F + N + +N FD + R Sbjct: 61 GITNNMLRTAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDTELERIDCG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 F+ + A S KL +L IE+ H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156 Query: 181 VYATLALVWLIREKKPK 197 T L L+ E+ + Sbjct: 157 AQVTAKLWLLMVEELEQ 173 >gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1] gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 200 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 58/209 (27%), Gaps = 33/209 (15%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEK-IES-TEVFFCKPADDYLPDPEAV 58 + F + D ET G R + A VR+D ++ +A Sbjct: 9 SYKFTVVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTL---INPKKPIPFQAY 65 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I I+ + +E E ++ + +N FD + + + + Sbjct: 66 KIHKISDEMVKDAPTIE-EVLPHFSKYVEN---TVFVAHNAPFDFKFIDYFYKKTGMNCP 121 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---- 174 + D L + R G S+ L L I+ Sbjct: 122 LI------AVIDTLKLSR-------------RIIPGLKSYSLDSLIQHFNIKLKINGSYR 162 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLY 203 H A D T + + E + + L Sbjct: 163 HRAIYDALHTAIIFKKLIEIESQRKGSLL 191 >gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 1442 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 113/387 (29%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I + F+ N ++ +N I FD + + + Sbjct: 465 SQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L + RAI F S +L + +++ + AH A D Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ + Y Sbjct: 679 DFITLPSIGSQKH---LVYAQKITLENVQKAFKKLVSLALESNKPIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter diazotrophicus PAl 5] gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 54/194 (27%), Gaps = 29/194 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++D ET G D A DR + A + + F D EA + Sbjct: 1 MKRAILFDTETTGLDPARGDRVIEIAALELVGDL-PTGRH--FHVLIHPDRDIPEEASRV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G T E + F + + +N RFD + R + Sbjct: 58 HGFTLADLEGKPRFH-EIADDFLAFIGQDD---LIAHNARFDFGFLNAELKRAERPALSL 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAK 178 + D LD+ R Y P+ L L I+ H+A Sbjct: 114 -----DRMVDTLDIARDRYPGLPN--------------SLDALCRRFSIDLSARTTHNAL 154 Query: 179 ADVYATLALVWLIR 192 D + + Sbjct: 155 LDCRLLAEVYLELM 168 >gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116] gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116] Length = 201 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 30/201 (14%) Query: 7 IYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 I+D+ET G D + A + D I+ E +P + PE Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEA-IVRPNGWEI-TPEMT 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GI+ ++A+ G+ EAE +NI FDD +R R + Sbjct: 63 AIHGISHEQAMDVGISEAEALEGFLAI--NGRAARRAAHNISFDDRITRIALMRYQDEDA 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NA 174 ++ ++ RA A KL LA A A Sbjct: 121 ANAFKESGEKFCTCYRSRAQVAL--------------PRNKLPTLAEAYKHFTGEDLVEA 166 Query: 175 HDAKADVYATLALVWLIREKK 195 H A D A + + ++ Sbjct: 167 HRAMPDAQACARIYFALQGVD 187 >gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 334 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 72/281 (25%), Gaps = 35/281 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D Q + P P V+I G+T Sbjct: 31 YAVVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTL---VNPQRDPGP--VWIHGLT 84 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + ++ +N FD + R Sbjct: 85 SDMLQDAPL-FKDIAGEFAGRLADR---VLVAHNAIFDWQMIAREYARA----------- 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + KL+ LA G+ AH A D Sbjct: 130 --------EETAPVRQRLCTIALSKELNLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 181 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + L + R +TP + + + P Sbjct: 182 AEAFRPSLHAAARDGVRLPLLECR----PLTEWSDSAVTPRIGYQSSYRGGGWRPSRKRP 237 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 HP G L MR+ D+ + L E Sbjct: 238 ACPHPNPGRFEDGKPLKQGMRIAFSGDTSVERELLEDRAVE 278 >gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] Length = 203 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 56/202 (27%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + VI D+ET G DR + V++ E + + + T Sbjct: 4 DSLVILDFETTGLSPDQGDRAIEIGAVKL-EAGEVVAEFQALM---NPGFSVTSFIEGYT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E +F + N + +N FD + F R Sbjct: 60 GISNAMLAQAD-SCREVMESFAEFIADNN---LIAHNASFDRRFLDAEFSR--------- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 N + D + D A S L L + + H A D Sbjct: 107 -FNHVYQGDFSCSLLLSRRIFQD----------APSHSLGALVNYINLSGTGDFHRALYD 155 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L + + + + Sbjct: 156 AQMTAKLWMAMLDNIGERYGLF 177 >gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] Length = 188 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 27/190 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N ++ +D ET G D+ + V E I+ + + A + Sbjct: 24 LKNRYIAFDVETTGLSPINDKIIEVGAVLF-ENGEIIKKYSYL---VNLEVVIPASATAV 79 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 IT + E + +F +I +N FD + R YD Sbjct: 80 NHITNEMIQDA-TKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYD-- 136 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 D L + R ++ + +K +A + + +H A Sbjct: 137 -----GKIHYVDTLSLSRNLFKGLHN-------------YKQDTVATHFELVNFQSHRAV 178 Query: 179 ADVYATLALV 188 +D ++ Sbjct: 179 SDAEICGRIL 188 >gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89518317|gb|EAS20973.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 1450 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 66/206 (32%), Gaps = 30/206 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPKRWDAPYTDVDNWPRVIQIAWQLHDEMGNLI-EHKDYLVKPDGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ A + GV E + S + N++FD + F R Sbjct: 61 -DAERIHGISTALADQQGVPLEEMLSEFNIALSKAK--FVVGQNLKFDLNVTGAEFER-- 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + + V+ + Q P G FKL L Sbjct: 116 --------TQIANDLQEIPVLDTCTEHTAQLCQIPGGRGGK--FKLPTLTELHQFLFNQP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196 AH+A ADV AT + K+ Sbjct: 166 FGEAHNATADVEATTRCFLELIRKQQ 191 >gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] Length = 484 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 70/233 (30%), Gaps = 30/233 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F ++D ET G D Q VRV I E + + G++ Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRV-LNGRLI-EGEELNTLVDPGRPIPEASTRVHGVS 334 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + H F +I +N FD + R + Sbjct: 335 TAMVQGAPDI-AEAAAEFHLF---ATDAVIVAHNAPFDMAFLRRHAKASGLAW------- 383 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 +LD + + L L I A H A D Sbjct: 384 ---DHPILDTVLLSAVLF----------GASVPHTLDALCERLDITIPPALRHTALGDAQ 430 Query: 183 ATL-ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 AT ALV +I + + F L + Q + ++++ P+ + + A + Sbjct: 431 ATACALVQMIPMLQARGFNSLLQVIEQTQRHGRL-LEDLNPVDNHGSTWQAGK 482 >gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34] Length = 241 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ P D +A+ + GIT Sbjct: 4 IVLDTETTGLNHATGDRLIEIGCVEL-VNRRLTGRHLHFYVNPERD--IHEDAIAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + F I +N FD + F R +R N Sbjct: 61 LDFLADKPK-FAEIVNDVRDFVQDAELII---HNAPFDLGFLDMEFQRLDLPPFRQHASN 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 ++D +R L L G H H A D Sbjct: 117 ------VIDTLREARQMF-----------PGKRNSLDALCDRLGVSNSHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQNSLVIDML 180 >gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] Length = 222 Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 8/108 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + DR + A VR D + ++S D + I GIT Sbjct: 21 FAVIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTL---LNPDGK-AIKNSHIHGIT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +E F S + + +N FD R Sbjct: 77 NDMVATAP-TFSEVYG---DFTSYIDGMHLFAHNAPFDSKMIVAEVDR 120 >gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium BAL38] gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium BAL38] Length = 256 Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 77/241 (31%), Gaps = 28/241 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G DVA DR + + +V K E P+ + Sbjct: 5 LTRPICFFDLETTGIDVARDRIVEISIFKVYPNGNK----ESKTWLVNPTIPIPPQTTAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + E + ++H + + G+N+ RFD R D Sbjct: 61 HGITDEKVANEP-TFKELATQVHNMIKDSD--LAGFNSDRFDIPLLAEELLRAEVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + ++K G NAH A+AD Sbjct: 114 -----------FDMKNRVSVDVQTIFHKMEERTLSAAYKF-----YCGQSLENAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239 AT ++ ++ L + +K +D L +F + AL Sbjct: 158 TMATYEILKSQLDRYENLENDMKSLSEFTTRKKSVDFAGFITLNKEGKEIFSFGKHKGAL 217 Query: 240 I 240 + Sbjct: 218 V 218 >gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51] gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 929 Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 32/189 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G D+ D +FA + ++ E E F + + +TGI Sbjct: 5 KIVVIDIETTGFDIYNDEIIEFAALCIEEG----EEAEAFSVLISPRRQVPERILRLTGI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +P++ + G + A + +I F II +N+ FD + +F Sbjct: 61 SPEELKQAGSLHA-YRDKILDLFQD---AIIVGHNVEFDLGFLEQALTIHF--------- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVY 182 N+ WD L++ R +Y +KL DL + G AH A D Sbjct: 108 -ENTLWDTLEIARILY-------------PNMPKYKLGDLTKSLGLTPLEKAHRALFDAR 153 Query: 183 ATLALVWLI 191 A L+ Sbjct: 154 AAWELLQAC 162 >gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537] Length = 798 Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 64/192 (33%), Gaps = 31/192 (16%) Query: 1 MTN---HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M N FV+ D ET G+ V R Q + ++ + ++ E F L D + Sbjct: 4 MMNANDSFVVVDLETTGQSVDRGGRIIQIGMTFI-KKRKIVDHFETF---VNPGQLIDRQ 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +T I+ + E E + IH +I +N+ FD Y F R Sbjct: 60 IQQLTHISQNEVQHAPYFE-EIAPVIHTLLKDS---VIIAHNVNFDYPYLNEEFERAGLS 115 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +D + A ++L DL I+ NAH Sbjct: 116 PL---------DIPAIDTVMLSQILL----------PTAPGYRLVDLTQYLDIKLSNAHR 156 Query: 177 AKADVYATLALV 188 A D +AT L Sbjct: 157 ANEDAHATAELF 168 >gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553] gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553] Length = 208 Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 58/182 (31%), Gaps = 29/182 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63 F++ D ET G A +FA VRV E + + + P P +TGI Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRV----ETCGTLAREYTQVVRTAAPVPSFITRLTGI 94 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + R GV + F + ++N FD + R + Sbjct: 95 TQAEVDRHGVP---VMQAFSSFLEFVEDLPVFFHNASFDRRFLGAAADRTGMPFANAT-- 149 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + R + S KL LA G + H A ADV Sbjct: 150 -----HCTLALARRAW-------------PELPSHKLDILARHVGASN-PTHRALADVRT 190 Query: 184 TL 185 T+ Sbjct: 191 TV 192 >gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] Length = 244 Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I +F I +N FD + F + Sbjct: 61 TEFLSDKPK-FAEVADQIREFVRGAELII---HNAPFDLGFLDAEFALLGLPPFSEHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192] gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192] Length = 201 Score = 89.5 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 30/201 (14%) Query: 7 IYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 I+D+ET G D + A + D I+ E +P + PE Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEA-IVRPNGWEI-TPEMT 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GI+ ++A+ G+ EAE +NI FDD +R R + Sbjct: 63 AIHGISHEQAMDVGISEAEALEGFLAI--NGRAARRAAHNISFDDRITRIALMRYQDEDA 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NA 174 ++ ++ RA A KL LA A A Sbjct: 121 ANAFKESGEKFCTCYRSRAQVAL--------------PRNKLPTLAEAYKHFTGEDLVEA 166 Query: 175 HDAKADVYATLALVWLIREKK 195 H A D A + + ++ Sbjct: 167 HRAMPDAQACARIYFALQGVD 187 >gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] Length = 245 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 28/189 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ + D E G D+ + RV R E +++ +TG Sbjct: 8 KNYTVIDLEMTGLSAKNDKIIEIGAARV-RGGEIVDTISTL---VNPKQHIPQRVQELTG 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT A+ + + II N+ FD + + + Sbjct: 64 ITDSDVENA----ADMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNH-------KR 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D L + R S KL+DL G+ NAH A D Sbjct: 113 TLSLNAYDTLKIARKC-------------LPAEQSKKLEDLCEYFGVSRKNAHRALDDAI 159 Query: 183 ATLALVWLI 191 T + + Sbjct: 160 ETKQIFEKL 168 >gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 153 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 46/180 (25%), Gaps = 30/180 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V +D ++ + P Sbjct: 1 MPQPIAVIDFETTGMGPGQGARATEVAIVLLD-NGVVVDRFQSLM---KTGAWIPPFITQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + + + + + +N FD + + + Sbjct: 57 LTGITNAMVNAAP----QAAAVMREAARFVGNAPMVAHNAAFDRKFWQAELALAGLPAP- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + A S KL L +G+ AH A Sbjct: 112 ---------HPFACTVLLSRRLY----------PQAPSHKLGMLVDYHGLPRTGQAHRAL 152 >gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO 3283-01] gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-12] Length = 224 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 30/191 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + +D ET G D A DR + A + + + + EA Sbjct: 1 MKRSIL-FDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTL---IDPERDVPEEASR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G T AE + F + + +N RFD + R + Sbjct: 57 VHGFTRADLEGKPK-FAEIAD---DFLAFVGDDPLIAHNARFDFGFMNAELKRAGKKTL- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D LD+ R + P+ L L G++ H+A Sbjct: 112 ----GLDRMVDTLDMARERFPGMPN--------------SLDALCRRFGVDLSARTTHNA 153 Query: 178 KADVYATLALV 188 D + Sbjct: 154 LLDCKLLADVY 164 >gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] Length = 206 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 50/199 (25%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G DR + VR+ + + D T Sbjct: 5 DTVVVLDFETTGLSPGEGDRAIEIGAVRI-ESGKVTARFQELM---NPGRRVDSFIESFT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ R F N + +N FD + R Sbjct: 61 GITNLMLADA-RPCSDVMRDFADFIGEDN---LVAHNASFDKRFLDAELERI-------- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 + FS + A KL L I H A D Sbjct: 109 ------------ALSYTGQFSCSMLAARRIFQQAPDHKLGTLVEFMNIPVEGVFHRALYD 156 Query: 181 VYATLALVWLIREKKPKLF 199 T L + + + Sbjct: 157 SEMTAKLWLAMLNDVRRRY 175 >gi|167032729|ref|YP_001667960.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] gi|166859217|gb|ABY97624.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] Length = 203 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 64/205 (31%), Gaps = 13/205 (6%) Query: 1 MTNHFVIYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M+ ++D ET G + + E ++S E +P + Sbjct: 1 MSELICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEA-MVRPDGWSI 59 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P+ AV I GIT + AL G+ EA ++ + +N+ FDD R R Sbjct: 60 PNEVAV-IHGITNELALEHGIPEALAIEGFLNIWNQAG--LRVAHNVSFDDRIMRIALKR 116 Query: 113 NFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 ++ + + I + L G + Sbjct: 117 FQDAWVAETFRDSPKFCTCQSTTSIVKCPPTEKMIAAGRGKQHKPPTVTEALKFFTGEDL 176 Query: 172 VNAHDAKADVYATLALVWLIREKKP 196 V H A+ D A + + ++ + Sbjct: 177 VGGHRARPDAEACARVYFALQAFQS 201 >gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60] Length = 243 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 56/199 (28%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQVGAHYEGHRIIEIGAVEV-VNRRLTGR--NFHVYLKPDRLVDPEAFTV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ L AE + F + +N FD + F + D + Sbjct: 66 HGISDDFLLDKP-SFAEVADEFLAFIRGAE---LVIHNAPFDIGFMDYEFAKLGRDLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + ++ + Sbjct: 166 LDAQILADVYLIMTGGQTS 184 >gi|189467072|ref|ZP_03015857.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM 17393] gi|189435336|gb|EDV04321.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM 17393] Length = 256 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G + +DR + ++V + T + + A + Sbjct: 5 LKNPIVFFDLETTGTSINVDRIVEICYLKVHPNGNEEAKTL----RINPEMHIPEGASAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E +R I + G+N+ RFD F R D Sbjct: 61 HGIYDADVVDCP-TFKEVARTIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ R + + + ++K G +AH A AD Sbjct: 114 -----------IDLSRRKFVDVQVIFHKLEQRTLSAAYKF-----YCGKNLEDAHTAAAD 157 Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ ++ P+ + + + + + M + +F + Sbjct: 158 TQATYEVLMAQLDRYPELQNDIAFLAEYSSFNKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 + V P Y ++ Sbjct: 218 VTDVLKRDPGYYSWIL 233 >gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15] Length = 242 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 59/202 (29%), Gaps = 27/202 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ + D A+ + GIT Sbjct: 4 IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFYF--NPERQIDAGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R S + Sbjct: 61 NEFVADKPK-FAEVVDEIRDYVQGAEAII---HNAAFDLGFLDMEFKRLGLPS-FREHLD 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 G+ D L R ++ L L G+ H H A D Sbjct: 116 GH--IDTLLDARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 + + + L + + Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLE 181 >gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 927 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 76/248 (30%), Gaps = 38/248 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ D ET G + D + V+ E +E+ + + + + Sbjct: 1 MEPIYIALDLETTGLEPGRDEIIEVGAVKFRGN-EVLETYQTL---VKPKQVLPIKIARL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + ++ +F I +++ D + + + Y Sbjct: 57 TGIDAHELTTAP-TFNSIGGQLAKFLKS---YPIIGHSVDNDLRFLQQQGLKVTQPHY-- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D D+ ++ L +A I+H +AH A AD Sbjct: 111 ---------DTFDLA-------------TLLIPQLPNYSLSTIAEHLQIQHPDAHRALAD 148 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 A+ + + +K + + + + PL + G R T Sbjct: 149 AEASRLVFSALLDKLAE-----LSAAELHSIAQTTQKLQW-PLAKLFGEIAKRRVQTLWQ 202 Query: 241 APVAWHPR 248 AP+ + P+ Sbjct: 203 APIEFQPK 210 >gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146] gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella ictaluri 93-146] Length = 243 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 56/198 (28%), Gaps = 30/198 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQVGAHYEGHRIIEIGAVEV-VNRRLTGR--NFHVYLKPDRLVDPEAFTV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ L AE + F + +N FD + F + D + Sbjct: 66 HGISDDFLLDKP-SFAEVADEFLAFIRGAE---LVIHNAPFDIGFMDYEFAKLGRDLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKP 196 D + ++ + Sbjct: 166 LDAQILADVYLIMTGGQT 183 >gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] Length = 235 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V I + + F + EA + GI+ Sbjct: 4 IVLDTETTGLDPKQGHRIVEIGAV---ELLNSIPTGQSFHVYIHPERDMPDEAFRVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE + F I +N FD + F R + W Sbjct: 61 LEFLTGKPL-FAEIVPALIDFLGEAK---IIAHNAEFDFRFLNAEFLRAEAEPLAWE--- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + S L L G++ H A D Sbjct: 114 --RVVDTLALARRRFPGA--------------SNSLDALCARFGVDTSRRVKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 ILAEVY 163 >gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 457 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 82/284 (28%), Gaps = 34/284 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + I D ET GR ++ + + + D + ++ + L +TG Sbjct: 5 PTYTIIDVETTGRS---NKITEISIFKFDGE-TIVDEFTSL---VNPNVLIPTHITALTG 57 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I AE ++ + I +N+ FD RN F D Sbjct: 58 IDNAMVADAP-TFAEIAKEVLSITKDS---IFVAHNVNFDYNVIRNEFKAIDLD------ 107 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R L +R A G S+ L L + I + H A+ D Sbjct: 108 ----FRRKKLCTVRLSRAL----------IPGFKSYSLGKLCKSLNIHISDRHRARGDAA 153 Query: 183 ATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT+ L L+ K + F+ +K + + + I Sbjct: 154 ATVILFQLLLTKDAAAETFQKFLKRESKEATLPPHLPSKIFDDLPAKPGIYYFKDKKGKI 213 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284 V + V+G + + DL S EL Sbjct: 214 IYVGKAKNIQKRVLG-HFYNKSKKELDLCRETADIDYELSGSEL 256 >gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533] gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533] Length = 320 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 28/239 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ + D ET G DR + G++V E + + P + +P + Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI G+ E ++ +F + I+GYN NF Sbjct: 88 GIDETTIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +DV R +F P +L D I H D Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T + ++ KLF+ + R + ++ L LV S F + ++ ++ Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEMVKTLDLTSEWPELVKQSQAFRSPFAHKNVV 240 >gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 485 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 59/221 (26%), Gaps = 32/221 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +VI+D ET G D Q A RV + + TE+F A I G Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRV-VNGKMV-KTEMFDTLVNPGRPIPLSATNIHG 347 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +F F + ++ +N FD + Sbjct: 348 ITDAMVADAP----DFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIG-------- 395 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180 R + + L LA I H A D Sbjct: 396 ------------ARFDHPVLDTVLLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGD 443 Query: 181 VYATLALV-WLIREKKPKLFEYL--YDYRNKNQLRKLIDIQ 218 AT + L+ + K E + K R L D+ Sbjct: 444 ALATTEVFLKLLPMLQAKGIETFGDLLAQTKKHARLLEDLN 484 >gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 384 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 58/193 (30%), Gaps = 18/193 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A +R+D EA I GI + Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGTV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A DG I + + T ++ N R+D R+ + Sbjct: 68 ARADGAPARGAVAEITEALAAELRAGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--LL 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G ++D + + S L L G+ AHDA++D A Sbjct: 125 GAEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYGVRLDTAHDARSDALAA 175 Query: 185 LALVWLIREKKPK 197 L + P Sbjct: 176 TLLARSLGAHHPT 188 >gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] Length = 239 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 58/193 (30%), Gaps = 18/193 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A +R+D EA I GI + Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGTV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A DG I + + T ++ N R+D R+ + Sbjct: 68 ARADGAPARGAVAEITEALAAELRAGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--LL 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G ++D + + S L L G+ AHDA++D A Sbjct: 125 GAEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYGVRLDTAHDARSDALAA 175 Query: 185 LALVWLIREKKPK 197 L + P Sbjct: 176 TLLARSLGAHHPT 188 >gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 361 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 57/189 (30%), Gaps = 30/189 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G D + +RV + + ITGIT Sbjct: 11 IVDIETTGLSPDNDNIIEIGALRVRDN-KIVADFSQLIKASKP---LSKTISQITGITDD 66 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 E + F + + +NI FD + D Sbjct: 67 MLADAK----ELDDTLSDFLRFVDNDTVVGHNIAFDANFISKKCVAYGLD---------- 112 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYATL 185 + D D + A PD S KL+D+ + GI + H A AD Y T Sbjct: 113 FKNDTYDTLAACKQEYPDV-----------SHKLEDMIIQLGIKDSGIHHRALADCYHTH 161 Query: 186 ALVWLIREK 194 +L+ ++ Sbjct: 162 SLMTALKNH 170 >gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] Length = 221 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 19/188 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G + DR + + + S+ + K + + EAV I GI Sbjct: 36 FVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQ---EVFNEEAVAIHGIL 92 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V E E + +F I+ +++ FD R + + + Sbjct: 93 RENRKYKKVSEEEAVKAFLEFI---GDAILVGHHVGFDIGIINYALKRLGAPKLKNKFTD 149 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + D + L DL I + H A D Y T Sbjct: 150 TG-------------VLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYIT 196 Query: 185 LALVWLIR 192 + Sbjct: 197 ALAFLKVM 204 >gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 1442 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 113/387 (29%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I + F+ N ++ +N I FD + + + Sbjct: 465 SQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L + RAI F S +L + +++ + AH A D Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ + Y Sbjct: 679 DFITLPSIGSQKH---LVYAQKMTLENVQKAFKKLVSLALESNKPIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9] gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9] Length = 240 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 57/194 (29%), Gaps = 26/194 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G D R + AG+ + + + P D DP+A + GI+ Sbjct: 4 IILDTETTGLDPQSHRLIEVAGLEM-VNRKLTGRHLHLYIHPQRD--IDPDAQRVHGISL 60 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 V + I F I +N FD + F R + + Sbjct: 61 DMLEGKPV-FKAVAGEIADFLRDAELII---HNAAFDIGFLNAEFARVGLPA---TQKVA 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 + D L + R I+ L L I+ N H A D Sbjct: 114 GNVIDTLAMAREIFPG--------------KRNNLDALCDRFDIDRSNRTLHGALIDCEL 159 Query: 184 TLALVWLIREKKPK 197 + + + Sbjct: 160 LADVYLAMTRGQES 173 >gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-2A] gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-2A] Length = 257 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 80/257 (31%), Gaps = 33/257 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVF 59 +T +D ET G D++ DR + A +++ ++ + + + EA Sbjct: 5 LTKPLCFFDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEW-----RTNPEQPIPAEASA 59 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + + E S I+ F + GYN+ RFD R D Sbjct: 60 VHGITDEMVASEP-TFKELSNEIYSFIK--GCDLAGYNSDRFDIPLLVEELLRAEVDFDF 116 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D+ + + + L E +AH A A Sbjct: 117 KNNKT----VDVQTIFHKMEQRTLT----------------AALRFYCNEELTDAHSAHA 156 Query: 180 DVYATLALVWLI---REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 D AT ++ ++ +L ++ ++ + FG + Sbjct: 157 DTKATHDVLIAQLDRYQELEPNIAFLNEFSSRRKTVDFAGFVVYNKDEEACFGFGKHKGK 216 Query: 237 TALIAPVAWHPRYKDSV 253 +A P Y V Sbjct: 217 KVTDI-LANEPGYFGWV 232 >gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 1442 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 56/426 (13%), Positives = 121/426 (28%), Gaps = 51/426 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E +I + F+ N ++ +N I FD + + + Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 D L + RAI F S +L + +++ + AH A D Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ + Y Sbjct: 679 DFITLPSIGSQKH---LVYAQKITLENVQKAFKKLVNLALESNKLIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAP-----EQLSTLNLP--FSDRRLPELFFRYRARNF 408 +Y + P +Q S ++ D L L Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAYLEDENLVNL----IINEN 791 Query: 409 PHTLSE 414 P ++ Sbjct: 792 PQIINS 797 >gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54] Length = 183 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 56/183 (30%), Gaps = 27/183 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G A +FA VRV E + P +TGIT Sbjct: 17 FVVADLETTGLSTASCEILEFAAVRVGADGAA-EREYAQVVRTRATV--PPFITRLTGIT 73 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R GV + F + ++N FD + + + Sbjct: 74 EAEVERQGVPVGQAFAAFLDFVED---LPVFFHNASFDRRFLDAAALQTGLPFANAT--- 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R + S KL LA G H A ADV T Sbjct: 128 ----HCTLALARRAW-------------PELPSHKLDVLARHVGAS-EPTHRALADVRTT 169 Query: 185 LAL 187 +A+ Sbjct: 170 VAV 172 >gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] Length = 866 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 25/176 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D E+ G DV D Q A VR+ + E F C P + + G + Sbjct: 513 VVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLC----PSRPVGASERVHGFSD 568 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +G + F C++ +N+ FD + R Sbjct: 569 AFLAENGGAP---CAALEDFLDFSKGCVLVGHNVMFDLTITSQNLARAG-----SVQTLS 620 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N +D LD+ R + KL ++ A G H +H+A D+ Sbjct: 621 NVWYDTLDISRRY-------------MKDLPNHKLSTVSAALGAAHDPSHNAMDDI 663 >gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] Length = 236 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 59/197 (29%), Gaps = 33/197 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G D R + V E IE + + + EA+ + Sbjct: 4 IVLDTETTGIDPNEGHRIIEIGCV------EVIERELTGRNYHVYINPEREVEAEAITVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + AE + +F + +N FD + + F R Sbjct: 58 GITNEFLADKPK-FAEVADEFFEFIKGAE---LVIHNAAFDVGFMDSEFARL---KPVRK 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + D L + R + + L L G+++ N H A Sbjct: 111 TADHCGIVDSLAIARKKHPGQKN--------------NLDALCKRYGVDNSNRDLHGALL 156 Query: 180 DVYATLALVWLIREKKP 196 D + L+ + Sbjct: 157 DAEILADVYLLMTGGQT 173 >gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 966 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 32/193 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V D E G D D + A ++ ++ E +P + + Sbjct: 1 MSGIYVALDLEATGMDPERDEIIEIAAIKFRND-RVLDRWESL-VRPRGPIPFN--ITSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + R + + R+ F I + FD R Y Sbjct: 57 TGIGAKDVRRAP-IFPVVAPRLRDFVRNH---PIVGQSPEFDIQMLAGAGLRLQNPLYDT 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL ++ L +A G+ + H A AD Sbjct: 113 FQLATILIPDL------------------------PAYNLATIAARLGVSVPHQHRAMAD 148 Query: 181 VYATLALVWLIRE 193 V T+A+ +++ Sbjct: 149 VETTMAVFLGLQD 161 >gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis MSMB43] Length = 379 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + V V+ + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEIGVVVVNAS-----HVSTWTTLVDPRQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIASAL---FERLDGKLFVAHNASFDRGFLRAEFERAGVAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIRE 193 + + Sbjct: 166 WQFWQKLHD 174 >gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 30/191 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + +D ET G D DR + A + + F + EA Sbjct: 1 MKRTIL-FDTETTGLDPLKGDRVIEIAALELVGDL-PTGR--NFHVLIDPERDVPEEASR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G T AE + +F + +N RFD + R Sbjct: 57 VHGFTRADLEGKPK-FAEVASGFLEFV---GDDPLIAHNARFDFGFLNAELARAGQPVLD 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 D LD+ R + P+ L L I+ H+A Sbjct: 113 MGRM-----VDTLDMARERFPGMPN--------------SLDALCRRFSIDLSERTTHNA 153 Query: 178 KADVYATLALV 188 D A+ Sbjct: 154 LLDCRLLAAVY 164 >gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] Length = 235 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 29/212 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D E+ G DR + A +R + E E +TGI Sbjct: 2 NFLAIDIESTGLSPEKDRIIEIAAIRY-IDGKPKERFEKL---INPGCPLPERITELTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E E + +F + ++ +N+ D + + R Sbjct: 58 TEDMLAGA-MTEREVIK---EFLTFAGEDVLLGHNVSVDFSFIKTAADRL---------K 104 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G R +D + D + L+ + GI +H A D A Sbjct: 105 IGYER-QGIDTLYLSRTLKSDLEK----------KNLESMCEHYGIIRECSHRALEDAIA 153 Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKL 214 L L E K +++K Sbjct: 154 AATLYQKLYEEFNNNFEALFLPVELKYKVKKQ 185 >gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170] gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170] Length = 1478 Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 30/204 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D +ES + + +P +P Sbjct: 2 YLIFDTETTGLPKRWNAPITDTDNWPRCIQIAWQLHDEMGNLVESQD-YLVQPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A ++GV AE + + S T I N+ FD F+R Sbjct: 61 -DAEQIHGISTELAAQEGVPLAEVLEKFNVAMSK--TKFIVGQNVGFDVNIMGAEFHRMG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + N +LD A FKL L Sbjct: 118 VE-------NPLQELPVLDTCTEESALLCQIP-----GGRGGKFKLPTLTELHEYLFNAP 165 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + Sbjct: 166 FAEAHNATADVEATTRCFLELVRR 189 >gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8] gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8] Length = 240 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D A R + V ++ + D DPEA+ + G+T Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCV---EMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + +F + +N FD + + Sbjct: 61 TEFLSDKPR-FADVADEFVKFIQGAE---LIAHNAAFDVKFFNAELAKTGRGP------- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D + L L GI H H A D Sbjct: 110 ----------VTDYCETVTDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQ 159 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 160 LLAEVWLAMTRGQD 173 >gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] Length = 239 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 51/194 (26%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D A R + V ++ + D DPEA+ + G+T Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCV---EMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + +F + +N FD + + Sbjct: 61 TEFLSDKPR----FADVVDEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPIT----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D + L L GI H H A D Sbjct: 112 ------------EYCETVTDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQ 159 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 160 LLAEVWLAMTRGQD 173 >gi|298485963|ref|ZP_07004037.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159440|gb|EFI00487.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 244 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 64/204 (31%), Gaps = 17/204 (8%) Query: 1 MTNHFVIYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M+ YD ET G D + Q E ++S E KP + Sbjct: 40 MSQLIAFYDTETTGLPRFKDPSDDPRQPHLVDICILLYTPQGELVDSFEAMI-KPEGWTI 98 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 PD A I GIT + AL G+ E E + + + +N+ FDD R R Sbjct: 99 PDEVA-AIHGITTEMALEQGIPELEALGGFLRVYEQAG--LRVAHNVSFDDRIMRIAIKR 155 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + + + + I P + +K+ +A A Sbjct: 156 FIGEQAANEFKA-MPNYCTCQSSKNIVKCPPTAKMIAAGFGRPGMYKVPTVAEALRHFTG 214 Query: 173 NA----HDAKADVYATLALVWLIR 192 H A+ D A + + + Sbjct: 215 EELVGGHRARPDTEACARIYFAMN 238 >gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 239 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 58/193 (30%), Gaps = 18/193 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D+ DR A +R+D EA I GI + Sbjct: 11 FDLETTGTDIEQDRIVTAAVIRLDASGAV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A DG I + + T ++ N R+D R+ + Sbjct: 68 ARADGAPARGAVAEITEALAAELRAGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--ML 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G ++D + + S L L G+ AHDA++D A Sbjct: 125 GTEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYGVRLDTAHDARSDALAA 175 Query: 185 LALVWLIREKKPK 197 L + P Sbjct: 176 TLLARSLGAHHPT 188 >gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1] gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1] Length = 240 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRIIEIGCVEM-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++ + F I +N FD + R + Sbjct: 61 TEFLSDKPK-FAEIAQALCDFVRGGELII---HNAPFDIGFIDAELERLGMPPLLEHCNG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L ++++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKSMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] Length = 315 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 32/209 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D+ET G + DR Q A VR R E + F + +TGIT Sbjct: 10 YVVIDFETTGFNPYNDRIIQVAAVRY-RNHELADQFVSF---VNPERFIPNRITSLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E F I +N FD + ++ Sbjct: 66 NYRVSDAPTI-QEVLPLFLAFL---GEDTIVAHNASFDMRFLKSNAKMLRLPEP------ 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D + + + A + KL+ L GI +H+A D Sbjct: 116 KNIVIDTVFLAKRY-------------MKHARNHKLETLKRMLGIRLS-SHNALDDCITC 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK 213 A+ + + K + + Sbjct: 162 AAVYQKCAAIQEEG----QKKTKKETVEE 186 >gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 285 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 7/155 (4%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G D+ DR Q + ++V ++ E +F E +T IT Sbjct: 9 LVVFDLETTGLDLVNDRIIQISYIKVHPDGKE-ERENLF---INPQKPIPQEVEALTHIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE ++++++ F+ G+N+ FD F R Sbjct: 65 NDMVKDAP-TFAEIAQKLYEKFT--GCDFAGFNSNHFDIPMLAEEFSRAGLSYDFSRSKL 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +++ + R A + +D + + Sbjct: 122 VDAQVIFHKMERRNLAAAYKFYCGRKMEDDFNAHR 156 >gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 249 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 26/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G DV DR + A VR + ++S E + E+ I I+ Sbjct: 9 FVCLDCEMTGLDVKKDRIIEIAIVRFTFE-RILDSIEFL---INPEKEVSIESQRIHHIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +I F + I +++ FD R ++ Sbjct: 65 NAMLKNQPK-FAAVYPKIKAFLKDDDN--IVGHSVGFDLQVLAQEVERLG-----ETFPT 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + + + + L+ LA+ + + H A DV Sbjct: 117 KYHVIDTLRLAK--------------EYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEIN 162 Query: 185 LALVWLI 191 +++ + Sbjct: 163 ISIFKHL 169 >gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99] gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99] Length = 206 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 59/202 (29%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +I D+ET G DR + VR+ + +++ + + T Sbjct: 7 DSVIILDFETTGLSPNQGDRAIEIGAVRI-QDGIVVDTFQELM---NPGFRVSGFIAGYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ E E R F N + +N FD + Sbjct: 63 GISNAMLANAAPCE-EVMARFADFIGNHN---LVAHNASFDQRFLDAELDAINL------ 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 G + + R +Y A + KL L IE+ H A AD Sbjct: 113 -SYGGEFACSMLIARRLY-------------QDAPNHKLGGLVEYKQIENDGVFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L L+ + L Sbjct: 159 SEMTAKLWLLMLDDMRNEHSIL 180 >gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 479 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 59/208 (28%), Gaps = 28/208 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV++D ET G V D + A RV ++ EVF + I G+ Sbjct: 272 NFVVFDTETTGLSVTKDAIVELAAARV-LNGRILDG-EVFETYVDPGRPIPAASTKIHGV 329 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + +EA H F + ++ +N FD R + Sbjct: 330 RDADVAQSPRIEA-VIPAFHDF---AQSAVLVAHNAPFDIGLLRQQEVQTGCSW------ 379 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181 ++D + + L L IE + H AK D Sbjct: 380 ----DHPVVDTVLLSALVF----------GISADHSLDALCSRLSIEIPARHRHTAKGDA 425 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209 AT + + + K Sbjct: 426 RATAEALIRLLPLLQGKGIETFGQLLKE 453 >gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 244 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + + DP A+ + G+T Sbjct: 4 IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329] Length = 204 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 58/191 (30%), Gaps = 30/191 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQQLM---NPGFRVSSFIENYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E E +F + N + +N FD + R Sbjct: 61 GITNNMLRIAPSCE-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCG----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKAD 180 F+ + A S KL +L I++ H A AD Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGIFHRALAD 156 Query: 181 VYATLALVWLI 191 T L L+ Sbjct: 157 AQMTAKLWLLM 167 >gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 61/192 (31%), Gaps = 17/192 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V V R E I E A + +AV + GIT ++ Sbjct: 11 FDLETTGTDPRTARIVTAAVVEV-RGGEPIGRHEWLA---APEVPIPDDAVAVHGITNER 66 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A G E + I + N FD R+ S G Sbjct: 67 AA-AGRPIREVADEIADVLVAHWRAGAPVVAYNAAFDLSLLAAELDRHGLRSLG-ERLGG 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++D A L+ + G+ H AH+A AD A + Sbjct: 125 APTGPVVDPYTIDRAV---------DRYRKGKRTLEAVCGEYGVAHERAHEAGADALAAV 175 Query: 186 ALVWLIREKKPK 197 + + E+ + Sbjct: 176 RVACALAERHRE 187 >gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 1442 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 112/387 (28%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E +I + F+ N ++ +N I FD + + + Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 D L + RAI F S +L + +++ + AH A D Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ L + Y Sbjct: 679 DFITLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315] gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315] Length = 244 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 27/207 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN 209 + + + L + D + + Sbjct: 160 LLAEVYLAMTRGQDSLVIDMLDDASAD 186 >gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134] gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 240 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ P D D A+ + GIT Sbjct: 7 IVLDTETTGLNAATGDRLIEIGCVEL-VNRRLTGRHLHFYVNPERD--IDEGAIAVHGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F I +N +FD + F +R Sbjct: 64 VEFLADKPK-FAEVVNEVRDFVQDAELII---HNAQFDLGFLDMEFRLLGLPPFREHV-- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 S D L R ++ L L G+ H H A D Sbjct: 118 -GSVIDTLLEARQMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 162 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 163 LLAEVYLAMTRGQNSLVIDML 183 >gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] Length = 242 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + V + F+ + D A+ + GIT Sbjct: 4 IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I + I +N FD + F R S+R Sbjct: 61 NEFVADKPK-FAEIVAEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLKLPSFREHLAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L R ++ L L G+ H H A D Sbjct: 117 ---HIDTLLEARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQNTLVIDML 180 >gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 707 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 27/189 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + A D Q R+ ++ E F ++V I G Sbjct: 516 SYTVFDTETTGLEPAAGDEIIQIGATRIVN--RRLLQHEGFEQLIDPRRPLPEDSVKIHG 573 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP+ + ++ +N FD + + Sbjct: 574 ITPEMLAGQP-PLDTVLPAFRAY---CADTVLVAHNAAFDMRFLQLKEASTG-------- 621 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R + S +L+ +A G+ + H A D Sbjct: 622 ------------VRFDQPVLDTLLLSAVLHPNQESHRLEAIAERLGVTIIGRHTAMGDAI 669 Query: 183 ATLALVWLI 191 T + + Sbjct: 670 VTGEVFLKM 678 >gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] Length = 970 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 58/203 (28%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D ET R Q A V + + I V +T Sbjct: 31 KDIYAVVDLETTRTTSESGRIIQIAIAFV-QNKKIINQFSTL---INPHESIPRNVVQLT 86 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + E + IH + I +N+ FD + F R Sbjct: 87 GINAEMVAGAP-SFEEVAESIHTMLT---GTIFVAHNVNFDLPFLNAEFQRIGM------ 136 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D + + + ++ A F+L DL + H H A +D Sbjct: 137 NTLNLVAIDTVTLSQIVW-------------PTAPGFRLVDLTSYLALVHGRPHQADSDA 183 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 AT L+ I + L Sbjct: 184 LATAELLIQIFNRLESLPMVTLQ 206 >gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 256 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 28/246 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + E+ I Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVHPNGNE----ESKTLRINPEMPIPAESSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E ++ I + + + G+N+ RFD F R Sbjct: 61 HGIFDEDIADCP-TFKEVAKNIAKDIE--GSDLAGFNSNRFDIPLLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + F + + + S + N +AH A+AD Sbjct: 112 -----------VDIDLSKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHSAEAD 157 Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT + + + + + + + M + +F + Sbjct: 158 TRATYEVLMAQLDRYDELKNDIAFLSDYSSYNNNVDLAGRMIFDENGVEVFNFGKYKGVP 217 Query: 240 IAPVAW 245 ++ V Sbjct: 218 VSEVLQ 223 >gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] Length = 204 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 30/191 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G L DR + V++ E ++S + + T Sbjct: 5 NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VNGEVVDSFQQLM---NPGFRVSSFIENYT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT E E +F + N + +N FD + R Sbjct: 61 SITNNMLRSAPSCE-EVMASFSEFIAGEN---LVAHNASFDKRFLDAELERI-------- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 N S + + + A S KL +L N H A AD Sbjct: 109 --NCGSSGEFACSLLVARRLIQE----------APSHKLGELVRYKNIDNDGVFHRALAD 156 Query: 181 VYATLALVWLI 191 T L L+ Sbjct: 157 AQMTAKLWLLM 167 >gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 234 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G DR + V K+E+ F C D A I G++ Sbjct: 4 IVFDTETTGLSPINGDRLVEIGCV---ELINKVETGNSFHCYFNPQRPMDAVAESIHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + + S + +N FD + + + + Sbjct: 61 DAFLADKPL----FADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRM- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R + + L L GI+ H H A D Sbjct: 116 ----VDTLAIARGKHPGA--------------KHTLDALCTRYGIDRSHRVKHGALLDAE 157 Query: 183 ATLALV 188 L Sbjct: 158 LLAQLY 163 >gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 1442 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 111/387 (28%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E +I + F+ N ++ +N I FD + + + Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 D L + RAI F S +L + +++ + AH A D Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ + Y Sbjct: 679 DFITLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALESNKLIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] Length = 1463 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 95/327 (29%), Gaps = 33/327 (10%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + I + + KP +P Sbjct: 2 YLIFDTETTGLPKNWNAPITDSDNWPRCIQIAWQLHDEMGQVI-EHQDYLVKPDGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ A +DGV +E + S + N+ FD F+R Sbjct: 61 -DAERIHGISTALAEKDGVALSEVLENFNIALSQAK--YVVGQNVGFDTNIMGAEFHRL- 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 N + L V+ + Q P G FKL L G Sbjct: 117 ---------NIGNDLQELPVLDTCTEKTATLCQLPGGRGGK--FKLPTLTELHKHLFGEG 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 AH+A ADV AT E + + + N P+ + Sbjct: 166 FGEAHNATADVEAT---TRCFLELIRQRVYTKEELDVQPDYFDRFSQANPQPIEFIGLKH 222 Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290 + + IA + L + ++ L S + V Sbjct: 223 INLKKASERIAKKLAAQNEAPEISQTELEDNAAKLSEVKFAHLHNHSQFSILQSTASVQD 282 Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERW 317 +K K P + D + Sbjct: 283 IVKAAAAQKMPAVAMTDMGNMMGAFHF 309 >gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] Length = 224 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 30/191 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + +D ET G D A DR + A + + F + EA Sbjct: 1 MKRSIL-FDTETTGLDPATGDRVIEIAALELVGDL-PTGR--TFHKLIDPERDVPEEASR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G T AE + F + + +N RFD + R + Sbjct: 57 VHGFTRADLEGKPK-FAEVAD---DFLAFVGDDPLIAHNARFDFGFMNAELKRAGKKTL- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D LD+ R + P+ L L G++ H+A Sbjct: 112 ----GLDRMVDTLDMARERFPGMPN--------------SLDALCRRFGVDLSARTTHNA 153 Query: 178 KADVYATLALV 188 D + Sbjct: 154 LLDCKLLADVY 164 >gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 927 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 29/198 (14%) Query: 9 DYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G D+ Q A V V E +E F P +TGI Sbjct: 2 DLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFITELTGIDES 57 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + E + + + + +N+ FD + + Y Sbjct: 58 MVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEIH------C 107 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + D +++ + A S+KL+DLA + +EH H A +D AT Sbjct: 108 PKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRADSDALATAE 154 Query: 187 LVWLIREKKPKLFEYLYD 204 L + KL Sbjct: 155 LFLQFLNEIEKLPLVTLQ 172 >gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] Length = 623 Score = 89.1 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 28/182 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A + +D + + P P V I G+TP + Sbjct: 35 VDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATL---LNPGCDPGP--VHIHGLTPAR 89 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 E E + ++ S ++ +N +FD + + F SW + Sbjct: 90 LAGAPTFE-EIAPQVGALLS---GRVLVAHNAQFDYDFLAHEFAHV------RSWVPVSR 139 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + KL LA G+ AHDA+ DV + Sbjct: 140 RLCTLALNRLV-------------GSATPDLKLGTLAAHYGVRQERAHDAQDDVRVLSGI 186 Query: 188 VW 189 + Sbjct: 187 LR 188 >gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] Length = 1571 Score = 89.1 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 26/191 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + AGV++ ++ KI + F IT I Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGVKI-KKGNKIGEFQKF---IDPQQKLTKTITDITNI 535 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ + + QF + C++ +N FD NF Sbjct: 536 TDEMLQGQQTID----QVLPQFLAFAKDCVLVAHNASFDI---------NFLKEKAKELK 582 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D M + + +++ F L+ LA ++ + H A AD A Sbjct: 583 ISLEPQPIIDTMALSQRYFSNLLKY---------FSLKRLATFFKVKLEDHHRALADATA 633 Query: 184 TLALVWLIREK 194 T + + ++ Sbjct: 634 TAEIFIKMIDQ 644 >gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] Length = 226 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 28/204 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V D ET G D D+ + V V E E+ F D +TG Sbjct: 24 DSYVAIDLETTGLDPKHDKIIEIGAVLV-IDGEIKETFSTF---VNPRRELDGRIRELTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + I + + ++I FD + + Sbjct: 80 ITGEMTAGAP----DIGDVIGRVVEFCRDLPLLGHHIIFDYSFLKRAAVNKGL------- 128 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 S D L + R L++ + GI+ +AH A AD Sbjct: 129 VFEKSGIDTLTLCRRF-------------MPEEEKKNLENASRYYGIKQTDAHRALADAL 175 Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206 L ++ + + Sbjct: 176 TAHLLYRNVKRSHFSSAPEAFRCK 199 >gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 244 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARTGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F + Sbjct: 61 TEFLSDKPK-FAEIAHQILDFVKGAELII---HNAPFDLGFLDAEFALLGLPPFSEHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922] gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922] Length = 1463 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 30/203 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + + + KP +P Sbjct: 2 YLIFDTETTGLPKDWNAPITDSDNWPRCIQIAWQLHDELGNLV-EHQDYLVKPDGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I GI+ A GV E + + + T I N+ FD FYR Sbjct: 61 -DSERIHGISTALATEQGVPLEEVLDKFQKALAK--TKFIVGQNLGFDINIMAAEFYRKG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 ++ + D L V+ + + ++ P G +KL L + Sbjct: 118 VEN----------KLDQLPVLDTCTETTAELLKLPGGRGGR--YKLPTLTELHEFLFQVP 165 Query: 171 HVNAHDAKADVYATLALVWLIRE 193 AH+A ADV AT + + Sbjct: 166 FSEAHNATADVEATARCFFELIR 188 >gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 328 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 28/184 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G R A + + +E P P V I G+TP Sbjct: 17 TVVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTL---LDPGCDPGP--VHIHGLTP 71 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + R+ + S ++ +N FD + + F R Sbjct: 72 ERLRGAP-TFDRVAERVAELLS---GRVMVAHNAAFDYAFLAHEFGRAGLHLPVEQ---- 123 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R L + R +L LA G+ AHDA D Sbjct: 124 --RLCTLALGR-------------RIGLPTPDLRLSTLAAHYGVPQHRAHDALDDARVLA 168 Query: 186 ALVW 189 ++ Sbjct: 169 GVLR 172 >gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 1442 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 51/384 (13%), Positives = 112/384 (29%), Gaps = 34/384 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E +I + F+ N ++ +N I FD + + + Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 D L + RAI F S +L + +++ + AH A D Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCN-LSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 ++ Y I + L+ +SV + + + + + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSNDEIKSIMQRYDFI 681 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 P + + + + L+ L + Y Sbjct: 682 TLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDKKFY 738 Query: 359 QLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 739 DVYVNTKGLEGKSHRFANEEYVPD 762 >gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 305 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 65 IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 121 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F R + Sbjct: 122 TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 178 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 220 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 221 LLAEVYLAMTRGQDSLVIDML 241 >gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU 1054] gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia HI2424] gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 244 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 244 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185] gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185] Length = 259 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + T + + + + Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + + G+N+ RFD F R Sbjct: 61 HGIYDADVADCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + F + + + S + N +AH A+AD Sbjct: 112 -----------VDIDMSKRKFVDVQVIFHKMEQRTLSAAYKFYCEKN---LEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ ++ P + + + + + M + + +F + Sbjct: 158 TRATYEVLKAQLDRYPDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGTEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VAEVLKKDPGYYSWIL 233 >gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Pelagibaca bermudensis HTCC2601] gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseovarius sp. HTCC2601] Length = 401 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 6/114 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D Q VRV P + + + Sbjct: 276 SYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVMDQLV--DPGIPIPPSSTKVHQV 333 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + AE RR H+F +I +N FD + R R + Sbjct: 334 SDAMVRGQPDI-AEAGRRFHRF---AKGSVIVAHNAPFDMAFLRRHRNRMGVEW 383 >gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 25/189 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G D DR + V + + + +VF C + PEA+ + GIT Sbjct: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGITD 67 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + FF+ N I +N FD + R D + Sbjct: 68 EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL-----DP 120 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYA 183 + D L + R + ++ L L G I H + H A D + Sbjct: 121 SRIIDTLSIARRKHP--------------SSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 Query: 184 TLALVWLIR 192 + + Sbjct: 167 LSDVYIKMM 175 >gi|163787973|ref|ZP_02182419.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1] gi|159876293|gb|EDP70351.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1] Length = 258 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 75/256 (29%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +++ DR + + ++V ++ + E I Sbjct: 5 LTKPICFFDLETTGINISKDRIVEISILKVHPNGKE----NTKTWVVNPEMPIPAEVTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ E S+ I+ + + G+N+ RFD R D Sbjct: 61 HGISDADVADKP-TFKELSKEIYNLIKDSD--LGGFNSNRFDIPLLAEEMLRADIDFD-- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G D+ + + + S + N +AH A+AD Sbjct: 116 --MKGMQSIDVQTI-------------FHKMEQRTLSAAYKFYCDKN---LDDAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239 AT ++ K L + +K D F + Sbjct: 158 TKATYEVLKAQLSKYEDLENDTKFLAEFSSRKKFADFAGFLIFNKQGEECFSFGKHKGKR 217 Query: 240 IAPVA-WHPRYKDSVI 254 + V P Y ++ Sbjct: 218 VVDVMEQEPGYFGWLL 233 >gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4] gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4] Length = 313 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 51/183 (27%), Gaps = 28/183 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G A+DR A V + E +E P P V + G+TP Sbjct: 5 VVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATL---LNPGVDPGP--VHVHGLTP 59 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + + + + + +N FD + R Sbjct: 60 ALLAGKPR-FSDVAAELGRVL---DGRTVVAHNAAFDASFLAAEARRAGLAPPLE----- 110 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 F KL LA G+ AHDA D A Sbjct: 111 --------------RFVCTLDFAGRLHLSTADLKLSTLAAHFGVRQRAAHDAHDDALALA 156 Query: 186 ALV 188 + Sbjct: 157 GVF 159 >gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 502 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 52/198 (26%), Gaps = 29/198 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G + + V+VD + +TGI Sbjct: 12 LAFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTL---VRPASRIPETIQRLTGID 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + + + F + + +N RFD + R F R D Sbjct: 67 DDMVADAPRFE-DIADEV---FDRLDGRLFVAHNARFDHGHLRAAFRRAGLDM------- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +L ++ PD L L +G+ + H A D Sbjct: 116 ---RPQVLCTVKLSRRLFPDH----------RRHGLDHLIERHGLAVADRHRALGDARLL 162 Query: 185 LALVWLIREKKPKLFEYL 202 I E+ P Sbjct: 163 WQFWQKIHERFPPGHIDA 180 >gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 249 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 59/209 (28%), Gaps = 27/209 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARTGDRIIEIGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + + F I +N FD + F + Sbjct: 61 TEFLSDKPK-FAEIADTLRDFIQDAELII---HNAPFDIGFLDAEFALLGLPPFS---QY 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L ++++ L L GI H H A D Sbjct: 114 CGEVIDTLVRAKSMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L + + Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGETAADDA 188 >gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 273 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 35/233 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G DV+ DR + + ++V S E + I Sbjct: 21 LTRPICFFDLETTGTDVSKDRIVEISILKVFPNG----SRESKTWLVNPTIPIPAASTDI 76 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + E +++IH + + GYN+ RFD R D Sbjct: 77 HGISDKMVAQAP-TFKELAKQIHNLIKDSD--LAGYNSDRFDIPLLAEELLRAGVD---- 129 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +DL + + ++ + + + L NAH A+AD Sbjct: 130 --------FDLKNRVTVDVQTIFHKMEQRTLSAAYKFYCKKSL--------DNAHSAQAD 173 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 AT ++ + Y N +++L D + +G + Sbjct: 174 TDATYEILKAQLD--------CYSDTLPNDVKQLSDFTTRKQIADFAGFIAYN 218 >gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] Length = 458 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 58/193 (30%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D + ++ + V +TGI Sbjct: 2 YAILDLETTGGKYNEEGVTEVAIYKFDGH-KVVDQFISL---VNPERPIQAFVVGLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++RI + CII +N +FD + F R YD Sbjct: 58 NAMLRNAPK-FYEVAKRIIEITQD---CIIVAHNAQFDYRILQLEFDRLGYD-------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G S+ L L GI + H A D AT Sbjct: 106 ------------YQRKSLCTVELAQELLPGQESYSLGKLVRNLGIPITDRHRANGDALAT 153 Query: 185 LALVWLIREKKPK 197 + L L+ K K Sbjct: 154 VKLFKLLLAKDSK 166 >gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] Length = 922 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 71/221 (32%), Gaps = 28/221 (12%) Query: 2 TNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FVI D ET G + DR Q A V ++ + + I+ + P + Sbjct: 1 MERFVIVDVETTGVSFIKGDRIIQIAFVVIEGK-KIIDRFNSY---VNPMRDIPPFIRSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I + + R+ Q + +N+ FD + + Y Sbjct: 57 TNINDNEVKDAP-TFDLVAPRLLQAL---DGAFFVAHNVDFDLSFINEELHALGYTGL-- 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ + Y + F+L L+ + + H H A +D Sbjct: 111 ----SGPVIDTVELSKIAYPTADG-------------FRLSQLSESLHMNHDQPHRADSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 AT + I +K L + N + DI ++ Sbjct: 154 AEATALIFLEIMDKLYHLPKQTLIELNNLSTKLKSDIGSII 194 >gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 211 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 53/194 (27%), Gaps = 28/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + VRV R+ ++ + + +TGIT Sbjct: 10 YVALDLETTGFYPNSCAITEIGAVRV-RKGHIVDQFQQL---VNPLRPIPRQITTLTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + R + + P I +N+ FD + D Sbjct: 66 DAMVADLD-PIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRF---------LDYNTR 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D M+ A P +L DL + GI H A +D Sbjct: 116 HIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALSD 165 Query: 181 VYATLALVWLIREK 194 T +R Sbjct: 166 AIQTQQCFEWMRHY 179 >gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] Length = 459 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 55/200 (27%), Gaps = 28/200 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ I D ET G R + A V + + +E +TG Sbjct: 5 KNYAIVDIETTGAYAGGSRMTEIA-VLIHDGVQVVEEYHTL---INPKQSIPHYIQVLTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ E + ++ I +N+ FD + + Y Sbjct: 61 ISDDMVSDAPEFEN-VAAKVFSLLQDK---IFVAHNVGFDYSFVHSQLRECGYY------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R L +R G S+ L L + GI + H A D Sbjct: 111 ----LRSPKLCTVRLSRKCF----------PGLPSYSLGKLCQSLGIAINDRHRAYGDAR 156 Query: 183 ATLALVWLIREKKPKLFEYL 202 AT L I + L Sbjct: 157 ATAVLFGRILSADNEGHIQL 176 >gi|328479965|gb|EGF49008.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462] Length = 132 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 8/117 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + A V++ + + I+ E + + +T IT Sbjct: 13 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 E E R QF + I+ +N+ FD + N + R+ Sbjct: 69 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADIDNP 121 >gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] Length = 242 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 27/185 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G D +DR + GV + T + +PA DP A + GI+ Sbjct: 4 IVFDTETTGLDNTIDRVIEIGGVELW-NHIPTGKTYHQYIRPA-GRKVDPAAFDVHGISD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + L + E E + FFS + +N FD + R + Sbjct: 62 EFLLDKPLFE-EIADEFVAFFSDAK---LIAHNANFDIGFLNAELQRLRHPPIE-----P 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 + D L + R + +P L L ++ H A D Sbjct: 113 SLVIDTLAMARRKFPMAPA--------------SLDALCSRFAVDTSKREKHGALLDSEL 158 Query: 184 TLALV 188 + Sbjct: 159 LADVY 163 >gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 257 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 27/198 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G +VA DR + + ++V + E F + + GI+ Sbjct: 9 ICFFDLETTGVNVAKDRIVEISILKVFPDGRE----EEFTERINPTVPIPAVTTAVHGIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE ++ I+ + + G+N+ RFD R+ D Sbjct: 65 DADVADKP-TFAERAKEIYDIIKDSD--LAGFNSNRFDIPLLVEELLRSGID-------- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+ + + ++K + NAH A AD +AT Sbjct: 114 -------FDMKNRNAIDVQNIFHKMEQRTLVAAYKF-----YCDKDLTNAHSASADTWAT 161 Query: 185 LALVWLIREKKPKLFEYL 202 ++ ++ +L + Sbjct: 162 YEVLKSQLDRYDELENDM 179 >gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 2479 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 54/188 (28%), Gaps = 28/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G A DR + A V +D E + A I GI Sbjct: 2084 TYAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTL---INPMRDISNGA--IHGI 2137 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + I +N FD ++ F R Sbjct: 2138 TAKDVAVAP-TFDQVADDVAALLE---GKIFVAHNAIFDVRMLKSEFDRVGL-------- 2185 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 M + D ++ +S L GI + AH A +D A Sbjct: 2186 ----------KMAGLADGHIDTLRLAQNSLPISSRSLDSCLAFMGITNEQAHSALSDARA 2235 Query: 184 TLALVWLI 191 T L+ Sbjct: 2236 TGRLLTRF 2243 >gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] Length = 2493 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 54/188 (28%), Gaps = 28/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G A DR + A V +D E + A I GI Sbjct: 2098 TYAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTL---INPMRDISNGA--IHGI 2151 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + I +N FD ++ F R Sbjct: 2152 TAKDVAVAP-TFDQVADDVAALLE---GKIFVAHNAIFDVRMLKSEFDRVGL-------- 2199 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 M + D ++ +S L GI + AH A +D A Sbjct: 2200 ----------KMAGLADGHIDTLRLAQNSLPISSRSLDSCLAFMGITNEQAHSALSDARA 2249 Query: 184 TLALVWLI 191 T L+ Sbjct: 2250 TGRLLTRF 2257 >gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] Length = 1485 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + F KP +P Sbjct: 2 YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALI-EHQDFLIKPDGFDVPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A + GI+ Q A GV AE + ++ S + NI FD F+R Sbjct: 61 -DAEKVHGISTQLAETQGVPIAEVFKAFNEALSKAK--YVVGQNIGFDINIMGAEFHRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + S + V+ + + Q G +KL L G+ Sbjct: 118 VE----------SPLTQMPVIDTCTETTANLCQIAGGKGGR--YKLPTLTELHSFLFGVP 165 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + + Sbjct: 166 FAEAHNATADVEATTRCFFELIRR 189 >gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49] gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49] Length = 257 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 7/116 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D ET G ++A DR + A ++V K E F K I Sbjct: 5 LSKPICFFDLETTGINIAKDRIVEIAILKVFPNGNK----ESFVWKVNPTIPIPKVTSDI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 GIT + + + E + ++ + + G+N+ RFD R D Sbjct: 61 HGITDEMVVNEP-TFKELAPKVFALIKDSD--LAGFNSNRFDIPLLAEELLRAEID 113 >gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H] gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H] Length = 203 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 30/198 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +I D+ET G DR + V++ + + T Sbjct: 4 NSLIILDFETTGLSPDNGDRAIEIGAVKL-ENGVVTDRFQELMY---PGRPVSHFIADYT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E R F N + +N FD + + R S Sbjct: 60 GITNVMLSKAAPCH-EVMDRFSGFIQGQN---LVAHNASFDKRFLDSELKR------ISS 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKAD 180 +G LL R A + KL L GI + + H A D Sbjct: 110 GYDGQFACSLLLSRR--------------LYQTAPNHKLGTLINYKGIASNGSFHRALYD 155 Query: 181 VYATLALVWLIREKKPKL 198 T L + + + Sbjct: 156 SEMTAKLWVAMLDDIQQQ 173 >gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. 16M] gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M] Length = 272 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 14 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 73 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 74 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 110 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 163 Query: 184 TLALVW 189 LA++ Sbjct: 164 LLAVLK 169 >gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 447 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 35/246 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + I D ET G ++ + + + D + ++ + + + Sbjct: 1 MM--YTIIDVETTG---QTNKITEISIFKFDGD-KVVDEFTSL---VNPEDVIPYYITTL 51 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI AE ++++ I +N+ FD RN F D Sbjct: 52 TGIDNAMVANAP-TFAEIAQQVLDITED---TIFVAHNVNFDYNVIRNEFKAVDKD---- 103 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R L +R G S+ L L I H A+ D Sbjct: 104 ------FRRKKLCTVRLSRKLL----------PGHNSYSLGKLCKDLDIAIEGRHRARGD 147 Query: 181 VYATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AT+ L ++ K+ +F +K + + + ++ Sbjct: 148 AEATVTLFKILVNKEGSETVFNSFLKKTSKEGTLPSHLPTEVFNKIPNTPGIYYFKNKKG 207 Query: 239 LIAPVA 244 I + Sbjct: 208 KIIYIG 213 >gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47_FAA] gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 28/203 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MTN ++ D ET G + ++ + A ++V + F + Sbjct: 1 MTNSYIALDLETTGLEPKQEKITEIAALKV-VDGVISQRYVTF---VNPGRSLGAYITQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E I + +NIRFD + ++ + Sbjct: 57 TGITDGMLADAPPIE----ELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEF--- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + RA G T L + AH A+AD Sbjct: 110 ----EREGIDTLTLCRAF-------------MTGETRKNLSCACSYFHVPQSTAHRAQAD 152 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 A L + + + ++ Sbjct: 153 AEAAHLLYQELMSRHGQDQPSMF 175 >gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism HF4000_001N02] Length = 299 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 58/193 (30%), Gaps = 26/193 (13%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D DR Q+A + D S A I GI+ + Sbjct: 42 FDLETTGLDARKDRIVQYALIGSDVDG----SHINLASLVDPRRGIPTAASRIHGISEED 97 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 G E I + + I+G+N FD + R ++ + Sbjct: 98 VRGVGSFETHV-GAISELIE--DAVIVGHNISNFDWRFLELECMRAGVETPI-----PRA 149 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D + R + L L I AH A AD A+L L Sbjct: 150 IVDTYSLARKLRI--------------PGRRTLGVLCARYDISIGRAHSADADAGASLLL 195 Query: 188 VWLIREKKPKLFE 200 +W + P F Sbjct: 196 LWSMMHSHPAEFR 208 >gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 244 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARSGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F + Sbjct: 61 TEFLSDKPK-FAEIAHQILDFVKGAELII---HNAPFDLGFLDAEFALLGLPPFSEHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] Length = 929 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 32/189 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G D+ D +FA + ++ E E F + + +TGI Sbjct: 5 KIVVIDIETTGFDIYNDEIIEFAALCIEEG----EEAEAFSVLISPRRQVPERILRLTGI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +P++ + G + +I F II +N+ FD + +F Sbjct: 61 SPEELKQAG-SLQAYRDKILDLFQD---AIIVGHNVEFDLGFLEQALTIHF--------- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVY 182 N+ WD L++ R +Y +KL DL + G AH A D Sbjct: 108 -ENTLWDTLEIARILY-------------PNMPKYKLGDLTKSLGLTPLEKAHRALFDAR 153 Query: 183 ATLALVWLI 191 A L+ Sbjct: 154 AAWELLQAC 162 >gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22] gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces scabiei 87.22] Length = 613 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 28/182 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR + + +D Q + D P P V + G+T + Sbjct: 22 VDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTL---LNPDCDPGP--VHVHGLTADR 76 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 E E + ++ S ++ +N +FD + + F + SW + Sbjct: 77 LAGAPAFE-EIAPQVGALLSSR---VLVAHNAQFDYDFLAHEFAQV------RSWAPVSR 126 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + KL LA G+ AHDA+ DV + Sbjct: 127 RLCTLALNRLV-------------GPATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGI 173 Query: 188 VW 189 + Sbjct: 174 LR 175 >gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] Length = 939 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 28/194 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + + D ET G +VA DR QF V ++ + + + + Sbjct: 4 KDTYAVVDIETTGGNVASGDRMIQFGCVLLEGD-QVVHRFAT---NINPLTSIPKQIEHL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG++ + + E + + I+ + CII +NI+FD + R + + Sbjct: 60 TGLSNKTVAQAPYFE-DIAATIYNLL---DGCIIIAHNIQFDYTFLSAELQRCGMPALQN 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ + +S++L DL IEH N H A +D Sbjct: 116 ------KGIDTVELAQV-------------LLPTESSYRLNDLVSKFNIEHTNPHQADSD 156 Query: 181 VYATLALVWLIREK 194 T L ++++K Sbjct: 157 AAVTAELFLVLKQK 170 >gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma urealyticum gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 1442 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 55/378 (14%), Positives = 105/378 (27%), Gaps = 40/378 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F V + + ++I FF KP + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAV-IMQNNKQIGEKIQFFIKPI--QQINENVTNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I + F ++ +N I FD + + + Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 N D L + RAI F S +L + +AH A D Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDESAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + +++ F L + K Q L + + + L Sbjct: 562 IVLADVFKVMKNNLFNDFGITNLSEINTKLQTTMLKNRSFGNWINLYIKNQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ +DE + I+ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSIHESDLINALYSKNDE---EIKRLIQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P L + + + L+ L + Y Sbjct: 679 DFITLPSLGSQKH---LVYAKKITIENVQKAFKKLIYLALELNKIIIYSSSPYYFFKDDK 735 Query: 356 VDSQLYDGFFADVDRQIM 373 +Y + Sbjct: 736 KFYDVYVNTKGLEGKAHR 753 >gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 276 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 27/204 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V +D ET G +F V+ + E++ + F + I GI Sbjct: 11 TYVAFDTETSGAYPVGHDVVEFGAVK-WYKGEEVGRLQFLF---KPREPMTDFIIGIHGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ E R IH+FF I+ ++ FD + F +N Sbjct: 67 TNEMVADAPLI-TEKIREIHEFFK---GAIVMAHHAPFDLGFMAIDFEKNQLPLLPEP-- 120 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + KLQ L I+ AH A D A Sbjct: 121 -------ALCTSLLSRKWIHGVEN----------HKLQTLVRHLNIDGGQAHRAYDDAKA 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 L + K P ++ Sbjct: 164 CLHVGLACFAKMPPEMTLAGAIKS 187 >gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] Length = 212 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V+ D+ET G DR + V++ ++ + + T Sbjct: 13 HTVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGVVVDRFQGLM---NPGFRVSSFIENYT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E F C + +N FD + + Sbjct: 69 GISNRMLADA-ASCDEVMNEFANFIQ---GCNLVAHNASFDKRFLDGELALIQREY---- 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 D + + + A+S KL DL + IE+ H A AD Sbjct: 121 ------DGDFACSLLVSRRLTQE----------ASSHKLGDLVAYHQIENDGVFHRALAD 164 Query: 181 VYATLALVWLIREKKPKLF 199 T +L ++ E + Sbjct: 165 AEVTASLWLVLLETLEREH 183 >gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 256 Score = 88.7 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 79/255 (30%), Gaps = 29/255 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G D+ DR + + ++ K E + + Sbjct: 5 LTRPICFFDLETTGIDIGKDRIVEISVFKIFPNGNK----ESKTWLVNPTIPIPAQTTAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + E + +++ + + G+N+ RFD R D Sbjct: 61 HGITDEKVANEP-TFNELASQVYNMIKDSD--LAGFNSDRFDIPLLAEELLRAGVDFD-- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G D+ V + + L G NAH A+AD Sbjct: 116 --MKGRVSVDVQTVFHKMEERTLS----------------AALKFYTGKSLENAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239 AT ++ ++ P+L + +K+ D M + F + Sbjct: 158 TMATYEILKAQLDRYPELENDMKSLSEFTTRKKIADFAGMIAFDKDNEEVFTFGKHKGVK 217 Query: 240 IAPVAW-HPRYKDSV 253 + V P Y + Sbjct: 218 VNKVLETEPGYFSWI 232 >gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8] gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8] Length = 207 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 60/183 (32%), Gaps = 27/183 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F++ D ET G A +FA VRV +E + +P +TGIT Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRVGEAGA-LEREYTQVVR-TRGPVPS-FISRLTGIT 95 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + RDGV + F + ++N FD + + + Sbjct: 96 QAEVDRDGVP---VVQAFSSFLDFVEDLPVFFHNASFDRRFLGAAADQTGLPFANST--- 149 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R + S KL+ LA G H A ADV T Sbjct: 150 ----HCTLALARRAW-------------PELPSHKLEILARHVGAS-DPTHRALADVRTT 191 Query: 185 LAL 187 +A+ Sbjct: 192 VAV 194 >gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp. lactis AD011] gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp. lactis AD011] Length = 123 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 8/112 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ D ET G DR + V+V R + ++ +TGI Sbjct: 10 NYISLDLETTGFSAQNDRITEIGAVKV-RDGKIVDRFTQL---VNPGRRVSARITELTGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + V+E + F + +N +FD + R F Sbjct: 66 SNEMLEDQPVIE----DILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFR 113 >gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 198 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 30/205 (14%) Query: 1 MTNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + ++ V D ET G D + A ++V E E E Sbjct: 14 LPDNLVFLDIETTGLDPEKGANIVEIAMLKVC--GGIEERYESL---VNPGLPIPSECSK 68 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I I E + + F ++ +N FD + Y Sbjct: 69 IHAIYDDMIKNSP-SFDEIAGNVFSFI---GHSVVVCHNAPFDLLFVYRELYLAGVPVKN 124 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D L + R ++F S KL ++A A GIE H A A Sbjct: 125 IRY------IDTLKLARQYFSFD--------------SNKLGNIADAIGIEAELRHRAMA 164 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 DV ++ I + + + Sbjct: 165 DVLTMFSVAKYIFANMYRKDINMIE 189 >gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] Length = 168 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 42/188 (22%), Gaps = 26/188 (13%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 N ++ D ET G V R + V V + A + Sbjct: 1 MNRVIVVDTETTGLSVRNQGRVIEIGAVAV-ENGQITAELATL---INSGTPISYGAYRV 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ Q E +F + +N FD + + + Sbjct: 57 HGISEQMLAGRPTP-QEVWPWFLEF---AGNSPLVAHNAAFDRAFINHELHLLGMS-LAN 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W + P + + L E V H A D Sbjct: 112 PW---------------HCTVRLSRRKLPRLMNHKLETVYKHLFGEL-PEEVQRHRALDD 155 Query: 181 VYATLALV 188 + Sbjct: 156 ARMAARVW 163 >gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA] gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA] Length = 260 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 27/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + ++ I Sbjct: 7 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNSNE----ETKTMRINPEMHIPEQSSAI 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + + G+N+ RFD F R D Sbjct: 63 HGIYDADVADCP-TFKEVAKEIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+M+ + + + ++K G +AH A+AD Sbjct: 116 -----------IDMMKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 AT ++ ++ P+ + + Sbjct: 160 TRATYEVLKSQLDRYPEELQNDMAF 184 >gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1] gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22] gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1] gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bacteroides xylanisolvens XB1A] gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22] Length = 259 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 78/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + T + + + I Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ I + + G+N+ RFD F R Sbjct: 61 HGIYDADVADCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ F + + + S + N +AH A+AD Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEAD 157 Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ + + + + + + M + +F + Sbjct: 158 TRATYEVLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VAEVLKKDPGYYSWIL 233 >gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 244 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 25/189 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + V + + + +VF D +PEA+ + GIT Sbjct: 9 IIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLS--PDGKKVNPEALKLHGITD 66 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + FF+ N I +N FD + R D + Sbjct: 67 EFLRDKP-FFSAIFPEFWDFFNDKNAEWIAHNAK-FDVGFINAELQRINKDPL-----DP 119 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYA 183 + D L + R + ++ L L G I H + H A D + Sbjct: 120 SRIVDTLSIARRKHP--------------SSRNDLNSLCKRYGITISHRSKHGALLDSHL 165 Query: 184 TLALVWLIR 192 + + Sbjct: 166 LADVYVQMM 174 >gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] Length = 252 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 26/205 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ I D ET G D+ + ++ ++I+ DY+P+ T I Sbjct: 60 NYTIIDVETTGLKPREDKIIEIGAIKYRDN-KEIDYFSTL---VKVDYIPN-FISSYTNI 114 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + V+ E ++ + F + ++GYN + Y S Sbjct: 115 TNKMVKNAPRVD-EAIKQFYDFV--GDDILVGYNVPFDIKFLYDA--------LYEVSNG 163 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +DVM D +K +A I N H A D Sbjct: 164 ELLLNNDFIDVMYIAKRVLKDLEN----------YKQVTVASYYNISIDNLHRAMGDCKL 213 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208 A+ +++ + + + K Sbjct: 214 CSAIYECLQKDILEKWGAFNKFYKK 238 >gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 1442 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 52/387 (13%), Positives = 111/387 (28%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I FF KP + + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E +I + F N ++ +N I FD + + Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFD--NHILVAHNGISFDINFINQRLLKWGLKPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L + RAI F S +L + +++ + AH A D Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ FE + + +L+ L+ + + L Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ L + Y Sbjct: 679 DFITLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family [Gordonibacter pamelaeae 7-10-1-b] Length = 1031 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 30/188 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + V+ D ET G D Q A R+ Q ++ F + ++T I Sbjct: 46 NIVVVDTETTGFSFNHDELTQIAAARM-EQGRIVDWFITF---VNPGKPIPEDVAYLTDI 101 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +E + +F I +N FD ++ + + Y +W Sbjct: 102 HDEDVADAPLP-SEALSELAEFVGDAK---IVAHNAEFDRTFTTR--HPSGYPLLENTW- 154 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D LD+ R S +L DL A G H A ADV A Sbjct: 155 -----IDSLDLARIA-------------LPRLKSHRLLDLVKAFGAPLST-HRADADVEA 195 Query: 184 TLALVWLI 191 T ++ ++ Sbjct: 196 TCSIFRIL 203 >gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC 35110] gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 578 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 27/196 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G +R + ++ R +++ + + TGI Sbjct: 23 TFAVVDLETTGGLKPENRIIEICAIKC-RNGQEVG---MLESLVNPEQQISYFISQYTGI 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T V+++ ++ +FF I +N+ FD + RN Y W Sbjct: 79 TNSMVDNAPVIQS-LLTKVSEFFQE---TIFVAHNVPFDMGFINMELERNGYAKLTNRW- 133 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L R P + L DLA GI N H A+ D A Sbjct: 134 --------LCTFRLARRLLPTQQK----------KNLGDLAKYFGIIVENRHRARGDCEA 175 Query: 184 TLALVWLIREKKPKLF 199 T+ L+ + + Sbjct: 176 TIKLLAELIILAQEQH 191 >gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 472 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 69/218 (31%), Gaps = 30/218 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T F + D ET G V R + + V E ++ + +T Sbjct: 5 TEKFTVIDVETTGG-VGQGRMTEICIITV-ENMEIVDVWSSL---INPEIYIPQHITALT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q + + I + I +N+ FD + + F R Sbjct: 60 GITDQMVTDAPR-FCDVAAIIEEKTRD---AIFVAHNVNFDYGFLKKEFDLIGASFSRKK 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L +R G S+ L L + GI ++AH A+AD Sbjct: 116 ----------LCTVRLSRKL----------IPGLPSYSLSKLCRSIGISLLDAHRAEADT 155 Query: 182 YATLALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQ 218 AT L + EK FE ++ NK+ + Sbjct: 156 RATTTLFLQLLEKDSVANFEVFLNFLNKSSREATLPPH 193 >gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 9/112 (8%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G A DR + A V V ++ + + Sbjct: 1 MEAVAVIDFETTGLSPAQGDRATEIAAVIV-EDGRVVDRYQSLM---NAGVRIPAYIEAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 TGIT + E R + F I +N FD + R Sbjct: 57 TGITNAMVRSAPLA-GEVMRDVSDFV---GDMPIVAHNASFDAKFWDAELGR 104 >gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125] gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125] Length = 219 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 62/218 (28%), Gaps = 32/218 (14%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F ++D ET G V A DR + A V V E + F + E +TGI Sbjct: 27 FTVFDTETTGFAVGAGDRLIEVAAVHV-EGLEVTD--FTFQTYVNPERNIPAEIEELTGI 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + K +F + + FD + R Sbjct: 84 SEDKVKNAPASLP-AIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQR------YQFSL 136 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N +D LD++ L+ A G H A D Sbjct: 137 NVPLLFDTLDLI-------------GYISPSKDMRDLEVYAKQFGTYIYERHQALGDALT 183 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 T L + + R K L LIDI +MT Sbjct: 184 TAHLFCELLRH--------LEARGKTTLADLIDISSMT 213 >gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] Length = 233 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 16/194 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D E G D VR+ + + F+ + I IT Sbjct: 42 FVVFDTELTGLKQRRDEIIAIGAVRI-KNARICFE-DTFYALIKPQGKLYTPSTLIHRIT 99 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + +E E R F + +++ D + + Sbjct: 100 PGELRGAEPIE-EVLPRFIDF---CGGAFLVGHHVSLDLGFVNRACQN---------YLG 146 Query: 125 GNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G + LD +R A+ + S+KL L+ + H+A D Sbjct: 147 GVIKSPSLDTLRLARAYKTSLNGPHLDHQEQQDSYKLSSLSDEFHLPKFAEHNALQDALQ 206 Query: 184 TLALVWLIREKKPK 197 T L + K Sbjct: 207 TAYLFIYLIHKMRN 220 >gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] Length = 936 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 29/202 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63 F + D ET G DR QF + + + I++ F P D P+AV +TGI Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAII-KNRQIIKTY-SFLINPKADI---PQAVQNLTGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + V F+ +I + +NI FD + N + Sbjct: 65 KPADVVNQPV-FKNFATQIEDILQD---TVFVAHNINFDLPFLNAELAANGFP------- 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +R + + + S++L DL + ++H N H A +D YA Sbjct: 114 ----------KLRNRAIDTVELSKI--AFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYA 161 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T +L+ I +K L + + Sbjct: 162 TASLLLKILDKLESLPQSTLNT 183 >gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 239 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 57/195 (29%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V V + F + EA+ + GIT Sbjct: 4 IVLDTETTGIDPKEGHRIIEIGCVEV-VNRRLTGNH--FHVYINPGRHIEQEAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ ++ F + +N FD + + F + Sbjct: 61 NEFLADKP-TFSQVAQEFVSFIK---GAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQI 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R ++ + L L GI+ H H A D Sbjct: 117 -CDVLDTLTLARQMHPGQKN--------------NLDALCKRYGIDNSHRTLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + L+ + K Sbjct: 162 ILADVYLLMTGGQTK 176 >gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159] gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159] Length = 982 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 62/189 (32%), Gaps = 34/189 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59 M +V D E G D D + A ++ + E +E E +P P P AV Sbjct: 1 MPRIYVALDIEATGMDPERDEIIEVAAIKFREE-EVLERFETL-VQPRR---PVPLAVAS 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG+T + R + + R+ QF I + +D Sbjct: 56 LTGLTMRDLRRAP-SFQQIAPRLRQFVRN---YPIVGQSPDYDLQMLSAH---------- 101 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R + D R PD ++ L +A GI H A A Sbjct: 102 ----GLELRNPVYDTFRLATILLPDL----------PAYSLAGIAARLGISVAQQHRAMA 147 Query: 180 DVYATLALV 188 DV T+A+ Sbjct: 148 DVETTMAVF 156 >gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] Length = 456 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 86/335 (25%), Gaps = 36/335 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D ET G + + A + D + + IE E + +TGI Sbjct: 3 FAIVDIETTGGAASTCGITEIAILIHDGE-KVIEEFESL---INPEQDIPTYITGLTGID 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E E S ++ + + +++ FD + R F + Sbjct: 59 NSMVSDAPTFE-ELSDKLWDLL---HGRVFVAHSVNFDYGFVRACFNAIGRE-------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L +R G +S+ L + I + H A D AT Sbjct: 107 --FKVDKLCTVRLARKI----------IPGLSSYSLGRICETQKIPILARHRAMGDARAT 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLI---DIQNMTPLVHVSGMFGASRSNTALIA 241 L + +K + + P + N + Sbjct: 155 AILFDQMLKKDSQTVFQALKKNSGEAFLPPNFPITKYRKIPEACGVYYMMNEKGNVVYVG 214 Query: 242 PVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 + L DL E + + K + Sbjct: 215 KAINIKERFKNHFSGQLLPSLKQKLKEEVVDLKWEITGTEFLALLLEALEIKRIWPKYNN 274 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL 331 K P M + +++ + ++L L Sbjct: 275 ALKLPKTMWGLFHYEDNSGFSRFQIAKVTKHLRPL 309 >gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 248 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 53/193 (27%), Gaps = 28/193 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V+ D ET G D DR + V + + + + +A I Sbjct: 4 SQRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSY---VNPERPVPADATAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V A + I +F + +N FD + F Sbjct: 61 HGITDEMLKDAPV-FAAVAADIVEFIADSPAIF---HNAPFDLGFFDLEF---------- 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 G LD R + P+ L L GI+ H A Sbjct: 107 ----GLLSLPSLDRSRVTDSLVHARKLLPAGAKA----GLDALCNRYGIDRTRRTKHGAL 158 Query: 179 ADVYATLALVWLI 191 D + + Sbjct: 159 MDSELLADVWLAM 171 >gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 254 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 18/208 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D+ DR A V ++ + + EA I GI+ ++ Sbjct: 11 FDLETTGIDIESDRIVTAALVFLEPDGRVSDE---RTWMLDPGVVIPEEAAAIHGISTEQ 67 Query: 68 ALRDGVVEAEFSRRIH---QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + GV I T ++ N R+D R+ Sbjct: 68 ARKHGVPAGPAVAEISTAVAQLLRVGTPLVIMNA-RYDLSLLDRECRRHQVAPLSARQ-- 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G ++D + + LQ L G+ +AHDA++D A Sbjct: 125 GARLHPVIDPLVLDKH---------ADRYRKGRRTLQALCAHYGVPLDSAHDARSDAVAA 175 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR 212 + I E+ P + ++ Q+R Sbjct: 176 ARVARRIGEEHPSIGTVGLAELSEVQVR 203 >gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon phaeoclathratiforme BU-1] gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon phaeoclathratiforme BU-1] Length = 190 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 27/201 (13%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++ +D ET G R Q A + D + ++ S + KP +P Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAII-KPEGFVIPS 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 AV I GI+ Q+AL +G + + ++ + ++ +NI FD+ + R Sbjct: 61 -SAVQIHGISTQRALLEGKPLGQVLQSFYELVADAE--VLVAHNISFDEKIVGSELIRAG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVN 173 S + + P G +WP KL +L G Sbjct: 118 MP---NSLPSKRKICTMESTTDFCAIKGPYGNKWP---------KLSELYFQLFGTVFNE 165 Query: 174 AHDAKADVYATLALVWLIREK 194 AH+A +D+ AT W ++ + Sbjct: 166 AHNAASDIQATAKCFWELKRR 186 >gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 235 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 32/198 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G + A R + V E + F D D A+ + Sbjct: 9 VVLDTETTGLEPAQGHRIIEIGCV------ELVGRRITRRTFHHYLQPDREIDEGALAVH 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + F+ + +F + +N FD + + D+ R Sbjct: 63 GISNEFLADKPR----FADVVDEFLEFIRGAELVIHNAPFDVGFLDHELK--LLDAARGQ 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 + +S D LD+ R ++ + L L I++ H A Sbjct: 117 VTDYSSILDTLDLARRMHPGQRN--------------SLDALCKRYQIDNSGRELHGALL 162 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 163 DARILADVYLAMTGGQTT 180 >gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 1442 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 55/378 (14%), Positives = 107/378 (28%), Gaps = 40/378 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F V + + ++I FF KP + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAV-IMQNNKQIGEKIQFFVKPI--QQINENVTNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I + F ++ +N I FD + + + Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L + RAI F S +L + +++ + AH A D Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEIAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + +++ F L + K Q L + + + L Sbjct: 562 IVLTDVFKVMKNNLFNDFGITNLNEINTKLQTTMLRNRSFGNWINLYIKNQANVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + L L++ +DE + I+ Sbjct: 622 VSISHTDMYYTRPTITTGFLANKKDKLIISNSIHESDLINALYSKNDE---EIKRLIQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P L + + + L+ L + Y Sbjct: 679 DFITLPSLGSQKH---LVYAKKITIENVQKAFKKLIYLALELNKIIIYSSSPYYFFKDDK 735 Query: 356 VDSQLYDGFFADVDRQIM 373 +Y + Sbjct: 736 KFYDVYVNTKGLEGKAHR 753 >gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1] Length = 203 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 60/217 (27%), Gaps = 40/217 (18%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G + R + A V + +E + + Sbjct: 1 MERIAVIDFETTGISPSSSCRATEIAVVML-ENGRIVERYQSLM---NAGVRIPAFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + +++F + +N FD + R Sbjct: 57 TGISNAMLRTAPSAE-KVMNEVNEFV---GCTPLLAHNAAFDQKFWDFELGRI------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + F+ + A + KL L + H AH A A Sbjct: 106 -------------KRTRLQNFACSLLLARRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 D L+ + + R+K+ + +L Sbjct: 153 DAEMAANLMVHLAG----------ELRDKHGVSELSH 179 >gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] Length = 1446 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +FV++D ET G + + V++ + +E + +T Sbjct: 418 ENFVVFDLETMGLNSHEHEIIEIGAVKL-QGTRIVERYSQL---VNPKKTIPKKIQELTN 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +E E + +F + +N FD + R + Y Sbjct: 474 ISQDMVDNMPTIE-EVLPKFMEFV---GDSTMVAHNAPFDMGFIRRDVKKIMGYDY---- 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L + R +Y ++ L++L G+ N H A D Sbjct: 526 --KPAVIDTLQMARDLY-------------PELKAYGLKNLNKVLGLSLDNHHRAVDDSQ 570 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT + + EK ++ + Sbjct: 571 ATANMFIIFIEKYMEMGITNLN 592 >gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4] gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4] Length = 243 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + T + + + I Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E ++ I + + G+N+ RFD F R Sbjct: 61 HGIYDADVVDCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ F + + + S + N +AH A+AD Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEAD 157 Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ + + + + + + M + +F + Sbjct: 158 TRATYEVLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VAEVLKKDPGYYSWIL 233 >gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] Length = 855 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 25/217 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G + D Q AG++++ + E IE E F P ++ + G Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLT-PKKYV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q G + + +F ++ +NI FD + R Sbjct: 549 FSDQFLKEKGEDKERVLKDFLEFVKD---TVVIGHNITFDITILNSELQRLGL-----EK 600 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 601 ANFKTYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 AT ++ ++ ++K + ++K I Sbjct: 648 ATKDVLMVMLKEKVEPTIINRMAVYGKYIKKFQPIYE 684 >gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] Length = 243 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQVGAHYEGHRIIEIGAVEV-INRRLTGR--NFHVYLKPDRLVDPEAFMV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ L A+ +F + +N FD + F + D + Sbjct: 66 HGISDDFLLGQP-SFADVVDEFLEFIRGAE---LVIHNAPFDIGFMDYEFAKLGRDLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + ++ + Sbjct: 166 LDAQILADVYLIMTGGQTS 184 >gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] Length = 1485 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + F KP +P Sbjct: 2 YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALI-EHQDFLIKPDGFDVPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A + GI+ Q A G+ AE + ++ S + NI FD FYR Sbjct: 61 -DAEKVHGISTQLAEAQGLPIAEVFKAFNEALSKAQ--YVVGQNIGFDINIMGAEFYRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + S + V+ + + Q G +KL L G+ Sbjct: 118 VE----------SPLTQMPVIDTCTEATANLCQIAGGKGGR--YKLPTLTELHSFLFGVP 165 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + + Sbjct: 166 FAEAHNATADVEATTRCFFELIRR 189 >gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 228 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 26/203 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G D+ R A V+V + ++ I+ F + E++ IT Sbjct: 45 FSVIDTETTGLDLNDARIINVAAVKV-QNFKIIDFYNSF---INPETEIPKESIQWHNIT 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + + II +++ FD +F +W + Sbjct: 101 DEMVADKPT----AGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLD 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + L L + H A D AT Sbjct: 157 TMLIYS------------------HAIIKKDERYSLDYLLDLYNVTCNGRHTALGDALAT 198 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + + + F+ + + + Sbjct: 199 AEVFTKMIMQASREFKTVRELCD 221 >gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 185 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 27/189 (14%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +++ D ET G DR + A + V KI F + + Sbjct: 1 MKKIYLVIDTETTGSSPLEGDRILEIAAIPV--YGNKILHNLSFQSLVNPLVMIPAQITG 58 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I G+ + L + + +F + I +NI D + Sbjct: 59 IHGLKNEDVLDEPT----MAEVFPRFRNYVGGATIVGHNIVNDMTFFDIASKETGILPLA 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ D +D+ ++ + L+ +A I V H A Sbjct: 115 NNY------IDTIDIAHEVF--------------SEGPYGLKSIAKRLRIRDVPTHRAMD 154 Query: 180 DVYATLALV 188 D T + Sbjct: 155 DARVTAKVF 163 >gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3] gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3] Length = 222 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 62/228 (27%), Gaps = 30/228 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ D+ET G DR + V++ + ++ + + TG Sbjct: 23 TVIVLDFETTGLSPNQGDRAIEIGAVKL-QHGIVVDRFQELM---NPGFRISGFIESYTG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ Q E E R F + N + +N FD + + Sbjct: 79 ISNQMLNNAAPCE-EVMERFADFIADYN---MVAHNASFDQRFLDAELNSIGREY----- 129 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADV 181 R + M + A + KL L I+H H A AD Sbjct: 130 -----RGEFACSMLIARRLYQE----------APNHKLGSLINYKQIKHDGVFHRALADS 174 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 T L ++ + Q N+ ++ Sbjct: 175 EMTADLWLVMLNDLKRDHNIQEPEFKLMQAITKQTKANVQKYLYNYSR 222 >gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6] gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14] gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6] gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14] Length = 259 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 79/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + + + Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEASSAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ + + + G+N+ RFD F R Sbjct: 61 HGIYDADVADCP-TFKEVAKNVARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ F + + + S + +AH A+AD Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCEK---SLEDAHTAEAD 157 Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ ++ P + + + + + M + +F + Sbjct: 158 TRATYEVLKAQLDRYPDLQNDIAFLAEYSSFTKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VAEVLKKDPGYYSWIL 233 >gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] Length = 890 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 88/285 (30%), Gaps = 31/285 (10%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D ET G DR Q V +KI Sbjct: 1 MPVKYAVVDLETTGTKYNRGDRIIQIG-VVFLEGQKKIGEF---KSNIQPLIPVPKNISD 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI + + E + + + Q C+ +NI FD + F + Sbjct: 57 LTGIQTEDLRDAPLFE-DIAPDLFQQLQD---CVFVAHNINFDYKFLSASFEGVGLPALD 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D ++++R +Y A S+KL D +L +GI V AH A Sbjct: 113 LE------GIDTVELIRVLY-------------PQAASYKLGDFSLDHGINLVKAHTAIE 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 D AT L+ + +K L E LY K Q+ + R+ + Sbjct: 154 DARATAQLLVQVMDKVASLPESLYKAM--QPWLKFFIRQSGKYFSYWYNHVHCQRNRGLI 211 Query: 240 IAPVAWHPR-YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 +P + + + + L + F + E Sbjct: 212 RGSFTLNPEINEGLYRPLAGTEEDQDSGHLSIQEDVMDFFDQNSE 256 >gi|229138336|ref|ZP_04266930.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST26] gi|228645101|gb|EEL01339.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST26] Length = 99 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 10/107 (9%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ +V+ D ET G D+ Q A V V E +E F P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 +TGI + + E + + + + +N+ FD + Sbjct: 57 ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNF 99 >gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] Length = 236 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 29/195 (14%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I+D ET G D DR + V V + E Sbjct: 1 MSKREIIFDTETTGLDPRGGDRVTELGCVEV-IDLIPTGK--DLRILINPERDIPAEVTA 57 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG T + + AE + F + +N FD + R Sbjct: 58 VTGHTWEMLKDEPK-FAEIVDQFLDFIEDS---TLVAHNAMFDMGFINMELERCGKPI-- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + R I + ++P L L + + H A Sbjct: 112 ------------IPKARFIDTAAIAREKFPGAPA-----SLDALCKRFDVSLDSRTKHGA 154 Query: 178 KADVYATLALVWLIR 192 D Y + + Sbjct: 155 LIDSYLLAEVYLELN 169 >gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] Length = 442 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 75/251 (29%), Gaps = 32/251 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + A + + E + + +TGI Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQFNGH-EITDQFISL---INPERPIQEFVTKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + + CII +N FD + F R YD Sbjct: 58 NKMLRNAPK-FYEVAKRIVEITTD---CIIVGHNAAFDYRILQTEFRRLGYDF------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + S+ L L + GI + H A D AT Sbjct: 107 -------------VRTTLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTALIAP 242 L L + EK K + + K +R + +++ L + + + + Sbjct: 154 LKLFKYLLEKDTK--KDIITTSVKQDIRLEMASRHLKILDTLPETLGIFYMHNEEGKVIY 211 Query: 243 VAWHPRYKDSV 253 + H K V Sbjct: 212 IGKHKNIKQQV 222 >gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis ATCC 33269] gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis ATCC 33269] Length = 284 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 24/188 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ D Q + ++V ++ E +F E + Sbjct: 5 LTKPLIVFDLETTGLDLVNDHIIQISYIKVYPDGKE-ERENIF---VNPGISIPEEVTLL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI E + + + F GYN+ FD F R D Sbjct: 61 TGIGNDDVKDAP-TFKEIASSLCEKFK--GCDFAGYNSNHFDIPMLAEEFLRAGID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D + + + A ++K E AH A D Sbjct: 114 -----------FDFAHCRLIDAQTIFHKMEKRNLAAAYKFY--CGRKMEEDFEAHRADQD 160 Query: 181 VYATLALV 188 AT ++ Sbjct: 161 TEATYKVL 168 >gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 244 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 58/205 (28%), Gaps = 27/205 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 LILDTETTGLNARTGDRIIEVGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F + I +N FD + F + Sbjct: 61 TEFLSDKPK-FAEIADEFRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TH 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 + + + L + + Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184 >gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472] gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472] Length = 207 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 51/202 (25%), Gaps = 30/202 (14%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G D R + V ++ P Sbjct: 1 MRQRVAVIDFETNGATPGGDCRATEIGVAMV-EDGRVVDRFHSLM---NAGVWVPPMIER 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E R F + +N FD + Sbjct: 57 LTGISNAMLKDAPPAER-VMRDAAHFV---GDAPLAAHNAGFDRKFWDYELGLLGL---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178 + R D + A KL LA G + AH A Sbjct: 109 ------SRRQDFACTLLLSRRLL----------PQAPDHKLGTLARWAGLPDTGRAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLFE 200 AD L+ L+ + + F Sbjct: 153 ADAEMAAQLMLLLGDTLSRQFH 174 >gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus 4H-3-7-5] gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus 4H-3-7-5] Length = 257 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 78/254 (30%), Gaps = 35/254 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G +VA DR + + ++V + E F + + GI+ Sbjct: 9 ICFFDLETTGINVAKDRIVEISILKVFPDGRE----EEFTERINPTVPIPAATTAVHGIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A ++ ++ + + G+N+ RFD R+ D Sbjct: 65 DADVVDKP-TFAARAKDVYDIIKDAD--LAGFNSNRFDIPLLVEELLRSGID-------- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+ + + ++K G + NAH A AD +AT Sbjct: 114 -------FDMKNRNAIDVQNIFHKMEQRTLVAAYKF-----YCGKDLTNAHSASADTWAT 161 Query: 185 LALVWLIREKKPKLFEYL-----YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 ++ ++ +L + + R K + + + + + Sbjct: 162 YEVLKSQLDRYDELENDMKFLGDFSTRKKQADFAGFIGYDKDDVEIFTFGKHKGKKVEEV 221 Query: 240 IAPVAWHPRYKDSV 253 + P Y + Sbjct: 222 ---LDNEPGYFGWI 232 >gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] Length = 268 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 29/199 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 D ET V + + + + + E +++ + P + + +TGI Sbjct: 79 KLCFVDIETTSASVKNGQIIEIGAI-IAQNGEILDTFDTLVYSP----FVPEDIIDLTGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +E + ++ F + +N+ FD + + Sbjct: 134 DSYMLEDAPRLE-QVLKQFRAFL---GDSVFVAHNVSFDYNFIAESLHEYDMPPLFN--- 186 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R LD+ R R + + L L GI AH A AD Sbjct: 187 ---PRLCTLDLSR--------------RTIVSKKYALAYLNDMLGINTAQAHRAYADALT 229 Query: 184 TLALVWLIREKKPKLFEYL 202 L + + PK + L Sbjct: 230 AFRLYEICMQSLPKEVKTL 248 >gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 797 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 77/232 (33%), Gaps = 28/232 (12%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV+ D ET G V R Q + ++ + ++ E F L D + +T Sbjct: 5 DTFVVVDLETTGHSVKKGGRIIQIGMTFI-KKRQIVDHFESF---VNPGQLIDRQIQQLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ + E E + + +I +N+ FD Y + F R + Sbjct: 61 HISQKDVQNAPYFE-EIAPLLQNLLQN---TVIIAHNVNFDYPYLNDEFERTGFPLL--- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ D + + + A ++L DL I NAH A AD Sbjct: 114 ---KSAAIDTVQLAQI-------------LFPTAPGYRLLDLTTYLNITLKNAHRANADA 157 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 +AT L +K +L + + L Q LVH Sbjct: 158 HATALLFLKFWKKLEELPDITLKQLQQGDWPLLRQTQQFLKLVHSKNKQNFG 209 >gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp. novicida GA99-3549] gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549] gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1] Length = 230 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V +T F+C P Y + A+ I G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNTLHFYCNPN--YEVEAGALAIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 62 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQN 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 118 VARIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192 >gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus asymbiotica] Length = 248 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 30/198 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + + V V + KP D L DPEA + Sbjct: 9 VVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRHFHIYVKP--DRLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A+ + +F I +N FD + F + D Sbjct: 66 HGISDEFLQDKPL-FADIADEFIEFIRGAELII---HNAPFDIGFMDYEFGKLNRDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + RA++ L L I++ H A Sbjct: 122 T--DFCKVTDSLQLARALFPG--------------KRNNLDALCDRYDIDNSQRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKP 196 D + ++ + Sbjct: 166 LDAEILADVYLIMTGGQT 183 >gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 59/190 (31%), Gaps = 19/190 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D + A +RV + + E T V +P DPEA+ + Sbjct: 1 MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDADPEALEVN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G Q+ D V E + ++ +N+ FD + + + Sbjct: 61 GY-HQRVWVDAVSLDEALAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRP---- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N LD + G S L + G+ H A DV Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161 Query: 182 YATLALVWLI 191 A L + + Sbjct: 162 RACLGVARRL 171 >gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 242 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + DPEA+ Sbjct: 11 VILDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRYYHQY--INPGQAIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ + + ++ F S I +N FD + + F + Sbjct: 68 VHGITDERVANEPRFH-QIAQEFIDFISGAE---IVAHNANFDVSFMDHEF--SLLQPLG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + D LD+ + ++ + L L GI++ H A Sbjct: 122 PKTRDICEILDSLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRHYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + + + K Sbjct: 168 LLDAEILADVYLSMTGGQTKF 188 >gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] Length = 194 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 22/191 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ + D ET G A D + + V + E + + V +P P+A+ + Sbjct: 21 LKHNPIYLDTETTGLS-AQDEIIEISIV--NDNGEVVYESLVRPTRP-----IPPDAIAV 72 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + + + ++ N FD + R Sbjct: 73 HGISNEDVQKA-RPWHIVWQEVRPILLNAG--VVVIYNEEFDLRMMQQSHARLGLPW--- 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R+ D+M+ + + W + L GI NAH A AD Sbjct: 127 -----RDRFRTFDLMKLYAEYYGE---WDPKRRAYRYHSLDAAGKHCGITLPNAHRATAD 178 Query: 181 VYATLALVWLI 191 T AL+ + Sbjct: 179 TLLTRALLHFM 189 >gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] Length = 281 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 47/193 (24%), Gaps = 29/193 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G LDR + + VDR + P +TGIT Sbjct: 45 LAFVDLETTGGRPGLDRITEVGVIEVDRDG--VRRWSTL---VDPLQPIPPFVQQLTGIT 99 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I +N + + + + Sbjct: 100 DAMVRGAP-TFDALAAELARRLD--GKLFIAHN-----------ARFDHGFLKKAFEQIG 145 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L LA + H A AD Sbjct: 146 IRFDPDVLCTVRLSRALF----------PRESRHGLDALAQRLDLSACGRHRALADADLV 195 Query: 185 LALVWLIREKKPK 197 + P+ Sbjct: 196 WQFWQRVHALHPR 208 >gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] Length = 220 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 62/202 (30%), Gaps = 24/202 (11%) Query: 4 HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F I+D ET G + DR + AGVRV E E F D + +TG Sbjct: 27 TFTIFDTETTGFAINGADRMIEIAGVRV-AGLEVQEQ--TFQTFVNPDREIPEKITSLTG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +K E R QF ++ + + + FD + R+ Y Sbjct: 84 ISGEKVKDAPSSL-EALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLRHKYTY----- 137 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D LD++ + L+ AL G H A D Sbjct: 138 -DTPLVVDTLDLI-------------GYLNPSRDMRDLEVYALQFGTLVYERHQALGDAM 183 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T L + + Sbjct: 184 TTAHLFCELMRHLEDRGKTTLA 205 >gi|288560027|ref|YP_003423513.1| exonuclease [Methanobrevibacter ruminantium M1] gi|288542737|gb|ADC46621.1| exonuclease [Methanobrevibacter ruminantium M1] Length = 261 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 29/240 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N + +D ET G + + + + + + IE + D ITG Sbjct: 44 NRIIFFDTETSGLNPNYCKIIELGMLVI-EDGKIIEEYDKL---INIGERIDSTITRITG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +GV E + ++ + + + ++ N +FD ++ + R+ + Sbjct: 100 ITNDMLIDEGVSEGDVAQDLKEKL--ISGTLMIAYNCQFDLSFAYGLLKRH--YPHEAEA 155 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +W + P K D I +VN H A D Sbjct: 156 IIEDVKWLDPMTVFKDRKAYP--------------HKFSDAVEHYDIRNVNFHRAIGDAK 201 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + +++++ L EY+ + + L + N ++++P Sbjct: 202 GLYEVCLSLKDERDDLGEYI-------NVFGYNPRYGINGLKFPFIEYKKHYYNDSMVSP 254 >gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 236 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 57/197 (28%), Gaps = 33/197 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G D R + V E +E T + + EAV I Sbjct: 4 IVLDTETTGIDPNEGHRIIEIGCV------ELVERTLTGRNYHVYVNPGREVEAEAVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + A + +F + +N FD + F R Sbjct: 58 GITNEFLADKPL-FAVVADEFFEFIRGAE---LVIHNAAFDVGFMDAEFGRL---DGGRK 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + + L L G+++ N H A Sbjct: 111 TAEHCGIVDTLAIARKRHPGQKN--------------NLNALCKRYGVDNSNRELHGALL 156 Query: 180 DVYATLALVWLIREKKP 196 D + L+ + Sbjct: 157 DAEILADVYLLLTGGQT 173 >gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2] gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2] Length = 247 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G + R + V + ++ + + D A+ + GI+ Sbjct: 4 VVLDTETTGLEPNDGHRVIEIGCVEM-ENRRLTGNSLHLY--LNPEREIDAGALAVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F + + +F + + + +N FD + + R Sbjct: 61 SEFLADKPT----FDKVVDEFLAFVDGAELVIHNAPFDVGFLNHELRRLGTRYGTIEQR- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R + + L L +E H H A D Sbjct: 116 -CGVLDTLVMARQKHPGQKN--------------SLDALCRRYFVENGHRELHGALLDAE 160 Query: 183 ATLALVWLIREKKPKLFE 200 + + + +LF Sbjct: 161 ILADVYLAMTGGQTRLFS 178 >gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM] gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 254 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 28/239 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 I+D ET G +++ DR + ++V+ S E + A + G Sbjct: 7 KPLCIFDLETTGTNISKDRIVEICILKVNPD----ASRETKTWLVNPEMHIPAFATAVHG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + E + +I + S + G+N+ RFD R D Sbjct: 63 ISDEDVKDAP-TLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVD------ 113 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +DL + +AH A+AD Sbjct: 114 ------FDLSKMKLVDAQV--------IFHKMEPRNLSAAYQFYCNKTLEDAHSAEADTL 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALI 240 AT ++ K +L + + + +K D+ +F + L+ Sbjct: 160 ATFEVLDAQVGKYEELPKDINGLSEFSYHQKFADLAGFIAFDDKGQEIFTFGKYKGQLV 218 >gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5 str. 513] gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5 str. 513] Length = 332 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383] gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383] Length = 205 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G + DR + A + + R + ++ + + V + Sbjct: 1 MQTVAVLDFETTGLSPNMGDRATEIAVILL-RDGQVVDRFQSLM---NAGRRIPSDVVAL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + + F + +N FD + ++ Sbjct: 57 TGITNEMIAAAP-PASNVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGILG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 M A +AF+ + A S +L L + AH A Sbjct: 107 --------------MSAEHAFACTMLVARRIYPDAQSHRLSSLVDMLRLPKSGRAHRAMV 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L ++ + + Sbjct: 153 DAEMAGHLWCRLQHDIARTY 172 >gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 296 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 8/115 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N FV D ET G + A+D+ + A V+ + E I+S A I Sbjct: 120 NEFVAIDLETTGLNPAIDKIVEIAAVKF-KYGEIIDSYTTL---INPGIHIPSSASKINH 175 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 IT + + S + + I+ +N FD + + + YD Sbjct: 176 ITDETVHGAP----DLSEVLPNLLNFIGDSILVMHNASFDLKFLKYHAAKLGYDI 226 >gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 247 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 26/198 (13%) Query: 7 IYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++D ET G D F ++V+ + + V++ + +TGITP Sbjct: 65 VFDLETTGFHYHYGDEILSFGAIKVEGE-RITDE--VYYSLAKPACQIPERIIELTGITP 121 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + A + +F + + ++ + D + ++ G Sbjct: 122 EMAQSAPS----LLEALREFMAFVDDRVLVAHGSAHDKAFLDVALWK------TTKAHLG 171 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + D + + R + D S L + I H A D T Sbjct: 172 HRVLDTMMIARKL------------EPDRRISGSLDEWLAVYEIPVTKRHHALEDSKMTA 219 Query: 186 ALVWLIREKKPKLFEYLY 203 L + ++ + Sbjct: 220 QLWTALIQRLKEQNVITL 237 >gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] Length = 213 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ D+ET G + DR + V++ E +++ + + T Sbjct: 7 DSVIVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSGFIEGYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E F + +N FD + D Sbjct: 63 GITNRMLSTA-ASCGEVMDEFADFIQDSQ---LVAHNASFDKRFLDAELDYIGRDY---- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 NG +L R A + KL DL I++ H A AD Sbjct: 115 --NGQFACSMLIARR--------------LIQDAPTHKLGDLVRFKSIDNDGTFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLFEYL 202 T L L+ ++ Sbjct: 159 SEMTARLWLLMIDELQSDHGIH 180 >gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 242 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 59/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V F DPEA+ Sbjct: 11 VILDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRY--FHQYINPGQAIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ + + ++ F S I +N FD + + F + Sbjct: 68 VHGITDERVANEPRFH-QIAQEFIDFISGAE---IVAHNANFDVSFMDHEF--SLLQPLG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 D LD+ + ++ + L L GI++ H A Sbjct: 122 PKTSEICEILDSLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRLYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + + + K Sbjct: 168 LLDAEILADVYLAMTGGQTKF 188 >gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 242 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + DPEA+ Sbjct: 11 VILDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRYYHQY--INPGQAIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ + + ++ F S I +N FD + + F + Sbjct: 68 VHGITDERVANEPRFH-QIAQEFIDFISGAE---IVAHNANFDVSFMDHEF--SLLQPLG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + D LD+ + ++ + L L GI++ H A Sbjct: 122 PKTSDICEILDSLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRLYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + + + K Sbjct: 168 LLDAEILADVYLAMTGGQTKF 188 >gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330] gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365] gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40] gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330] gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40] gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] Length = 332 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 239 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 18/193 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A +R+D + EA I GI + Sbjct: 11 FDLETTGTDVEHDRVVTAAVIRLDASGAV---AQTRTWLLDPGIEIPAEATAIHGIPTAR 67 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G I + + T ++ N R+D R+ + Sbjct: 68 ARAEGAPARGAVAEITEALAAGLRAGTPLVVMNA-RYDLSLLDRECRRHGVPALA-ELLG 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G + ++ +A S L L G+ +AHDA++D A Sbjct: 126 GEPAPVVDPLVLDKHA----------DRYRRGSRVLAALCEHYGVRLDSAHDARSDALAA 175 Query: 185 LALVWLIREKKPK 197 L + + P+ Sbjct: 176 TLLARSLGARHPR 188 >gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] Length = 235 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 65/220 (29%), Gaps = 39/220 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G D DR + V E ++ F + E V I Sbjct: 4 IIFDTETTGLDKEKDRIIEIGCV------EMVDRYLTGCQFHVYLNPEGVIIPDEVVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + ++ +F N + +N FD + R Sbjct: 58 GLTNERLKNE-KSFSDIVDEFLEFI---NGATMIAHNASFDIGFINAELKRVNKPLISVD 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + P+ L L GI++ + H A Sbjct: 114 N-----IIDTLAMARRKFPMGPN--------------SLDILCKRFGIDNSHRVLHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 D + + K + + NK L + I Sbjct: 155 DAEILADVYIELIGGKQG----VLGFDNKRNLDEHIQNDT 190 >gi|332520058|ref|ZP_08396522.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4] gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4] Length = 1453 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D IES E + KP +P Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIES-EDYLVKPEGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A GV E + + + T + N++FD F R Sbjct: 61 -DAEKIHGISTELAQEQGVELIEVLEKFNIALNK--TKFVVGQNVKFDLNIMGAEFVRED 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 ++ L V+ + Q P G FKL L Sbjct: 118 I----------ANQLQELPVLDTCTEHTASLCQIPGGRGGR--FKLPTLTELHQYLFNQP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196 AH+A ADV AT + ++ Sbjct: 166 FAEAHNATADVEATTRCFLELIRRQQ 191 >gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] Length = 1484 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 30/214 (14%) Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + P Q A D + +E + D Y Sbjct: 2 YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDEKGALLEHKDFLI--IPDGYTIP 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A GV + + S T I NI FD + FYR Sbjct: 60 YDAERIHGISTELATEQGVSIHKVFEEFEKALSK--TQYIVGQNIGFDIHIMGAEFYRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 ++ D L ++ + + + P G FK +L G Sbjct: 118 V----------STVLDKLPILDTCSELTAELCKIPGGRAGK--FKYPNLTELHEFLFGTP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYD 204 AH+A ADV AT + + + Sbjct: 166 FAEAHNATADVEATARCFFELLRRNEGFSSSAIS 199 >gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 49/187 (26%), Gaps = 30/187 (16%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G A DR + A V V R ++ + + Sbjct: 1 MEAVAVIDFETTGLSPAQGDRATEIAAVIV-RDGRVVDRYQSLM---NAGVRIPAHIESL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ A+ R + F + +N FD + R Sbjct: 57 TGISNAMIRSAPTA-AQVMREVADFI---GGIPMVAHNAAFDAKFWDAELARIER----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + D + + A S +L L + H A A Sbjct: 108 -----ARKQDFVCSLLLSRRLF----------PLAPSHRLGALVEYARLPVAGRFHRALA 152 Query: 180 DVYATLA 186 D + Sbjct: 153 DAEMAAS 159 >gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] Length = 298 Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 32/195 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N + + D ET G D + ++V + ++ DY D +TG Sbjct: 12 NDYCVLDTETTGLSSYYDEIIEIGILKVRDN-KIVDRYSQL---IKPDYEIDSFITSLTG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + F +I +N FD + F + Y Sbjct: 68 ITNEMVKEMPAINF-VMSDVLSFI---GKDVIIGHNTSFDIRFLNAGFNIELDNKY---- 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D M+ P+ +L DL G+ + N H + AD Sbjct: 120 ---------MDTMQFARKLFPELKH----------HRLSDLTSYLGLSN-NEHRSIADCI 159 Query: 183 ATLALVWLIREKKPK 197 AT L I++ K Sbjct: 160 ATKELYDSIKDTMTK 174 >gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803] gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803] Length = 507 Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 85/333 (25%), Gaps = 34/333 (10%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + F I D ET G + +R + + V + + I+ Sbjct: 1 MKDVKFAITDIETTGNGIKGNRITEICVIVV-QNGKVIDEYSSL---VNPSQAIPLYIET 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI + +E + I + CI +N+ FD R F D Sbjct: 57 LTGINDEMVFNAPQ-FSEIADEITKITKD---CIFVAHNVNFDYNIIRAEFASLDRDF-- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 G S+ L ++ + I H++ H AK Sbjct: 111 ------------------KRKRLCTVRLTKKLIPGLFSYSLGNICTSINIPHIDRHRAKG 152 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLR----KLIDIQNMTPLVHVSGMFGASRS 235 D AT+ L P+ K + F + Sbjct: 153 DCDATVTLFQRCISLDPEFEVINQLLNQKTAASYLPPNFKSSDFEKLPITTGVYFFKDKD 212 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 L A + + + S + L + +K Sbjct: 213 GRPLYIGKAKNIKSRIKSHFQEKSNRKYKLMQETYSIDYELTGNELLALLRESELILKFF 272 Query: 296 -HLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327 NK + Y + + GI+ +N Sbjct: 273 PKYNKAQKKVSRPYTLTSYHNQKGIEQFALHKN 305 >gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] Length = 235 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 39/220 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G D DR + V E ++ F + E V I Sbjct: 4 IIFDTETTGLDKEKDRIIEIGCV------EMVDRYLTGRQFHVYLNPEGVIIPDEVVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + ++ +F + +N FD + R Sbjct: 58 GLTNERLKNE-KSFSDIVDEFLEFIK---GATMIAHNASFDIGFINAELKRVNKPLISVD 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + P+ L L GI++ + H A Sbjct: 114 N-----ILDTLAMARRKFPMGPN--------------SLDILCKRFGIDNSHRVLHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 D + + K + + N+ + + I Sbjct: 155 DAEILADVYIELIGGKQG----VLGFGNRRGVDEHIQNDK 190 >gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis] gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis] Length = 256 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 76/251 (30%), Gaps = 29/251 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G DVA DR + + +V K E P+ + GIT Sbjct: 9 ICFFDLETTGIDVARDRIVEISVFKVFPNGNK----ESKTWLVNPTIPIPPQTTAVHGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K + E + ++ + + G+N+ RFD R Sbjct: 65 DEKVANEP-TFNELAPHVYNMIKDSD--LAGFNSDRFDIPLLAEELLRAG---------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D + +++ S + NAH A+AD AT Sbjct: 112 -------VDFDMKNRVSVDVQTIFHKKEERTLSAAYKFYCNQ---SLENAHSAEADTMAT 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAPV 243 ++ ++ L + +K +D L +F + L+ V Sbjct: 162 YEILKAQLDRYEDLENDMKLLSEYTTRKKTVDFAGFITLNKEGKEVFSFGKHKGVLVEEV 221 Query: 244 AW-HPRYKDSV 253 P Y + Sbjct: 222 LEKEPGYYSWL 232 >gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] Length = 465 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 63/233 (27%), Gaps = 30/233 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITG 62 F ++D ET G D Q +RV E + + + G Sbjct: 257 SFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETL---VNPGFDIPAASTAVHG 313 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + ++ HQF ++ +N FD + R + D Sbjct: 314 VTTEMVRNSPMI-KTAGAAFHQF---CKDSVLVAHNAPFDIAFLRRHAKSSGVDWN---- 365 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKAD 180 +LD + + L L I A H A D Sbjct: 366 ------HMVLDTVLLSAVIF----------GASVPHTLDALCDRLEINIPEALRHTAMGD 409 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 AT + + D + + ++++ P+ + + A Sbjct: 410 AQATAEALLRMLPMLEARGFTTLDEVLEQTRQHGRLLEDLNPVDNHGSTWQAD 462 >gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 1572 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 26/191 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + AG+++ + KI + F IT I Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGIKI-KNGNKIGEFQKF---IDPQQKLTKTITNITNI 535 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ + + QF + C++ +N FD + Sbjct: 536 TDEMLQGQQTID----QVLPQFLAFAKDCVLVAHNASFDVDF---------LKEKAKELK 582 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D M + + +++ F L+ LA ++ + H A AD A Sbjct: 583 ISLEPKPIIDTMALSQRYFSNLLKY---------FSLKRLATVFKVKLEDHHRALADATA 633 Query: 184 TLALVWLIREK 194 T + + ++ Sbjct: 634 TSEIFIKMIDQ 644 >gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] Length = 1485 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D I + F KP +P Sbjct: 2 YLIFDTETTGLPRRWDAPLSDSDNWPRAVQIAWQLHDEWGALI-EHQDFLIKPDGFDVPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A + GI+ Q A G+ AE + ++ S + NI FD FYR Sbjct: 61 -DAEKVHGISTQLAEAQGMPIAEVFKAFNEALSKAQ--YVVGQNIGFDINIMGAEFYRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + S + V+ + + Q G +KL L GI Sbjct: 118 VE----------SPLTQMPVIDTCTEATANLCQIAGGKGGR--YKLPTLTELHSFLFGIP 165 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + + Sbjct: 166 FAEAHNATADVEATTRCFFELIRR 189 >gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] Length = 1446 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 27/202 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G + + V++ + +E + +T Sbjct: 418 ESFVVFDLETMGLNSHEHEIIEIGAVKL-QGTRIVERYSQL---VNPKKPIPKKIQELTN 473 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ +E E + +F + +N FD + R + Y Sbjct: 474 ISQDMVDNMPTIE-EVLPKFMEFV---GDSTMVAHNAPFDMGFIRRDVKKFMGYDY---- 525 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L + R +Y ++ L++L G+ N H A D Sbjct: 526 --KPAVIDTLQMARDLY-------------PELKAYGLKNLNKVLGLSLDNHHRAVDDSQ 570 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT + + EK + + Sbjct: 571 ATANMFIIFIEKYMEKGITNLN 592 >gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] Length = 205 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 30/185 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D+ET G + DR + V++ + + + + TGIT Sbjct: 9 IVLDFETTGLSPNMGDRAIEIGAVKL-VDGQVAGTFQQLM---NPGFRVSGFIEGYTGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E F + +N FD + F R Sbjct: 65 NTMLRTA-LPCEEVMAEFAHFI---GDTPLVAHNASFDKRFLDAEFDRIG---------- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 +R F+ + A + KL DL IE+ H A AD Sbjct: 111 ----------VRYPGQFACSMLIARRLIQNAPTHKLGDLVRFKQIENDGTFHRALADSQM 160 Query: 184 TLALV 188 T +L Sbjct: 161 TASLW 165 >gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] Length = 442 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 75/251 (29%), Gaps = 32/251 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + A + + E + + +TGI Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQFNGH-EITDQFISL---INPERPIQEFVTKLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + + CII +N FD + F R YD Sbjct: 58 NKMLRNAPK-FYEVAKRIVEITTD---CIIVGHNAAFDYRILQTEFRRLGYDF------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + S+ L L + GI + H A D AT Sbjct: 107 -------------VRTTLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTALIAP 242 L L + EK K + + K +R + +++ L + + + + Sbjct: 154 LKLFKYLLEKDTK--KDIITTSVKQDIRLEMASRHLKILDTLPETLGIFYMHNEEGKVIY 211 Query: 243 VAWHPRYKDSV 253 + H K V Sbjct: 212 IGKHKNIKQQV 222 >gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457] gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis ATCC 23457] gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28] gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90] Length = 332 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1] gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1] Length = 257 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N +D ET G +VA DR + A ++V K E + E I Sbjct: 5 LKNPICFFDLETTGVEVAKDRIVEIAILKVYPNGNK----ESKTWLVNPEMPIPAETSEI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT K + E S+ I+ + + GYN+ RFD R D Sbjct: 61 HGITDDKVANEP-TFKELSKEIYNMIKDSD--LAGYNSDRFDIPLLAEELLRADID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + + ++ + + G E AH A+AD Sbjct: 114 --------FDMKNKVSIDVQTIFHKMEKRTLSAAYKFY--------CGKELEGAHGAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH-VSGMFGASRSNTAL 239 AT ++ ++ +L + +K D +F + Sbjct: 158 TNATYEVLKSQLDRYDELENDVKKLSEFTTRKKTADFAGFIIFDKDGEEIFSFGKHKGKK 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VAKVLDEEPGYFGWIL 233 >gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483] gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2] gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23] gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483] gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23] gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 259 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + T + + + I Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E ++ I + + G+N+ RFD F R Sbjct: 61 HGIYDADVVDCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ F + + + S + N +AH A+AD Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEAD 157 Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ + + + + + + M + +F + Sbjct: 158 TRATYEVLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 218 VAEVLKKDPGYYSWIL 233 >gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale M104/1] Length = 260 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 28/189 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ + D E G D+ + RV R E +++ +TG Sbjct: 23 KNYTVIDLEMTGLSAKNDKIIEIGAARV-RGGEIVDTISTL---VNPKQHIPQRVQELTG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT A+ + II N+ FD + + + Sbjct: 79 ITDSDVENA----ADMDVAVDNLLDFIGDDIILGQNVTFDYSFLKQWAVNH-------KR 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D L + R S KL+DL + NAH A D Sbjct: 128 TLSLNAYDTLKIARKC-------------LPAEQSKKLEDLCEYFDVSRENAHRALDDAI 174 Query: 183 ATLALVWLI 191 T + + Sbjct: 175 ETKQIFEKL 183 >gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] Length = 268 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 17/146 (11%) Query: 1 MTNHF------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M + V++D E+ G DR + A +++ T+ + + Sbjct: 1 MMQNLQLERPLVVFDIESTGVMPQRDRIVEIAVLKIFPDGH----TQNTVRRLNPEMPIP 56 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P A I GI+ + ++ ++ + + GYN FD F R Sbjct: 57 PGATAIHGISDADVADCP-TFLLIAEKLFRYIEDCD--LAGYNITGFDIPMLEAEFKRAG 113 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYA 140 + + D ++ +Y Sbjct: 114 F----TFKVDDRKVIDAYNIFCKLYP 135 >gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17] gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574] gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17] gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574] Length = 284 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T V++D ET G D+ DR Q + ++V ++ E+ PE + Sbjct: 5 LTKPLVVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRGNEI----INPGKPIAPEITAL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 TGI+ E + R+ + F G+N+ FD F R D Sbjct: 61 TGISDDDVKDRPA-FKELAPRLAEEFK--GCDFAGFNSNHFDIPMLAEEFLRAGIDF 114 >gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] Length = 236 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 32/211 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61 ++ D ET G + R + V E I+ F + + + EA+ + Sbjct: 4 IVLDTETTGINPDDGHRIIEIGCV------ELIDRKPTGNHFHVYINPERVVEDEAIAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + V F++ + F + +N FD + F R Sbjct: 58 GITNEYLADKPV----FAQVVDAFIDFIKGSQLVIHNAPFDVGHMDAEFKRLG-----KM 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 + D+LD ++ P L L A +++ H A Sbjct: 109 YGKTYDYCDVLDSLQLAREKRPGQRN-----------SLDALCKAFHVDNSARELHGALL 157 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + L + + N+NQ Sbjct: 158 DAEILADVYLAMTGGQTALSLHGQNQDNENQ 188 >gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287] gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287] Length = 258 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 29/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D ET G D+ DR + + ++V K E A + Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPKAASDV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT ++ + E +++IH + + GYN+ RFD R D Sbjct: 61 HGITDERVAGEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVDFDL- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + G + ++AH A AD Sbjct: 117 ---GNRVSVDVQTIFHKMEQRTLS----------------AAYKFYCGKDLIDAHTASAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239 AT ++ ++ L + +++ D +F + Sbjct: 158 TNATYEILKAQLDRYDSLENNIKKLSEFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKR 217 Query: 240 IAPVA-WHPRYKDSVIG 255 + + P Y ++G Sbjct: 218 VEDIFDEEPGYFGWLLG 234 >gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 631 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 28/182 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A + + E+ P P V + G+T ++ Sbjct: 23 VDVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTL---LNPGCDPGP--VEVHGLTVER 77 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + RI ++ +N +FD + + F R W + Sbjct: 78 LQGAP-TFDQVAGRIGAMLQ---GRVLVAHNAQFDYDFLAHEFAR------ARMWLPVSQ 127 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + D KL LA G+ AHDA D + Sbjct: 128 RLCTLALNRQV-------------DPPTDDMKLGTLAAHYGVSRQRAHDALDDTRVLAGI 174 Query: 188 VW 189 + Sbjct: 175 LR 176 >gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] Length = 276 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 25/201 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++++D ET G + + + A ++ D E +E + + +TGIT Sbjct: 96 YIVFDLETTGLEAHKEAITEIAAIKFDYD-EPVEYFHTY---VNPKKKIREKITDLTGIT 151 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + F + + +N+ FD + + Y Y Sbjct: 152 NEMVASAPPIEY----VLPNFLKFIDKYTLISHNVSFDMSFILDPMYNLGYK------KP 201 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NAHDAKAD 180 GN D L + R ++ +S+KL+DL G+ +H+A D Sbjct: 202 GNKAIDTLALARRF-------MKDEDTGKRLSSYKLEDLKYQLGLPLDVYDIKSHNALYD 254 Query: 181 VYATLALVWLIREKKPKLFEY 201 L RE K + ++Y Sbjct: 255 TKVAYFLYKNCRELKEEYYKY 275 >gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 256 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 77/260 (29%), Gaps = 39/260 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G ++ DR + ++V + E + + + I GI Sbjct: 10 VFFDLETTGINITTDRIVELCYIKVYPNGNE----ESKSMRINPEMHIPESSSAIHGIYD 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + +R + G+N+ RFD F R D Sbjct: 66 EDVADCP-TFKQVARELANTIK--GCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKF- 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D+ ++ + + G + NAH A AD AT Sbjct: 122 ---IDVQNIYHKLERRTLS----------------AAYKFYCGKDLENAHSALADTRATY 162 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 ++ + P+ KN + L D MT V +G + + Sbjct: 163 EVLMAQLDHYPED--------LKNDVAFLSDFSRMTDNVDFAGRMVYDENRDVVFNFG-- 212 Query: 246 HPRYKDSVIGCNLSGDMRVF 265 +YK + L D + Sbjct: 213 --KYKGKKVTDVLRTDPGYY 230 >gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1] gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1] Length = 332 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALI------AGADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37] gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma genitalium G37] gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma genitalium JCVI-1.0] Length = 1451 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 68/486 (13%), Positives = 155/486 (31%), Gaps = 52/486 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI+D ET G D +F+ ++ + +I+ + F D IT I Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSARKI-KNNSEIDHQQFF---LKIDKPIPKTITEITKI 470 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + G+ + + +I + ++ +N I FD + + F + Sbjct: 471 TDEMLEG-GIDQQQGLEKIRNYLDDC--VMVAHNGINFDLPFLQTQFEKYNIKPL----- 522 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 N D L + A+ +S L ++ +E + H A+ D Sbjct: 523 -TNPLIDTLCLSWALNPLF-------------SSHTLSNICSKLKLEFDDERLHRAEYDT 568 Query: 182 YATLALVWLIREKKPKLFEYLY----DYRNKNQLRKLIDI-QNMTPLVHVSGMFGASRSN 236 A + + +++ ++ NK L+ T +V+V G Sbjct: 569 EALKKVFFYFKKQLKEMGINTLTEIDQNLNKKCQIDLMKRVFTNTAIVYVKNQRGFQNLY 628 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 L + H + V+ +L+ + F ++ + + + I++V Sbjct: 629 EMLSIALTDHNANRPLVLASSLAKFRKSFLLTENPVQGDIFKAALTKPINELEKAIEKVD 688 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 +L+ + R G+ + + + L+ + + A+ + Y + Sbjct: 689 F----VLISQPNAYLGYTLREGLKKELINDAIKLVIKTATKLKKLVAVASDAYFIHPWEN 744 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQ-LSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 + + + EQ + + L +D L + F + + L + Sbjct: 745 EYYKAIVCAKGLGGKWHRHFNNKEKEQTVPEVFLHTTDEMLKRMSF--LGEDIAYKLVVE 802 Query: 416 EKQDWLEHR--------KKMLTRSRIEEYKNKL----QSLSGEYKGDEGKEGLINALYEY 463 ++ K L +++ KL + + G + + + + Sbjct: 803 NTNKIVKLLDLNELVPTKNKLYPPVMQDSNQKLIDKTWKQAEKRYGKNLPKLIKERIEKE 862 Query: 464 LQWVIP 469 L +I Sbjct: 863 LNAIIS 868 >gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] Length = 332 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG catalytic domain-containing protein [Burkholderia glumae BGR1] gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia glumae BGR1] Length = 381 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 45/194 (23%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G R + V V + +TGIT Sbjct: 19 LAFVDLETTGGSATEHRITEIGVVEVGPNG-----VSTWSSLIDPCQPIPAFIQQLTGIT 73 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + ++ +N FD + R F R Y Sbjct: 74 DAMVRGAP-SFASIAAALYARLE---GRFFIAHNASFDRGFLRAEFERAGYAFNP----- 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 125 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALVPNARHRALADADLV 169 Query: 185 LALVWLIREKKPKL 198 + E P Sbjct: 170 WQFWRRLHETIPSE 183 >gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str. 9-941] gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar Abortus 2308] gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840] gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19] gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99] gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038] gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94] gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis B2/94] gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99] gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M490/95/1] gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941] gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308] gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19] gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038] gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94] gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis B2/94] gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99] gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M490/95/1] gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] Length = 332 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] Length = 234 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 29/218 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M FV D ET G ++ + VR R + ++ I Sbjct: 1 MIKDFVAIDLETTGLSPYDNKIIELGAVRY-RDGKPVDQYNTL---INPGVHIPERITEI 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + ++ E RI +F +I +N+ FD + + + Sbjct: 57 TGIDDDMVSKAPYIDDE-LDRIMEFI---GNDVILGHNVIFDYTFIAGALAGHSIE---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + S L+ L I ++ H A D Sbjct: 109 ---YSAEAIDTLKFAKKV-------------LPANESKNLEHLCEMFDIVTIH-HRAYED 151 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + + + + E + + K + + Q Sbjct: 152 AMSAANVYFRLCELSGEETIVEQYHFKKQKAAGITPKQ 189 >gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] Length = 233 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 66/230 (28%), Gaps = 37/230 (16%) Query: 6 VIYDYETFGRDVALD------RPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPE 56 VI+D ET G + D R + V E I+ F C + DP+ Sbjct: 6 VIFDTETTGMNFESDNKAEGHRIIEIGCV------ELIDRVPTEHYFHCYLNPEQPVDPQ 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A + GI+ + + + + + + +NI FD + D Sbjct: 60 AFKVHGISDEFLADKP-FFKDVLPEFEAYLASADE--LVAHNIAFDRQFIDRELQLAGCD 116 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + + + D L + R +A + + L L G+++ Sbjct: 117 ---YRLGDKFTLVDSLKIAREKFAGARN--------------NLDALCKRFGVDNTGREL 159 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 H A D + + + L + + + Sbjct: 160 HGALLDAQLLAEVYLKLTGGQSDLSFAHPMMASARRAEQKTAATFAKTPC 209 >gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1419 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 26/194 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T V +D ET G + + D + A ++ IE+ F P V I Sbjct: 762 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRPISPRTVGIH 814 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113 IT + V+ ++ I Q+ + ++G+N D R Sbjct: 815 HITNEMVRDAPTVDV-VAKSIGQYLRLDMASYNPHEILVLVGHNVFSLDQPMLRRALECY 873 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAI-----YAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + +G D L ++ + + + P + A+S +L L A Sbjct: 874 APEC----QLDGVLFCDSLALLNSHRSVLRWRLRGNRANQPLMEALASSLRLSRLITALN 929 Query: 169 I-EHVNAHDAKADV 181 + + H A D Sbjct: 930 VRPEGDLHRADTDT 943 >gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15] Length = 239 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 33/197 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G D A R + V E +E + D + EA+ + Sbjct: 7 IVLDTETTGIDPAEGHRIIEIGCV------ELMERQLTGRNYHVYINPDREVEAEAITVH 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + AE + +F + +N FD + + F R Sbjct: 61 GITNEFLADKPR-FAEIADEFFEFIKGAE---LVIHNAAFDVGFMDSEFARL---KPVRK 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + D L + RA + + L L G+++ N H A Sbjct: 114 TADHCGIVDSLAIARARHPGQKN--------------NLDALCKRYGVDNSNRDLHGALL 159 Query: 180 DVYATLALVWLIREKKP 196 D + L+ + Sbjct: 160 DAEILADVYLLLTGGQT 176 >gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383] gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 244 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVANQIRDFVQDAELII---HNAPFDLGFLDAEFARLDLPPFTKHCGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] Length = 332 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTVRGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33] gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33] Length = 332 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 55/186 (29%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFHSG-HRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 945 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 28/204 (13%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D ET G D+++D R QF+ V + +E+ + + Sbjct: 4 KTTYAVVDIETTGTDMSVDNRIIQFSCTLV-AHGKIVETYVS---DINPQREVPERIIQL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP++ + + S ++++ S + +N+ FD + F R Y Sbjct: 60 TGITPERLKKAP-TFDQVSSKLYKLLS---GTVFVAHNVNFDFPFLNGEFQRVGYPEL-- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + +D + P +S++LQDL+ I H + H A +D Sbjct: 114 -------DIEAIDTVTLSQILLPTL----------SSYRLQDLSAYFNIIHNHPHTADSD 156 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L+ ++ + L + Sbjct: 157 ALATAKLLLILLRQVKMLPRRTLE 180 >gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2] gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2] Length = 332 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALI------AGADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 257 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 28/241 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G ++A DR + A ++V K E + E + I Sbjct: 5 LTKPICFFDLETTGTNLAKDRIVEIAILKVYPNGNK----ESRTWLVNPEMEIPKEVIAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ +K + E S++I+ + GYN+ RFD R D Sbjct: 61 HGISNEKVANEP-TFKELSKQIYDMIK--GCDLGGYNSNRFDIPLLAEELLRADID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + A +FK G E ++AH A AD Sbjct: 114 -----------FDMKNMMAVDVQTIFHKKEQRTLAAAFKF-----YCGKELIDAHSAAAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239 AT ++ +K L + + + D +F + L Sbjct: 158 TEATYEVLKSQLDKYDDLENDIKWLSQYSARKSFADFAGFISFNKKGEEIFSFGKYRGKL 217 Query: 240 I 240 + Sbjct: 218 V 218 >gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str. 'morsitans'] gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str. 'morsitans'] Length = 252 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 30/223 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRH--FHVYLKPDRLVDPEAFNV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F + +N FD + F Sbjct: 66 HGISDEFLADKP-TFADVADEFLHFIRGGE---LVIHNAPFDIGFMDYEFGMLNR----- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 G ++ D + + L L I++ H A Sbjct: 117 ----GIAKTDTFCKVTDSLLLARKMF-------PGKRNSLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 D + L+ + + + + + + + + IQ + Sbjct: 166 LDAEILADVFLLMTGGQTAMRFAMEGEQEQRDVGETVQIQRVQ 208 >gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] Length = 1460 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 68/204 (33%), Gaps = 30/204 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G R Q A D I E + +P +P Sbjct: 2 YLIFDTETTGLPKNWSAPITDSDNWPRAIQIAWQLHDDMGNCI-EHEDYLIRPDGFDIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A RDG+ E + T + N+ FD F+R Sbjct: 61 -DAERIHGISTELAQRDGLPLGEVLGKFKAALER--TKFVVGQNVGFDVNIMGAEFHRL- 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + ++ L V+ + Q P G FKL L Sbjct: 117 ---------DVTNQLQELPVLDTCTETTAQLCQIPGGRGGK--FKLPTLTELHQYLFNQP 165 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + + Sbjct: 166 FAEAHNATADVEATTRCFFELVRR 189 >gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] Length = 968 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 30/201 (14%) Query: 1 MTN--HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M+N + + D E G + +R QF+ V + + + + + Sbjct: 34 MSNLQTYAVVDLEMTGTNPNGSERLIQFSCVFTEGN-KIVNTFSTL---INPLRKIPEDV 89 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T IT + E + I+ S + +NI D + + F R + Sbjct: 90 QNLTNITDKDVKSAP-TFDEVAGTIYALLSD---TVFVAHNIELDYRFLNSEFERIGFP- 144 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 D + + + + S++L DLA G +H + H A Sbjct: 145 -----KLDLEGIDTVQLAQIAF-------------PTLASYRLGDLAHFLGFKHKHPHHA 186 Query: 178 KADVYATLALVWLIREKKPKL 198 +D + T L L+++K + Sbjct: 187 DSDAFVTAELFILLQKKLASM 207 >gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] Length = 1510 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 73/204 (35%), Gaps = 30/204 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D R Q A D + I + + KP +P Sbjct: 2 YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLI-EHQDYLVKPEGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A DG+ AE + + S T I N+ FD F+R Sbjct: 61 -DAERIHGISTELAEADGITLAEVLEKFNIALSK--TKFIVGQNLGFDVNIMGAEFHRMG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI----E 170 + S+ + V+ + +Q P G FKL L + Sbjct: 118 VE----------SQMASMPVLDTCTEVTASLLQLPGGRGGK--FKLPTLTELHSYLFDQP 165 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + Sbjct: 166 FAEAHNATADVEATTRCFLELVRR 189 >gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] Length = 945 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 28/204 (13%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D ET G D+++D R QF+ V + +E+ + + Sbjct: 4 KTTYAVVDIETTGTDMSVDNRIIQFSCTLV-AHGKIVETYVS---DINPQREVPERIIQL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP++ + + S ++++ S + +N+ FD + F R Y Sbjct: 60 TGITPERLKKAP-TFDQVSSKLYKLLS---GTVFVAHNVNFDFPFLNGEFQRVGYPEL-- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + +D + P +S++LQDL+ I H + H A +D Sbjct: 114 -------DIEAIDTVTLSQILLPTL----------SSYRLQDLSTYFNIIHNHPHTADSD 156 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L+ ++ + L + Sbjct: 157 ALATAKLLLILLRQVKMLPRRTLE 180 >gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 232 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 17/187 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVIYD ET G D DR V + E I+ + F + + +AV + G+ Sbjct: 45 FVIYDTETTGFDFRHDRIISIGAVGT--KGEVIDIADSFEVLLRQEVCSERDAVTVHGLL 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G+ E+E R + N I+ ++ ++ + R Sbjct: 103 KRDI-DSGLEESEAVCRFLDYL--GNAVIVAHHADFDIAMINQVLSRRFGM--------- 150 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + A +A + + + ++L +L GI + H A D Y T Sbjct: 151 ---RLFNEALDTASFAKRLEKGPYYNLAHKGGEYRLDNLCARYGIRLYDRHTAPGDAYLT 207 Query: 185 LALVWLI 191 L + Sbjct: 208 AQLFQRL 214 >gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] Length = 207 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ D+ET G + DR + V++ E +++ + + T Sbjct: 7 DSVIVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSGFIESYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + +E F + +N FD + D Sbjct: 63 GISNRMLSTA-ASCSEVMDEFADFIQ---GSQLVAHNASFDKRFLDAELDFIGRD----- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 F+ + A + KL DL N H A AD Sbjct: 114 ---------------YTGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDGTFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLF 199 T L L+ ++ Sbjct: 159 SEMTARLWLLMIDELQSDH 177 >gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] Length = 945 Score = 87.6 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 28/204 (13%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D ET G D+++D R QF+ V + +E+ + + Sbjct: 4 KTTYAVVDIETTGTDMSVDNRIIQFSCTLV-AHGKIVETYVS---DINPQREVPERIIQL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP++ + + S ++++ S + +N+ FD + F R Y Sbjct: 60 TGITPERLKKAP-TFDQVSSKLYKLLS---GTVFVAHNVNFDFPFLNGEFQRVGYPEL-- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + +D + P +S++LQDL+ I H + H A +D Sbjct: 114 -------DIEAIDTVTLSQILLPTL----------SSYRLQDLSTYFNIIHNHPHTADSD 156 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L+ ++ + L + Sbjct: 157 ALATAKLLLILLRQVKMLPRRTLE 180 >gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo] gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo] Length = 379 Score = 87.6 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 181 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 216 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 217 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 270 Query: 184 TLALVW 189 LA++ Sbjct: 271 LLAVLK 276 >gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 244 Score = 87.6 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 LILDTETTGLNPRGGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F + I +N FD + F Sbjct: 61 TEFLSDKPK-FAEIIDQFRDFIQDADLII---HNAPFDIGFLDTEFALLGLPPVS---TY 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 114 CGEIIDTLAQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13] gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653] gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13] gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653] Length = 332 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALI------DGADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea DSM 7271] gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea DSM 7271] Length = 258 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 29/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D ET G D+ DR + + ++V K E A + Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPKAASDV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT ++ + E +++IH + + GYN+ RFD R D Sbjct: 61 HGITDERVAGEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVDFDL- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + G + ++AH A AD Sbjct: 117 ---GNRVSVDVQTIFHKMEQRTLS----------------AAYKFYCGKDLIDAHTASAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239 AT ++ ++ L + +++ D +F + Sbjct: 158 TNATYEILKAQLDRYDNLENNIKKLSEFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKR 217 Query: 240 IAPVA-WHPRYKDSVIG 255 + + P Y ++G Sbjct: 218 VEDIFDEEPGYFGWLLG 234 >gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841] gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841] Length = 256 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 74/253 (29%), Gaps = 32/253 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G ++ DR + ++V + E + + + I GI Sbjct: 10 VFFDLETTGINITNDRIVELCYIKVYPNGNE----ESKSMRINPEMHIPESSSAIHGIYD 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + ++ + G+N+ RFD F R D Sbjct: 66 EDVADCP-TFKQVAKDLANTIK--GCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKF- 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D+ ++ + + G + NAH A AD AT Sbjct: 122 ---IDVQNIYHKLERRTLS----------------AAYKFYCGKDLENAHSALADTRATY 162 Query: 186 ALVWLIREKKPKLFEY---LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 ++ + P+ + +K + M + +F + +A Sbjct: 163 EVLMAQLDHYPEDLKNDVAFLSDFSKM-TDNVDFAGRMVYDENHDIVFNFGKYKGKKVAD 221 Query: 243 VAW-HPRYKDSVI 254 V P Y ++ Sbjct: 222 VLRTDPGYYSWIL 234 >gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris MG1363] gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis subsp. cremoris MG1363] gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 791 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 84/250 (33%), Gaps = 37/250 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E + ++ Q V + +E+ P +T Sbjct: 1 MTRYAVVDLEATDAHSSENKIIQIGIALV-EGGKIVETYSTE---VNPHEPLLPRISELT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ ++ +E + + + + + +N RFD F + Sbjct: 57 GLSDKQLKSAP-DFSEVASEVRKLLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N R D +D+ R Y + L+ L+ + H + H A +D Sbjct: 109 --NEMLRVDTVDLARVFYPTFE-------------KYGLEALSEKLDLAHDHPHAAVSDA 153 Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231 YAT L+ I EK KL + + + +K+ L++ +D + P Sbjct: 154 YATAELLIRIEEKIQKLPRSVLEELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNI 213 Query: 232 ASRSNTALIA 241 A+R + ++ Sbjct: 214 ATRKFKSSVS 223 >gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella anatipestifer DSM 15868] gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella anatipestifer DSM 15868] Length = 254 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 28/239 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 I+D ET G +++ DR + ++V+ S E + A + G Sbjct: 7 KPLCIFDLETTGTNISKDRIVEICILKVNTD----ASRETKTWLVNPEMHIPAFATAVHG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + E + +I + S + G+N+ RFD R D Sbjct: 63 ISDEDVKDAP-TLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVD------ 113 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +DL + +AH A+AD Sbjct: 114 ------FDLSKMKLVDAQV--------IFHKMEPRNLSAAYQFYCNKTLEDAHSAEADTL 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALI 240 AT ++ K +L + + + +K D+ +F + L+ Sbjct: 160 ATFEVLDAQVGKYEELPKDINGLSEFSYHQKFADLAGFIAFDDKGQEIFTFGKYKGQLV 218 >gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 30/191 (15%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + +D ET G D DR + A + + F + EA Sbjct: 1 MKRSIL-FDTETTGLDPLNGDRVIEIAALELIGDL-PSGR--SFRVLIDPERDVPEEASR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G T A+ + F + +N FD + F R Sbjct: 57 VHGFTRADLEGQPK-FAQIADEFLAFIGDDE---LIAHNAAFDFGFLNAEFRRAGLPELA 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L + RA + P+ L L I+ H+A Sbjct: 113 MTRM-----VDTLQIARARFPGMPN--------------SLDALCRRFSIDLSARTTHNA 153 Query: 178 KADVYATLALV 188 D + Sbjct: 154 LLDCKLLAEVY 164 >gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23] gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola 23] Length = 285 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 7/123 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T VI+D ET G D+ DR Q + ++V + E + +P + Sbjct: 5 LTKPLVIFDLETTGLDLVKDRIIQISYIKVYPDGHE-ERGNEL---VNPEKPIEPMITQL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + + F+ G+N+ FD F R D Sbjct: 61 TGISNDDVKDKP-TFKQLGAVLAEKFT--GCDFAGFNSNHFDIPLLAEEFLRAGVDFDFS 117 Query: 121 SWD 123 Sbjct: 118 KCK 120 >gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae FF5] Length = 204 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 52/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR------- 105 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178 S L + R GA + KL L + AH A Sbjct: 106 IERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + + Sbjct: 153 ADAEMAANLTAYLTNELRQTH 173 >gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1] gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit family [Aromatoleum aromaticum EbN1] Length = 478 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 29/190 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G + D + A + + + D +TGI+ Sbjct: 18 LAFVDIETTGTTASHDSITEIAIIEIGEDG--VREWSSL---VRPDSRIPDYIERMTGIS 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + + +N RFD + R F R D Sbjct: 73 NHMVADAP-TFAELAETVFDRLHER---VFVAHNARFDHGFIRAAFRRLGVD-------- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +L +R L L +G+E H A D A Sbjct: 121 --FRPKVLCTVRLSRRLY----------PQERRHNLDALIARHGLEVEAQHRALGDAQAL 168 Query: 185 LALVWLIREK 194 + + Sbjct: 169 WQFWQRVHRQ 178 >gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 864 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 27/206 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V++D ET G D D + A ++ + ++ + P E+ + Sbjct: 497 QNKLVVFDVETTGLDTTKDEIIELAALKAGKDG-VVDEFHEYLRN----SKPVGESFQVH 551 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q L G + F + ++G+N D Sbjct: 552 GISDQVLLEQGKPPEKSLASFTNFIDDCD--LVGHNVNYDITMVENQCKKLLNQDLELHG 609 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D +D+ R + + L+ L I H A DV Sbjct: 610 Y-------DTVDISRRYFPRLE-------------KYNLESLCEDLQISSKPTHRAMDDV 649 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207 AT L+ ++ EK E +Y N Sbjct: 650 EATFELLQILLEKIKPGIEKRKEYVN 675 >gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] Length = 1429 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 28/195 (14%) Query: 3 NHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V +D ET G + + D + A ++ IE+ F P V I Sbjct: 760 KTYRVVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRPITPRTVGI 812 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYR 112 IT V+ ++ I Q+ + ++G+N D+ R Sbjct: 813 HHITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALEC 871 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALAN 167 + + +G D L ++ A + ++ P D A+S +L L A Sbjct: 872 HAPEC----QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITAL 927 Query: 168 GI-EHVNAHDAKADV 181 + + H A D Sbjct: 928 NVRPEGDLHRADTDT 942 >gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] Length = 450 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 30/218 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D E G DR + A +R D + +E +TGI+ Sbjct: 20 VILDLEATGGHFMHDRITEIAFLRFD--GQNVERFTQL---VNPQKEISEFVTQLTGISN 74 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + A+ I ++ +N RFD RN F R Sbjct: 75 EMVANAP-TFADVIPHILPMLR---GSLLVAHNSRFDYTLLRNEFRRAGVPFAT------ 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 L ++ P+ + L +A G H A ADV Sbjct: 125 ----PTLCTVKLSRTLYPNEHK----------HNLDAVANRFGLTSDGKRHRAWADVAIL 170 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + ++ + + + +N+ Sbjct: 171 ADFLQAALLDNADRWQKIALSLIQPPVLPTNIPENIHH 208 >gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] Length = 238 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V +T F+C P Y + A+ I G+T Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNTLHFYCNPN--YEVEAGALAIHGLT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 70 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQN 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 126 VARIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 171 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200 >gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 235 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 28/203 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + ++ D ET G D LD+ + V+V + + E + F + + + Sbjct: 1 MESSYIAVDLETTGLDPKLDKIIEIGAVKV-VKGQMTEHFQTF---INPFRKLESRVIIL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ ++ I +F + +++ FD + + Sbjct: 57 TGISDRQLEASPG----IGEVIGEFLEFAEGLPVLGHHVIFDYSFLKRAAINEG------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D L + R L GIE +H A AD Sbjct: 107 -YSFERRGIDTLKLARRF-------------MPPEEKKNLGAACGYFGIEQTMSHRALAD 152 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 A L + ++ K ++ Sbjct: 153 ASAAHGLYQEMAKRYGKEAPEIF 175 >gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A] gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A] Length = 379 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 181 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 216 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 217 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 270 Query: 184 TLALVW 189 LA++ Sbjct: 271 LLAVLK 276 >gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB] gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB] Length = 263 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 17/217 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G DV DR A + + E A + GIT Sbjct: 8 VAFDLETTGVDVEQDRIVTAAAIDLGA-----EKPLTLEWLADPGIEIPEGATAVHGITT 62 Query: 66 QKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + A G + ++ + V + + +N+ +D R + Sbjct: 63 EHAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQ---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 L V+ + + +L LA + AH D Sbjct: 119 -DRLDGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDA 177 Query: 182 YATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLI 215 + + I + + + + +L Sbjct: 178 LMAARIAYRIGSLAHMPKLEWPQSIRFNRRPRFHELD 214 >gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct] Length = 230 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 62 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192 >gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 797 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 77/232 (33%), Gaps = 28/232 (12%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV+ D ET G V R Q + ++ + ++ E F L D + +T Sbjct: 5 DTFVVVDLETTGHSVKKGGRIIQIGMTFI-KKRQIVDHFESF---VNPGQLIDRQIQQLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ + E E + + +I +N+ FD Y + F R + Sbjct: 61 HISQKDVQNAPYFE-EIAPLLQNLLQN---TVIIAHNVNFDYPYLNDEFERTGF------ 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ D + + + A ++L DL I NAH A AD Sbjct: 111 QLLKSAAIDTVQLAQI-------------LFPMAPGYRLLDLTTYLNITLKNAHRANADA 157 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 +AT L +K +L + + L Q LVH Sbjct: 158 HATALLFLKFWKKLEELPDITLKQLQQGDWPLLRQTQQFLKLVHSKNKQNFG 209 >gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 203 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G + R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPSSSCRATEIA-VVILEQGRIVERYQSLM---NAGVRVPAFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + +++F + +N FD + R Sbjct: 57 TGISNAMLRSAPPAE-QVMNEVNEFV---GITPLLAHNAAFDQKFWDFELGRI------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + F+ + A + KL L G+ H AH A A Sbjct: 106 -------------KRTRLQNFACSLLLARRLMPAAPNHKLGTLTSFAGLPHTGQAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D LV + + Sbjct: 153 DAEMAANLVAHLAGELRHKH 172 >gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 79/290 (27%), Gaps = 39/290 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D D + V+ D + + F PE ITGI Sbjct: 45 ILLDTETTGLDHRKDEIIELGMVKFDYTPDGRIVGVRDTFAAFDEPSAPIPPEITAITGI 104 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +A S + + I +N FD ++ + Sbjct: 105 TDEMVAGQRIDDAAVSAFV------DDAVITIAHNSGFDRKFAERYW------------- 145 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A+ + R+ G +L L G H AH A D +A Sbjct: 146 ----------PVFEHKAWGCSATEIDWREHGFAGAQLGYLLNGTGFFH-QAHRAVDDCHA 194 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 L ++ + L + ++ Q L R Sbjct: 195 LLEVLDFVLPTTGAPALALLLETARRPTLRVWAEQTAFEL----KDSLKRRGYRW---ND 247 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK 293 R K I N SG L + + + S L + Sbjct: 248 GSDGRPKSWFIDVNESGLDDEIAFLRAEIYMREVEPSVQRLTAFTRFSCR 297 >gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2] Length = 658 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 92 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 146 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +F + + +N RFD + + + ++ Y Sbjct: 147 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 196 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D L + R++ A ++KL L+ +H A AD A Sbjct: 197 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 245 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 246 TVDVLHGLIDRVGNLGVTTLE 266 >gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3] gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1] Length = 597 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 31 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +F + + +N RFD + + + ++ Y Sbjct: 86 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D L + R++ A ++KL L+ +H A AD A Sbjct: 136 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205 >gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2] gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4] gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL103PA1] Length = 590 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 24 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +F + + +N RFD + + + ++ Y Sbjct: 79 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 128 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D L + R++ A ++KL L+ +H A AD A Sbjct: 129 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 177 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 178 TVDVLHGLIDRVGNLGVTTLE 198 >gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] Length = 633 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 67 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 121 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +F + + +N RFD + + + ++ Y Sbjct: 122 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 171 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D L + R++ A ++KL L+ +H A AD A Sbjct: 172 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 220 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 221 TVDVLHGLIDRVGNLGVTTLE 241 >gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202] gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Propionibacterium acnes KPA171202] gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1] gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1] Length = 633 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V + C +TGI Sbjct: 67 TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 121 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +F + + +N RFD + + + ++ Y Sbjct: 122 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 171 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D L + R++ A ++KL L+ +H A AD A Sbjct: 172 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 220 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + ++ L + Sbjct: 221 TVDVLHGLIDRVGNLGVTTLE 241 >gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] Length = 449 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 65/217 (29%), Gaps = 44/217 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A +R + E + V +TGIT + Sbjct: 2 VVDLESTGGNLYQDRVTEIAFLRFEN-----GRVEHYEQLINPGKPIPEFVVQLTGITNE 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + + I +I +N RFD + R+ FYR D Sbjct: 57 MVAQAPA-FDQIAPDILPLLR---GSLIVAHNSRFDYTFLRHEFYRAGIDFAA------- 105 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI+ + H A ADV A Sbjct: 106 ---PALCTVQLSRRLYPQFYK----------HNLDSIISRMGIQTDDRHRALADVLALAD 152 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 ++ K + D T + Sbjct: 153 ---------------YLEHSLKEKTSDEWDNHCRTLM 174 >gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] Length = 255 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 49/194 (25%), Gaps = 30/194 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW------EKIESTEVFFCKPADDYLPDPEA 57 FV++D ET G V D GV + E VF A Sbjct: 61 TFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPIPVLA 120 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITGI + F + ++ + I FD + Sbjct: 121 REITGIDDDMVFSQPT----IYPVLDDFLDFIDGAVLVAHGIAFDVGFLDK-------YL 169 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + D + + R + F + L L GI H A Sbjct: 170 RPLRTKLYHPVIDTITLSRVLEPFRAE-------------HSLDALVADYGITPRRRHSA 216 Query: 178 KADVYATLALVWLI 191 D T L + Sbjct: 217 LGDAQMTADLFAAM 230 >gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018] Length = 301 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 32/193 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET G D + +RV E ++ + D +TG Sbjct: 14 DDYCVLDTETTGLSAYYDEIIEIGILRVRNN-EIVDRYDQL---IKPSIEVDGFITALTG 69 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + F S II +N FD + F + Y Sbjct: 70 ITNDMLEDMP-SISSVKNDVLSFISE---DIILGHNTSFDMRFLNEGFKEQLSNQY---- 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D M+ P+ +L DL G+ H N H A AD Sbjct: 122 ---------MDTMQFARKLYPELKH----------HRLSDLTDYLGL-HNNEHRALADCI 161 Query: 183 ATLALVWLIREKK 195 AT L ++ + Sbjct: 162 ATKELYDAVKSRM 174 >gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 188 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 28/175 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F + D ET G +R + +D E +E+ P +T Sbjct: 1 MLKFAVVDLETTGGHGEDNRIMEIGIALMDGS-EIVETYHAL---VDPGKPITPFVRELT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + I +N++FD Y R Sbjct: 57 GITDEMVSGQPQ-FGVIAEHVAALLQDR---IFVAHNVQFDCKYMTAELKRCCI------ 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +R + + R ++ G S+ L L + G+ N H Sbjct: 107 -KFNPARLCTVKLSRRVF-------------PGQPSYSLHKLTESLGLPDFNHHR 147 >gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107] gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107] Length = 237 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 26/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + D A + GI+ Sbjct: 4 IVLDTETTGLEYSQGHRIIEIGCVEL-MNRRLTGRHYHQY--INPEREVDAGAFAVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+R + F + + +N FD + + N S Sbjct: 61 NAMLNDKPV----FARIVDDFLNFVGDAELIIHNAAFDIGFIDHEL--NMLRPGFGSIKG 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + L L G+++ H A D Sbjct: 115 RCGVIDTLLLARNKHPGQKN--------------NLDALCKRYGVDNSQRDLHGALLDAE 160 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 161 ILADVYLAMTGGQTS 175 >gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21] gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21] Length = 1493 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G D P Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDDMGRLI-EHQDYLVKPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A + GI+ + AL G+ E + + I NI FD F+R Sbjct: 61 -DAERVHGISTELALEQGIDLVEVLEKFNIALDKAK--FIVGQNIGFDINIMGCEFHRMG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL----ALANGIE 170 + V+ + + +Q P G FKL +L A G+ Sbjct: 118 I----------ATTMGEKAVLDTCTEVTANLLQLPGGRGGK--FKLPNLTELHAYLFGVP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKK 195 AH+A ADV AT + +K Sbjct: 166 FAEAHNATADVEATTRCFLELIKKN 190 >gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 951 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 34/198 (17%) Query: 2 TNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 N+ +V D ET G LD + A V R E ++ E + Sbjct: 1 MNNRIYVAIDVETTGLQSGLDEIIEVAAV-TFRGHEILDRFEQL---VRPRQAVPLKITR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI P + E + +F N I+G++ N Sbjct: 57 LTGIDPAALAQAPR-FNEIGADLARFI--GNRPIVGHSIGFDLTMLRAQGMQFN------ 107 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +D ++ +S+KL LA GI H +AH A Sbjct: 108 ------QPVYDTFELA-------------TLLLPQVSSYKLSALAAHLGIPHPDAHRALN 148 Query: 180 DVYATLALVWLIREKKPK 197 D T L ++ E+ + Sbjct: 149 DAEVTARLFAMLSERMLQ 166 >gi|315268227|gb|ADT95080.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 201 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 53/187 (28%), Gaps = 22/187 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET G + + + + + EA I GIT Sbjct: 33 VILDTETTGLE-WGCEVVEISIIEARTGLILM---NTLVRPINP---IPAEATAIHGITN 85 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + Q S +I YN+ + Y + Y S Sbjct: 86 EMVADAPL-FFDIAISVAQILS--GRTVIAYNSAFDKKMLCSSAAYSSGEPPYVNS---- 138 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184 D M A + D W L + A GI AH A D T Sbjct: 139 ----DFQCAMLAYAQYKGD---WNHGHGDFKWHSLVNAAKQQGIALEGTAHRALYDCQLT 191 Query: 185 LALVWLI 191 L+ + Sbjct: 192 RELILKM 198 >gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1] Length = 597 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V R + C +TGI Sbjct: 31 TFCVVDLETTGTG-EGAQITEIGAVKV-RGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +F + ++ +N RFD + + + ++ Y Sbjct: 86 TDAMVRPAP-PLSAVLPSWSEF---SRSTVLVAHNARFDIGFLKRAYAQHNYPW------ 135 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ ++KL L+ +++H A AD A Sbjct: 136 GDPTLVDTLALARSV-----------LSRGEVRNYKLSTLSQLFRTTTMSSHRALADARA 184 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + Sbjct: 185 TVDVLHGLIERVGSFGVTTLE 205 >gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2] gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3] gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08] Length = 598 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 26/201 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + + V+V R + C +TGI Sbjct: 32 TFCVVDLETTGTG-EGAQITEIGAVKV-RGGRVEGEFQTLVC---PTGPIPASVQVLTGI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +F + ++ +N RFD + + + ++ Y Sbjct: 87 TDAMVRPAP-PLSAVLPSWSEF---SRSTVLVAHNARFDIGFLKRAYAQHNYPW------ 136 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + R++ ++KL L+ +++H A AD A Sbjct: 137 GDPTLVDTLALARSV-----------LSRGEVRNYKLSTLSQLFRTTTMSSHRALADARA 185 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ ++ + E+ + Sbjct: 186 TVDVLHGLIERVGSFGVTTLE 206 >gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium cf. saccharolyticum K10] gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SM4/1] Length = 251 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 28/202 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D ET G D D+ + V Q + +TG Sbjct: 16 DSYAAIDLETTGLDPKRDKIIEVGACLV-EQGKVKRELSFL---INPHREISERVELLTG 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E E I F + +++ FD + ++ + Sbjct: 72 ITGRMVEHAPGIE-EVIGEIAAFV---GELPLLGHHVIFDYSFLKHAAVNAGLPFEKNG- 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R L I AH A +D Sbjct: 127 ------IDTLSLCRRF-------------MPPEEKKNLSAACGWFQIPRETAHRALSDAK 167 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 A L +R+ + E + Sbjct: 168 AAHLLYQSLRDCHFQENEEAFA 189 >gi|27365569|ref|NP_761097.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|37680285|ref|NP_934894.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|320155964|ref|YP_004188343.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27361717|gb|AAO10624.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6] gi|37199032|dbj|BAC94865.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|319931276|gb|ADV86140.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 238 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 12/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + V D +I + + + E+V I GIT Sbjct: 48 LVALDFETTGLNPNQHDILSIGLVPFD--LHRIRLQQARYWTVKPEDQLHEESVVIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 K R + + + ++ + + + + + + Sbjct: 106 HSKVQRAP----DLIDVLDEVLDCLAGKVVVVHYQHIERPFFDSALRKRINEGIE----- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ G + S +L G+ +AH A D AT Sbjct: 157 -FPLIDTMEIESQWAKQQFGGWLNRLKGKSLPSVRLAQSRRRYGLPDYSAHHALTDAIAT 215 Query: 185 LALVWLIREKK 195 L Sbjct: 216 AELFQAQIAHH 226 >gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 244 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 27/205 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ + DP A+ + G+T Sbjct: 4 LILDTETTGLNARTGDRILELGCVEM-VNRRLTGNNLHFY--INPERESDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + + F + I +N FD + F Sbjct: 61 TEFLSDKPK-FAEIADQFRDFIQDADLII---HNAPFDIGFLDAEFALLGLPP------- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 ++ D + + L L GI H H A D Sbjct: 110 ----------VKTYCGEIIDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 + + + L + + Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184 >gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 240 Score = 87.2 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 32/253 (12%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 N V+ D ET G + R + V + + F D PE Sbjct: 10 NRIVVLDTETTGMNREGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 AV + GIT + + E++ +F + +N FD + F D Sbjct: 67 AVEVHGITDEFLVDKP----EYASVHQEFLEFIKGAELVAHNAPFDTGFMDYEFG--MLD 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 121 PNIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG-MFGAS 233 H A D + + + L + + I+ + ++ S A Sbjct: 167 HGALLDAEILADVYLFMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRASADELEAH 226 Query: 234 RSNTALIAPVAWH 246 + L+ WH Sbjct: 227 QKRLELVNDCIWH 239 >gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] Length = 616 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 62/201 (30%), Gaps = 27/201 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D VR+ + E F ++V + GI Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEE--TFDQLVNPRRPISLDSVRVHGI 479 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P +E E R ++F +T ++G+N + + Sbjct: 480 QPVLLQDKPPIE-EVLPRFYRF--ARDTVLVGHNVAFDLKFIRQKEKALGLRFDQ----- 531 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +LD M P+ + L +LA A GIE V H A D Sbjct: 532 ------PVLDTMLLAAVVDPERQH----------YGLDELAAAFGIEPVGRHSALGDALI 575 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ + + + Sbjct: 576 TAELLLRLLPLLEQRGIHTLR 596 >gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88] gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88] Length = 380 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 82/299 (27%), Gaps = 34/299 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV+ D ET G D+ + ++ + + +E A I Sbjct: 82 DEFVVIDLETTGLYPVTDKIIEITAIKY-KSGQIVEKYNTL---INPKINIPKRATEINN 137 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT V+E + + +F + +N FD + + Sbjct: 138 ITNNMVKDSPVIE-DVLPELLKFIKE---YPLVAHNASFDIKFLNANLALINREI----- 188 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D L + RA+Y F + KL + I N+H A D Sbjct: 189 --KNVAIDTLQLSRAMYTFL-------------PNHKLTTIKEHLCISEDNSHRALPDCI 233 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN------KNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 T + K + + K+ L K L H + Sbjct: 234 TTAEIYLDYCYKANNNLKEFNELEKACFKVIKDMLNKNNRDTEFLKLKHTGNYTDIAYFY 293 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 + V +Y + I + + S R+ +E I ++ Sbjct: 294 PLVRIKVGDRKQYFLTNIPLEELKEHETEKPSKSENFKSRIHLKSEEDLKPFEEYIIQI 352 >gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] Length = 1445 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + + R Q A D I F +P +P Sbjct: 2 YLIFDTETTGLPKSWNAPITDTDNWPRCIQIAWQLHDEMGRVI-EHNDFLIQPEGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A ++G+ E ++ T + N+ FD F+R Sbjct: 61 -DAERIHGISTELAQQEGITLEEGLALFNEVLQK--TKFVVGQNVEFDLNIMGCEFHRLA 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 ++ + L V+ + Q P G FKL L GI+ Sbjct: 118 TETN----------LNQLPVLDTCTEKTALLCQIPGGRGGK--FKLPTLTELHKHLFGID 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FAEAHNATADVEATTRCF 183 >gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM 2075] gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM 2075] Length = 240 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 16/194 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D+A D VR+ + P + ++ I G+ Sbjct: 46 SFVVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPAS--SITIHGL 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ+ G A+ + F I+ +N FD ++ + + + Sbjct: 104 TPQRLA-AGRPLAQVFDDLAGFI---GADIVVAHNAGFDLHFIDRHMRAHHGLALQNL-- 157 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L +R A + +L +A G++ H A D Sbjct: 158 -------ALCTLRLCRALLLPSDPF-GVGRHKGQCRLDAIAERFGLDTPQRHTAIGDALV 209 Query: 184 TLALVWLIREKKPK 197 T + + + Sbjct: 210 TALIFQRMLAMMEE 223 >gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113] gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113] Length = 243 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 28/194 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYLPDPEAVFITGI 63 +I D ET G + R + GV + T + F C + D A+ + G+ Sbjct: 4 IILDTETTGLEPKEGHRIIEIGGV----ELNCRRRTGQTFHCYLNPEREVDEGALKVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E + F + +N FD + + Y S Sbjct: 60 SNEFLSDKPR-FIEIAEEFLAFIKGAE---LVIHNAPFDVGFLDHELY--LLGSNWGKVS 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181 D L + R + + L L GI++ + H A D Sbjct: 114 VNCQVLDTLQLARQRHPGQKN--------------NLDALCKRYGIDNSRRDLHGALLDA 159 Query: 182 YATLALVWLIREKK 195 + + + Sbjct: 160 EILAGVYLAMTGGQ 173 >gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 204 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 52/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR------- 105 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178 S L + R GA + KL L + AH A Sbjct: 106 IQRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + + Sbjct: 153 ADAEMAANLTAHLTNELRQTH 173 >gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 730 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 51/188 (27%), Gaps = 27/188 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 D ET G DR Q + VD + + E+ + + GI Sbjct: 36 LDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEML---VDPGIAVPAASTAVHGI 92 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A + F + I+GYN FD + N R + W W Sbjct: 93 NDAMLADA-KPIAVALPALRSFINK--RIILGYNIG-FDLAFLTNEAKRQGLE---WKWS 145 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L V+ A L LA G+ + H A D Sbjct: 146 GALCLRQLATVLLGPEAMLMIAD-------------LDALAAHYGVPVIGRHTALGDATI 192 Query: 184 TLALVWLI 191 T + + Sbjct: 193 TAQVYHKM 200 >gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] Length = 214 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 51/194 (26%), Gaps = 28/194 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G A DR + A V+V Q ++ + P +T I Sbjct: 6 FAVVDVETTGTRAAGGDRITEIAIVQV--QGGQVGEVYSQLV--NPERPIPPYITSLTHI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + + I +N FD + R Sbjct: 62 TWDMVRDQP-TFREITSNVLDRLR---GSIFVAHNAPFDWRFVSEEVRRG---------S 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L +R A + L + GIE H A D A Sbjct: 109 GQELSGPRLCTVRFARA----------ALPQLSRRSLDHVTRYFGIEIAARHRAAGDALA 158 Query: 184 TLALVWLIREKKPK 197 T + + + Sbjct: 159 TAHALCRMLNIASE 172 >gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] Length = 249 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 65/231 (28%), Gaps = 38/231 (16%) Query: 2 TNHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYL 52 TN +VI D ET G + R + V E I + D L Sbjct: 6 TNRYVILDTETTGMNQSGGPVYIGHRIIEIGCV------EVINRRLTGNHYHVYIKPDRL 59 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 D EA+ + GIT A ++ F + +N FD + + F + Sbjct: 60 VDEEAIRVHGITDAFLADKP-PFAAIAQEFRDFIRGAE---LVIHNASFDVGFIDHEFNK 115 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-- 170 + + D L + R + L L GI+ Sbjct: 116 LG---WTERVKDICRVTDSLALARGQFPG--------------KRNSLDALCTRFGIDNS 158 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 H H A D + L+ + +L + N + M Sbjct: 159 HRTLHGALLDAEILADVYLLMTGGQTRLELHNTVNDNNSASSASAQQLKMI 209 >gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] Length = 249 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 28/199 (14%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G DR + V + + T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLSAKDGDRVIEIGAVEM-KDLIPTGRTFHQYIHP-GDREIHPDALRVHGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + E + F ++ +N FD + + R + Sbjct: 62 MERLADEPR--FEAVGQ--SFIDFCGDAMLVAHNAPFDIGFLNAEYARMNLPP-----CD 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D + R + + L L I N H A D Sbjct: 113 PELVLDTVQAARKKFPGA--------------RVSLDMLCDRFNISRANRVLHGALLDAR 158 Query: 183 ATLALVWLIREKKPKLFEY 201 + + + Sbjct: 159 LLAEVFIELMGGAQVKMGF 177 >gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] Length = 951 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D+ET G + + D Q ++ ++V+ P +TGI Sbjct: 2 KYAVLDFETTG-NQSSDDIIQVGLAIIEPDRSI---SQVYRSFVKPGVPIPPFITGLTGI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + N ++ +N+ FD Y ++ + Y + Sbjct: 58 TDEDVKDAP----ELDEVMMEMVPLLNDVVLVGHNVAFDFNYLQSALDKTGYLPF----- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +D ++ TS++L +A +EH H A +D A Sbjct: 109 -TGRILDTMDFLKI-------------LFPSLTSYQLGMVAAEFEVEHERPHQADSDALA 154 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T + E+ +L Sbjct: 155 TALIFLKCLEECDRLPLLTLQ 175 >gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] Length = 307 Score = 86.8 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 32/193 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET G D + +RV E ++ + D +TG Sbjct: 20 DDYCVLDTETTGLSAYYDEIIEIGILRVRNN-EIVDRYDQL---IKPSIEVDGFITALTG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + F S II +N FD + F + Y Sbjct: 76 ITNDMLEDMP-SISSVKNDVLSFISE---DIILGHNTSFDMRFLNEGFKEQLSNQY---- 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D M+ P+ +L DL G+ H N H A AD Sbjct: 128 ---------MDTMQFARKLYPELKH----------HRLSDLTDYLGL-HNNEHRALADCI 167 Query: 183 ATLALVWLIREKK 195 AT L ++ + Sbjct: 168 ATKELYDAVKSRM 180 >gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A] gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A] Length = 284 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 7/159 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T V++D ET G D+ DR Q + ++V ++ E +F + E + Sbjct: 5 LTKPLVVFDLETTGLDLVNDRIIQISFIKVLPDGKE-ERENIF---INPEKPIPTEVTQL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + ++ + F+ G+N+ RFD F R D Sbjct: 61 TGISDKDVADAP-TFRQKAKELADRFT--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +++ + R A + ++ + K Sbjct: 118 KSRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFEAHK 156 >gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] Length = 251 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 28/202 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D ET G D D+ + V Q + +TG Sbjct: 16 DSYAAIDLETTGLDPKRDKIIEVGACLV-EQGKVKRELSFL---INPHREISERVELLTG 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E E I F + +++ FD + ++ + Sbjct: 72 ITGRMVEHAPGIE-EVIGEIAAFV---GELPLLGHHVIFDYSFLKHAAVNAGLPFEKNG- 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R L I AH A AD Sbjct: 127 ------IDTLSLCRRF-------------MPPEEKKNLSAACGWFQIPRETAHRALADAK 167 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 A L +R+ + E + Sbjct: 168 AAHLLYQSLRDCHFQENEEAFA 189 >gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586] gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586] Length = 244 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 30/224 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRH--FHVYLRPDRLIDPEAYNV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + AE + F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TYAEVADDFIDFIRGAE---LVIHNASFDIGFMDYEFRLLGRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + + + L + + ++ + P Sbjct: 166 LDAEILAEVYLAMTGGQTSLAFSMEGESQQQTVQAETIQRISRP 209 >gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] Length = 158 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 8/116 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G D A +R + V+VD + + + E LP + TGIT Sbjct: 48 YVVIDLETDGLDAAKNRIIEIGAVKVD--GQTVSTFEQLIV--HPHRLP-KKITDPTGIT 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G EAE + F + +I Y+ FD + +R + Sbjct: 103 DTLLADGGRPEAEAIKAFLAFIGSDD--LIRYHV-DFDVQFINQTLHRMDIEPLIR 155 >gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 206 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 26/195 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI D ET G + + + A ++ + I+ KP ++++P + + +TGI Sbjct: 11 TFVIIDLETTGLSASNNSVIEVAAIKY-QSGMIIDQLHHLT-KPRENFIPS-KVINLTGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + ++ F I+ +N +FD + Sbjct: 68 TNAMVIDKPYFE-DIYPEVYNFLKDS---IVVAHNAKFDISFLSE--------------- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + +R Y + + + + S L L GI H A +D A Sbjct: 109 --VHKIVFKNNLRLHYICTDNLARRIFPEIQKKS--LSSLTNYLGINFKQKHRALSDAQA 164 Query: 184 TLALVWLIREKKPKL 198 TL + E Sbjct: 165 TLQAFQTMLEYLQDY 179 >gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] Length = 241 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 57/195 (29%), Gaps = 29/195 (14%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + A V + F + EA + G T Sbjct: 5 LVLDTETTGFDPLTGDRVLEVAAVEI-VNLVPTGRH--FHMLIDPERDVPEEATKVHGFT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE + + F I +N FD + + Sbjct: 62 REMLIGKPK-FAEIAPAMLDFL---GDDPIIAHNAPFDFGFLDWELKKAG---------- 107 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 LD R + + ++P L L GI++ AH+A DV Sbjct: 108 ----HKALDRARMVDTLALAKKRFPGLP-----NSLDALCRRYGIDNSMRTAHNALLDVQ 158 Query: 183 ATLALVWLIREKKPK 197 + + K Sbjct: 159 LLAQVYLELMGGKQP 173 >gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] Length = 239 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 27/185 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G D ++R + GV + F +PA DP A + GI+ Sbjct: 4 IVFDTETTGLDPDVERVIEIGGVELW-NHIPTGKNYHAFIRPA-GRKVDPAAFDVHGISD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + +FFS + +N FD + R + Sbjct: 62 DFLADKPL-FSEIADEFLEFFSGAK---LIAHNAAFDVRFLNAELKRIDQPPI-----DP 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVYA 183 + D L + R + +P L L ++ + H A D Sbjct: 113 SVVIDTLPMARRKFPMAPAT--------------LDALCSRFSVDTSRRDKHGALLDSEL 158 Query: 184 TLALV 188 + Sbjct: 159 LAEVY 163 >gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu] Length = 242 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE +I F I +N FD + F R + Sbjct: 61 TEFLSDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFTEHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180 >gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] Length = 935 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 75/247 (30%), Gaps = 29/247 (11%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 N +VI D ET G DR Q A +V E ++ + D + Sbjct: 1 MNRYVILDLETTGVAYDKGDRIIQIA-YQVLEDQEVLKRFSTY---INYDKPVPAFIQSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + E E + I +N+ FD + Y Sbjct: 57 TGISGEHLKNAPLFE-EVAPEILSDLEE---AYFVAHNVEFDLKFLNESLEDAGY----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ R S++L DLA H H A +D Sbjct: 108 -ASFQGPVIDTVELARIC-------------LPSEDSYRLSDLAKTVQATHTAPHQADSD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTAL 239 V AT AL + +K L D+ K + + + FG R Sbjct: 154 VEATRALFNELFDKISGLPSETLDHLISLSPHFKSDITEILRECRQHTVAFGFDRYRGMA 213 Query: 240 IAPVAWH 246 I V H Sbjct: 214 IKSVHPH 220 >gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] Length = 791 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 84/250 (33%), Gaps = 37/250 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E + ++ Q V + +E+ P +T Sbjct: 1 MTRYAVVDLEATDAHSSENKIIQIGIALV-EGGKIVETYSTE---VNPHEPLLPRISELT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ ++ +E + + + + + +N RFD F + Sbjct: 57 GLSDKQLKSAP-DFSEVASEVRKLLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N R D +D+ R Y + L+ L+ + H + H A +D Sbjct: 109 --NEMLRVDTVDLARVFYPTFE-------------KYGLEALSEKLDLAHDHPHAAVSDA 153 Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231 YAT L+ I EK KL + + + +K+ L++ +D + P Sbjct: 154 YATAELLIRIEEKIQKLPRSVLEELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNI 213 Query: 232 ASRSNTALIA 241 A+R + ++ Sbjct: 214 ATRKFKSSVS 223 >gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] Length = 246 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 53/195 (27%), Gaps = 26/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G + R + V + + D A+ + GI+ Sbjct: 4 VVLDTETTGLEPNDGHRVIEIGCVEM-ENRRLTG--NNLHLYLNPEREIDAGALAVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F + + +F + + + +N FD + + R Sbjct: 61 TEFLADKPT----FDKVVDEFLAFVDGAELVIHNAPFDVGFLNHELRRLGARYGTIEQR- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R + + L L +E H H A D Sbjct: 116 -CGVLDTLVMARQKHPGQKN--------------NLDALCRRYFVENGHRELHGALLDAE 160 Query: 183 ATLALVWLIREKKPK 197 + + + + Sbjct: 161 ILADVYLAMTGGQTR 175 >gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P] gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P] Length = 275 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 86/300 (28%), Gaps = 33/300 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ V +D ET G ++A DR + A ++V K E + ++ + Sbjct: 5 LSKPIVFFDLETTGVNIATDRIVEIAVLKVFPNGNK----ESKTWLVNPEMEIPQASIDV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + ++ + + + + G+N+ RFD R D Sbjct: 61 HGITNEKVASEP-TFKMLAQEVSKLMA--GCDLAGFNSNRFDIPLLAEELMRAGIDFD-- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G D+ + + G E AH A AD Sbjct: 116 --MKGRKAIDVQVIFHKKEQRTLGAG----------------YKFYCGKELEGAHGAAAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239 AT ++ + L + + D + F + Sbjct: 158 TNATYEILKAQLDTYADLENSVAALSEFSTHGVRADFAGFILMNDAQQEIFSFGKHKGRT 217 Query: 240 IAPVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + V +P Y + + + + + +R+ + + + N Sbjct: 218 VEEVFNENPGYHNWIQNADFPLYTKKVL----KGIKERMTAPKATMSDSEKLQALQQKFN 273 >gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 203 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPNHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 + +F+ + GA + KL L + AH A A Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + Sbjct: 153 DAEMAANLTAYLTNELRNTH 172 >gi|258406595|ref|YP_003199337.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium retbaense DSM 5692] gi|257798822|gb|ACV69759.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium retbaense DSM 5692] Length = 233 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 30/204 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEA----- 57 F + D E G VR++ + ++ C P+A Sbjct: 35 SFCVLDTELTGLR-RRHEIISIGAVRIEHLALKPLDRFYTEVC---------PKAWTKTG 84 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 I I+PQ+ + + + + T ++ +NI D + + ++ Sbjct: 85 TLIHRISPQQCQDAPK----IGKVLPELIAYLGTSLLIGHNIALDLQFLQKACKKHLGHP 140 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHD 176 +D +R + + S++LQ+LA A G+ AH+ Sbjct: 141 L---------VHPCIDTLRLARVYEESRWESYYDRFTLRVSYQLQELAQAYGLPCFPAHN 191 Query: 177 AKADVYATLALVWLIREKKPKLFE 200 A +D T L + K + Sbjct: 192 AASDALQTAYLFVYLVHKLRETHP 215 >gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 86.8 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V ++ ++ + F + + A+ + G+T Sbjct: 4 IVLDTETTGLNPRTGDRILEIGAVELN---NRMLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F + I +N FD + F R Sbjct: 61 TEFLSDKPK-FAEIAEEFRAFIAGAELII---HNAPFDIGFLNAEFKRLNLPPVHEQV-- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + ++ L L G+ H H A D Sbjct: 115 -HGVIDTLVQAKEMHPG--------------KRNSLDALCDRYGVSNAHRKLHGALLDSE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLADVYLAMTRGQNS 174 >gi|189500655|ref|YP_001960125.1| Exonuclease RNase T and DNA polymerase III [Chlorobium phaeobacteroides BS1] gi|189496096|gb|ACE04644.1| Exonuclease RNase T and DNA polymerase III [Chlorobium phaeobacteroides BS1] Length = 185 Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 21/195 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ + D ET G + A Q + I C P D A+ I Sbjct: 1 MSKKVLYIDVETTGTNPAKHGIIQIGAIM--EVSGIIAEELNLKCAPHSGADIDDHALTI 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRN 113 TG + ++ + E + QF + + C N+ FD + + F + Sbjct: 59 TGTSREELTHR-MSSKEALLQFKQFLNRYVEQYDREDKCYPAGYNVHFDLDFIQQWFKMH 117 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D Y R D L V+ ++ + +KL+ + GI Sbjct: 118 G-DKYGIGSYVNWRRLDPLPVLF---------MKDFTGALHLPDYKLETVCRHYGIRLE- 166 Query: 174 AHDAKADVYATLALV 188 AHDA +D+ AT L+ Sbjct: 167 AHDAFSDIRATRELL 181 >gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1443 Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 69/493 (13%), Positives = 155/493 (31%), Gaps = 62/493 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D +F G + + I+S ++F +T I Sbjct: 395 TYCVFDLETTGLSSRFDHIIEFGGQ-IMKDRTCIKSLQLF---VKPPIALSAFTTELTNI 450 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + AE I +F I+ +N FD + R Sbjct: 451 SEENMKNA-KPFAECVDEILEFI---GDSILVAHNASFDYGFLNAELERIGRKPL----- 501 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D LD+ R++ ++L +LA GI + AH A D Sbjct: 502 -MNPVIDTLDLARSMM--------------DRKGYRLGNLARQYGIRYDEDVAHRADYDA 546 Query: 182 YATLALVWLI-----------REKKPKLFEYLYDYRNKNQ---LRKLIDIQNMTPLVHVS 227 + + + + + + R+K+ + + ++ + L+ +S Sbjct: 547 EVLAQVFMHMLNDLKHIKTLKQLQDMQDPDCFNKVRDKHVTILAKNMAGLKELFELITLS 606 Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287 S + + VA + + ++G++ + + ++ T ++ Sbjct: 607 HTEYLSYNRKSTANVVAEPRIIRKEIEKRRVNGNLLIGSSCVNGEVFDMAQTRSEKELAE 666 Query: 288 VPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN-LTLLRQQTNLRDRFKAIYN 346 + + P+ + +D R E L+++ + + A + Sbjct: 667 ------VMQFYDYIEIQPLANYRFLVERNSIVDEARLKEILLSIVEKAEEMGKIIVATSD 720 Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFFRY 403 Y ++ + +Y A + I + +L +D L E + Sbjct: 721 AHYVHPNEKLIRDIYINSQAIGGMRHALYIYNQERRRKFKSPDQHLRTTDEMLKEYAWLG 780 Query: 404 RARNFPHTLSE----KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEG 455 + R + + ++ + + K L IE KL+ + + + G + Sbjct: 781 QQRAYDMVIKNTKAIADQIEVIRPVKDALYPPDIEGSDQKLREICFENAHKKYGPVLPDI 840 Query: 456 LINALYEYLQWVI 468 + L L +I Sbjct: 841 VEKRLNRELDSII 853 >gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 254 Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 22/186 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GR+ R + VD I E EA + G+T ++ Sbjct: 30 FDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLA---DPGIEIPAEASEVHGVTTER 86 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G AE +R + + + N +D R Sbjct: 87 ARLEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIPQL------- 139 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +R+ +LD P + L L + NAH + AD ATL Sbjct: 140 -NRFPVLD---------PYIMNKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATL 189 Query: 186 ALVWLI 191 ++ + Sbjct: 190 RMLDAM 195 >gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 461 Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 29/251 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + + + D + + I+ + P +TGIT Sbjct: 2 YTVIDIETTGNGFKGQKITEISIFVFDGK-KIIDEFTSL---INPEQNIPPFITNLTGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E ++++ + I +N+ FD R+ F +D R Sbjct: 58 NAMVRYAPKFH-EIAKKVEELTRD---TIFVAHNVNFDYNIIRDEFKSLGFDFKRKK--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L ++ + I H AK D AT Sbjct: 111 -------LCTVRLSRKI----------MPGLRSYSLGNICIDENIPINGRHRAKGDAEAT 153 Query: 185 LALVWLIREKKPKL-FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 L + E+ + R++ + + + + + +++ I V Sbjct: 154 TELFRRLIERDDSFIINSFLNPRSRQATLPPLLDKKVVDNLPETFGVYYFKNSAKEIIYV 213 Query: 244 AWHPRYKDSVI 254 K VI Sbjct: 214 GKANNIKQRVI 224 >gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1] gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea MMB-1] Length = 235 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 65/223 (29%), Gaps = 33/223 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G D R + V E I F D + EA + Sbjct: 4 VVLDTETTGIDPKQGHRIIEIGCV------EMIGRKLTKRHFHVYINPDREVEEEAFQVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E ++ F I +N FD + + F Sbjct: 58 GISNEFLADKPRFH-EIAQEFLDFIRGAELII---HNAPFDVGFMDHEFSMLGNFPKTR- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 + +D L R + + + L L GI+ H H A Sbjct: 113 --DVCEIFDSLVFARKKHPGAKN--------------NLDALCRRYGIDNSHRELHGALL 156 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + L+ + L + D + +I+ ++P Sbjct: 157 DSEILADVYLLMTGGQTSLGLSMNDGSEGGDSDNVGEIRRLSP 199 >gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] Length = 263 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 28/204 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V D ET G D D+ + V V E E+ F D +TG Sbjct: 24 DSYVAIDLETTGLDPKHDKIIEIGAVLV-IDGEIKETFSTF---VNPRRELDGRIRELTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + I + + ++I FD + + Sbjct: 80 ITGEMTAGAP----DIGDVIGRVVEFCRDLPLLGHHIIFDYSFLKRAAVNKGL------- 128 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 S D L + R L++ + GI+ +AH A AD Sbjct: 129 VFEKSGIDTLTLCRRF-------------MPEEEKKNLENASRYYGIKQTDAHRALADAL 175 Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206 L ++ + + Sbjct: 176 TAHLLYRNVKRSHFSSAPEAFRCK 199 >gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM 1740] gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes] Length = 206 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 34/215 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFIT 61 F I D ET G A D+ + + + + I+S E + FCK +Y+ IT Sbjct: 14 QRFCIVDVETNGSLPAKDQIIEIGAILY-QGGKIIDSFESYVFCKEVPEYI-----TKIT 67 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ E R F + +N FD + + R+ D Sbjct: 68 GITSEELKDAP-SMKEVLTRFRLFL---GDAVFVAHNALFDYGFLGAMMKRSGMDRLHN- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D+ R + A + L L I +H A AD Sbjct: 123 -----RKLCTIDLAR--------------KTIPADRYGLSFLNEFLEIHTEVSHRAYADA 163 Query: 182 YATLALVWLIREKKPKLF---EYLYDYRNKNQLRK 213 L + + P E L + + + Sbjct: 164 LTALRVFEESLRRVPSEIITTEELISFSSPKGAKN 198 >gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 230 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + F + Y N Sbjct: 62 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWEFSLLKNNKYGTLEQN 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192 >gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] Length = 234 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 35/214 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G D DR + V E ++ F + E V I Sbjct: 4 IIFDTETTGLDKDNDRIIEIGCV------EMVDRYLTGRQFHVYLNPQGVIIPDEVVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + + + + +F + ++ +N FD + R Sbjct: 58 GLTNERLKGEKK-FDDIADELLEFI---DGAMMIAHNANFDISFLNAELKRVNKPLISID 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + P+ L L GI++ + H A Sbjct: 114 N-----VIDTLAMARRKFPMGPN--------------SLDVLCKRFGIDNSHRILHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + K + Sbjct: 155 DAEILADVYIELIGGKQGTLGFYNSNGRHLNTEN 188 >gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 234 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 56/218 (25%), Gaps = 27/218 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G A R + A V V + D D A + GIT Sbjct: 4 IFLDTETTGLYPAQGHRIIEIAAVEV-INRRITSQH--YHVYLNPDREIDAGAQEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ F I +N FD + R Sbjct: 61 LEFLQDKPR-FADVVGEFLDFVQDSELII---HNAPFDVGFLNAELGRIEKPGIESVASG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + + + + L L GI++ H A D Sbjct: 117 ---IIDTLKMAKEMRPGQRN--------------NLDALCRHFGIDNSKRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 + + + L + D N + IQ + Sbjct: 160 LLADVYLAMTRGQESLIIDMLDTPVHNDDNDALQIQAI 197 >gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] Length = 255 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 59/202 (29%), Gaps = 28/202 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN +V D ET G + LD+ + A +RV V +T Sbjct: 13 TNSYVAIDIETTGLEPRLDKITEIAALRV-VDGAVEGRFVTL---VNPGRPLGERIVELT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT I + +NI FD + + D R Sbjct: 69 GITDGMLAGAPA----IGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREG 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ RA L IE V AH A+AD Sbjct: 125 -------IDTLNLCRAFMPGEHKKN-------------LSAACAFYCIEQVEAHRAEADA 164 Query: 182 YATLALVWLIREKKPKLFEYLY 203 + L + E + + E L+ Sbjct: 165 LSAHLLYQKLLEGRGEGREELF 186 >gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] Length = 475 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 68/226 (30%), Gaps = 30/226 (13%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F I D ET G + ++ + V V + E I Sbjct: 1 MKEVKFAIIDIETTGGGIKGNKITEI-CVLVVQNGEVINEYTSL---VNPGTEIPLYIET 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I + + +E + +I + CI +N+ FD + F Sbjct: 57 LTNINDKMLVDAPK-FSEIASKIQEITRD---CIFVAHNVNFDYNIIKAEF--------- 103 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 N + + L +R P S+ L +L + I H N H A Sbjct: 104 -ESLNLSFQRKRLCTVRLAKKLIPGLF----------SYSLGNLCTSINIPHDNKHRAYG 152 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 D AT+ L + P +E D+ N+ + Sbjct: 153 DCEATVTLFKRFIDLDPD-YEVFKDFLNQKTAASYLPPNFRKSDFE 197 >gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 729 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 27/189 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G + D Q R+ ++ E F +++ + G Sbjct: 538 SYTVFDTETTGLQPSQGDEIIQIGATRIVN--RRLLRHECFDQLIDPRRPLSQQSIEVHG 595 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + ++ + QF + ++ +N FD + + + Sbjct: 596 ITRELLVGQPTID----TVLPQFQTFCADTVLVGHNAAFDMRFLQLKEKQTG-------- 643 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R + S +L+ +A G+ H A D Sbjct: 644 ------------VRFDQPVLDTLLLSAVLHPNQNSHRLEAIAERLGVSVFGRHTALGDAM 691 Query: 183 ATLALVWLI 191 T + + Sbjct: 692 VTGEVFLKM 700 >gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 1442 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 49/387 (12%), Positives = 108/387 (27%), Gaps = 40/387 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI+D ET G D +F + + + ++I F KP + +T I Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFLVKPI--QQINENITNLTNI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E +I + F N ++ +N I FD + + + Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL----- 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L + RAI F S +L + +++ + AH A D Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEIAHRADYDA 561 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239 + +++ F +L+ ++ + + L Sbjct: 562 IVLADVFKVMKNNLFNDFGITNLNEINTKLQTVMLKNRSFGNWINLYIKNQVNVKDMYEL 621 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 ++ Y I + + + + L L++ D+ + ++ Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + + + + L+ L + Y Sbjct: 679 DFITLPSIGSQKH---LVYAKKITIENVQKAFKKLVYLALELNKIIIYSSSPYYFLKDDK 735 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382 +Y + P+ Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762 >gi|269838290|ref|YP_003320518.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269787553|gb|ACZ39696.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 335 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 52/186 (27%), Gaps = 23/186 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G A VD+ + +P + EA + GIT Sbjct: 25 VYLDTETTGLGPD-AEIVDIA--VVDQAGRVL---LNSLVQPRN--PIPAEATRVHGITN 76 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + E + + + T II + R + Sbjct: 77 KMVMNAPE-WPEVYQELARIIQDYPTLII-----------YNAAYDRRLISQTCRRYGIS 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R D M A+ + W +R L+ A+ G H A D A Sbjct: 125 VPRADWQCAMLNYAAYRGE---WNARYGNHRWHTLEKAAIETGAPMPPTHRALDDAQACR 181 Query: 186 ALVWLI 191 +V + Sbjct: 182 HVVLSM 187 >gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida U112] gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112] gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] Length = 230 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 62 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192 >gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 203 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 S L + R GA + KL L + AH A A Sbjct: 106 ERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + + Sbjct: 153 DAEMAANLTAYLTNELRQTH 172 >gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 203 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 S L + R GA + KL L + AH A A Sbjct: 106 ERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + + Sbjct: 153 DAEMAANLTAYLTNELRQTH 172 >gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] Length = 204 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 204 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 204 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] Length = 1436 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 77/249 (30%), Gaps = 22/249 (8%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + + + E + KP +P Sbjct: 2 YLIFDTETTGLPKKWNAPLSDAENWPRCIQIAWQIHDAKGDLVW-HENYLIKPDGYTIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I GI+ A G+ AE + H + + +N+ FD + R Sbjct: 61 -DSEKIHGISTALAEEQGIPLAEVLEKFHAALRTVD--FVVGHNVSFDRNIMGAEYLRAD 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 ++ + + + + P+ + A Sbjct: 118 LADVLEDKMVIDTCTEETAQLCQLTGGRGGKFKLPTLSELYH--------FLFQEGFEEA 169 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H+A ADV AT + K + + + ++ K L H + + + Sbjct: 170 HNATADVEATTRAFLELLRKDIIHPKVFENQALQTEVLKAQTPFKTIGLTHQNLKKASEK 229 Query: 235 SNTALIAPV 243 PV Sbjct: 230 LKKKEATPV 238 >gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] Length = 998 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 30/189 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ V+ D ET G D Q A R+ Q E +E F + +T Sbjct: 40 HNVVVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITF---VNPGKPIPEDVAHLTD 95 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + A+ ++ +F + +N FD ++ + + Y +W Sbjct: 96 IHDSDVADAPLP-ADALAKLVEFIGDAK---VVAHNAEFDRTFTTR--HPSGYPLLENTW 149 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D LD+ R S +L DL A G H A ADV Sbjct: 150 ------IDSLDLARIA-------------LPRMKSHRLLDLVRAFGAPLST-HRADADVE 189 Query: 183 ATLALVWLI 191 AT A+ ++ Sbjct: 190 ATCAIFRIL 198 >gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 204 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 59/195 (30%), Gaps = 30/195 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D+ET G + DR + V++ + ++S + + TGIT Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKL-VDGQVVDSFQRLM---NPGFRVSTFIEGYTGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E QF + N + +N FD + R Sbjct: 64 NNMLRTAP-SCDEVMTSFSQFIAGEN---LIAHNASFDKRFLDAELERVNCG-------- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 F+ + A S KL +L IE+ H A AD Sbjct: 112 ------------YSGEFACSLLVARRLIQDAPSHKLGELVRHRNIENDGVFHRALADAQV 159 Query: 184 TLALVWLIREKKPKL 198 T L L+ E+ + Sbjct: 160 TAKLWLLMVEELEQY 174 >gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] Length = 253 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 27/207 (13%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V V + + DPEAV + GIT Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEV-VNRRLTG--NNYHQYINPERDIDPEAVEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF---YRNFYDSYRWS 121 ++ + V A+ + ++ + +N FD + + F + Sbjct: 61 NERVADEPV-FADIADAFWEYIRGAE---LVIHNAAFDVGFIDHEFGLLHDKRGGPRLGP 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + S D L + R ++ + L L GI++ H A Sbjct: 117 VADYCSVLDTLAMARKLHPGQRN--------------NLDALCKRYGIDNGRRVLHGALL 162 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYR 206 D + + + L + R Sbjct: 163 DAEILSDVYLTMTGGQTALSLAGIEER 189 >gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 389 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 53/202 (26%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A V P P V I G+T Sbjct: 77 YAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTL---LDPGCDPGP--VHIHGLT 131 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q+ A + + + ++ +N FD R Sbjct: 132 RQRLAGSP-TFAAVADEVAGLLA---GRVLVAHNAAFDWRMLAGEAMRIG---------- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + S +L LA G+ AHDA+ D Sbjct: 178 ---------TTIPVEWRLCTLTLASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVL 228 Query: 185 LALVWLIREKKPKLFEYLYDYR 206 AL+ I ++ + L R Sbjct: 229 AALLPRILQRAADQYLELPLTR 250 >gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 239 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 57/193 (29%), Gaps = 18/193 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A +R+D EA I GI + Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGAV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A DG I + + T ++ N R+D R+ + Sbjct: 68 ARADGAPARGAVAEITEALAAELRVGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--LL 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G ++D + + S L L + AHDA++D A Sbjct: 125 GAEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYDVRLDTAHDARSDALAA 175 Query: 185 LALVWLIREKKPK 197 L + P Sbjct: 176 TLLARSLGAHHPS 188 >gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] Length = 1530 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 26/191 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D+ + AGV++ + +KI+ + + IT I Sbjct: 449 TYVVFDLETTGFSSTKDKIIEIAGVKI-KHGKKIQEFQAL---INPQEKLSQTIINITNI 504 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + + F + CI+ +N FD + + Sbjct: 505 TDDMLEGKNTID----QVLPDFLNFIENCILVAHNATFDITFLKEKIKELGI-------- 552 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D M F + +++ F L+ LA ++ H A +D Sbjct: 553 -AYKPQPVIDTMTLSQRFFSEFLKY---------FSLKRLATVFKVKMEEHHRALSDANT 602 Query: 184 TLALVWLIREK 194 T + + ++ Sbjct: 603 TAQVFIKMIDQ 613 >gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei subsp. sakei 23K] Length = 944 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + DR QF V + + I + + +T I Sbjct: 7 YAVVDLETTGTNIKDGDRIIQFGCALV-QNGKII---QTISQDVNPLRDVPTKIQHLTHI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E + + + + S + +NI FD + R Sbjct: 63 TADQLELAPIFE-DLAPTLVEILS---GTVFVAHNINFDLPFLNGELTRVGL------QP 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D +++ + I A S++LQDL IEH N H A +D Sbjct: 113 LDLAGIDTVELAQII-------------LPEAPSYRLQDLTQLLEIEHDNPHQADSDALV 159 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L + + L + Sbjct: 160 TAKLFLKLSARLQALPSVTLN 180 >gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] Length = 257 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 28/254 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D ET G +VA DR + A ++V +S + + P + I Sbjct: 6 LKRPLAVIDLETTGTNVATDRIIEIAIIKVFPD----KSVQTKVKRIHPGMPIPPASTAI 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + + + Q+ + + GYN+ RFD F R D Sbjct: 62 HGISDEDIKDCP-TFKQCANELRQYMENCD--LAGYNSNRFDIPLLVEEFLRAGLD---- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D D ++ + + +DL NAH A+AD Sbjct: 115 --------FDTKDRRFIDVQKIFHLMEKRTLSAAYKFYCDKDLT--------NAHSAEAD 158 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT ++ + +L + + +D + + MF + + Sbjct: 159 ALATYEILEAQLSRYEQLQAEVAPLAEFTKEDDYVDFARRMVVQNGVEMFNFGKYKGRAV 218 Query: 241 APVAW-HPRYKDSV 253 V P+Y D + Sbjct: 219 REVLKIEPQYYDWM 232 >gi|298209279|ref|YP_003717458.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus HTCC2559] gi|83849206|gb|EAP87075.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus HTCC2559] Length = 258 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 77/255 (30%), Gaps = 28/255 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +VA D+ + + ++V K E + E + Sbjct: 5 LTKPICFFDLETTGVNVAKDKIVEISILKVFPNGNK----ESKTWLVNPERPIPAETTAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT +K + E S I++ + G+N+ RFD R D Sbjct: 61 HGITDEKVANEP-TFKELSSSIYEMIK--GCDLGGFNSNRFDIPLLAEELLRADID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + ++K + +AH A AD Sbjct: 114 -----------FDMKNSSAVDVQTIFHKMEQRTLVAAYKF-----YCDKDLTDAHSAAAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH-VSGMFGASRSNTAL 239 AT ++ +K P L + ++ D + F + L Sbjct: 158 TEATYEVLKAQLDKYPDLQNDTKWLAEFSSRKRFADFAGFIAYNKDGAETFSFGKHKGKL 217 Query: 240 IAPVAWHPRYKDSVI 254 + V + I Sbjct: 218 VEDVLENEPGYFGWI 232 >gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens] Length = 248 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 57/199 (28%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + + V V F D L DPEA + Sbjct: 9 VVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRH--FHVYIQPDRLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A+ + +F I +N FD + F + D Sbjct: 66 HGISDEFLQDKPL-FADVADEFVEFIRGAELII---HNAPFDIGFIDYEFGKLDRDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 --ADFCKITDSLQLARGLFPG--------------KRNNLDALCDRYDIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + ++ + Sbjct: 166 LDAEILADVYLIMTGGQTS 184 >gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1430 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 26/194 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T V +D ET G + + D + A ++ IE+ F P V I Sbjct: 762 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRSITPRTVGIH 814 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113 IT V+ ++ I Q+ + ++G+N D+ R + Sbjct: 815 HITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 873 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALANG 168 + +G D L ++ A + ++ P D A+S +L L A Sbjct: 874 APEC----QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALN 929 Query: 169 I-EHVNAHDAKADV 181 + + H A D Sbjct: 930 VRPEGDLHRADTDT 943 >gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 226 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 26/197 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G D+ + A V++ + ++ I+ VF DPE++ GIT Sbjct: 44 FCVVDTETTGLDINTAKIINLAAVKI-KGFKIIDYYNVF---INPGKSIDPESIKWHGIT 99 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E +F +I ++I+FD F S + + Sbjct: 100 DEMVKDKP-FVVEVMPEFVKFIRKS---VIVGHHIKFDVDMISKELMETFGCSLKQKCLD 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + L L + H A D AT Sbjct: 156 TMFIY------------------TRGIAKKNDHVGLDFLLDLYKVRCNGRHTALGDAMAT 197 Query: 185 LALVWLIREKKPKLFEY 201 + + + F+ Sbjct: 198 AEVFNKMVMQISDRFKT 214 >gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 284 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ DR Q + ++V + E E F P E + Sbjct: 5 LTRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGK--EERENLFVYP--GKPIPDEVSEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 TGIT E E + R+++ F G+N+ FD F R D Sbjct: 61 TGITTDLVEDAPTFE-ELAPRLNEVFK--GCDFAGFNSNHFDIPMLAEEFLRAEIDF 114 >gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445] gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 332 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVW 189 LA++ Sbjct: 224 LLAVLK 229 >gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] Length = 1430 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 26/194 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T V +D ET G + + D + A ++ IE+ F P V I Sbjct: 762 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRSITPRTVGIH 814 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113 IT V+ ++ I Q+ + ++G+N D+ R + Sbjct: 815 HITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 873 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALANG 168 + +G D L ++ A + ++ P D A+S +L L A Sbjct: 874 APEC----QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALN 929 Query: 169 I-EHVNAHDAKADV 181 + + H A D Sbjct: 930 VRPEGDLHRADTDT 943 >gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 237 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 60/199 (30%), Gaps = 21/199 (10%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D+ET G DV DR Q A ++V A I GIT + Sbjct: 10 VLDFETTGTDVETDRAVQVALLKVGPTGV----LNQLCQIIDPGVDVPEAAARIHGITTE 65 Query: 67 KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +A R+G AE R+ Q + + N FD R+ + Sbjct: 66 RARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRH----------H 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G S + ++ + L LA + AHDA AD T Sbjct: 116 GRSLAEADMLVLDPMVIDREL-----DPRRPGKRTLTALATHYRVRQEGAHDALADCLTT 170 Query: 185 LALVWLIREKKPKLFEYLY 203 + W + P Sbjct: 171 ARIAWRLPRMHPDWAAMGL 189 >gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 658 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 71/241 (29%), Gaps = 47/241 (19%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A V V + P P V + G+T ++ Sbjct: 23 VDVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTL---LDPGCDPGP--VHVHGLTAER 77 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 E E ++RI Q ++ +N +FD + + F R Sbjct: 78 LHGAPAFE-EVAQRISQMLE---GRVLVAHNAQFDYDFLAHEFARAGV------------ 121 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 L V R + + + P D +L LA G+ + AHDA D + Sbjct: 122 ---SLPVARRLCTLALNRRVDPPTQD----LRLGTLAAHYGVPQLRAHDALDDTRVLAGV 174 Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247 + LR+ + P V A + + P A+ Sbjct: 175 LR-------------------ASLREAARLDLRLPFVACPPRQDARFTPSPPKTPCAYRN 215 Query: 248 R 248 Sbjct: 216 P 216 >gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1] gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1] Length = 286 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +I+D ET G D+ DR Q + ++V E+ E +F + E + + Sbjct: 5 LKKPLIIFDLETTGLDLVNDRIIQISYIKVLPNGEE-ERESIF---VNPEKPIPHEVIEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 TGIT + E + + F + I G+N+ FD F R D Sbjct: 61 TGITNEDVANAPK-FKEIAAHLQNQFKDSD--IAGFNSNHFDVPLLAEEFLRAGIDF 114 >gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] Length = 241 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 27/185 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + GV + ++ T + P EA + GI+ Sbjct: 4 IIFDTETTGLDSRDDRVIELGGVELVNRF-PTGRTFHHYINPQ-GRAIHAEAQAVHGISA 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 F+ + ++ + + + +N FD + F R + + Sbjct: 62 ADLAGKPT----FAEIVEEWLAFTDGAKLVAHNATFDIGFLNVEFGRLGHPVI-----DP 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 D L + R + P+ L L GI++ H A D Sbjct: 113 GLVVDTLALARRKHPMGPN--------------SLDALCRRYGIDNAKRTKHGALLDSEL 158 Query: 184 TLALV 188 + Sbjct: 159 LAEVY 163 >gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis NE061598] Length = 230 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 62 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192 >gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] Length = 930 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 31/188 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M FV D ET G D D + V+V ++ + + + + Sbjct: 1 MMFSFVALDLETTGLDCWSDDIIEIGMVKV-IDGQERDFFQSL---VRPGGPLPVKIKQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+ +I F + +NI+FD + Sbjct: 57 TGLKDDDFQSAPW-FQTIIPKILTFI---GDLPLVGHNIKFDRDFLAAAC---------- 102 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N +D L++ R A S +L +L G+E H A D Sbjct: 103 GHQLPNDLYDTLELARI-------------LQPSAPSHRLGELCKIAGVEVNVEHRALDD 149 Query: 181 VYATLALV 188 ++ L+ Sbjct: 150 ARSSARLM 157 >gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1] Length = 235 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 57/189 (30%), Gaps = 35/189 (18%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G D DR + V E ++ F + E V I Sbjct: 4 IIFDTETTGLDKDSDRIIEIGCV------EMVDRYLTKRQFHVYLNPQGVIIPDEVVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + E + + +F + + +N FD + R Sbjct: 58 GLTNERLKNEKKFE-DIADEFLEFI---DGATMVAHNASFDISFLNAELGRINKPLISVD 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + P+ L L GI++ N H A Sbjct: 114 N-----VIDTLAIARQKFPMGPN--------------SLDVLCKRFGIDNSNRVLHGALL 154 Query: 180 DVYATLALV 188 D + Sbjct: 155 DAEILADVY 163 >gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 246 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 N V+ D ET G + R + V + + F D P+ Sbjct: 10 NRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPD 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 AV + GIT + + E+ +F + +N FD + F N D Sbjct: 67 AVEVHGITDEFLVDKP----EYQDVHKEFLEFIKGAELVAHNAPFDTGFMDYEF--NMLD 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 121 PGIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCDRYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] Length = 170 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 32/197 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D ET G R + A V + + + E + P A Sbjct: 1 MESGLAVVDVETSGLSPRGGGRVIEVAAVLLRE-GKVVGELESL---LRVNCSIHPAAAR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI + E +F S + +N FD + R+ Sbjct: 57 VHGIGWEMLRHAPEPE----DVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLAN 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---HD 176 S + +R P+ S +L+ LA H Sbjct: 113 RS----------ICTLRMARRRFPELA----------SHRLEALARHLLGSIPEDCRLHR 152 Query: 177 AKADVYATLALVWLIRE 193 A D + + E Sbjct: 153 ALGDARLAARVWLAMNE 169 >gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 493 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 29/190 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D E G + DR + A +R D + +TGI Sbjct: 22 VIIDLEATGGNPYTDRITEIAFLRFDGNG-----VSSYRQLVNPQRNIPEFVSNLTGIDD 76 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + A+ S + ++ +N +FD + R+ F R Sbjct: 77 EMVADAP-PFADLSDDLLHRLR---GTLLLAHNSKFDYTFLRHEFSRCRLSYAA------ 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L ++ P + L + + I + H A DV A Sbjct: 127 ----PTLCTVQLSRRLYPQFFK----------HNLDSIIERHQIAVSSRHRAMNDVLALA 172 Query: 186 ALVWLIREKK 195 + L Sbjct: 173 DYLELTAASH 182 >gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] Length = 303 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 39/191 (20%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVF 59 V+ D ET G + A D + V + + S + PE+ Sbjct: 43 VVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLE---DPGMAIPPESTE 99 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + + +A + + ++ +N +FD + Sbjct: 100 VHGITDEMVQGKRIDDAAVAAFL------DGVSVVIAHNSKFDRVFLE------------ 141 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R + + + + + + +G S KL ++ G AH A+ Sbjct: 142 -------KRLSVFETLPWGCSLAQVDWR----AEGIGSAKLDYISYQYGF-FYEAHRAEG 189 Query: 180 DVYATLALVWL 190 D YA L ++ Sbjct: 190 DCYALLEILQQ 200 >gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] Length = 975 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 31/186 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + + A R+ R E +E + F L E +T IT Sbjct: 48 VVLDTETTGLSHRENELIEIAAARL-RGREVVERFDTF---IKPHALIPAEITELTSITN 103 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E E R+ F + +N FD + + Sbjct: 104 ADVAHAPSAE-EAVARLADFV---GGAPVIAHNAAFDRGFIEAVSGGAEVTDIW------ 153 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + R +S KL +A G +H A ADV A Sbjct: 154 ---IDSLALSRIA-------------LPRLSSHKLASMAELFGCS-GVSHRANADVEALC 196 Query: 186 ALVWLI 191 + ++ Sbjct: 197 GVWRIL 202 >gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] Length = 284 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 77/268 (28%), Gaps = 25/268 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ DR Q + ++V ++ +F + E V + Sbjct: 5 LTRPLIVFDLETTGLDLVNDRIIQLSYIKVLPDGTEL-RKNIF---INPERSIPKEVVEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR- 119 TGIT E + ++ F GYN+ FD F R D Sbjct: 61 TGITDDDVKEAP-TFKEMAPDLNNEFR--GCDFAGYNSNHFDIPMLAEEFLRAGIDFDFS 117 Query: 120 ---------WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD---LALAN 167 D + +D ++++ Sbjct: 118 KCRLIDAQTIFHKMERRHLAAAYKFYCGRKMEEDFTAHRADEDTEATYRVLQGELEMYQP 177 Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 G + + D+ + +KN K+I ++ P Sbjct: 178 GKQEEAERQLENDMDVLAEFSKNNNNVDFAGRIVWKELTDKNG--KVITDKDGKP--QQQ 233 Query: 228 GMFGASRSNTALIA-PVAWHPRYKDSVI 254 +F + ++ + P Y ++ Sbjct: 234 EVFNFGKYKGWAVSEVLHRDPGYYSWML 261 >gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] Length = 269 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G ++ DR + + V+ TE+ + + E+ I Sbjct: 6 LKKPIAFFDLETTGVNIVRDRIVEISVVKALVNG----ETEIRTRRINPEMPIPLESSLI 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GI + ++ + F + G+N+ RFD F R D Sbjct: 62 HGIYDEDVKDAP-TFKSVAKNLASFLE--GCDLAGFNSNRFDIPMLVEEFLRVGVDF 115 >gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC200] Length = 230 Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YKVEAGALAIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 62 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192 >gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 255 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 27/197 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + V + + + + EAV + GIT Sbjct: 4 IILDTETTGIDPREGHRLIEIGAVEM-VNRRLTG--NTYHQYINPERDIEAEAVEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF---YDSYRWS 121 +K + V AE + F + +N FD + + F R Sbjct: 61 NEKVADEPV-FAEVADAFWAFIKGAE---LVIHNAPFDVGFIDHEFARLNEARGGPVLGP 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + + L L I++ + H A Sbjct: 117 VAEHCRILDTLQLARDKHPGQRN--------------NLDALCKRYEIQNGHRVLHGALL 162 Query: 180 DVYATLALVWLIREKKP 196 D + + + Sbjct: 163 DAEILADVYLAMTGGQT 179 >gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 242 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++ D ET G + R + V V F DPEA+ Sbjct: 11 IVLDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRY--FHQYINPGQAIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ + + +++ +F + I +N FD + + F + S Sbjct: 68 VHGITDERVANEPRFH-QIAQQFIEFI---DGAEIVAHNANFDVSFMDHEF--SMLPSKG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + D L++ + ++ + L L GI++ H A Sbjct: 122 PKTMDICDILDTLEIAKFLHPGQKN--------------NLDALCKRYGIDNSRRHYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188 >gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG 3301] gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG 3301] Length = 353 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 55/195 (28%), Gaps = 32/195 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F + ITGI Sbjct: 95 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGI 154 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + I + II +N FD + Sbjct: 155 TDEMVRGQTIPREKLDALIAE------ADIIIAHNAGFDRPF------------------ 190 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + A ++ + G KL L +G H N H A+ D A Sbjct: 191 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 244 Query: 184 TLALVWLIREKKPKL 198 LA++ Sbjct: 245 LLAVLKEQSGDTTPF 259 >gi|289812334|ref|ZP_06542963.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 78 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 53/78 (67%), Positives = 62/78 (79%) Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 +F+CKPADDYLP P AV ITGITPQ+A G EA F+RRIH F+VP TC++GYNN+RF Sbjct: 1 MFYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRF 60 Query: 102 DDYYSRNIFYRNFYDSYR 119 DD +RNIFYRNFYD Y Sbjct: 61 DDEVTRNIFYRNFYDPYA 78 >gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] Length = 1512 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPRSWSAPITDTDNWPRCIQIAWQLHDEMGNLI-EHQDYLVKPEGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + AL G++ +E + + S T I N+ FD F+R Sbjct: 61 -DAERIHGISTELALEQGILLSEVLEKFNIALSK--TKFIVGQNVGFDVNIMGCEFHRL- 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 N S + V+ + + ++ P G FKL L Sbjct: 117 ---------NFGSDLSKMPVLDTCTEVTANLLKLPGGRGGR--FKLPTLTELHQYLFNQP 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FAEAHNATADVEATTRCF 183 >gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 234 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 56/218 (25%), Gaps = 27/218 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G A R + A V V + D D A + GIT Sbjct: 4 IFLDTETTGLYPAQGHRIIEIAAVEV-INRRITSQH--YHVYLNPDREIDAGAQEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ F I +N FD + R Sbjct: 61 LEFLQDKPR-FADVVGEFLDFVQDSELII---HNAPFDVGFLNAELGRIEKPGIESVASG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + + + + L L GI++ H A D Sbjct: 117 ---IIDTLKMAKEMRPGQRN--------------NLDALCRHFGIDNSKRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 + + + L + D N + IQ + Sbjct: 160 LLADVYLAMTRGQESLIIDMLDTPVHNDDNDALQIQAI 197 >gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] Length = 230 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 30/191 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +++D ET G D DR + + + ++ + VF C + EA Sbjct: 1 MMRE-IVFDTETTGLDPRSGDRLVEIGCI---EMFNRVPTGAVFHCYFNPERDMPAEAEA 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G++ AE + + F + + +N FD + N + Sbjct: 57 VHGLSIAFLSDKPK-FAEKADDLLAFIADS---PMVAHNAGFDFGFINNELELCGREPVS 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 + D + + R + + L L GI+ H H A Sbjct: 113 R-----DRMVDTVAIARRKHPGA--------------KLSLDALCSRYGIDRSHRTKHGA 153 Query: 178 KADVYATLALV 188 D L Sbjct: 154 LLDAELLAQLY 164 >gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 719 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 52/185 (28%), Gaps = 27/185 (14%) Query: 5 FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D A D Q R+ + S E F + + GI Sbjct: 529 YTVFDTETTGLDPAGGDEILQIGATRI-VNGRLLAS-ECFDQLVDPQRSIPEAGIAVHGI 586 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + H F +T ++G+N + + Sbjct: 587 RPEMVRGKP-TLPQVLPAFHAF--AADTVLVGHNVAFDMRFLTLKENASG---------- 633 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +R + G S L+ +A GI H A D A Sbjct: 634 -----------VRFDQPVLDTLLLAAIVHPGEDSHGLEAMAARLGIAVSGRHTALGDALA 682 Query: 184 TLALV 188 T + Sbjct: 683 TAEIF 687 >gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Mississippi] gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Puerto Rico] gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Virginia] gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] Length = 232 Score = 86.4 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 50/186 (26%), Gaps = 30/186 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D A DR + V + + + P D A I GIT Sbjct: 6 IVLDTETTGLDAASGDRIIEIGCVEL-VDFVMTGQVFHKYINPERDIPI--AATKIHGIT 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + F ++ +N FD + R Sbjct: 63 TDMVKNMPK-FAEMADQFLNFVQDS---VLVIHNAGFDLKFIETEMERIGKTKLYN---- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L+V R + P L L I + H A D Sbjct: 115 --PVVDTLEVARRKFPGMPA--------------SLDALCKRFDISTSSRRFHGALKDAT 158 Query: 183 ATLALV 188 + Sbjct: 159 LLARVY 164 >gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N] gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N] Length = 243 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 50/194 (25%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D A R + V + + D DPEA+ + G+T Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCVEL-VNRMVTGRNLHLY--LNPDRDSDPEALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + QF + +N FD + + Sbjct: 61 TAFLSDKPR-FGDIAEAFIQFIEGAE---LIAHNASFDVKFFNAELQKVGRK-------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + A D + L L GI H H A D Sbjct: 109 ---------TLDNYCASVTDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQ 159 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 160 LLAEVWLAMTRGQD 173 >gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755] gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755] Length = 256 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 27/220 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +++ DR + + ++V K E + K E I Sbjct: 5 LTRPICFFDLETTGINISKDRIVEISILKVFENNNK----ESYTWKVNPGIPIPKETTAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + + E + +I+ + GYN+ RFD R D Sbjct: 61 HGISDEDVVNEPK-FDELAPKINAMIK--GCDLGGYNSNRFDIPLLAEEMLRTGID---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + ++K + +AH A+AD Sbjct: 114 -----------FDLKKINAVDVQTIFHKKEKRTLEAAYKF-----YCDKDLTDAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 AT ++ ++ P L + +K D+ Sbjct: 158 TNATYEVLKSQLDRYPDLENDTKWLSTFSAHKKFADLAGF 197 >gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas asaccharolytica DSM 20707] gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas asaccharolytica DSM 20707] Length = 255 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D E G D+ DR + +++ E+I V + + E+ I GIT Sbjct: 9 LVVFDIEATGLDITNDRIIELTILKLMPDGERI----VRTRRFNPEMPIPAESTAIHGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ + + + GYN+ RFD F R + S + Sbjct: 65 DEDVRDCP-PFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQH 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+ + + EH+ AH A+AD AT Sbjct: 122 ----IDVQTIFH----------------KMEPRTLEGAVRFYCHREHIGAHGAEADTIAT 161 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 L ++ +K + + Sbjct: 162 LDVLLAQLDKYGDALPHSVKELS 184 >gi|332306913|ref|YP_004434764.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174242|gb|AEE23496.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 251 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + D V + Q + + + KP D ++V I GIT Sbjct: 60 LVALDFETTGLNPKTDSIVSIGLVAMTTQRIRCAQAQHWIIKP--DTELKSKSVVIHGIT 117 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F+R + + ++ ++ + + + + + Sbjct: 118 HSDVADAPT----FNRVLDELLEHLQGKVVVAHHKDIESRFLNSAMKQYIGEEIV----- 168 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + S +L D + + H+A D A Sbjct: 169 -FPCIDTMSLEARFSRTFKRTFLRSLLGQKTPSIRLTDCRSRYHLPYYRQHNALTDATAC 227 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 228 AELLQAQIATHYSD 241 >gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 68/240 (28%), Gaps = 34/240 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ L A+ + +F + +N FD + F + D + Sbjct: 66 HGISDDFLLDKP-TFADIADEFLEFIRGAE---LVIHNAPFDIGFMDYEFRKLNRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASR 234 D + + + L + K +++K++ +V S A Sbjct: 166 LDSQILADVYLTMTGGQTSLTFSMESEGEKPRPTGEVQKIVRKMQALKVVRASAEELAEH 225 >gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM 7489] gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM 7489] Length = 258 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 71/221 (32%), Gaps = 27/221 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +VA DR + + ++V K E + E V + Sbjct: 5 LTRPICFFDLETTGINVAKDRVVEISILKVYPNGNK----ESKTWLVNPEMHIPDEVVAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ +K + A+ S+ I+ + + GYN+ RFD R D Sbjct: 61 HGISNEKVANEP-TFAQLSKEIYAMIKDCD--LGGYNSDRFDIPLLAEEMLRAGVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ + + E NAH A AD Sbjct: 114 --------FDMKNTV--------SVDVQTIFFKMEKRTLEAAYKFYCNKELTNAHSAAAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 AT ++ ++ P+L + +K D Sbjct: 158 TNATFEVLKSQLDRYPELENDIKKLSEFTTRKKFADFAGFI 198 >gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191] gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191] Length = 201 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 29/189 (15%) Query: 4 HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F D ET G R + A + I + + E + I G Sbjct: 12 KFAFLDTETTGLSPYDGARLCEIAVI---TNGALIAK-SEYGTIINPRCVISQEVINIHG 67 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + A + E + + + + +I +N FD + F R Sbjct: 68 ITNEMAAQAPYFE-DIAPLLIGLLTDS---VIVCHNADFDIPFLAAEFARCG-------- 115 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R D +++ ++ L + G+ + H A AD Sbjct: 116 ------------LRMPQTVILDTLKFARKNGNFKKNNLGFIVSELGLSNEGWHRAMADAK 163 Query: 183 ATLALVWLI 191 T + + Sbjct: 164 MTEKVFYHF 172 >gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289] gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289] Length = 284 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 7/159 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T V++D ET G D+ DR Q + ++V ++ E +F + E + Sbjct: 5 LTKPLVVFDLETTGLDLVNDRIIQISFIKVLPDGKE-ERENIF---INPEKPIPTEVTQL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + ++ + F+ G+N+ RFD F R D Sbjct: 61 TGISHKDVADAP-TFRQKAKELADRFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +++ + R A + ++ + K Sbjct: 118 KSRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFEAHK 156 >gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I] gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I] Length = 255 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D E G D+ DR + +++ E+I V + + E+ I GIT Sbjct: 9 LVVFDIEATGLDITNDRIIELTILKLMPDGERI----VRTRRFNPEMPIPAESTAIHGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ + + + GYN+ RFD F R + S + Sbjct: 65 DEDVRDCP-PFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQH 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+ + + EH+ AH A+AD AT Sbjct: 122 ----IDVQTIFH----------------KMEPRTLEGAVRFYCHREHIGAHGAEADTIAT 161 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 L ++ EK + + Sbjct: 162 LDVLLAQLEKYGDALPHSVKELS 184 >gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 241 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 57/190 (30%), Gaps = 18/190 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V + P A + G+T + Sbjct: 12 FDTETTGVDVEQDRIVSAALVVQECAG---GRVRSTRWLVNPGVPVPPGATEVHGLTDEH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+G A I + ++ N FD R+ + DN Sbjct: 69 LQRNGRWPAPVVEEIARALGEQRMAGRPVVVMNAP-FDLTLLDRELRRHRASTLARYLDN 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + P + L DL GIE AHDA AD A Sbjct: 128 -----------RPLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGIELEGAHDASADAQAA 176 Query: 185 LALVWLIREK 194 L +V + + Sbjct: 177 LEVVRAVGRR 186 >gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aceris str. M302273PT] Length = 203 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 S L + R GA + KL L + AH A A Sbjct: 106 QRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + + Sbjct: 153 DAEMAANLTAHLTNELRQTH 172 >gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 241 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 +++D ET G + R + V + + F D DPEA Sbjct: 6 ERIIVFDTETTGMNMSGPHYEGHRIIEIGAVEI-INRKLTG--NTFHVYIKPDRAIDPEA 62 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + + AE + F + +N FD + F + Sbjct: 63 IEVHGITDEFLVGKP-TYAEIHQEFMDFIQGAE---LVAHNAPFDIGFMDYEFRKLGLKD 118 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175 + D LD+ + ++ L L GI+ H H Sbjct: 119 LKTDEM--CKVTDTLDMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162 Query: 176 DAKADVYATLALVWLIREKKPK 197 A D + ++ + Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184 >gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] Length = 231 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 14/111 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---IT 61 F + D ET G + DR + A VR D + ++S PD +A+ I Sbjct: 31 FAVIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLS-------PDGKAIKNSHIH 83 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 GIT FS F S + + +N FD R Sbjct: 84 GITNDMVATAPT----FSDVYGDFTSYIDGMQLLAHNAPFDSKMIIAEVDR 130 >gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642] gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM 10642] Length = 200 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 28/219 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G +V D A + +D + + + + ++V G Sbjct: 4 EKFAVVDVETTGLNVKKDEIISIAIIPMD-GLKIL--FSEAYYRILKPRRFKIDSVKYHG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP+ E I + + II +I D + + F Sbjct: 61 ITPRMVEEAP-TFCEVKEEILEKLNER---IIVGYSINLDIEFLKKSFKEC-------EV 109 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ DV + + D ++ L+DLA G++ H A +D Y Sbjct: 110 VFECKYVDIADVEKLVGRLFGDYMK---------DVTLEDLAKKYGVDVAYRHSALSDAY 160 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 T + + + K Y R + + I ++ Sbjct: 161 ITAQIFQMQLLRLLK-----YGLRKFEDVLRAIKKEDFY 194 >gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] Length = 1567 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 25/200 (12%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A DR +E+ + + KP +P Sbjct: 18 YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQD-YIIKPDGYDIPF 76 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A I GI+ + A +G E + ++ +NI FD + ++R Sbjct: 77 -NASRIHGISTKMAHAEGRDLREVLIEFGEVLKKAE--VVAGHNIDFDYKIAGAEYHRQS 133 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVN 173 D+ D +++ ++ S KL++L Sbjct: 134 LDNILEK----IPSADTMELGTDYCKLGG------GKNGRYKSPKLEELYTTLFNERFDE 183 Query: 174 AHDAKADVYATLALVWLIRE 193 AH+A ADV AT + + + Sbjct: 184 AHNAAADVNATAQIFFEMMR 203 >gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379] gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 641 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 28/182 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A + + E+ P P V + G+T ++ Sbjct: 23 VDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTL---LDPGCDPGP--VEVHGLTAER 77 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + RI ++ +N +FD + + F R W + Sbjct: 78 LRGAP-TFDQVAGRIGAMLQDR---VLVAHNAQFDYDFLAHEFAR------ARMWLPVSQ 127 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + D KL LA + AHDA D + Sbjct: 128 RLCTLALNRQV-------------DPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGI 174 Query: 188 VW 189 + Sbjct: 175 LR 176 >gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + GV ++ ++ + F + + A+ + G+T Sbjct: 4 IVLDTETTGLNPRTGDRILEIGGVELN---NRMLTGNNFHQYINPERDSEEGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F + I +N FD + F R Sbjct: 61 TEFLSDKPK-FAEIAEEFRAFIAGAELII---HNAPFDIGFLNAEFKRLNLPPVHEQV-- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + ++ L L G+ H H A D Sbjct: 115 -HGVIDTLVQAKEMHPG--------------KRNSLDALCDRYGVSNAHRKLHGALLDSE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLADVYLAMTRGQNS 174 >gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] Length = 966 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 30/189 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ V+ D ET G D Q A R+ Q E +E F + +T Sbjct: 8 HNVVVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITF---VNPGKPIPEDVAHLTD 63 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + + A+ ++ +F + +N FD ++ + + Y +W Sbjct: 64 IHDRDVADAPLP-ADALAKLVEFIGDAK---VVAHNAEFDRTFTTR--HPSGYPLLENTW 117 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D LD+ R S +L DL A G H A ADV Sbjct: 118 ------IDSLDLARIA-------------LPRMKSHRLLDLVRAFGAPLST-HRADADVE 157 Query: 183 ATLALVWLI 191 AT A+ ++ Sbjct: 158 ATCAIFRIL 166 >gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC 49188] gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi ATCC 49188] Length = 332 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 66/241 (27%), Gaps = 37/241 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F + ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPADITRITGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + I + II +N FD + Sbjct: 134 TDDMVKGQTIPREKLDALIAE------ADIIIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + A ++ + G KL L +G H N H A+ D A Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223 Query: 184 TLALVWLIREKKPKLFEYLY-DYRNKNQLRKLIDIQNMTPLVHVSGMFGA----SRSNTA 238 LA++ E L R + ++ M + G + R + Sbjct: 224 LLAVLKEQSGDTTPFAELLKASQRARMRVYAENSPFEMKDHLKTRGYRWSDGTDGRPKSW 283 Query: 239 L 239 Sbjct: 284 W 284 >gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482] gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482] Length = 277 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 79/256 (30%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + ++V + E + + + + Sbjct: 23 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEASSAV 78 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E ++ + + + G+N+ RFD F R Sbjct: 79 HGIYDADVADCP-TFKEVAKNVARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 129 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ F + + + S + +AH A+AD Sbjct: 130 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCEK---SLEDAHTAEAD 175 Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 AT ++ ++ P + + + + + M + +F + Sbjct: 176 TRATYEVLKAQLDRYPDLQNDIAFLAEYSSFTKNVDFAGRMVYDDNGVEVFNFGKYKGMS 235 Query: 240 IAPVA-WHPRYKDSVI 254 +A V P Y ++ Sbjct: 236 VAEVLKKDPGYYSWIL 251 >gi|257065507|ref|YP_003145179.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia heliotrinireducens DSM 20476] gi|256793160|gb|ACV23830.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia heliotrinireducens DSM 20476] Length = 986 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 30/202 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + V+ D ET G D Q A R+ E + F E V +T I Sbjct: 5 NLVVLDTETTGLSYNHDELTQIAAARM-ECGEITDWFVTF---VNPGKPIPDEIVRLTNI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + E + +F + +N FD ++ + W Sbjct: 61 HDEDVVDAPTPD-EARALLAEFI---GDAYVVAHNADFDKHFCTKSESGECLNRNIW--- 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R S +L DL A H A ADV A Sbjct: 114 -----VDSLALARIA-------------LPRMKSHRLIDLVHAFDAPIST-HRADADVEA 154 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 A+ ++ + L +Y Sbjct: 155 LCAVYRILLSAVATMPPDLVEY 176 >gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] Length = 940 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 68/194 (35%), Gaps = 28/194 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + + D ET G +V DR QF V ++ + + + + Sbjct: 7 KDTYAVVDIETTGGNVTSGDRMIQFGCVLIEDD-KIVHRFATT---VNPLTSIPKQIEHL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG++ + E + + I+ CII +NI+FD + R + Sbjct: 63 TGLSNKSVALAPYFE-DVAATIYNLLED---CIIVAHNIQFDYIFLSGELQRCGMPAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + +S++L DL IEH N H A +D Sbjct: 117 ----KNKGIDTVELAQI-------------LLPTESSYRLNDLVSKFNIEHTNPHQADSD 159 Query: 181 VYATLALVWLIREK 194 T L ++ K Sbjct: 160 AAVTAELFLELKNK 173 >gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] Length = 924 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 27/200 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D +DR QF V + E + + + + +TGI+ Sbjct: 7 YAVVDLETTGVDPTVDRIIQFGCVLI-ENGEIV---SHIGTDVNPNRIIPKQIQHLTGIS 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + I + I +N+ FD + + R Sbjct: 63 NARVQKAPYFE-DIAIMIFNLLTD---TIFVAHNVHFDYRFLSHELVRCGLPPLT----- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D + F SF+L DL+ + G+ H + H A +D T Sbjct: 114 ----IDAIDTVELAQIFL----------PTERSFRLSDLSSSLGLLHNHPHQADSDAQVT 159 Query: 185 LALVWLIREKKPKLFEYLYD 204 L+ +I +K L + Sbjct: 160 AELLLIIEQKMYTLPLITME 179 >gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 19/190 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D + A +RV + + E V +P DPEA+ + Sbjct: 1 MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + V + + ++ +N+ FD + + + Sbjct: 61 GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRP---- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N LD + G S L + G+ H A DV Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161 Query: 182 YATLALVWLI 191 A L + + Sbjct: 162 RACLGVARRL 171 >gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] Length = 257 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 73/255 (28%), Gaps = 28/255 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +VA DR + + ++V + E + PE + Sbjct: 5 LTRPICFFDLETTGINVAKDRIVEISVLKVLPNGK--EEKHTWLV--NPTIPIPPETTAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E + IH + + G+N+ RFD R D Sbjct: 61 HGIKDEDVADKP-TFKELANEIHNLIKDSD--LAGFNSNRFDIPLLAEEMLRAEVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + ++K +AH A+AD Sbjct: 114 -----------FDMKNRNAIDVQTIFHKMEQRTLSAAYKF-----YCDQTLEDAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239 AT ++ ++ L + + +K D F + Sbjct: 158 TIATYEVLKSQLDRYEDLENNMKSLAEFSARKKFADFAGFIAFNKDGEEVFSFGKHKGKK 217 Query: 240 IAPVAWHPRYKDSVI 254 + V + I Sbjct: 218 VEDVLENEPGYFGWI 232 >gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] Length = 245 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 33/202 (16%) Query: 1 MTNHFVIYDYETFGRDVAL----DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDP 55 M +I D ET G + + DR +FAG+ V+RQ+ + + Sbjct: 1 MNQRQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQF----TQNDLHLYIHPERDIPA 56 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 EA + GIT V A+ +++I F I +N +FD + F R Sbjct: 57 EATAVHGITLDDLADKPV-FADVAQQIFDFLKGAELII---HNAKFDVGFLNAEFARVGL 112 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + D+ + D L++ R Y + L L G++ Sbjct: 113 PNI----DSVCTVVDTLEMARKRYPGQKN--------------SLDALCTRLGVDRSRRV 154 Query: 175 -HDAKADVYATLALVWLIREKK 195 H A D + + + Sbjct: 155 LHGALIDCELLGGVYLAMTRGQ 176 >gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno] gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno] Length = 258 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 29/257 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D ET G D+ DR + + ++V K E A + Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPKAASDV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT ++ + E +++IH + + GYN+ RFD R D Sbjct: 61 HGITDERVACEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVDFDL- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + G + ++AH A AD Sbjct: 117 ---GNRVSVDVQTIFHKMEQRTLS----------------AAYKFYCGKDLIDAHTASAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239 AT ++ ++ L + +++ D +F + Sbjct: 158 TNATYEILKAQLDRYDSLENNIKKLSEFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKR 217 Query: 240 IAPVA-WHPRYKDSVIG 255 + + P Y ++G Sbjct: 218 VEDIFDEEPGYFGWLLG 234 >gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 300 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 56/198 (28%), Gaps = 28/198 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET G +D+ + A ++ D VF + + ITGIT Sbjct: 19 FIALDAETTGLSADVDKIIEIAAIKFDLLSN---DHPVFEALINPNVKVSRKITSITGIT 75 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ + QF I N +FD + F Sbjct: 76 NAMLADQ-ETFTDIAQDLKQFI---GDLPIVAYNAKFDKGFLDTEFANVGI--------- 122 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + ++KL +A I AH AKAD A Sbjct: 123 ------------ILNNHYHCALNLAKAAFNLPNYKLATVAEHCSIPLNEAHRAKADAVAA 170 Query: 185 LALVWLIREKKPKLFEYL 202 + + E + Sbjct: 171 GRVFMCAAVTLGHINEII 188 >gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7] Length = 203 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 S L + R GA + KL L + AH A A Sbjct: 106 QRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + + Sbjct: 153 DAEMAANLTAYLTNELRQTH 172 >gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 466 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 28/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G A + A + + E I+ + + +TGIT Sbjct: 11 YAIVDIETNGSAAAHGGITEIAIFLHNGK-EIIDEYQTL---VNPEKPIPFHIQTLTGIT 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E ++ ++ + I +N+ FD + F D Sbjct: 67 PEMLVDAPR-FDEVAKDVYSYLEK---AIFVAHNVSFDFSFLHKQFLDVGIDWKPIK--- 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G TS+ L L I + H A D AT Sbjct: 120 -------LCTVRLARKIF----------PGYTSYSLGSLCKNLNIPLHDRHRAAGDAKAT 162 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 L + + + + N Sbjct: 163 TILFEQLLQNDQERWIEKMSKTNAK 187 >gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] Length = 207 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ D+ET G + DR + V++ E +++ + + T Sbjct: 7 DSVIVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSGFIESYT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + +E F + +N FD + D Sbjct: 63 GISNRMLSTA-ASCSEVMDEFANFIQ---GSQLVAHNASFDKRFLDAELDFIGRD----- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 F+ + A + KL DL N H A AD Sbjct: 114 ---------------YTGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDGTFHRALAD 158 Query: 181 VYATLALVWLIREKKPKLF 199 T L L+ ++ Sbjct: 159 SEMTARLWLLMIDELQSDH 177 >gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 236 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 17/196 (8%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N + +D ET G D+ + A + +D+ + E F K + +T Sbjct: 10 NQIIFFDTETTGFHPERLDQIIELAAISIDKTGRQQE--MDEFIKLFRVQELPQQITELT 67 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ G E + ++ +N +FD + +RN Sbjct: 68 GISSDTLSAQGKDEFAVLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHRN----KNKE 123 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + D LD + D Q+P R + A + + N+H A D Sbjct: 124 WMQVFNDCDYLDTL----TVYKDRRQYPHRLESAI------VQYHLINKVKNSHRAIDDC 173 Query: 182 YATLALVWLIREKKPK 197 A + + + E++ Sbjct: 174 RALIEVTRCMYEERED 189 >gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] Length = 247 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 31/189 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFIT 61 F I D ET G + + +P + + + + ES F FC +T Sbjct: 69 ERFCIVDIETNGHNPFVHQPIEIGAIVY-QGGKICESFHSFVFC-----EEIPEYITKLT 122 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + + F + C+ +N+ FD + N Y + Sbjct: 123 GITSPMLEKAPKIH----QVLESFKLFLSDCVFVAHNVNFDYQFLSNALYHYGFGYLYNP 178 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 I+ + + + L+ L GI H H A D Sbjct: 179 --------------------RLCTIKLAQKTFTSPRYSLEFLNEFLGIRHSPLHRALEDS 218 Query: 182 YATLALVWL 190 + Sbjct: 219 KVASEVFKK 227 >gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 254 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 52/175 (29%), Gaps = 16/175 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V V R E + E +AV + GIT + Sbjct: 11 FDLETTGTDPGEARIVTAAVVEV-RGGEPVGRREWLA---DPGVTIPDDAVAVHGITTEW 66 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E + I + N FD R+ S G Sbjct: 67 AAAEGRPSREVADEIADVLVAHWQAGAPVVAYNAAFDLSLLAAELRRHGLPSLG-ERLGG 125 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++D A L+ + G+ H AHDA AD Sbjct: 126 AETGPVVDPYTIDRAV---------DRYRKGKRTLEAVCGEYGVVHERAHDAGAD 171 >gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] Length = 801 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D ET G+ VA R Q + +Q + ++ E F L +T Sbjct: 5 ETFVVVDLETTGQSVAKGGRIIQIGMTFI-KQRKIVDHFESF---VNPGQLIARNIQQLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ ++ E E + + +I +NI FD Y + F R + Sbjct: 61 HISQKEVKNAPYFE-EIAPLLQNLLKD---AVIIAHNINFDYPYLNDEFVRTGF------ 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ D + + + A ++L DL I NAH A AD Sbjct: 111 QKLNSAAIDTVQLAQI-------------LLPTAPGYRLLDLTTYLDITLNNAHRANADA 157 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 +AT L + ++ +L + Sbjct: 158 HATALLFLKLWQRAEQLPRVVLQ 180 >gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205] gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205] Length = 287 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 7/138 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ DR Q + ++V + + ++ E V + Sbjct: 5 LTKPLIVFDLETTGLDMIKDRIIQISYIKVMPDGTE-DRKNLY---VNPCMEIPAEVVAL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + + + + F+ GYN+ FD F R D Sbjct: 61 TGISNEDVKDAP-TFKQLAATLEKEFT--GCDFAGYNSNHFDVPMLAEEFLRAGIDFDFN 117 Query: 121 SWDNGNSRWDLLDVMRAI 138 +++ + + R Sbjct: 118 KCRLIDAQTIFMKMERRN 135 >gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] Length = 745 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 28/189 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G +R + V+V + + I++ +TGI+ Sbjct: 579 YSVVDIETTGGLKGGNRVTEIGIVKV-QHGKVIDTWTTL---INPQRHIPSFITKLTGIS 634 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V A+ ++ + + I +N+ FD + + + Sbjct: 635 DGMVYNAPV-FADIAQPLLDKLA---GSIFVAHNVNFDYGFIKKECEVAGH--------- 681 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + G S+ L +L+ + + H A AD AT Sbjct: 682 -FFKMPKMCTVVESR----------RAFKGLKSYSLGNLSAHFNLNLTSHHRALADATAT 730 Query: 185 LALVWLIRE 193 L+ LI+ Sbjct: 731 AELLLLIQN 739 >gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 481 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 43/180 (23%), Gaps = 28/180 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR + V + + + C +TGIT + Sbjct: 24 LDIETTGSHTERDRITEIGIVTLHPDG----TQSNWSCLIHPGCAIPARITTLTGITNEM 79 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 V F+ R I+ +N RFD + + F R Sbjct: 80 VADQPV----FAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREG------------- 122 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 +R + L + G+ H A D Sbjct: 123 -------IRFNPSVLCSVKLSRQMFPAERRHNLDSVMQRMGLSCAARHRALGDAAVVADF 175 >gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] Length = 237 Score = 86.0 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 27/193 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G R + V + + + DPEA+ + GIT Sbjct: 4 VVLDTETTGIG-DGHRIIEIGCVEL-VGRKLTGRHYHQY--INPQREVDPEAMEVHGITD 59 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + V F++ ++F N + +N FD + F + Sbjct: 60 EFLADKPV----FAQVANEFLDFINGAELVIHNAPFDVGFMDMEFAKLSNFPKTAEV--- 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183 D L + R +Y + L L GI+ H H A D Sbjct: 113 CGVLDTLTLARKMYPGQRN--------------SLDALCRRLGIDNSHRELHGALLDSEI 158 Query: 184 TLALVWLIREKKP 196 + L+ + Sbjct: 159 LADVYLLMTGGQT 171 >gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1] gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1] Length = 237 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 54/198 (27%), Gaps = 33/198 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G D R + V E I F D + EA + Sbjct: 4 VVLDTETTGIDPKQGHRIIEIGCV------EMIGRKLTNRHFHVYINPDREVEEEAFRVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + E ++ F I +N FD + + F R Sbjct: 58 GISNEFLADKPRFH-EIAQEFFDFIKGAELII---HNAPFDIGFMDHEFARIGGYPKTAE 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 +D L R + + L L GI+ H H A Sbjct: 114 V---CGVFDSLVYARKKHPGQKN--------------NLDILCRRYGIDNSHRELHGALL 156 Query: 180 DVYATLALVWLIREKKPK 197 D + L+ + Sbjct: 157 DSEILADVYLLMTGGQTS 174 >gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri] gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri] Length = 1259 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 35/205 (17%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G R + A D + P +P P +T Sbjct: 193 PSIIVFDLETTGLSKEKSRIIELAAQSLTDPS----AAFSTL-VNPGRFNIP-PAIKALT 246 Query: 62 GITPQKALRDGVVEAEFSRRIHQFF------SVPNTCI--IGYNNIRFDDYYSRNIFYRN 113 GIT V + + F S P + + +N +FD + + + R Sbjct: 247 GITNSMVSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRL 306 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV- 172 + D L + R + R DG F + L IE Sbjct: 307 G-----RELPSSWRFCDTLPLARQL-----------LRPDGLGKFSMDVLRGHYDIELEG 350 Query: 173 ---NAHDAKADVYATLALVWLIREK 194 H A D ++ + E Sbjct: 351 GDVQMHRAGTDARVLADILNKMLEH 375 >gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 19/190 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D + A +RV Q E V +P DPEA+ + Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + V + + ++ +N+ FD + + Sbjct: 61 GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEVAWDCVG----HRP 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D + + S L + G+ H A DV Sbjct: 113 ETLDHHALDTAALAFPL-----------LMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161 Query: 182 YATLALVWLI 191 A L + + Sbjct: 162 RACLGVARRL 171 >gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium rectale M104/1] Length = 345 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 19/200 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+YD ET G R F+ +R ++ + + Sbjct: 15 KKIVVYDLETTGFKSKNTRILSFSAIRYQVSEHGMDEIDRRNMFLNPMMTIPAYITAVNH 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +K E E I + + + + GYNN FDD + R + + Sbjct: 75 ITNEKVADCP-TEYEAGAEILSYLNSAD-FVSGYNNANFDDGLVNEMARRIGFGKWIPKN 132 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADV 181 + + +FKL LA + H++ DV Sbjct: 133 EIDVMI----------------LAKAVLTKQDVPNFKLGTLAEYFHADAGLEFHNSIDDV 176 Query: 182 YATLALVWLIREKKPKLFEY 201 AT ++W + K Sbjct: 177 IATSRVLWGLVNKCRTDEHD 196 >gi|332521177|ref|ZP_08397635.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] gi|332043270|gb|EGI79467.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] Length = 257 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 31/257 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G +++ DR + + ++V K E + E I Sbjct: 5 LKKPICFFDLETTGINISKDRVVEISILKVFPNGNK----ESKTWLVNPEMPIPAEVSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT ++ + AE ++ I+ + + G+N+ RFD R D Sbjct: 61 HGITDERVANEP-TFAELAKEINVMIKDSD--LAGFNSNRFDIPLLAEEMLRANMDFD-- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D+ + + + S + N NAH A+AD Sbjct: 116 --MNKRVAIDVQTI-------------FHKMEQRTLSAAYKFYCDKN---LENAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFE---YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 AT ++ ++ L +L ++ + + N FG + Sbjct: 158 TLATYEVLKAQLDRYEDLENDAKFLAEFSSHKKFADFAGFINYNKEGEECFSFGKHKGKK 217 Query: 238 ALIAPVAWHPRYKDSVI 254 L + P Y ++ Sbjct: 218 VLDV-LDKEPGYFGWLL 233 >gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 470 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] Length = 267 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 29/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F I D ET G + + P + ++V R + ++ E F IT Sbjct: 68 QETFCIVDIETNGHNPCVHTPIEIGTLKV-RNGKVVDCFESFVFN----AEIPEYITKIT 122 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI Q + + +F I +N+ FD + + + Sbjct: 123 GINAQMLENAPK----LASVLEKFKLFLGDSIFVAHNVDFDYNFLSQSLEKCGFGYLYNP 178 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 I+ R A + L L GI H N H A D Sbjct: 179 --------------------RLCTIKLAQRVLQAPRYSLGFLNEFLGINHQNLHRALQDS 218 Query: 182 YATLALVWLIREKKPKL 198 L + + +K PK Sbjct: 219 KTALEIFKICLKKIPKN 235 >gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 337 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 27/210 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G A DR + D + + + + +P+P + GI Sbjct: 132 TVIVFDTETTGLSRANDRIIEIGLQ--DLGGGENSTFQTLVN--PERIVPNP---HVHGI 184 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 T R V + + Q+ P I + +N FD + N F R Sbjct: 185 TTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCN--- 241 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 D L + R + + D LQ L I AH Sbjct: 242 --TEVPPNWRFLDTLPLARELIK--------SAGSDLPPGASLQALREYYRIPLVGPAHR 291 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206 +DVY ++ ++ L D Sbjct: 292 VLSDVYTLSQVLQMLTFNLKVSVANLLDRS 321 >gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] Length = 244 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 26/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G +V+ R + V +D + + P + D A+ + GIT Sbjct: 4 IVLDTETTGLEVSQGHRIIEIGCVELD-TRRLTGNHYHQYINPNRE--IDQGAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R +F + +N FD + + R D+ R + Sbjct: 61 NEFLKDKPSFE----RVFREFLEFVEGSELVIHNAPFDLGFLNSEIQRLEPDAPRLE--D 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + L L G+++ H A D Sbjct: 115 RCKIVDTLVMARGKHPGQRN--------------SLDALCQRYGVDNSQRDLHGALLDSE 160 Query: 183 ATLALVWLIREKKP 196 + L+ + Sbjct: 161 ILADVYLLMTGGQT 174 >gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 203 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 + +F+ + GA + KL L + AH A A Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + Sbjct: 153 DAEMAANLTAYLTNELRNTH 172 >gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 203 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 + +F+ + GA + KL L + AH A A Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + Sbjct: 153 DAEMAANLTAYLTNELRNTH 172 >gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis TAC125] gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 730 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 28/192 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G ++ + V+V + + I++ +TGI+ Sbjct: 567 YSVVDLETTGALKGGNKITEIGLVKV-QHGKVIDTWTTL---VNPQRHIPGFITSLTGIS 622 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+ + + I +N+ FD + + Sbjct: 623 DSMVSNAPV----FADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVP-------- 670 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + L + S+ L +L+ + + H A AD AT Sbjct: 671 --FKMPKLCTVVESRKAFAGL----------KSYSLGNLSKHFNLNLTSHHRALADATAT 718 Query: 185 LALVWLIREKKP 196 L+ LI++ + Sbjct: 719 AQLLLLIQKSQS 730 >gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448] gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448] Length = 1469 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 57/482 (11%), Positives = 129/482 (26%), Gaps = 51/482 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI+D ET G + +F V + + +IE + F P ITGI Sbjct: 410 KFVIFDLETTGLSAFYNEIIEFGAVVL-QNGIEIEKHQFF---IKPTGKIPPAITKITGI 465 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +I + ++ +N FD + + + Sbjct: 466 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L+V R + S L+++A IE+ AH A D Sbjct: 517 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDA 563 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + + KN + +L + + + Sbjct: 564 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIIAKNQIGIKKLYK 623 Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + +A +I + + + T V Sbjct: 624 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 683 Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P + + + ++ K + L+ + K Sbjct: 684 EIPPPIAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 743 Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403 + ++ + D + + + + E+L D+ +L Sbjct: 744 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 800 Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 +N ++ ++ K L + + KL+ + ++ L + Sbjct: 801 VVKN--SNFVADLIENNIQIIKSGLYPPSFDSSEVKLKEFVYKKAYEKYGRFLPKLIENR 858 Query: 464 LQ 465 ++ Sbjct: 859 IK 860 >gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523] Length = 230 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V +T F+C P Y + A+ I G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRVTGNTLHFYCNPN--YEVEAGALAIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 62 NEFLADKPLFE----DKVDEMIDFLKGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D L++ R + + L L +H H A D Sbjct: 118 VAKIVDSLELARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTISKNSI 192 >gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] Length = 174 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 29/193 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G R + A R D ++ + P +TGI Sbjct: 2 YAIVDIETTGGG-GTSRITEIAVFRHDGA-RIVDFFHSL---INPEIYIPPFITRLTGID 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +N +FD + + F + Sbjct: 57 NEMVKDAP-TFYEVQDAVRAMTRD---AWFVAHNAKFDYGFIKREFGAL----------D 102 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + DLL ++ G S+ L +L + I N H A D AT Sbjct: 103 EYFQRDLLCTVQLSRKIF----------PGLKSYSLGNLCESLEIMIENRHRAHGDAEAT 152 Query: 185 LALVWLIREKKPK 197 + L + + Sbjct: 153 VRLFEKLLLHDRQ 165 >gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1] gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1] Length = 237 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 51/190 (26%), Gaps = 29/190 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G D R + V + + + + +A + Sbjct: 1 MERLIVLDTETTGFDPKEGHRIIEIGCV----ELVNMRKGDERQWYVNPEREIPADATKV 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT F H+F + + +N FD + R + Sbjct: 57 HGITDADVANSPK----FKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRL----NKR 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D + + R + ++ L L G+++ H A Sbjct: 109 LVMPMERAIDTIPLARRKFPG--------------STVNLDALCKRLGVDNSGRTFHGAL 154 Query: 179 ADVYATLALV 188 D + + Sbjct: 155 LDAHLLAEVY 164 >gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602] gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602] Length = 245 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 61/213 (28%), Gaps = 30/213 (14%) Query: 2 TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 +N V+ D ET G + R + V V F D L DPE Sbjct: 7 SNRIVVLDTETTGMNKLGVHYEGHRIIEIGAVEV-VNRRLTGR--NFHVYLKPDRLVDPE 63 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A + GI+ + A+ + ++ + +N FD + F + Sbjct: 64 AFGVHGISDEFLADKP-TFADVADDFIEYIRGGE---LVIHNATFDIGFMDYEFDMLGRN 119 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-- 174 + D L + R ++ L L+ I++ Sbjct: 120 LPKTE--TFCKITDSLAMARKLFPG--------------KRNNLDALSDRYLIDNSKRTL 163 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 H A D + ++ + + +N Sbjct: 164 HGALLDSEILAEVYLMMTGGQTSIKFTHEGEQN 196 >gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera] Length = 332 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 27/210 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G A DR + D + + + + +P+P + GI Sbjct: 127 TVIVFDTETTGLSRANDRIIEIGLQ--DLGGGENSTFQTLVN--PERIVPNP---HVHGI 179 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 T R V + + Q+ P I + +N FD + N F R Sbjct: 180 TTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCN--- 236 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 D L + R + + D LQ L I AH Sbjct: 237 --TEVPPNWRFLDTLPLARELIK--------SAGSDLPPGASLQALREYYRIPLVGPAHR 286 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206 +DVY ++ ++ L D Sbjct: 287 VLSDVYTLSQVLQMLTFNLKVSVANLLDRS 316 >gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae 642] Length = 203 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 S L + R GA + KL L + AH A A Sbjct: 106 QRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + + Sbjct: 153 DAEMAANLTVHLTNELRQTH 172 >gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 528 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 28/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V+ D ET G R + + V Q + +E + F + + P +T Sbjct: 21 PEKMVLLDLETTGGKATHHRIIEIG-LLVIEQGKVLERWQSF---VDPETVLPPFIQKLT 76 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P + +E + + + + + +N RFD + +N F R Sbjct: 77 GIAPSMLRGAPL-FSEVAETLLTYLNDR---TLVAHNARFDYGFLKNEFQRIGISYNAKP 132 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L ++ + L + + N H A D Sbjct: 133 ----------LCSVKFSRSLY----------PQFKRHGLDQIIKRFQLPIENRHRALDDA 172 Query: 182 YATLALV 188 Sbjct: 173 EMIQRFF 179 >gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28] Length = 459 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D ET G D + AGV++ + E I+ E F + + +TGI Sbjct: 343 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 398 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 T ++ + +F I+ +N FD + + + + Sbjct: 399 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE 447 >gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 895 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G D Q + + +E + S D P +T I Sbjct: 5 TYAVVDLETTGNQKDYDDIIQIG-ITFVKGFEIVGSYHSL---IKTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q + E + I++ + +N+ FD + + F ++ Sbjct: 61 EDQMLTQAPY-FNEVAEEIYELMKDS---VFVAHNVAFDLTFLKKAFKKS---------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + S++L +LA + I NAH A D Sbjct: 107 ---------NITYQPRKVIDTVELFKIAFPTDKSYQLSELAEYHDIPLENAHRADEDAAT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ L Sbjct: 158 TAKLMIKAFNVLYTLPTDTLK 178 >gi|313674243|ref|YP_004052239.1| exonuclease RNAse t and DNA polymerase iii [Marivirga tractuosa DSM 4126] gi|312940941|gb|ADR20131.1| Exonuclease RNase T and DNA polymerase III [Marivirga tractuosa DSM 4126] Length = 267 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N VI+D ET G +V DR +++ V+V + I++TE K + E+ I Sbjct: 5 LKNPLVIFDLETTGTNVVNDRIVEYSFVKVMPDGDVIKNTE----KVNPERPIPLESSLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + ++ + F + G+N ++FD F R D Sbjct: 61 HGIYDKDVKDKP-TFKAMAKELSSFL--HGCDLAGFNILKFDVPVLVEEFLRADVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + ++K G E V+AH A+AD Sbjct: 114 -----------FDISKRKLLDAQKIFHMMEKRTLTAAYKF-----YCGKELVDAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 ATL ++ ++ Sbjct: 158 TLATLEVLDAQIKRYEGESLMDLK 181 >gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 242 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + DPEA+ Sbjct: 11 VILDTETTGMNQGSGAIYLGHRIIEIGCVEV-VNRRLTGRYYHQY--INPGQAIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ ++ + ++ F + I +N FD + + F + Sbjct: 68 VHGITDERVSKEPRFH-QVAQDFINFI---DGAEIVAHNANFDVSFMDHEF--SLLQPRG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L + + ++ + L L G++ H A Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKN--------------NLDALCKRYGVDTSRREYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188 >gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes LO28] Length = 132 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 15/140 (10%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++ D ET G + DR QFA V +++E+ F + + Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+P+ + E + + I I +N+ FD + R Sbjct: 59 TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109 Query: 121 SWDNGNSRWDLLDVMRAIYA 140 + D +++ R +Y Sbjct: 110 -SLGKMKKLDTVELARIMYP 128 >gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116] Length = 249 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V + + + + + E+V I Sbjct: 59 FVSVDFETTGLNAEQDAILTIGLVPF-----TLGRVQCSGSRHWVVNPNRELNEESVVIH 113 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + +E + I + I+ + + + +N + + + Sbjct: 114 GITDSEVKNAPQLE-QILDAILDELA---GKIVVVHYKSIERQFFKNALLNSLGEGIQ-- 167 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D LD+ AI +G + S +L + H A D Sbjct: 168 ----FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLPSYQPHHALTDA 223 Query: 182 YATLALVWLIREKK 195 AT L+ + Sbjct: 224 LATAELLQAQLQYH 237 >gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 19/190 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D + A +RV + + E V +P DPEA+ + Sbjct: 1 MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + V + + ++ +N+ FD + + + Sbjct: 61 GYRRRAWADA-VSLGDAMSELAPMLE---GAVLAGHNVAFDRSFLEAAWDYVGHRPEN-- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D + + S L + G+ H A DV Sbjct: 115 --LDHHALDTATLAFPL-----------LMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161 Query: 182 YATLALVWLI 191 A L + + Sbjct: 162 RACLGVARRL 171 >gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA] gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA] gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400] Length = 181 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 49/182 (26%), Gaps = 26/182 (14%) Query: 8 YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G DR + A V VD + + I GIT Sbjct: 10 IDVETTGLFPGYGDRVVEVAAVLVDE-GQIVSEFSSL---IRVTKAIPRHVSMIHGITND 65 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E E + F T ++ +N RFD + R+ F R Sbjct: 66 MLADQPLPE-EVYPALGDFI---GTALLVAHNARFDLAFLRHEFGRLGLSLNS------- 114 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 R+ + P D Q L A E H A D T Sbjct: 115 ---------RSACTLELARRRLPELTDHRLETVYQHLFGAV-PEGTRCHRALDDARLTAR 164 Query: 187 LV 188 + Sbjct: 165 VW 166 >gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 329 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 76/279 (27%), Gaps = 29/279 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A RVD + E + + P P V+I G+T Sbjct: 21 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 74 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + + + ++ +N FD + R + Sbjct: 75 SEVLEGAPL-FPEIAEELSRRL---DGRVLVAHNAVFDWSMLAREYARAGITAPVR---- 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL+ LA G+E AH A D Sbjct: 127 --RRLCTIALAKELAL-------------PLPNHKLETLAAHFGVEQRRAHHALDDARVL 171 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L + T A + P Sbjct: 172 AEAFRPSLRAAALGGVRLPLLECRPLTEWSDSPARPTIGRQYGSRPAAGNWRPSRKRPPC 231 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 +P G L MR+ D+ + L E Sbjct: 232 PYPNPGRWQDGQPLVQGMRIAFSGDTSTERELLEDRATE 270 >gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Lactobacillus casei ATCC 334] gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus casei ATCC 334] Length = 301 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 26/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G D D V+ + E +TG++ Sbjct: 130 FVALDIETTGLDAERDAIIAIGAVK-GPSVNETEKFTTL---VNPRRPLPSTVAKLTGLS 185 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + +G+ +E + + F + + N+RFD + Sbjct: 186 AEELVANGISLSEAVQALRDFT---GSLPLVGYNLRFDMGFLSAAGRETGLT------SF 236 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 GN +DLL +++ F + +KL + I++ H A +D AT Sbjct: 237 GNQTFDLLPLVKKSSRFLDN-------------YKLSTVLAHYQIDNEQPHHALSDATAT 283 Query: 185 LALV 188 +AL Sbjct: 284 MALA 287 >gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] Length = 238 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 70 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 126 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRAFHGALLDSE 171 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200 >gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1] gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 207 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 22/200 (11%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + ++D E+ G + DR + V++ + I+ F ++ I GI Sbjct: 18 YCVFDIESTGINPFDGDRIVEIGAVKIKPGF-VIDYKNKFHVLVNPGIPIPEDSQKIHGI 76 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F CI +N R D + R I D Sbjct: 77 TDEDVANAP----DECEAYYNFIEFAKGCIPVAHNARKDMAFLRRISKEYLIDEPFEFVL 132 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + ++V+ + ++ R H A D A Sbjct: 133 DTLALSKKVNVLSRYHNLDALIEKYNVRIKSN----------------YKRHRALYDAEA 176 Query: 184 TLALVWLIREKKPKLFEYLY 203 T + ++ + + Sbjct: 177 TSVIFKIMMNDIYNKYRFSL 196 >gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] Length = 249 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 51/200 (25%), Gaps = 10/200 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G D VR+ F+ +A I +T Sbjct: 49 FVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGE--AFYTLVRPPAAVPRDATLIHRLT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F ++ +++ D + R+ + Sbjct: 107 GAALADAPP----VAEALAAFLDFLGPAVVVGHHVDLDMGFLNAAARRHMGGELAAPCID 162 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + G ++L L G+ AHDA+AD AT Sbjct: 163 TLR----LAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALAT 218 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + + Sbjct: 219 AYLFLYLARHCGRARPLTLS 238 >gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] Length = 1468 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G DR + A D + + P YL + +TGIT Sbjct: 308 IVFDLETTGLAKLKDRIIEIAA--YDLNDK-THAPMSTLVNPGRTYL-TGQITRLTGITN 363 Query: 66 QKALRDGVVEAEFSRRIHQFFSV--------PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GV + + + F + + +N +FD + + + R Sbjct: 364 AMVSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDR----- 418 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG---IEHVNA 174 + + + D L + R + + + S K++ LA ++ A Sbjct: 419 IQREFPDDWRFVDTLPIAR----------KLVPKTEVFGSHKMEALATRYDVKPVDGETA 468 Query: 175 HDAKADVYATLALVWLI 191 H A AD +V + Sbjct: 469 HRAGADARVLGEIVEAM 485 >gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232] gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232] Length = 1469 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 57/482 (11%), Positives = 129/482 (26%), Gaps = 51/482 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI+D ET G + +F V + + +IE + F P ITGI Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVL-QNGIEIEKHQFF---IKPTGKIPPAITKITGI 465 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +I + ++ +N FD + + + Sbjct: 466 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 516 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L+V R + S L+++A IE+ AH A D Sbjct: 517 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDA 563 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + + KN + +L + + + Sbjct: 564 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIIAKNQIGIKKLYK 623 Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + +A +I + + + T V Sbjct: 624 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 683 Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P + + + ++ K + L+ + K Sbjct: 684 EIPPPSAFIHLVKREIFTKDQIEEMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 743 Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403 + ++ + D + + + + E+L D+ +L Sbjct: 744 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 800 Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 +N ++ ++ K L + + KL+ + ++ L + Sbjct: 801 VVKN--SNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKAYEKYGRFLPKLIENR 858 Query: 464 LQ 465 ++ Sbjct: 859 IK 860 >gi|227497246|ref|ZP_03927486.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] gi|226833294|gb|EEH65677.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] Length = 249 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 15/204 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ +D ET G D + DR A V R R E EV P A + GI Sbjct: 17 FLGFDTETTGVDPSQDRLVTAALVMRGPRHGEGTRRQEVVTWLADPGVPIPPGASAVHGI 76 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + ++A +G + + Q + + N FD + R+ + R Sbjct: 77 STERAQAEGRPAPQVLEEVAQRLAQAMGAGTPVVAFNASFDLTLMEHELARHGLATLRE- 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 G +LD + A +L + G++ A H A+ D Sbjct: 136 -RLGGPLAPVLDPLVLDRAV---------DRFRKGKRRLDAMCQVYGVQVDEALHTAEVD 185 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 V ATL ++ + P+L + Sbjct: 186 VAATLDVLEALAHAYPELAQMSLS 209 >gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 239 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G R + V + Q + + + T Sbjct: 38 NTLVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITARFSELM---NPGFRINSFIEDYT 93 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q AE R F + +N FD + F + + Sbjct: 94 GISNQMLAHA-APCAEVMARFAAFIGKH---HLVAHNAAFDQRFLDAEFAQIGH------ 143 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 + F + A + +L L + H A AD Sbjct: 144 --------------QYPGQFGCSLLLARRLYPEAINHQLATLVRHKQLPTDGTFHRALAD 189 Query: 181 VYATLALVWLIREKKPKLF 199 T L + + + Sbjct: 190 AEMTGHLWLRMLADLKQGY 208 >gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 244 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 58/205 (28%), Gaps = 27/205 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + + F + I +N FD + F Sbjct: 61 TEFLSDKPK-FAEIADQFRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TY 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 + + + L + + Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184 >gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 235 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 53/175 (30%), Gaps = 17/175 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V + + EA I GIT + Sbjct: 11 FDLETTGTDPEESRIVTAAVVDTLGGGVQGAT----TWLLDPGVPIPDEAAAIHGITDAE 66 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G AE I + + + N FD R+ + G Sbjct: 67 ARANGRPAAEAIEEIARTLAERLAAGRPVVAFNAPFDLSLLDAELRRHGLPTLAD--RLG 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++D M A S LQ + G+E +AH+A +D Sbjct: 125 GPVAPVVDAMVVDRAL---------DKYRKGSRTLQRVCEVYGVELRDAHEAGSD 170 >gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] Length = 470 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501] gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501] gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166] Length = 241 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G V R + V E I + D D A+ + Sbjct: 4 VVLDTETTGMPVTDGHRIIEIGCV------EVIGRRLTGRHYHVYLQPDREVDEGAIAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + + +F + +N FD + N + R Sbjct: 58 GITNEFLVDKPR-FRDIADEFFEFIKDAQ---LVIHNAAFDLGFINNE-FALLGQQDRAE 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + + D L + R + + L L G+++ H A Sbjct: 113 ITDHCTVLDTLLMARERHPGQRN--------------SLDALCKRYGVDNSGRDLHGALL 158 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 159 DAEILADVWLTMTGGQTN 176 >gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330] Length = 463 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 59/209 (28%), Gaps = 43/209 (20%) Query: 1 MTNHF--------------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK 46 M +F VI D ET G DR + A +R + + Sbjct: 10 MMMNFSDLAQFFDTLNMPVVILDLETTGGHFVQDRITEVAFLRFWQ-----GDVQRVSYL 64 Query: 47 PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106 P +TGI Q R ++ + + + +N RFD + Sbjct: 65 VNPQKEISPFVQKLTGIDNQMVRRAPA----LAKILPDLLPLLRGALFIAHNSRFDYTFW 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN R + L ++ P + L + Sbjct: 121 RNECQRAGVAFAALT----------LCSVQLSRKLYPQYHK----------HSLDSIIER 160 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKK 195 NG+ + H A ADV A + ++ Sbjct: 161 NGLIVPSRHRAMADVDALAQFLQQALQEH 189 >gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 332 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 69/279 (24%), Gaps = 30/279 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D Q + P P +I G+T Sbjct: 27 YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTL---VNPRRDPGP--TWIHGLT 80 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + + ++ +N FD + R Sbjct: 81 SAMLQDAPL-FADIAEEFAGRLADR---VLVAHNAIFDWQMIAREYARA----------- 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + KL+ LA G+ AH A D Sbjct: 126 --------SATAPVRQRLCTIALSKELNLPLPNHKLESLAAHYGVVQQRAHHALDDARVL 177 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + L + D + + S + P Sbjct: 178 AEAFRPSLHAAARD-GVRLPLLECRPLTEWSDSPATPRVGYQSSYGNGGSWRASRKRPPC 236 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 +P G L MR+ D+ + L E Sbjct: 237 PYPNPGRFEDGKPLRQGMRIAFSGDTSVDRELLEDRAVE 275 >gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 484 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 56/191 (29%), Gaps = 30/191 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G + A DR + V VD + V + P +TGI Sbjct: 12 LVFVDLETSGANFASDRVIEVGLVEVDADG--VREWSVL---VNPEAPISPFITRLTGID 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ +N RFD + + F R + Sbjct: 67 DAMVGSAP-TFRQLAPTLL---DRLRGRLLVAHNARFDYGFLQCEFKRLGVE-------- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYA 183 R L ++ P+ + L L +G++ N H A AD Sbjct: 115 --FRTPTLCTVKLSRKLFPEHHR----------HNLDALVTRHGLKVAGNRHRALADARI 162 Query: 184 TLALVWLIREK 194 L + Sbjct: 163 LWELWQCWHKD 173 >gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] Length = 249 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V + + + + + E+V I Sbjct: 59 FVSVDFETTGLNAEQDAILTIGLVPF-----TLGRVQCSGSRHWVVNPNRELNEESVVIH 113 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + +E + I + I+ + + + N + + + Sbjct: 114 GITDSEVKNAPQLE-QILDAILDELA---GKIVVVHYKNIERQFFNNALLNSLGEGIQ-- 167 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D LD+ AI +G + S +L + H A D Sbjct: 168 ----FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLPAYQPHHALTDA 223 Query: 182 YATLALVWLIREKK 195 AT L+ + Sbjct: 224 LATAELLQAQLQYH 237 >gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 243 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 28/199 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + + DR + V VDR F D EAV + GI Sbjct: 4 IVLDTETTGLEWSQGDRVIEIGCVELVDR--RPTG--NNFHQYLNPDREVPQEAVEVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + R ++ + +N FD + R R Sbjct: 60 TNDFLADKPRFH-EVAERFVEYIRGSE---LVIHNAAFDVGFLDYELSRLGRGWGRVE-- 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 + S D L + R + + L L +++ H A D Sbjct: 114 DFASVLDTLLLARQRHPGQRN--------------SLDALCKRYDVDNTQRELHGALLDA 159 Query: 182 YATLALVWLIREKKPKLFE 200 + + + LF Sbjct: 160 RILADVYLAMTGGQKALFT 178 >gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] Length = 231 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 35/192 (18%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFIT 61 +I+D ET G D DR + V E I+ E F + A + Sbjct: 4 IIFDTETTGFDPRNGDRLVEIGCV------ELIDRRETGVTFHAYFNPERDMPAAAEAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ Q + F+ R+ + + +N FD + R Sbjct: 58 GLSSQFLSDKPL----FAARVDELLDFFGDAPLIAHNAAFDFGFVNAELERIGRPP---- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 LD+ R P L L GI+ H H A Sbjct: 110 ----------LDMARMCCTVQMARKLHPGA-----KHSLDALCTRYGIDRSHRIKHGALL 154 Query: 180 DVYATLALVWLI 191 D L + Sbjct: 155 DAELLAHLYIEM 166 >gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 235 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D E G + D + VRV R + ++ C+ + + +T Sbjct: 1 MQDYVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ---NVKIPEKVTELT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT G+ + E R+ +F II N+ FD + + + Sbjct: 57 GITEAMVQG-GMEKEEAMRQFFEFI---GEDIIVGQNVIFDYGFLKQWAVNHNMP----- 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D L + R L+ L G++ NAH A D Sbjct: 108 --LERNAVDTLKLARKF-------------LPKEQKKDLESLCACFGVKRENAHRAFDDA 152 Query: 182 YATLALVWLIREKKPKL 198 Y T + +RE+ + Sbjct: 153 YETWQVYEALRERYEEE 169 >gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 203 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMAQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 S L + R GA + KL L + AH A A Sbjct: 106 ERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + + Sbjct: 153 DAEMAANLTAYLTNELRQTH 172 >gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 19/190 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D + A +RV Q E V +P DPEA+ + Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + V + + ++ +N+ FD + + + Sbjct: 61 GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRPEN-- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D + + S L + G+ H A DV Sbjct: 115 --LDHHALDTATLAFPL-----------LMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161 Query: 182 YATLALVWLI 191 A L + + Sbjct: 162 RACLGVARRL 171 >gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] Length = 238 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YKVEAGALAIHGLT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 70 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 126 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 171 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200 >gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] Length = 215 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 29/201 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G D+ +R V+ + ES F KP + V I G Sbjct: 39 TFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFH-RFVKPKELTRVS---VEIHG 94 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP + + ++ + ++G+N + + Sbjct: 95 ITPHELEKKAESHDRVLEDFMEYVR--GSVLVGFNVEFDRKIVEKYSLKVLGLPLLNY-- 150 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R D+ + W R S L+D+A GI V AH A D Y Sbjct: 151 -----RLDVFRL-------------WKKRGGREGS--LKDIAEELGIPVVGAHSALDDAY 190 Query: 183 ATLALVWLIREKKPKLFEYLY 203 T + + ++ Sbjct: 191 ITALVFLKLLKRFRGANLSSL 211 >gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1710b] gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1] gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229] gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710b] gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1] gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10229] gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668] gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106a] gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] Length = 253 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + F+ P D DP A+ + G+T Sbjct: 17 IILDTETTGLNARAGDRIIEIGCVEL-LNRRLTGKNLHFYVNPERDS--DPGALAVHGLT 73 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F I +N FD + F S+ Sbjct: 74 TEFLSDKPK-FAEIVDPLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPSFTDHCAG 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 130 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 172 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 173 LLAEVYLAMTRGQESLVIDML 193 >gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J] gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J] Length = 1468 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 57/482 (11%), Positives = 129/482 (26%), Gaps = 51/482 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI+D ET G + +F V + + +IE + F P ITGI Sbjct: 409 KFVIFDLETTGLSAFYNEIVEFGAVVL-QNGIEIEKHQFF---IKPTGKIPPAITKITGI 464 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +I + ++ +N FD + + + Sbjct: 465 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 515 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L+V R + S L+++A IE+ AH A D Sbjct: 516 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDA 562 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + + KN + +L + + + Sbjct: 563 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIIAKNQIGIKKLYK 622 Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + +A +I + + + T V Sbjct: 623 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 682 Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P + + + ++ K + L+ + K Sbjct: 683 EIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 742 Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403 + ++ + D + + + + E+L D+ +L Sbjct: 743 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 799 Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 +N ++ ++ K L + + KL+ + ++ L + Sbjct: 800 VVKN--SNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKAYEKYGRFLPKLIENR 857 Query: 464 LQ 465 ++ Sbjct: 858 IK 859 >gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei K96243] gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344] gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247] gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98] gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14] gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91] gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9] gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei B7210] gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894] gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC 13177] gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112] gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei BCC215] gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei K96243] gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 23344] gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10247] gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] Length = 240 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRIIEIGCVEL-LNRRLTGKNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F I +N FD + F S+ Sbjct: 61 TEFLSDKPK-FAEIVDPLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPSFTDHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 235 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D E G + D + VRV R + ++ C+ + + +T Sbjct: 1 MQDYVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ---NVKIPEKVTELT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT G+ + E R+ +F II N+ FD + + + Sbjct: 57 GITEAMVQG-GMEKEEAMRQFFEFI---GEDIIVGQNVIFDYGFLKQWAVNHNMP----- 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D L + R L+ L G++ NAH A D Sbjct: 108 --LERNAVDTLKLARKF-------------LPKEQKKDLESLCACFGVKRENAHRAFDDA 152 Query: 182 YATLALVWLIREKKPKL 198 Y T + +RE+ + Sbjct: 153 YETWQVYEALRERYEEE 169 >gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 238 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YKVEAGALAIHGLT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 70 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 126 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 171 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200 >gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + F C + + A+ + G+T Sbjct: 4 IVLDTETTGLNPRSGDRVIEIGCVEM-INRRLTGK--NFHCYLNPERDSEEGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + + + S I +N FD + F R + Sbjct: 61 TEFLRDKPK-FAAVAAELRDYISGAEVII---HNAPFDVGFLDAEFKRLDIPLF---NTQ 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + ++ L L G+ H H A D Sbjct: 114 VSGVIDTLVQAKEMHPG--------------KRNSLDSLCDRYGVSNAHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLAEVYLAMTRGQNS 174 >gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 331 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 79/287 (27%), Gaps = 41/287 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A RVD + E + + P P V+I G+T Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + + + ++ +N FD + R + Sbjct: 73 SEVLEGAPL-FPEIAGELSRRL---DGRVLVAHNAVFDWSMLAREYARAGITAPVR---- 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL+ LA G+E AH A D Sbjct: 125 --RRLCTIALAKELAL-------------PLPNHKLETLAAHFGVEQRRAHHALDDARVL 169 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLV------HVSGMFGASRSN 236 L + R P++ A Sbjct: 170 AEAFRPSLRAAALGNVRLPLLECR----PLTEWSDSPARPVIGRQYGGQYGSRPAAGNWR 225 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 + P +P G L MRV D+ + L E Sbjct: 226 PSRKRPPCPYPNPGRWEDGRPLVQGMRVAFSGDTSTERELLEDRATE 272 >gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 239 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 26/193 (13%) Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + D R + V + + + D A+ + GIT Sbjct: 4 IVLDTETTGLETSQDHRIIEIGCVEL-VGRKLTGRHYHQYV--NPQRKVDVGAMEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + E +R +F ++ +N + + I N S Sbjct: 61 DQFLEDKPLFET-VAREFLEFVD--GADLVIHNAPFDVGFINHEIAKLNGAYQAIES--- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 G D L + R + + L L G+++ H A D Sbjct: 115 GCRIIDTLALARQKHPGQKN--------------NLDALCKRYGVDNSQRDLHGALLDAE 160 Query: 183 ATLALVWLIREKK 195 + L+ + Sbjct: 161 ILADVYLLMTGGQ 173 >gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 330 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D Q + + P P V+I G+T Sbjct: 21 YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTL---VNPERDPGP--VWIHGLT 74 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + ++ +N FD + R Sbjct: 75 TDVLAGAPL-FPEIAAEFAARL---DGRVLVAHNAMFDWQMIAREYARA----------- 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + KL+ LA G+ AH+A D Sbjct: 120 --------ESAAPVRQRLCTIALAKELSLPLPNHKLESLAAHFGVVQQRAHNALDDARVL 171 Query: 185 LALVW 189 Sbjct: 172 AEAFR 176 >gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A] gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A] Length = 287 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 69/233 (29%), Gaps = 24/233 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++D ET G D+ DR Q + ++V ++ E +F E + + Sbjct: 5 LKRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKE-ERENIF---INPGKQIPEEVIAL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + E + + G+N+ RFD F R + Sbjct: 61 TGITNEDVAKAP-TFKEKGKELS--LKFTGCDFAGFNSNRFDIPMLAEEFLRAGIEFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + E AH A D Sbjct: 118 KCQ-----------------LVDAQSIFHKMERRNLAAAYEFYCGRKMEEDFKAHRADQD 160 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 AT A++ E + +N + L D M V +G Sbjct: 161 TEATWAVLQGEIEMYSSKNQTDEKRILENSVDALADFSKMNDFVDFAGRIIWK 213 >gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis MSMB43] Length = 241 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + S F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRIIEVGCVEL-LNRRLTGSNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++ F I +N FD + F S+ Sbjct: 61 TEFLSDKPK-FAEIVDQLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPSFTDHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862] Length = 940 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 27/202 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET R Q A V + + I + +TG Sbjct: 5 DIYAVVDLETTRTTSETGRIIQIA-VAFVQNKKIINQFSTL---VNPGEQIPRNIIQLTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +H I +N+ FD + F R + + + Sbjct: 61 ITQNMVKGAP-FFEDVAMTLHAMLQ---GTIFVAHNVNFDLPFLNAEFERVGLTALKST- 115 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + + ++ A ++L D+ +EH + H A +D Sbjct: 116 -----ALDTVPLSQILW-------------PTAPGYRLVDMTNCLSLEHNHPHQADSDAL 157 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ I ++ L Sbjct: 158 ATGELLIAILKRAEGLPMITLQ 179 >gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 247 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 58/203 (28%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 + ++ D ET G + R + V + + F D DPE Sbjct: 6 DRIIVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIDPE 62 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + A+ +F + +N FD + + F D Sbjct: 63 AISVHGITDEFLRDKP-SYADIHAEFLEFIKGAE---LVAHNAPFDTGFMDHEFQ--MLD 116 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 + D L + + I+ L L GI+ H Sbjct: 117 PSIGKTGDFCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 162 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 163 HGALLDAEILADVYLLMTGGQTT 185 >gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct] Length = 265 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + F+C P Y + A+ I G+T Sbjct: 31 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++ + + +N FD + + Y N Sbjct: 88 NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 143 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D LD+ R + + L L +H H A D Sbjct: 144 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 189 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211 + + + L +KN + Sbjct: 190 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 218 >gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4] gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4] Length = 242 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 26/193 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + R + GV + + F C + D A+ + G++ Sbjct: 4 IILDTETTGLEPKEGHRIIEIGGVEL-INRRRTGQ--TFHCYLNPERRVDEGALKVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + F + +N FD + + + S Sbjct: 61 NEFLSDKPR-FVEVAEEFLAFIREAE---LVIHNAPFDVGFLDHEL--SLLGSQWGKVSL 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R + + L L G+++ + H A D Sbjct: 115 YCQVLDTLVLARQRHPGQKN--------------SLDALCKRYGVDNSRRDLHGALLDAE 160 Query: 183 ATLALVWLIREKK 195 + + + Sbjct: 161 ILAGVYLAMTGGQ 173 >gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] Length = 228 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 56/220 (25%), Gaps = 29/220 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + EA + G+ Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGNTYHQYINPERSMPAEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + F + +N FD + W Sbjct: 61 DEFLRDKPK-FAQIGQDFLDFIGDSK---LVIHNAAFDIKFLNAELKWMGLPQIPWEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L GI++ + H A D Sbjct: 116 ----LDTLAIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + + + F K P Sbjct: 158 ILADVYLELIGGRQPDFGLSTKPEKKEGDTTPDWTPKPRP 197 >gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] Length = 246 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 33/197 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G + A R + V E ++ + + L D A+ + Sbjct: 7 IVLDTETTGLEPAEGHRIIEIGCV------ELVDRRHTGRHYHQYINPERLVDAGAMAVH 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + AE + +F N + +N FD + + F + Sbjct: 61 GITNEFLADKPK-FAEIADAFFEFI---NGAELVIHNAAFDVGFINHEFNLLKR---FGT 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 S D L + R + + L L I++ H A Sbjct: 114 VGEHCSVLDTLLMARKKHPGQKN--------------NLDALCRRYEIDNSQRELHGALL 159 Query: 180 DVYATLALVWLIREKKP 196 D + + + Sbjct: 160 DAQILADVYLAMTGGQT 176 >gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 475 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 28/193 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 D E G + DR + + V EV+ + P +TGI Sbjct: 8 TLAFIDLENTGGHLERDRIIEVGIILVAPAG----EPEVWSTLINPEIRLSPAISTLTGI 63 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P A+ + + + + ++ ++ R D + R + R Sbjct: 64 DPADLAHAP-TFAQVAEPLREKLA---GRLLIAHDARTDLAFLRQEWRRLGQ-------- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+L +R + PD L + + H A D Sbjct: 112 --VFTADVLCTLRLSRSLFPD----------EKRHGLDAIIERLQLHSAGRHRALTDART 159 Query: 184 TLALVWLIREKKP 196 + + ++P Sbjct: 160 VAIFLARLYSEQP 172 >gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 412 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 28/203 (13%) Query: 1 MTNHFV-IYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ F I D ET G DR A+ A V ++RQ ++S E ++ Sbjct: 1 MSGEFFSIVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETL---INPQRDLGKQS- 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I I + L + + +H S ++ +N+ FD + F + Sbjct: 57 -IHRIQSRDVLDAP-SFKDLAEELHWRLS---GTVLVAHNLSFDSRFLEAEFRKCGLPVP 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 G + MR + + + LQD + GI+ AH A Sbjct: 112 ETFLAQG------MCTMRMSHRYLQGAGR-----------SLQDCCDSFGIDLQQAHSAV 154 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D AT L+ E P E+ Sbjct: 155 GDATATATLLSRYMELDPDEPEW 177 >gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] Length = 284 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T V++D ET G D+ DR Q + +++ + E E P E + Sbjct: 5 LTRPLVVFDLETTGLDLVNDRIIQISYIKIYPDGK--EERENLLVYPQ--RPIPDEVSEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 TGIT E E + R+++ F G+N+ FD F R D Sbjct: 61 TGITTDLVEDAPTFE-ELAPRLNEVFK--GCDFAGFNSNHFDIPMLAEEFLRAEIDF 114 >gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22] gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 233 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 55/190 (28%), Gaps = 18/190 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V A + G+T ++ Sbjct: 4 FDTETTGVDVETDRIVSAAVVVQDAPGT---RPRVTRWLVNPGVPVPAGATAVHGLTDER 60 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 RDG A I + + ++ N FD R+ Sbjct: 61 LQRDGRWPAPVMEEIARALAEQAVRGRPLVVMNAP-FDLTLLDRELRRH----------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D + P + L DL + AHDA AD A Sbjct: 109 RASSLDRWFEATPLRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEVVLDGAHDAGADAQAA 168 Query: 185 LALVWLIREK 194 + +V + + Sbjct: 169 MDVVRAVGRR 178 >gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] Length = 229 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 51/199 (25%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G R + V + Q + + + T Sbjct: 28 NTLVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITARFSELM---NPGFRINSFIEDYT 83 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q AE R F + +N FD + F + + Sbjct: 84 GISNQMLAHA-APCAEVMARFAAFIGKH---HLVAHNAAFDQRFLDAEFAQIGH------ 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180 F + A + +L L + H A AD Sbjct: 134 --------------HYPGQFGCSLLLARRLYPEAINHQLATLVRHKQLPSDGTFHRALAD 179 Query: 181 VYATLALVWLIREKKPKLF 199 T L + + + Sbjct: 180 AEMTGHLWLRMLADLKQGY 198 >gi|330991910|ref|ZP_08315859.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1] gi|329760931|gb|EGG77426.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1] Length = 309 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 32/187 (17%) Query: 7 IYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A D +F V + + + + E F P+ +TGIT Sbjct: 57 FLDLETTGLSAAKDEIIEFGIVPFVYTLEGKILGTLEPFSRLREPSCPIPPQITALTGIT 116 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P V E + + +I +N FD ++ Sbjct: 117 PDMVAGQRVTADEVAGFV------APASLIIAHNANFDRKFAEA---------------- 154 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + ++ +G KL L + G H A D A Sbjct: 155 -------FSPVFTTKPWACSMRDVDWAAEGYEGRKLSYLGMQAGFWFDG-HRAVDDCQAG 206 Query: 185 LALVWLI 191 +A++ + Sbjct: 207 IAILDRV 213 >gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] Length = 855 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G + D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R + + Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 AT ++ + ++K K ++K I Sbjct: 648 ATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYK 684 >gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56'] gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56'] Length = 298 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 52/187 (27%), Gaps = 29/187 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D E G DR + R E +P + GI Sbjct: 33 LVFLDLEMTGLRPESDRVIEVCAERTRGDA--CEDAITSLVRPEPGVF---GNAHVHGID 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P++ AE RI Q ++ + +D + R + Sbjct: 88 PRELAGAP-TFAELCDRIDQVTE---GAVLVAHAAAWDVAFLEAELARAGRARRLPHY-- 141 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R +A S L L G+ AH A+ DV+A Sbjct: 142 ----LDTLVLSRRAFAL--------------PSHSLASLCRELGVHRERAHRAEDDVHAL 183 Query: 185 LALVWLI 191 A+ I Sbjct: 184 RAVFRKI 190 >gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 242 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + DPEA+ Sbjct: 11 VILDTETTGMNQGSGAIYLGHRIIEIGCVEV-VNRRLTGRYYHQY--INPGQAIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ ++ + ++ F + I +N FD + + F + Sbjct: 68 VHGITDERVSKEPRFH-QVAQDFINFI---DGAEIVAHNANFDVSFMDHEF--SLLQPRG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L + + ++ + L L G++ H A Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKN--------------NLDALCKRYGVDTSRREYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188 >gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 470 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVVGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPVLCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 386 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 46/192 (23%), Gaps = 29/192 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V D ET G R + V V + + Sbjct: 11 LAEPIVFVDLETTGGSTNEHRITEVGVVEVGPTG--VTRWSSL---VDPQQPIPSFIQQL 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT E + F+ + + +N FD + R F R Sbjct: 66 TGITNAMVRGAPT--FEAIA--PELFARLDGKLFVAHNASFDRGFLRGEFRRVGISFDP- 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+L +R A L L + + + H A AD Sbjct: 121 ---------DVLCTVRLSRALF----------PSEKRHGLDALVERHALVPSDRHRALAD 161 Query: 181 VYATLALVWLIR 192 + Sbjct: 162 ADLIWQFWQRLH 173 >gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 212 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 53/229 (23%), Gaps = 37/229 (16%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G R + V + + + T Sbjct: 11 NTLVVLDFETSGLSPNQGARAIEIGAVLI-ENGVITQRFSELM---DPGFRISTFIEDYT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q E R F + +N FD + F Sbjct: 67 GISNQMLRNAAPCH-EVMARFADFI---GDNHLVAHNAAFDQRFLDAEFAH------IHH 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G LL R S + R + + H A AD Sbjct: 117 QYQGQFACSLLLARRLYPLASNHQLATLVRYKQLPN-------------NGTFHRALADA 163 Query: 182 YATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221 T L + + F + K + K I + Sbjct: 164 EMTGHLWLAMLADLQRDFAITSPPFSLMQKITQKTKADVAKFIRQYSAK 212 >gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] Length = 1461 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 67/204 (32%), Gaps = 30/204 (14%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D IE+ + + +P +P Sbjct: 2 YLIFDTETTGLPKNWNAPLTDSDNWPRCIQIAWQVHDEMGNLIENQD-YLVQPDGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I GI+ A GV E + + + N+ FD F R Sbjct: 61 -DSERIHGISTDLAKEQGVPLDEVLEKFNIALQKSK--FVVGQNVGFDLNIMGAEFIRRD 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 +++ + V+ + + + P G FKL L Sbjct: 118 FEN----------SLQEMPVLDTCTEVTANLCKIPGGRGGK--FKLPTLTELHEFLFEEA 165 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + Sbjct: 166 FGEAHNATADVEATTRCFLELIRQ 189 >gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM 16608] gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM 16608] Length = 896 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 86/267 (32%), Gaps = 39/267 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58 V++D ET G DV D + A +R+ + E I + + LP +P Sbjct: 514 IVVFDTETTGLDVFSDDIIEIAAIRI-KGGEIIGDPLDLYIETDKPILPKLGDKENPMYS 572 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + A + A+ +R + T + +N +D N R Sbjct: 573 IYH---AKMAADRLLAPADALQRFLAYI---GTRPVLGHNASYDYNIIDNCLKR---YCN 623 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +GN +D L ++R + S+KL+ L ++ VN+H A Sbjct: 624 DTMQTHGNRCFDSLKLIRLLAPGLH-------------SYKLESLLETFRLKGVNSHRAI 670 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 DV AT++LV L K + + ++R D Sbjct: 671 DDVRATISLVHLCARKASEKQAKQTAFLRHPKVRPFADA----------LRRNYGEWYQE 720 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVF 265 + + + + LS F Sbjct: 721 AVGRLYRRSNNHEPALAKELSSTYDCF 747 >gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 +++D ET G + R + V + + F D DPEA Sbjct: 6 QRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEI-INRKLTG--NTFHVYIKPDRPIDPEA 62 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + + AE + F + + +N FD + F D Sbjct: 63 IDVHGITDEFLVGKP-SYAEIHQEFIDFI---DGAELVAHNASFDIGFMDYEFQLMGSDL 118 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175 + + D L++ + ++ L L GI+ H H Sbjct: 119 KKTE--DICKVTDTLEMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162 Query: 176 DAKADVYATLALVWLIREKKPK 197 A D + ++ + Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184 >gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] Length = 232 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 29/211 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G R + V +DR+ F + L D A + GI Sbjct: 4 IVLDTETTGIGHEQGHRVIEIGCVELIDRKL--TGRH--FHVYLNPERLVDEGAFRVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + F+ ++ +F + +N FD + + + + Sbjct: 60 SDEFLQDKPL----FADKVSEFLQFVGGAELIIHNAAFDMGFLNSELRHVQWKKKLEDY- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 +D L R + + L L GI+H N H A D Sbjct: 115 --CDVFDTLTYARDKFPGQRN--------------SLDALCKRFGIDHFNRQLHGALLDA 158 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 + + + LF + + N ++ Sbjct: 159 EILAFVYLAMTGGQSSLFADVEENANNTTVK 189 >gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 247 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 59/205 (28%), Gaps = 27/205 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + +I F + I +N FD + F Sbjct: 61 TEFLSDKPK-FADIADQIRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TY 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 + + + L + + Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184 >gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] Length = 212 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 39/230 (16%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G R + V + + + T Sbjct: 11 NTLVVLDFETSGLSPNQGARAIEIGAVLI-ENGVITQRFSELM---DPGFRISSFIEDYT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q E R F + +N FD + F Sbjct: 67 GISNQMLRNAAPCH-EVMARFADFI---GDNHLVAHNAAFDQRFLDAEFAH-----IHHE 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 + + L + R +Y + ++ +L L + + H A AD Sbjct: 118 YQGQFA--CSLLLARRLYPLA-------------SNHQLATLVRYKQLPNNGTFHRALAD 162 Query: 181 VYATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221 T L + + F + K + K I + Sbjct: 163 AEMTGHLWLAMLADLQRDFAITSPPFSLMQKITQKTKADVAKFIRQYSAK 212 >gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031] gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031] Length = 189 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 25/199 (12%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++ +D E+ G R Q A + D + S F +P +P Sbjct: 2 YLFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTGSGN-FIVRPEGFSIP- 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 PEA I GI+ +AL +G+ + + +N+ FD+ F R Sbjct: 60 PEAAAIHGISTAQALAEGLELKRVMEEFYAEVERAE--WLVAHNMSFDEKILGAEFLRLG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + + + + G +WP + + + Sbjct: 118 MPNIL---LAKKKICTMQESVDFCAIKNSYGNKWPKLSELHQKL--------FNCDFQES 166 Query: 175 HDAKADVYATLALVWLIRE 193 H+A DV T W ++ Sbjct: 167 HNASVDVAVTAKCFWELKR 185 >gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 459 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 25/183 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D A D VR +I + A I GI Sbjct: 258 VVLDTETTGLDAARDAIVSVGAVRC--HGSRIYRAAMLDLLVNPGRRIPARATAIHGIDE 315 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + ++ + ++ + I FD R+ R D Sbjct: 316 SMVAGKP----DLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLDW------TP 365 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R D+L + + + ++ D A G+ H A D T Sbjct: 366 PPRLDILLLS-------------AALAPDESGHEIDDQAARMGVNISGRHTALGDALVTA 412 Query: 186 ALV 188 L Sbjct: 413 ELW 415 >gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89517137|gb|EAS19794.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 466 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 64/207 (30%), Gaps = 30/207 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + +R + VR+ ++ + L +TGI Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMRGD-TILDKYSSL---IDPEVLIPDYITTLTGID 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V A+ + I F I +N+ FD RN F R +D R Sbjct: 64 NAMVASAPV-FADVAEEILNFTKD---YIFVAHNVNFDYNVLRNEFKRLHHDFKRKK--- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L GI +N H A+ D AT Sbjct: 117 -------LCTVRLSREL----------IPGMRSYSLGKLCDDIGIPLINRHRAEGDTDAT 159 Query: 185 LALVWLIREKKP--KLFEYLYDYRNKN 209 + L + +F K Sbjct: 160 VILFQKLITIDQEGDIFNKFIKGNFKE 186 >gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 55/190 (28%), Gaps = 19/190 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D + A +RV Q E V +P DPEA+ + Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + V + + ++ +N+ FD + + + Sbjct: 61 GYRRRVWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRP---- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N LD + G S L + G+ H A DV Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161 Query: 182 YATLALVWLI 191 A L + + Sbjct: 162 RACLGVARRL 171 >gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 331 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A RVD + E + + P P V+I G+T Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + + + ++ +N FD + R + Sbjct: 73 SEVLEGAPL-FPEIAEELSRRL---DGRVLVAHNAVFDWSMLAREYARAGITAPVR---- 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL+ LA G+E AH A D Sbjct: 125 --RRLCTIALAKELAL-------------PLPNHKLETLAAHFGVEQRRAHHALDDARVL 169 Query: 185 LALVW 189 Sbjct: 170 AEAFR 174 >gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 466 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G DR + ++ + +V+ +TGI+ Sbjct: 11 LAFVDIETTGSHFDRDRITEIG-IKTLAN----DGIQVWERLINPQTFIPQNIQRLTGIS 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ + ++ + Q I +N RFD + + F R D Sbjct: 66 PQMVEGQP-SFDQVAKELKQELE---GKIFVAHNARFDYGFIKASFKRVGIDFKPK---- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L ++ L + A+G++ H A D Sbjct: 118 ------VLCTVKLSRLLF----------PEQPRHNLDTIINAHGLQVSARHRALGDADLL 161 Query: 185 LALVWLIR 192 L + Sbjct: 162 LQFWRVCE 169 >gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 212 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 39/230 (16%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G R + V + + + T Sbjct: 11 NTLVVLDFETSGLSPNQGARAIEIGAVLI-ENGVITQRFSELM---GPGFRISSFIEDYT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q E R F + +N FD + F Sbjct: 67 GISNQMLRNAAPCH-EVMARFADFI---GDNHLVAHNAAFDQRFLDAEFAH-----IHHE 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 + + L + R +Y + ++ +L L + + H A AD Sbjct: 118 YQGQFA--CSLLLARRLYPLA-------------SNHQLATLVRYKQLPNNGTFHRALAD 162 Query: 181 VYATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221 T L + + F + K + K I + Sbjct: 163 AEMTGHLWLAMLADLQRDFAITSPPFSLMQKITQKTKADVAKFIRQYSAK 212 >gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 484 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 29/192 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G DR + A +R D + + + P +TGI + Sbjct: 45 IVDLETTGGSFDTDRITEIAFLRFDG-----GTVTPYHSLVHPERPIPPFIRRLTGIGDE 99 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + + CI+ +N +FD + R F R Sbjct: 100 TVAGAP-PFSALAHELLPLLR---GCILLAHNSKFDYTFLRRAFARCGLPFAA------- 148 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L+ + +GI + H A DV A Sbjct: 149 ---PTLCTVQLSRRLYPQFYK----------HSLESIIERHGIAAASRHRATDDVLAVAD 195 Query: 187 LVWLIREKKPKL 198 + ++ Sbjct: 196 YLETALREQGSE 207 >gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 316 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 28/224 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G ++ LDR + + ++V K EV + E+ Sbjct: 5 LKRPLAFFDLETTGVNIPLDRIVEISILKVMPDGNK----EVLTRRINPGMPIPAESSMF 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E + I F + + GYN+ +FD F R D Sbjct: 61 HGIYDEDVKDLP-SFKELGQEIADFIGDAD--LAGYNSNKFDVPMLMEEFLRANVDF--- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G + D+ ++ + + + NAH A+AD Sbjct: 115 -SLEGRNFVDVQNIFHQMEQRTLK----------------AAYKFYCDQDLNNAHTAEAD 157 Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 V AT ++ + + L+E + ++K + + + T L Sbjct: 158 VTATYEVLKAQLSRYEDVLYEDKHGNKSKPVVNDVAALHEFTNL 201 >gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 470 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 30/198 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 D ET G + A DR + + E + + +T Sbjct: 7 PQRLAFVDLETTGANAARDRVTEI-----GVVVVDGDRVETWSTLVNPERAIPQFIQQLT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + A + + + + + +N RFD + ++ + R Sbjct: 62 GISNEMVADAP-TFARVADELAERL---DGRLFIAHNARFDYGFLKHEYQRLGR------ 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180 R D+L +R P+ + L L +G+ + H A AD Sbjct: 112 ----RFRADVLCTVRLSRRLFPEHYR----------HNLDSLIARHGLATEGDRHRALAD 157 Query: 181 VYATLALVWLIREKKPKL 198 ++ + Sbjct: 158 ADLIWQFWRTLQREHEAQ 175 >gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 212 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 53/199 (26%), Gaps = 30/199 (15%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G R + V + Q + + + T Sbjct: 11 NTLVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITTRFSELM---NPGFRINAFIEDYT 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q AE R +F + +N FD + F + Sbjct: 67 GISNQMLAHA-APCAEVMARFAEFIGKH---HLVAHNAAFDQRFLDAEFAHIGH------ 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 + F + A + +L L + + H A AD Sbjct: 117 --------------QYSGQFGCSLLLARRLYPEAINHQLATLVRHKQLPNNGTFHRALAD 162 Query: 181 VYATLALVWLIREKKPKLF 199 T L + + F Sbjct: 163 AEMTGHLWLRMLADLKQDF 181 >gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 32/200 (16%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + A R + V V + + F D L DPEA+ Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEV-INRKLTGNH--FHVYIKPDRLVDPEAIQ 66 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + ++ + +F + +N FD + F + + Sbjct: 67 VHGITDEFLRDKP-SFSQIADEFIEFIRGAE---LIAHNAPFDVSFMDYEFGKLGLNFKT 122 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 + D L + R ++ L L GI+ H H A Sbjct: 123 ---ADICGITDTLAMARDLFPG--------------KRNNLDVLCDRYGIDNSHRTLHGA 165 Query: 178 KADVYATLALVWLIREKKPK 197 D + L+ + K Sbjct: 166 LLDAEILADVYLLMTGGQTK 185 >gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 235 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D E G + D + VRV R + ++ C+ + + +T Sbjct: 1 MQDYVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ---NVKIPEKVTELT 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT G+ + E R+ +F II N+ FD + + + Sbjct: 57 GITEAMVQG-GMEKEEAMRQFFEFI---GEDIIVGQNVIFDYGFLKQWAVNHNMP----- 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 S D L + R L+ L G++ NAH A D Sbjct: 108 --LERSAVDTLKLARKF-------------LPKEQKKDLESLCAYFGVKRENAHRAFDDA 152 Query: 182 YATLALVWLIREKKPKL 198 Y T + +RE+ + Sbjct: 153 YETWQIYEALRERYEEE 169 >gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] Length = 1508 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 69/198 (34%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D I + + KP +P Sbjct: 2 YLIFDTETTGLPRSWSAPITDTNNWPRCIQIAWQLHDEMGNLI-EHQDYLIKPEGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A+ GV E + + S T I N+ FD FYR Sbjct: 61 -DAERIHGISTELAIEQGVSLQEVLEQFNIALSK--TKFIVGQNVGFDVNIMGCEFYRA- 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 N +S + V+ + ++ P G FKL L I Sbjct: 117 ---------NISSDMVKMPVLDTCTEVTASLLKLPGGRGGR--FKLPTLTELHQYLFQIP 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FSEAHNATADVEATTRCF 183 >gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565] gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565] Length = 244 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 76/230 (33%), Gaps = 33/230 (14%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + A R + V V + + + KP D L DPEA+ Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEV-INRKLTGNHYHVYIKP--DRLVDPEAIQ 66 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + ++ + +F + +N FD + F + + Sbjct: 67 VHGITDEFLRDKP-SFSQIADEFLEFIRGAE---LIAHNAPFDVSFMDYEFSKLGLNFKT 122 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 + + D L + R ++ L L GI+ H H A Sbjct: 123 ---ADICTITDTLAMARDLFPG--------------KRNNLDVLCDRYGIDNSHRTLHGA 165 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRN-KNQLRKLIDIQNMTPLVHV 226 D + L+ + KL N NQ + +++ P + V Sbjct: 166 LLDAEILADVYLLMTGGQTKLNLATESNENENNQDTSIRRLESNRPAIKV 215 >gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 242 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + DPEA+ Sbjct: 11 VILDTETTGMNQGSGAIYLGHRIIEIGCVEV-VNRRLTGRYYHQY--INPGQTIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ ++ + ++ F + I +N FD + + F + Sbjct: 68 VHGITDERVSKEPRFH-QVAQDFINFI---DGAEIVAHNANFDVSFMDHEF--SLLQPRG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L + + ++ + L L G++ H A Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKN--------------NLDALCKRYGVDTSRREYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188 >gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] Length = 240 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 54/201 (26%), Gaps = 17/201 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D E G D VR+ FF +A I G+T Sbjct: 43 FVVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGE--SFFSLVRPSRDVPRDASLIHGLT 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + + F II +++ D + R + Sbjct: 101 DAALADAP----ETAETLAAFLDFLGPAIIVGHHVELDMAFINAASRR---------YFG 147 Query: 125 GNSRWDLLDVMR--AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G +D +R Y Q D F L L G+ AHDA D Y Sbjct: 148 GELAAPCIDTLRLALTYEEKRQMGQGGQGDFERLEFDLASLCRRYGLPPFAAHDALGDAY 207 Query: 183 ATLALVWLIREKKPKLFEYLY 203 L + K + Sbjct: 208 GAAYLFLYLARKSARGRPLTL 228 >gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 249 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 12/187 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + D V +Q + + + + P + E+V I GIT Sbjct: 59 FVALDFETTGMNPDQDAIISIGLVPFTQQRIQCKGSAHWIVNPN--RPLNEESVVIHGIT 116 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E ++ + I+ + + + + + R Sbjct: 117 HSDLEQAPDLEV-VLDQVLDALA---GKIVVVHYKQIEREFLDRALRARLGEGIR----- 167 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D LD+ AI + G R S +L G+ H A D AT Sbjct: 168 -FPVVDTLDIEAAIQHRACQGWFNRLRGKKPDSVRLGRARERYGLPAYQPHHALTDALAT 226 Query: 185 LALVWLI 191 L+ Sbjct: 227 AELLQAQ 233 >gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419] gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae WSM419] Length = 308 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 81/282 (28%), Gaps = 32/282 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G + D + V D + +++ PE +TGI Sbjct: 56 LILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVPPEITRLTGI 115 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L + + +I +N FD + Sbjct: 116 TDEMVLGQKIDLHRLRAVVE------PADLIIAHNAGFDRPFCEAFSPI----------- 158 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R +A S I WP+R T KL L G H H A D +A Sbjct: 159 ----------FARKAWACSVSEIDWPARGFEGT--KLGYLIGQAGYFHEG-HRAVDDCFA 205 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 L ++ R + + ++ +L + + G S+ + P Sbjct: 206 LLEVLAQGRAEVERSPFAELYGASQRSRIRLFAENSPFDMKEHLKARGYRWSDGSDGRPK 265 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK 285 +W + + L + R T+ D K Sbjct: 266 SWWIEIAEEALDDELHYLRSEIYRWNEADPPIRRLTAFDRFK 307 >gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 27/185 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + GV + ++ T + P EA + GI+ Sbjct: 4 IIFDTETTGLDSRDDRVIELGGVELVNRF-PTGRTFHHYINPQ-GRAIHVEAQAVHGISA 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 F+ + ++ + + +N FD + F R + + Sbjct: 62 ADLAGKPT----FAEIVQEWLDFTDGAKLVAHNATFDVGFLNVEFGRLGHPVI-----DN 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 D L + R + P+ L L GI++ H A D Sbjct: 113 GVVVDTLALARRKHPMGPN--------------SLDALCRRYGIDNTKRTKHGALLDSEL 158 Query: 184 TLALV 188 + Sbjct: 159 LAEVY 163 >gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15] Length = 242 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D V ++ + +P ++ I GIT Sbjct: 52 FVALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPK--LPLHQTSITIHGIT 109 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + F+ N I + R+F+D Sbjct: 110 HSDIDQAP----DLNDILKDLFACLNGRIPVVH---------YRNIERSFFDVALQWRLG 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181 R+ L+D M PD +W S +L D L G+ H AH+A D Sbjct: 157 EGIRFPLIDTMAIEAHLHPDRNPSRWQQLLGKKPVSIRLADSRLRYGLPHYAAHNALIDA 216 Query: 182 YATLALVWLIREKK 195 AT L+ Sbjct: 217 VATAELLQAQVLHH 230 >gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319] gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319] Length = 283 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 79/268 (29%), Gaps = 24/268 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ DR Q + ++V + E E FF + Sbjct: 5 LTKPLIVFDLETTGLDLVADRIIQISYIKVYADGK--EERENFF--INPGKHIPTIVTEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + ++ + F+ G+N+ RFD F R D Sbjct: 61 TGISDEDVADAP-TFKQKAKELADKFA--GCDFAGFNSNRFDVPMLAEEFLRAGIDFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK------------LQDLALANG 168 +++ + R A + ++ + + ++A+ Sbjct: 118 KCRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFVAHRADQDTEATWRVLQGEVAMYAP 177 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 D+ + D ++K+ L Sbjct: 178 GNQEEERALNNDMDELAEFSRMNDFVDFAGRIVWEDMKDKDGKTLLDATGKARK----HE 233 Query: 229 MFGASRSNTALIA-PVAWHPRYKDSVIG 255 +F + +A + P Y ++ Sbjct: 234 VFNFGKYKGWDVAEVLHKDPGYYSWMLA 261 >gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823] gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823] Length = 1463 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 75/237 (31%), Gaps = 30/237 (12%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 F+I+D ET G + R Q A D I + + +P +P Sbjct: 2 FLIFDTETTGLPRDWNAPLTDLDNWPRAIQIAWQLHDELGNLI-EAKDYLIRPDGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + AL G + ++ + NI FD F R Sbjct: 61 -DAERIHGISTELALEQGQDLEDVIAEFNEVLRKSQ--FVVGQNIGFDLNIMGAEFLRT- 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + + D + + + + P G FKL L + Sbjct: 117 ---QVATNMHDLPVLDTCTEV------TANLCKIPGGRGGK--FKLPTLTELHSFLFNVP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 AH+A ADV AT + + ++ E L K+ + + P+ Sbjct: 166 FGEAHNATADVEATTRCFFELVRREVFTAEELKVELEFFNRFKIANPDFIQPIGLTH 222 >gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 855 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 25/186 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G ++ D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSL-----EK 600 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 601 ANFKTYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALV 188 AT ++ Sbjct: 648 ATKDVL 653 >gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 238 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 26/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + KP + D A+ + GIT Sbjct: 4 IVLDTETTGLEPSQGHRIIEIGCVEL-INRKLTGRHYHQYIKP--EREIDEGAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V + + F + + +N FD + + F N ++ Sbjct: 61 NEFLADKPV-FKDIADEFMAFV---DGAELVIHNAPFDVGFLNHEF--NLLGRGSTVIND 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 S D L + R + + L L G ++ + H A D Sbjct: 115 RCSILDTLALARNKHPGQKN--------------NLDALCKRYGADNSARDLHGALLDAE 160 Query: 183 ATLALVWLIREKKPK 197 + L+ + Sbjct: 161 ILADVYLLMTGGQTN 175 >gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] Length = 247 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 31/189 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFIT 61 F I D ET G + L +P + + + + + F FC IT Sbjct: 69 QKFCIVDIETNGHNPFLHQPIEIGAILY-QNGMVQKEFQSFVFC-----EEIPEYITKIT 122 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + + + F C+ +N+ FD + N + + Sbjct: 123 NITTEMLRNAPPIH-QVLESFRIFL---GDCVFVAHNVGFDYGFLSNSLHHYGFGYLYNP 178 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 S I+ + A + L+ L I H H A D Sbjct: 179 --------------------SLCTIKLAQKTFQAPRYSLEFLNGFLNINHSPLHRALEDA 218 Query: 182 YATLALVWL 190 L + Sbjct: 219 KVALEVFKT 227 >gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 283 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 26/195 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D ET G +++ DR + VRV E EV + ++ I G Sbjct: 20 KPIAFFDLETTGVNISTDRIIEICIVRVSP---PDEKVEVKTFRVNPGMPIPDQSSAIHG 76 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + E + +I+QF + + G+N+IRFD F+R + Sbjct: 77 IYDKDVADKP-TFTEIAHQINQFMKDCD--LGGFNSIRFDIPLLIEEFFRAGIE------ 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ + S ++K + NAH A+AD Sbjct: 128 ---------FDITKRKLVDSQRIFHLMEPRTLGAAYKF-----YCNKDLENAHSAEADTL 173 Query: 183 ATLALVWLIREKKPK 197 AT ++ E+ Sbjct: 174 ATYYILKAQIERYAD 188 >gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 249 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK------PADDYLPDPEAV 58 FV D ET G D D+ V + + +C+ L + E+V Sbjct: 59 FVALDLETTGLDSQQDQIISVGLVPF--------TLDRIYCRQSAHWVVNPHRLLNEESV 110 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + + + Q I+ + + + + + Sbjct: 111 VIHGITDSEVQDAP----DLRVILEQVLQALAGKIVVVHYKNIERGFLNQALLKRLGEGI 166 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 D LD+ AI G + S +L G+ H A Sbjct: 167 E------FPVVDTLDLEAAIQYRQCRGFFNRLKGKKPGSVRLGHARERYGLPTYQPHHAL 220 Query: 179 ADVYATLALVWLIREKK 195 D A+ L+ Sbjct: 221 TDALASAELLQAQLAYY 237 >gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] Length = 855 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G + D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLT-PKKFV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R + + Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVAFDISILNSELERLSLEKASFK- 604 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 605 ----TYYDTLDIARRFY-------------PNLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 AT ++ + ++K K ++K I Sbjct: 648 ATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYK 684 >gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C] Length = 235 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 71/227 (31%), Gaps = 37/227 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G + DR + + E + F + E V I Sbjct: 4 IIFDTETTGLNKESDRIIEIGCI------EMVNRYLTGRRFHVYLNPQGVVIPDEVVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + + + F + I +N FD + R Sbjct: 58 GLTNERLKDEKK-FDDIVDALLDFI---DGATIVAHNANFDIGFLNAELERVNKPLI--- 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 N ++ D L + R + P+ L L GI++ + H A Sbjct: 111 --NSDNVIDTLSIARRRFPMGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 D + + K +F +D + + D +N P + + Sbjct: 155 DAEILADVYIELIGGKQGIF--SFDNYESCDVMNVQDNKNAFPTIKI 199 >gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] Length = 228 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 55/220 (25%), Gaps = 29/220 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + EA + G+ Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGNTYHQYINPERSMPAEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + F + +N FD + W Sbjct: 61 DDFLRDKPK-FAQIGQDFLDFIGDSK---LVIHNAAFDIKFLNAELKWMGLPQIPWEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L GI++ + H A D Sbjct: 116 ----LDTLAIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + + + F K P Sbjct: 158 ILADVYLELIGGRQPDFGLSTKPEKKEGDTTPDWTPKPRP 197 >gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126] gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126] Length = 1433 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 22/194 (11%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++IYD ET G + R Q A E +++ KP +P Sbjct: 2 YLIYDTETTGLPKNYNAPLSDADNWPRCVQIAWQLHGANGELLDAQN-HIIKPEGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A + GI+ ++A ++G E T ++ +NI FD R Sbjct: 61 -NAEKVHGISTERAQKEGKPLIEVLEAFKTILEK--TDVVVGHNISFDISIMGAEMLRKE 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + I +WP+ + G + +A Sbjct: 118 LSETVLTEKPIIDTKEAGTDFCKIPGGRGGKYKWPTLTELHKKL--------FGQDFADA 169 Query: 175 HDAKADVYATLALV 188 HDA DV AT Sbjct: 170 HDAAYDVDATAKCF 183 >gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] Length = 945 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 28/204 (13%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 F + D ET G D++ D R QF+ V + I++ V + Sbjct: 4 KTTFAVVDIETTGTDISADNRTIQFSCCLVSNN-KIIKTFVT---DINPQREVPNRIVQL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT ++ + + + +++ N + +N+ FD + + F R Y + Sbjct: 60 TGITNERLQKA-KTFDQVAAQLYSLL---NNTVFVAHNVNFDFPFLNSEFQRVGYPELQ- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + +D + P +S++LQDL+ IEH + H A +D Sbjct: 115 --------IEAIDTVTLSQILLPTL----------SSYRLQDLSSYFNIEHDHPHTADSD 156 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 AT L+ ++ + L + + Sbjct: 157 ALATAKLLLILLRQIKMLPKMTLE 180 >gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 855 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G + D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLT-PKKSV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R + + Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVAFDISILNSELERLSLEKASFK- 604 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 AT ++ + ++K K ++K I Sbjct: 648 ATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYK 684 >gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 232 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 53/195 (27%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D A R + A V + + + D D A+ + GIT Sbjct: 4 IILDTETTGLDPAQGHRIIEVAAVEM-VNRRLTGNHLHRYV--NPDRDIDAGAMQVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + +R F I +N FD + Sbjct: 61 PEFLQDKPR-FGDIAREFVDFIDGAELII---HNAPFDVGFLNMEL-------------- 102 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 R + ++ D + L L +++ H A D Sbjct: 103 ---RLLGMPLLATCCGGVTDTLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCE 159 Query: 183 ATLALVWLIREKKPK 197 A+ + + Sbjct: 160 LLAAVYLALTRGQES 174 >gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] Length = 256 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F D EA+ + Sbjct: 10 VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDAEAMQV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + AE + +F I +N FD + + F +F + Sbjct: 67 HGITNEMLADKPA-FAEIADEFIEFIKGAELII---HNAPFDVGFIDHEF--SFLPNPPE 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 121 KVAQMCTVTDSLQLARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKK 195 D + ++ + Sbjct: 167 LDAEILADVFLMMTGGQ 183 >gi|239616641|ref|YP_002939963.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] gi|239505472|gb|ACR78959.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] Length = 185 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 54/192 (28%), Gaps = 27/192 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +V+ D ET G DR + A + + R ++ F Sbjct: 1 MNKVYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVD--LAFHSLVNPQIRIPAYISG 58 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I G+ + + + ++ R ++ II ++I D + Sbjct: 59 IHGLKNEDVTSEPTI-SDVFPRFKEYL---GNAIIVGHSIEVDMKFFDIACKEIGTFPLS 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D ++ S+ L +LA I+ H A Sbjct: 115 NQY--------------------IDTLKIAKDLFKEGSYSLAELAKRLKIKDAPTHRALD 154 Query: 180 DVYATLALVWLI 191 D T + + Sbjct: 155 DARVTGKVFLAM 166 >gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC BAA-894] gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFMV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + V F + F + +N FD + F + Sbjct: 66 HGISDEFLMNKPV----FGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILADVYLAMTGGQTSI 185 >gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] Length = 239 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 26/199 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G +V+ R + V + + +P D D A+ + Sbjct: 1 MKRQVVLDTETTGLEVSQGHRIIEIGCVEL-INRRLTGRHFHQYIQPERD--IDAGALAV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP+ + F I +N FD + R D Sbjct: 58 HGITPEFLADKP-TFDRIANDFVTFIDGAELII---HNAPFDVGFIDAELARFNRDHPST 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S S D L + R+ + + L L +++ + H A Sbjct: 114 SAL--CSIVDTLTLARSKHPGQRN--------------SLDALCQRYHVDNASRTLHGAL 157 Query: 179 ADVYATLALVWLIREKKPK 197 D + ++ + Sbjct: 158 LDAEILADVFLIMTGGQTS 176 >gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium roseum DSM 43021] gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein [Streptosporangium roseum DSM 43021] Length = 407 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 28/173 (16%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + DR + V +D E P+ I GI Sbjct: 10 YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATL---VNPGRDLGPQ--HIHGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + + + + ++ +N+ FD + + F R D+ Sbjct: 65 TAADIRHAPA-FGEIAGAVAERL---DGRVVAAHNLPFDAGFLSHEFGRLGLDTPL---- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + W ++ L G+ H+ Sbjct: 117 --------------DHTAGVCTMAWSAQFLPGAPRSLAACCARAGVSLNGHHE 155 >gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ] Length = 438 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 27/201 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F ++D ET G + D+ + V++ + +E I+ + +T I Sbjct: 13 FCVFDLETTGGNHKSDKIIEIGLVKI-KNFEVIDQKNYL---IQPEIKIPEFIQKLTSIK 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V+E + I +F I+ +N FD + ++ R + Sbjct: 69 EEDVKDSPVIE-DVIDEILKFM---GDSILVAHNTSFDVPFFNSVLKRLGKPQLKNKS-- 122 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + L ++ GI+H AH A D AT Sbjct: 123 -----------------LCTNLMTKYLIPNLMNSNLNYMSKIFGIKHKKAHRALDDALAT 165 Query: 185 LALVWLIREKKPKLFEYLYDY 205 L+ + + ++ Sbjct: 166 AELLLIYLKIYIDKGITKINH 186 >gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] Length = 1555 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 68/412 (16%), Positives = 122/412 (29%), Gaps = 46/412 (11%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D IE+ + + KP +P Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQD-YIIKPEGYDIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A I GIT + A +G E + ++ +N+ FD FYR Sbjct: 61 -NAARIHGITTKIANEEGRDLQEILEEFSKVLEK--VRVVSGHNVEFDYNIVGAEFYRKN 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D M F G R +L + G + A Sbjct: 118 LKDNLQEK-------PKADTMILGADFCQLGGGRGGRFKPPKLEELYE--KLYGSKFDEA 168 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H+A ADV AT + + E L ++ K + + P V A Sbjct: 169 HNAAADVNATARAFFEMVRIGVVPAETLKISEDQLAYFKSLYPDPIKPFNIVIRRQVAD- 227 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 +H + K G D+ + + D+ + L + + IK+ Sbjct: 228 ----------FHNKKKQQDFGSIDEIDLGKYFNFDNHSVFSTLTATSS-----INDLIKK 272 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 P + +D ++ + N ++ + + + + Sbjct: 273 ASDENFPAVGMVDLGNMMGAFKFVSAVE--GANADRAKKHKEYLAKKQEAEENGTEFNEE 330 Query: 355 DVDSQLYDG----FFADVDRQIMDRILRTAPEQLSTLNLPFSD-RRLPELFF 401 + S+ F DR + + P++ + + L D L Sbjct: 331 EPVSEPLIPVVGCEFYISDRYEQKQFTKDDPDRRTQVVLLAKDFNGYKNLAK 382 >gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 326 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 31/222 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D ET G D + + +R + E F +LP T Sbjct: 31 PKSYVVIDLETTGFDPKCNEILEIVALRYENN----EKIAEFSKLIKVSFLPS-FITEFT 85 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + ++ + F + I+ +N FD NF Sbjct: 86 GINEDMIKNCNDI-SQTLKEFDDFLKSGD--ILVAHNAHFDI---------NFLYDNFMC 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + N +D +D MR + + +L+DL I + NAH + D Sbjct: 134 YLNKPFSFDFVDTMRLSKLINQELAH----------HRLKDLCNQYNICYENAHRGEKDC 183 Query: 182 YATLALV----WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 T + + + L + K Q+R+ Sbjct: 184 ELTHLCLMELKKTAFDNSLIENDVLVNNGLKTQIRQTQTKAK 225 >gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316] gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316] Length = 604 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 69/228 (30%), Gaps = 29/228 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ +D ET G + DR + V + ++S E + + Sbjct: 50 KNRFIAFDIETPGLNSQQDRIVEVGAVLF-ENGKVVDSYESL---VNAKVNISADVTRLN 105 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 IT + E + + F + +N +FD + N R Sbjct: 106 NITNRMIKNAP-SENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLG----- 159 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ D L + R G ++K +A +++ N+H AK+ Sbjct: 160 --YNGEIKYLDTLSLSR-------------KNVKGLRNYKQNTVAEYFNLQNKNSHRAKS 204 Query: 180 DVYAT--LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 D + + K + NK +L + ++ Sbjct: 205 DAIICGNILTKLFFIIENQKSRKSFSSKNNKISPEELEVCAVIQNIIF 252 >gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 282 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 30/201 (14%) Query: 5 FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D E+ G DV R + A +R+ + E I+ E DP A + GI Sbjct: 26 FVLFDMESTGLDVQIGHRICEMAAMRI-QGREIIDRCEFL---VNPQREIDPAAFAVNGI 81 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E ++++ F ++ +N FD + + R Sbjct: 82 SAEMVANAP-SFGEIWPKVNKLFHE---AVLVAHNAYFDIGFLTSELSRIDLPPLET--- 134 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R R A + L LA G E +H A +DV A Sbjct: 135 ---PVIDTLALAR--------------RYITARRYNLTSLATNLG-EKAPSHRAMSDVVA 176 Query: 184 TLALVWLIREKKPKLFEYLYD 204 + + + + + Sbjct: 177 LRPVFEHLLDILYRKGVHTLA 197 >gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] Length = 240 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V +I + F + EA + G++ Sbjct: 4 IVLDTETTGLEANKGDRVVEIGCV---EMVNRILTGNTFHVYINPERDMPAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +F + + +N FD + R + Sbjct: 61 SEFLSDKPK-FAEVADAFLEFIA---GDTLVIHNAAFDIGFLNAELARLSREPIAR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D + + R + + S KL DL GI+ H A D Sbjct: 113 -DRVVDTVALARRKHPGA--------------SAKLDDLMKRYGIDASRRVKHGALLDSE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 395 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 47/188 (25%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V V + +TGIT Sbjct: 27 IVFVDLETTGGSTAEHRITEVGVVEVGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 81 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 EA + + F N + +N FD + R F R Sbjct: 82 NAMVRGAPTFEA-IAPAL---FERLNGKLFVAHNASFDRGFLRGEFRRAGL--------- 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L + + + H A AD Sbjct: 129 -AFDPDVLCTVRLSRALF----------PAEKRHGLDALVERHTLVPSDRHRALADADLI 177 Query: 185 LALVWLIR 192 + Sbjct: 178 WQFWQRLH 185 >gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 383 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 46/193 (23%), Gaps = 29/193 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V D ET G R + V V + + Sbjct: 11 LAEPIVFVDLETTGGSTNEHRITEVGVVEVGPTG--VTRWSSL---VDPQQPIPSFIQQL 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + F+ N + +N FD + R F R Sbjct: 66 TGITNAMVRGAPT--FDAIA--PELFARLNGKLFVAHNASFDRGFLRGEFRRVGISFDP- 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+L +R A L L + + + H A AD Sbjct: 121 ---------DVLCTVRLSRALF----------PSEKRHGLDALVERHSLVPSDRHRALAD 161 Query: 181 VYATLALVWLIRE 193 + Sbjct: 162 ADLIWQFWQRLHT 174 >gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis TXDOH] gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4] Length = 241 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRIIEVGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ ++ F I +N FD + F ++ Sbjct: 61 TEFLRDKPK-FADIVDQLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPAFSDHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis E264] Length = 241 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRIIEVGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ ++ F I +N FD + F ++ Sbjct: 61 TEFLRDKPK-FADIVDQLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPAFSDHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 470 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + + N Sbjct: 183 YLEYSLSEHGVEEWIRQCFRLMNPK 207 >gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 470 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + + N Sbjct: 183 YLEYSLSEHGVEEWIRQCFRLMNPK 207 >gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha275] Length = 312 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + + N Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198 >gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha153] Length = 461 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + + N Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198 >gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 444 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITG 62 HFV D ET + Q VRV + + + C+P D + I G Sbjct: 100 HFVGVDVET--ANADWGSICQIGVVRVTDGMQV--DSHEWLCRPPAGIDHFDEGNIRIHG 155 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP +F+ + + ++ +N +FD + W Sbjct: 156 ITPDMVTDAP----DFAAVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWK- 210 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 F+ + G TS +L +A G+E N HDA AD Sbjct: 211 ------------------FACSLAASRAAKLGITSHRLPVVAQHLGVELDNHHDAVADAR 252 Query: 183 ATLALV 188 A + Sbjct: 253 ACAGIF 258 >gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 244 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 LILDTETTGLNARGGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F + I +N FD + F + Sbjct: 61 TEFLSDKPK-FAEIIDQFRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TH 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 114 CGEIIDTLAQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 201 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 58/186 (31%), Gaps = 16/186 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G + A + D + T V P EAV I GIT Sbjct: 23 LILDTETTGLG-DDAEVVEIAVI--DCAGNVLLDTLVRPSGPVP-----AEAVAIHGITD 74 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +E R ++ Y + FD R + Sbjct: 75 AMLADAP-TWSEIHDRFCCLVE--GRQVVIY-SREFDARLISQTARRYGLPAP----KGF 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + D + A++A++ +W KL A G+ NAH A D TL Sbjct: 127 DQVLDDDRIHCAMHAYAAFRGEWSEEKGRYRWQKLSAAAEQQGVTVGNAHRALGDCVMTL 186 Query: 186 ALVWLI 191 ++ + Sbjct: 187 GIIRAM 192 >gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] Length = 236 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 56/200 (28%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D A R + A V + + DPEA+ + G+T Sbjct: 4 IVLDTETTGLDPAQGHRVVELACVEM-ENRSLTGRHLHLY--LNPGRDSDPEALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E E ++++ + I +N FD + R + Sbjct: 61 TEFLSGHPRFE-EVAQQLVDYVKDAEVII---HNAAFDVKFLNAELTRAGLPVF---NSL 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L R ++ L L GI H H A D Sbjct: 114 CGKITDSLLHARELHPG--------------KRNSLDALCERYGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYL 202 + + + L Sbjct: 160 LLADVWLAMTRGQDALLMDF 179 >gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1] gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] Length = 236 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 22/186 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G++ R + VD I E EA + G+T +K Sbjct: 12 FDLETTGKNSRSARIVTASITVVDAHGGLIAEHEWLA---DPGVEIPLEASEVHGVTTEK 68 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G AE +R + + + N +D R Sbjct: 69 ARAEGRPAAEVTREVAGVLQGLFDDGTPVIAFNASYDFTVLAAESARYGVPQL------- 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 SR+ +LD P + L L G++ NAH + AD ATL Sbjct: 122 -SRFPVLD---------PYVMNKQMDRYRKGKRTLTALCEEYGVDLTNAHTSAADALATL 171 Query: 186 ALVWLI 191 ++ + Sbjct: 172 RVLDAM 177 >gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 595 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G +R + V+V + F D E +T Sbjct: 521 DTYVVFDIETTGFSPEKNRIIEIGAVKV-VNGVITDRFSTF---VNPDVPIPFEIEQLTS 576 Query: 63 ITPQKALRDGVV 74 I L + Sbjct: 577 INDNMVLSYPKI 588 >gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366] gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366] Length = 456 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 76/251 (30%), Gaps = 29/251 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + + + + + V E +E+ E +TGI+ Sbjct: 3 YAVVDIETTGGFASGNGITEIS-ILVHDGREVVEAYETL---INPGQEIPAYIETLTGIS 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + I+ I +N+ FD + ++ + YD Sbjct: 59 NEMVVTAPL-FGGVAAEIYAMLHDK---IFVAHNVNFDFSFIKHHLSLSGYD-------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R L +R G +S+ L L A I + H A D AT Sbjct: 107 --LRCKKLCTVRLSRKLF----------PGYSSYSLGKLCNALNIAIHDRHRAGGDARAT 154 Query: 185 LALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 L+ L+ + + + +K Q+ + + R ++ V Sbjct: 155 AELLTLLLKTDLEGIIVQTLSRASKEQVLPPHLSRTQIDKLPQVPGVYYFRDQKGIVVYV 214 Query: 244 AWHPRYKDSVI 254 V Sbjct: 215 GKAKNILKRVC 225 >gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1] gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1] Length = 222 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 67/210 (31%), Gaps = 27/210 (12%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F ++D ET G VA DR + V+V + T + P D P V +T I Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRDL--PPVIVELTNI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +K E ++ QF + + I FD + ++ R + ++ Sbjct: 87 TEEKVKHAPTAI-EALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKPTF- 144 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D LD++ I L+ A A G H A D Sbjct: 145 -----IDTLDLIGFIAPSYDMRD-------------LERYAQAFGTRMYERHSAIGDALT 186 Query: 184 TLALV----WLIREKKPKLFEYLYDYRNKN 209 T L R + + + L + Sbjct: 187 TAYLFVELLQQFRLRGYRTWGELLRATDSQ 216 >gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] Length = 653 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 28/182 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A + + P P V I G+T ++ Sbjct: 22 VDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTL---VNPGCDPGP--VHIHGLTAER 76 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 E + + RI ++ +N +FD + + F R Sbjct: 77 LRDAPAFE-QVAGRIGALLQDR---VMVAHNAQFDYDFLAHEFARARLCLPVNQ------ 126 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + + A L LA G+ AHDA D + Sbjct: 127 RLCTLALNRRV-------------EPPAADLSLASLAAHYGVPQTRAHDALDDTRVLAGI 173 Query: 188 VW 189 Sbjct: 174 FR 175 >gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 56/206 (27%), Gaps = 37/206 (17%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53 N V+ D ET G + R + V E I+ F D Sbjct: 10 NRIVVLDTETTGMNFEGGPHYEGHRIIEIGAV------EIIDRKLTGRHFHVYLKPDREI 63 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 P+A+ + GIT + E + F + +N FD + F + Sbjct: 64 QPQAIEVHGITDAFLVDKPQ-YKEVHQEFLDFIKGAE---LVAHNASFDVGFMDYEFAKV 119 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--H 171 + D L + + I+ L L GI+ H Sbjct: 120 NPAIGKTEQY--CKITDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSH 163 Query: 172 VNAHDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 164 RTLHGALLDAEILADVYLLMTGGQTS 189 >gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] Length = 238 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 65/213 (30%), Gaps = 19/213 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D A DR A V + +++ EA I GIT + Sbjct: 11 FDTETTGVDTAHDRVVTAALVLRTGEVTTVDTWL-----IDPGVPIPDEAARIHGITTEY 65 Query: 68 ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G + I + N FD R+ + G Sbjct: 66 AVEHGANPVDALSVIADRIVDHMSQGWALVAFNATFDVCIVEAELARHGLPTLA--QRLG 123 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 ++D + A KL +L G + H A ADV AT Sbjct: 124 GPVAPVIDPLVLDRAV---------DRYRRGQRKLANLCSEYGVEDTGTLHTADADVVAT 174 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 L ++ + + P+L D + Q + Sbjct: 175 LDVLERMVGRHPRLAAMTLDELHAFQAQAHTQW 207 >gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 326 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPKKPIPQFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVVDAPV-FAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + + N Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198 >gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102] gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102] Length = 256 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 29/194 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G D DR + + D + + + F + A I I Sbjct: 26 TLLIIDTETTGLDPEKDRCLEVGAILFDVSTRSVLAQQSFLLPVETN-----AAEPINRI 80 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P R R + + + ++ +N FD + Sbjct: 81 -PASVTRLPQPWTGALRWFDELLTASD--VLVAHNAVFDRQWFGR--------------- 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + + S + ++WP+ + ++DLALA G+ +AH A D Sbjct: 123 ------DPLPAVSHPWLCSMEDLRWPAERQLRSRPSVRDLALAYGVPVWSAHRALTDCNY 176 Query: 184 TLALVWLIREKKPK 197 + + + Sbjct: 177 LAEVFARCDDLETM 190 >gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] Length = 221 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 23/200 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++YD ET G D + + V+ ++S V ITGI Sbjct: 39 NYIMYDLETTGL-TNKDHIIEIGAIYVEDN-TIVDSFSALC---NPGIFITQRIVEITGI 93 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T + E + ++ ++ + T + +G N FD+ + R + Sbjct: 94 TNKMLSDKP-PEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLNFPF--- 149 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + + S + DL GIE+ AH A DV Sbjct: 150 ---ERSLDTLKMAINMKL---------KEKGLVASNQQSDLGKLYGIEY-VAHRAINDVE 196 Query: 183 ATLALVWLIREKKPKLFEYL 202 A + +++ L Sbjct: 197 ALYQIFEHLKKDYNGDLPIL 216 >gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 382 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G + R + V V + +TGIT Sbjct: 15 IVFVDLETTGGSTSEHRITEVGVVEVGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E+ + + F N + +N FD + R+ F R Sbjct: 70 NDMVRGAPTFES-IAPAL---FERLNGKLFVAHNASFDRGFLRSEFRRAGI--------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A G L L + + + H A AD Sbjct: 117 -AFDPDVLCTVRLSRALF----------PGEKRHGLDALVERHALVPSDRHRALADADLI 165 Query: 185 LALVWLIRE 193 + Sbjct: 166 WQFWQRLPT 174 >gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] Length = 270 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 26/284 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D ET G ++A DR ++ E I + E+ I G Sbjct: 9 KPLAFFDLETTGINIAKDRIIDICIIKALPGGEVI----TKNQRVHPGMPIPLESSLIHG 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I +R + QF + G+N RFD F R D Sbjct: 65 IYDDDVQDAP-PFKTVARTLAQFLD--GCDLAGFNCNRFDVPLLVEEFLRANVD------ 115 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKADV 181 +D+ + ++ + + +DL A+G E A D Sbjct: 116 ------FDMKNRRLVDAQRIFHLMEPRNLSAAYKFYCNKDLVGAHGAEADTIATLEVLDA 169 Query: 182 Y---ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 + + + + + M +F + A Sbjct: 170 QVQRYMGMVAKSDSGADVVFENDVDMLHSLTANKNIDLAGRMVINEKGEEVFNFGKHKGA 229 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD 282 + V + + S L GD + ++ R+F++ Sbjct: 230 PVLEVL---KKEPSFYDWILKGDFPLDTKRRLTEIRLRMFSNGK 270 >gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1486 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 72/202 (35%), Gaps = 26/202 (12%) Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + P Q A D+ I + F P +P Sbjct: 2 YLIFDTETTGLPRNYNAPISDSNNWPRAVQIAWQLHDQWGALI-EHQDFLIAPDGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A + GI+ A + GV AE ++ S + NI FD FYR Sbjct: 61 -DAEKVHGISTLLAEKQGVPIAEVFAAFNEALSKAQ--YVVGQNIGFDINIMGAEFYRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDL-ALANGIEHV 172 + S D L V+ + + + G F L +L + G+ Sbjct: 118 VE----------SPLDKLPVIDTCTEATANLCKIEGGRGGKYKFPSLTELHSFLFGVPFA 167 Query: 173 NAHDAKADVYATLALVWLIREK 194 AH+A ADV AT + + + Sbjct: 168 EAHNATADVEATARCFFELIRR 189 >gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella multiformis DSM 16608] gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella multiformis DSM 16608] Length = 284 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 79/268 (29%), Gaps = 23/268 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T VI+D E G D+ DR Q + ++ ++ E +F E + Sbjct: 5 LTKPLVIFDLEATGLDLVNDRIIQISFIKAYPDGKE-ERENIF---INPGKPIPSEVTQL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + ++ + FS G+N+ RFD F R D Sbjct: 61 TGISDEDVAEAP-TFKQKAKELADKFS--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFT 117 Query: 121 SW-----DNGNSRWDLLDVMRAIYAFSPDGI------QWPSRDDGATSFKLQDLALAN-- 167 N + + ++ A + + +D AT LQ Sbjct: 118 KSRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATWRVLQGELDMYAP 177 Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 G + D+ + + +K+ L+ P H Sbjct: 178 GRQEEPERVLNNDMDELAEFSRMNDFVDFAGRMVWKETTDKDG--NLLLDATGKPRRHEV 235 Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIG 255 FG R + P Y ++ Sbjct: 236 FNFGKYRGWNVADV-LHRDPGYYSWMLA 262 >gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 316 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 28/224 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G ++ LDR + + ++V K EV + E+ Sbjct: 5 LKRPLAFFDLETTGVNIPLDRIVEISILKVMPDGNK----EVLTRRINPGMPIPAESSMF 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E + I F + + GYN+ +FD F R D Sbjct: 61 HGIYDEDVKDLP-SFKELGQEIADFIGDAD--LAGYNSNKFDVPMLMEEFLRANVDF--- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G + D+ ++ + + + NAH A+AD Sbjct: 115 -SLEGRNFVDVQNIFHQMEQRTLK----------------AAYKFYCDQDLNNAHTAEAD 157 Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 V AT ++ + + ++E + ++K + + + T L Sbjct: 158 VTATYEVLKAQLSRYEDVVYEDKHGNKSKPVVNDVEALHEFTNL 201 >gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] Length = 239 Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + +P + + +A+ + GIT Sbjct: 4 IVLDTETTGLEPSKGHRIIEIGCVEL-ENRKLTGRHYHQYIQP--EREIEAQAMEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F + + +F + + + +N FD + N + Y+ + Sbjct: 61 NEYLKGKPT----FVQIMDEFMAFVDGAELIIHNAPFDVGFINNELAKYGDKKYQNI-TH 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + L L G+++ H A D Sbjct: 116 YCGVIDTLVMARQKHPGQKN--------------NLDALCKRYGVDNSQRDLHGALLDSE 161 Query: 183 ATLALVWLIREKKP 196 + L+ + Sbjct: 162 ILADVYLLMTGGQR 175 >gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 189 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 25/199 (12%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++ +D ET G R Q A + D KI F KP +P Sbjct: 2 YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAG-GDFIIKPEGFTIPT 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 EA I GIT ++A ++G R + + +N+ FD+ F RN Sbjct: 61 -EASRIHGITTERANQEGKPIQTVLRDFQSMINEAQ--YLVAHNMSFDEKIVGAEFLRNN 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + P G +WP + +KL + A Sbjct: 118 MPDSIAP---KRKICTMQSTTNFCAINGPYGYKWPKLSELH--YKL------FKTDFEEA 166 Query: 175 HDAKADVYATLALVWLIRE 193 H+A AD++AT W +R Sbjct: 167 HNAAADIHATARCFWELRR 185 >gi|194449117|ref|YP_002047241.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407421|gb|ACF67640.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 198 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 20/192 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ + D ET G + + D + +T V KP D EA+ I G Sbjct: 22 DNRLFIDTETTGLG-DDAEIVEICII--DSHGFILLNTLVKPTKPIPD-----EAIAIHG 73 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + + YN +D R + N S W Sbjct: 74 ITNEMVAYAPA-WTDICGAVEELIRRFG--FVIYNA-DYDLRLIRQTYALNGRPSEGAPW 129 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181 + + P + G KL D A G + AH A AD Sbjct: 130 MLAAHSVCAM-------KLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGKAHRALADC 182 Query: 182 YATLALVWLIRE 193 TL ++ + + Sbjct: 183 KMTLGVIKALAQ 194 >gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] Length = 1403 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 22/194 (11%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + + S E KP +P Sbjct: 2 YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLV-SAENMIVKPEGFTIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A + GI+ + AL +G+ E + + +I +NI FD + R Sbjct: 61 -NAEKVHGISTEIALEEGLPLNEVLEKFAVDIARSE--LIIGHNIGFDVNIMGAEYVRTT 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 DS +++ + I +WP+ + T +A Sbjct: 118 VDSKLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKL--------FSESFDDA 169 Query: 175 HDAKADVYATLALV 188 HDA DV AT Sbjct: 170 HDAAYDVLATARCY 183 >gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 211 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 49/178 (27%), Gaps = 30/178 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G A R + A V + + ++ + P Sbjct: 1 MPQPIAVIDFETTGMAPAQGARATEVAIVLI-EGGQVVDRFQSLM---RTGAWIPPFITR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT E E R +F + + +N FD + ++ Sbjct: 57 LTGITNAMVAAAPPAE-EVMRDAARFV---GSAPMVAHNAAFDSKFWQSELALAGE---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 A F+ + A S L L G+ AH Sbjct: 109 ----------------AAPQPFACTVLLSRRIYPEAPSHSLSRLTAHLGLPVAERAHR 150 >gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 469 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 31 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 85 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 86 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 131 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 132 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 181 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 182 YLEYSLSEHGVEAWIRQCFRLMNPK 206 >gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] Length = 469 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 31 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 85 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 86 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 131 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 132 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 181 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 182 YLEYSLSEHGVEAWIRQCFRLMNPK 206 >gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] Length = 469 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 31 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 85 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 86 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 131 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 132 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 181 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 182 YLEYSLSEHGVEAWIRQCFRLMNPK 206 >gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] Length = 470 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594] Length = 461 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSEHGVEAWIRQCFRLMNPK 198 >gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha710] Length = 461 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSEHGVEAWIRQCFRLMNPK 198 >gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013] Length = 470 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens DM4] gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens DM4] Length = 236 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V +++ E F A + GI+ Sbjct: 5 IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+ + F + +N FD + F R Sbjct: 62 DAMLADKPV----FAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + + L L G++ H A D Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161 Query: 183 ATLALV 188 + Sbjct: 162 ILAEVY 167 >gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 236 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V +++ E F A + GI+ Sbjct: 5 IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+ + F + +N FD + F R Sbjct: 62 DAMLADKPV----FAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + + L L G++ H A D Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161 Query: 183 ATLALV 188 + Sbjct: 162 ILAEVY 167 >gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] Length = 241 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V +++ E F A + GI+ Sbjct: 10 IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+ + F + +N FD + F R Sbjct: 67 DAMLADKPV----FAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + + L L G++ H A D Sbjct: 121 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 166 Query: 183 ATLALV 188 + Sbjct: 167 ILAEVY 172 >gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Neisseria meningitidis H44/76] gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] Length = 470 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] Length = 470 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] Length = 235 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 28/200 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G D R + V ++ + F D + EA Sbjct: 1 MMRQ-IILDTETTGIDPKQGHRIIEIGCV---EMLDRKLTKNHFHVYINPDRQVEEEAFQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ + + F + + +N FD + + F + Sbjct: 57 VHGISDEFLADKPRFH----QVAQDFLNYIQGAELVIHNAPFDVGFIDHEFAKLGNFP-- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 + S +D L R+ + + L L GI+ H H A Sbjct: 111 -KVADICSVFDTLAFARSKHPGQKN--------------NLDALCKRYGIDNSHRELHGA 155 Query: 178 KADVYATLALVWLIREKKPK 197 D + L+ + Sbjct: 156 LLDSEILADVYLLMTGGQTS 175 >gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] Length = 232 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 21/189 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FVI+D ET G D+ DR V + I+ + F + + +AV + GI Sbjct: 45 FVIFDTETSGFDLVKDRILSIGAV--SMKGSTIDIADSFEVLLRQEAIGGKDAVSVHGIL 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G+ E E R + N I+ ++ +R + R Sbjct: 103 KRDLT-QGMEEGEAVCRFLDYL--GNGVIVAHHADFDIAMVNRVLSQRYG---------- 149 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182 LL+ +F+ + P + S ++L +L GI + H + D Y Sbjct: 150 ----IKLLNEALDTASFAKRLEKGPYYNLAHKSGEYRLDNLCARYGICLYDRHTSAGDAY 205 Query: 183 ATLALVWLI 191 T L + Sbjct: 206 LTAQLFQRL 214 >gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] Length = 252 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 27/189 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G + + + A +RV+ E F P +TGI+ Sbjct: 78 LVVLDLETTGLSPSENEIIEIALMRVEP-----GRVERFARLVNPGSPIPPFITRLTGIS 132 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ N FD + R R + Sbjct: 133 SADVADAP----DVYTALEEALPYLEGAVLVIQNAPFDLGFLRPRACRLGVKIHN----- 183 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +++D ++ P + A IE H A DV AT Sbjct: 184 -----EVIDTVQWARRALPRMRRRGLDHLIR--------AFEVSIETGARHRALGDVEAT 230 Query: 185 LALVWLIRE 193 + + Sbjct: 231 WTVAREMYY 239 >gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] Length = 235 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + DR + V V+R+ + F + + A+ + G+ Sbjct: 4 IVLDTETTGLNPRSGDRIIEIGCVELVNRRL----TGNNFHHYINPERDSEEGALAVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE + + S + I +N FD + R S++ Sbjct: 60 TTEFLSDKPK-FAEIAAEFRDYISGADVII---HNAPFDIGFLDAELKRVNTPSFKEHV- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 D L + ++ L L GI H H A D Sbjct: 115 --GEVIDTLVQAKEMHPG--------------KRNSLDALCDRYGISNAHRALHGALLDA 158 Query: 182 YATLALVWLIREKKPK 197 + + + Sbjct: 159 ELLAEVYLAMTRGQNS 174 >gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] Length = 896 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 83/238 (34%), Gaps = 38/238 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58 V++D ET G +V D + A +R+ + E + + + LP +P Sbjct: 514 IVVFDTETTGLNVFQDDIIEIAAIRI-KGGEVVGEPLDLYIETDKPILPMLGDKENPMYA 572 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + + + + ++ +R F + T I +N +D N R D Sbjct: 573 IYH---EKMSTGELLSPSDALQR---FLAYVGTSPILGHNANYDYNILDNNLQRYCKD-- 624 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + +D L ++R + S+KL+ L + VN+H A Sbjct: 625 -TMQAHDIRCFDSLKLIRLLAPSLH-------------SYKLESLLETFHLAGVNSHQAI 670 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 DV AT++LV L EK + + Q I + P +V R Sbjct: 671 DDVKATVSLVRLCAEKARE---------KQAQQEAFIHHPKVKPFANVLRSNYGERYR 719 >gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099] gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099] Length = 240 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 27/185 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D DR + GV + ++ T + P EA + GI+ Sbjct: 4 IIFDTETTGLDSRDDRVIELGGVELVNRF-PTGRTFHHYINPQ-GRAIHEEAQAVHGISA 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AE + ++ + + + +N FD + F R + + Sbjct: 62 ADLAGKP-TFAEIAE---EWLTFTDGAKLVAHNATFDIGFLNVEFGRLGHPVV-----DP 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 D L + R + P+ L L GI++ H A D Sbjct: 113 GRVVDTLALARRKHPMGPN--------------SLDALCRRYGIDNTKRTKHGALLDSEL 158 Query: 184 TLALV 188 + Sbjct: 159 LAEVY 163 >gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1] Length = 203 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + +E + + Sbjct: 1 MERIAVIDFETTGISPGTGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT VE + + +F + +N FD + R Sbjct: 57 TGITTAMLRSAPPVE-KVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELSRIGRS---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 F+ + A + KL L G + AH A A Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L+ + + Sbjct: 153 DAEMAANLLQHLAGVLRQDH 172 >gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 229 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 58/223 (26%), Gaps = 33/223 (14%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N V+ D+ET G R + V + Q + + + T Sbjct: 28 NTVVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITARFSELM---NPGFRINSFIEDYT 83 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ Q AE R +F + +N FD + F + + Sbjct: 84 GISNQMLAHA-APCAEVMARFAEFIGKH---HLVAHNATFDQRFLDAEFSQIGH------ 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180 + F + A + +L L + H A AD Sbjct: 134 --------------QYPGQFGCSLLLARRLYPEAINHQLATLVRHKQLPTNGTYHRALAD 179 Query: 181 VYATLALVWLIREKKPKLFEYL---YDYRNKNQLRKLIDIQNM 220 T L + + + + K + ++ Sbjct: 180 AEMTGHLWLRMLADLKQGYAITEPPFSLMQKIMAKTKAEVPKF 222 >gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1] gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1] Length = 252 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 31/203 (15%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56 M V+ D ET G V R + V E I F D D Sbjct: 1 MATRSVVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEG 54 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + AE + +F + I +N FD + N F Sbjct: 55 AIAVHGITNEFLVGKPR-FAEVADEFFEFINGAQLII---HNAAFDVGFINNEFALMGQH 110 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + D L + R + + L L G+++ Sbjct: 111 DRADI-TQHCTILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGREL 155 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + + + Sbjct: 156 HGALLDSEILADVYLTMTGGQTS 178 >gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] Length = 300 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 49/190 (25%), Gaps = 26/190 (13%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G DR + + V + VF + E V I GI Sbjct: 55 LIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRIHGI 114 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 K E ++ F + +N FD + N N + Sbjct: 115 DNAKVKDQP-TFREIAQEFLDFIE---GATLVIHNAPFDLGFIMNELRINNFPEIGHMQ- 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 D L R + + L L IE H H A D Sbjct: 170 ----VIDTLVFAREKHPHQRN--------------NLDALCDRYNIERGHRELHGALLDS 211 Query: 182 YATLALVWLI 191 + + Sbjct: 212 ELLAEVYLGM 221 >gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] Length = 225 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G + DR + A + + + + EA + G+T Sbjct: 5 VLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTL---IDPERDIPAEASRVHGMT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + +FF+ + +N FD + F R Sbjct: 62 SADVAGKPK-FAEIAAELLEFFAE---DPLVAHNAPFDFGFLDAEFARIGR--------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 LD R I + ++P L L I+ H+A D Sbjct: 109 -----AALDRARMIDTLALAKQRFPGMP-----NSLDALCRRFDIDFSARTTHNALLDCK 158 Query: 183 ATLALV 188 + Sbjct: 159 LLAEVY 164 >gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] Length = 388 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 48/188 (25%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + V V Q + +TGI+ Sbjct: 15 LAFVDLETTGGSAADHRITEIGVVEVGPQG-----VSTWTSLIDPQQPIPAFIQQLTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + FS + F+ + +N FD + R F R + Sbjct: 70 DEMVRGAPT----FSSIAAELFARLEGRLFIAHNASFDRGFLRAEFERAGFAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DMLCTVRLSRALF----------PRESRHGLDALIERHALVPNARHRALADADLV 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQRLP 173 >gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] Length = 470 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVSGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] Length = 256 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F + EA+ + Sbjct: 10 VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEAEAMQV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + AE + +F I +N FD + + F +F + Sbjct: 67 HGITNEMLADKPA-FAEIADEFIEFIKGAELII---HNAPFDVGFIDHEF--SFLPNPPE 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 121 KVAQMCTVTDSLQLARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKK 195 D + ++ + Sbjct: 167 LDAEILADVFLMMTGGQ 183 >gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 205 Score = 84.1 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D+ET G DR + V++ +++ + + TGIT Sbjct: 10 IVLDFETTGLSPNQGDRAIEIGAVKL-EDGVVVDTFQALM---NPGFRITSFIESYTGIT 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q E R F N + +N FD + S N Sbjct: 66 NQMLSTAAPCEV-VMDRFADFIHGSN---LVAHNASFDQRFLDAEL----------SLIN 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 + + M + A + KL L IE+ H A AD Sbjct: 112 RHYTGEFACSMLIARRIYQE----------APNHKLGGLVAFRQIENDGVFHRALADSEM 161 Query: 184 TLALVWLIREKKPKLFE 200 T L + E + Sbjct: 162 TAKLWLTMIEDIQTRYS 178 >gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 383 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 47/188 (25%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V V + +TGIT Sbjct: 15 IVFVDLETTGGSTAEHRITEVGVVEVGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 EA + + F N + +N FD + R F R Sbjct: 70 NAMVRGAPTFEA-IAPAL---FERLNGKLFVAHNASFDRGFLRGEFRRVGL--------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L + + + H A AD Sbjct: 117 -AFDPDVLCTVRLSRALF----------PAEKRHGLDALVERHTLVPSDRHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQRLH 173 >gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946] gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946] Length = 252 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + + A +R++ E +VF P +TGIT Sbjct: 80 VVLDLETTGLSALENEIIEIAFIRLEG-----EKRQVFQRFVNPGSPIPPFISRLTGITH 134 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + ++ N FD + R F R + Sbjct: 135 RDLEGAP----DVYTVLEEALPLLEDSVLIIQNAPFDLGFLRPRFLRLG-------YKMD 183 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYAT 184 N D + R G + L LA A ++ + + H A DV AT Sbjct: 184 NEVIDTVAWARRA-------------LPGLSKRGLDHLAWAFDLDTIVSRHRALGDVEAT 230 Query: 185 LALVWLIREKKPKLFEYLY 203 L + + Sbjct: 231 LLVAKEMYYMLTAGKPLAL 249 >gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] Length = 209 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 30/178 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D+ET G A R + A V ++ + ++ P Sbjct: 1 MPSPIAVIDFETTGMTPAQGARATEVAIVLMEGE-RVVDRFASLM---KTGVWIPPFITR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT E R +F + +N FD + ++ D Sbjct: 57 LTGITNAMVDAAPAAEP-VMREAARFV---GDAPMVAHNAAFDSRFWQSELRHAGLD--- 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 A + F+ + A S L L G+ AH Sbjct: 110 -----------------APHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLPRTGRAHR 150 >gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis EO147] gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis C6786] Length = 240 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 53/201 (26%), Gaps = 27/201 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + DP A+ + G+T Sbjct: 4 IILDTETTGLNARAGDRVIEIGCV---ELLNRRLTGNNLHFYVNPGRDSDPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F I +N FD + F ++ Sbjct: 61 TEFLSDKPK-FAEIVDELRDFVRDAELII---HNAPFDLGFLDAEFSLLGLPTFTDHCAG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLY 203 + + + L + Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180 >gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus ES-1] gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus ES-1] Length = 233 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 30/195 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + A + + K+ F + D A + G+T Sbjct: 4 IVLDTETTGLDPKQGHRIIEVAAI--ELNGRKVSE-RTFHRYINPEREIDEGAAAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE + + +F + I +N FD + Sbjct: 61 LDRLQDEPK-FAEVAPALLEFIAGAELII---HNAPFDIGFLNAELALAGLPLL------ 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 N D L V + ++ L L ++ H H A D Sbjct: 111 NNPVIDTLKVAKELHPG--------------KKNNLNALCDRYQVDNSHRTLHGALLDTE 156 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 157 LLAEVYLGMTRGQES 171 >gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 934 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 34/189 (17%) Query: 2 TNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 N+ +V D ET G LD + A V R + ++ E +P + Sbjct: 1 MNNRIYVAIDVETTGLQSGLDEIIEVAAV-TFRGRDILDRFE-RLVRPRQSVPL--KITR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI P + E + +F I ++I FD R Y Sbjct: 57 LTGIDPAALAQAPR-FNEIGADLARFI---GNRPIVGHSIGFDLMMLRAQGMNFNQPIY- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D ++ ATS+KL LA GI H +AH A Sbjct: 112 ----------DTFELA-------------TLLLPQATSYKLSALAARLGIPHPDAHRALN 148 Query: 180 DVYATLALV 188 D L Sbjct: 149 DAEVAAQLF 157 >gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis CGDNIH1] gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 52/191 (27%), Gaps = 30/191 (15%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ V++D ET G D DR + A + + + EA Sbjct: 1 MSRS-VLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTL---VDPCRDVPEEATR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G T + + F+ + + + +N FD + F R Sbjct: 57 VHGFTAEMLRGKPL----FADIVEDLLAFFGRDPLIAHNAPFDFNFLNAEFARLGKP--- 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 LD R I ++P L L I+ H+A Sbjct: 110 -----------KLDPARMIDTLVMAKARFPGMP-----NSLDALCRRFSIDLSQRTTHNA 153 Query: 178 KADVYATLALV 188 D + Sbjct: 154 LLDCKLLAEVY 164 >gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] Length = 461 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + + N Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198 >gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440] Length = 203 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + +E + + Sbjct: 1 MERIAVIDFETTGISPGTGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT VE + + +F + +N FD + R Sbjct: 57 TGITTAMLRSAPPVE-KVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELGRIGRS---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 F+ + A + KL L G + AH A A Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L+ + + Sbjct: 153 DAEMAANLLQYLAGVLRQDH 172 >gi|16763100|ref|NP_458717.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144582|ref|NP_807924.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414696|ref|YP_151771.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363623|ref|YP_002143260.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213051586|ref|ZP_03344464.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427175|ref|ZP_03359925.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213855476|ref|ZP_03383716.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25513436|pir||AI1038 probable exonuclease STY4637 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505408|emb|CAD06758.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi] gi|29140220|gb|AAO71784.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128953|gb|AAV78459.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095100|emb|CAR60646.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 194 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 55/190 (28%), Gaps = 20/190 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N ++ D ET G + + D + EA+ I G Sbjct: 18 NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + F + YN FD R + N S W Sbjct: 70 ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181 + + P R +G KL D A G + AH A AD Sbjct: 126 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADC 178 Query: 182 YATLALVWLI 191 TL LV + Sbjct: 179 KMTLGLVRAL 188 >gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] Length = 238 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 24/195 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + DR + V VDR+ ++ P D E V + GI Sbjct: 4 VVLDTETTGLNPTKGDRIVEVGCVEMVDRKL--TGRHFHYYINPERD--IPDEVVAVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 K + + + ++ + +N FD + F R + Sbjct: 60 DNDKVKDSPK-FRDIA---VELWTWLEGAELVIHNAAFDMGFLNAEFER-----FAQEQR 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 + + + + D ++ + L L GI+ H H A D Sbjct: 111 EPFEKLETVCGV-------LDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDS 163 Query: 182 YATLALVWLIREKKP 196 + ++ + Sbjct: 164 EILADVYLMLTGGQT 178 >gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] Length = 1001 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 31/222 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV+ D ET G + A R+ R E + F PE +T Sbjct: 55 EDFVVLDTETTGLSFRDCELIEIAAARI-RGGVVEERFQTF---VHPMGPIPPEISALTH 110 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + +F + ++ +N + R+ D++ Sbjct: 111 ISDLDVTDAP-SAVDAVAALSEFVA--GDPVLAHNATFDRTFVESVPGGRDVSDNW---- 163 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R +S +L D+A A G + H A ADV Sbjct: 164 ------IDTLALSRIA-------------LPRLSSHRLADMARAFGCD-SATHRATADVE 203 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 A + ++ L L D + ++ + + Sbjct: 204 ALAGMWRIMLVALMDLPSGLLDLLSTMHEEVDWQLRPILSYL 245 >gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 494 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 26/221 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET + Q VR +++ST F P +P + I GIT Sbjct: 126 FVAFDVET--ANDDWGSICQIGLVRY-ENGVEVDSTSWFCTPPEPLNFFEPANIAIHGIT 182 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + AE ++ F + +N +FD ++ +++ Sbjct: 183 AEQVAGEPA-FAEVLPKMVDFV---GDLPLVAHNAQFDFTAISRACAAAGIEAPVFNF-- 236 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R+ + +L +A A G+E HDA D A Sbjct: 237 ----GCSLALSRSSRLKFHN-------------HRLPTVAQALGVELRKHHDATEDARAC 279 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + + ++ ++ ++ +D + + P++ Sbjct: 280 AGITIELARRQNHQGGFIDFIHSQGFTLGSLDTERVYPVLR 320 >gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] Length = 855 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 25/186 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G ++ D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R + + Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALV 188 AT ++ Sbjct: 648 ATKDVL 653 >gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 569 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 26/221 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET + Q VR +++ST F P +P + I GIT Sbjct: 201 FVAFDVET--ANDDWGSICQIGLVRY-ENGVEVDSTSWFCTPPEPLNFFEPANIAIHGIT 257 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + AE ++ F + +N +FD ++ +++ Sbjct: 258 AEQVAGEPA-FAEVLPKMVDFV---GDLPLVAHNAQFDFTAISRACAAAGIEAPVFNF-- 311 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R+ + +L +A A G+E HDA D A Sbjct: 312 ----GCSLALSRSSRLKFHN-------------HRLPTVAQALGVELRKHHDATEDARAC 354 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + + ++ ++ ++ +D + + P++ Sbjct: 355 AGITIELARRQNHQGGFIDFIHSQGFTLGSLDTERVYPVLR 395 >gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 383 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A R + V + + +TGIT Sbjct: 15 IVFVDLETTGGSTAEHRITEVGVVEIGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F N + +N FD + R F R Sbjct: 70 NAMVRGAPT--FDVIA--PELFKRLNGKLFVAHNASFDRGFLRGEFRRVGL--------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L + + + H A AD Sbjct: 117 -AFDPDVLCTVRLSRALF----------PAEKRHGLDALVERHALVPSDRHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQRLH 173 >gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM 22836] Length = 256 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 27/200 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N + +D ET G D DR + + ++V ++ E+ + + A I G Sbjct: 7 NPIIFFDLETTGTDTVKDRIVELSYLKVYPNGKE----EMKTRRINPEMPIPAGATAIHG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + ++ + + G+N+ RFD F R D Sbjct: 63 ISDEDVKDCP-TFKQIAKSLADQME--GCDLAGFNSSRFDIPLLAEEFLRADVDIDFSKR 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + + NAH A+AD Sbjct: 120 KMIDVQI--------------------IFHKKEQRTLEAAYKFYCDKDLDNAHSAEADTL 159 Query: 183 ATLALVWLIREKKPKLFEYL 202 AT ++ +K P L + Sbjct: 160 ATYEVLKAQLDKYPDLENDM 179 >gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca DW4/3-1] gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca DW4/3-1] gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 219 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 21/199 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 D ET G D + + A +RVD R + + E +P PEA+ + G Sbjct: 30 TLAFIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEA-RVQPTRLADAHPEALAVCG 88 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++ + E + + ++ +N FD + + + Sbjct: 89 YSDEEWRDA-LPLREVLATVTPLLA---GTLVAGHNTSFDWGFLVEGYRSTELPLPSVDY 144 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R D + + A S L LA G+ H A AD Sbjct: 145 ----HRLDTASLAWPLLA-----------TGEVESLSLNALAKHFGLHRPTPHRAMADAR 189 Query: 183 ATLALVWLIREKKPKLFEY 201 L + + + + Sbjct: 190 CALEVARRLAVRMSRGGHM 208 >gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 240 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 29/202 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D ET G D DR + GV + + + + + A + G++ Sbjct: 4 IAFDTETTGLDPRNGDRLVEIGGV---ELFNHVPTGNTYHVYINPERDMPEAAFNVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V F+ + +F + + +N FD + R + Sbjct: 61 AEFLADKPV----FAEIVDEFLAFVGDARLVIHNAAFDMGFINMELSRAGRLPIPRTQ-- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 D L++ R + P+ L L GI++ H A D Sbjct: 115 ---VLDTLELARRKHPMGPN--------------SLDALCGRYGIDNSRRTRHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 + + + + Sbjct: 158 LLAEVYLELIGGRQTALGLVLQ 179 >gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168] Length = 1447 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 59/482 (12%), Positives = 133/482 (27%), Gaps = 51/482 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI+D ET G + +F + + + +IE + FF KP +P ITGI Sbjct: 388 KFVIFDLETTGLSAFYNEIIEFGAIVL-QNGIEIEKHQ-FFIKPT-GKIPSA-ITKITGI 443 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +I + ++ +N FD + + + Sbjct: 444 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 494 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 N D L+V R + S L+++A IE+ AH A D Sbjct: 495 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDA 541 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + + KN + +L + + + Sbjct: 542 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIVAKNQIGIKKLYK 601 Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + +A +I + + + T V Sbjct: 602 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 661 Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P + + + ++ K + L+ + K Sbjct: 662 EIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 721 Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403 + ++ + D + + + + E+L D+ +L Sbjct: 722 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 778 Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463 +N ++ ++ K L + + KL+ + ++ L + Sbjct: 779 VVKN--SNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKAYEKYGRFLPKLIENR 836 Query: 464 LQ 465 ++ Sbjct: 837 IK 838 >gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] Length = 242 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 35/230 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V + + F D L DPEA I Sbjct: 9 IVLDTETTGLNKVGAHYQGHRVIEIGAVEM-VNRRLTGNH--FHVYLKPDRLVDPEAYAI 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ ++ F + I +N FD + F + Sbjct: 66 HGISDEFLADKP-TFADTAKTFLDFIRGADLII---HNASFDIGFLDYEFR--LLEQNSA 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R ++ L L I++ H A Sbjct: 120 KIETFCTITDSLLLARQLFPG--------------KRNNLNALCDRYHIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 D + + + + + ++ + + + P+V + Sbjct: 166 LDAEILAEVYLAMTGGQT-----SLSFSMETDQQQQNNKEEIKPIVRPTS 210 >gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] Length = 240 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 31/200 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + L D EA+ Sbjct: 11 VILDTETTGMNQGAGAIFLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQLIDEEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ + AE ++ +F + + +N FD + + F Sbjct: 68 VHGISNEYVANKPK-FAEIAQSFIEFI---DGAEVVAHNASFDISFMDHEFG--LLQPKG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + + D L + + ++ + L L GI++ H A Sbjct: 122 PKTADICAILDTLAIAKFLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167 Query: 178 KADVYATLALVWLIREKKPK 197 D + L+ + K Sbjct: 168 LLDAEILADVYLLMTGGQTK 187 >gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622] gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622] Length = 219 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 21/199 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 D ET G D + + A +RVD R + + E KP PEA+ + G Sbjct: 30 TLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEA-RVKPTRLADAHPEALAVCG 88 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++ + E + + ++ +N FD + + R+ + Sbjct: 89 YSDEEWRDA-LPLQEVLATVTPLLA---GTLVAGHNTSFDWGFLVESYRRSELALPSVDY 144 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R D + + A S L LA G+ H A AD Sbjct: 145 ----HRLDTASLAWPLLA-----------TGEVESLSLNALAKRFGLHRPTPHRAMADAR 189 Query: 183 ATLALVWLIREKKPKLFEY 201 L + + + + Sbjct: 190 CALEVARCLAVRMARGGHM 208 >gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans Sphe3] gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 236 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 22/186 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GR+ R + VD Q E + E EA + GIT ++ Sbjct: 12 FDLETTGRNSRAARIVTASVTVVDHQAEVMREHEWLA---DPGVEIPTEASDVHGITTEQ 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A R+G E +R + + + N +D R Sbjct: 69 ARREGRPAHEVTREVAAALQELFDSNIPVIAFNASYDFTVLAAESARYGIPQL------- 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +R+ +LD P + L L G+ NAH + AD ATL Sbjct: 122 -TRFPVLD---------PYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATL 171 Query: 186 ALVWLI 191 ++ + Sbjct: 172 RVLDAM 177 >gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] Length = 242 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 26/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G DR G++V + I+S E F+ + E +T IT Sbjct: 58 VVFDLETTGFYPNNGDRILSIGGIKVKGD-KVIDS-ETFYSLINSNGGVSEEITKLTNIT 115 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + F S C + ++ + + +++ + Sbjct: 116 EKDLIEAP-PINDVLQNFYTFMS---GCTLVAHHANHERSFMQHMTWSIL---------- 161 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + L + GI H A D AT Sbjct: 162 ---------KSRFEHRIIDTAFLTKIVEPNKNLVSLDECCDHYGITIKKRHHALYDAIAT 212 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + L Sbjct: 213 AQLWTESVREIQNLGFQHLK 232 >gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium] Length = 195 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 23/196 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M FV+ D ET G D Q + D + + +T V +P + I Sbjct: 22 MHGDFVVLDTETTGLGP-TDEVVQIGII--DSKGRTVLNTMVRPTRPVPSVV-----TRI 73 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+T +K ++ + + + N+ FD + Sbjct: 74 HGLTNEKLAEA-SPFSDLYVSLSSILA---GVTVIAYNMDFDWRMLVQSAGLYGLPA--- 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D A+ A++ + + KL + I V AHDA +D Sbjct: 127 --------FRTGDRQCAMKAYAQGHGMFDLKRRTYAYHKLGEACRHQKIPVVQAHDALSD 178 Query: 181 VYATLALVWLIREKKP 196 TLALV + E Sbjct: 179 ARMTLALVRKMAEFHS 194 >gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae 3841] Length = 326 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 32/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + D + V D + ++ PE +TGI Sbjct: 75 VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +++ + R + + +I +N FD + Sbjct: 135 TDAMVEGQ-LIDIQSLRTLIE-----PADLIIAHNAGFDRPFCEA--------------- 173 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L G H H A D +A Sbjct: 174 --------FSKIFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ + F LY ++++R + Sbjct: 225 LLEILDREQRDGESPFTELYRASQRSRIRIFAEHSPF 261 >gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 230 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 66/241 (27%), Gaps = 24/241 (9%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + + F+C P Y + A+ + G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRKVTGNNLHFYCNPN--YEVEAGALAVHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++ F I +N FD + + Y + Sbjct: 62 NEFLADKP-SFEENVDQMIDFLRGAEIII---HNAAFDVPFINWELGLLKNNKYGTLEQH 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D L++ R + + L L +H H A D Sbjct: 118 VAKIVDSLELARKKHPLQKN--------------NLDALCKRYHIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + + + L +K+ + D + I Sbjct: 164 LLADVYLAMTGGQTNLVLQTTKNASKDTIDIDFDKLKLRSANETIINISEHDKYLCNILK 223 Query: 243 V 243 + Sbjct: 224 L 224 >gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM 17241] gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM 17241] Length = 270 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 75/217 (34%), Gaps = 28/217 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAV 58 +++D ET G D D+ + A +R+++ + F + + + V Sbjct: 36 KALILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFI-RLPEGQQLTEKIV 94 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGIT + +GV + + + + ++ +N +FD + R++ Sbjct: 95 ELTGITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLKGVKL-- 152 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R + LD + P + +A + N+H A Sbjct: 153 --------APRLEFLDTLTVYKDRRPYPHKLADAI----------IAYDLDGKVKNSHRA 194 Query: 178 KADVYATLALVWLI--REKKPKLFEYLYDYRNKNQLR 212 DV A L ++ + L+ L+ Y K + Sbjct: 195 IDDVTAMLEVLRAMGEERDDLALYVNLFGYNAKYGVN 231 >gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ] gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ] Length = 244 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + + F D D AV + GIT Sbjct: 4 VVLDTETTGMPVTEGHRIIEIGCVEL-QGRRLTGRH--FHVYLQPDRTVDEGAVAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + +F I +N FD + + F R + Sbjct: 61 DDFLADKPR-FADIAEEFFEFIKGAQLII---HNAAFDIGFIEDEFSRLGQTERADVNAH 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + + L L +++ N H A D Sbjct: 117 -CTVLDTLLMARERHPGQRN--------------SLDALCKRYDVDNSNRDLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 162 ILADVWLAMTGGQTH 176 >gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] Length = 410 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 29/195 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D ET G DR + A + ++ + E + E D P I Sbjct: 1 MPEYAVLDLETTGLFPEKHDRIIEVAIIILNSKGEIADQYETL---VNPDRDLGP--THI 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ + + I + I +NI +D + ++ F R + Sbjct: 56 HKISAGMVSEAPK-FKDIAGDIIHCLA---GKHIIGHNIAYDYRFIKHEFRRLKVEIPEP 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S + KL+ L I + H A D Sbjct: 112 Q-------------------MSCTFHLTRKVEPDLPCRKLEALCSYFDIPLEHKHAAYFD 152 Query: 181 VYATLALVWLIREKK 195 YAT L + +K Sbjct: 153 CYATAVLFQTLLKKH 167 >gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913] gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 718 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 28/176 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G +R + V++ +Q E +++ + +TGI Sbjct: 554 YSVVDIETTGGLKGGNRITEIGIVKI-KQGEIVDTWTTL---INPERPIPRFITSLTGIN 609 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + + S I +N+ FD + + R Sbjct: 610 DAMVSNAP-IFSEIAAPLLNQLS---GSIFVAHNVNFDYGFIKKELERIGI--------- 656 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + L + G S+ L +L+ ++ N H A D Sbjct: 657 -NFKMPKLCTVVESRKAF----------KGLKSYSLGNLSAHFNLDLTNHHRALDD 701 >gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] Length = 896 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 38/238 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58 V++D ET G +V D + A +R+ + E + + + LP +P Sbjct: 514 IVVFDTETTGLNVFQDDIIEIAAIRI-KGGEVVGEPLDLYIETDKPILPMLGDKENPMYA 572 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + + + + ++ RR F + T I +N +D N R Sbjct: 573 IYH---EKMSTGELLSPSDALRR---FLAYVGTSPILGHNANYDYNILDNNLQR---YCN 623 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + +D L ++R + S+KL+ L + VN+H A Sbjct: 624 DTMQAHDIRCFDSLKLIRLLAPSLH-------------SYKLESLLETFQLAGVNSHQAI 670 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 DV AT++LV L EK + + Q I + P +V R Sbjct: 671 DDVKATVSLVRLCAEKARE---------KQAQQEAFIHHPKVKPFANVLRSNYGERYR 719 >gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 382 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G + R + V V + +TGIT Sbjct: 15 IVFVDLETTGGSTSEHRITEVGVVEVGPTG--VTRWSSL---IDPQQPIPSFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E+ + +++ N + +N FD + R+ F R Sbjct: 70 NDMVHGAPTFES-IAPALYERL---NGKLFVAHNASFDRGFLRSEFRRAGL--------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A G L L + + + H A AD Sbjct: 117 -AFDPDVLCTVRLSRALF----------PGEKRHGLDALVERHALVPSDRHRALADADLI 165 Query: 185 LALVWLIRE 193 + Sbjct: 166 WQFWQRLPT 174 >gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] Length = 242 Score = 84.1 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D A R + V + T F+ + EA + G++ Sbjct: 4 IVFDTETTGLDPAKGHRIVEIGAVEI-SNLIPTGRTFHFY--LDPERDMPEEAFRVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + +F + + +N FD + ++ Sbjct: 61 TAFLTGQKK-FREIAEAFLEFVADAQ---LVAHNAEFDMRFVNAELAMLGLEAIAA---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R ++ + + L L G++ + H A D Y Sbjct: 113 -DRVVDTLTIARRLHPGAAN--------------SLDALCQRYGVDSSRRDKHGALLDSY 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 230 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D DR + V +I + VF C D EA + G++ Sbjct: 4 IVFDTETTGLDPRNGDRLVEIGCV---ELVNRIATGSVFHCYFNPDRDMPAEAEAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + + F + +N FD + + Sbjct: 61 AAFLSDKPK-FSERAAELLDFL---GDAPLVAHNAGFDFGFLNSELTFCGMGEVSR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D + + R + + L L GI+ H H A D Sbjct: 113 -DRMVDTVAIARRKHPGA--------------KLSLDALCSRYGIDRSHRTKHGALLDAE 157 Query: 183 ATLALV 188 L Sbjct: 158 LLAQLY 163 >gi|190895636|ref|YP_001985928.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 652] gi|190699581|gb|ACE93665.1| probable polymerase protein, epsilon subunit [Rhizobium etli CIAT 652] Length = 326 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 61/217 (28%), Gaps = 32/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + D + V D + ++ PE +TGI Sbjct: 75 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGSIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + R + +I +N FD + Sbjct: 135 TDAMVEGQVID----IRSLSDLIE--PADLIIAHNAGFDRPFCEA--------------- 173 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L G H H A D +A Sbjct: 174 --------FSPLFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ + + F LY ++++R + Sbjct: 225 LLEILDRQQGEGESPFAELYRASQRSRIRIFAEHSPF 261 >gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] Length = 234 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + DR + V +DR+ + F + + A+ + G+ Sbjct: 4 IVLDTETTGLNPRSGDRIIEIGCVELIDRRL----TGNNFHHYINPERDSEEGALAVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE + S + +N FD + R ++ Sbjct: 60 TTEFLSDKPK-FAEIVDEFRDYISGAE---VVIHNAPFDVGFLDAELKRVEMPLFKDHVG 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 +LD ++ L L G+ H H A D Sbjct: 116 G------ILDTLQQAKELH-----------PGKRNSLDALCDRYGVSNAHRTLHGALLDA 158 Query: 182 YATLALVWLIREKKPK 197 + + + Sbjct: 159 ELLAEVYLAMTRGQNS 174 >gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 57/203 (28%), Gaps = 31/203 (15%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56 M N V+ D ET G V R + V E I F D D Sbjct: 1 MANRSVVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEG 54 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + AE + +F I +N FD + N F Sbjct: 55 AIGVHGITNEFLVGKPR-FAEVADEFFEFIQGAQLII---HNAAFDVGFINNEFALMGQH 110 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + D L + R + + L L G+++ Sbjct: 111 DRADI-TQHCTILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGREL 155 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + + + Sbjct: 156 HGALLDSEILADVYLTMTGGQTS 178 >gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] Length = 470 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207 >gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] Length = 461 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ ++ V +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSEHGVEAWIRQCFRLMNPK 198 >gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] Length = 855 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 25/186 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G ++ D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R + + Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALV 188 AT ++ Sbjct: 648 ATKDVL 653 >gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] Length = 1461 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 61/478 (12%), Positives = 131/478 (27%), Gaps = 51/478 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G ++ + + + T+ F P +TGIT Sbjct: 426 YVSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQEP---IKPFTENLTGIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G+ E ++I+ + + +N NF Sbjct: 483 NAMIEKSGLELKEALQKIYNDLN--GKIALAHNARFD----------FNFLKEKFRQAKI 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 ++D + KL+D+A G+E+ AH D Sbjct: 531 EFPNVTVIDTLIVSRIVF----------PQNKKHKLEDVATRVGVEYDPTVAHRGDYDAK 580 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + ++ K ++ N K+ L ++ + L Sbjct: 581 VLAEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGY--L 638 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL---FTSHDELKGLVPVPIKEVH 296 + + +L+ L S L RL + + + + + + Sbjct: 639 TTALTKNLYNGPKTFMEDLAAH-SENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYDYI 697 Query: 297 LNKCPILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-- 353 P + + E+ I K ++ ++ K + + Sbjct: 698 EVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVAYEVL 757 Query: 354 ------QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407 ++ L++ A + E++ D++L E N Sbjct: 758 VYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIE----DIVIN 813 Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + K L + E+ KL L E + E L + E ++ Sbjct: 814 NTNKI-ADMCDKIQ-VIKDKLYTPKFEDSGKKLHDLVYETAYKKYGEKLPKIVEERIE 869 >gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] Length = 801 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D ET G+ V R Q + +Q + ++ E F L D +T Sbjct: 5 ETFVVVDLETTGQSVTKGGRIIQIGMTFI-KQRQIVDHFESF---VNPGQLIDRNIQQLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + E E + + N II +N+ FD Y + F R + Sbjct: 61 HIAQKDVKNAPYFE-ELAPMLQNLL---NNTIIIAHNVNFDYPYLNDEFRRTGFPEL--- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +S D + + + A ++L DL I NAH A AD Sbjct: 114 ---TSSAIDTVQLAQI-------------LLPTAPGYRLVDLTTYLDITLNNAHRANADA 157 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 +AT L + ++ +L + Sbjct: 158 HATARLFLKLWQRAEQLPAIVLK 180 >gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 472 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 28/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63 FV +D ET + A Q VRV ++E + C P DP V I GI Sbjct: 122 FVGFDVET--ANPAWGSICQIGLVRV-IDGREVERV-TWLCTPPPGLDEFDPSNVAIHGI 177 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + ++RI + + +N +FD R D Sbjct: 178 SAETVEGSPP----AAQRIDELVEFVGELPVVAHNAQFDATALREACRAVGRDIPNIM-- 231 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 F+ Q + + +L LA G++ HDA D A Sbjct: 232 -----------------FACTLAQSRAAKLKVQNHRLPTLAEHFGVQLEKHHDAGEDAAA 274 Query: 184 TLALV 188 ++ Sbjct: 275 CAGIL 279 >gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis] gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis] Length = 205 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 33/192 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD---RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D+ + V D + + F + PE+ + Sbjct: 5 VILDTETTGTDYVQDKVIELGMVAFDYCPQTGMIGDVHGTFNQLEDPGFPIPPESTKVHH 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + E + F P + II +N+ + Sbjct: 65 ITDEMVAGKSINDEEV-----EAFIKPASIIIAHNSRFDRRFVE---------------- 103 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 RW + ++ Q +G S KL+ LA +G H H A D + Sbjct: 104 ----PRWPIF----QSKPWACTFAQIDWDAEGLGSSKLEFLAYRSGF-HYEGHRASTDCH 154 Query: 183 ATLALVWLIREK 194 A L ++ + Sbjct: 155 ALLEVLHCATTE 166 >gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 173 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 31/191 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G + Q + V R ++I + + D + +TGI+ Sbjct: 13 YVAFDLETTGLG-FSSKIIQISAVHF-RDGKEIGAFDQL---VNPDRPIPAKITQLTGIS 67 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + F + GYN+ +FD R + + Sbjct: 68 DADVYLSPTID-QVIHDFMAFIKDLP--LAGYNSKKFDIPMLRANTGIDL---------S 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G D+L++ R ++KL + GI++ AHD+ D AT Sbjct: 116 GLPHMDVLEMARL-------------SPIRTPNYKLTTVKAHYGIQN-RAHDSLNDSRAT 161 Query: 185 LALVWLIREKK 195 ++ R+ Sbjct: 162 ALILEEFRKGN 172 >gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] Length = 235 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G + DR + A + + + + EA + G+T Sbjct: 5 VLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTL---IDPERDIPAEASRVHGMT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + +FF+ + +N FD + F R Sbjct: 62 SADVAGKPK-FAEIAAELLEFFAE---DPLVAHNAPFDFGFLDAEFARIGR--------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 LD R I + ++P L L I+ H+A D Sbjct: 109 -----AALDRARMIDTLALAKQRFPGMP-----NSLDALCRRFDIDLSARTTHNALLDCK 158 Query: 183 ATLALV 188 + Sbjct: 159 LLAEVY 164 >gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55] Length = 285 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 71/270 (26%), Gaps = 28/270 (10%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N FV+ D ET + R + V++ + E +++ + + +T Sbjct: 15 NEFVVVDIETTAFSIQKGGRILEIGAVKI-KNGEIVDNFSTL---VNPELKIPKKITELT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + ++ ++F S +I +N FD + R + Sbjct: 71 KITNDMVKDAPYI-GNVLQKFNEFISDS---VIVAHNASFD-------WDRFLKPALATI 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +++ + L DL + H A D Sbjct: 120 ------------GIKSSHKVMDTVSLSKFTFPDKKKHTLIDLCSYLEVPLEKNHRAIDDA 167 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT ++ + N++ +I+ +V + L Sbjct: 168 IATAKCFLKLKALNAEKLNDNIQVEFFNEINCDENIEVCKSIVIKRVKYWEKSKMKRLYV 227 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271 + ++ DL Sbjct: 228 NFSSGVNRGEAYFNILTKTWYIKKFDLQID 257 >gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3] gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3] Length = 255 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D E G D+ DR + +++ E+I V + + E+ I GIT Sbjct: 9 LVFFDIEATGLDITNDRIIELTILKLMPDGERI----VRTRRFNPEMPIPAESTAIHGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + + GYN+ RFD F R + Sbjct: 65 DDDVRDCP-PFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVE-------- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D++ + + EH+ AH A+AD AT Sbjct: 114 -------VDLLAMQHIDVQTIFH-----KMEPRTLEGAVRFYCHREHIGAHGAEADTIAT 161 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 L ++ +K + + Sbjct: 162 LDVLMAQLDKYGDELPHSVKELS 184 >gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] Length = 259 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 62/212 (29%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 14 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + +F I +N FD + + F D + Sbjct: 71 HGISDEFLADKP-TFADIAPEFLEFIRGAELII---HNAAFDIGFMDHEFRMLQQDIPKT 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 127 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + L + +++N Sbjct: 171 LDAEILSEVYLAMTGGQTSLTFSMEGDQSQND 202 >gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium ATCC 35110] gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 229 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 19/200 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G DV D+ V + D + +S E + A D E++ + GI Sbjct: 44 FVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQEASG---DKESIPVHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + F S ++ ++ FD R F Sbjct: 101 LKKDLAMAATEQ----GALESFLSYIAGSVLVAHHAMFDIEILNQALGRFFDLKIFN--- 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D D + + + S+D A + L L I + H A D + Sbjct: 154 ---AVIDTADFAK-----RIEKGPFSSQDTKAGDYSLDKLCERYRIPIYDRHTAPGDAFI 205 Query: 184 TLALVWLIREKKPKLFEYLY 203 T L ++ K Sbjct: 206 TAQLFQILLYHAEKKRILTL 225 >gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris aestuarii DSM 271] gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris aestuarii DSM 271] Length = 189 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 21/193 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G + A Q + ++ +E C P + P+A+ I+G + Sbjct: 11 DVETTGTNPAKHGIIQIGAI-IEVDGVVVEECN-LKCAPHEGAEISPDALAISGTERSEL 68 Query: 69 LRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 E + F S + C NI FD + ++R+ D Y Sbjct: 69 ESRMTSH-EAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFI-QAWFRHHGDKYGIG 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L ++ ++L+ + GI +AHDA +D+ Sbjct: 127 SFINWRMLDPLPLLFIKDFTRQIT---------LPDYRLETVCRHFGIAL-HAHDAMSDI 176 Query: 182 YATLALVWLIREK 194 AT L+ + + Sbjct: 177 RATRELLLKLLYQ 189 >gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 204 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1] Length = 204 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 423 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 46/188 (24%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G + R + V V + +TGIT Sbjct: 54 IVFVDLETTGGSTSEHRITEVGVVEVGPAG--VTRWSSL---VDPQQPIPSFIQQLTGIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ N + +N FD + R F R Sbjct: 109 NAMVRGAPT--FDAIA--PELFARLNGKLFVAHNASFDRGFLRGEFRRAGISFDP----- 159 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A L L + + + H A AD Sbjct: 160 -----DVLCTVRLSRALF----------PSEKRHGLDALVERHSLVPSDRHRALADADLI 204 Query: 185 LALVWLIR 192 + Sbjct: 205 WQFWQRLH 212 >gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU144] gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU045] gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU028] Length = 902 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 30/232 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + D Q V + + I++ D P +T I Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQN-QVIDTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + ++ E + I+Q C+ +NI FD + + F + Sbjct: 61 EEEMLVQAPY-FNEVADDIYQLIKD---CVFVAHNISFDLNFIKKAFEKCNI------QF 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ + S++L LA ++ I NAH A D Sbjct: 111 KPKRVMDTLEL-------------FKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 T L+ + K + D + + ++ ++ ++ Sbjct: 158 T---AKLMIKAFEKFEQLHLDTQKQLYYLSKNLKYDLYHILFEMVRNYQTKP 206 >gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] Length = 209 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 30/178 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D+ET G A R + A V ++ + ++ P Sbjct: 1 MPSPIAVIDFETTGMTPAQGARATEVAIVLMEGE-RVVDRFASLM---KTGVWIPPFITR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT E+ R +F + +N FD + ++ D Sbjct: 57 LTGITNAMVDAAPAAES-VMREAARFV---GDAPMVAHNAAFDSRFWQSELRHAGLD--- 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 A + F+ + A S L L G+ AH Sbjct: 110 -----------------APHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLPRTGRAHR 150 >gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5] Length = 115 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D +DR + G+ + + +T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + AE + I FF +N FD + F R Sbjct: 62 EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPILPE 113 >gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14] gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14] Length = 279 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 28/200 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAV 58 +T +I+D ET G D+ DR Q + ++V E+ + + Sbjct: 5 LTKPLIIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRGDEL------VNPEKPIPAFVS 58 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ E ++ F G+N+ RFD F R D Sbjct: 59 DLTGITNEQVKNAP-TFKEIGTKLADIFK--GCDFAGFNSNRFDIPLLCEEFLRAGIDFD 115 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D + + + T K++D AH A Sbjct: 116 F----SKCRLIDAQTIFHK-----MEKRNLAAAYKFYTGHKMED--------DFEAHRAD 158 Query: 179 ADVYATLALVWLIREKKPKL 198 D AT ++ + Sbjct: 159 QDTEATYRVLQGELDMYDPD 178 >gi|269964031|ref|ZP_06178337.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831250|gb|EEZ85403.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 249 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V + + + + + E+V I Sbjct: 59 FVSVDFETTGLNAEEDAILTIGLVPF-----TLGRVQCSGSRHWVVNPNRELNEESVVIH 113 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + +E + I + I+ + + + N + + + Sbjct: 114 GITDSEVKNAPQLE-QILDAILDALA---GKIVVVHYKNIERQFFNNALLNSVGEGIQ-- 167 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D LD+ AI +G + S +L + H A D Sbjct: 168 ----FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLPAYQPHHALTDA 223 Query: 182 YATLALVWLIREKK 195 AT L+ + Sbjct: 224 LATAELLQAQLQYH 237 >gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599] gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 235 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 26/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G D V + + + + F+ P +TGIT Sbjct: 54 VVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLG--DSFYTLVNPGRAIPPHIRSLTGIT 111 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +FF + ++ R + + R+ ++ + Sbjct: 112 DDMVADAPP----LLEALSRFFQYVGDRPLVAHHSRHEREFLRSGLWKTSRRPFT----- 162 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +LD M I + L L A+ I H A D A Sbjct: 163 ----HRMLDTMLLIRLLNNPIGNG----------SLDALCAAHDIPISRRHHAYCDALAA 208 Query: 185 LALVWLIREKKPKLFEYLYD 204 L K Sbjct: 209 GTLWAKYLVKAQSQGFTNLR 228 >gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] Length = 936 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 27/201 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G DR QF + + + I++ + +TGI Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAII-KNRQIIKTYSFL---INPEADIPQAVQNLTGIK 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + V +++ +I + +NI FD + N + Sbjct: 66 PTDVINQPV-FKKYAAQIEDILQD---TVFVAHNINFDLPFLNAELAANSFP------KL 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N D +++ + + S++L DL + ++H N H A +D YAT Sbjct: 116 HNRAIDTVELSKIAF-------------PTLPSYRLSDLTHSLNLKHTNPHQADSDAYAT 162 Query: 185 LALVWLIREKKPKLFEYLYDY 205 +L+ I +K L + + Sbjct: 163 ASLLLKIFDKLETLPQSTLNT 183 >gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1] gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1] gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 219 Score = 83.7 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 61/199 (30%), Gaps = 21/199 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 D ET G D + + A +RVD R + + E +P PEA+ + G Sbjct: 30 TLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEA-RVQPTRLADAHPEALAVCG 88 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++ + E + + ++ +N FD + + R Sbjct: 89 YSDEEWRDA-LSLEEVLATVTPLLA---GTLVAGHNTSFDWGFLVEGYRRTAL------- 137 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + LD + G S L LA GI H A AD Sbjct: 138 TLPSVDYHRLDTASLAWPLLATG--------EVESLSLNALARHFGIHRPTPHRAMADAR 189 Query: 183 ATLALVWLIREKKPKLFEY 201 L + + + + Sbjct: 190 CALEVARRLAVRMSRGGHM 208 >gi|327194132|gb|EGE61003.1| putative polymerase protein, epsilon subunit [Rhizobium etli CNPAF512] Length = 326 Score = 83.7 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 61/217 (28%), Gaps = 32/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + D + V D + ++ PE +TGI Sbjct: 75 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + S I +I +N FD + Sbjct: 135 TDAMVEGQVIDIRSLSALIE------PADLIIAHNAGFDRPFCEA--------------- 173 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L G H H A D +A Sbjct: 174 --------FSSLFTGKAWACSVAEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ + + F LY ++++R + Sbjct: 225 LLEILDRQQGEGESPFAELYRASQRSRIRIFAEHSPF 261 >gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 244 Score = 83.7 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 57/205 (27%), Gaps = 27/205 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + F + I +N FD + F Sbjct: 61 TEFLSDKPK-FGEIADQFRDFIQGADLII---HNAPFDIGFLDVEFALLGLPPVS---TY 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 + + + L + + Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184 >gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400] gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 244 Score = 83.7 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 57/205 (27%), Gaps = 27/205 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + + F+ P D DP A+ + G+T Sbjct: 4 LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + F + I +N FD + F Sbjct: 61 TEFLSDKPK-FGEIADQFRDFIQGADLII---HNAPFDIGFLDVEFALLGLPPVS---TY 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + ++ L L GI H H A D Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 + + + L + + Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184 >gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 405 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 54/202 (26%), Gaps = 29/202 (14%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + I D ET G DR + + V P D P I Sbjct: 1 MTGYTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATL-VNPQRDVGP----THI 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + L E + + + +N RFD + F R Sbjct: 56 HGITARDVLDAP-TFQEVAPYL---IGSLAGRTLVAHNARFDTQFLDYEFERA------- 104 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 L M+ S S KL+D +A + H + H A D Sbjct: 105 -SVGTRPPTPSLCTMQ-----------LSSSYLRGASRKLKDCCVAANVPHADEHTALGD 152 Query: 181 VYATLALVWLIREKKPKLFEYL 202 A L+ + + Sbjct: 153 ARAVAGLLNYYLVNTDRPVPWS 174 >gi|311746871|ref|ZP_07720656.1| exonuclease [Algoriphagus sp. PR1] gi|126578557|gb|EAZ82721.1| exonuclease [Algoriphagus sp. PR1] Length = 267 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 27/196 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N +D E G +++ DR + + V+ + E++ + EA I Sbjct: 5 LKNSIAFFDLEATGTNISTDRIVEISIVK----LKIDGGQEIYTRRVNPGVPIPLEASLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+ + + + ++ ++QF + + G+N +++D F R + Sbjct: 61 HGLYDKDLKDEP-SFKDIAKEVYQFI--GGSDLSGFNVLKYDIPLLVEEFLRAGIE---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +++ A F + + ++K G NAH A+AD Sbjct: 114 ------FELDKRNLLDAQKIF-----HMMEKRNLTAAYKF-----YCGKTLENAHSAEAD 157 Query: 181 VYATLALVWLIREKKP 196 AT+ + E+ Sbjct: 158 TLATMDVFISQVERYN 173 >gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 211 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 49/200 (24%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + +E + + Sbjct: 1 MERIAVIDFETTGISPGTGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + +F + +N FD + R Sbjct: 57 TGITTAMLRSAP-PVDKVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELSRIGRS---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 F+ + A + KL L G + AH A A Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L+ + + Sbjct: 153 DAEMAANLLQHLAGVLRQDH 172 >gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] Length = 243 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFMV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + V F + F + +N FD + F + Sbjct: 66 HGISDEFLMNKPV----FGDVVEDFLDYIRGAELVIHNASFDIGFMDYEFGMLKRGLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILADVYLAMTGGQTSI 185 >gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591] gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591] Length = 244 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 30/224 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA I Sbjct: 9 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRH--FHVYLRPDRLVDPEAYNI 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A+ + F + +N FD + F D + Sbjct: 66 HGISDEFLVDKP-TYADVADDFLDFIRGAE---LVIHNASFDIGFMDYEFRLLGRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + + + L + + ++ + P Sbjct: 166 LDAEILAEVYLAMTGGQTSLAFSMEGEGQQQAVQTETIQRISRP 209 >gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 239 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 55/200 (27%), Gaps = 33/200 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G D DR + V E ++ + + D EAV + Sbjct: 4 IVLDTETTGLDWRNGDRVIEIGCV------ELLDRSLTGRHYHVYINPGRGIDAEAVAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + A+ F + +N FD + R Sbjct: 58 GITEEFLADKPK-FADIVADFEDFVRDAE---LVIHNASFDVGFLDAELERLGR------ 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 + A+ A D ++ + L L I+ H H A Sbjct: 108 -----------AKLGALCAGVVDTLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALL 156 Query: 180 DVYATLALVWLIREKKPKLF 199 D + + + L Sbjct: 157 DAELLAEVFLAMTRGQESLM 176 >gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis] gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis] Length = 334 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 29/210 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G +R + A D + + + + I GI Sbjct: 133 TVIVFDLETTGFSREYERIIEIALQ--DLHGGENSTFQTL---INPGRIVP--NSHIHGI 185 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 T + V + + Q+ P + + +N FD + N F R+ D Sbjct: 186 TTHMVCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDV 245 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 D L + R +W S LQ L A GI+ +AH Sbjct: 246 PC-----NWLFMDTLPLAR----------KWMKSKGLKISSSLQGLREAFGIKLEGSAHR 290 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206 A +DV L ++ L Sbjct: 291 AMSDVRLLAKLFQMLTFNLKTTLPSLVAES 320 >gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 454 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D + ++ + P V +TGI Sbjct: 2 YTILDIETTGGKYNEEGITEIAIHKFDGH-QVVDKFISL---VNPEKDIQPFVVNLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++RI + ++ +N +FD R F R Y+ Sbjct: 58 NKMLRTAPKFH-EVAKRIVEITEDS---VLVAHNAQFDYRILRTEFRRLGYNF------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 A S+ L L + GI + H A D AT Sbjct: 107 -------------ERKTLCTVDLSKYLLPDAESYSLGKLVRSLGIPMSDRHRANGDAIAT 153 Query: 185 LALVWLIREKKPK 197 L L L+ K + Sbjct: 154 LKLFKLLLAKDSE 166 >gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10] gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10] Length = 254 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 69/221 (31%), Gaps = 27/221 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 I+D ET G +VA DR + + ++V+ S E + E+ I G Sbjct: 7 KPLCIFDLETTGVNVAKDRIVEISILKVNPDG----SRESKTWLVNPEMYIPKESTEIHG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ E + ++ + + T + G+N+ RFD R D + Sbjct: 63 ISDDDVKNSPK-FKEIAPKVMEMIT--GTDLGGFNSNRFDVPLLAEELLRAGIDFDLTKF 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ + E VNAH A+ADV Sbjct: 120 KL----VDVQTIYH----------------KMEPRNLSAAYNFYCKKELVNAHSAEADVL 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 AT ++ +L + + K D+ M Sbjct: 160 ATFEVLDAQVAHYNELPNDIAGLSEFSHHHKFADLAGMIRF 200 >gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 230 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 68/241 (28%), Gaps = 24/241 (9%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D +R +F V V + + F+C P Y + A+ + G+T Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRKVTGNNLHFYCNPN--YEVEAGALAVHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E E ++ F I +N FD + + Y + Sbjct: 62 NEFLADKPLFE-ENVDQMIDFLRGAEIII---HNAAFDVPFINWELGLLKNNKYGTLEQH 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D L++ R + + L L +H H A D Sbjct: 118 VAKIVDSLELARKKHPLQKN--------------NLDALCKRYHIRNDHRTFHGALLDSE 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + + + L +K+ + D + I Sbjct: 164 LLADVYLAMTGGQTNLVLQTTKNASKDTIDIDFDKLKLRSANETIINISEHDKYLCNILK 223 Query: 243 V 243 + Sbjct: 224 L 224 >gi|46402125|ref|YP_006619.1| Gp39 [Klebsiella phage phiKO2] gi|40218269|gb|AAR83055.1| Gp39 [Klebsiella phage phiKO2] Length = 202 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 11/186 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET G + D + + + + E + PEA I IT Sbjct: 22 VIIDTETTGL-MDFDEIIEITII--NMRGEIL-----LNSLVKPSRPIPPEATKINHITN 73 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + ++ + + + +N+ ++ F+D + Sbjct: 74 EMVADAP-TWSDVFPAVLKII--WKYKWLAWNSSFDARLMVQSCLKTWFFDDLKPHRITS 130 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + A + ++ + L A +G+ AH A AD L Sbjct: 131 IIMAIETRHIDAKAVYDQWYGEFDEKRKNFKRQSLATAAARHGVSTAGAHRALADCLMIL 190 Query: 186 ALVWLI 191 ++ I Sbjct: 191 GVLNQI 196 >gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 201 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G A R + A V + +E + + Sbjct: 1 MERIAVIDFETTGISPGAGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + +F + +N FD + R Sbjct: 57 TGITTAMLRSAP-PVDKVMNEVAEFV---GETPLLAHNAAFDQKFWDYELARIGRS---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 +F+ + A + KL L G + NAH A A Sbjct: 109 ----------------RSQSFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGNAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L+ + + Sbjct: 153 DAEMAANLMQHLAGVLREQH 172 >gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 212 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 47/195 (24%), Gaps = 30/195 (15%) Query: 7 IYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D+ET G R + A V + + P+ +TGI+ Sbjct: 15 VIDFETTGLSPGIGCRATEIAVVLL-ENGRVAGRFQSLM---NAGVRVPPDIERLTGISN 70 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +A R +F + +N FD + Sbjct: 71 AMLKAAPPADA-VMREAAEFV---GDTPLVAHNAAFDRKFWDYEL----------GQFGR 116 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184 R D + P KL L G+ AH A AD Sbjct: 117 TRRQDFACTLLLARRLLPAAPN----------HKLGTLTRWAGLPATGQAHRALADAEMA 166 Query: 185 LALVWLIREKKPKLF 199 L+ + Sbjct: 167 ANLMAHLTRVLRVQH 181 >gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] Length = 232 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 50/186 (26%), Gaps = 30/186 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D A DR + V + + + P D A I GIT Sbjct: 6 IVLDTETTGLDAASGDRIIEIGCVEL-VDFVMTGQVFHKYINPERDIPI--AATKIHGIT 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + + F ++ +N FD + R Sbjct: 63 TDMVKNMPK-FAEMADQFLNFVQDS---VLVIHNAGFDLKFIETEMERIGKTKLYN---- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L+V R + P L L I + H A D Sbjct: 115 --PVVDTLEVARRKFPGMPA--------------SLDALCKRFDISTSSRRFHGALKDAT 158 Query: 183 ATLALV 188 + Sbjct: 159 LLARVY 164 >gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1010 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 29/222 (13%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70 ET G D+ + V+V E E + + + V +TGIT + + Sbjct: 2 ETTGLYKYSDKITEIGAVKV-ENGEITEVFNEL---VNPEKMIPEKVVELTGITNEMVMD 57 Query: 71 DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130 ++ E + +F + +G N + S+ D Sbjct: 58 KPKID-EILPKFLEF--SKDAYFVGQNTDFDIGFVKEA--------CDNLSYQFEPIYLD 106 Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWL 190 L + RA++ F L LA + N H A D T + Sbjct: 107 TLPMARAVF-------------PSMGRFSLDKLAKKLAVGPFNHHRASDDAMTTAKVFIK 153 Query: 191 IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232 + EK + N ++ I + Sbjct: 154 LFEKIKDKNKD-LSLSKINSIKTKWPISRHENFSSIIFAKNY 194 >gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group] Length = 901 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 28/210 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G +R +FA VR D + + ++ GI Sbjct: 700 TILVFDIETTGFSRRYERIIEFA-VR-DLMG---GKNSTIQTLINPEREI--KNAYVHGI 752 Query: 64 TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + + EF + Q+ + + +N FD + F R+ + Sbjct: 753 SSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEM 812 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 D L + R + S + S L +L I +AH Sbjct: 813 -----PGDWLFVDTLPIARQL---------IGSDGEKLKSVSLDNLREHYKIPLAGSAHR 858 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206 A DV ++ + + L + Sbjct: 859 AMQDVITLCYVLQKLTFELKLTVPQLLERS 888 >gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201] gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila DC2201] Length = 232 Score = 83.3 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 22/183 (12%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GRD R + V V + ++ E EA + G++ + Sbjct: 15 FDLETTGRDPQQARIVTASVVLVSPAGDVLQEWEWLA---DPGVEIPEEAAAVHGVSTDR 71 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G AE + + + + + N +D R+ + Sbjct: 72 ARAEGRPVAEVAAELSEVLAGFWREGVPVLAFNAAYDLTVLTRETERHGLPAPE-----P 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D + + ++ + L L G+ AH + D AT Sbjct: 127 FPVLDPFVLNKQVHRYR------------RGKRTLGALCEEYGVVLDAAHTSAEDALATE 174 Query: 186 ALV 188 L Sbjct: 175 RLA 177 >gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53] gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53] Length = 1451 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 64/480 (13%), Positives = 143/480 (29%), Gaps = 47/480 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET +FA + ++ ++F +T IT Sbjct: 411 YVVFDIETTSLSAYHGEIIEFAATII-ENKAVVDKVDIF---IKSKEKLSHFTTRLTSIT 466 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + G+ E ++I+ + + +N FD + F +N + + ++ + Sbjct: 467 NEMLDQKGIELKEALQKIYDVLNNN---VAVAHNANFDYNFLIEKFDQNNMQAPKCTFID 523 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L R + + D + + + A D+ Sbjct: 524 SLVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATLKLKDIKQI 583 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L K LF + ++ ++ + LV ++ + T AP Sbjct: 584 SNFQELSEYKSDALFSKYFSLYINTVVKNQAGLKELFQLVSIAN------TKTFYGAPKI 637 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + K S ++ +L L S + V I+++ + P Sbjct: 638 FWSTLKSFKNILVGSNGVQ-------GELFDILLLSSRQR---VEKYIQKLDYIEIP--- 684 Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLL-----RQQTNLRDRFKAIYNKPYTSSSQDVD-- 357 + +R + + LE+L +L + + + Y V Sbjct: 685 -HPDLFDSYLDRNQLTKDQLLESLQILISLAKKHNKLIISTAEPRYRHKGDREIFKVLTS 743 Query: 358 -------SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410 L++ + +++ D+ L E N H Sbjct: 744 FPIRDKRHFLWNYKAVKAGNYSVPNFYFLTTDEMLDAFSFLKDKSLIE----DIVVNNAH 799 Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL-QWVIP 469 L+ ++ E K L I+ L+ L + + E L + + + + +IP Sbjct: 800 KLNNLIDENI-EVIKTDLYPPSIKNSSELLKDLVYKNAKKKYGEVLPKLVQDRIDKELIP 858 >gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae L20] gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 257 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 57/216 (26%), Gaps = 30/216 (13%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F D EA+ + Sbjct: 10 VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V AE + +F I +N FD + F + Sbjct: 67 HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLGNPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L V R +Y L L GI++ H A Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L + L Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATATHENVADL 202 >gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] Length = 244 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 26/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G +V R + V + + + + +P + DP A+ + GIT Sbjct: 4 VVLDTETTGLEVTQGHRIIEIGCVEL-VNRKLTGNHYHQYVQPQRE--IDPGAMEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + F I +N FD + R Sbjct: 61 PDFLADKP-TFDRVADEFLAFIDGAELII---HNAPFDVGFIDAELDRL----------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 G R + D R + + P + L L G+++ H A D Sbjct: 106 GARRTAVADHCRVTDSLVLARRKHPGQ-----RNSLDALCQRYGVDNSTRTLHGALLDAE 160 Query: 183 ATLALVWLIREKKPK 197 + L+ + Sbjct: 161 ILADVFLLMTGGQTS 175 >gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 204 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVELFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806] gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis] Length = 1438 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 61/469 (13%), Positives = 125/469 (26%), Gaps = 48/469 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I+D ET G + D + V I+ E + +T IT Sbjct: 394 FSIFDLETTGLNPIFDEIIEI-FVLKYSSGTVIDHYYSLIRCNKKLRK---EIINLTHIT 449 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K G + + + F S T +I +N I FD + + ++ + Sbjct: 450 EEKLNMSGRDKLTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLDNP--- 504 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--LANGIEHVNAHDAKADVY 182 +LD +R A + S+ L +A ++ + H+++ D Sbjct: 505 ------ILDTLRLCKAL--------EEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTR 550 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS------- 235 + ++ L Y Y L D + + + +++ Sbjct: 551 CLAKMWEFWSQQLIDLSLDPYTYDGLVNLNSSFDKDKLLRNYFGNNVIIFAKNQKGLKSL 610 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 + H K + + L S + + ++ ++ Sbjct: 611 YELVSIAHTEHFVDKPRLKWDAIETRRENLIVLSSPTNSALVNAVLNDEFDTFKKEGEKF 670 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 P + F G + L+ + + Sbjct: 671 DYISLPPPSNFSHEISRGFFEDGEV-ETLLKTFYEWADNCQFKLIANYCLKYQDFKEVEQ 729 Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415 ++ + L + + R A +LSEK Sbjct: 730 YKVLVHAKSIGGKRHYLYSSKHGNDV--LPDYSWRTT--------ERLIAEYDFLSLSEK 779 Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464 EK+D + L S + L+ G + + EY+ Sbjct: 780 EKEDLFFTYRYELANSVSPDIFVNKSELAI-----PKIPGALENIKEYI 823 >gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 189 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 10/175 (5%) Query: 8 YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G A DR + A V +D ++ P AV + GIT Sbjct: 2 VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSL-VDPRRGT----GAVHVHGITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V+E E + Q + ++ +N+ FD + + + ++ + Sbjct: 57 MVEGAPVIE-EVLDEVWQRIA---GRVLVAHNVSFDLRFLKVLPGSHWLTEALCTQQLAP 112 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + A + +L ++ HD+ Sbjct: 113 DLIPGGKWTLGACCQRAGIPFSNAHAALADARATAELFRFYLGRGLSWHDSLDRA 167 >gi|254490869|ref|ZP_05104052.1| exonuclease superfamily [Methylophaga thiooxidans DMS010] gi|224464041|gb|EEF80307.1| exonuclease superfamily [Methylophaga thiooxydans DMS010] Length = 240 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 18/196 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D + F V + I ++ + + + E++ IT Sbjct: 50 FVALDFETTGLDPRYNEIVSFGLVPFTLRG--IRPSDGHYQVVKPNCVLSEESIAFHRIT 107 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + + + + CI+ + + + R F D Sbjct: 108 HSQVDTAPPLE----KVLDELLGRLSGCIVVVHYQQIE---------RPFLDLACRKLWG 154 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDD---GATSFKLQDLALANGIEHVNAHDAKADV 181 + + L+D M + G + + S +L D G+ +AH AK D Sbjct: 155 EHCLFPLIDTMAIEARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLPSYSAHHAKVDA 214 Query: 182 YATLALVWLIREKKPK 197 AT L + Sbjct: 215 MATAELFLAQVARHYS 230 >gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1] gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 498 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 57/207 (27%), Gaps = 25/207 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G D R Q AGV + R + + F P+++ I GIT Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDE--SFESLVHPGMSIPPDSIRIHGITD 73 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 F+ F + + FD R Sbjct: 74 GMLREAPA----FAAVWRSFEMFRGVRPLIGYAVGFDLAIIEREAARAGIR--------- 120 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R L V + D L+ LA G E + H A D A Sbjct: 121 RKRPRTLCVRTLSRIVNRDL----------RGHSLEALAAWLGFEIIGRHQALDDAMAAA 170 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLR 212 + + + + + + L+ Sbjct: 171 KVFTGLLPRLQAMGIRTFAEAERASLQ 197 >gi|256827805|ref|YP_003151764.1| exonuclease, DNA polymerase III, epsilon subunit family [Cryptobacterium curtum DSM 15641] gi|256583948|gb|ACU95082.1| exonuclease, DNA polymerase III, epsilon subunit family [Cryptobacterium curtum DSM 15641] Length = 1043 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 62/228 (27%), Gaps = 36/228 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D Q A R+ + + ++ F E +T Sbjct: 35 KDIVVIDTETTGISFVRDELTQIAAARM-VEGKIVDWFVTF---VNPGRPIPEEISHLTS 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I E + Q + +N FD ++ W Sbjct: 91 IYESDVADAPSPE----EAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIW-- 144 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D LD+ R S +L DL A H A ADV Sbjct: 145 ------IDSLDLARIA-------------LPRLKSHRLLDLVRAFDAPLST-HRADADVE 184 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 A A+ ++ + + L D + P VHV F Sbjct: 185 ALCAVFRILLAAVDAMSQGLIDEIAAMATEEEW------PTVHVFKQF 226 >gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium chloromethanicum CM4] gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium chloromethanicum CM4] Length = 236 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 26/186 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V +++ E F A + GI+ Sbjct: 5 IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+ + F + + +N FD + F R Sbjct: 62 DAMLADKPV----FAEVVDAFLEFCSDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + + L L G++ H A D Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161 Query: 183 ATLALV 188 + Sbjct: 162 ILAEVY 167 >gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 240 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 32/253 (12%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 N V+ D ET G + R + V + + F D PE Sbjct: 10 NRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E++ +F + +N FD + F + D Sbjct: 67 AIQVHGITDEFLVDKP----EYASIHQEFLDFIKGAELVAHNASFDTGFMDYEFEK--LD 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 121 PTIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGAS 233 H A D + L+ + L +R++ + + L + A Sbjct: 167 HGALLDAEILADVYLLMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRATADELEAH 226 Query: 234 RSNTALIAPVAWH 246 + L+ WH Sbjct: 227 QKRLELVNDCIWH 239 >gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18] gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18] Length = 835 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 26/185 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G ++ D+ + VR+ R K+++ ++F E+ I Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRG--KVQNADIFHTLVNPGRHIPAESTAFHRI 698 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E + F ++ +N FD Sbjct: 699 EDHMVADAP-SMNEVYPQ---FVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENP-- 752 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G L +A GI H + D A Sbjct: 753 -----------------ILDTLFLSVGLHSGTEGHSLDAMAQRMGIAIEGRHTSLGDARA 795 Query: 184 TLALV 188 T + Sbjct: 796 TAQIF 800 >gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 56/190 (29%), Gaps = 19/190 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D + A +RV Q E V +P DPEA+ + Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + V + + ++ +N+ FD + + + Sbjct: 61 GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDCVGHRP---- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N LD + G S L + G+ H A DV Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161 Query: 182 YATLALVWLI 191 A+L + + Sbjct: 162 RASLGVAQRL 171 >gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 239 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 39/232 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G D DR + V E I+ F + A I Sbjct: 10 VVLDTETTGLDPDGGDRVIEIGCV------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT +E + + +F I+ +N FD + + R S Sbjct: 64 GITIDMLKDKPK-FSEIADKFLEFIDNG---ILVIHNAGFDIKFIKMELDR-----INKS 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 +++ D L + R + S L L I + H A Sbjct: 115 YNSDFQVVDTLVLARKKFPG--------------VSSTLDALCRRFNISLQDRKFHGALL 160 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 D L+ + + + ++ N + +I + + Sbjct: 161 DA----TLLGKVYVQLMGGLQRSLEFSYNNNVSSASNIDKRCENLCIEPRIY 208 >gi|221633099|ref|YP_002522324.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156634|gb|ACM05761.1| DNA polymerase III epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 228 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 59/200 (29%), Gaps = 15/200 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D E G D D VR+ + F+ ++V + GI Sbjct: 33 YTVLDAEMTGLDPERDELLALGAVRMVGTRLLLG--ASFYQLIRPQRQGWGQSVTVHGIR 90 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + +E + + +F + I+ + + D + + R R W Sbjct: 91 PVDVVGAPPLE----QVLPEFVRFCASSILVGHGVEIDRKFLQRAAARCGLSWPRTYW-- 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D R + P F L+DL A IE H A AD + T Sbjct: 145 -------VDTGRVARWLTSHHGALPEAAADRGRFSLEDLLAAYEIEPPARHHALADAFVT 197 Query: 185 LALVWLIREKKPKLFEYLYD 204 + + Sbjct: 198 ALVWQRQLTELATEGVRTLR 217 >gi|126010887|ref|YP_001039857.1| putative exonuclease [Vibrio phage VP882] gi|123203897|gb|ABM73410.1| putative exonuclease [Vibrio phage VP882] Length = 206 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 25/188 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N+ +I D ET G D + + + + D + +A I Sbjct: 11 LANNALILDTETTGLD-SKAEIIEISII--DCAGNVL-----LDTLVKPTAPIPEDATRI 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ YN +D R RN Sbjct: 63 HGITNEMVANAP-TWPEVYDLFVPLVE--GRELVIYNA-DYDLRMIRQADERNDL----- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 N ++ D + A + QW +L + A G + AH A A Sbjct: 114 --LNIRTQADCAMLAYAEF-----YGQWDDYRGQWKWQRLGNAAKQQGVVIEGKAHRALA 166 Query: 180 DVYATLAL 187 D TL + Sbjct: 167 DCQMTLGV 174 >gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] Length = 259 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 14 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + +F + +N FD + F D + Sbjct: 71 HGISDEFLADKP-SFADITPEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + +++N + Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNDSSE 205 >gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus A6] gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 236 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 64/194 (32%), Gaps = 22/194 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GR+ R + VD + E I E EA + G+T ++ Sbjct: 12 FDLETTGRNSRAARIVTASVTVVDHRGEVIREHEWLA---DPGVEIPTEASDVHGVTTEQ 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +DG E +R + + N +D R Sbjct: 69 ARKDGRPAHEVTRELAAVLQELFDTGVPVIAFNASYDFTVLAAESARYGVPQL------- 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +R+ +LD P + L L G+ NAH + AD ATL Sbjct: 122 -TRFPVLD---------PYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATL 171 Query: 186 ALVWLIREKKPKLF 199 ++ + K PKL Sbjct: 172 KVLDAMAGKFPKLM 185 >gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] Length = 1010 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 52/380 (13%), Positives = 106/380 (27%), Gaps = 32/380 (8%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70 ET G D+ + V+V E E + + + V +TGIT + + Sbjct: 2 ETTGLYKYSDKITEIGAVKV-ENGEITEVFNEL---VNPEKMIPEKVVELTGITNEMVMD 57 Query: 71 DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130 ++ E + +F N FD + + S+ D Sbjct: 58 KPKID-EILPKFLEF---SKDAYFVGQNTDFDIGFIKEACDNL-------SYQFEPVYLD 106 Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV-W 189 L + RA++ F L LA + N H A D T + Sbjct: 107 TLPMARAVF-------------PSMGRFSLDKLAKKLAVGPFNHHRASDDAMTTAKVFIK 153 Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRY 249 L + K K + N + + I + + + ++ +I+ Sbjct: 154 LFEKIKDKNKDLSLAKINSIKTKWPISRHENFSSIIFAKNYQGLKNLYKIISDSRMKYFN 213 Query: 250 KDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE--LKGLVPVPIKEVHLNKCPILMPID 307 ++ +L + + S LF + + + + + + L Sbjct: 214 LEAKTPFDLVRKNKEGLIIGSGGKDGLLFKAIRDDYSEEKIDKICEFFDFFQIEALGVFA 273 Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFAD 367 + R + + L + + + + + + L+ G F Sbjct: 274 DDLENGSIRNKEQIIEINKKIIELGK-KHDKLVVATGSVRYMEKKDYVLRNILHKGQFFH 332 Query: 368 VDRQIMDRILRTAPEQLSTL 387 L+T E L Sbjct: 333 YRENNPLYYLKTTNEMLDEF 352 >gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis FRI909] Length = 902 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 30/232 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + D Q V + + I++ D P +T I Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQN-QVIDTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + ++ E + I+Q C+ +NI FD + + F + Sbjct: 61 EEEMLVQAPY-FNEVADDIYQLIKD---CVFVAHNISFDLNFIKKAFEKCNI------QF 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ + S++L LA ++ I NAH A D Sbjct: 111 KPKRVMDTLEL-------------FKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 T L+ + K + D + + ++ ++ ++ Sbjct: 158 T---AKLMIKAFEKFEQLHLDTQKQLYYLSKNLKYDLYHILFEMVRNYQTKP 206 >gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96] gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96] gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163] Length = 252 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 60/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 10 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLIDPEAFGV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L F++ F + N + +N FD + F + + Sbjct: 67 HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 123 E--TFCKITDSLAMARKLFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + L + R K Q Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGEREKQQ 198 >gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] Length = 241 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 +++D ET G + R + V + + F D DPEA Sbjct: 6 QRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEI-INRKLTGK--TFHVYIKPDRPIDPEA 62 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + + A+ + F + + +N FD + F D Sbjct: 63 IDVHGITDEFLIGKP-SYADIHQEFIDFI---DGAELVAHNASFDIGFMDYEFQLMGSDL 118 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175 + + D L++ + ++ L L GI+ H H Sbjct: 119 KKTE--DICKVTDTLEMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162 Query: 176 DAKADVYATLALVWLIREKKPK 197 A D + ++ + Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184 >gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] Length = 243 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 26/193 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + R + GV + + F C + D A+ I G++ Sbjct: 4 IILDTETTGLEPKEGHRIIEIGGVELSC-RRRTGR--TFHCYLNPEREVDKGALKIHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + F + +N FD + + S Sbjct: 61 NEFLSDKPR-FIEIAEEFLAFIEGAE---LVIHNAPFDVGFLDHEL--CLLGSKWGKIST 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R + + L L GI++ + H A D Sbjct: 115 DCQVLDTLQLARQRHPGQKN--------------NLDALCKRYGIDNSRRDLHGALLDAE 160 Query: 183 ATLALVWLIREKK 195 + + + Sbjct: 161 ILAGVYLAMTGGQ 173 >gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] Length = 454 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D E+ G + + A + D E ++ + V +TGI Sbjct: 2 YAILDIESTGGKYNEEGITEIAIYKFDGN-EIVDQFISL---INPERKIQSFVVGLTGIN 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++RI + C I +N +FD + F R Y Sbjct: 58 NEMLHQAPK-FYEIAKRIIEITE---GCTIVAHNAKFDYRMLKLEFDRLGY--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S+ L L GI + H A D AT Sbjct: 105 -----------LYERKTLCTVKLSKKLLPDFESYSLGKLVKKLGIPITDRHRASGDALAT 153 Query: 185 LALVWLIREKKPK 197 + L L+ EK Sbjct: 154 VKLFKLLLEKDTD 166 >gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 336 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + + P P V+I G+T Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTTVNPERDPGP--VWIHGLT 75 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + + ++ +N FD + R + Sbjct: 76 SEALEGAPLFH-EVAGEFAARLT---GRVLVAHNAVFDWSMIAREYARAGQEPPVRQ--- 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + +A+ + KL+ LA G+ AH A D Sbjct: 129 ---RLCTIALSKALAL-------------PLPNHKLETLAAHFGVVQRRAHHALDDARVL 172 Query: 185 LALVW 189 Sbjct: 173 AEAFR 177 >gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5] gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5] Length = 249 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56 M N V+ D ET G V R + V E I F D D Sbjct: 1 MANRSVVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEG 54 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + AE + F I +N FD + N F Sbjct: 55 AIGVHGITNEFLVGKPR-FAEVADEFFDFIQGAQLII---HNAAFDVGFINNEFALMGQH 110 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + D L + R + + L L G+++ Sbjct: 111 ERADI-TQHCTILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGREL 155 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + + + Sbjct: 156 HGALLDSEILADVYLTMTGGQTS 178 >gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] Length = 330 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 39/335 (11%), Positives = 96/335 (28%), Gaps = 27/335 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G +VA DR + + ++ + +V + + + + Sbjct: 5 LKRPLAFFDLETTGVNVASDRIVEISILKAMPDGSE----QVKTMRINPEMPIPLSSSLL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+ + + ++ I F +T + GYN+ +FD F R + Sbjct: 61 HGVYDEDIKDAP-TFKQVAQEIADFLE--DTDLAGYNSNKFDIPVLMEEFLRAGIN---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + ++K NAH A+AD Sbjct: 114 -----------FDIENRKFVDVQNIFHQMEQRTLKAAYKF-----YCDRTLENAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V AT ++ ++ + ++ +D + ++ F Sbjct: 158 VRATYEVLLAQVQRYDGVEWEDKSGNKSIPVKNDVDALHRFTNLNRPVDFAGRIIYDENG 217 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300 V ++K + + + + +++ N Sbjct: 218 VEVFSFGKHKGKSVVEVFKIEPSYYSWMMQGDFPLYTKRCIEKIWTDFRNIQHNRGANVK 277 Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335 P + + G ++L +++ Sbjct: 278 PSNASDVAIQPKTKPYGGNKPYSGNQHLDKAKEKK 312 >gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] Length = 902 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 30/232 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + D Q V + + I++ D P +T I Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQN-QVIDTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + ++ E + I+Q C+ +NI FD + + F + Sbjct: 61 EEEMLVQAPY-FNEVADDIYQLIKD---CVFVAHNISFDLNFIKKAFEKCNI------QF 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ + S++L LA ++ I NAH A D Sbjct: 111 KPKRVMDTLEL-------------FKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 T L+ + K + D + + ++ ++ ++ Sbjct: 158 T---AKLMIKAFEKFEQLHLDTQKQLYYLSKNLKYDLYHILFEMVRNYQTKP 206 >gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix] gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix] Length = 238 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 55/193 (28%), Gaps = 24/193 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + + +D + D D A+ + GIT Sbjct: 4 IVLDTETTGLEPSEGHRVIEIGCLELD-NRRPTGRKLHEY--LQPDREIDAGAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + +F + +N FD + + + Sbjct: 61 NEFLADKPR----FADVVGEFIEFVRGAELIIHNAPFDVGFINHELRLLGEAAPVTELVE 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R ++ + + L L I+ H A D Sbjct: 117 VCTVLDSLVMARRMHPGTRN--------------SLDALCKRYEIDASGRTLHGALLDAE 162 Query: 183 ATLALVWLIREKK 195 + + + Sbjct: 163 LLADVYLAMTGGQ 175 >gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 930 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F + D ET G DR QF V + E +++ +T Sbjct: 8 ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + ++ +I + + +N+ FD + +++ Sbjct: 64 GIDQKMVADQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL--- 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + + S+KL+DL + I+H N H A +D Sbjct: 117 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 160 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 Y T L+ I +K L + + Sbjct: 161 YGTAVLLLKIIDKLASLPQATLN 183 >gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 242 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + + D EA+ Sbjct: 11 VILDTETTGMNQGAGAIYLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQIIDEEAIE 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + AE S+ F + + +N FD + + F + Sbjct: 68 VHGITNEYVANKPK-FAEISQSFIDFI---DGAEVVAHNASFDVNFMDHEF--SLLQPRG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D LD+ + ++ + L L GI++ H A Sbjct: 122 PKTADICQILDTLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLMMTGGQTKF 188 >gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506] gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506] Length = 232 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + + +I + + F + EA + G++ Sbjct: 4 IVLDTETTGLNPLTGDRLVEIGCVEI---FNRIPTGQTFHVYLNPERDMPLEAFNVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ + F + + +N FD + R + + Sbjct: 61 AEFLSDKPL----FAAVVDDFLAFIAGDPLVIHNAAFDIGFINAELARLARPALTF---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + + S +L DL GI+ H A D Sbjct: 113 -DRVVDTLSLARRRHPGA--------------SNRLDDLMNRYGIDGSRRTKHGALLDSE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLADVY 163 >gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430] gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946] gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946] gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430] gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC BAA-2158] Length = 249 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 62/218 (28%), Gaps = 30/218 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 10 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLIDPEAFGV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L F++ F + N + +N FD + F + + Sbjct: 67 HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 123 E--TFCKITDSLAMARKLFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 D + + + L + R K Q + I Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGEREKQQDGETIQ 204 >gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 1482 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 38/230 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G LD +F + + + + + ++ +T IT Sbjct: 436 VFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDIL---IKPKTKLKAFTQKLTNITE 492 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + ++I++ I+ +N FD + + Y + Sbjct: 493 KMLEDKPSIE-QAFKQINEIIKD---AILVAHNANFDFTFLSYWSEKLGYSKLENT---- 544 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183 D L + R IY S +L LA I + AH D Sbjct: 545 --IIDTLTISRIIY-------------PDLKSHRLGSLAKRVNISYDPSIAHRGDYDADI 589 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + + + + R K ++ D + P+ + + Sbjct: 590 LADIYERMLD----------ETRKKIKIITDSDWNKIDPINYADNLNYYK 629 >gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 238 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 60/196 (30%), Gaps = 27/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D R + V V+R+ + F + EA+ + GI Sbjct: 4 IVLDTETTGIDPKEGHRVIEIGCVELVNRKL----TGNHFHVYINPGRQIEQEAIDVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + F + +N FD + + F + Sbjct: 60 TNEFLTDKP-TFRDVAEDFVNFIR---GAQLVIHNAPFDVGFMDHEFGMEPKTRGVIT-K 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 + S D L V R ++ + L L GI+ H H A D Sbjct: 115 DICSVLDTLAVARKMHPGQKN--------------NLDALCKRYGIDNSHRELHGALLDA 160 Query: 182 YATLALVWLIREKKPK 197 + L+ + K Sbjct: 161 EILADVYLLMTGGQTK 176 >gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1960 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 53/214 (24%), Gaps = 23/214 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +++D ET G + + A D + + Sbjct: 249 PTIIVFDIETTGFLKPGSKIVELAC--RDIAG---GDCSTLETLVNPYQPVPIASTAVHK 303 Query: 63 ITPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 IT + RD + E F + ++ +N RFD + Y + Sbjct: 304 ITSEMVNRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSME 363 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + DL M +KL L +AH Sbjct: 364 IPSHWYFIDT--IDLAKAMLKKRFGKTKLYNLQFLYYD--CYKLPRL--------EDAHR 411 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A DV ++ + + L D K Sbjct: 412 AGVDVDMLASVFGKLLMELEMPVSELLDQAFKAS 445 >gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] Length = 456 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 29/209 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + + + + + V +++ E +TGI+ Sbjct: 3 YAVVDIETTGGHASGNGITEIS-ILVHNGHSIVQNYETL---INPGQYIPAHIEALTGIS 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++Q I +N+ FD + R+ Y+ Sbjct: 59 NEMVETAP-SFNQVAAEVYQLLHDK---IFVAHNVNFDFSFIRHQLGVCGYELSCRK--- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L A I N H A D AT Sbjct: 112 -------LCTVRMSRKI----------IPGHRSYSLGKLCAALNISLNNRHRAGGDAAAT 154 Query: 185 LALVWLIREKKPK-LFEYLYDYRNKNQLR 212 L+ L+ +K + + + +K Q Sbjct: 155 AELLTLLLDKDSEGIIQQSLKVSSKEQAL 183 >gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] Length = 204 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVELFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KLEQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617] Length = 252 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 62/218 (28%), Gaps = 30/218 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 10 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLIDPEAFGV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L F++ F + N + +N FD + F + + Sbjct: 67 HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 123 E--TFCKITDSLAMARKLFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 D + + + L + R K Q + I Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGEREKQQDGETIH 204 >gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 257 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 58/216 (26%), Gaps = 30/216 (13%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F + EA+ + Sbjct: 10 VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V AE + +F I +N FD + F + Sbjct: 67 HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L V R +Y L L GI++ H A Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L N + L Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATSNHENVADL 202 >gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS 2060] gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS 2060] Length = 238 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 64/238 (26%), Gaps = 25/238 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G D DR + G+ I + F A + G++ Sbjct: 5 IVLDTETTGTDAKTDRLIEIGGI---ELLNHIPTGREFHRYINPQRAVSQGAFAVHGLSD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + F+ + F +N FD + + R Sbjct: 62 AFLADKPL----FAEILPDFLDFCGDATFVIHNAAFDVGFLNAEYARLG--ETAPPPIEL 115 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 ++ D L + R + + L L GI++ H A D Sbjct: 116 SAVVDTLALARRKHP--------------NAANNLDALCARYGIDNSRRTKHGALLDAQI 161 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + + K + + ++ + P S + A R+ A Sbjct: 162 LAEVYIELLGGKQTSLGLTLEAASIVRVTQEAGPVAHGPRSVRSRLTDAERTAHAAFT 219 >gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] Length = 259 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 30/204 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 14 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + AE + +F I +N FD + F D + Sbjct: 71 HGISDEFLADKP-TFAEITPEFLEFIRGAELII---HNAAFDIGFMDYEFRMLQQDIPKT 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 127 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + L + Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSM 194 >gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 1482 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 38/230 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G LD +F + + + + + ++ +T IT Sbjct: 436 VFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDIL---IKPKTKLKAFTQKLTNITE 492 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + ++I++ I+ +N FD + + Y + Sbjct: 493 KMLEDKPSIE-QAFKQINEIIKD---AILVAHNANFDFTFLSYWSEKLGYGKLENT---- 544 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183 D L + R IY S +L LA I + AH D Sbjct: 545 --IIDTLTISRIIY-------------PDLKSHRLGSLAKRVNISYDPSIAHRGDYDADI 589 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + + + + R K ++ D + P+ + + Sbjct: 590 LADIYERMLD----------ETRKKIKIITDSDWNKIDPINYTDNLNYYK 629 >gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] Length = 456 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITG 62 HFV D ET + Q VRV + + + C+P D + I G Sbjct: 112 HFVGVDVET--ANADWGSICQIGVVRVTDGMQV--DSHEWLCQPPAGIDHFDEGNIRIHG 167 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP +F+ + + ++ +N +FD + W Sbjct: 168 ITPDMVTDAP----DFATVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWK- 222 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 F+ + G TS +L +A G+E N HDA AD Sbjct: 223 ------------------FACSLAASRAAKLGITSHRLPVVAQHLGVELDNHHDAVADAR 264 Query: 183 ATLALV 188 A + Sbjct: 265 ACAGIF 270 >gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC 12478] Length = 680 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 37/210 (17%) Query: 4 HFVIYDYETFGRDVAL---------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 FV+ D E D + V+V R + Sbjct: 56 TFVVVDLE---TTGGRTTGTEAAPPDAITEIGAVKV-RGGTVLAEFATL---VDPQRSIP 108 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P+ V +TGIT V+ A + FF + +N FD + R + Sbjct: 109 PQIVQLTGITTAMVRDAPVISA----VLPMFFEFAGNSVFVAHNAGFDIGFLRAAARQCD 164 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 R +L +R + A S +L +LA + Sbjct: 165 I---------TWPRPKVLCTVRLARRVL--------SREEAPSVRLAELARLFSVATQPT 207 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYD 204 H A D AT+ ++ + E+ + + Sbjct: 208 HRALDDARATVDVLHALIERVGNQGVHTFA 237 >gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] Length = 1452 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 68/217 (31%), Gaps = 30/217 (13%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + + + +P +P Sbjct: 2 YIIFDTETTGLPKRWNAPITDTDNWPRAIQIAWQVHDEWGNLV-KAKDYLIRPEGFDIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ AL+ G ++ S + N+ FD F+R Sbjct: 61 -DAERIHGISTALALQKGESLDMVLAEFNEALSESK--FVVGQNVGFDVNVMGAEFHRAQ 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 + S + V+ + Q P G FKL L G Sbjct: 118 LE----------SLMASMPVLDTCTEKTAKLCQIPGGRGGK--FKLPTLTELHQYLFGQP 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 AH+A ADV AT + L R+ Sbjct: 166 FNEAHNATADVEATTRCFLELIRTGNYTENELQAERS 202 >gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 242 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + D EA+ Sbjct: 11 VILDTETTGMNQAGGPIYVGHRIIEIGCVEV-INRRLTGR--TYHQYINPGQAIDEEAIQ 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + + + ++ F + I +N FD + + F + + Sbjct: 68 VHGITNDRVANEPRFH-QIAKDFIDFI---DGAEIVAHNANFDVSFMDHEFSK--LNPIG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + S D L + + ++ + L L GI++ H A Sbjct: 122 PKTKDICSILDSLAIAKRLHPGQKN--------------NLDALCRRYGIDNGRRTYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLIMTGGQIKF 188 >gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] Length = 489 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 60/385 (15%), Positives = 113/385 (29%), Gaps = 34/385 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F I D ET Q + + W+ I + + + V +TGI Sbjct: 6 TFSIVDLETTAPFKEGGHIIQIG-ISFVKNWKIINNFQT---MVNPGVKIPEQIVDLTGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + +R IH S + +N+R+D Y F R Sbjct: 62 KNEDVENAPYFE-DLARMIHDQLS---GTVFVAHNVRYDFPYLNGEFARIKMR------- 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R + +D ++ P S+KL +L GI H A D A Sbjct: 111 --RLRLEYVDTVQLAQIVFPTMN----------SYKLDELVSKLGINLPRHHRADQDASA 158 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L I E + + + + L + + + L F R IA + Sbjct: 159 TAQLFLKIHEHLQEFPQNTLNNLINHSKSLLGNTETIFQLSKGKRTFPGDRYGPFDIARL 218 Query: 244 -----AWHPRYKDSVIGCNLSGD-MRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 ++ ++ +LS A L + + Sbjct: 219 KKIDKGQLIKWIEAKKQSSLSKPLPATVLRPRQESFANILQSKITGKNNKIFSVFSRPRF 278 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 K + + + I + L + ++ +L K ++ P T Sbjct: 279 GKTNAYLDLAVKIAAKGYKILIIEENYLRRRSTFQKSQSLFPENKDLFQIPITRKDFVSL 338 Query: 358 SQLYDGFFADVD-RQIMDRILRTAP 381 +L D F + + + + ++ + Sbjct: 339 DKLADAFLTEDNPSRQLAKLRVISW 363 >gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1485 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 30/201 (14%) Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + P Q A D + + + + F P +P Sbjct: 2 YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDHKGQLL-EHKDFLITPDGFTIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GI+ + A + GV + + T I NI FD + FYR Sbjct: 61 -DAERIHGISTELATKRGVSIHHVFEEFEKALAK--TQYIVGQNIGFDIHIMGAEFYRYG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 +S L V+ + + + P G FK +L G Sbjct: 118 V----------SSVLSKLPVLDTCTELTAELCRIPGGRAGK--FKYPNLTELHEFLFGTP 165 Query: 171 HVNAHDAKADVYATLALVWLI 191 AH+A ADV AT + + Sbjct: 166 FAEAHNATADVEATARCFFEL 186 >gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str. Bath] gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str. Bath] Length = 267 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 32/199 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAVFIT 61 ++ D ET G D R + V E ++ F + D A+ + Sbjct: 4 IVLDTETTGLDPKAGHRIIEIGCV------ELLDRRITQNRFHVYINPEREIDAGAIEVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V + F S I +N FD + + + R Sbjct: 58 GLTNEFLAGMPV-FRNIADDFLNFISGAELII---HNAAFDVGFLDHEL--SLLGENRGR 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 + D L + R + + L L +++ H A Sbjct: 112 IADYCGICDTLAMARKNHPGQRN--------------SLDALCKRYNVDNSRRELHGALL 157 Query: 180 DVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 158 DAEILADVYLAMTGGQITM 176 >gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134] gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134] Length = 270 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 27/196 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++A DR ++A ++ E E K + E+ + Sbjct: 7 LKNPLVFFDLETTGTNIAKDRIVEWAFIKALPNGEI----EKDVKKINPEMPIPIESSLV 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + ++ + +F + GYN +RFD F R D Sbjct: 63 HGIYDEHVKDAP-TFKSIAKNLVKFLE--GCDLAGYNIVRFDVPVLVEEFLRVGVDF--- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D + + + +AH A+AD Sbjct: 117 -SVNNRKLVDAQKIFFMMEPRTLT----------------AAYKFYCNKSLEDAHTAEAD 159 Query: 181 VYATLALVWLIREKKP 196 ATL ++ Sbjct: 160 TVATLEVLNAQIHHYE 175 >gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 330 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + P P V+I G+T Sbjct: 25 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPQRDPGP--VWIHGLT 78 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + ++ +N FD + R ++ Sbjct: 79 SDVLRDAPL-FPDVAEEFAARL---DGRVLVAHNAVFDWQMIAREYARAEREAPVRQR-- 132 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + A + KL+ LA G+ AH A D Sbjct: 133 -------LCTIALSKALDLPL----------PNHKLESLAAHFGVVQQRAHHALDDARVL 175 Query: 185 LALVW 189 Sbjct: 176 AEAFR 180 >gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] Length = 897 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEEKMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 203 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 51/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 + +F+ + GA + KL L + AH A A Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + Sbjct: 153 DAEMAANLTAYLTNELRNTH 172 >gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces coelicolor A3(2)] Length = 328 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + P P V+I G+T Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPQRDPGP--VWIHGLT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + ++ +N FD + R ++ Sbjct: 77 SDVLRDAPL-FPDVAEEFAARL---DGRVLVAHNAVFDWQMIAREYARAEREAPVRQR-- 130 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + A + KL+ LA G+ AH A D Sbjct: 131 -------LCTIALSKALDLPL----------PNHKLESLAAHFGVVQQRAHHALDDARVL 173 Query: 185 LALVW 189 Sbjct: 174 AEAFR 178 >gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] Length = 229 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 74/251 (29%), Gaps = 32/251 (12%) Query: 5 FVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 V+ D ET G + R + V + + F D PEA+ Sbjct: 1 IVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPEAI 57 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + E++ +F + +N FD + F + D Sbjct: 58 QVHGITDEFLVDKP----EYASIHQEFLDFIKGAELVAHNAPFDTGFMDYEFEK--LDPI 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHD 176 D+ D L + + I+ L L GI+ H H Sbjct: 112 IGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTLHG 157 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGASRS 235 A D + L+ + L +R++ + + L + A + Sbjct: 158 ALLDAEILADVYLLMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRATADELEAHQK 217 Query: 236 NTALIAPVAWH 246 L+ WH Sbjct: 218 RLELVNDCIWH 228 >gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 242 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + R + V V + DPEA+ Sbjct: 11 IILDTETTGMNQAGGAIYIGHRIIEIGCVEV-INRRLTGR--TYHQYINPGQSIDPEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ + + ++ F I +N FD + + F + Sbjct: 68 VHGITDERVANEPRFH-QIAQEFIDFIQGAE---IVAHNASFDVSFMDHEF--SMLQPRG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + D L + + ++ + L L GI++ H A Sbjct: 122 PKTKDITDILDSLAIAKRLHPGQKN--------------NLDALCKRYGIDNSRRTYHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + L+ + K Sbjct: 168 LLDAEILADVYLLMTGGQIKF 188 >gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910] gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910] Length = 254 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 27/200 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 I+D ET G ++ DR + ++V+ S E + + E I G Sbjct: 7 KPLCIFDLETTGTNIGKDRIVEICILKVNPD----ASRESKTWRVNPEMPIPKECSEIHG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + + + +I + S + + G+N+ RFD R D Sbjct: 63 IYDEDVKDAP-TFRDIAAKIMEMIS--GSDLGGFNSNRFDVPLLAEELLRVGMDFDL--- 116 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + G NAH A+ADV Sbjct: 117 -NKFRLVDAQTIFH----------------KKEPRNLGAAYQFYCGKTLENAHSAEADVM 159 Query: 183 ATLALVWLIREKKPKLFEYL 202 AT ++ K + + Sbjct: 160 ATFEVLDAQVGKYDDIPNEI 179 >gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99] gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99] Length = 249 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 62/218 (28%), Gaps = 30/218 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 10 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L F++ F + N + +N FD + F + Sbjct: 67 HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKL------- 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 G ++ D + A + L L I++ H A Sbjct: 116 --QRGIAKTDTFCKITDSLAMARRLF-------PGKRNSLDALCSRYEIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 D + + + L + R K Q + + Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGERGKQQDGETVH 204 >gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 203 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G + R + A V + Q ++ + + Sbjct: 1 MERIAVIDFETTGITPSSSCRATEIAVVML-EQGRIVDRYQSLM---NAGVRVPAFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + +++F + +N FD + R Sbjct: 57 TGISNAMLRSAPSAE-KVMNEVNEFV---GITPLLAHNAAFDQKFWDFELGRI------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + F+ + A + KL L G+ H AH A A Sbjct: 106 -------------KRTRLQNFACSLLLARRLMPAAPNHKLGTLNTFAGLPHTGQAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + + Sbjct: 153 DAEMAANLTAHLASQLRQKH 172 >gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] Length = 900 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 27/194 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D Q + R + I++ D P +T I Sbjct: 5 TYAVVDLETTGNQLDYDEIIQIG-ITFVRNQQIIDTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E + I+ CI +NI FD + +N Sbjct: 61 EEEMLAQAPY-FNEVAEDIYNQIKD---CIFVAHNISFDLNFIKNA-------------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D ++ + S++L +LA ++ I NAH A D Sbjct: 103 -----FDNCNIQFRPKKVMDTLELFKIAFPTDKSYQLSELAQSHNIPLTNAHRADEDATT 157 Query: 184 TLALVWLIREKKPK 197 T L+ EK Sbjct: 158 TAKLMIKAFEKFEN 171 >gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 240 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 32/253 (12%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 N V+ D ET G + R + V + + F D PE Sbjct: 10 NRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E++ +F + +N FD + F + D Sbjct: 67 AIQVHGITDEFLVDKP----EYASIHQEFLDFIKGAELVAHNAPFDTGFMDYEFEK--LD 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 121 PTIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGAS 233 H A D + L+ + L +R++ + + L + A Sbjct: 167 HGALLDAEILADVYLLMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRATADELEAH 226 Query: 234 RSNTALIAPVAWH 246 + L+ WH Sbjct: 227 QKRLELVNDCIWH 239 >gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] Length = 239 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 39/232 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G D DR + V E I+ F + A I Sbjct: 10 VVLDTETTGLDPDGGDRIIEIGCV------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT +E + + +F + ++ +N FD + + D + Sbjct: 64 GITIDMLKDKPK-FSEIADKFLEFVNNS---VLVIHNAGFDIKFIKME-----LDKIQKD 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 +D+ D L + R + S L L I + H A Sbjct: 115 YDSDFQVVDTLILARKKFPG--------------VSSTLDALCRRFNISLQDRKFHGALL 160 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 D L+ + + + D+ N + +I N V + F Sbjct: 161 DA----TLLGKVYVQLMGGLQRSLDFSYSNNIIDTSNINNQCEDVAIEPRFY 208 >gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 252 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 57/201 (28%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 +VI D ET G V R + V E I F D D A+ Sbjct: 7 KRYVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + A+ + +F + +N FD + N + + Sbjct: 61 NVHGITDAFLVGKPR-FADVADEFFEFIQ---GATLVIHNAAFDVGFINNE-FALLGQQH 115 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176 R + D L + R+ + + L L I++ H Sbjct: 116 RADVSQYCTVLDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182 >gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] Length = 257 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + D R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGDQDRSD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITRHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] Length = 247 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 34/240 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V + KP D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRHYHVYVKP--DRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + + F + +N FD + + +R Sbjct: 66 HGISDEFLADKP-TFDQIADEFLDFIRGGE---LVIHNAAFDIGFMDHE-FRLLQQGIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R ++ L L I++ H A Sbjct: 121 TETF-CTITDSLLMARRLFPG--------------KRNNLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYL----YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 D + + + + + + +++++ +V+ S A+ Sbjct: 166 LDAEILAEVYLAMTGGQTSMTFQMEGDTQQTNSAQDIQRIVRPAMAMKVVYASDKELAAH 225 >gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] Length = 237 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 60/196 (30%), Gaps = 16/196 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V +D ET G DV DR A VR+D E + +A I GI Sbjct: 7 TLVGFDLETTGTDVESDRIVTAALVRLDPDGTVAEQ---RTWLLDPGVVIPEQASAIHGI 63 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 A + G A I + + + N R+D R S Sbjct: 64 GTDHARKHGTRAASAVEEIAHAVAEVLRSDVPLVVMNARYDLSLLDRECRRYGLPSVE-E 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +G + ++ + LQ L G+ AHDA AD Sbjct: 123 RVDGAPSPVIDPLVIDKHV----------DKYRKGKRALQALCDHYGVTLDGAHDATADA 172 Query: 182 YATLALVWLIREKKPK 197 A + +V + E+ Sbjct: 173 VAAVRVVRRMGERHRP 188 >gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] Length = 245 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D R + V + F + A + ++ Sbjct: 4 IVFDTETTGLDPLDGHRVVEIGAVEM-VNGALTGR--TFHVYVNPERDMPEAAYRVHKLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + + + F+ ++ +N FD + ++ W+W Sbjct: 61 SQFLADKPIFKDPAIGQ--AFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLP---WAWGE 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA----HDAKAD 180 D L + R + SP L L GI+ H A D Sbjct: 116 PGDIVDTLQIARKRFPGSPS--------------SLDALCQRFGIDLTEREAQGHGALLD 161 Query: 181 VYATLALV 188 + Sbjct: 162 SRLLAEVY 169 >gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN] gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN] Length = 284 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 7/159 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +++D ET G D+ DR Q + ++V + E E + + E V + Sbjct: 5 LTKPLIVFDLETTGLDLVKDRIIQISYIKVSPNGD--EERENLY--INPEKEIPKEVVEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + ++ + F G+N+ RFD F R D Sbjct: 61 TGISDADVASAP-TFKQKAKELADKF--IGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +++ + R A + + ++ T+ K Sbjct: 118 KCRLIDAQNIFHKMERRNLAAAYEFYCGRKMEEDFTAHK 156 >gi|313204261|ref|YP_004042918.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312443577|gb|ADQ79933.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 255 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 7/123 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G ++ DR + A +V + E + + + I Sbjct: 5 LKNPIVFFDLETTGTNIVTDRIVEIAYHKVSPNGRE----ETKSIRINPEMHIPESSSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI ++ I + + GYN+ RFD R D Sbjct: 61 HGIYDADVADCP-TFKAVAKEIVRDIE--GCDLAGYNSNRFDIPLLAEELLRADIDIDLM 117 Query: 121 SWD 123 Sbjct: 118 KRK 120 >gi|222081448|ref|YP_002540811.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84] gi|221726127|gb|ACM29216.1| polymerase epsilon subunit protein [Agrobacterium radiobacter K84] Length = 340 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 77/272 (28%), Gaps = 42/272 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + D + V D + V+ PE +TGI Sbjct: 89 VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +++ + + ++ +N FD + Sbjct: 149 TDEMVEGQMID----MQQVRRMVA--PADLVIAHNAGFDRPFCEA--------------- 187 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A A++ + G KL L G H H A D +A Sbjct: 188 --------FSNVFATKAWACSVSEIDWNARGFEGTKLGYLIGQAGYFHEG-HRAIDDCFA 238 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA------SRSNT 237 L ++ ++ F L ++++R + H+ G R + Sbjct: 239 LLEVLDRNVGEEETPFAELVRTSGQSRVRIFAEHSPFEMKDHLKGRGYRWSDGSDGRPKS 298 Query: 238 ALIA----PVAWHPRYKDSVIGCNLSGDMRVF 265 I + Y S I D + Sbjct: 299 WWIEIDEDALCDELHYLRSEIYRWEEADPPIQ 330 >gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] Length = 245 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + + V V F D L DPEA + Sbjct: 12 VVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + F + D + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFLDYIRGAE---LVIHNASFDIGFMDYEFAKLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 NEF--CKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + ++ + + Sbjct: 169 LDAQILADVYLMMTGGQTTM 188 >gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] Length = 286 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V++D ET G D+ DR Q + ++V ++ E + + Sbjct: 5 LKKPLVVFDLETTGLDIVNDRIIQLSFIKVYPDGKE-ERGDHL---INPGRHIPEMITEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 TGI +K + S + + F G+N+ RFD F R D Sbjct: 61 TGIDDEKVKDAP-SFKQISTTLAETFK--GCDFAGFNSNRFDVPMLAEEFLRAGIDF 114 >gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 456 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 28/177 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + + A + D + ++ + P V +TGIT Sbjct: 2 YAILDIETTGGKYNEEGITEIAIHKFDGH-QVVDQFISL---VNPEKEIQPFVVNLTGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E ++RI + ++ +N +FD R F R ++ R + Sbjct: 58 NKMLVTAPK-FYEVAKRIVEITE---GTVLIAHNAQFDYRILRTEFRRLGFNFERKT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + P+ S+ L L + GI + H A D Sbjct: 111 -------ICTVELAQKLLPEAE----------SYSLGKLVRSLGIPVSDRHRANGDA 150 >gi|241666520|ref|YP_002984604.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861977|gb|ACS59642.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 326 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 32/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + D + V + + ++ PE +TGI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T +++ + R + + +I +N FD + Sbjct: 135 TDAMVEGQ-LIDIQSLRTLIE-----PADLIIAHNAGFDRPFCEA--------------- 173 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L G H H A D +A Sbjct: 174 --------FSKIFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ + F LY ++++R + Sbjct: 225 LLEILDREQHDGESPFTELYRASQRSRIRVFAEHSPF 261 >gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] Length = 241 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 +++D ET G + R + V + + F D DPEA Sbjct: 6 QRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEI-INRKLTGK--TFHVYIKPDRPIDPEA 62 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + + A+ + F + + +N FD + F D Sbjct: 63 IDVHGITDEFLIGKP-SYADIHQEFIDFI---DGAELVAHNASFDIGFMDYEFQLMGSDL 118 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175 + + D L++ + ++ L L GI+ H H Sbjct: 119 KKTE--DICKVTDTLEMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162 Query: 176 DAKADVYATLALVWLIREKKPK 197 A D + ++ + Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184 >gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 216 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 29/192 (15%) Query: 10 YETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 +ET G AL DR + A +R+ ++ D P +TGIT Sbjct: 4 FETTGMSPALGDRVTEVAALRI-VGGVVVDRFVSL---INCDVRISPFISQLTGITQAMV 59 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 R VE + + +F + + +N+ FD+ + R Sbjct: 60 DRAPPVE-QVMPELVRFI---GSDALAAHNVSFDEKFLLAESARLG-------------- 101 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYATLAL 187 ++ A G S+ L LA + GI AH A+AD AL Sbjct: 102 -----IVPAHAGVICSVKLSRRVFPGLRSYALGALANSLGIRFKGTAHRAEADAEVASAL 156 Query: 188 VWLIREKKPKLF 199 + I + Sbjct: 157 MLHIAAHLGDHY 168 >gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 855 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G + D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFL-NPKKSV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R + + Sbjct: 549 FSDQFLKENGENKKVVLKDFLKFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 AT ++ ++ +K K ++K I Sbjct: 648 ATKDILMVMLREKVKPTIINRMVVYGKYIKKFQPIYE 684 >gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] Length = 855 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V++D E+ G + D Q AG++++ + E IES + F P ++ + G Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFL-NPKKSV---GDSYLVHG 548 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +G + + +F +I +N+ FD + R + + Sbjct: 549 FSDQFLKENGENKKVVLKDFLKFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D LD+ R Y T+ KL+ L+ E ++HDA D+ Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 AT ++ ++ +K K ++K I Sbjct: 648 ATKDILMVMLREKVKPTIINRMVVYGKYIKKFQPIYE 684 >gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium [uncultured marine bacterium EB000_55B11] gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 230 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 29/206 (14%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D A DR + V +++ + P D P A + G++ Sbjct: 4 IVWDTETTGFDPFAGDRIVEIGAVELNQHL-PTGRVYHQYINPERDM--PPGAFEVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V + +R F + +N +FD + + Sbjct: 61 IDFLKDFPV-FSNIARDFIDFV---GDATLIAHNAKFDMKFINAELKNANLPQVPLNQS- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L++ R + + + L L I++ H A D Sbjct: 116 ----LDTLEIARKKFPGAQN--------------SLDALCRRFNIDNSSRQKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 + + + F ++K Sbjct: 158 ILAEVYLELVGGRQPDFSLSLVGQSK 183 >gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 240 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 71/237 (29%), Gaps = 19/237 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D DR + V V + + A + GIT ++ Sbjct: 16 FDTETTGIDPKRDRLVTCSLVAVTEEG-----VSKRYWLADPGVEIPERAGAVHGITTER 70 Query: 68 ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E + + N +D + R+ + G Sbjct: 71 ARAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDRHGLPTLAE--RLG 128 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + ++D + +L+DL G + H+A+ADV AT Sbjct: 129 GEVFPVVDPYLLDR---------SADRYRKGKRRLEDLCRHYGVHAEDDFHNAEADVLAT 179 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 L L+ I K P+L + + + D + S +A Sbjct: 180 LRLLAAIVRKFPELARAELEAIQERECETHADFMAFLARKAAERGREFTDSFDWPVA 236 >gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571] gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571] Length = 334 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 60/185 (32%), Gaps = 32/185 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G D D + V + + F P +TGI Sbjct: 83 VIVDTETTGLDHTRDEVIELGMVAFTYREGGAIGDVVDTFSALREPTVPISPVITKLTGI 142 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP+ ++ E + R Q I+ +N RFD + + Sbjct: 143 TPEMVAGQ-SIDLEAAARFIQ-----PASIVIAHNARFDRPFCEH--------------- 181 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + ++ ++ P D G KL L G+ H N H A D +A Sbjct: 182 --------LVEGFDVKPWACSVVEVPWADFGFEGTKLGYLIGQCGMFH-NGHRAVDDCHA 232 Query: 184 TLALV 188 L ++ Sbjct: 233 LLEVL 237 >gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] Length = 259 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 14 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLIDPEAYGV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + +F + +N FD + F D + Sbjct: 71 HGISDEFLADKP-TFADITPEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + +++N + Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNNSSE 205 >gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] Length = 239 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + P D EA+ + GIT Sbjct: 4 IVLDTETTGLDWRNGDRVIEIGCVEL-LNRNLTGRHYHVYINPERG--IDAEAIAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F I +N FD + + R Sbjct: 61 EDFLADKP-TFSAIAAEFEDFIRDAELII---HNASFDVGFLNHELSRL----------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 G + D L A D ++ + L L + I++ + H A D Sbjct: 106 GRGKLDSLC------AGVIDTLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLAEVYLAMTRGQES 174 >gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] Length = 239 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D + DR + V + I + VF + EA + G++ Sbjct: 4 IVFDTETTGLDPSKGDRVVEIGAVEI---LNLIPTGRVFHAYIDPERDMPEEAFRVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + F + +N FD + F + Sbjct: 61 REFLSQH-RKFREIAEEFIDFIEDS---PMVAHNAEFDVRFINAEFSMLNFAPLA----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R ++ SP L L GI+ + H A D Sbjct: 112 PARIVDTLAIARRLHPGSPA--------------SLDALCQRYGIDLSRRDKHGALLDAG 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] Length = 246 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 55/200 (27%), Gaps = 27/200 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 N + D ET G D DR + V ++ R + + EAV Sbjct: 4 PNRLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHH-LQIFVNPEREVPEEAVA 62 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GIT + AE + + F + +N FD + R Sbjct: 63 IHGITTEYLQDKPK-FAEIADKFIDFVK---GSTLVIHNAAFDTGFLDMELGRCGRGKI- 117 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + Y D ++ + + L L I++ N H A Sbjct: 118 -----------------SDYCQVIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGA 160 Query: 178 KADVYATLALVWLIREKKPK 197 D + + + Sbjct: 161 LLDAELLAEVYLSLSRGQDT 180 >gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622] gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622] Length = 988 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 36/192 (18%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFITGI 63 V D ET G D +D + + ++E + +P + +TG+ Sbjct: 12 VFLDLETTGLDPRVDEVIELGCIFF-ENGREVERFARLYSASRPLPLTI-----RRLTGL 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T F I + + + +N F+ + Sbjct: 66 TDADLEGHPR----FGTDIAELREKLSGWTVVAHNAPFEKGFLP---------------- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 DLL + A S + + S L+ L G+ H A +D A Sbjct: 106 ------DLLGPIHAPVLDSCELMH--YLHPELPSHSLESLLRWGGLALRQPHRAVSDCEA 157 Query: 184 TLALVWLIREKK 195 +++ E+ Sbjct: 158 VYSVLVHAMERC 169 >gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 930 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F + D ET G DR QF V + E +++ +T Sbjct: 8 ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + ++ +I + + +N+ FD + +++ Sbjct: 64 GIDQKMVAGQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL--- 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + + S+KL+DL + I+H N H A +D Sbjct: 117 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 160 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 Y T L+ I +K L + + Sbjct: 161 YGTAVLLLKIIDKLASLPQATLN 183 >gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] Length = 259 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 14 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + +F + +N FD + F D + Sbjct: 71 HGISDEFLADKP-TFADIASEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + +++N + Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNNSSE 205 >gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 837 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 77/202 (38%), Gaps = 26/202 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N+ V+ D E+ G D Q A +R ++ ++ ++ KP E+ ++ G Sbjct: 474 NNIVVLDVESTGLSTIKDDVIQIAAIRYGKEG-VVDQLDILL-KPTKSV---GESYYVHG 528 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++G+ E ++ F ++ +N+ +D +++ R + Sbjct: 529 FSDDLLQKEGMEPKEALKQFVHFIQ---GAVLVGHNVNYDLQIIKSMMSRYKLEPI---- 581 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D LD+ +Y ++ KL+ L+ E + H+A D+ Sbjct: 582 -GEYQVYDTLDLAYKVY-------------PKLSNHKLETLSKLIVTETIPTHNAMQDIL 627 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT ++ + + + + + Sbjct: 628 ATSEVLSHLLKHIEEKKQERLE 649 >gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1] gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 201 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G A R + A V + +E + + Sbjct: 1 MERIAVIDFETTGVSPGAGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + +F + +N FD + R Sbjct: 57 TGITTAMLRTAP-PVDKVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELSRIGRS---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 F+ + A + KL L G + AH A A Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L+ + + Sbjct: 153 DAEMAANLLQHLTGVLRQDH 172 >gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 978 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 31/224 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + V+ D ET G + + ++ E IE + F E + Sbjct: 15 LEDDIVVLDTETTGLSFKKCSLIEISAAKL-SGREIIERFQTF---VDPGCPIPEEITTL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + E + +F + +N FD R F + Sbjct: 71 TSITDEDVKGAP-SAKEAVAALAEFV---GGLPVLAHNATFD---------RTFIERVPG 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ D L + R +S KL +A A G H A D Sbjct: 118 GTSVSDTWIDTLSLSRIA-------------LPRLSSHKLSSMAEAFGT-MKVTHRASDD 163 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 V A + ++ L L + + + Sbjct: 164 VDALCGMWRILLLGLMNLPRGLLAKLASMHDNVEWKFRPIFSYL 207 >gi|269960762|ref|ZP_06175133.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834426|gb|EEZ88514.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 238 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 56/202 (27%), Gaps = 19/202 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++++ D ET G D D V + + + D PE I I Sbjct: 50 NYIVLDLETTGLDSEEDLILSIGWVDI-ANGKV-DLATSQHMYINSDSQIKPETAVINHI 107 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ +GV + R FF I+ + + + +R F Sbjct: 108 TPQML-SEGVSIHDAMR---AFFHAAKGKILVAHACVVETQFINQYLHRVF--------K 155 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD M L G+ N H+A AD A Sbjct: 156 LSEPPLVWLDTMCIEKHLQKAI-----NPRDEIDVTLSGTRARYGLPEYNGHNALADAVA 210 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ + + + Sbjct: 211 TAELLLAQKTRITPQGKTTIGT 232 >gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 247 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 54/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ + +F + +N FD + F Sbjct: 67 AIEVHGITDEFLRDKP----EYKQVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G S D + + +P L L GI+ H Sbjct: 118 ------KLGGSVIKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|325066430|ref|ZP_08125103.1| DNA polymerase III subunit epsilon-like protein [Actinomyces oris K20] Length = 259 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 25/172 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D + A V D S D I G+ Sbjct: 42 YAVVDLETTGLSPTTDSILEVALVLTDAAGRVEHSWSTL---IDPGVGVDVGPTHIHGLV 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + E + + + ++ +N + ++ + R D Sbjct: 99 AEELIGAPG-FDEVADLLVADLA--GRPVVAHNARFDVGFLTQALGTRGLLD-------- 147 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R ++W S +L G+E H+ Sbjct: 148 -----------RGARVPRVCTMEWAHHFMTTPSRRLTTCCEVAGVEIGRHHN 188 >gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 343 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + + P P V+I G+T Sbjct: 21 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTL---VNPERDPGP--VWIHGLT 74 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + + ++ +N FD + R + Sbjct: 75 SDVLEGAPL-FPEVAEELSARLADR---VLVAHNAAFDWSMIAREYARASVVAPVEQ--- 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL LA G+ AH A D Sbjct: 128 ---RLCTIALAKELRL-------------PLPNHKLASLAAHFGVVQQQAHHALDDARVL 171 Query: 185 LALVW 189 Sbjct: 172 AEAFR 176 >gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 341 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + + P P V+I G+T Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTL---VNPERDPGP--VWIHGLT 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + + ++ +N FD + R + Sbjct: 73 SDVLEGAPL-FPEVAEELSARLADR---VLVAHNAAFDWSMIAREYARASVVAPVEQ--- 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL LA G+ AH A D Sbjct: 126 ---RLCTIALAKELRL-------------PLPNHKLASLAAHFGVVQQQAHHALDDARVL 169 Query: 185 LALVW 189 Sbjct: 170 AEAFR 174 >gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814] gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814] Length = 233 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 62/221 (28%), Gaps = 29/221 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G DR + V + F + + + ITGIT Sbjct: 4 IVFDTETTGLSAKDGDRIIELGAVEI-VDLLPTGR--EFHRLIYPERQVSEDTIRITGIT 60 Query: 65 PQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + V + + F + +N FD + R + Sbjct: 61 DEMLKGKPVFSDPSVYKEFLDFIEDS---PLVAHNAEFDRGFLNEEMRRVGGPDFPKE-- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 D L + R + + S L L I H A D Sbjct: 116 ---RCVDTLALAREKFPGA--------------SATLDALCKRFDISLAKRDVHTAVVDS 158 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 ++ +R + FE+ + ++ ++ + P Sbjct: 159 QLLASVYLELRGGRAHSFEFENEGQSDAEVAFKRTQRRQRP 199 >gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis excentricus CB 48] gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis excentricus CB 48] Length = 324 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 32/209 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + A D + + R D + + EV+ + +TGI Sbjct: 73 VIIDTETTGLNKAEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPANITELTGI 132 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + P II +N Sbjct: 133 DDAMVKGQSIDFH-----VLEALIKPADLIIAHNAAFDR--------------------- 166 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L A A++ + + G KL L +G H H A D +A Sbjct: 167 ---PYCERLSPAFADKAWACSNSEIDWKARGFEGSKLGYLITQSGYFHDG-HRAVDDCFA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212 L ++ F LY+ ++++R Sbjct: 223 LLEVLLQPGVNGITPFSELYNASQRDRVR 251 >gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] Length = 1118 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 28/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D+ET G + DR + V +D ++EST +P D F+ Sbjct: 4 PKRYAVVDFETTGFG-STDRVIEIGVVLLDHN-REVESTWETLVQPQRDIPNS----FVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITP + + E + N + +N F+ + + F + Sbjct: 58 HITPTDVVDAPL-FGEVAGEFFDLL---NGRTVVAHNAPFEVRFLQREFSNLGVAWPNY- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G D + + Y L+ GI + H A AD Sbjct: 113 ---GAWVVDTKRLFQQTYPGEGTT--------------LEHALKVVGITNARPHSALADT 155 Query: 182 YATLALV 188 AT L Sbjct: 156 LATAELF 162 >gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family [Eremococcus coleocola ACS-139-V-Col8] gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family [Eremococcus coleocola ACS-139-V-Col8] Length = 849 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 29/189 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT I D ET G ++ DR Q A + + + + + ++ + Sbjct: 1 MTTPIAIVDIETTGPNLDQGDRIIQIAALII-EEGQVTKEYDML---INPNMPIPSHISK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ ++ + ++ H CI +NI FD + + F+ D Sbjct: 57 LTGISNEQVQKAPH-LSQVIDLWHYRLKD---CIFVAHNINFDLRFLKQCFHHFGLDFN- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D + + + A F L DL+ + AH A A Sbjct: 112 ------PPALDTVKLAKIF-------------MPQAIGFNLTDLSQEMNLFFDQAHQALA 152 Query: 180 DVYATLALV 188 D T L+ Sbjct: 153 DAKITAYLL 161 >gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus MSSA476] gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma haemofelis str. Langford 1] Length = 1393 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 48/360 (13%), Positives = 95/360 (26%), Gaps = 30/360 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G + D + A + +I + +F +T IT Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKY-SNKRRIATYHSYF---KISEPLKQHIKDLTHIT 406 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G + + F + ++ +N I FD + + + + Sbjct: 407 DELLAEKGQDLEVVLKEVKDFTQ--GSVLVAHNGIEFDFPFLNAKYIKLGMEPLSNP--- 461 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 L+D +R + + S L + G + +AH A DV Sbjct: 462 ------LIDTLRLSQTIFSE--------EKYKSHSLGAICKRVGVEYDLEHAHSADFDVD 507 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV----HVSGMFGASRSNTA 238 + E K K + + K + + + V A + Sbjct: 508 VLWQVFMYSLEPKLKEWGVNLEDGLKEANDAVFNKGVFNYIHGHKALVYVKNQAGVKDLY 567 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 I +A +Y S ++L V L+ + +K Sbjct: 568 EILSIAQTEQYLGKPQISRNSIS-SYRENLLIVSPPLNSEPIALLLRDDISTFLKASEFY 626 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 I+ P + E + L + Y Y + Sbjct: 627 DYLIIPPPSHFVHEVSRNNLDTEEVNALLAKLYELSKEHSIKLLFNYAARYIHPQEYQQY 686 >gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 251 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 16/192 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V R E + +A I GIT ++ Sbjct: 22 FDLETTGTDPREARIVT-AAVVEARAGEPVRRRTWLA---DPGVRIPAQASAIHGITSER 77 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E + + + N FD R S G Sbjct: 78 AAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPSLSD-RLGG 136 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++D A L+ ++ G+ +AHDA AD A + Sbjct: 137 RPTGPVIDPYTIDRAV---------DRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAV 187 Query: 186 ALVWLIREKKPK 197 + + + P Sbjct: 188 RVAGALALRHPS 199 >gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f] gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f] Length = 266 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 29/250 (11%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G ++ DR + ++V + T + + + I GI Sbjct: 18 FFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAIHGIYDA 73 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E ++ I + + G+N+ RFD F R Sbjct: 74 DVVDCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------------ 118 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +D+ F + + + S + N +AH A+AD AT Sbjct: 119 -----VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEADTRATYE 170 Query: 187 LVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244 ++ + + + + + + M + +F + +A V Sbjct: 171 VLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMSVAEVLK 230 Query: 245 WHPRYKDSVI 254 P Y ++ Sbjct: 231 KDPGYYSWIL 240 >gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] Length = 246 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 53/212 (25%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V + KP D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRHYHVYVKP--DRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + + F ++ +N F D Sbjct: 66 HGISDEFLADKP-TFDQIADEFIDFIR--GGELVIHNASFDIG----------FMDHEFR 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 G + D + + L L I++ H A Sbjct: 113 MLQKGLPKTDTFCTITDSLLMARRLF-------PGKRNNLDALCGRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + + + N Sbjct: 166 LDAEILAEVYLAMTGGQTSMAFQMEGDTQHND 197 >gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 285 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 16/192 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V R E + +A I GIT ++ Sbjct: 56 FDLETTGTDPREARIVT-AAVVEARAGEPVRRRTWLA---DPGVRIPAQASAIHGITSER 111 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E + + + N FD R S G Sbjct: 112 AAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPSLSD-RLGG 170 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++D A L+ ++ G+ +AHDA AD A + Sbjct: 171 RPTGPVIDPYTIDRAV---------DRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAV 221 Query: 186 ALVWLIREKKPK 197 + + + P Sbjct: 222 RVAGALALRHPS 233 >gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 240 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 16/192 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V R E + +A I GIT ++ Sbjct: 11 FDLETTGTDPREARIVT-AAVVEARAGEPVRRRTWLA---DPGVRIPAQASAIHGITSER 66 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E + + + N FD R S G Sbjct: 67 AAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPSLSD-RLGG 125 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++D A L+ ++ G+ +AHDA AD A + Sbjct: 126 RPTGPVIDPYTIDRAV---------DRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAV 176 Query: 186 ALVWLIREKKPK 197 + + + P Sbjct: 177 RVAGALALRHPS 188 >gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640] gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06] Length = 470 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ D + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDMVTEVALVKF-----EQGRAERYEWLVNPQKPIPKFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + + N Sbjct: 183 YLEYSLSEHGVEEWIRQCFRLMNPK 207 >gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 929 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F + D ET G DR QF V + E +++ +T Sbjct: 7 ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLT 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + ++ +I + + +N+ FD + +++ Sbjct: 63 GIDQKMVAGQ-ADFKHYAPKIREILQDK---VFVAHNVNFDFPFLNYELTNAGFEAL--- 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + + S+KL+DL + I+H N H A +D Sbjct: 116 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 159 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 Y T L+ I +K L + + Sbjct: 160 YGTAVLLLKIIDKLASLPQATLN 182 >gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27] gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27] Length = 323 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 52/187 (27%), Gaps = 35/187 (18%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP----ADDYLPDPEAVFIT 61 ++ D ET G D A D +F V D E EA IT Sbjct: 50 LVVDVETTGLDTARDVIIEFGAVPFDFDGE--GRVYTVHPPLSYFEDPGRPIPAEASAIT 107 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + +A + Q ++ +N FD Sbjct: 108 GITDDDVRGKRIDDAAVLAALDQ------AVLVIAHNAGFDRRM---------------- 145 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + A ++ + P G+ S KL L H A D Sbjct: 146 -------LERRLPAFAAKHWACSQQEVPWVRFGSRSQKLDYLLYRIARAFHTGHRAADDC 198 Query: 182 YATLALV 188 ATL L+ Sbjct: 199 LATLHLL 205 >gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae KM-6054] Length = 329 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 50/185 (27%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G DR ++D E + P P V+I G+T Sbjct: 25 FAVVDVETTGLG-RSDRVISAGVYQLDPDGEITDHWYTL---VNPQRDPGP--VWIHGLT 78 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + ++ +N FD F R + Sbjct: 79 SEVLAGAP-TFPEVAAEFAERLRDR---VLVAHNALFDWNMISREFSRAGLRAPVEQ--- 131 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + R + + KL LA + AH A D Sbjct: 132 ---RLCTMVLARDLRL-------------PLPNGKLSSLAAHFDVRQRQAHHALDDARVL 175 Query: 185 LALVW 189 + Sbjct: 176 AEVFR 180 >gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 245 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 31/204 (15%) Query: 2 TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 + V+ D ET G + R + V + + F D P Sbjct: 9 QHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQP 65 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +AV + GIT + + ++ +F + +N FD + + F Sbjct: 66 DAVEVHGITDEFLVDKP----DYRDVHAEFLEFIKGAELVAHNAPFDVGFMDHEFG--ML 119 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173 D + D L + + I+ L L GI+ H Sbjct: 120 DPSIGKTVDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRT 165 Query: 174 AHDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189 >gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] Length = 1447 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 62/478 (12%), Positives = 140/478 (29%), Gaps = 54/478 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G +F + + I + F + +TGIT Sbjct: 416 YVCFDIETTGLSPRYHELIEFGATII-KNGSVISREQFFIKAKNS---LSAFTINLTGIT 471 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q +G+ +I + F I +N FD + F N + + ++ Sbjct: 472 DQMLKNEGLELKPALLKISKLFENR---IAVAHNSTFDMNFLFQKFLDNKMEIPKTTF-- 526 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 +D + + +L++ G AH A D Sbjct: 527 -------IDTLVVSRLLFSKDSK----------HRLENYVGRLGIIYNSDAAHRADYDAE 569 Query: 183 ATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 + + + R+ + + V G + Sbjct: 570 ILANAWIPSMNLLAEININTIVELRDYKSNQLYFKKFSDDVSVIALNQKGLKELFNFVSL 629 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQD---LDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + + + ++ + L+ + + F + EL I++ Sbjct: 630 SLTERMYNQPKIFFEDIKRSKNILVGSSTLNGLVINALFFKNDTEL----RNYIEKFDYI 685 Query: 299 KCPILMPIDYCK---KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355 + P L + E K ++ +++ + I T+ S Sbjct: 686 EIPCLSNFKHWIEYGDFKEEDIKNALKYLVKTAKEMKKIVVAVGDVRYINETEKTAYSLL 745 Query: 356 VDSQLYDGF-------FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408 V ++ G D ++ +R T + + + D+ L + N Sbjct: 746 VYAKAIGGDRHYLFDYKRKHDLKLPERFYLTTEQMIEEFSF-LEDK----LAYEIVVEN- 799 Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466 + +++K + +E KK L + ++ KL+ L + ++ E L + ++ Sbjct: 800 TNLITDKINE--IEVIKKDLYTPKFDDSPTKLKDLVYKTAREKYGEKLPEIVENRIKK 855 >gi|321223519|gb|EFX48584.1| Putative exonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 194 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 55/190 (28%), Gaps = 20/190 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N ++ D ET G + + D + EA+ I G Sbjct: 18 NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + F + YN FD R + N S W Sbjct: 70 ITNEMVAFAPA-WTDICGAVEEIFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181 + + P R +G KL D A G + AH A AD Sbjct: 126 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEDKAHRALADC 178 Query: 182 YATLALVWLI 191 TL LV + Sbjct: 179 KMTLGLVRAL 188 >gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] Length = 245 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 31/200 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +++D ET G ++ R + + + + D L DPEA+ Sbjct: 16 IVFDTETTGMNMGAGGVHIGHRVIEIGCIEL-INRRPTGR--TYHVYIKPDRLVDPEAIA 72 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + A + F + +N FD + + +R Sbjct: 73 VHGITDEFLQDKP-SFATIADEFIAFIVGAE---LVAHNASFDTNFLDHE-FRLLNKGLP 127 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 + D L + + ++ L L GI+ H H A Sbjct: 128 AT-KEICKITDTLAIAKKLFPG--------------KRNNLDVLCTRYGIDNSHRTLHGA 172 Query: 178 KADVYATLALVWLIREKKPK 197 D + + + K Sbjct: 173 LLDAEILADVYLFMTGGQTK 192 >gi|109898818|ref|YP_662073.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica T6c] gi|109701099|gb|ABG41019.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas atlantica T6c] Length = 251 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + D V + + + + + + KP D ++V I GIT Sbjct: 60 LVALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKP--DTELKTKSVVIHGIT 117 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F+R + + ++ ++ + + + + Sbjct: 118 HSDVADAPS----FNRVLDELLQHLQGKVVVAHHKDIEVRFLNSALKHYIGEEIV----- 168 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + S +L D + + H+A D A Sbjct: 169 -FPCIDTMALEARFSRTIKRTFLRSLLGQKTPSIRLTDCRSRYRLPYYRQHNALTDALAC 227 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 228 AELLQAQVATHYPD 241 >gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus JKD6159] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH9] gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH1] gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781] gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus 132] gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus MR1] gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH9] gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH1] gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781] gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus 04-02981] gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS03] gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus aureus subsp. aureus T0131] gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21189] gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21172] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola DSM 14237] gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola DSM 14237] Length = 258 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +VA DR + A +++ K E + + E + + Sbjct: 5 LTRPICFFDLETTGINVAKDRVVEIAILKIHPNGNK----ESKTWLVNPEMVIPDEVIAV 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GIT +K + E S+ I+ + + G+N+ RFD R+ D Sbjct: 61 HGITNEKVANEP-TFKELSKDIYNMIKDSD--LGGFNSDRFDIPLLAEEMLRSEIDF 114 >gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 247 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 54/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ +F + +N FD + F Sbjct: 67 AIEVHGITDEFLRDKP----EYKEVHAEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G+S D + + +P L L GI+ H Sbjct: 118 ------KLGSSIGKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|213586760|ref|ZP_03368586.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 192 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 54/188 (28%), Gaps = 20/188 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N ++ D ET G + + D + EA+ I G Sbjct: 24 NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + F + YN FD R + N S W Sbjct: 76 ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 131 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181 + + P R +G KL D A G + AH A AD Sbjct: 132 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADC 184 Query: 182 YATLALVW 189 TL LV Sbjct: 185 KMTLGLVR 192 >gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 30/208 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + F + D + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFLDYIKGAE---LVIHNASFDIGFMDYEFSKLQRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206 D + + + + + + Sbjct: 166 LDAQILADVYLAMTGGQTSMKFSMENES 193 >gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 930 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 28/202 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G DR QF V + E +++ +TG Sbjct: 9 SFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLTG 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + ++ +I + + +N+ FD + +++ Sbjct: 65 IDQKMVAGQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL---- 116 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D +++ + + S+KL+DL + I+H N H A +D Y Sbjct: 117 --TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDAY 161 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T L+ I +K L + + Sbjct: 162 GTAVLLLKIIDKLASLPQATLN 183 >gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium mcbrellneri ATCC 49030] gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium mcbrellneri ATCC 49030] Length = 536 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 25/190 (13%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GRD A + + + E + + EA + GIT + Sbjct: 322 FDLETTGRDPHTAHIVSAALIDMR-------THETWEWLIYPEGEIPAEASAVHGITTEY 374 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 A +G+ A+ +IHQ F+ I +N +D + Sbjct: 375 ARENGMPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGLALP------DFF 428 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L + + F L + G+ NAHDA AD A+ + Sbjct: 429 VIDTLVIDKHAEPFR------------KGPRTLDAVCARWGVSLDNAHDATADARASGLV 476 Query: 188 VWLIREKKPK 197 I + P+ Sbjct: 477 ALAIADAFPE 486 >gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259] gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259] Length = 256 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 27/198 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T + +D E G +A DR + + ++V + E + + EA + Sbjct: 6 LTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGRE----ESKTLRFNPEMHISAEATAV 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E S + F + + G+N+ FD F R D Sbjct: 62 NGIKDEDVADCP-TFKEKSGELTAIFQSCD--LAGFNSNVFDVPMLVEEFARAGSDFDIT 118 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + NAH A AD Sbjct: 119 KSKL----VDVQTIYH----------------KLEPRNLIAAYKFYCNKDLHNAHTAMAD 158 Query: 181 VYATLALVWLIREKKPKL 198 AT ++ +K K Sbjct: 159 TQATYEVLKAQLDKYGKE 176 >gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] Length = 247 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 53/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ +F + +N FD + F Sbjct: 67 AIEVHGITDEFLRDKP----EYKDVHDEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G S D + + +P L L GI+ H Sbjct: 118 ------KLGGSVVKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10] gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10] Length = 230 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 8/125 (6%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D DR + V + + F E V ITG+T Sbjct: 4 IVFDTETTGLDPNTGDRVTELGCVEI-IDFIPTGK--TFHAYVNPQRSVPKEVVEITGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + +F + +N FD + R D Y Sbjct: 61 TEFLADKPL-FDEVGPQFVEFV---GDATMVAHNAPFDRGFINMELARLGLDIYPDDRFK 116 Query: 125 GNSRW 129 +R Sbjct: 117 DTARI 121 >gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 204 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 30/201 (14%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + D+ET G R + A V + Q +E + Sbjct: 1 MLERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI+ E + F + + +N FD + R Sbjct: 57 LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR---- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 + +F+ + GA + KL L + AH A Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAI 152 Query: 179 ADVYATLALVWLIREKKPKLF 199 AD L + + Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173 >gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 248 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 57/199 (28%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + + V V F D L DPEA + Sbjct: 9 VVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIQPDRLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A+ + +F I +N FD + F + D Sbjct: 66 HGISDEFLQDKPL-FADIADEFIEFIRGAELII---HNAPFDIGFIDYEFGKLNRDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 --ADFCKITDSLQLARGLFPG--------------KRNNLDALCDRYDIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + ++ + Sbjct: 166 LDAEILSDVYLIMTGGQTS 184 >gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6] gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 243 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 + V+ D ET G + R + V + + F D P+ Sbjct: 10 DRIVVLDTETTGMNREGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPD 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT Q + E+ + +F + +N FD + F + D Sbjct: 67 AIDVHGITDQFLVDKP----EYRQVHQEFLEFIKGAELVAHNAPFDVGFMDYEFGK--LD 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 + D+ D L + + I+ L L GI+ H Sbjct: 121 AAIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] Length = 896 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 29/218 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58 +++D ET G DV D + A +R+ R E + + + LP +P Sbjct: 514 IIVFDTETTGLDVFTDDIIEIAAMRI-RGGEIVGEPLDLYIETGKPILPKLGDKENPMYA 572 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + A + + AE + +F + T I +N +D N R Sbjct: 573 IYH---EKMAAGELLAPAEA---LCRFLAYIGTYPILGHNASYDYNILDNCLRR---YCN 623 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +GN +D L ++R + S+KL+ L + N+H A Sbjct: 624 DTMQAHGNRCFDSLKLIRLLAPSLH-------------SYKLESLLETFRLTGQNSHQAI 670 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 DV AT++LV L EK + +++ + Sbjct: 671 DDVGATVSLVRLCAEKARTKQAQQLAFIRHPKVQPFAN 708 >gi|309789846|ref|ZP_07684425.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308228150|gb|EFO81799.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 230 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 15/207 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + D V ++ + +P + D ++ I GIT Sbjct: 34 YSVLDIETSGLNHKRDALLAIGLVEIEEGRIHLNRHWYTLVRPPEGLEVDASSIRIHGIT 93 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A+ + + + ++ + + D + + Sbjct: 94 RAELEDAPL--ADVV--LPELLARLAGRVMVVHVAQVDVSFLNQAM---------RTRWG 140 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF--KLQDLALANGIEHVNAHDAKADVY 182 ++D R + S +L+ LA G+ H+A D Sbjct: 141 AKLVGPIIDTARIAMSLHETAKILGSVQPDMPMPAIQLRALATRFGLPSYGEHNALNDAL 200 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN 209 T L + + K Sbjct: 201 TTAQLFLAQATRLEGMGRPTLRGLMKA 227 >gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] Length = 897 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] Length = 239 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 49/193 (25%), Gaps = 26/193 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G D R + V + D D A+ + IT Sbjct: 4 VVLDTETTGLDPKQGHRIIEIGCVEL-ENRRLTG--NKLHMYLQPDREIDDGAIEVHQIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F + +F + +N FD + + N D + Sbjct: 61 NEFLADKPR----FGDVVDEFLDFVKGSELVIHNAAFDVGFIDSEL--NLLDRNLGQTKD 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182 D L + R ++ L L H H A D Sbjct: 115 YCGVLDTLAMARKMHPG--------------KRNDLDSLCKRYDINNSHRTLHGALLDAE 160 Query: 183 ATLALVWLIREKK 195 + ++ + Sbjct: 161 ILADVYLMMTGGQ 173 >gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] Length = 248 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D + A +RV+ + P +TGI Sbjct: 77 VVLDLETTGLSPERDEIIEVALIRVEG-----ARRLEYSRLVNPGRPIPPRITRLTGIRS 131 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + N FD + R F + S Sbjct: 132 GDVRDQP----DVYTVLEEVVPLLEGATLVIQNAPFDLGFLRPRFAKL-------SVTIR 180 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N D + R G L L + + H A D ATL Sbjct: 181 NEVIDTVQWARRA-------------LPGMRRRSLDHLIEVFEVPKRSRHRAFEDAEATL 227 Query: 186 ALVWLIREKKPKLFEYLY 203 A+ + + Sbjct: 228 AVAYELYYMLTAGKARAL 245 >gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 242 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + R + V V + + D EA+ Sbjct: 11 IILDTETTGMNQGAGAIFLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQIIDEEAIE 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + AE ++ +F + I +N FD + + F + Sbjct: 68 VHGITNEFVAHKPK-FAEVAQSFIEFI---DGAEIVAHNANFDVSFMDHEF--SLLQPVG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L++ + ++ + L L GI++ + H A Sbjct: 122 PKTADICPILDTLEIAKFLHPGQKN--------------NLDALCKRYGIDNSRRDLHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLMMTGGQTKF 188 >gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1] Length = 252 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 FVI D ET G V R + V E I F D D A+ Sbjct: 7 KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + QF + +N FD + N F Sbjct: 61 NVHGITDAFLVGKPR-FGDVAEEFFQFIQ---GATLVIHNAAFDVGFINNEFALLGQQDR 116 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176 + + D L + R+ + + L L I++ H Sbjct: 117 ADISQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182 >gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] Length = 463 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + DR + A VR + + +TGI Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRF-----EQGRATHYEQLVNPCRSIPEFVARLTGIHD 76 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + V A+ + + ++ +N RFD + R+ F R D Sbjct: 77 ETVKNAPV-FADIAADLLPLLQ---GAVVVAHNSRFDYTFLRHEFARIHTDFAA------ 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L ++ P+ + L + GI+ N H A DV A Sbjct: 127 ----PSLCTVQLSRRLYPEFYK----------HSLDSIIERTGIQTANRHRAMTDVAALC 172 Query: 186 ALVW-LIREKKPKLFEYLYD 204 + + EK + ++ Sbjct: 173 DYLELSLAEKNHQQWDEHVR 192 >gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440] gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] Length = 252 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 FVI D ET G V R + V E I F D D A+ Sbjct: 7 KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + QF + +N FD + N F Sbjct: 61 NVHGITDAFLVGKPR-FGDVAEEFFQFIQ---GATLVIHNAAFDVGFINNEFALLGQQDR 116 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176 + + D L + R+ + + L L I++ H Sbjct: 117 ADISQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182 >gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 252 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 FVI D ET G V R + V E I F D D A+ Sbjct: 7 KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + QF + +N FD + N F Sbjct: 61 NVHGITDAFLVGKPR-FGDVAEEFFQFIQ---GATLVIHNAAFDVGFINNEFALLGQQDR 116 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176 + + D L + R+ + + L L I++ H Sbjct: 117 ADISQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182 >gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] Length = 897 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 203 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 2 TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G + R + A V + Q +E + + Sbjct: 1 MERVAVIDFETTGISPSPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E + F + + +N FD + R Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR----- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 + +F+ + GA + KL L + AH A A Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF 199 D L + + K Sbjct: 153 DAEMAANLTAYLTNELRKTH 172 >gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] Length = 172 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 28/185 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D ET G D + + + ++I KP ++P IT I Sbjct: 8 YVVVDLETTGLSPFNGDEIIEIG--VTEIKGDRIYRNYSRLVKPN-GFIPSV-ITEITNI 63 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +F I +N +FD + + D Sbjct: 64 TNDMVQDA-LPLEDVLPNFRKFI---GDRTIIAHNAKFDIGFLNYYLEKMNLDPI----- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +++++ + + KLQ GI + NAH A +D A Sbjct: 115 --DKYICTMEMLKKNKEYKG------------KNKKLQTACDYYGILNENAHRADSDTLA 160 Query: 184 TLALV 188 T L Sbjct: 161 TAKLF 165 >gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] Length = 905 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + + I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAEEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1] gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1] Length = 234 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 27/169 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G + A DR + V ++E+ F C EA + G++ Sbjct: 4 IVFDTETTGLNPATGDRLVEIGCV---ELVNRVETGNSFHCYFNPQRSMPFEAEQVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ ++ + + + +N FD + Sbjct: 61 ERFLSDKPL----FADKVEELLAFIGDAPLVAHNASFDFGFLNWELGACGRSIVDMGRM- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D L + R ++ + L L GI+ + Sbjct: 116 ----VDTLQIARKMHPGA--------------KHSLDALCSRYGIDRSH 146 >gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] Length = 253 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 31/209 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D L DP+A+ + Sbjct: 8 IVLDTETTGMNQIGAHYEGHCIIEIGAV---EMINRKYTGNNFHIYIKPDRLVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + ++ ++ I +N FD + F + D Sbjct: 65 HGITDEMLADKP-DFKTIAQDFIEYIRGAELLI---HNAPFDVGFMDYEFRKLGLDIKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 120 --TDICLVTDTLQMARQMYPG--------------KRNSLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRN 207 D + + + LF+ + + Sbjct: 164 LDAEILADVYLSMTGGQTSLFDEEHADSS 192 >gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1429 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 26/194 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T V +D ET G + + D + A ++ IE+ F P V I Sbjct: 761 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-TTFHTLVNPQRSITPRTVGIH 813 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113 IT V+ ++ I Q+ + ++G+N D+ R + Sbjct: 814 HITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 872 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS------FKLQDLALAN 167 + +G D L ++ A + ++ + + + N Sbjct: 873 APEC----QLDGILFCDSLALLNAHRSDLRWRMRIRRANQPLMDALASSLSLSRLITALN 928 Query: 168 GIEHVNAHDAKADV 181 + H A D Sbjct: 929 VRPEGDLHRADTDT 942 >gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SS3/4] Length = 247 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 63/234 (26%), Gaps = 28/234 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M N +V D ET G ++ + V+V E ++ V + Sbjct: 5 MINSYVALDLETTGIGARHEKITEIGMVKV-IDGETTDTYHT---MVNPHREIPKRIVEL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT +E E + F + + I FD + Sbjct: 61 TGITDDMVKDAPGIE-EILDEVLAFTED---LPLLGHQIIFDYGFLVQAA-------VNQ 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + R G L + AH A +D Sbjct: 110 KRKFEKYGVDTLKLCR-------------YLMPGEEKKNLSAACAYFEVTQDTAHRALSD 156 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 YA L ++++ K L+ + K + H+ + R Sbjct: 157 AYAAHNLYQELKKRFGKERPELFTAKMLQYKAKKERTASKRQKEHLQDLLKYHR 210 >gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46] gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46] Length = 238 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 60/231 (25%), Gaps = 25/231 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G D DR + G+ I + F A+ + G+ Sbjct: 5 IVLDTETTGTDAKTDRLVEIGGI---ELLNHIPTGREFHRYINPQRPVSQGALAVHGLAD 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 F+ + F +N FD + + R + Sbjct: 62 AFLADKPP----FAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLG--DAAPPAIDL 115 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 D L + R + + L L GI++ H A D Sbjct: 116 AGVVDTLALARRKHP--------------NAANNLDALCARYGIDNSRRTKHGALLDAQI 161 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 + + K D + ++ L P S + A R Sbjct: 162 LAEVYIELLGGKQTSLGLTLDVASTVRVATLGGPAAHVPRAVRSRLTQAER 212 >gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1] gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 252 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 FVI D ET G V R + V E I F D D A+ Sbjct: 7 KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + +F + +N FD + N F Sbjct: 61 NVHGITDAFLVGKPR-FGDVAEEFFEFIQ---GATLVIHNAAFDVGFINNEFALIGQQDR 116 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176 + + D L + R+ + + L L I++ H Sbjct: 117 ADVSQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182 >gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102] gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102] Length = 463 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + DR + A VR + + +TGI Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRF-----EQGRATHYEQLVNPCRSIPEFVARLTGIHD 76 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + V A+ + + ++ +N RFD + R+ F R D Sbjct: 77 ETVKNAPV-FADIAADLLPLLQ---GAVVVAHNSRFDYTFLRHEFARIHTDFAA------ 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L ++ P+ + L + GI+ N H A DV A Sbjct: 127 ----PSLCTVQLSRRLYPEFYK----------HSLDSIIERTGIQTANRHRAMTDVVALC 172 Query: 186 ALVW-LIREKKPKLFEYLYD 204 + + EK + ++ Sbjct: 173 DYLELSLTEKNHQQWDEHVR 192 >gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] Length = 900 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 27/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D Q + + I++ D P +T I Sbjct: 5 TYAVVDLETTGNQLDYDEIIQIG-ITFVSNHKIIDTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I+ CI +NI FD + +N F Sbjct: 61 EEDMLAQAPY-FNEVAEDIYDQIKD---CIFVAHNISFDLNFIKNAFNNC---------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+ + S++L +LA A+ I AH A D Sbjct: 107 ---------DIQFKPKKVMDTLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATT 157 Query: 184 TLALVWLIREK 194 T L+ +K Sbjct: 158 TAKLMIKAFKK 168 >gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct] Length = 247 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + F D D A+ + GIT Sbjct: 4 VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +F I +N FD + N + R Sbjct: 61 NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 S D L + R + + L L G+++ H A D Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 162 ILADVYLAMTGGQTS 176 >gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1] gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2] gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58] gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1] gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1] gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1] gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58] gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] Length = 246 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + F D D A+ + GIT Sbjct: 4 VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +F I +N FD + N + R Sbjct: 61 NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 S D L + R + + L L G+++ H A D Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 162 ILADVYLAMTGGQTS 176 >gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH60] gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp. aureus CGS00] Length = 897 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + + I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAEEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] Length = 230 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 29/206 (14%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D A DR + V +++ + P D P A + G++ Sbjct: 4 IVWDTETTGFDPFAGDRIVEIGAVELNQHL-PTGRVYHQYINPERDM--PPGAFEVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V FS F + +N +FD + + Sbjct: 61 IDFLKDFPV----FSNIARDFIDFVGDATLIAHNAKFDMKFINAELKNANLPQVPLNQS- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L++ R + + + L L I++ H A D Sbjct: 116 ----LDTLEIARKKFPGAQN--------------SLDALCRRFNIDNSSRQKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 + + + F ++K Sbjct: 158 ILAEVYLELVGGRQPDFSLSLVGQSK 183 >gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] Length = 247 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ +F + +N FD + F Sbjct: 67 AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G + D + + +P L L GI+ H Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071] gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071] Length = 611 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 28/190 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A V + E+ P P V + G+T ++ Sbjct: 23 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTL---VDPGCDPGP--VDVHGLTRER 77 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + R+ ++ +N +FD + + F R Sbjct: 78 LSGAPA-FDQIAGRLGAMLQDR---VLVAHNAQFDYDFLAHEFARARLYLPVT------R 127 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + D KL LA G+ AHDA D + Sbjct: 128 RLCTLALNRQV-------------DPPTRDMKLDSLAAHYGVPRTRAHDALDDTRVLAGI 174 Query: 188 VWLIREKKPK 197 + + Sbjct: 175 FRATLREAAR 184 >gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] Length = 900 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 58/191 (30%), Gaps = 27/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + I D ET G + D Q + R + I++ D P +T I Sbjct: 5 TYAIVDLETTGNQLDYDEIIQIG-ITFVRNHKIIDTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I+ CI +NI FD + +N F Sbjct: 61 EEDMLAQAPY-FNEVAEDIYDQIKD---CIFVAHNISFDLNFIKNAFNNC---------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+ + S++L +LA A+ I AH A D Sbjct: 107 ---------DIQFKPKKVMDTLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATT 157 Query: 184 TLALVWLIREK 194 T L+ +K Sbjct: 158 TAKLMIKAFKK 168 >gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 32/196 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61 ++ D ET G + R + V E I+ F D D A+ + Sbjct: 4 IVLDTETTGLEPQQGHRIIEIGCV------EMIDRRLSGNNFHQYLQPDREIDAGAIEVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + A+ + + I +N FD + + DS Sbjct: 58 GITNEFLADKPR-FADLAADFLDYIRGAELII---HNAPFDVGFLNHELQLMGADSPPIG 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + D L + + ++ + L L +++ H A Sbjct: 114 EL--CAVIDTLVMAKKMHPGQRN--------------SLDALCKRYDVDNTQRELHGALL 157 Query: 180 DVYATLALVWLIREKK 195 D + + + Sbjct: 158 DAEILADVYLAMTGGQ 173 >gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581] gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae] Length = 1455 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 63/480 (13%), Positives = 132/480 (27%), Gaps = 51/480 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + +F V + + + ES + F E IT IT Sbjct: 401 YVVFDLETTGLSPVYNEIIEFGAVVI-QDGIQTESHQFFVKAKEP---IPTEITKITNIT 456 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G+ E RI + I+ +N +FD + S Sbjct: 457 QEMVDEQGIEATEAFYRISKIIKDS---ILVAHNAKFDFNFLAE------LFKKEASMTI 507 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 D L V R + S L++++ G + AH A D Sbjct: 508 DQPIIDTLQVSR-------------FLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAE 554 Query: 183 ATLALV--WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 + +L + + + + L + + + A + Sbjct: 555 ILSKVWLNFLTQILDQDITDLKKLEYTSQSIFDLKPEKVFSKEFTIIAKNQAGIKKLYQL 614 Query: 241 APVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ ++ +L + + K I + Sbjct: 615 VSLSNTDYLISKPLLFYDLLEKDENLLIGSGGPESILIDNLLFSTKENAEKFIPIFDFIE 674 Query: 300 CPI------LMPIDYCKKEHFERWGIDHKRCLENLTL-------LRQQTNLRDRFKAIYN 346 P L+ + KKEH + +R + F +Y Sbjct: 675 LPPPEAFRHLIERNMFKKEHIFDLLKTLIAFGKKYKKPVVAIGDVRYVEPKQKIFHELYI 734 Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-PELFFRYRA 405 + + I E+L D +L E+ + Sbjct: 735 YAKRVGGGSHNLFDHREREDYKKSHIFPDKYLFTTEELINQFAFLEDEKLIKEIVIK--- 791 Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + +S++ + E K L + + + + KL+ E + + + + + ++ Sbjct: 792 --NSNLISDQIDNNI-EIIKPGLYKPKFDNSEYKLKEFVYENAHKKYGKIIPEKIEKRIK 848 >gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] Length = 337 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 65/237 (27%), Gaps = 30/237 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + V P P + G+T + Sbjct: 26 VVDVETTGFRPGQARIVSVAALAVGDDGSV---EHSMSSLLNPGVDPGP--THVHGLTAE 80 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 F+ + + V + +N FD + + + Sbjct: 81 MLEGQPC----FADVVDELIEVLRGRTLVAHNAGFDYSFLAAEAELVGAELPIDT----- 131 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + G + +L+ LA G+ + HDA D Sbjct: 132 -AMCTVELAR-------------RLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQ 177 Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 ++ L R + K++ L K + + PL + +N Sbjct: 178 ILKPTLARARDRKVWLPLRQLTRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFV 234 >gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] Length = 1493 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 52/406 (12%), Positives = 109/406 (26%), Gaps = 36/406 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G + +F V D T + + +T ITP Sbjct: 441 VVFDLETTGLSPEFNEIIEFGAVVFDP---VTGKTTKYDYLFKPKQPLKQFTIDLTNITP 497 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + ++ +F +I++ I+ +N FD + ++ R Y + + Sbjct: 498 EMLEDKKNIDDDF-DKIYELIKDS---ILVAHNANFDFNFLNSLSKRLGYGDLQNT---- 549 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183 D L + R + S +L + GI + AH D Sbjct: 550 --VIDTLTLSRLVR-------------PALKSHRLGAVCKKFGILYDEHVAHRGDYDADV 594 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK-----NQLRKLIDIQNMTPLVHVSGMFGAS-RSNT 237 L + I + +YD N + +++ V+V + Sbjct: 595 LNDLFFKIIAELKLTTPIIYDADLIKLEPENDKDNINLLRSRGAHVNVLAKNQQGLKDIF 654 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 L++ + I + + ++ G + + Sbjct: 655 KLVSISHTDNFFNSPKIFKEKLKEFKEKNNILIGAGCVNSEVFETARIGTDEKLEEIIPF 714 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357 + P+ K + +H+ ++R A + YT Sbjct: 715 YDYIEIQPLSVYKNLINDNQLEEHELIDVIKKIIRLAKKYNVMLVATSDAHYTRPELKKI 774 Query: 358 SQLYDGFFADVDRQIM-DRILRTAP-EQLSTLNLPFSDRRLPELFF 401 +Y + L ++ L E + Sbjct: 775 RDVYINAKGLGGSRHPLFSFRNKNKLIDYPDQYLRTTNEMLKEFAW 820 >gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] Length = 264 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207 >gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 264 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207 >gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 264 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207 >gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 264 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207 >gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2] Length = 255 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198 >gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198 >gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 255 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198 >gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 255 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198 >gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140] gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 255 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198 >gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02] gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18] gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19] gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1] gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 255 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198 >gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 264 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207 >gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 264 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207 >gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] Length = 246 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 59/208 (28%), Gaps = 30/208 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + ++ + +N FD + F + D + Sbjct: 69 HGIADEFLLDKP-TFADVADEFLEYIKGAE---LVIHNASFDIGFMDYEFSKLNRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARRMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206 D + + + + + + Sbjct: 169 LDAQILADVYLTMTGGQTSMKFSMENES 196 >gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1] gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1] Length = 849 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI+D E+ G DV D Q A + + E S E F KP+ ++ + G + Sbjct: 495 IVIFDVESTGLDVTQDEVIQIAAIEL-VNGEYTRSFE-RFIKPSHSV---GDSALVHGFS 549 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 G E + F ++ +N+++D + R ++N Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVE---GALLIGHNVQYDLKIVSSQMNRLGL-----MFEN 601 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D LD++R +Y + KL ++ G+ H H+A D+ AT Sbjct: 602 SMGYYDTLDIVRRLY-------------PDLKNHKLDTVSAYVGVSHEPTHNAMDDILAT 648 Query: 185 LALVWL---IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 ++ + + + + + + + ++ + A + Sbjct: 649 KDVLVKSMDLLMTHHENRKKVMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKG 702 >gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909] gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909] Length = 849 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI+D E+ G DV D Q A + + E S E F KP+ ++ + G + Sbjct: 495 IVIFDVESTGLDVTQDEVIQIAAIEL-VNGEYTRSFE-RFIKPSHSV---GDSALVHGFS 549 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 G E + F ++ +N+++D + R ++N Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVE---GALLIGHNVQYDLKIVSSQMNRLGL-----MFEN 601 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D LD++R +Y + KL ++ G+ H H+A D+ AT Sbjct: 602 SMGYYDTLDIVRRLY-------------PDLKNHKLDTVSAYVGVSHEPTHNAMDDILAT 648 Query: 185 LALVWL---IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 ++ + + + + + + + ++ + A + Sbjct: 649 KDVLVKSMDLLMTHHENRKKVMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKG 702 >gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] Length = 829 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 28/187 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G A D + A + + + E + +P E + G + Sbjct: 461 LVVFDVETTGFSGAADEVIELAAIAL-EHGQIREEFNRYIRN----TVPVGETQQVHGYS 515 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 G + +F ++ +N+ FD R + W Sbjct: 516 DDFLATHGQP---AATVFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPSPRW-- 570 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + R + ++KL LA + + H A D T Sbjct: 571 ------------------EDTLNLAHRFIQSENYKLATLASSLNLSATPTHRASDDTRTT 612 Query: 185 LALVWLI 191 +AL+ I Sbjct: 613 VALLEAI 619 >gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] Length = 203 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 36/226 (15%) Query: 2 TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G + R + V + + ++ + + Sbjct: 1 MERIAVIDFETTGITPSSHCRATEIG-VVILERGHIVDRYQSLM---NAGVRVPAFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E +++F T + +N FD + Sbjct: 57 TGISNAMLRSAPPAER-VMNEVNEFV---GTTPLMAHNAAFDQKFWDYELG--------- 103 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 L + F+ + A + KL L + H AH A A Sbjct: 104 -----------LIRRTRLQKFACSLLLARRLMPAAPNHKLGTLNSYAQLPHTGQAHRALA 152 Query: 180 DVYATLALVWLIREKKPKLF------EYLYDYRNKNQLRKLIDIQN 219 D L + + + L K K+ + Sbjct: 153 DAEMAANLTTHLARELRQTHGLRELSHDLLCTLQKVPAAKINEHLK 198 >gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 327 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + P P V+I G+T Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F S + ++ +N FD + R Sbjct: 77 SDALEGAPL-FQDIAD---EFSSRLDGRVLVAHNAVFDWQMIAREYARAGR--------- 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + KL+ LA G+ AH A D Sbjct: 124 ----------VAPVSQRLCTIVLSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 173 Query: 185 LALVW 189 Sbjct: 174 AEAFR 178 >gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC BAA-895] gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895] Length = 246 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + F + +N FD + F + + Sbjct: 69 HGIADEFLLDKPV----FADVVDDFLEYIRGAELVIHNASFDIGFMDYEFAKLSRGIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L + R ++ L L I++ H A Sbjct: 125 SEF--CKITDSLALARRMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILADVYLAMTGGQTSM 188 >gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] Length = 241 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 28/196 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D E G + DR + RV + + V + Sbjct: 1 MLTDYVVIDLEMTGLNAKTDRILEAGAARVRGN-VVTATFSEI---INPKRKLPEKVVSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + A + +A + FF I+ N+ FD + + + Sbjct: 57 TGITNEMAAQGKETDATLAA----FFDFIGEDILVGQNVIFDYSFLKQWAVNH------- 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D L + R L L GIE V+AH A D Sbjct: 106 KRTFERNAVDTLKLARKF-------------LPQEQKKDLASLCSYFGIERVHAHRALDD 152 Query: 181 VYATLALVWLIREKKP 196 V T + +++ Sbjct: 153 VMETQQIFEQMQKMYE 168 >gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385] gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385] gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 247 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ +F + +N FD + F Sbjct: 67 AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G + D + + +P L L GI+ H Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. race 4] Length = 259 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G V R + V E I F D D A+ + Sbjct: 11 VVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. B076] Length = 259 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G V R + V E I F D D A+ + Sbjct: 11 VVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703] Length = 260 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 61/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + +F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TFADIAPEFIEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + L + +++N Sbjct: 166 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNN 197 >gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] Length = 481 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 47/186 (25%), Gaps = 28/186 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV +D ET G D Q VRV T + P + I +T Sbjct: 277 FVAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYV--NPGRPIPPASTEIHRVT 334 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++F F ++ +N FD + R + Sbjct: 335 DGHVRGA----SDFVTVGRNFHHFARDAVLVAHNAPFDLAFLHRFADRMGVEW------- 383 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 +LD + Q L L I + H A D Sbjct: 384 ---THPVLDTVLLSAVVFGTTEQ----------HSLDALCDRLAITIPDNLRHTAFGDAQ 430 Query: 183 ATLALV 188 AT + Sbjct: 431 ATAEAL 436 >gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 930 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F + D ET G DR QF V + E +++ +T Sbjct: 8 ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLSVTNLT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + ++ +I + + +N+ FD + +++ Sbjct: 64 GIDQKMVAGQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL--- 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D +++ + + S+KL+DL + I+H N H A +D Sbjct: 117 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 160 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 Y T L+ I +K L + + Sbjct: 161 YGTAVLLLKIIDKLASLPQATLN 183 >gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 334 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + P P V+I G+T Sbjct: 20 YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 73 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + Q + ++ +N FD + R + Sbjct: 74 SDVLAGAPL-FQDIADEFSQRL---DGRVLVAHNAMFDWSMIAREYARARRTAPTRQ--- 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL+ LA G+ AH A D Sbjct: 127 ---RLCTIALAKELRL-------------PLPNHKLESLAAHFGVVQRQAHHALDDARVL 170 Query: 185 LALVW 189 Sbjct: 171 AEAFR 175 >gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] Length = 195 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 17/189 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D+ V V+ + +E + +P + + E+ + G+T Sbjct: 22 LAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLTD 81 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 VEAE + + + + + R + + D + + Sbjct: 82 DMVATG--VEAEVA--VGKLLEALRGRKLLAHYARMEVGF---------LDPLCRKYFDA 128 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + D M Y D I +R+ +L L GI AH A D A Sbjct: 129 RFDVPVADTMTREY----DAILRANREPVRDELRLWSLCDKYGIPRFKAHHAFNDALACA 184 Query: 186 ALVWLIREK 194 + + Sbjct: 185 LVWLAQESR 193 >gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] Length = 341 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + + P P V+I G+T Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTL---VNPERDPGP--VWIHGLT 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + + ++ +N FD + R + Sbjct: 73 SDVLEGAPL-FPEVAEELSARLADR---VLVAHNAAFDWSMIAREYARASVVAPVEQ--- 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL LA G+ AH A D Sbjct: 126 ---RLCTIALAKELRL-------------PLPNHKLASLAAHFGVVQQRAHHALDDARVL 169 Query: 185 LALVW 189 Sbjct: 170 AEAFR 174 >gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 246 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ I +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVIDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + + + + Q Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200 >gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] Length = 247 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ +F + +N FD + F Sbjct: 67 AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G + D + + +P L L GI+ H Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 242 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + A R + V V + L D EA+ Sbjct: 11 IILDTETTGMNQAAGAIYLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQLIDEEAIQ 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ + AE ++ +F + + +N FD + + F Sbjct: 68 VHGISNEYVANKPK-FAEIAQSFIEFI---DGAEVVAHNASFDISFMDHEFG--LLRPKG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L + + ++ + L L GI++ H A Sbjct: 122 PKTADICGILDTLAIAKYLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + L+ + K Sbjct: 168 LLDAEILADVYLLMTGGQTKF 188 >gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302] gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302] Length = 286 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 24/198 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V++D ET G D+ DR Q + ++V + E + + Sbjct: 5 LKKPLVVFDLETTGLDIVNDRIIQLSFIKVCPDGTE-ERGDHL---INPGKHIPDMVSAL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +K + S + + F G+N+ RFD F R D Sbjct: 61 TGIDDEKVKDAP-SFKQLSATLAEKFK--GCDFAGFNSNRFDVPMLAEEFLRAGIDFDF- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + + E AH A D Sbjct: 117 ----------------SKCRLIDAQTIFHKMEKRNLAAAYEFYCGRKMEEDFEAHRADQD 160 Query: 181 VYATLALVWLIREKKPKL 198 AT ++ + Sbjct: 161 TEATYRVLLGQLDMYSAD 178 >gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium violaceum ATCC 12472] Length = 239 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R +FAG+ + + + + DPEA + GI+ Sbjct: 4 IILDTETTGLDPQQGHRIIEFAGLEM-VGRKLTGKHLHLY--IHPEREIDPEAQRVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V A+ + I F I +N FD + F + + Sbjct: 61 LEFLAGKPV-FAKVAHEIADFLRDAELII---HNAPFDVGFLNAEFAKAGIEPVG---KL 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 S D L R ++ L L I+ N H A D Sbjct: 114 CASVIDTLAEARDMFPG--------------KRNSLDALCDRFEIDRSNRTLHGALVDCE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLSEVYLWMTRGQES 174 >gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725] gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725] Length = 1118 Score = 81.8 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 28/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D+ET G + DR + V +D ++EST +P D F+ Sbjct: 4 SKRYAVVDFETTGFG-STDRVIEIGVVLLDHN-REVESTWETLVQPQRDIPNS----FVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITP + + E + + N + +N F+ + + F + Sbjct: 58 RITPTDVVDAPL-FGEVAGEFFELL---NGRTVVAHNAPFEVRFLQREFSNLGVAWPNY- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G D + + Y L+ GI + H A AD Sbjct: 113 ---GAWVVDTKRLFQQTYPGEGTT--------------LEHALEVVGITNARPHSALADA 155 Query: 182 YATLALV 188 AT L Sbjct: 156 LATAELF 162 >gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 264 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 32 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPQFVAELTGISDG 86 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 87 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207 >gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 255 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G ++ DR + A V+ + E + +TGI+ Sbjct: 23 VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPQFVAELTGISDG 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V AE + + C++ +N RFD + ++ F+R Sbjct: 78 MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173 Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209 + + + N Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198 >gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] Length = 245 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V + KP D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRHYHVYVKP--DRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + + +F + +N FD + + F D + Sbjct: 66 HGISDEFLADKP-TFDQIADEFIEFIRGGE---LVIHNAAFDIGFMDHEFRMLQQDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCAITDSLLMARRLFPG--------------KRNNLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAEILAEVYLAMTGGQTTM 185 >gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Brachybacterium faecium DSM 4810] gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Brachybacterium faecium DSM 4810] Length = 238 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 16/194 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G +VA DR A V + E+ + P + +P+P A + GI+ + Sbjct: 16 FDTETTGTNVARDRIVTVALVHSVGPGREGETVATWLIDP-EMEIPEP-AQRVHGISTEH 73 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A G+ AE + + + NI FD N R + G Sbjct: 74 ARAHGMKAAEALDEVAALIAEALAKEVPLVAFNISFDLAILENELTRLGLPTLA--QRLG 131 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184 + ++D + L D+ G+E H A DV AT Sbjct: 132 HDIAPVIDALVIDRGV---------DRYRKGKRTLTDVLAHYGLEQDGRLHTADVDVSAT 182 Query: 185 LALVWLIREKKPKL 198 L ++ I K PK+ Sbjct: 183 LDVLRAITLKYPKI 196 >gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana] Length = 316 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 27/224 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G +R + A + F +P A I GI Sbjct: 110 TVIVSDLETTGLHRENERIIEIAAQDIAGGG-----YSTFQTLVNPGVVPITNA-HIHGI 163 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 R V E ++ P + + +N FD + N F R Y+ Sbjct: 164 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 223 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 + D L + R ++ S L+ LA +AH Sbjct: 224 -----PHNWLLLDSLPLARENMKSVEPTVKL--------SSSLEALADYYSLTREGDAHR 270 Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 A +DV + L + K L + + + + + Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314 >gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25] gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25] Length = 203 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 36/226 (15%) Query: 2 TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + + + ++ + + Sbjct: 1 MERIAVIDFETTGITPNSHCRATEIA-VVILERGQIVDRYQSLM---NAGVRVPGFIEQL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ E +++F T + +N FD + Sbjct: 57 TGISNAMLRSAPPAER-VMNEVNEFV---GTTPLMAHNAAFDQKFWDYELG--------- 103 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 L + F+ + A + KL L + H AH A A Sbjct: 104 -----------LIRRTRLQKFACSLLLARRLMPTAPNHKLGTLNAFAQLPHTGKAHRAMA 152 Query: 180 DVYATLALVWLIREKKPKLF------EYLYDYRNKNQLRKLIDIQN 219 D L + ++ L K K+ + Sbjct: 153 DAEMAANLTAHLAQELRSTHGLRELSHELLCTLQKVPAAKINEHLK 198 >gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG 18818] Length = 233 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 29/192 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G + +RV + + +ES E + P +TGI Sbjct: 52 FVFVDIETNGAKPQSSEIIEIGALRV-KNSQILESFESYVYAP----FVPENITELTGIR 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R +F + +N+ FD + +N Sbjct: 107 QEDIQNAPQS-KEVLRAFREFL---GGGVFVAHNVNFDFSFLDYHLRQNGLFGLLN---- 158 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D+ + + + + L L GI +H A AD + Sbjct: 159 --PKLCTIDLAK--------------KTILSKRYALSYLNEFLGINTAMSHRAYADALTS 202 Query: 185 LALVWLIREKKP 196 + + P Sbjct: 203 FRIFEIAISMLP 214 >gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7] gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7] Length = 246 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + F D D A+ + GIT Sbjct: 4 VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +F I +N FD + N + R Sbjct: 61 NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + + L L G+++ H A D Sbjct: 116 YCTVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 162 ILADVYLAMTGGQTS 176 >gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] Length = 237 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 26/198 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M ++ D ET G D R + V + F + EA+ Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVEL-MNRRLTG--NNFHVYINPQRSIEEEAID 57 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + + + ++ + + +N FD + N F Sbjct: 58 VHGITNEFLRDKPL-FRDIAQEFFDYIKDAE---LVIHNAPFDIGHMDNEFA-----LLN 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + N + +LD ++ P L L +++ H A Sbjct: 109 QGYQNTHDFCGVLDTLKMARDLHPGQKN-----------NLDALCRRYDVDNTKRTLHGA 157 Query: 178 KADVYATLALVWLIREKK 195 D + + + Sbjct: 158 LLDSEILADVYLAMTGGQ 175 >gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 905 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 68/203 (33%), Gaps = 26/203 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G D D + A VR E E+ + F KP+ P +TGI+ Sbjct: 7 FVALDLETTGLDFEKDEIIEVALVRF-ENGEPKENLD-FLVKPSA-VELRPFIETLTGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A + +I F I +N FD + + F + + Sbjct: 64 KADLESA-SDFATIAGQICSFV---GDLPIVAHNAVFDSKFLKQTFTKVGISY------D 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + WD L + R + + +L L IE AH A D A Sbjct: 114 SHVFWDSLTLSRIAF-------------QDVPNHRLDTLVQELNIERSRAHRALPDADAC 160 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 L EK + ++YD + Sbjct: 161 GRLFVKALEKISTMDPWIYDALS 183 >gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 900 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 64/200 (32%), Gaps = 27/200 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G + D Q V + I + D P +T I Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVREN-KIIGTYHS---MIKTDLEIPPFIQALTSIE 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + I++ + CI +N+ FD + + F + Sbjct: 62 EDMLNQAPYFH-EIAEDIYKQI---DGCIFVAHNVAFDLNFIKKSFKQCHI------NYR 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ + S++L +LA A+GI NAH A D T Sbjct: 112 PKKVMDTLEL-------------FKVAFPTDKSYQLSELAEAHGIILNNAHRADEDAATT 158 Query: 185 LALVWLIREKKPKLFEYLYD 204 L+ + EK L Sbjct: 159 AQLMIIAFEKFESLPLDTLK 178 >gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera] Length = 340 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 27/210 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G A DR + D + + + + +P+P + GI Sbjct: 135 TVIVFDTETTGLSRANDRIIEIGLQ--DLGGGENSTFQTLVN--PERIVPNP---HVHGI 187 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 T R V + + Q+ P I + +N FD + N F R Sbjct: 188 TTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCN--- 244 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 D L + R + D + LQ L I AH Sbjct: 245 --TEVPPNWRFMDTLPLAREFIK--------SAGSDLPSGASLQALREYFRIPLVGPAHR 294 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206 +DVY ++ ++ L D Sbjct: 295 VLSDVYTLSQILQMLTFNLKVSVANLLDRS 324 >gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana] Length = 316 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 27/224 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G +R + A + F +P A I GI Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGG-----YSTFQTLVNPGVVPITNA-HIHGI 163 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 R V E ++ P + + +N FD + N F R Y+ Sbjct: 164 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 223 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 + D L + R ++ S L+ LA +AH Sbjct: 224 -----PHNWLLLDSLPLARENMKSVEPTVKL--------SSSLEALADYYSLTREGDAHR 270 Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 A +DV + L + K L + + + + + Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314 >gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana] gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana] gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana] gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana] gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana] gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana] gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana] gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana] gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana] gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana] Length = 316 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 27/224 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G +R + A + F +P A I GI Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGG-----YSTFQTLVNPGVVPITNA-HIHGI 163 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 R V E ++ P + + +N FD + N F R Y+ Sbjct: 164 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 223 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 + D L + R ++ S L+ LA +AH Sbjct: 224 -----PHNWLLLDSLPLARENMKSVEPTVKL--------SSSLEALADYYSLTREGDAHR 270 Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 A +DV + L + K L + + + + + Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314 >gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM 6946] gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum DSM 6946] Length = 260 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 29/216 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F I D E G ALD + V V + + + D LP+ V +TGI Sbjct: 70 KFCIVDIEANGSKPALDAIIEIGAVMV-EKGKIVGEFSSLA---KTDVLPE-SIVQLTGI 124 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ F + +N+ FD Y+ + + Sbjct: 125 TLEELSFAP-SLNSVLEGFRLFIKD---AVFVAHNVNFDYYFISHSLEMAGFGPLLN--- 177 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D +D+ R A + L LA GI N H A D A Sbjct: 178 ---RRLDTIDLARKC--------------IEAPKYGLSALAEHLGITFENHHRALYDAKA 220 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 T ++ + P + + ++ + + Sbjct: 221 TTEVLLHVFNNLPHEVQTVEQLIAFSRPQNQRKKKK 256 >gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae T3T1] Length = 253 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D L DP+A+ + Sbjct: 8 IVLDTETTGMNQIGAHYEGHCIIEIGAV---EMINRKYTGNNFHIYIKPDRLVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + ++ ++ I +N FD + F + D Sbjct: 65 HGITDEMLADKP-DFKTIAQDFIEYIRGAELLI---HNAPFDVGFMDYEFRKLGLDIKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 120 --TDICLVTDTLQMARQMYPG--------------KRNSLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + + + LF+ Sbjct: 164 LDAEILADVYLSMTGGQTSLFDE 186 >gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 280 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 29/200 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V +D ET G D+ R + A +R + + DP+A + GI Sbjct: 15 LVFFDVETTGLDLQNGHRICELAMLR-REHRQITGQINTL---INPERELDPQASQVNGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + AE + ++ Q + +N+ FD+ + R Y Sbjct: 71 RAEDLQSAPR-FAELTVQVVQL---SQQAVRVAHNLPFDESFLNMELARAGYPPL----- 121 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + S L LA + G+ H A DV Sbjct: 122 -TGPALDTLELARRLGI-------------RRGSLSLGALATSFGLPT-PTHRAMDDVLT 166 Query: 184 TLALVWLIREKKPKLFEYLY 203 AL + K Sbjct: 167 LHALFDRLVAKLADYGVTTL 186 >gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309B] gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309A] Length = 289 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 34/227 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ +D ET G D D Q + R +++ + DY+PD E +TG Sbjct: 6 KEFIAFDIETTGLDFHQDAVIQISAARY-VDGIEVDYFDTL---VNSDYIPD-EITKLTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + L E + + +T ++G+N FD + + Y Sbjct: 61 ITNDQVLNAP-TLDEVMPYLFDYL--GDTILVGHNIKSFDFPFLKAKGYN---------- 107 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +R GA + +L L L GI+ +H+A DV Sbjct: 108 ------------IAEGHEIYDTRYFAATRKHGAVNNQLTTLKLLFGID-AISHNALNDVR 154 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 + + + + +P+ K+ L + TP Sbjct: 155 ISAIVFMELLKIEPQEKSSTLK---KSSLDSFELDDDTTPFFEGMSF 198 >gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 257 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 57/216 (26%), Gaps = 30/216 (13%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F D EA+ + Sbjct: 10 VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V AE + +F I +N FD + F + Sbjct: 67 HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L V R +Y L L GI++ H A Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L + L Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATATHENVADL 202 >gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] Length = 236 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 26/186 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + A + GI+ Sbjct: 5 IVLDTETTGTDAKNGDRLIEIGCVEL-INHVQTGKF--YHQLINPQRAVSEGAFAVHGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+ + F + + +N FD + F R Sbjct: 62 DAMLADKPV----FADVVDAFVAFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIP 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + + L L G++ H A D Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161 Query: 183 ATLALV 188 + Sbjct: 162 ILAEVY 167 >gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] Length = 246 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + F D D A+ + GIT Sbjct: 4 VVLDTETTGMPVTDGHRIIEIGCVEL-EGRHLTGRH--FHVYLQPDREVDEGAIAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +F I +N FD + N + R Sbjct: 61 NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 S D L + R + + L L G+++ H A D Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 162 ILADVYLAMTGGQTS 176 >gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC 51449] gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 266 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 29/199 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + V D ET G + + ++V + E I+ E + D +P+ +TGI Sbjct: 72 NLVFVDIETNGAKPQQCQIIEIGALKV-KGGEIIDKFESYVYA---DEVPE-NITQLTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E F T + +N+ FD + + Sbjct: 127 CQADIAYAP-SIKEVLGEFRAFL---GTDVFVAHNVNFDYGFVDYHLRQCGLFGLLNP-- 180 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 I+ + + + L L GI H A AD Sbjct: 181 ------------------KLCTIELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADALT 222 Query: 184 TLALVWLIREKKPKLFEYL 202 + + + P + + Sbjct: 223 SFRVFEIASMMFPPFVKSM 241 >gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] Length = 230 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 56/203 (27%), Gaps = 29/203 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V W + + E + + EA + G+ Sbjct: 4 IVLDTETTGFDPEQGDRIVEIGAV---ELWNHVPTGETYHVYINPERSMPQEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V + +R +F + +N FD + + W Sbjct: 61 DDFLRDKPV-FRDVARGFVEFVKDAK---LVIHNASFDMKFINAELGWLNIPAIPWDQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L GI++ H A D Sbjct: 116 ----IDTLAIARQRFPGSPA--------------SLDALCRRFGIDNSARTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDY 205 + + + F Sbjct: 158 ILAEVYLELIGGRQPDFALSAST 180 >gi|318057465|ref|ZP_07976188.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076919|ref|ZP_07984251.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 244 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V + S A + GIT ++ Sbjct: 12 FDLETTGIDVEADRIVT-ACVVQCGGGQDTASAVWLA---DPGVEIPEGAAKVHGITTEQ 67 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E ++ + + + N +D R+ + Sbjct: 68 ARAEGRPAPEVVEQVVAALAQVARDGVPVVAMNASYDLTLLDREARRHGVQPLVDIVGDQ 127 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D + + + F G KL+DL + AH A AD A Sbjct: 128 LRVIDPRVLDKRVDKFRRGG------------RKLEDLCRTYSVGLDGAHSADADAIAAC 175 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQL 211 + W I + ++ Q+ Sbjct: 176 RVAWRIATTHTAIGAASLGELHEQQV 201 >gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae EF01-2] gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae EF01-2] Length = 237 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G DR + V + + +A+ + GI+ Sbjct: 5 IVLDTETTGLSADSGDRIIELGCV---ELLNRKLTGNNLHLYFNPGRDSHEDALKVHGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I Q+ I +N FD + + + Sbjct: 62 NEFLKDKPR-FAELVDDILQYLQGAELII---HNAAFDVGFLNKELELAGHPALAHCV-- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + + +Y L L G+++ H A D Sbjct: 116 -ERVTDTLAMAKELYPG--------------KRNSLDALCDRLGVDNSGRTLHGALLDAE 160 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 161 LLADVYIHLTRGQK 174 >gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus ST398] Length = 897 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-HIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + + I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAEEIYDKIKD---CIFVAHNVDFDLNFIKKAFKNCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] Length = 247 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 51/203 (25%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + F + +N FD + F Sbjct: 67 AIEVHGITDEFLRDKPE-YKDVHDEFLDFIKDAE---LVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G S D + + +P L L GI+ H Sbjct: 118 ------KLGGSVVKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 328 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 73/279 (26%), Gaps = 30/279 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + P P V+I G+T Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + ++ +N FD + R ++ Sbjct: 77 SEALEGAPL-FTDIAEEFAARLADR---VLVAHNAVFDWQMIAREYARARREAP------ 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + KL+ LA G+ AH A D Sbjct: 127 -------------VRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVL 173 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L + D G + AS + P Sbjct: 174 AEAFR-PSLWAAAAGGVRLPLLECRPLTEWSDRPVPRQQSGGYGGYRASSWRPSRKRPAC 232 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 +P G L MRV D+ + L E Sbjct: 233 PYPNPGRYEPGKRLKQGMRVAFSGDTSTERELLEDRATE 271 >gi|209546045|ref|YP_002277935.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538902|gb|ACI58835.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 326 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 60/217 (27%), Gaps = 32/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + D + V D + ++ E +TGI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFDDDGGIGDIVGIYGGLQQPSRPIPAEITRLTGI 134 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + S I +I +N FD + Sbjct: 135 TDAMVEGQVIDMWSLSALIE------PADLIIAHNAGFDRPFCEA--------------- 173 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A A++ + G KL L G H H A D +A Sbjct: 174 --------FSTIFAGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHDG-HRAVDDCHA 224 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ + F LY ++++R + Sbjct: 225 LLEILDREQGDGESPFAELYRASQRSRIRIFAEHSPF 261 >gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori str. 301020] Length = 259 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITLHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 247 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 31/204 (15%) Query: 2 TNHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 + ++ D ET G + R + V + + F D P Sbjct: 9 QHRIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRQIQP 65 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 EAV + GIT + + E+ +F + +N FD + F Sbjct: 66 EAVLVHGITDEFLVDKP----EYQDVHQEFLEFIKGAELVAHNAPFDTGFMDYEFE--ML 119 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173 ++ ++ D L + + I+ L L GI+ H Sbjct: 120 NAQIGKTEDYCKVTDTLAMAKKIFPG--------------KRNNLDILCERYGIDNSHRT 165 Query: 174 AHDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189 >gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] Length = 229 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + ++ + +++ C + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCVEI---LNRMPTGQIYHCYINPERDMPAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE + F + + +N FD + R Sbjct: 61 AEFLSTKPL-FAEVAEEFLAFIAD---APLVIHNASFDIGFINAELARLSQPPIPR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + S +L DL I++ H A D Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|153836296|ref|ZP_01988963.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|149750571|gb|EDM61316.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] Length = 247 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 57 FVSVDFETTGLNAEEDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 111 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + I + ++ + R F+ + + Sbjct: 112 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 158 Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178 ++ ++D + YA W S +L G+ H A Sbjct: 159 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 218 Query: 179 ADVYATLALVWLIREKK 195 D AT L + Sbjct: 219 TDALATAELFQAQLQYH 235 >gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] Length = 236 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D A R + V + + + + + EA+ + GIT Sbjct: 4 IVLDTETTGIDPAEGHRIIEIGCVELME-RQITGRH--YHVYINPEREVEAEAITVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + +F + +N FD + + F R Sbjct: 61 NEFLADKPK-FAAIADEFFEFIKGAE---LVIHNAAFDIGFMDSEFARL---KPVRRTTE 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + L L GI++ N H A D Sbjct: 114 HCGVVDSLAIARKKHPGQKN--------------NLDALCKRYGIDNSNRELHGALLDAE 159 Query: 183 ATLALVWLIREKKP 196 + L+ + Sbjct: 160 ILADVYLLLTGGQT 173 >gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa UCBPP-PA14] gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa UCBPP-PA14] Length = 246 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + F D D A+ + GIT Sbjct: 4 VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +F I +N FD + N + R Sbjct: 61 NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVSE 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 S D L + R + + L L G+++ H A D Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 162 ILADVYLAMTGGQTS 176 >gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae 642] gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7] gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris str. M302273PT] Length = 259 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 247 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 51/203 (25%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + F + +N FD + F Sbjct: 67 AIEVHGITDEFLRDKPE-YKDVHDEFLDFIKDAE---LVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G S D + + +P L L GI+ H Sbjct: 118 ------KLGGSVVKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 2250] gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 259 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae B728a] gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 259 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] Length = 259 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 61/215 (28%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 14 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F + +N FD + F D + Sbjct: 71 HGISDEFLADKP-TFADITPEFLDFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + +++N + Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNDSSE 205 >gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] Length = 583 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 65/223 (29%), Gaps = 28/223 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G DR +FA VR D F + + ++ GI Sbjct: 382 TILVFDIETTGFSRREDRIIEFA-VR-DLMG---GKNSTFQTLINPEK--EVRNAYVHGI 434 Query: 64 TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + R V E + Q+ + +N FD + F R + Sbjct: 435 SNSMLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEM 494 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 D L + R + S +S L++L I +AH Sbjct: 495 -----PGDWLFVDTLPIARQL---------VDSDGSKLSSVSLKNLRERYNIPLTGSAHR 540 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 A DV ++ + + L + + + Sbjct: 541 AMQDVTTLCYVLQKLTFELKLTVPQLLEKSFQASDLPATRAEK 583 >gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 647 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 28/190 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A V + E+ P P V + G+T ++ Sbjct: 19 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTL---VDPGCDPGP--VDVHGLTRER 73 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + R+ ++ +N +FD + + F R Sbjct: 74 LSGAPA-FGQIAGRLGAMLQDR---VLVAHNAQFDYDFLAHEFARARLYLPVT------R 123 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + D KL LA G+ AHDA D + Sbjct: 124 RLCTLALNRQV-------------DPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGI 170 Query: 188 VWLIREKKPK 197 + + Sbjct: 171 FRATLREAAR 180 >gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] Length = 248 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 54/200 (27%), Gaps = 31/200 (15%) Query: 3 NHFVIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 N V+ D ET G R + V + F D DPEA Sbjct: 6 NRIVVLDTETTGMSGTSEPQIGHRIIEIGAVEL-VNRRYTGR--NFHVYLQPDQQVDPEA 62 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V + GIT + E ++ F + +N FD + F Sbjct: 63 VAVHGITDEFLADKPR-FKEVAQEFINFIKGAE---LVIHNAPFDVAFMNQEFALQGQ-- 116 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--H 175 + D D L V R +Y L L GI++ H Sbjct: 117 -ALTTDQLCKVTDSLKVARQLYPG--------------KKNSLDALCSRLGIDNSKRTLH 161 Query: 176 DAKADVYATLALVWLIREKK 195 A D + + + Sbjct: 162 GALLDAEILADVYLAMTGGQ 181 >gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] Length = 539 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 57/221 (25%), Gaps = 31/221 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A D Q A V+ + + F +T I Sbjct: 83 LVFLDTETTGLSFADDSLTQIAAVKRRADG----TFDTFCTFVHPPKPIPAHISKLTNIY 138 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + QF I +N FD + + Sbjct: 139 NADVAAAPKP-KEAVLALAQFV---GGAPIVAHNAAFDKTFV---------EGVLQHQTV 185 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++ D L + + + KL+DLA+ G H A D A Sbjct: 186 SSTWIDSLALSKIAFPSFNT-------------HKLEDLAVLFGCAR-VTHRADDDCKAL 231 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + + +L E L + + M V Sbjct: 232 ADVWHYMMRALCQLPESLVHLFAHMHEDDGMRSEWMYAGVF 272 >gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 1482 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 38/230 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G LD +F + + + + + ++ +T IT Sbjct: 436 VFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDIL---IKPKAKLKAFTQKLTNITE 492 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + ++I++ I+ +N FD + + Y + Sbjct: 493 KMLEDKPSIE-QAFKQINEIIKD---AILVAHNANFDFTFLSYWSEKLGYGKLENT---- 544 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183 D L + R IY S +L LA I + AH D Sbjct: 545 --IIDTLTISRIIY-------------PDLKSHRLGSLAKRVNISYDPSIAHRGDYDADI 589 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + + + + R K ++ D + P+ + + Sbjct: 590 LADIYERMLD----------ETRKKIKIITDSDWNKIDPINYADNLNYYK 629 >gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 239 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 29/201 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D DR + V V+R F D D EAV + GI Sbjct: 4 IVLDTETTGLDWRTGDRVIEIGCVELVNRSL--TGRH--FHVYINPDRGIDAEAVAVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A F + +N FD + Sbjct: 60 TEEFLADKPR-FAGIVEAFEDFVRDAE---LVIHNANFDVGFLNCELGLLGRP------- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 + D+L A D ++ + L L I++ + H A D Sbjct: 109 ----KLDVLC------AGVIDTLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDA 158 Query: 182 YATLALVWLIREKKPKLFEYL 202 + + + L L Sbjct: 159 ELLAEVYLAMTRGQESLMIAL 179 >gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 239 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 28/195 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + F + EA + G+ Sbjct: 4 IVLDTETTGFDPDTGDRIVEIGAVELMNHL-PTGR--TFHVYINPERPMPQEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + F +I +N FD + + + +S Sbjct: 61 DDFLRDKPK-FAEIAADFVAFIGDDAKLVI--HNASFDMKFLNAELRMVGHATMPYS--- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L++ R+++ + + L L I++ N H A D Sbjct: 115 --RAVDTLEIARSMFPGAQN--------------SLDALCRRFRIDNSNRTLHGALLDSE 158 Query: 183 ATLALVWLIREKKPK 197 + +R + Sbjct: 159 LLAEVYLALRGGRQP 173 >gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax marinus SJ] Length = 295 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 28/216 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G +D+ + + ++V E++ + + I GIT Sbjct: 20 IVALDLETTGLSPLIDKVIELSAIKVTPYGEEV--FDEL---IDPKIEIPKFTIDIHGIT 74 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +F + + + +N +FD + ++ + Sbjct: 75 NDMVQGK----RTLDKVLPEFINFIGSLPLVAHNAKFDLGFIVFGMHQIGLPLHESH--- 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G+T+FKL L I N H A D A Sbjct: 128 ----------------VYCSCKFSRYALRGSTNFKLSTLTTELEIPLENHHRALDDAIAC 171 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L + K + + + +L+ + Sbjct: 172 LKVYERGLRVFKKPDRKILNEGHLFKLKDFDKQDDF 207 >gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] Length = 240 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 26/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G +V+ R + V + + F + D A+ + GIT Sbjct: 4 IVLDTETTGLEVSQGHRIIEIGCVEM-ENRQLTGRH--FHRYINPERDIDAGAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V + ++ F I +N FD + + Sbjct: 61 ATFLADKPV-FSAVAKDFIDFVDGAELII---HNAPFDIGFLDSEL-------------- 102 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 SRWD + A D + L L G+++ H A D Sbjct: 103 --SRWDASALPLAQRCDITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAE 160 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 161 ILADVYLTMTGGQT 174 >gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25] gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25] Length = 226 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 16/194 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + +I D ET G +F + + ++ +A I Sbjct: 27 TENAIIIDTETTGLGAD-AEIVEFTAICANSGEVIVDEL------VKPTCSIPADATAIH 79 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + FS R + II YN+ FD ++ +Y S Sbjct: 80 GITNEDVKDAPDFHLMFSNRFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 136 Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178 + ++ + M F W + L + ++ + AH A Sbjct: 137 VHDLFFKFCVPQCAMLWYAEFYG---VWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRAL 193 Query: 179 ADVYATLALVWLIR 192 AD T L+ + Sbjct: 194 ADCEMTRRLIHAVN 207 >gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000] gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000] Length = 237 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 53/190 (27%), Gaps = 29/190 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D DR + + V + + +C P D EA + G++ Sbjct: 5 IILDTETTGFDPKTGDRLVEIGCIEV-VDFMPTGRSFHEYCDPLRDM--PAEAEKVHGLS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + R F ++ +N FD + + Sbjct: 62 SAFLTGKPKFH-EIADRFLDFV---GDSVVVAHNAAFDRQFVNFELEKCGKAPIHEE--- 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 R + + ++P L L I + H A D + Sbjct: 115 -----------RWVDTLAMAKKRFPGMY-----NSLDALCKRFKISLESRDKHGALIDAH 158 Query: 183 ATLALVWLIR 192 + ++ Sbjct: 159 LLAEVYLELQ 168 >gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] Length = 218 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 46/174 (26%), Gaps = 30/174 (17%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D+ET G A R + A V + ++ + P +TGI Sbjct: 6 IAVIDFETTGMMPAQGARATEVAIVLM-EGGRVVDRYQSLM---RTGVRIPPFITQLTGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + + +N FD + + Sbjct: 62 TNAMVEAAP----DAAAVMREAARFVGDAPMVAHNAAFDRKFWQAEMQHAG--------- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 + A + F+ + A S L L G+ AH Sbjct: 109 -----------LAAPHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLPRAGRAHR 151 >gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] Length = 228 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + + + EA + G+ Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGKTYHQYINPERMMPDEAFQVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F + +N FD + W Sbjct: 61 DEFLRDKPK-FAEVGQAFLDFIGDAK---LVIHNAAFDIKFLNAELKWMNLPQIPWEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L GI++ + H A D Sbjct: 116 ----IDTLAIARKRFPGSPA--------------SLDALCRRFGIDNASRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] Length = 1031 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 31/191 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V+ D ET G + + ++ E +E E F PE V + Sbjct: 60 LEEDIVVLDTETTGLSFKTCGLIEISAAKI-SGREIVERFETF---VDPRKPIPPEIVAL 115 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + E + F + +N FD R F + Sbjct: 116 THITDEDVAGAPRA-KEAVSALADFV---GGLPVLAHNAVFD---------RTFIERVPG 162 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + N+ D L + R +S KL +A A G H A D Sbjct: 163 GHEVSNTWIDTLSLSRIA-------------LPRLSSHKLSRMAEAFG-ALRVTHRASDD 208 Query: 181 VYATLALVWLI 191 V A + + +I Sbjct: 209 VDALVGMWRII 219 >gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] Length = 247 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 31/204 (15%) Query: 2 TNHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 + V+ D ET G + R + V + + F D Sbjct: 9 QHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRDIQA 65 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 EAV + GIT + + E+ +F + +N FD + F Sbjct: 66 EAVQVHGITDEFLVDKP----EYQDVHAEFLEFIKGAELVAHNAPFDTGFMDYEFE--ML 119 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173 D D+ D L + + I+ L L GI+ H Sbjct: 120 DPSIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRT 165 Query: 174 AHDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189 >gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] Length = 228 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 61/217 (28%), Gaps = 29/217 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI D ET G D DR + V + + +F + EA + GIT Sbjct: 7 VILDTETTGLDMKNGDRVIEIGCVEM-VDFRITGE--IFHIYLNPEREISKEATRVHGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + QF I +N FD + + R Sbjct: 64 FEQLADSPK-FIDIADDFLQFIGSSE---IVAHNASFDIRFLNSELIRARQRRLIK---- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R I+ SP L L I H A D Sbjct: 116 LENVIDTLAMARKIFPGSPA--------------SLDALCRRFRISLEQREFHGALLDAQ 161 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + + + + +K+ + Sbjct: 162 LLARVYIELSKGSQVSMS-FLEGSSASSEKKMFKERE 197 >gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 242 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + + R + V V + D EA+ Sbjct: 11 IILDTETTGMNQSSGPIYLGHRIIEIGCVEV-VNRRLTGRHYHEY--INPQQPIDEEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + E ++ +F + I +N FD + + F + Sbjct: 68 VHGITNEFVADKPKFH-EVAQSFIEFI---DGAEIVAHNANFDVSFMDHEF--SMLQPLG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L + + ++ + L L GI++ + H A Sbjct: 122 PKTADICQILDSLAIAKHLHPGQKN--------------NLDALCKRYGIDNSARDLHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + L+ + K Sbjct: 168 LLDAEILADVYLLMTGGQTKF 188 >gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. F] Length = 1494 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 31/227 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF------CKPADDYLPDPEA 57 FVI+D ET G + ++ + A VRV + + F ++ Sbjct: 409 SFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNEKPLSKFT 468 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ E F + ++ +N I FD + + Sbjct: 469 TQLTGLKDSDLKDA-QDEKTVLEEFANFIQKDD-VLVAHNGIDFDFIWINTKLDKYKLKP 526 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH 175 +LD +R Y + L++L+L G E+ AH Sbjct: 527 LDNP---------MLDSLRLAYQLY-----------QFKRYTLENLSLKLGYEYDKTLAH 566 Query: 176 DAKADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 A D + ++ + K + L D ++ +L + +++ Sbjct: 567 RANYDTELLAKCLMIMLSQIYAKNWRSLLDLNDQEKLLNYLSEKSLK 613 >gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2] gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2] Length = 293 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 18/218 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G + DR Q + + ++ +IE KP EA+ + I Sbjct: 2 KIIILDTETTG-NKQEDRICQLSYLVLNEDL-EIEEIHNELVKPP--IPISYEAMAVHHI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ S + + + P I+ +N+ FD R + F+ Sbjct: 58 TNEMVEDKPQIKFTNSYKRLKELNSPENIIVIHNS-EFDLEMLRKEGFNPFFKLIDTFRV 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D ++ K +D+ I +NAHDA DV Sbjct: 117 LKHILPDGKFGLQYNRYALGLY------------KKEKDICKKYNI-TINAHDALGDVVV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 L I + +E L + K L Sbjct: 164 LYLLFEYILKNHNLTYEELIELTQKPILYDKFYQGKYK 201 >gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group] gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group] gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group] Length = 313 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 28/210 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G +R +FA VR D + + ++ GI Sbjct: 112 TILVFDIETTGFSRRYERIIEFA-VR-DLMG---GKNSTIQTLINPEREI--KNAYVHGI 164 Query: 64 TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + + EF + Q+ + + +N FD + F R+ + Sbjct: 165 SSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEM 224 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 D L + R + S + S L +L I +AH Sbjct: 225 -----PGDWLFVDTLPIARQL---------IGSDGEKLKSVSLDNLREHYKIPLAGSAHR 270 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206 A DV ++ + + L + Sbjct: 271 AMQDVITLCYVLQKLTFELKLTVPQLLERS 300 >gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 237 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 28/201 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M ++ D ET G D R + V V+R+ + F + EA+ Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRL----TGNNFHVYINPQRPSEEEAI 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + ++ + ++ +N + N Sbjct: 57 DVHGITNEFLRDKPLFH-QIAQEFFDYIE--GAELVIHNAPFDVGHMDNEFALLNQGYPK 113 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 ++ D L + R ++ + L L +++ H Sbjct: 114 TETF---CQVLDTLKMARDLHPGQKN--------------NLDALCRRYDVDNAKRTLHG 156 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + K Sbjct: 157 ALLDSEILADVYLAMTGGQTK 177 >gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans BC] gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans K601] gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans BC] gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans K601] Length = 242 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 50/194 (25%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G DR + V + + + +A+ + GI+ Sbjct: 5 IVLDTETTGLSAENGDRIIELGCV---ELLSRKLTGNNLHLYLNPERDSHEDALKVHGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE I ++ I +N FD + D Sbjct: 62 NEFLRDKPK-FAEVVHDILEYLRGAELII---HNASFDVGFLDKELELAGLPPLAAHVDG 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + + ++ L L +++ H A D Sbjct: 118 ---VIDTLAMAKEMFPG--------------KRNSLDALCDRLEVDNSGRTLHGALLDAE 160 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 161 LLADVYINMTRGQD 174 >gi|260901010|ref|ZP_05909405.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308110780|gb|EFO48320.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 248 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 58 FVSVDFETTGLNAEEDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 112 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + I + ++ + R F+ + + Sbjct: 113 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 159 Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178 ++ ++D + YA W S +L G+ H A Sbjct: 160 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 219 Query: 179 ADVYATLALVWLIREKK 195 D AT L + Sbjct: 220 TDALATAELFQAQLQYH 236 >gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 71/267 (26%), Gaps = 52/267 (19%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63 FV+ D ET G R + A V V + ++ + PEA + I Sbjct: 8 FVVVDTETTGLPPE-GRVVELALVEVGLER----EPQIVYSALVDPGCPIPPEASAVHHI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + ++ ++ I+ +N FD R W Sbjct: 63 TDRDVAGKPRLF-QVWPKVLEYI---GDAILVAHNAEFD---------RGMLPETGRPW- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADV 181 + R D A Q L GI E H A D Sbjct: 109 --------ICSKRLAQHLWRD----------APKHSNQVLRYWLGIDVEVGQPHRALGDA 150 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T + + + + + LI +P+ + FG + Sbjct: 151 IVTAHVF-------QRELRAYLEAGYPDDVDDLIAFAE-SPIEVQTMPFGKHKGMPLKDV 202 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDL 268 P+ Y D + + + Sbjct: 203 PL----DYLDWALRNLQDLSPDLRWSM 225 >gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069] gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069] Length = 233 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 28/212 (13%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + R + V V+R++ + + D D A+ + GI Sbjct: 4 IVLDTETTGLEPYDGHRIIEIGCVELVNRKF----TGNHYHQYLQPDREIDQGAMEVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F + +F + +N FD + + + DS + Sbjct: 60 TNEFLEDKPR----FVDVVDEFLEFIEGAELVIHNAPFDVGFLDHEL--SMLDSSKGKLS 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 + + D L + R ++ + L L H H A D Sbjct: 114 DYCTVLDTLVLARQMHPGQRN--------------SLDALCKRYEIDNSHRELHGALLDS 159 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 + + + L + N+ Sbjct: 160 EILADVYLRMTGGQTSLTLGRQNAANQQTTET 191 >gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 12/184 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D D + + ++ +P + DP++V + Sbjct: 13 YWALDLETGGLDARRDPIIAIGMLPIRHGTLRLGEAYYSLVRPPPGRIIDPDSVRAHQLV 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E R + + ++ ++ D + ++ + R Sbjct: 73 AGELREAPAI-GEVLREVDRRLREG---VLLVHHRALDVAFLKDAYRRCGMRWPA----- 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D++ I A + P L G+ AHDA +D A Sbjct: 124 -PRVVDTVDLL--IRAKRRSPFKDPHLPPVLPVLNLTRARREYGLPDYQAHDALSDAIAA 180 Query: 185 LALV 188 L Sbjct: 181 AELF 184 >gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 257 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 57/216 (26%), Gaps = 30/216 (13%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F + EA+ + Sbjct: 10 VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V AE + +F I +N FD + F + Sbjct: 67 HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L V R +Y L L GI++ H A Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L + L Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATATHENVADL 202 >gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] Length = 228 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 56/200 (28%), Gaps = 28/200 (14%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI D ET G D DR + V V + +F + EA + GIT Sbjct: 7 VILDTETTGLDMKNGDRVIEIGCVEV-VDFRITGE--IFHIYLNPEREISKEATRVHGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + +F I +N FD + + R Sbjct: 64 FEQLADSPK-FIDIADDFLKFIDSSE---IVAHNASFDIRFLNSELIRARQRRLIK---- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R I+ SP L L I H A D Sbjct: 116 LENVIDTLAMARKIFPGSPA--------------SLDALCRRFRISLEQRELHGALLDAQ 161 Query: 183 ATLALVWLIREKKPKLFEYL 202 + + + +L Sbjct: 162 LLARVYIELSKGSQVSMSFL 181 >gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] Length = 227 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 29/210 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G R + + + E V+ + PEA + G++ Sbjct: 4 IVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVY---LNPERDMPPEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + F + +N FD ++ Y Sbjct: 61 EEFLADKPL-FNDVAADFVAFI---GDSPLVIHNAAFDMHFLNWELKIAGYPVMP----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + SP L L G+++ N H A D Sbjct: 112 KDRAIDTLLMARQKFPGSPAT--------------LDALCKRFGVDNSNRTLHGALLDAQ 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 + + + + +K + Sbjct: 158 LLAEVYLELLGGRQTGLSFAGGPVSKGGVA 187 >gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] Length = 243 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 30/204 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHIYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + F + D + Sbjct: 66 HGIADEFLLDKP-TFADVADEFLDYIRGAE---LVIHNASFDIGFMDYEFSKLNRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L + R ++ L L I++ H A Sbjct: 122 SSF--CKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + + + Sbjct: 166 LDAQILADVYLAMTGGQTSMTFAM 189 >gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 248 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 32/201 (15%) Query: 6 VIYDYETFGRD-VALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G D R + V +DR E+ + DPEA+ I G+ Sbjct: 6 VVLDTETTGIDWKQGHRVIEIGAVELIDR--RVTEAYYQQY--LNPQRSSDPEALRIHGL 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE + +F I +N FD + + R Sbjct: 62 TDEFLQDQPG-FAEVADAFLEFLGDAELII---HNAPFDLGFLNHELQLAGKAPLR---- 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 + D L R + + L L +E H H A D Sbjct: 114 --QAVMDTLADARRRHPGQKN--------------DLNSLCRRYSVENSHRELHGALLDT 157 Query: 182 YATLALVWLIREKKPKLFEYL 202 + + + + L Sbjct: 158 RILAEVYLAMTGGQVDMMGML 178 >gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 224 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 53/187 (28%), Gaps = 29/187 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G DR Q A +D + S P P + GI Sbjct: 26 YAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSL---VDPHRDPGP--THVHGI 80 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ A+ + + + + +N RFD + Sbjct: 81 TAERLAGAP-TFAQLAPTVAGLL---DGRVFVAHNARFDWKFVSAEMRAAGVHLPVRQRL 136 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD+ + KL LA G+ + HDA+ D Sbjct: 137 CTWELAQRLDL-------------------PVENLKLATLAEHWGVRQLRPHDAEDDTRV 177 Query: 184 TLALVWL 190 + ++ Sbjct: 178 LVEVLRE 184 >gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC BAA-1498] Length = 235 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 37/222 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G + DR + + E I F D + E V I Sbjct: 4 IIFDTETTGLNKESDRIIEIGCI------EMINRYLTGRRFHVYLNPQDVIIPDEVVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + + + F I +N FD + R Sbjct: 58 GLTNERLKDEKK-FDDIVDALLDFIDD---ATIVAHNANFDIGFLNAELERVNKPLI--- 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 N ++ D L + R + P+ L L GI++ + H A Sbjct: 111 --NSDNVIDTLSIARRRFPMGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 D + + K +F +D + + D +N Sbjct: 155 DAEILADVYIELIGGKQGIF--SFDNYESCDVMNVQDNKNAF 194 >gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756] gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756] Length = 237 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 29/190 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D DR + + V + + +C P D EA + G++ Sbjct: 5 IILDTETTGFDPKTGDRLVEIGCIEV-VDFMPTGRSFHEYCDPLRDM--PAEAEKVHGLS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + R +F ++ +N FD + + R Sbjct: 62 SAFLTGKPKFH-EIADRFVEFV---GDSVVVAHNAAFDRQFVNFELEKCGRAPIR----- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + + + + L L I + H A D + Sbjct: 113 EDRWVDTLAMAKKRFPGMYN--------------SLDALCKRFKISLESRDKHGALIDAH 158 Query: 183 ATLALVWLIR 192 + ++ Sbjct: 159 LLAEVYLELQ 168 >gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 239 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + AGV + + D P+A+ + G+T Sbjct: 5 IVLDTETTGLNPASGDRIIEVAGVEL-FNRRLTGKHYHAY--LNPDRASHPDALKVHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + + +F I +N FD + R ++ Sbjct: 62 EEFLSDKPRFE-QIADDLLEFVRDAEVII---HNAPFDCAFLDAELERLNRPAF------ 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 R D + L L GI+ H H A D Sbjct: 112 -----------RQHVPLVTDTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAE 160 Query: 183 ATLALVWLIREKKPKLFEYL 202 + + + L L Sbjct: 161 LLAEVYLSLTRGQESLVIDL 180 >gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] Length = 244 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 32/200 (16%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + A R + V V + + + KP D L DPEA+ Sbjct: 10 IILDTETTGMNTAGGPIYLGHRIIEIGCVEV-INRKLTGNHYHVYIKP--DRLVDPEAIQ 66 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT ++ + F + +N FD + F + + Sbjct: 67 VHGITDVFLADKP-SFSQIANDFIDFIRGAE---LIAHNAPFDVSFMDYEFGKLGLNFKT 122 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 + S D L + R ++ L L GI+ H H A Sbjct: 123 R---DICSITDTLAIARDLFPG--------------KRNNLDVLCDRYGIDNSHRTLHGA 165 Query: 178 KADVYATLALVWLIREKKPK 197 D + L+ + K Sbjct: 166 LLDAEILADVYLLMTGGQTK 185 >gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Streptococcus pneumoniae GA17570] Length = 168 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 29/189 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLI 191 AT L+ Sbjct: 157 ATAELLLFY 165 >gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] Length = 1454 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 30/198 (15%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + + S + KP +P Sbjct: 2 YLIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLV-SHDDMLIKPDGFNIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I GI+ + A ++GV + + ++ T + N+ FD FYR Sbjct: 61 -DSEQIHGISTELADKNGVDLVDSLHKFNEALKQ--TKFVVGQNVAFDINIMGAEFYRKG 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170 D+ L V+ + + + P G FKL L Sbjct: 118 IDNPLQE----------LPVLDTCTETTAELCKIPGGRGGK--FKLPTLTELHQFLFNKA 165 Query: 171 HVNAHDAKADVYATLALV 188 AH+A ADV AT Sbjct: 166 FNEAHNATADVEATTRCF 183 >gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii DSM 16973] gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii DSM 16973] Length = 889 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 33/237 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPAD-----DYLPDPEAV 58 V++D ET G DV D Q A ++V R + +E S VF + +P+P Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKV-RNGKVVEGSSFNVFIRTEREIPAMLGDIPNP--- 559 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I + + + E + + + + +N+ +D + R+ Sbjct: 560 ----IIEEMKHHECLSPEEAFAQFMDYVAD---DAVLGHNVEYDFHILLYNLLRHA--PQ 610 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R+D L ++R ++ S+KL+ L G+E N+H A Sbjct: 611 WVERWKAVERFDSLKLIRLLH-------------PRQKSYKLKHLLERLGLEGTNSHLAD 657 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 D+ AT +L + + + ++ L S R Sbjct: 658 DDIMATKSLADYCYRHAVACVDEQQRFIDAHRPMVEKFRHVYADLFFHSFHRLYVRH 714 >gi|262402358|ref|ZP_06078919.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262351140|gb|EEZ00273.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 233 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 13/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + D V ++I + + + ++V I GIT Sbjct: 44 LVALDFETTGLNAQQDDILSIGLVPF--NTQRIALKQARYWLVKPSRPLEEDSVVIHGIT 101 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + F I+ + + + R + W Sbjct: 102 HTELKHAQEPEV----VFSELFDALRGKIVVAHFRHIEREFLRQTTLK------LWEEAV 151 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ ++ Q R S +L L G+ + H A D AT Sbjct: 152 EFPIIDTLEIELSVQNTQRSLWQRLLRSPI-PSVRLGQSRLRYGLPAYSPHQALTDAIAT 210 Query: 185 LALVWLIREKK 195 L Sbjct: 211 AELFQAQYAHH 221 >gi|86360676|ref|YP_472564.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86284778|gb|ABC93837.1| probable polymerase epsilon subunit protein [Rhizobium etli CFN 42] Length = 326 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 60/217 (27%), Gaps = 32/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + D + V + + ++ P+ +TGI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAVGDVVGIYGGLQQPSRPIPPDITRLTGI 134 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ +I +N FD + Sbjct: 135 TDVMVEGQTID----MPSLNALIE--PADLIIAHNAGFDRPFCEA--------------- 173 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A A++ + G KL L G H H A D +A Sbjct: 174 --------FSPIFAGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHGG-HRAVDDCHA 224 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ + F LY + ++R + Sbjct: 225 LLEILDRQQGDGESPFAELYRASQRCRVRIFAEHSPF 261 >gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10] gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus str. 91001] gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 32953] gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua] gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516] gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F] gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 31758] gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola] gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis YPIII] gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis PB1/+] gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92] gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10] gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus str. 91001] gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP 32953] gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516] gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua] gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92] gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F] gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP 31758] gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola] gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis YPIII] gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis PB1/+] gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004] gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 254 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TFADITPEFLDFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + ++N + Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGEVSQNNASE 200 >gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. maculicola str. ES4326] Length = 259 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 55/198 (27%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G V R + V E I F D D A+ + Sbjct: 11 VVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N F Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 121 -TRHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILAEVYLAMTGGQTS 183 >gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] Length = 816 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + + ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDRYTT---DVNPHEPLDAHIQELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178 >gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae NTUH-K2044] gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 246 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + F + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNASFDIGFMDYEFSKLNRGIGKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 125 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + ++ + + Sbjct: 169 LDAQILADVYLMMTGGQTSM 188 >gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 308 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 39/222 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVF 59 ++ D ET G D A + V ++ + + PE Sbjct: 47 LVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLE---EPKVAITPENSA 103 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GIT + G E + + + +N FD + Sbjct: 104 IHGITNEMV--KGQRFDEAA---LKALCSEAALFVAHNA-AFDKPFMLR----------- 146 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R+ L+ F P + + KL+ L G H AH A Sbjct: 147 --------RFPWLEKSIWACTFRE----LPWTQENYSGRKLEYLLSDCGYFHG-AHRAVE 193 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 D A + ++ + ++ + + ++ ++ Sbjct: 194 DCNALVHVLAQPMKTSQRMPFQVLFDSANESIYQIAALKAPF 235 >gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] Length = 259 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 14 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + +F + +N FD + F D + Sbjct: 71 HGISDEFLADKP-TFADITPEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGAL 170 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + +++N + Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNDSSE 205 >gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999] Length = 240 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 35/234 (14%) Query: 6 VIYDYETFGRDVAL-------DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D ET G R + V VDR+ + + DPEA Sbjct: 4 IVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKL----TGNHYHVYINPQQDIDPEA 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + + E ++ F + + +N FD + F N + Sbjct: 60 IAVHGITNEFLEDKPL-FKEIAQGFIDFI---DGAELVIHNAPFDVGFMDLEFALNPATA 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175 + + D L + + + + L L GI+ H + H Sbjct: 116 LTRTEKF-CTVLDTLVLAKKMRPGQRN--------------NLDALCREYGIDNSHRDLH 160 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVS 227 A D + L+ + L + + + KL + ++H + Sbjct: 161 GALLDAEILADVYLLMTGGQETLSLETGTKSSSGFDNVEKLAPRTSALKIIHAT 214 >gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp. multocida str. Pm70] gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70] Length = 253 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F + DP+A+ + Sbjct: 11 IVLDTETTGMNQFGAHYEGHCIIEIGAV---EMINRRLTGNNFHIYIKPNRPVDPDAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + E +++ + I +N FD + F + Sbjct: 68 HGITDEMLADKPM-FNEVAQQFIDYIQGAELLI---HNAPFDVGFMDYEFKKLNL----- 118 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 N ++ + D ++ L L GI++ H A Sbjct: 119 -NINTDAICMVTDTLQMARQMY-----------PGKRNSLDALCDRLGIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + + + LF+ Sbjct: 167 LDAEILADVYLTMTGGQTSLFDE 189 >gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] Length = 267 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 58/196 (29%), Gaps = 30/196 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + A +R++ VF L P +TGI Sbjct: 90 VVLDIETTGLSPTDHEIIELALIRLEN-----GRRTVFERLVNPGVLIPPFISRLTGIRS 144 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q A+ + + + + + + N FD + + F R + Sbjct: 145 QDVRDA----ADIYTVLEEAWPLLDNATLIIQNASFDLGFLQPRFKRLG-------YRLD 193 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184 N D + R G T L LA A + + A H A DV T Sbjct: 194 NPVVDTIHWARKA-------------LPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETT 240 Query: 185 LALVWLIREKKPKLFE 200 L + + Sbjct: 241 LQVAHEMYYMLTAGHP 256 >gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] Length = 235 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 35/202 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G + DR + + E I F + E V I Sbjct: 4 IIFDTETTGLNKESDRIIEIGCI------EMINRYLTGRRFHVYLNPQGVVIPDEVVAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + + + F + I +N FD + R Sbjct: 58 GLTNERLKDEKK-FDDIVDALLDFI---DGATIVAHNANFDIGFLNAELERVNKPLVSI- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 N D L + R + P+ L L GI++ + H A Sbjct: 113 ----NHVIDTLAIARRRFPTGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEY 201 D + + K +F + Sbjct: 155 DAEILADVYIELIGGKQGIFGF 176 >gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 246 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 5 FVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 V+ D ET G + R + V + + F D EA+ Sbjct: 12 IVVLDTETTGMNLEGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRAIQDEAI 68 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + E+ +F + +N FD + F + + Sbjct: 69 EVHGITDEFLVDKP----EYKDVHEEFLDFIRGAELVAHNAPFDVGFMDYEFSKLSIPTA 124 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHD 176 + D L + A + L L GI+ H H Sbjct: 125 KT---------DELCKVTDTLAMAKKIF-------PGKRNNLDVLCDRYGIDNSHRTLHG 168 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + L+ + Sbjct: 169 ALLDAEILADVYLLMTGGQTS 189 >gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium] gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 66 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + + + + Q Sbjct: 166 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 197 >gi|326772455|ref|ZP_08231739.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505] gi|326637087|gb|EGE37989.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505] Length = 280 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 25/172 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D + A V D S D I G+ Sbjct: 42 YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTL---IDPGAGVDVGPTHIHGLV 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + E + + + ++ +N + ++ + R D Sbjct: 99 AEELIGAPG-FDEVADLLVADLA--GRAVVAHNARFDVGFLTQELGTRGLLD-------- 147 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R ++W S +L G+E H+ Sbjct: 148 -----------RGARVPRVCTMEWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188 >gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568] gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568] Length = 246 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 31/220 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + + V + KP D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGALEV-INRRPTGRHYHVYIKP--DRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F ++ +N F D Sbjct: 66 HGISDEFLADKP-TFAQIADEFIDFIR--GGELVIHNAAFDIG----------FMDHEFR 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 G + D + + L L I++ H A Sbjct: 113 MLQQGIPKTDTFCTITDSLLMARRLF-------PGKRNNLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL-FEYLYDYRNKNQLRKLIDI 217 D + + + + F+ D +N N + + I Sbjct: 166 LDAEILAEVYLAMTGGQTSMAFQMEGDTQNSNSTQDIQRI 205 >gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] Length = 252 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G DR + V + S +A+ + GI+ Sbjct: 4 IVLDTETTGLSAEGGDRIIELGCV---ELLNRKLSGNNLHFYFNPGRDSHEDALRVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++ I + I +N FD + + Sbjct: 61 NEFLRDKPK-FAEVAQEILAYLQGAELII---HNAAFDVGFLNKELELIGKPALHTFVGG 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + + +Y L L G+++ H A D Sbjct: 117 IT---DTLAMAKELYPG--------------KRNSLDALCDRLGVDNSGRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 160 LLADVYINMTRGQD 173 >gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] Length = 816 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 58/420 (13%), Positives = 126/420 (30%), Gaps = 58/420 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + + ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDRYTT---DVNPHEPLDAHIKKLTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T ++ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDRRLAQAP-DFSQVARKIFDLVENG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELTQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + ++ + + Sbjct: 157 ATAELLLFLREKMAQLPKELL-----ERLLEMADALLYESYLVIEEIYRSQ-------SI 204 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL---NK 299 + + + + L +K + + E++ KEV L N+ Sbjct: 205 LISSDLVEVQGLYFKKIVAPLESRKLS-QDFSKNISLLNLEVREEQESFAKEVDLLLKNE 263 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 L+ + + + E +L T + + + Sbjct: 264 PVSLIQAPTGIGKTYGYLLPALSQVTERQIVLSVPTKILQNQIMEEEGKHLKE--VFHTD 321 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ ++ + L F L E+ YR ++F Sbjct: 322 IHSLKGPHNYLKLDAFYRSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 242 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 31/205 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + R + V V F D EA+ Sbjct: 11 IILDTETTGMNQGAGAVYLGHRIIEIGCVEV-VNRRLTGR--TFHQYINPGQAIDEEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + + E F + +N FD + + F + Sbjct: 68 VHGITNDRVAGEPRFH-EIVGGFLDFIRGAE---LVAHNASFDMSFINHEF--SMLVPQG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 ++ + D L + + ++ + L L GI++ H A Sbjct: 122 PKVEDICTVLDSLAIAKFLHPGQKN--------------NLDALCKRYGIDNTRRTYHGA 167 Query: 178 KADVYATLALVWLIREKKPKLFEYL 202 D + ++ + K + Sbjct: 168 LLDAEILADVYLVMTGGQTKFNLHA 192 >gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 325 Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 76/280 (27%), Gaps = 34/280 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + + P P V+I G+T Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTMVNPERDPGP--VWIHGLT 75 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + + ++ +N FD + R S Sbjct: 76 SDVLEGAPLFE-DIAAEFASRLADR---VLVAHNAVFDWSMIAREYAR------AKSQAP 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + KL+ LA G+ AH A D Sbjct: 126 VRQRLCTIALSK-------------ELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 172 Query: 185 LALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 + P SG + + + PV Sbjct: 173 AEAFRPSLHAAARDGVRLPLLECLPLTEWNATPRIGRQP----SGGYPSGSWRPSRKRPV 228 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 +P G L MRV D+ + L E Sbjct: 229 CPYPNPGRYEEGKPLKQGMRVAFSGDTSVDRELLEDRAVE 268 >gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 243 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 30/218 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 66 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 D + + + + + + Q + I Sbjct: 166 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEETIQ 203 >gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois] gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois] Length = 1438 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 59/476 (12%), Positives = 128/476 (26%), Gaps = 48/476 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I+D ET G + D + V I+ E + +T IT Sbjct: 394 FSIFDLETTGLNPIFDEIIEI-FVLKYSSGTVIDHYYSLIRCNKKLRK---EIINLTHIT 449 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K G + + + F S T +I +N I FD + + ++ + Sbjct: 450 EEKLNMSGRDKLTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLDNP--- 504 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--LANGIEHVNAHDAKADVY 182 +LD +R A + S+ L +A ++ + H+++ D Sbjct: 505 ------ILDTLRLCKAL--------EEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTR 550 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS------- 235 + ++ L Y Y L D + + + +++ Sbjct: 551 CLAKMWEFWSQQLIDLSLDPYTYDGLVNLNSSFDKDKLLRNYFGNNVIIFAKNQKGLKSL 610 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295 + H K + + L S + + ++ ++ Sbjct: 611 YELVSIAHTEHFVDKPRLKWDAIETRRENLIVLSSPTNSALVNAVLNDEFDTFKKEGEKF 670 Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTL-----LRQQTNLRDRFKAIYNKPYT 350 P + F G + N +++ Sbjct: 671 DYISLPPPSNFSHEISRGFFEDGEVETLLKTFYEWADNCQFKLIANYCLKYQDFKEVEQY 730 Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPE--QLSTLNLPF---SDRRLPELFFRYRA 405 S + + D + + + F S++ +LFF YR Sbjct: 731 KVLVHAKSIGGKRHYLYSSKHGNDVLPDYSWRTTERLISEYDFLSLSEKEKEDLFFTYRY 790 Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461 +++S + K L +I ++ + + L + Sbjct: 791 ELA-NSVSPDIFVN-----KSELAIPKIPGALENIKEYIHRKLTAKYGKKLDKQIQ 840 >gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] Length = 407 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 83/258 (32%), Gaps = 31/258 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D E+ G + + A + D E ++ + P +T I+ Sbjct: 2 YSVIDIESNGAGFRKESIIEIAVYKYDGH-EIVDQFISL---VNPESEITPFVQKLTKIS 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ E +RR+ + NT ++G+N FD R F R YD + Sbjct: 58 PKMVKTAPK-FPEIARRVIEITR--NTILVGHNI-DFDYRMLRQEFKRLGYDFTINT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + A S+ L L + GI V+ H A D AT Sbjct: 111 ----LDTIPLAK-------------KLIPEAESYSLGKLVKSLGIPLVDQHRASGDARAT 153 Query: 185 LALVWLIREKKPKLF---EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 L L L+ K ++ + K L K+ ++ P + Sbjct: 154 LDLFKLLLIKDKNSEIIQQHHEESNGKTYLNKVRNLTQDLPAARGIIYMQNAEGKIIYFD 213 Query: 242 PVAWHPRYKDSVIGCNLS 259 V ++ V L Sbjct: 214 FVDDLSKFAKHVFSSKLK 231 >gi|241763877|ref|ZP_04761921.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241366845|gb|EER61267.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 219 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 14/190 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G +V D VR+ +P ++V I + Sbjct: 43 VALDCETTGLNVRSDEIIAIGAVRIAGNRILTSERLELLVRPDKGV--SADSVRIHRLRS 100 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + G+ E R+ +F + ++GY + + R + Sbjct: 101 RDVA-QGLPLQEAMDRLLRFI--GSRPLVGYY-----LEFDVAMLNRALWPLLGMGLPQP 152 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L + + + + L G+ AHDA D Sbjct: 153 KIEVSAL----YYEYKFRQLPPYQQQGNADIDLRFATLMDDLGLPQREAHDALNDAVMAA 208 Query: 186 ALVWLIREKK 195 +R+ Sbjct: 209 LAFVKLRQLH 218 >gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 231 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 29/207 (14%) Query: 1 MTNHFVIYDYETFGR-DVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ + D ET G R + AGV V+R+ + F D D A Sbjct: 1 MSMRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRL----TNNHFHVYLNPDREIDEAAQ 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + A+ QF S + I +N FD + R + Sbjct: 57 EVHGITLEFLQDKPR-FADIVDEFLQFVSGADLII---HNAPFDIGFLNAELNRVGRQNI 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 S D L + + + + L L GI++ + H Sbjct: 113 EHSVL---EIIDTLKMAKEMRPGQRN--------------NLDALCRHYGIDNSSRTLHG 155 Query: 177 AKADVYATLALVWLIREKKPKLFEYLY 203 A D + + + L + Sbjct: 156 ALLDAELLADVYMAMTRGQESLMIDML 182 >gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 192 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 24/196 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D + + +D + + + PEA I G+T Sbjct: 18 VVLDTETTGLD-DQAEVIEIS--VMDMRGNVL--FDQLVRPLNP---VPPEAAEIHGVTN 69 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +K F + + N FD + +W Sbjct: 70 EKLANKPN----FPDVYISLWRAIGGRTVVAYNADFDRRLLKQTCAAYRLPMIEANWQ-- 123 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 A+ A++ + ++ G L A GIE AH A AD + T+ Sbjct: 124 ----------CAMNAYARYRKEPDAKRGGYRRQSLAKAAAQMGIEVYGAHRAVADCFTTV 173 Query: 186 ALVWLIREKKPKLFEY 201 ++ + Sbjct: 174 EVIRAVAALSEPAHHN 189 >gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] Length = 245 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + F + D + Sbjct: 69 HGIADEFLLDKP-TFADVADEFLDYIRGAE---LVIHNASFDIGFMDYEFAKLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 NEF--CKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + ++ + + Sbjct: 169 LDAQILADVYLMMTGGQTTM 188 >gi|87124219|ref|ZP_01080068.1| Exonuclease [Synechococcus sp. RS9917] gi|86167791|gb|EAQ69049.1| Exonuclease [Synechococcus sp. RS9917] Length = 261 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 29/189 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +I D ET G D D+ + + D ++ + F + A I Sbjct: 30 PRTLLILDTETSGLDPEQDQCLEVGAILFDVPEREVLVQQSFLLPVEHNP-----AQAIN 84 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I A R E R + + ++ ++ FD + Sbjct: 85 HI-AASATRCPQPWREGLRYLQALMDTAD--LLVAHHAAFDRQWFGRG------------ 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L RA + + D I+WP+ ++DLALA+GI H A AD Sbjct: 130 ---------HLPAARAAWLCTMDDIRWPAELQLRPRPSVRDLALAHGIPVWAVHRALADC 180 Query: 182 YATLALVWL 190 + Sbjct: 181 VYIAEVFKR 189 >gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64] gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64] Length = 1461 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 61/478 (12%), Positives = 131/478 (27%), Gaps = 51/478 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G ++ + + + T+ F P +TGIT Sbjct: 426 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEP---IKPFTENLTGIT 482 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G+ E ++I+ + + +N NF Sbjct: 483 NAMIEKSGLELKEALQKIYNDLN--GKIALAHNARFD----------FNFLKEKFRQAKI 530 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 ++D + KL+D+A G+E+ AH D Sbjct: 531 EFPNVTVIDTLIVSRIVF----------PQNKKHKLEDVATRVGVEYDPTVAHRGDYDAK 580 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + ++ K ++ N K+ L ++ + L Sbjct: 581 VLAEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGY--L 638 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL---FTSHDELKGLVPVPIKEVH 296 + + +L+ L S L RL + + + + + + Sbjct: 639 TTALTKNLYNGPKTFMEDLAAH-SENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYDYI 697 Query: 297 LNKCPILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-- 353 P + + E+ I K ++ ++ K + + Sbjct: 698 EVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVAYEVL 757 Query: 354 ------QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407 ++ L++ A + E++ D++L E N Sbjct: 758 VYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIE----DIVIN 813 Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + K L + E+ KL L E + E L + E ++ Sbjct: 814 NTNKI-ADMCDKIQ-VIKDKLYTPKFEDSGKKLHDLVYETAYKKYGEKLPKIVEERIE 869 >gi|153834777|ref|ZP_01987444.1| gp41 [Vibrio harveyi HY01] gi|148868812|gb|EDL67880.1| gp41 [Vibrio harveyi HY01] Length = 218 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 16/214 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + +I D ET G +F + D + +A I Sbjct: 17 TENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNEL------VKPTCSIPADATAIH 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + FS + II YN+ FD ++ +Y S Sbjct: 70 GITNEDVKDAPDFHLVFSNHFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 126 Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178 + ++ + M F W + L + ++ + AH A Sbjct: 127 VHDLFFKFCIPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRAL 183 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 AD T L+ + + D K L Sbjct: 184 ADCEMTRRLIHAVNSQIENQNNQNCDSVTKPSLE 217 >gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301] gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942] gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301] gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942] Length = 256 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 45/181 (24%), Gaps = 24/181 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G R + ++ TGI Sbjct: 21 TFTVVDVETTGFKPPQARVIELGILQATLAEGIQFQQAEL---LNPGIPIPEAIAQFTGI 77 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + T I+ +N+ FD + + + D Sbjct: 78 TTDLIATADPPE----SVLPPLLPRLQTGILVAHNLPFDYRFLTAEYQQLGLDF------ 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 S + L ++ D S L L G +H A ADV A Sbjct: 128 -ERSPTEQLCTVQMSRQLLADL----------PSRSLPQLVQHFGFPVGQSHRAAADVEA 176 Query: 184 T 184 Sbjct: 177 C 177 >gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] Length = 893 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D Q + R + + + D P +T I Sbjct: 5 SYAVVDLETTGNQLDYDEIIQIG-ITFVRDQKIVGTYHS---MINTDVEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + +++ + +N+ FD + + F RN Sbjct: 61 EEDMLKQAPYFH-EVAEDVYKQLKDS---VFVAHNVSFDLTFIKKAFKRNHI------HF 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + S++L +LA A+ I NAH A D Sbjct: 111 QPKKVIDTVEL-------------FKIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ +K L Sbjct: 158 TAKLMIKAFQKFETLPLDTLK 178 >gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] Length = 269 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 53/201 (26%), Gaps = 26/201 (12%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++I+D ET G D A V + E E ++F +TGI Sbjct: 78 YIIFDTETTGFYPYQGDEIINIAAVVI-ENGEIKED-QIFDELVNPHRSIPQAVCDLTGI 135 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F ++ +N FD F + + Sbjct: 136 TDDMVADK----CGICSVLSDFLDFIGDSVLVAHNAEFDL---------AFLNIKLNWYT 182 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D + A P S L L + ++ H A D Sbjct: 183 QTEIYNPVIDTYKLGRALYPQL----------LSHDLDTLIRHHRVKERPRHTALGDSLM 232 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T + +K K Sbjct: 233 TAEIFLDYLKKLEKEEITTLK 253 >gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 246 Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + + + + Q Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200 >gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] Length = 230 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + ++ + + F C + EA + G++ Sbjct: 4 IVLDTETTGLDPVRGDRLVELGCVEI---FNRMPTGQTFHCYINPERDMPQEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F++ + +F + +N FD + R Sbjct: 61 SEFLADKPL----FAQVVDEFLEFIGDAPLIIHNASFDISFINAELERLKRQVIGRERL- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + S +L DL I++ H A D Sbjct: 116 ----VDTLLIARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 617 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 28/182 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A + + P P V + G+T ++ Sbjct: 22 VDVETSGLVARRDRVLSIAVLTFAPDGTQTGEYTTL---LDPGCDPGP--VHVHGLTAER 76 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 E + + RI + ++ +N +FD + + F R Sbjct: 77 LRGAPAFE-QVADRIGALL---DGRVMVAHNAQFDYDFLAHEFARARLH----------- 121 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 L V R + + + P L LA G+ AHDA D + Sbjct: 122 ----LPVARRLCTLALNRRVEPPVAG----LSLASLAAYYGVPQTRAHDALDDTRVLAGI 173 Query: 188 VW 189 Sbjct: 174 FR 175 >gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 246 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + + + + Q Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200 >gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10] gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10] gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] Length = 247 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ +F + +N FD + F Sbjct: 67 AIEVHGITDEFLKDKP----EYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFA----- 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 G + D + + +P L L GI+ H Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21193] Length = 784 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q V + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQEIYGKIKD---CIFVAHNVDFDLNFIKKAFKD------YNI 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] Length = 828 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN + I D E + Q + + + + I+ D + +T Sbjct: 6 TNKYAIVDLEATSAS-STASIIQVG-IVIMQNGQVIDEFAS---DVNPHQELDDHIIHLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + +E +R I + CI +N++FD + ++ Sbjct: 61 GITDQQLAQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y +KL L+ ++ AH A D Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YKLSHLSKVLNLDLAQAHTAIEDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L++ + +K L + Sbjct: 157 RATGQLLFHLMDKITSLPRQTIEM 180 >gi|260772908|ref|ZP_05881824.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260612047|gb|EEX37250.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 238 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D D V Q ++ + + +P D +V I GIT Sbjct: 48 FVAMDFETTGLDENKDEIITIGLVPFTLQRVYLKRAQHWIVRPR--QKLDEGSVIIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + S + I+ + + + + F R + Sbjct: 106 HSDIMHAP----DLSEVFEALLTALEGKIVVAHYHKIEREFLDQAFKRRINEGIE----- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + I GI R S +L G+ N H A D AT Sbjct: 157 -FPIIDTMQLEAEIQKRLTAGIWNKLRGKKPQSLRLGQARQRYGLPAYNPHHALTDAIAT 215 Query: 185 LALVWLIREKKPK 197 L+ Sbjct: 216 AELMQAQIAHHYS 228 >gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 28/199 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT ++ D ET G DR + V + + + +A+ Sbjct: 1 MTRQ-IVLDTETTGLSAEGGDRIIELGCV---ELLNRKLTGNNLHLYFNPERDSHEDALK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ + AE I ++ I +N FD + ++ Sbjct: 57 VHGISNEFLKDKPK-FAEVVDEILEYLQGAEIII---HNAAFDVGFLNKELELTGRPAFT 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 S D L + + +Y L L G+++ H A Sbjct: 113 ---SYVESVTDTLVMAKEMYPG--------------KRNSLDALCDRLGVDNSGRTLHGA 155 Query: 178 KADVYATLALVWLIREKKP 196 D + + + Sbjct: 156 LLDAELLADVYINLTRGQD 174 >gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 246 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 30/218 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 D + + + + + + Q + I Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEETIQ 206 >gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1] gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1] Length = 243 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 28/199 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT ++ D ET G DR + V + + + +A+ Sbjct: 1 MTRQ-IVLDTETTGLSAEGGDRIIELGCV---ELLNRKLTGNNLHLYFNPERDSHEDALK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ + AE I ++ I +N FD + ++ Sbjct: 57 VHGISNEFLKDKPK-FAEVVDEILEYLQGAEIII---HNAAFDVGFLNKELELTGRPAFT 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 S D L + + +Y L L G+++ H A Sbjct: 113 ---SYVESVTDTLVMAKEMYPG--------------KRNSLDALCDRLGVDNSGRTLHGA 155 Query: 178 KADVYATLALVWLIREKKP 196 D + + + Sbjct: 156 LLDAELLADVYINLTRGQD 174 >gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] Length = 250 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 23/188 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V++D ET G D D + VRV+ + + T ITG+ Sbjct: 57 TYVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRRITGL 116 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+ R + +F + + ++ ++ D + N + + + Sbjct: 117 SEQELWRAPK----VQDVLSRFMAFSSDAVLVAHHAGHDVNFL------NVPLNQFYGIE 166 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D V R + WP + + L I + H A D Sbjct: 167 LPRRVVDTAQVARRL---------WPDTGEATLDY----LIERMAIPPLTRHRALNDALL 213 Query: 184 TLALVWLI 191 T + + Sbjct: 214 TARIWSVF 221 >gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180] gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM 180] Length = 240 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 27/198 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + R + V VDR F + D EA + GI Sbjct: 4 IVLDTETTGLEPREGHRIIEIGCVELVDR--RPTGR--NFHEYLNPERQIDAEAEAVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + AE + R+ ++ I +N FD + + + + + Sbjct: 60 SNAFLADKPR-FAERAERLVEYLRGAELII---HNAAFDVGFLDHE-FGLWRGAEAPRIA 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181 + + D L + R ++ +G L L H H A D Sbjct: 115 DLCTVTDSLLMARKLHPGQRNG--------------LDALCKRYAIDNSHRTLHGALLDA 160 Query: 182 YATLALVWLIREKKPKLF 199 + + + L+ Sbjct: 161 EILADVYLAMTGGQVSLY 178 >gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 1467 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 61/478 (12%), Positives = 131/478 (27%), Gaps = 51/478 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +D ET G ++ + + + T+ F P +TGIT Sbjct: 432 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEP---IKPFTENLTGIT 488 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G+ E ++I+ + + +N NF Sbjct: 489 NAMIEKSGLELKEALQKIYNDLN--GKIALAHNARFD----------FNFLKEKFRQAKI 536 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 ++D + KL+D+A G+E+ AH D Sbjct: 537 EFPNVTVIDTLIVSRIVF----------PQNKKHKLEDVATRVGVEYDPTVAHRGDYDAK 586 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 + + ++ K ++ N K+ L ++ + L Sbjct: 587 VLAEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGY--L 644 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL---FTSHDELKGLVPVPIKEVH 296 + + +L+ L S L RL + + + + + + Sbjct: 645 TTALTKNLYNGPKTFMEDLAAH-SENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYDYI 703 Query: 297 LNKCPILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-- 353 P + + E+ I K ++ ++ K + + Sbjct: 704 EVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVAYEVL 763 Query: 354 ------QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407 ++ L++ A + E++ D++L E N Sbjct: 764 VYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIE----DIVIN 819 Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465 + + K L + E+ KL L E + E L + E ++ Sbjct: 820 NTNKI-ADMCDKIQ-VIKDKLYTPKFEDSGKKLHDLVYETAYKKYGEKLPKIVEERIE 875 >gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619] gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619] Length = 254 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58 VI D ET G V+ R + V E I F D D A+ Sbjct: 7 KRLVILDTETTGMPVSEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + +F + +N FD + N F Sbjct: 61 NVHGITDAFLVGKPR-FGDVAEEFFEFIQ---GATLVIHNAAFDVGFINNEFALLGQRDR 116 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176 + + D L + RA + + L L I++ H Sbjct: 117 ADISQH-CTILDTLLLARARHPGQRN--------------SLDALCKRYDIDNSGRELHG 161 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182 >gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25] gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25] Length = 248 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 55/195 (28%), Gaps = 25/195 (12%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + F D D A+ + GIT Sbjct: 6 VVLDTETTGMPVTDGHRIIEIGCVEL-MGRRLTGRH--FHVYLQPDRDSDEGAIGVHGIT 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + +F + I +N FD + N F + Sbjct: 63 DEFLKGKPR-FAEVADEFFEFINGAQLII---HNAAFDVGFINNEFALMGQTDRADISKH 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 S D L + R + + L L G+++ H A D Sbjct: 119 -CSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALLDSE 163 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 164 ILADVYLTMTGGQTS 178 >gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 308 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 8/112 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D D+ + + + + D +P A + GI+ Sbjct: 6 LLVFDVETTGTDRRRDQIIELCVQ-----FGLGDDAPNRVWRIRPDVAIEPAAQEVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 E + + + F+ T ++GYN FD + + R Sbjct: 61 MDDLAECPR-FPEVADELRELFASA-TVLVGYNV-SFDIGMLQAEYERLGQF 109 >gi|729197|sp|P41060|CP81_BP186 RecName: Full=Uncharacterized exonuclease CP81 gi|3337284|gb|AAC34183.1| Orf81 [Enterobacteria phage 186] Length = 194 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 48/183 (26%), Gaps = 20/183 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G + + D + EA I GIT Sbjct: 21 IFIDTETTGLG-DDAEIVEICLI--DSAG-----FIMLNTLVKPTKPIPAEATAIHGITD 72 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + F + YN + + + N Sbjct: 73 EMVMYAP-TWKDIHGAVASLFFEYG--FVIYNADYDTRLIYQTAKLYGLENDGFCYFLNE 129 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184 S ++ + P R G KL D A G+ AH A AD T Sbjct: 130 RSACAMM--------LYAEYRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMT 181 Query: 185 LAL 187 L + Sbjct: 182 LGI 184 >gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] Length = 333 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + + + P P V+I G+T Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTL---VNPERDPGP--VWIHGLT 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + ++ + + ++ +N FD + R Sbjct: 73 SEALEGAPL-FPEVAAQLSERL---DGRVLVAHNAAFDWSMLAREYARA----------- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + KL+ LA G+ AH A D Sbjct: 118 --------AITAPVRQRLCTIALSKELRLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 169 Query: 185 LALVW 189 Sbjct: 170 AEAFR 174 >gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] Length = 927 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNMKVVKTYSFL---INPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + + ++ +I + +N+ FD + ++ YD+ Sbjct: 63 TGISNEDVQKQKDFDY-YAPKIVSILQD---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLGDLTSQLKIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I +K L + + + Sbjct: 160 AYGTAVLLIEIIKKLTNLPQATLNTLS 186 >gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 218 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 46/174 (26%), Gaps = 30/174 (17%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D+ET G A R + A V + ++ + P +TGI Sbjct: 6 IAVIDFETTGMMPAQGARATEVAIVLM-EGGRVVDRYQSLM---RTGVRIPPFITQLTGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + + +N FD + + Sbjct: 62 TNAMVEAAP----DAAAVMREAARFVGDAPMVAHNAAFDRKFWQAELQHAG--------- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 + A + F+ + A S L L G+ AH Sbjct: 109 -----------LAAPHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLPRAGRAHR 151 >gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48] gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudomonas entomophila L48] Length = 251 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 25/198 (12%) Query: 3 NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 VI D ET G V R + V V F D D A+ + Sbjct: 7 QRLVILDTETTGMPVGDGHRIIEIGCVEV-MGRRLTGRH--FHVYLQPDRESDEGAIGVH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + ++ +F + +N FD + N F Sbjct: 64 GITDAFLVGKPR-FGDVAQEFFEFIE---GATLVIHNAAFDVGFINNEFALLGQHDRADI 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 + S D L + R+ + + L L GI++ H A Sbjct: 120 SQH-CSILDTLMMARSRHPGQRN--------------SLDALCKRYGIDNSGRELHGALL 164 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 165 DSELLADVYLAMTGGQTS 182 >gi|298252322|ref|ZP_06976124.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer DSM 44963] gi|297545742|gb|EFH79611.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer DSM 44963] Length = 471 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 21/192 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D + D+ Q +++ + + S A I GIT + Sbjct: 27 FDSETTGLD-SEDQIIQ--WAVCNQEGQLLGS-----GYIKPTVPISEGAFEIHGITEAQ 78 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + AE I + ++ YN+ + Sbjct: 79 LANAPL-FAESWPTIRDLLTASGKTVVIYNSNFDIGMLWSSARAH-----------GIPM 126 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKADVYATLA 186 RWD + A+ F+ ++ T KL ++ N AH+A+ D AT Sbjct: 127 RWDEIKAECAMQLFASFYGEYHEYWGSYTWQKLTTAISHLNITVPGEAHNAEHDAAATAH 186 Query: 187 LVWLIREKKPKL 198 ++ + E K Sbjct: 187 IIRQLAELADKE 198 >gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] Length = 964 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 31/186 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G V + + + R+ E ++ + F L E +T IT Sbjct: 39 IVLDTETTGLSVQDNELIEISAARL-SGREVVDRFDTF---VHPKQLIPAEITELTSITN 94 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E + F C + +N FD + ++ Sbjct: 95 ADVADAP-SAVEAVAALADFV---GGCPVIAHNATFDRSFIESVKGGVNVSDIW------ 144 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + R S KL +A G + +H A ADV A Sbjct: 145 ---IDSLALSRIA-------------LPRLASHKLSFMADLFGCD-SVSHRANADVDALC 187 Query: 186 ALVWLI 191 + ++ Sbjct: 188 GVWRVL 193 >gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] Length = 244 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 31/204 (15%) Query: 2 TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 + ++ D ET G + R + V + + F D Sbjct: 9 QHRIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRDIQA 65 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 EAV + GIT + E+ +F + N + +N FD + F + Sbjct: 66 EAVGVHGITDEFLRDKP----EYKDVHAEFLAFINGAELVAHNASFDVGFMDYEF--SML 119 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173 D+ D L + + I+ L L GI+ H Sbjct: 120 DASIGKTAQYCKVTDTLAMAKKIFPG--------------KRNNLDVLCDRYGIDNSHRT 165 Query: 174 AHDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189 >gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium HTCC5015] gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium HTCC5015] Length = 238 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 14/189 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G + D+ V D + S + + P + +V + GIT Sbjct: 51 LAIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPGE---LSDSSVIVHGITH 107 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 R ++A I + + + + + R + + WS Sbjct: 108 SDVSRAPTIDA----VIPELLRAMAGRLSVVHYRAMEREFFRMLGFS------LWSQPWL 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D + G R+ S +L D L + HDA D AT Sbjct: 158 FPVIDTFA-LETTCLKQSQGWFDRFRNKSLPSLRLPDARLRYHLPEYENHDALVDAIATA 216 Query: 186 ALVWLIREK 194 L+ +K Sbjct: 217 ELLQAQIQK 225 >gi|156974590|ref|YP_001445497.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116] gi|156526184|gb|ABU71270.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 16/204 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + +I D ET G +F + D + EA I Sbjct: 16 TENAIIIDTETTGLGSDT-EIIEFTAICADSGKVIVNEL------VKPTCSIPAEATAIH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + FS + II YN+ FD ++ +Y S Sbjct: 69 GITDEDVKDAPDFHLVFSNYFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 125 Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178 + ++ + M F + L + ++ + AH A Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFGVLN---EHHEDYKWQSLTNACAQQQVDVSDLTAHRAL 182 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 AD T L+ + + Sbjct: 183 ADCEMTRRLIHAVNSQIENQNNQS 206 >gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3] Length = 235 Score = 80.6 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 37/222 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61 +I+D ET G + DR + + E I F + E + I Sbjct: 4 IIFDTETTGLNKESDRIIEIGCI------EMINRYLTGRRFHVYLNPQGVVIPDEVIAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + + + + F + I +N FD + R Sbjct: 58 GLTNEHLKDE-KNFEDIVDALLDFI---DNATIVAHNANFDIGFLNAELGRVNKPLVSSD 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + P+ L L GI++ + H A Sbjct: 114 N-----VIDTLSIARRRFPMGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 D + + K +F +D + + D +N+ Sbjct: 155 DAEILADVYIELIGGKQGIF--SFDNYENFDVMNVQDSKNVF 194 >gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium siraeum V10Sc8a] Length = 268 Score = 80.6 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 30/194 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ + + D ET G + D + V V E+ V D + +T Sbjct: 102 SDTYTVIDIETTGLNPD-DEIIELGAVTV-ENGSVAETYSVL---VKTDKKIPEAIIRLT 156 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + +G + S+ + +F N + +NI FD + ++ N D Sbjct: 157 GITEELLASEGT---DKSKALSEFAMRCNGKPLVGHNIGFDLNFIKSACAENKIDFV--- 210 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKA 179 + D + + R + S+ L +A H A Sbjct: 211 ---PSKIIDTVKISR--------------KLLDINSYSLAAIADYFDLHYNKDRIHRALD 253 Query: 180 DVYATLALVWLIRE 193 D T + ++E Sbjct: 254 DCLLTQRIYEKLKE 267 >gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] Length = 927 Score = 80.6 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNMKVVKTYSFL---INPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + + ++ +I + +N+ FD + ++ YD+ Sbjct: 63 TGISNEDVQKQKDFDY-YAPKIVSILQD---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLGDLTSQLKIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I +K L + + + Sbjct: 160 AYGTAVLLIEIIKKLTNLPQATLNTLS 186 >gi|149927335|ref|ZP_01915591.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149824049|gb|EDM83272.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 248 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 27/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP----ADDYLPDPEAVFIT 61 + D+ET G + D V + + + + KP D +P I Sbjct: 56 LAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIP------IH 109 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + + + + + F D+ Sbjct: 110 GITHSDIANAP----DLIDVLPELLKMMSGKLAVAH---------CAAIETRFLDTALQY 156 Query: 122 WDNGNSRWDLLDVMRAIYAFSPD----GIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + ++D M FS + R S +L D+ + H+A Sbjct: 157 RVGEGIVFPVIDTMGIERHFSDHQNSGLFERMFRKSQGASLRLPDIRKRYKLPFYRPHNA 216 Query: 178 KADVYATLALVWLIREKK 195 D A L+ + Sbjct: 217 LVDALACAELLQAQIQHH 234 >gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] Length = 236 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + + V + + + + + D D EA+ + GIT Sbjct: 4 IVLDTETTGLEPSEGHNIIEIGCV---EMFNRRLTGKTYHQYIKPDRDVDAEAIQVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E +F I +N FD + RN Y Sbjct: 61 NEFLEDKPKFH-EVMEEFVEFVRGAELII---HNAAFDIGFLDTELDRNGYPER------ 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182 ++ D ++ + L L G H H A D Sbjct: 111 -----------MENFSLVTDSLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 ILADVYLALTGGQTN 174 >gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] Length = 893 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D Q V Q + + + D P +T I Sbjct: 5 SYAVVDLETTGNQLDYDEIIQIGITFVRGQ-KIVGTYHS---MINTDVEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + +++ + +N+ FD + + F RN Sbjct: 61 EEDMLKQAPYFH-EVAEDVYKQLKDS---VFVAHNVSFDLTFIKKAFKRNHI------HF 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + S++L +LA A+ I NAH A D Sbjct: 111 QPKKVIDTVEL-------------FKIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ +K L Sbjct: 158 TAKLMIKAFQKFETLPLDTLK 178 >gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170] Length = 258 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 29/256 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +D ET G +VA DR + + ++V K E + E + I Sbjct: 5 LTRPICFFDLETTGTNVAHDRIVEISILKVFPNGNK----ESKTWLVNPEKDIPAEVIAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ +K + E S+ ++ + + G+N+ RFD R D Sbjct: 61 HGISNEKVANEP-TFKELSKEVYLMIKDCD--LGGFNSNRFDIPLLAEEMLRADVD---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D+ +++ ++ + + + +DL +AH A+AD Sbjct: 114 --------FDMKNMVSVDVQTIFHKMEKRTLEAAYKFYCDKDLT--------DAHSAEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239 AT ++ ++ P+L + + +KL+D + F + N Sbjct: 158 TNATYEVLLSQLDRYPELENNVKKLAEFSTHKKLVDFAGFIAMDDNEEEVFAFGKHNGKK 217 Query: 240 IA-PVAWHPRYKDSVI 254 + + P Y ++ Sbjct: 218 VLDVLDKEPGYFGWIL 233 >gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. EC4024] gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. G5101] gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. 493-89] gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. USDA 5905] Length = 246 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 238 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + R + A V + R F D D A+ + GI+ Sbjct: 4 IFLDTETTGLEHKFGHRIIEIACVEM-RNRRLTNRH--FHRYLNPDRDIDAGALSVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L F+ +F + +N FD + Sbjct: 61 REFLLDKPR----FADVAVEFLDFVRGAELVIHNAAFDVGFLNAELALLDMAP------- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + + D ++ L L G++ H H A D Sbjct: 110 ----------VDTVCHGVCDTLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 ILAEVYLAMTRGQES 174 >gi|254525958|ref|ZP_05138010.1| exonuclease [Prochlorococcus marinus str. MIT 9202] gi|221537382|gb|EEE39835.1| exonuclease [Prochlorococcus marinus str. MIT 9202] Length = 259 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D + + D ++ + S F ++ EA + G Sbjct: 36 EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEHVNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + I +N+ FD + Sbjct: 91 IS-ADVTNISQPWEDGLNFFLKLVDYSD--FIVAHNVEFDKKWFGKGR------------ 135 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I W + + + DLAL+ I N H A +D + Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKSRPSVTDLALSFSIPVWNLHRALSDCF 186 Query: 183 ATLALVWLIRE 193 + Sbjct: 187 YISEVFKKCDN 197 >gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1] gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1] Length = 649 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 50/185 (27%), Gaps = 28/185 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + R A + + P P V I +TP Sbjct: 72 VVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTL---LNPGCDPGP--VHIHNLTP 126 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q+ E E + + + + + +N FD + R Sbjct: 127 QRLAGAPRFE-EVANDLLELL---DGRTLVAHNASFDYGFLDAEVRRAGMTMPTRQ---- 178 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R L + R + + KL LA + AHDA D Sbjct: 179 --RLCTLALSR-------------RLEIDVPNHKLSTLAAHWKVRQNRAHDAYDDALVLT 223 Query: 186 ALVWL 190 + Sbjct: 224 EVFAH 228 >gi|146309558|ref|YP_001190023.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp] gi|145577759|gb|ABP87291.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] Length = 235 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 52/193 (26%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D V ++I +E + E+V IT Sbjct: 45 LVALDVETTGLDPREHAIVSLG--LVPLNLQRIRCSEARYWVVKPAGELSAESVTFHHIT 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + + + R+ + Sbjct: 103 HSDIRHAPR----LASVLDELLEALAGKVVVAHYRHIERSFLDQALRRHLGEGLI----- 153 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ ++ R S +L D L G+ +AH A D A Sbjct: 154 -FPIIDTMELEARLHPKRRVSWWNRLRGRRPLSIRLADSRLRYGLPLYSAHHALTDALAC 212 Query: 185 LALVWLIREKKPK 197 L+ K Sbjct: 213 GELLQAQVAKHYP 225 >gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 239 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + R + V V F D DPEA+ + Sbjct: 10 VVLDTETTGMNKGGTIYVGHRIIEIGCVEV-INRRLTGRH--FHVYVKPDREIDPEAIAV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + ++ + +F + +N FD + F F + Sbjct: 67 HGITDEFLHDKPA-FSDIADEFIEFIKGAE---LVIHNAPFDVGFMDQEFR--FLNKRTK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 ++ D L + R +Y L L GI++ + H A Sbjct: 121 PTAEISTITDTLVMARKMYPG--------------KRASLDALCRELGIDNKHRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPK 197 D + L+ + K Sbjct: 167 LDAEILADVYLLMTGGQKK 185 >gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735] gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735] Length = 286 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 24/198 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V++D ET G D+ DR Q + ++V + E + + Sbjct: 5 LKKPLVVFDLETTGLDIVNDRIIQLSFIKVCPDGTE-ERGDHL---INPGKHIPDMVSDL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI +K + S + + F G+N+ RFD F R D Sbjct: 61 TGIDDEKVKDAP-SFKQLSATLAEKFK--GCDFAGFNSNRFDVPMLAEEFLRAGIDFDF- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + + E AH A D Sbjct: 117 ----------------SKCRLIDAQTIFHKMEKRNLAAAYEFYCGRKMDEDFEAHRADQD 160 Query: 181 VYATLALVWLIREKKPKL 198 AT ++ + Sbjct: 161 TEATYRVLLGQLDMYSAD 178 >gi|269967099|ref|ZP_06181167.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|269828358|gb|EEZ82624.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 239 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + V ++I K D ++V I GIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPF--NLKRIFLRNSRHWKVRPQRALDEDSVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + S + + + II + R + + + + + Sbjct: 107 HSELIDAP----DLSDILSELLPCLSGKIIVVHYRRIEREFLDKALKSRLGEGIEFPVLD 162 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + R+ + + P S +L G+ H A D AT Sbjct: 163 TLHLEETIQQKRSGSLWERLKGKKPE------SVRLAQSRRRYGLPDYTPHHALTDAIAT 216 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 217 AELLQAQIAHHYSE 230 >gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] Length = 254 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 29/192 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G + +RV + + +ES E + P +TGI Sbjct: 73 FVFVDIETNGAKPQSSEIIEIGALRV-KNSQILESFESYVYAP----FVPENITELTGIR 127 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E R +F + +N+ FD + +N Sbjct: 128 QEDIQNAPQS-KEVLRAFREFL---GGGVFVAHNVNFDFSFLDYHLRQNGLFGLLN---- 179 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D+ + + + + L L GI +H A AD + Sbjct: 180 --PKLCTIDLAK--------------KTILSKRYALSYLNEFLGINTAMSHRAYADALTS 223 Query: 185 LALVWLIREKKP 196 + + P Sbjct: 224 FRIFEIAISMLP 235 >gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 247 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 26/183 (14%) Query: 5 FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + A D V V + +VF P +TGI Sbjct: 55 FVVLDTETTGFEPAGGDEVIALGAVVV-KNGRPRPE-QVFHRLVNPGRSIPPLVTALTGI 112 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E + + F + +++ FD + + + Sbjct: 113 SDEAVAG----EDDLVAVLPCFLEFLGNDCLAGHHLGFDLEF---------LNLRLREFS 159 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R LD A F L + +GIE H A D + Sbjct: 160 GAAIRNPALDTAVIARALY----------PALKYFSLDAMLSFHGIEPAGRHTALGDAWL 209 Query: 184 TLA 186 T Sbjct: 210 TAR 212 >gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 246 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLAVARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + + + + Q Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAIEGETQRQQ 200 >gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 205 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 60/217 (27%), Gaps = 26/217 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D ET G + + + A ++ ++ KP + +P+ +TGIT Sbjct: 11 FTIIDIETTGFNPESNDIIEIAAIKYQGN-IILDRFWSLI-KPEIELIPE-HISKLTGIT 67 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + F + I+ +NIRFD + N Sbjct: 68 TAMVIDQPT----VDKVLPDFLNFIENTILVGHNIRFDLAFLNKKAKEIL---------N 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + D S L +A I H A D Sbjct: 115 KTIKNPFICTDHLARKILSDID----------SKSLASIAQHFNIPFSRQHRAMYDAEVN 164 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 L + + + K K ++ + Sbjct: 165 LEIFIKMLRFLEDYNVFKVMDIIKLSEGKKVNYREKR 201 >gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] Length = 246 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARRMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILADVYLAMTGGQTSM 188 >gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] Length = 196 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 24/193 (12%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F++ D ET G V R + V++ E ++ + +TGI Sbjct: 22 FIVIDTETTGLSVRKGARLIEIGAVKIHND-ELVDEFDQL---INPFEHIPSRITGLTGI 77 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 L V E ++ S +T ++ +N FD + N + D Sbjct: 78 DDGMLLGKPDV-REVMDEFARWCS--DTAVVMAHNASFDMSFLDNAVQLAYADRD----- 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R + F + K+ L + I + H A +D Sbjct: 130 -----------ARFAHHFVDTLDLSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQ 178 Query: 184 TLALVWLIREKKP 196 L +R++ Sbjct: 179 EWMLYRAMRDEAE 191 >gi|297571869|ref|YP_003697643.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] gi|296932216|gb|ADH93024.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] Length = 228 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 19/207 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V +D ET G D +R + V V+ + +A + Sbjct: 4 SQPIVGFDTETTGVDPTRERLVTASVVVVEEDG-----VTRHYWLADPGVDIPLQASNVH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GI+ ++A R+G + + + N +D R+ + Sbjct: 59 GISTEQARREGEPVEKVLGEVADLLVQHMAAGHPVVAFNASYDLTLMECELERHGLPTLA 118 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178 G ++D +L++LA G+ ++ H+A+ Sbjct: 119 E--RLGGPVGPVIDPYMLDR---------SVDRYRRGKRRLENLAEHYGVAEDDSFHNAE 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDY 205 ADV ATL ++ + + PKL E ++ Sbjct: 168 ADVLATLRVLGSMLRRFPKLAEDTLEH 194 >gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] Length = 236 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 61/198 (30%), Gaps = 20/198 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V +D ET G DV DR A VR+D E +A I GI Sbjct: 7 TLVGFDLETTGTDVENDRIVTAALVRLDADGTVAEQ---RTWLLDPGVAIPEQASAIHGI 63 Query: 64 TPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 A R G V E + + + ++ N R+D R+ S Sbjct: 64 GTDHARRHGARAVVAVEEIAHAVAEVLRSGVPLVVM--NARYDLSLLDRECRRHGLPSVD 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 G + ++ + LQ L G+ AH+A A Sbjct: 122 -ERVGGEPSPVIDPLVIDKHV----------DKYRKGKRALQALCDHYGVALDGAHEASA 170 Query: 180 DVYATLALVWLIREKKPK 197 D A + +V + E+ Sbjct: 171 DAVAAVRVVRRMGERHRP 188 >gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289] gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289] Length = 896 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 29/218 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58 +++D ET G DV D + A +R+ R E + + + LP +P Sbjct: 514 IIVFDTETTGLDVFTDDIIEIAAMRI-RGGEIVGEPLDLYIETGKPILPKLGDKENPMYA 572 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + A + + AE + +F + T I +N +D N R Sbjct: 573 IYH---EKMAAGELLAPAE---GLCRFLTYIGTRPILGHNASYDYNILNNCLRR---YCN 623 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +GN +D L ++R + S+KL+ L + N+H A Sbjct: 624 DTMQAHGNRCFDSLKLIRLLAPSLH-------------SYKLESLLETFRLTGQNSHQAI 670 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 DV AT++LV L EK + +++ + Sbjct: 671 DDVGATVSLVRLCAEKARTKQAQQLAFIRHPKVQPFAN 708 >gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] Length = 247 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 54/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + E+ +F + +N FD + F + Sbjct: 67 AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAK--LS 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 + D L + + I+ L L GI+ H Sbjct: 121 GAIGKTSDFCKVTDTLAMAKRIFPG--------------KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739] gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50] gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739] gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1] gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489] gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007] Length = 246 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 236 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 25/187 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---STEVFFCKPADDYLPDPEAVFIT 61 FV +D+ET G + D V D ++I+ S E+F C P ++ I Sbjct: 52 FVAFDFETSGVNARQDHILSLGWV--DMTLDEIDLAASEELFVCHP---QFITAQSAQIN 106 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITP K L G+ E R+ F + + + + + R + R + + Sbjct: 107 HITP-KILSAGLTLDEAMDRL--FIRLAGKVALVHGSCIERAFVERYLQQRYGLEQFPCV 163 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W +D ++ + G + D SF+L D+ G+ +AH A D Sbjct: 164 W---------IDTLQIEKQMTYQG-----QTDIQRSFQLHDVRARYGLPQYSAHSAAMDA 209 Query: 182 YATLALV 188 AT L Sbjct: 210 LATAELF 216 >gi|149911269|ref|ZP_01899891.1| exonuclease [Moritella sp. PE36] gi|149805654|gb|EDM65654.1| exonuclease [Moritella sp. PE36] Length = 138 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 9/111 (8%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +I D+ET G + DR + V++ E + T Sbjct: 6 DTLIILDFETTGLSPDMGDRAIEIGAVKI-EDGEITGRFQELMY---PGRRVSSFIADYT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 IT + E E R F N + +N FD + R Sbjct: 62 SITNDMLVDAAPCE-EVMHRFADFIQGYN---LVAHNASFDKRFLDAELTR 108 >gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22] gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 331 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + P P V+I G+T Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 75 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ + ++ +N FD + R Sbjct: 76 SDVLEGAPL-FRDIAQEFSARLADR---VLVAHNAVFDWSMIAREYARA----------- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + KL+ LA G+ AH A D Sbjct: 121 --------ETEAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 172 Query: 185 LALVW 189 Sbjct: 173 AEAFR 177 >gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris TIE-1] gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas palustris TIE-1] Length = 276 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 32/188 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D + D + V+ D + + F E ITGI Sbjct: 23 IMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAFNEPSVPIPREITAITGI 82 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T G + + + I+ +N FD ++ + Sbjct: 83 TDGMVAGHGFDVHAVAAFV------DDAVIVIAHNSGFDRKFAERYW------------- 123 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G +L L G H AH A D +A Sbjct: 124 ----------PVFEHRAWACSVTEVDWGAHGFADAQLGYLLNGAGFFH-QAHRAVDDCHA 172 Query: 184 TLALVWLI 191 L ++ Sbjct: 173 LLEILDFT 180 >gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] Length = 222 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 58/214 (27%), Gaps = 27/214 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D R + A + + + ++ F D A + GIT Sbjct: 4 IFLDTETTGLDPNQGHRVIEIAAIEFN---NRQATSNRFHFYVNPQREIDAAAQEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F F + N + +N FD + + + Sbjct: 61 LDFLNDKPL----FVDIAADFIAFINGSELVIHNAPFDVGFLNMELGKIGME-------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + + D +++ L L A +++ H A D Sbjct: 109 ---------KLESYCDGIMDSLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQ 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 + + + + +K L+ + Sbjct: 160 LLGEVYIQMTRGQEAFTINFEEDSSKAALQSVDH 193 >gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 EDL933] gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. Sakai] gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197] gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. TW14359] gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK966] gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185] gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EDL933] gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. Sakai] gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197] gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. TW14359] gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185] gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. EC1212] gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H 2687] gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. LSU-61] gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1044] gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1125] Length = 243 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA] gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae JJA] Length = 816 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPFS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|157413038|ref|YP_001483904.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9215] gi|157387613|gb|ABV50318.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9215] Length = 248 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D + + D ++ + S F ++ EA + G Sbjct: 25 EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEQVNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + I +N+ FD + Sbjct: 80 IS-ADVTNISQPWEDGLNFFLKLVDYSD--FIVAHNVEFDKKWFGKGR------------ 124 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I W + + DLAL+ I N H A +D + Sbjct: 125 ---------LPKLNKKWICSLEDINWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCF 175 Query: 183 ATLALVWLIRE 193 + Sbjct: 176 YISEVFKKCDN 186 >gi|269963087|ref|ZP_06177423.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832219|gb|EEZ86342.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 217 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 60/215 (27%), Gaps = 16/215 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + +I D ET G +F + D + +A I Sbjct: 16 TENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNEL------VKPTCSIPADATAIH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + FS + II YN+ FD ++ Y S Sbjct: 69 GITNEDVKDAPDFHLVFSNHFLPXLN--GRLIIIYNS-DFDTRLIIQSLDKHCNAVYVQS 125 Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178 + ++ + M F W + L + ++ + AH A Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRAL 182 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 AD T L+ + + D K L Sbjct: 183 ADCEMTRRLIHAVNSQIENQNNQNCDSVTKPSLEA 217 >gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5] gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5] gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017] gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253] gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227] gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] Length = 246 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 222 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 64/213 (30%), Gaps = 28/213 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI- 63 FV+ D ET G DR +RV + +++ + F K D +V I GI Sbjct: 34 FVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERF---DRASVPIHGIL 90 Query: 64 ---TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + ++ E E + F + ++I FD + R+ Sbjct: 91 RTGSSERV-----TEREALAELLDFT---GQSPVVGHHISFDQAMIQAACQRSGL----- 137 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G R L+D + + L +LA I + H A D Sbjct: 138 ----GPLRNPLIDT----GLLYGHTLIKSPLLIKKDHYTLDELADKFDISCKDRHTALGD 189 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 Y T I E K RK Sbjct: 190 AYITAIAFLNILELLRAKRPLTTRDLLKLGSRK 222 >gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] Length = 254 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 61/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + L A+ + +F + +N FD + + + Sbjct: 66 HGISDEFLLDKP-TFADIAPEFIEFIRGAE---LVIHNATFDIGFMYYE-----FRMLQQ 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + N ++ + D + L L I++ H A Sbjct: 117 AIPNTDTFCTITDSLLMARRLF-----------PGKRNNLDALCDRYLIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + L + +N++ Sbjct: 166 LDAEILSEVYLAMTGGQTSLSFSMEGDQNQSD 197 >gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS] gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS] gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 330 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 82/295 (27%), Gaps = 38/295 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + V +S P P + G+T + Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATL---LNPGVDPGP--THVHGLTAE 73 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + + + +N+ FD + + + Sbjct: 74 MLEGAPR-FGDVVADLAELLR---GRTLVAHNVGFDYSFLTAEAELVGAELPI------D 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 S +++ R D G + +L+ LA G+ + HDA D Sbjct: 124 SVMCTVELAR-------------RLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQ 170 Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ L R ++ + + + + ++ PL V+ A + Sbjct: 171 ILKPTLARARERRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAAR--------LPCAYLN 222 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 + + + +L +RL T+ V V N+ Sbjct: 223 PGRYIAGRPLVKGMRVAVAAEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQ 277 >gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22] gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22] Length = 246 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + F + + Sbjct: 69 HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFGKLNRGIGKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 125 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + ++ + + Sbjct: 169 LDAQILADVYLMMTGGQTSM 188 >gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638] gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638] Length = 245 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTGR--NFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L F+ +F N + +N FD + + + Sbjct: 69 HGIADEFLLDKPT----FADVADEFIEYINGAELVIHNASFDIGFMDYE-FSKLNRNIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L I++ H A Sbjct: 124 TNTF-CKVTDSLALARKMYPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + L+ + + Sbjct: 169 LDAQILADVYLLMTGGQTSM 188 >gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] Length = 228 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + EA + G+ Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGRTYHQYINPERSMPEEAFQVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + F + +N FD + W Sbjct: 61 DDFLRDKPK-FAEVGQAFLDFIGDAK---LVIHNAAFDIKFLNAELGWINLPKIPWEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D LD+ R + SP L L GI++ + H A D Sbjct: 116 ----IDTLDIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + + + + P P V+I G+T Sbjct: 32 YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTL---VNPERDPGP--VWIHGLT 85 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + + ++ +N FD + R + Sbjct: 86 SDVLEGAPL-FPQVAAELSERLA---GRVLVAHNAAFDWSMIAREYARAAVTAPVEQ--- 138 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + + KL+ LA G+ +AH A D Sbjct: 139 ---RLCTIALAKELRL-------------PLPNHKLESLAAHFGVVQQHAHHALDDARVL 182 Query: 185 LALVW 189 Sbjct: 183 AEAFR 187 >gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 249 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58 FV D+ET G + D V + +CK + ++ P E+V Sbjct: 59 FVALDFETTGLNANKDDIISVGLVPF--------TIHRIYCKQSQHWVVKPKSKLDEESV 110 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + R + ++ + + + + + Sbjct: 111 IIHGITHSDVQTAP----DLRRILESVLDALAGKVVVVHYKAIERQFMDKALHVRLNEGI 166 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D L + I A G + S +L G+ H A Sbjct: 167 Q------FPVVDTLAIEAQIQAQQNSGFWARLKGKKPGSVRLGKCRSRYGLPTYQPHHAL 220 Query: 179 ADVYATLALVWLIREKK 195 D AT L+ Sbjct: 221 TDALATAELLQAQIAYH 237 >gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] Length = 892 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 29/223 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G DV D + + +++ R ++I T + LP GI Sbjct: 510 IVVFDTETTGLDVFNDDIIEISAIKI-RNGKQIGKTLDLYIYTDKTILPKL------GIK 562 Query: 65 P---QKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + + + E +++F + I+ +NI +D + N R D+ Sbjct: 563 DNPLYEIYNEKLNSGELINIKEALNEFLKFADNSILMAHNINYDYHILDNCLRRYTGDNL 622 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +D L ++R + S+KL+ L +E VN+H A Sbjct: 623 NNYN---FKYFDSLKIIRL-------------LEPSLRSYKLEHLLDKFQLEGVNSHQAI 666 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 DV+AT+ L+ ++ + ++ Q+ ++I+ Sbjct: 667 DDVWATVNLINYCAKRVKPIVSQQLNFLKDKQVFRIINKLKAY 709 >gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III, core enzyme and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)] gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407] gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] Length = 243 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae SmR1] gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G +R + V V + F+ P D + A+ + G+T Sbjct: 4 IILDTETTGLSPRNGNRILEIGCVEV-LNRQLSGKNLHFYINPERDS--EEGALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + I +N FD + + Sbjct: 61 TEFLADKP-TFKQIAAEFLDYVRGAQIII---HNAPFDVGFLDAELALLGLPPF------ 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D++D ++ L L GI H H A D Sbjct: 111 KDHVIDVVDSLQMAKELH-----------PGRRNSLDALCDRYGISNAHRVLHGALLDAE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLAEVYLSMTRGQNS 174 >gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] Length = 233 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 29/213 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G R + V +DR+ + F L D A + GI Sbjct: 4 VVLDTETTGIGHEHGHRVIEIGCVELIDRKL----TGNHFHVYLNPQRLVDEGAFRVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + A+ + + +F S I +N FD + + ++ + Sbjct: 60 SNEFLQDKPL-FADVAEKFWRFISGAELII---HNAPFDVGFLNSELQLINWNKKLEVY- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 D L + R Y + L L GI+H N H A D Sbjct: 115 --CKITDTLVLAREKYPGQRN--------------SLDALCKRYGIDHFNRELHGALLDA 158 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 + + + LF + + + Sbjct: 159 EILAFVYLAMTGGQTSLFAEVEETSLHVNSKSQ 191 >gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 362 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 65/221 (29%), Gaps = 30/221 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV D+ET G D D+ + V+ + ++ + + I G Sbjct: 59 KEFVALDFETTGLDYRNDKIVEIGAVKY-KDEKETDKFHFL---INPHIHIPEKITKING 114 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I E ++ F I +N RFD + N Y Sbjct: 115 IEDSMVKDSP-SINEVIPKLIDFM---GNLPIVVHNARFDIDFLDENMSDNKYR------ 164 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GNS D L + R ++ + + +LQ + I+ N+H A D Sbjct: 165 --GNSVIDTLSISRKMF-------------ENIDNHRLQTIKDYLKIDL-NSHRAIDDAK 208 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 + + + + R + L P+ Sbjct: 209 VAAEIYLKYCREGYPIKKDYDKLRKQKNKINLETSFKYDPI 249 >gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073] gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89] gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073] gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89] gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972] gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146] gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3] gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1] gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3] gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] Length = 246 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 270 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 53/192 (27%), Gaps = 9/192 (4%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A + + A + GIT + Sbjct: 12 FDLETSGVDVEADRIVTAAA--YGLGGGEPVEPHDWM--LDPGVEIPAGATAVHGITTDE 67 Query: 68 ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A G I + + +N+ +D R + G Sbjct: 68 ARAKGEPAPGGIDHISDVLAEYARAGVAVVGHNVPYDFTLLDRECRRYELPTL--HDRLG 125 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + ++D R + + + PS+D GA + AH A D Sbjct: 126 ETPLYVIDT-RVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAYDAVLAA 184 Query: 186 ALVWLIREKKPK 197 + + I Sbjct: 185 RVAYRIGTLAHM 196 >gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA17545] Length = 816 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVF 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 255 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + + F D E Sbjct: 21 KRIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRKLTGRH--FHVYIKPDRAIQEE 77 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E + + +F + +N FD + F + D Sbjct: 78 AIGVHGITDEFLVDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFEK--LD 131 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D LD+ + I+ L L GI+ H Sbjct: 132 PTIGKTDDYCKVTDTLDMAKKIFPG--------------KRNNLDILCERYGIDNSHRTL 177 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200 >gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFNV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ ++ + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFADVCDEFLEYIRGAE---LVIHNASFDIGFMDYE-FSKLNRGIAK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILADVYLAMTGGQTSM 188 >gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 30/204 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAM 192 >gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585] gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 70585] Length = 816 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVF 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] Length = 243 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + F + + Sbjct: 66 HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFGKLNRGIGKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + ++ + + Sbjct: 166 LDAQILADVYLMMTGGQTSM 185 >gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS 2060] gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 223 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 52/183 (28%), Gaps = 19/183 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D D A +R+ +I ++E F PEA+ + + Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGD--RILTSESFRATVQSQRPSSPEAIKVHRLLE 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + G+ + +F + + FD R Sbjct: 90 AEIR-QGMPHDVMLPELLRFI---GSRPVVGYYTDFDVGMVDKYARRILR------IRLP 139 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N R D+ A + D +A G+ + HDA D T Sbjct: 140 NPRIDV-------SALYYACKYRDAPDYVKIDLSFARIAADLGLPALPQHDAFNDALMTA 192 Query: 186 ALV 188 + Sbjct: 193 MMY 195 >gi|328468890|gb|EGF39850.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 248 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 58 FVSVDFETTGLNAEDDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 112 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + I + ++ + R F+ + + Sbjct: 113 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 159 Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178 ++ ++D + YA W S +L G+ H A Sbjct: 160 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 219 Query: 179 ADVYATLALVWLIREKK 195 D AT L + Sbjct: 220 TDALATAELFQAQLQYH 236 >gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As] Length = 239 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + A DR + AGV + + D P+A+ + G+T Sbjct: 5 IVLDTETTGLNPASGDRIIEVAGVEL-FNRRLTGKHYHAY--LNPDRASHPDALKVHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + + +F I +N FD + R ++ Sbjct: 62 EEFLSDKPR-FAQIADDLLEFVRDAEIII---HNAPFDCAFLDAELERLNRPAF------ 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D + L L GI+ H H A D Sbjct: 112 -----------KQHVPLVTDTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAE 160 Query: 183 ATLALVWLIREKKPKLFEYL 202 + + + L L Sbjct: 161 LLAEVYLSLTRGQESLVIDL 180 >gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 457 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 30/210 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + ++ + + + D ++ IE + +TGI Sbjct: 2 YTIIDIETTGNGIQGNKITEISIFKYD-GYDVIEEFTTL---INPEAEIPYFITGLTGID 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + +I + I +N+ FD ++ F D R Sbjct: 58 NTMVRNAPK-FSEVADQILKITEE---TIFVAHNVSFDYNIIKHEFKAIGVDFIRQK--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L A I + H A+ D AT Sbjct: 111 -------LCTVRLSRKLF----------PGYNSYSLGKLCTALKIPLTDRHRARGDAEAT 153 Query: 185 LALVWLIREKK--PKLFEYLYDYRNKNQLR 212 L + ++F+ + R++ Sbjct: 154 TILFEKLLRVDATGEVFKSFLNARSQEATL 183 >gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] Length = 213 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 30/178 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ + D+ET G A R + A V + Q ++ + P Sbjct: 1 MSAAIAVIDFETTGMTPAQGARATEVAIVLL-EQGRVVDRFQSLMQA---GAWVSPFITE 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT AE R +F + +N FD + + Sbjct: 57 LTGITNAMLRTAP-PAAEVMRDAARFV---GGAPMVAHNASFDSKFWQAEL--------- 103 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 L A F+ + A S L +LA AH Sbjct: 104 -----------ALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPSTGRAHR 150 >gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + F + + Sbjct: 69 HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFSKLNRGIGKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 125 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + ++ + + Sbjct: 169 LDAQILADVYLMMTGGQTSM 188 >gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX] gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 250 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 19/172 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G ++ DR A + + PEAV I GI+ + Sbjct: 19 FDIETTGINLEQDRVVTAAIIETAADGSQRTR---RTWLVNPGVEIPPEAVAIHGISTEL 75 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ DG+ I T ++ N FD R Sbjct: 76 AVADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAP-FDLTILDRECRRYGVVPLS----- 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R D + + ++ L+ L G+ + +H+ Sbjct: 130 --ERLDTVAPVIDPLILDRHIDRY-----RRGKRTLEALCAHYGVPYDGSHE 174 >gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] Length = 816 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + + ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDHYST---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPEMEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKIAQLPKGLLE 178 >gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 900 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 31/217 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFC--KPAD---DYLPDP 55 T V++D ET G +V D Q A V++ S VF +P +P+P Sbjct: 514 TEEIVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTERPIPAMLGDIPNP 573 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I + + ++ + F ++ +N FD R R Sbjct: 574 -------IVAELQRNTCLP---AAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQR--- 620 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 +D+ + G +KL+ L +E N+H Sbjct: 621 ------------YCPSIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLEVLHLEGTNSH 668 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 A DV AT++LV R+K ++ + + +++ Sbjct: 669 LADEDVQATVSLVGYCRQKAAEMIPAQQQFLARQRVQ 705 >gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536] gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536] gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2] gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 196 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 7/114 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G A DR + + VD + +I+S F I G+ Sbjct: 25 IFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAF---INPQRKVPWFVTRIHGLNN 81 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + + ++ R + F +N+ FD F RN + Sbjct: 82 EFLDDKP-IFSDIGRDLLLFLEGSELW---AHNMSFDAGMLNAEFARNRLPTLE 131 >gi|91227218|ref|ZP_01261677.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|91188746|gb|EAS75034.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] Length = 239 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + V ++I K D ++V I GIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPF--NLKRIFLRNSRHWKVRPQRALDEDSVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + + II + R + + + + + Sbjct: 107 HSELIDAP----DLGDILSELLPCLSGKIIVVHYRRIEREFLDKALKSRLGEGIEFPVLD 162 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + R+ + + P S +L G+ H A D AT Sbjct: 163 TLHLEETIQQKRSGSLWERLKGKKPE------SVRLAQSRRRYGLPDYTPHHALTDAIAT 216 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 217 AELLQAQIAHHYSE 230 >gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 2457T] gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301] gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC 35469] gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301] gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC 35469] gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71] gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70] gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671] gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71] gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6] gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272] gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227] gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304] Length = 243 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 330 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 79/284 (27%), Gaps = 38/284 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + + P P V+I G+T Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTMVNPERDPGP--VWIHGLT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + +F + ++ +N FD + R + Sbjct: 77 SEALEGAPL-FQDIAE---EFTTRLEGRVLVAHNAVFDWQMIAREYARAQREVP------ 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + KL+ LA G+ AH A D Sbjct: 127 -------------VRQRLCTIALSKELGLPLPNHKLESLAAHYGVVQRRAHHALDDARVL 173 Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA- 241 L + R + TP + +G R + + Sbjct: 174 AEAFQPSLRAAAAGGVRLPLLECR----PLTEWSDRPATPRIGQQAGYGGYRPTSWRPSR 229 Query: 242 --PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283 P +P G L MRV D+ + L + Sbjct: 230 KRPACPYPNPGRYEPGGRLKQGMRVAFSGDTSTERELLEDRATD 273 >gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 30/208 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + F + D + Sbjct: 69 HGIADEFLLNKP-TFADVADEFLDYIRGAE---LVIHNASFDIGFMDYEFSKLNRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206 D + + + + + + Sbjct: 169 LDAQILADVYLTMTGGQTSMKFSMENES 196 >gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] Length = 238 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 73/247 (29%), Gaps = 32/247 (12%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 N ++ D ET G ++ R + V + + F D PE Sbjct: 10 NRIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPE 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + ++S +F + +N FD + F D Sbjct: 67 AIGVHGITDEFLVDKP----DYSHVHQEFLDFIKGAELVAHNAPFDTGFMDYEFE--MLD 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 121 PAIGKTDDFCKVTDTLAMAKKIFPG--------------KRNNLDILCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 H A D + L+ + F +R++ + + L + A Sbjct: 167 HGALLDAEILADVYLLMTGGQTSLEFNANKKNGEPEGIRRVQGRKALKVLRATADEVEAH 226 Query: 234 RSNTALI 240 + L+ Sbjct: 227 QKRLELV 233 >gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS] gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 330 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 84/295 (28%), Gaps = 38/295 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + V +S P P + G+T + Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATL---LNPGVDPGP--THVHGLTAE 73 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + + + +N+ FD + + + Sbjct: 74 MLEGAPR-FGDIVADLAELLR---GRTLVAHNVGFDYSFLTAEAELVGAELPI------D 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 S +++ R D G + +L+ LA G+ + HDA D Sbjct: 124 SVMCTVELAR-------------RLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQ 170 Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ L R ++ + + + + ++ PL V+ + +A Sbjct: 171 ILKPTLARARERRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAARLP--CAYLNPGRFIA 228 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 P + + + +L +RL T+ V V N+ Sbjct: 229 GRP------LVKGMRVAVAAEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQ 277 >gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736] gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli] gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1] gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9] gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC 74-1112] gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905] gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11] gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120] gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3] gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] Length = 444 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 75/253 (29%), Gaps = 35/253 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G +R + + + + I+ + +TGI Sbjct: 3 YTIIDVETSG---RTNRITEISIFKYHEN-KIIDEFTSL---VNPNCYIPEHITALTGID 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + ++ + CI +N+ FD R F R D R Sbjct: 56 NNTVANAPE-FSEIANKVLEITKD---CIFVAHNVNFDYNVIRKEFKRLEIDFTRKK--- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L L I H A+ D AT Sbjct: 109 -------LCTVRLSRKLL----------PGHRSYSLGKLCKDLNICINGRHRARGDAEAT 151 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH---VSGMFGASRSNTALIA 241 + L + + + E + NKN + + + + + S ++ + Sbjct: 152 VILFKKL-QAQENAKEIFLKFLNKNSKQATLPPNLPSEVFNNLPNSTGIYFFKNKKGKVV 210 Query: 242 PVAWHPRYKDSVI 254 V K V+ Sbjct: 211 YVGKAKDIKKRVL 223 >gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi str. 1704B] Length = 259 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 V+ D ET G V R + V E I F D D A+ + Sbjct: 11 VVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 1009 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 33/217 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + A ++ + E +++ E F +TGI P Sbjct: 9 IALDLETTGLHAEQDAILEVAAIKF-QGSEVLDTFETFIS---PGRSIPYRVQRLTGIKP 64 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + SR++H F I ++I FD + R + Sbjct: 65 ELLVGAP-PFDAISRQLHTFL---GDYPIVGHSIPFDVGFLRRWGLAHSNPM-------- 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYAT 184 D ++ +S+ L +A + GI+ + H A D Sbjct: 113 ---VDTFELA-------------TVLLPSLSSYNLGQVAHSLGIQVPSDRHRAMVDTVLA 156 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + + + E+ + L + + + + Sbjct: 157 MQVFLSLYERLQTVDLALLQDLARLDAPRSWPLLHFF 193 >gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1] gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 247 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 26/198 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D + A V+V ++ ++ +VF + E++ GI Sbjct: 62 KFCVIDTETTGLDFETAKLINIAAVKV-VNFKILDIYDVF---INPEIPIPEESIKWHGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + F +I +++ FD + + W Sbjct: 118 TDDMVKDKPT----VAEILPDFLKFIRDSVIVGHHVNFDLKMINKDLKLYYGSEIKNIWI 173 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + R + L L ++ + H A D A Sbjct: 174 DTMFLYSKNILCRDDHI------------------SLDFLLEKFNVKCIGRHTALGDALA 215 Query: 184 TLALVWLIREKKPKLFEY 201 T + I K F+ Sbjct: 216 TAEVFNKIVVKMKNGFKT 233 >gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] Length = 248 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 55/214 (25%), Gaps = 27/214 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G DR + V V + + P D P+A+ + G+T Sbjct: 4 IVLDTETTGLYANDGDRIIEIGCVEV-LNRRVTDHHFHQYINPERDS--HPDALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++ F + +N FD + R Sbjct: 61 TEFLSDKPK-FAEIAQAFCDFIKGAE---LVIHNAPFDVGFLNAELARLNLPP------- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + + + D + L L I+ H H A D Sbjct: 110 ----------VEELASCITDSLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAE 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 + + + L + + Sbjct: 160 LLAEVYLAMTRGQETLEIEKLTLSAAEEEARKNH 193 >gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401] gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401] Length = 246 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLVVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX] gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX] Length = 516 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 10/114 (8%) Query: 4 HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D ET G + R + A VR+ ++ P G Sbjct: 20 TYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTL-VNPGSSIRNSAF----HG 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 IT + + + + + I+ + + F++ + F R Sbjct: 75 ITDTWVKTAP-SFDQVAGDLLAYL---DGAIVVGHKLDFEEKFLAAEFARLGVP 124 >gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116] Length = 238 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 N V+ D ET G ++ R + V + + F D P+ Sbjct: 10 NRIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPD 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E+S +F + +N FD + F + Sbjct: 67 AIGVHGITDEFLVDKP----EYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFE--MLN 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 121 PSIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047] gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047] gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] Length = 256 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G R + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHRIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F++ + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFHKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|218514224|ref|ZP_03511064.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 312 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 60/217 (27%), Gaps = 32/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + D + V D + ++ E +TGI Sbjct: 61 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPREVTRLTGI 120 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + R + +I +N FD + Sbjct: 121 TDAMVEGQVID----IRSLSDLIE--PADLIIAHNAGFDRPFCEA--------------- 159 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L G H H A D +A Sbjct: 160 --------FSPLFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 210 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ + + F LY ++++R + Sbjct: 211 LLEILDRQQGEGESPFAELYRASQRSRIRIFAEHSPF 247 >gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 243 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + F + + Sbjct: 66 HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFSKLNRGIGKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + ++ + + Sbjct: 166 LDAQILADVYLMMTGGQTSM 185 >gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937] gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937] Length = 244 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYLRPDRLVDPEAYNV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TYGDVVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLKRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 122 E--TFCTITDSLQMARRLFPG--------------KRNNLDALCDRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 LDAEILAEVYLAMTGGQTS 184 >gi|262274601|ref|ZP_06052412.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262221164|gb|EEY72478.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 245 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 12/190 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G D + + V + + KP + E+V GIT Sbjct: 55 FVALDLETTGLDPSQNDIISIGLVPFTLDRIYCRDAKHWIVKPR--RPLEAESVVFHGIT 112 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + + + I+ + R + + +S Sbjct: 113 HSDVSDAP----DLRRILEEVLASLEGKIVVAHYRRIERDFLEAAVESRLGESLL----- 163 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ Y TS +L D + H+A D AT Sbjct: 164 -FPVVDTLEIESWYYRKPIQKFWSYVLKKPLTSIRLADSRRRYNLPFYQGHNALTDAIAT 222 Query: 185 LALVWLIREK 194 L+ Sbjct: 223 AELLQAQIAH 232 >gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 242 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 VI D ET G + R + V V + F D EA+ Sbjct: 11 VILDTETTGMNQGAGAVYFGHRIIEIGCVEV-INRKLTGRH--FHEYINPMQAIDEEAIT 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + V A+ + +F + I +N FD + + F + Sbjct: 68 VHGITNEFVADKPV-FAQIAPAFLEFI---DGAEIVAHNANFDVSFMDHEF--SLLTPRG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 + D L++ + ++ + L L GI++ H A Sbjct: 122 PKTTDICQVLDSLEIAKFLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188 >gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88] gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a] gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39] gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026] gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354] gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88] gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39] gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a] gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026] gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli] gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354] gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034] gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252] gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263] Length = 243 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str. E2348/69] gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str. E2348/69] gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] Length = 243 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82] gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str. NRG 857C] gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327] Length = 243 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium sticklandii DSM 519] gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium sticklandii] Length = 828 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 25/186 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G D+ D+ Q A ++ + ++ E F K ++ I I+ Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALKGGKNG-VLQKFE-RFIKIDYSV---GDSFKIHNISD 523 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + ++GV + I F +I +N+ +D + + Sbjct: 524 EFLFQNGV---DAKSAIDDFLLFSQDSVIVGHNVSYDINILKENMKAIDLNID----KLS 576 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D L + R Y S+KL +L + H H+A DV TL Sbjct: 577 SKIFDTLILTRKTYPGFF-------------SYKLGNLFKEFSLNHTPTHNAMDDVICTL 623 Query: 186 ALVWLI 191 ++ + Sbjct: 624 EVLEKV 629 >gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 248 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 57/215 (26%), Gaps = 30/215 (13%) Query: 7 IYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D ET G + + V V F D EA+ + Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKVH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + V AE + +F I +N FD + F + Sbjct: 59 GITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLGNPPPKT- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 S D L V R +Y L L GI++ H A Sbjct: 114 -AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGALL 158 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L N + L Sbjct: 159 DAEILADVFLMMTGGQLALLGEEDASANHENIADL 193 >gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1] gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1] Length = 926 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI Q + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL GI+H++ H A +D Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I K L + + + Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186 >gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] Length = 180 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 32/194 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G DR + A V + IE F C + I GIT Sbjct: 14 IAVDVETTGLSPRRGDRVIEVAAVAIVNG--VIEEH--FCCLINVNAPIPTVVQKIHGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + EA +F + I+ +N FD + RN S Sbjct: 70 PELLAGEKPPEA----VWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGSQ-- 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHV-NAHDAKADV 181 + ++P + KL+++A G+ H A D Sbjct: 124 --------------CTLAFSRKKFP----QLKNHKLENVARHVLGGMPKGIKLHRASGDA 165 Query: 182 YATLALVWLIREKK 195 T + +I + Sbjct: 166 LLTAMIWQVIENTQ 179 >gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78] gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78] Length = 664 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 53/181 (29%), Gaps = 28/181 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DR A V + E+ P P V + G+T ++ Sbjct: 75 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTL---VDPGCDPGP--VDVHGLTRER 129 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + R+ ++ +N +FD + + F R Sbjct: 130 LSGAPA-FGQIAGRLGAMLQDR---VLVAHNAQFDYDFLAHEFARARLYLPVT------R 179 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R L + R + D KL LA G+ AHDA D + Sbjct: 180 RLCTLALNRQV-------------DPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGI 226 Query: 188 V 188 Sbjct: 227 F 227 >gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis TAC125] gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas haloplanktis TAC125] Length = 237 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 32/220 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M ++ D ET G D R + V V+R+ + F + EA+ Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRL----TGNNFHVYINPQRNSEEEAI 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + ++ + ++ +N + N Sbjct: 57 DVHGITNEFLRDKPLFH-QIAQEFFDYIK--GAELVIHNAPFDIGHMDNEFSLLNQGYPK 113 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 ++ D L + R ++ + L L +++ H Sbjct: 114 TATF---CQVLDTLKMARDLHPGQKN--------------NLDALCRRYDVDNAKRTLHG 156 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 A D + + + L +NKN Sbjct: 157 ALLDSEILADVYLAMTGGQ----VKLNLNQNKNDDTDQQK 192 >gi|120553208|ref|YP_957559.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8] gi|120323057|gb|ABM17372.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 240 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + V ++ +P +V I GIT Sbjct: 50 LVALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRPR--LPLHKTSVTIHGIT 107 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + F N I + + + N Sbjct: 108 HSEIENAPDLE----DVLDPLFEHLNGRIPVVHYRNIERPFLNTALQWRL---------N 154 Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181 R+ ++D M P+ +W S +L D L G+ H +H+A D Sbjct: 155 EQLRFPVIDTMAIEAHLHPNRNPSRWQQLMGKKPISIRLADSRLRYGLPHYASHNALIDA 214 Query: 182 YATLALVWLIREKK 195 AT L+ Sbjct: 215 IATAELLQAQVLHH 228 >gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15] gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86] Length = 243 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|123968212|ref|YP_001009070.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. AS9601] gi|123198322|gb|ABM69963.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. AS9601] Length = 259 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D + + D ++ + S F ++ EA + G Sbjct: 36 EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEHVNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + + I +N+ FD + Sbjct: 91 IS-AEVTNISQPWEDGLNFFLKLVDSSD--FIVAHNVEFDKKWFGKGR------------ 135 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I W + T + DLAL+ I N H A +D + Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCF 186 Query: 183 ATLALVWLIRE 193 + Sbjct: 187 YLSEVFKKCDN 197 >gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 238 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 18/172 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66 +D ET G D R A + V AD +P PE AV + GI+ + Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRG-----GEPSGRREWLADPGVPIPEDAVAVHGISTE 65 Query: 67 KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +A +G + + + + + + N FD R+ S R Sbjct: 66 RAAAEGRPADQVADAMAEVLTSYWKTGVPVVAYNAAFDLTLLSAELRRHGLPSLR----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 D L + P I L+ + G+ +AHD Sbjct: 121 -----DRLGGVDPAPVIDPYTIDRWVDRYRRGKRNLEAVCAEYGVVLDSAHD 167 >gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046] gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227] gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A] gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS] gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94] gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11] gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1] gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989] gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088] gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9] gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046] gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227] gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS] gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A] gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94] gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11] gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989] gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1] gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088] gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83] gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B] gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010] gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G] gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68] gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180] gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357] gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167] gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74] gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82] gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74] gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9] Length = 243 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. W3110] gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B] gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli] gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12 substr. W3110] gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1] gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431] gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482] gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88] Length = 243 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] Length = 220 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 23/212 (10%) Query: 4 HFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+++D ET G V A DR + V V + ++ E ++F E +T Sbjct: 27 SFIVFDTETTGFQVSATDRIIEIGAVPV-KGFQVQEK-DLFQTYVNPKRQISREIRELTS 84 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + E + + + + FD ++ F R + Sbjct: 85 ISDELVKDAPQAL-EAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKR---EKLALKN 140 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DL+ + Y L+ A+A G + H A D Sbjct: 141 FLTIDTLDLIGFIAPSYDMRD----------------LERYAMAFGTRIYDRHSAVGDAL 184 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 T L + + + + + K ++ Sbjct: 185 TTAYLYVELLFQFQQRGQKTWGELIKATDSQM 216 >gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115] gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115] Length = 1683 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 72/232 (31%), Gaps = 23/232 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +VI D ET D A R + A VRV ++ ++ E +TGI Sbjct: 8 SYVILDTETTSVDRAEARLLEVAAVRV-EDGRICDTLQLLVS----GERIPREVAELTGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ RDG + +++ F ++G+N FD Sbjct: 63 RQEELDRDGQPLPDVLKQVLAFMGDLP--VVGHNAQGFDVP---------LLKRLCREQS 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVY 182 + D + + L+ L A G H +AH AD Sbjct: 112 LKFQVPFVFDTLLLAPLAFAAV------VPPVEGYGLEGLHARFCGDVHDDAHRTLADCA 165 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 AT L+ + E+ L E + + +L + +SR Sbjct: 166 ATSRLLAYMVERLRALPEDQKALISALPVPELALAFQPRSITKAELERLSSR 217 >gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] Length = 302 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 23/210 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +IYD ET G Q + +++ + A + IT Sbjct: 33 IIIYDTETTGTGK-KAYIVQISALKLSP-GNPYYIVDTLDQYIRPPIPMPAAASAVNHIT 90 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E I FF PN +I GYN+I FD+ N++ R ++ W Sbjct: 91 DEFLEDKP-SEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAGLTFDPKW- 148 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---HDAKAD 180 D L + R + + F L +A GI+ H+A D Sbjct: 149 ----NVDALVMARCL---------VDRNEITDGRFTLASIAETYGIKTDEDQQLHNAMTD 195 Query: 181 VYATLALVWLI--REKKPKLFEYLYDYRNK 208 + T+ ++W + L + K Sbjct: 196 IQVTMKVMWALINDYVDSGLEQVYLSQSTK 225 >gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 206 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 18/191 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F +D ET G DV D V++ KI+ + F+ + +P+ E + I I Sbjct: 34 TFCSFDLETTGLDVEKDEIISIGAVKIKEM--KIDLSTSFYRIVKPERIPEKENILIHSI 91 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ G + + ++ T +IGY S+ + Sbjct: 92 TASE-MKKGEDIRDVLPKFLEYIK--GTVLIGYFVSFDISMLSKYTQKFYGFPILN---- 144 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + ++ + + L +A I H+A D Sbjct: 145 ---------PYIDVSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSIT 195 Query: 184 TLALVWLIREK 194 T + + ++ Sbjct: 196 TALIFLSLMKR 206 >gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans DMS010] gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans DMS010] Length = 245 Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 26/193 (13%) Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI D ET G A D R + V + F D A+ + GIT Sbjct: 10 VILDTETTGISTADDHRIIEIGCVEM-VNRRLTGQ--TFHQYINPQRDIDAGAIEVHGIT 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + F + +N FD + + + D + Sbjct: 67 NEFLADKPL-FTEIAEEFLSFIEGAE---LVIHNAPFDVGFINHELAK--LDGETRRVET 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 ++ D L + R + + L L + + N H A D Sbjct: 121 LSTVLDTLKMARDKHPGQKN--------------NLDALCKRYDVNNANRELHGALLDAE 166 Query: 183 ATLALVWLIREKK 195 + + + Sbjct: 167 ILADVYLAMTGGQ 179 >gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis DSM 265] gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM 265] Length = 221 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 23/190 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D+ DR V ++ I +S EV +P E+V + G+ Sbjct: 34 FVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPGVG---QKESVSVHGL 90 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + GV E + + F I+ + FD + + F Sbjct: 91 LKKDIA-SGVSERD---GVTSFLDYIGNSILVAQHASFDVAMLNRLLWELF--------- 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADV 181 R L + + + + + P + + ++L L GI + H + D Sbjct: 138 ----RIRLFNGVVDTASLAKRLEKGPYHNLAHKAGEYRLDHLCQRYGIRLHDRHTSAGDA 193 Query: 182 YATLALVWLI 191 Y T L+ + Sbjct: 194 YLTAQLLQRL 203 >gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 234 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G V DR + + + S + +PEAV + G+T Sbjct: 4 IFLDTETTGLSAVDGDRLVEVGCI---EMLNRRLSGRTLHHYLNPERSSNPEAVKVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A + +F I +N FD + R + Sbjct: 61 DEFLADKPL-FAAVADEFIEFVRDAELII---HNAAFDVGFLDAELTRLGKP---RLVEL 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 G + D L + R ++ + L L +++ N H A D Sbjct: 114 GCTITDSLVMARQLFPGKAN--------------SLDALCKRLEVDNSNRALHGALLDAG 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLAEVYIRMTRGQDS 174 >gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] Length = 244 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 30/198 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V + D L DPEA + Sbjct: 10 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNYHVYLKPDRLVDPEAFGV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + A+ + ++ + + +N FD + F + + + Sbjct: 67 HGIADEFLADKP-TFADIADGFLEYI---DGAELVIHNASFDIGFMDYEFAKLGRNIPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 123 E--TFCRITDSLAMARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKP 196 D + + + Sbjct: 167 LDSEILAEVFLAMTGGQT 184 >gi|332715841|ref|YP_004443307.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3] gi|325062526|gb|ADY66216.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3] Length = 326 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 39/244 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + D + + D Q + T V+ E +TGI Sbjct: 74 VILDTETTGLNHRTDEIIEIGVITFTFDDQGTIGDVTGVYGGLRQPGTSIPEEITRLTGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + R+ +I +N FD + Sbjct: 134 TDEMVAGQTID----IDRLTSLVE--GADLIIAHNAGFDRPFCEA--------------- 172 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L +G H H A D +A Sbjct: 173 --------FSPIFRNKAWACSVSEVDWSGRGFEGSKLAYLIGQSGYFHDG-HRAVDDCFA 223 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA-------SRSN 236 L ++ +R + +++ ++ + + G R Sbjct: 224 LLEVLEQVRAGQSGTPFMELHEASQHSRVRIYAENSPFDMKDHLKKRGYRWSDGSDGRPK 283 Query: 237 TALI 240 + + Sbjct: 284 SWWV 287 >gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47368] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVVLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 246 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRDAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D + + + + + + Q Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200 >gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2] gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2] Length = 214 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 30/178 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ + D+ET G A R + A V + Q ++ + P Sbjct: 2 MSAAIAVIDFETTGMTPAQGARATEVAIVLL-EQGRVVDRFQSLM---QTGAWVSPFITE 57 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT AE R +F + +N FD + + Sbjct: 58 LTGITNAMLRTAP-PAAEVMRDAARFV---GAAPMVAHNASFDSKFWQAEL--------- 104 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 L A F+ + A S L +LA AH Sbjct: 105 -----------ALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPSTGRAHR 151 >gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974M2] gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|308125815|ref|ZP_05777630.2| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|308111533|gb|EFO49073.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 247 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 57 FVSVDFETTGLNAEDDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 111 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + I + ++ + R F+ + + Sbjct: 112 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 158 Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178 ++ ++D + YA W S +L G+ H A Sbjct: 159 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 218 Query: 179 ADVYATLALVWLIREKK 195 D AT L + Sbjct: 219 TDALATAELFQAQLQYH 235 >gi|149190815|ref|ZP_01869080.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835377|gb|EDL52349.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 239 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 12/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + D V + +++ + +P + E+V I GIT Sbjct: 49 FVALDFETTGLNPDKDGILSIGLVPFNASRIRLKQAAHWTIRPK--AKLEEESVVIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L E + + II + + + + R + Sbjct: 107 HNDILDAP-TLDEVLGDVLSALA---GKIIVVHYRPIERGFLNSALKRMIGEGIE----- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + GI + A S +L G+ H A D AT Sbjct: 158 -FPVVDTMQIESDYQSRLTGGIINKLKGKRADSVRLGQSRRRYGLPDYPPHHALTDAIAT 216 Query: 185 LALVWLIREKK 195 L+ Sbjct: 217 AELLQAQLAYH 227 >gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863] Length = 246 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1] gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M644/93/1] gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1] gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M644/93/1] Length = 329 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 35/186 (18%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + A + + V R + F E ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAE---ITGI 130 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E I + II +N FD + Sbjct: 131 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 166 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L + A ++ + G KL L +G H N H A+ D A Sbjct: 167 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 220 Query: 184 TLALVW 189 LA++ Sbjct: 221 LLAVLK 226 >gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] Length = 213 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 30/178 (16%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ + D+ET G A R + A V + Q ++ + P Sbjct: 1 MSAAIAVIDFETTGMTPAQGARATEVAIVLL-EQGRVVDRFQSLM---QTGAWVSPFITE 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT AE R +F + +N FD + + Sbjct: 57 LTGITNAMLRTAP-PAAEVMRDAARFV---GAAPMVAHNASFDSKFWQAEL--------- 103 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 L A F+ + A S L +LA AH Sbjct: 104 -----------ALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPSTGRAHR 150 >gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031] gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae P1031] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 59/418 (14%), Positives = 125/418 (29%), Gaps = 54/418 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L + ++ + ++ + S + Sbjct: 157 ATAELLLFLREKMTQLPKGLLERLL--EMADALLYESYLVIEETYRNQSILSSPDLVQVQ 214 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 + + S+ LS D L ++++ + + E+ + L P+ Sbjct: 215 GLYFKKMAASLEPRKLSQDFSKNISLLNLEVREEQESFAKEVG---------LLLKDEPV 265 Query: 303 -LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 L+ + + + E +L T + + ++ Sbjct: 266 SLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIH 323 Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 324 SLKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218] Length = 243 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAVFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319] gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319] Length = 197 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 32/201 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G + A V E I+ E + P +TGI Sbjct: 11 VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +++ + + I +N FD + Sbjct: 71 TNEMVKNKTLDD----KKVESLLTSVSAII--AHNASFDRSFLL---------------- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R+ L + + + + G + KL L + IE +AH A DV Sbjct: 109 ---KRYPSLSNQKWHCSMRAVKWK----EYGFPNKKLTTLLDHHNIEREHAHRAMDDVKG 161 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ L+ F + Sbjct: 162 TIDLLRQQNPSGEPYFSEVLK 182 >gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Hungary19A-6] gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Hungary19A-6] gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA04375] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] Length = 229 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 66/220 (30%), Gaps = 30/220 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + + + E + + EA + G+ Sbjct: 4 IVLDTETTGFEPEQGDRIVEIGAV---ELFNHVPTGETYHQYINPERSMPQEAFAVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F++ + +F + + +N FD + + Sbjct: 61 DDFLRDKPV----FAKIVDEFRTFIGDSKLVIHNAAFDVKFLNAELRWANRPTLA----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D LD+ R + SP L L GI++ + H A D Sbjct: 112 KDCAIDTLDIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + + K F L N + + + P Sbjct: 158 ILAEVYLELIGGKQPDFG-LTSASNTPSVGETVTNWRPKP 196 >gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens MBEL55E] gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 260 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + KP D L DPEA+ + Sbjct: 11 ILLDTETTGMNQFGAHYEGHCIIEIGAVEM-INRRYTGRKLHLYIKP--DRLVDPEAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V E ++ F I +N FD + F ++ D Sbjct: 68 HGITDEMLEDKPV-FTEVAQEFIDFIKGAELLI---HNAPFDVGFMDYEFRKHHIDVKT- 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + S D L + R +Y L L GI++ H A Sbjct: 123 --ADICSVTDTLQLARQMYPG--------------KRNSLDALCDRLGIDNTKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + ++ + LF+ Sbjct: 167 LDAEILGDVYLVMTGGQTSLFDD 189 >gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14] Length = 246 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] Length = 926 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI Q + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL GI+H++ H A +D Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I K L + + + Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186 >gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551] gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551] Length = 197 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 32/201 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G + A V E I+ E + P +TGI Sbjct: 11 VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + +++ + + I +N FD + Sbjct: 71 TNEMVKNKTLDD----KKVESLLTSVSAII--AHNASFDRSFLL---------------- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R+ L + + + + G + KL L + IE +AH A DV Sbjct: 109 ---KRYPSLFNQKWHCSMRAVKWK----EYGFPNKKLTTLLDHHNIEREHAHRAMDDVKG 161 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T+ L+ F + Sbjct: 162 TIDLLRQQNPSGEPYFSEVLK 182 >gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae FF5] gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 259 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(high)] Length = 1494 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 74/227 (32%), Gaps = 31/227 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-----FCKPADDYLP-DPEA 57 FVI+D ET G + ++ + A VRV + F F K + P Sbjct: 409 SFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKKPLSKFT 468 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ E F + ++ +N I FD + + Sbjct: 469 TQLTGLKDSDLKDA-QDEKTVLEEFVNFIQKDD-VLVAHNGIDFDFIWINTKLDKYKLKP 526 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH 175 +LD +R Y + L++L+L G E+ AH Sbjct: 527 LDNP---------MLDSLRLAYQLY-----------QFKRYTLENLSLKLGYEYDKTLAH 566 Query: 176 DAKADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 A D + ++ + K + L D ++ +L + +++ Sbjct: 567 RANYDTELLAKCLMIMLSQVYAKNWRSLLDLNDQEKLLNDLSEKSLK 613 >gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] Length = 236 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 26/199 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G R + + + + F+ + + +A+ I GIT Sbjct: 8 IVLDTETTGLVPEEGHRIIEIGALEM-VNRRLTGNHLHFY--INPERSIERDAIEIHGIT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + F I +N FD + + + + Sbjct: 65 DSFLIDKPL-FKDIATELISFLKGAELII---HNAPFDVGFLNHELKLTGQS--FKTLTH 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + L L +++ N H A D Sbjct: 119 YCQVLDTLTIARQKHPGQHN--------------NLDALCRRYHVDNSNRDYHGALLDAE 164 Query: 183 ATLALVWLIREKKPKLFEY 201 + L+ + LFE Sbjct: 165 LLAQVYLLMTGGQTVLFEQ 183 >gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] Length = 247 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 64/213 (30%), Gaps = 18/213 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DVA DR A V + + V EA I G+T + Sbjct: 21 FDTETTGVDVANDRIVT-AAVVLRIPGVSTD---VRTWLVDPGVEIPAEAAAIHGVTTEH 76 Query: 68 ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A GV A I + + N FD R+ G Sbjct: 77 ARAHGVAPAVALEEIAAELAAHLREGVPVVAYNAAFDLSLLDAELARHGL--ATLPERLG 134 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYAT 184 + +LD + +L DL G+ + H A DV AT Sbjct: 135 RAVTPVLDPLVLDR---------WQDRYRRGKRRLGDLVTHYGVLTTEDLHAADVDVLAT 185 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 L ++ + P+L + + Q+ Sbjct: 186 LDVLDALVRTFPELGALGLEELHHAQVGAHDTW 218 >gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320] gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320] Length = 252 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 55/209 (26%), Gaps = 30/209 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F + L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPERLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + AE + + I +N FD + F + D Sbjct: 66 HGISDEFLEDCP-SFAEIADEFLAYIRGAELII---HNASFDIGFMDYEFQKLNRDIPLT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCQITDSLAMARELFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRN 207 D + + + L + N Sbjct: 166 LDAEILADVYLAMTGGQTALAFSMEGESN 194 >gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1] gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1] Length = 215 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 23/201 (11%) Query: 4 HFVIYDYETFGR-----DV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 ++I+D E+ G D R Q A + D + E + P +P Sbjct: 2 KYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEE--NYLIYPDGFVIP 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 ++ I GIT ++A +G E + + ++ +N+ FD + + R Sbjct: 60 S-SSMEIHGITNERAREEGKPVLEVLSVFSESIKQAD--VLVGHNVSFDRSIVTSEYSRA 116 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++ + +V + G +WPS + + Sbjct: 117 KLNAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELH--------QFLFEEPFEH 168 Query: 174 AHDAKADVYATLALVWLIREK 194 AHDA ADV A + ++ + Sbjct: 169 AHDASADVRACMRCYLELKNR 189 >gi|28898498|ref|NP_798103.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|260879545|ref|ZP_05891900.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260894980|ref|ZP_05903476.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|28806716|dbj|BAC59987.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308086038|gb|EFO35733.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308093371|gb|EFO43066.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] Length = 248 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 58 FVSVDFETTGLNAEDDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 112 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + I + ++ + R F+ + + Sbjct: 113 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 159 Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178 ++ ++D + YA W S +L G+ H A Sbjct: 160 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 219 Query: 179 ADVYATLALVWLIREKK 195 D AT L + Sbjct: 220 TDALATAELFQAQLQYH 236 >gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae 670-6B] gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 670-6B] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] Length = 896 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 27/197 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFF--CKPADDYLPDPEA 57 + V++D ET G +V D Q A V++ + + + E E+F +P L D E Sbjct: 511 QDTLVVFDTETTGLNVLEDDIVQIAAVKI-AKGKVLENERFEIFIDTKRPIPAMLGDIEN 569 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 I ++ + + + +F + ++ +N +D N R Sbjct: 570 PLI-----EEIKKH--TLHTPAEALARFMEYIDGAMLVGHNATYDYQILYNNLLRYL--P 620 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +S D L + R ++KL++L +E N H A Sbjct: 621 QYTFLQKHSSYIDTLKLTRL-------------LQPSLKNYKLKNLLQEFQLEGQNTHLA 667 Query: 178 KADVYATLALVWLIREK 194 ADV+AT+ LV ++ Sbjct: 668 DADVHATVGLVHFCYQQ 684 >gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum JL354] Length = 240 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D R + V + + E+ ++ + EA I G++ Sbjct: 11 IIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYY---NPERDMPAEAEAIHGLS 67 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q F+ + +F ++ +N FD + + + Sbjct: 68 AQFLADKPR----FADAVDEFLDFVRDDMLVAHNAGFDFAFLNAELELCTREPICLTRK- 122 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L++ R L L G++ H H A D Sbjct: 123 ----IDTLEMARRKNPG--------------GKHSLDALCSRYGVDRSHRVFHGALLDAE 164 Query: 183 ATLALV 188 + Sbjct: 165 LLAQVY 170 >gi|149375575|ref|ZP_01893345.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola DG893] gi|149360280|gb|EDM48734.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola DG893] Length = 240 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D V ++ +V I GIT Sbjct: 50 FVAVDFETTGLDPDKHSIVSIGVVPFTLGRVQLG--GSRHWLVKPQLPLHQTSVTIHGIT 107 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + I + + + + + + + +R + Sbjct: 108 HTDIDKAP-DLDDVLDEILKSLA--GRIPVVHYRNIERPFLNMALKWRIGEEI------- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGIEHVNAHDAKADV 181 R+ ++D M P+ + + S +L D L G+ H H+A D Sbjct: 158 ---RFPVMDTMAIEAYLHPNRKRSWWQKLKGQQPISIRLADSRLRYGLPHYPPHNALVDA 214 Query: 182 YATLALVWLIREKK 195 A+ L+ + Sbjct: 215 LASAELLMAQVQHH 228 >gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] Length = 926 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI Q + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL GI+H++ H A +D Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I K L + + + Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186 >gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974] Length = 831 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 21 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 76 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 125 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 126 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 171 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 172 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 226 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 227 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 281 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 282 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 339 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 340 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 396 >gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210] Length = 348 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] Length = 926 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI Q + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL GI+H++ H A +D Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I K L + + + Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186 >gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC 13177] Length = 349 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215] Length = 346 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54] gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae G54] gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141] gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] Length = 249 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 12/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + D V + + ++ + KP D ++V I GIT Sbjct: 59 FVALDFETTGLNANKDDIISVGLVPFNINRIFCKQSQHWVVKPK--AKLDEDSVIIHGIT 116 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + ++ + + + + + Sbjct: 117 HSDVQTAP----DIRRILEAVLDSLAGKVVVVHYKAIERQFMDKALRVRLNEGIQ----- 167 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + I G + S +L + G+ H A D AT Sbjct: 168 -FPVVDTLALESHIQTQQYSGFLARLKGKKPGSVRLGKCRIRYGLPAYQPHHALTDALAT 226 Query: 185 LALVWLIREKK 195 L+ Sbjct: 227 AELLQAQIAYH 237 >gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R] gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R] gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R] Length = 186 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G Q A + V+ E E+ +C P D EA+ IT Sbjct: 2 KILYLDTETTGL-TYRSTIIQLAAI-VEIDGEIKETIN-LYCAPFPDSDISEEALSITKF 58 Query: 64 TPQKALRDGVV------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T ++ + + + ++ + I+ +N++FD RN YR Sbjct: 59 TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 S+ + + +D L + + R + KL+ L A I NAH+A Sbjct: 119 IA-SYIDFKNEFDTLAFTKCLKIL--------GRLPQTENNKLETLCQAFQIPLENAHNA 169 Query: 178 KADVYATLALVWLIREK 194 AD A L ++ K Sbjct: 170 LADTIAAKDLYHYLQNK 186 >gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112] Length = 343 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14] Length = 323 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98] Length = 334 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|254228134|ref|ZP_04921563.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262393911|ref|YP_003285765.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151939207|gb|EDN58036.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262337505|gb|ACY51300.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 239 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + V ++I K D ++V I GIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPF--NLKRIFLRNSRHWKVRPQRALDEDSVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + + II + R + + + + + Sbjct: 107 HSELIDAP----DLGDILSELLPCLSGKIIVVHYRRIEREFLDKALKSRLGEGIEFPVID 162 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + R+ + + P S +L G+ H A D AT Sbjct: 163 TLHLEETIQQKRSGSLWERLKGKKPE------SVRLAQSRRRYGLPDYTPHHALTDAIAT 216 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 217 AELLQAQIAHHYSE 230 >gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106a] gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] Length = 381 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] Length = 381 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 324 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 50/185 (27%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A ++D + + P P V+I G+T Sbjct: 22 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTL---VNPQRDPGP--VWIHGLT 75 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +E + + Q + ++ +N FD + R Sbjct: 76 SDTLADAPL-FSEIADELAQHL---DGRVLVAHNAVFDWSMLAREYARAG---------- 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + KL+ LA G+ AH A D Sbjct: 122 ---------SAAPVRQRLCTIALSKELGLPLPNHKLESLAAHYGVVQERAHHALDDARVL 172 Query: 185 LALVW 189 Sbjct: 173 AETFR 177 >gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894] Length = 350 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9] Length = 352 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|33240227|ref|NP_875169.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237754|gb|AAP99821.1| DNA polymerase III epsilon subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 236 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D+ + + + I + F A++ A I Sbjct: 12 ETLLIVDTETTGLDPEKDQCIEVGAILFHIEKRSILAQNSFLIPAANNP-----AEAINK 66 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+P R E + + + ++ +N FD + Sbjct: 67 ISPD-LTRFAQPWEEGVKYFLALVDIAD--VLIAHNAEFDRQWFG--------------- 108 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I WPS + ++DLALA + +AH A D Sbjct: 109 ------IPPLPEISKPWVCSMEDISWPSTLNLKGRPSVRDLALAFEVPVWSAHRALTDCI 162 Query: 183 ATLALVWLIRE 193 + + + Sbjct: 163 YLVEIFRRCSD 173 >gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] Length = 381 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 668] Length = 381 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G A R + + P +TGIT Sbjct: 15 LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + F + + +N FD + R F R Sbjct: 70 DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+L +R A + L L + + H A AD Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165 Query: 185 LALVWLIR 192 + Sbjct: 166 WQFWQKLH 173 >gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 259 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N F Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 D L + R + + L L G+++ H A Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. actinidiae str. M302091] Length = 259 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N F Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 D L + R + + L L G+++ H A Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato Max13] gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato K40] gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] Length = 259 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N F Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 D L + R + + L L G+++ H A Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato str. DC3000] gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 9 IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 62 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N F Sbjct: 63 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 118 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 D L + R + + L L G+++ H A Sbjct: 119 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 163 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 164 DSEILADVYLAMTGGQTS 181 >gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v] Length = 243 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] Length = 237 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 28/201 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M ++ D ET G D R + V V+R+ + F + EA+ Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRL----TGNNFHVYINPQRSIEEEAI 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + + + ++ + ++ +N + N + Sbjct: 57 DVHGITNEFLRDKPL-YRDIAQEFFDYIK--GAELVIHNAPFDVGHMD------NEFALL 107 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 + N + +LD ++ P L L I++ H Sbjct: 108 NQGFPNTHDYCQVLDTLKMARDLHPGQKN-----------NLDALCRRYDIDNAKRTLHG 156 Query: 177 AKADVYATLALVWLIREKKPK 197 A D + + + K Sbjct: 157 ALLDSEILADVYLAMTGGQTK 177 >gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC 11170] gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC 11170] Length = 230 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D A DR + + + S + PEA + G++ Sbjct: 4 IVLDTETTGLDPATGDRLVEIGCI---ELINHMPSGNDLHLYVNPERDMPPEAFRVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + +F + + +N FD + R S Sbjct: 61 EAFLADKPL----FAEVVDEFLAFIGEDRLIIHNAAFDMKFLNAELARLKRPPLPMSRA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 LD +R A P L L G++ + H A D Sbjct: 116 -------LDTLRMAQARFPGAQA-----------SLDALCRRFGVDTSSRTKHGALIDCV 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|120608729|ref|YP_968407.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] gi|120587193|gb|ABM30633.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] Length = 221 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 9/120 (7%) Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D+ET G + R + A V + + ++ + P + Sbjct: 1 MPSRIAVIDFETTGMTPSQGARATEVAIVLM-EEGRPVDRFQSLM---RTGAWLPPFIIQ 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGITP E+ R +F + +N FD + R + Sbjct: 57 LTGITPAMLDTAPPAES-VMREAARFV---GDAPMVAHNASFDSRFWAAELARADLPAPH 112 >gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 238 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 18/199 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D+ DR A VR++ + +A I GI + Sbjct: 12 FDLETTGTDIETDRIVTAAVVRLEPDGAVSAE---RTWLLDPGVVIPEQAAAIHGIPTEH 68 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A GV I + + T ++ N R+D R +S S Sbjct: 69 ARAHGVPAPRAIEEITRAVAEVLRAGTPLVVMNA-RYDLSLLDRECRRYGLESL--SERL 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G ++D + L L G+ AHDA+AD A Sbjct: 126 GAVPSPVVDPLVIDKHV---------DQYRKGKRALHALCAYYGVSLDEAHDARADAVAA 176 Query: 185 LALVWLIREKKPKLFEYLY 203 +V + EK + Sbjct: 177 ARVVRRMGEKHRHVGTMSL 195 >gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] Length = 816 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178 >gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] Length = 380 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 32/231 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G ++ +DR + + ++++ + +V K + E+ I Sbjct: 25 LKRPLAFFDLETTGTNIGVDRIVEISVIKLNPDG----TDDVKTWKINPEMPISIESSMI 80 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + V + I F + + + GYN+ RFD F R + Sbjct: 81 HGIYEEHLIDAPV-FKTAAAEISDFIADSD--LAGYNSNRFDIPMLMEEFLRVGHP---- 133 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + + +++ G + +NAH A+AD Sbjct: 134 -----------FDIEQRHFIDVQNIFHQMEQRTLRAAYQF-----YCGKDIINAHSAEAD 177 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 AT+ ++ K + ++ +K ++ + ++ L + + Sbjct: 178 TRATMEVLLAQVAKYEGV-----EFEDKKGVKSAPVVNDVEALHKFTNLNN 223 >gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] Length = 228 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 57/220 (25%), Gaps = 29/220 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + ++ + + EA + G+ Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQY---INPERGMPDEAFQVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + F I +N FD + W+ Sbjct: 61 DDFLRDKPK-FAQIGQDFLDFIGDSKLII---HNAAFDIKFLNAELKWMGLPQIPWAQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L I++ + H A D Sbjct: 116 ----LDTLAIARKRFPGSPA--------------SLDALCRRFNIDNTSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + + + F + K + P Sbjct: 158 ILAEVYLELIGGRQPDFGLSNQPQRKEGDTSVDWTPKPRP 197 >gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus bromii L2-63] Length = 296 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 89/329 (27%), Gaps = 46/329 (13%) Query: 4 HFVIYDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 +VI D E G ++ + V++D + ++ + P + Sbjct: 2 SYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTML-VAPKIGKKLCSKVK 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T IT ++ +GV F +++ R Sbjct: 61 QLTKITNEELKDEGVSFIRAISLFSDFLGDGVLMTWSDSDLHALIENYSYYTGRTRLPFL 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHD 176 + + D LD+ D + L A G++ + H Sbjct: 121 SRYCNLQSYCEDCLDL-----------------HDSSCQLGLGACAEMAGVDFSEDDQHR 163 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 A ADVY TL + K P K+ + + + V+ + Sbjct: 164 ALADVYLTLECMKAFYGKYPLKPYI------KDAVCDEFYDRLLFKNHFVTDINS----- 212 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 P SV+ + + L +L + FT+ K V Sbjct: 213 ----------PDVDKSVMFFDCEDCGKPLVQLSKWRLHNKSFTAEFSCKYCRKKFNGRVS 262 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCL 325 + + + E E+ ++ Sbjct: 263 FKRKFDEVSVKKKLNEKVEKKPETKEQVN 291 >gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] Length = 186 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G Q A + V+ E E+ +C P D EA+ IT Sbjct: 2 KILYLDTETTGL-TYRSTIIQLAAI-VEIDGEIKETIN-LYCAPFPDSDISEEALSITKF 58 Query: 64 TPQKALRDGVV------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T ++ + + + ++ + I+ +N++FD RN YR Sbjct: 59 TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 S+ + + +D L + + + + KL+ L A I NAH+A Sbjct: 119 IA-SYIDFKNEFDTLAFTKCLKIL--------GKLPQTENNKLETLCQAFQIPLENAHNA 169 Query: 178 KADVYATLALVWLIREK 194 AD A L ++ K Sbjct: 170 LADTIAAKDLYHYLQNK 186 >gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 196 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 24/193 (12%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ D ET G V + + V++ E ++ + +TGI Sbjct: 22 YIVIDTETTGLSVRKGAKLIEIGAVKIRND-ELVDEFDQL---INPFEHVPSRITGLTGI 77 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 L V E ++ S +T ++ +N FD + N + + Sbjct: 78 DDGMLLGKPDV-REVMDEFARWCS--DTAVVMAHNASFDMSFLDNAVQLAYSERD----- 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R + F S K+ L + I + H A +D Sbjct: 130 -----------ARFAHHFVDTLDLSRRLHPEKRSHKVSTLIVDYHIADMEEHRALSDARQ 178 Query: 184 TLALVWLIREKKP 196 L +R++ Sbjct: 179 EWMLYRAMRDEAE 191 >gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 71/266 (26%), Gaps = 50/266 (18%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G R + A V V + E V+ PEA + IT Sbjct: 8 FVVVDTETTGLPPE-GRVVELALVEV---GLECEPQIVYSALVDPGCPIPPEASAVHHIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ ++ + I+ +N FD R W Sbjct: 64 DRDVAGKPR-LSQVWPKVLGYI---GDAILVAHNAEFD---------RGMLPETGRPW-- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVY 182 + R D A Q L GI E H A D Sbjct: 109 -------ICSKRLAQHLWRD----------APKHSNQVLRYWLGIDVEVGQPHRALGDAI 151 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T + + + + + +LI +P+ + FG + P Sbjct: 152 VTAHVF-------QRELRAYLEAGYPDDVDELIAFAE-SPIEVQTMPFGKHKGMPLKEVP 203 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDL 268 + Y D + + + Sbjct: 204 L----DYLDWALRNLQDLSPDLRWSM 225 >gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509] Length = 243 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] Length = 232 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 26/199 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G R + + + + F+ + + +A+ I GIT Sbjct: 4 IVLDTETTGLVPEEGHRIIEIGALEM-VNRRLTGNHLHFY--INPERSIERDAIEIHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + F I +N FD + + + + Sbjct: 61 DSFLIDKPL-FKDIATELISFLKGAELII---HNAPFDVGFLNHELKLTGQS--FKTLTH 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + L L +++ N H A D Sbjct: 115 YCQVLDTLTIARQKHPGQHN--------------NLDALCRRYHVDNSNRDYHGALLDAE 160 Query: 183 ATLALVWLIREKKPKLFEY 201 + L+ + LFE Sbjct: 161 LLAQVYLLMTGGQTVLFEQ 179 >gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 897 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G + D Q + R + I++ + P +T Sbjct: 3 MATYAVVDLETTGNQLDFDDIIQIG-ITFVRNIQIIDTYHS---MIRTNLEIPPFIQALT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + + ++ I+ CI +N+ FD + + F Sbjct: 59 SIEENMLQQAPY-FNQVAQGIYDNMKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L++ + S++L +LA A+GI NAH A D Sbjct: 109 QYRPKRVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 T L+ L EK KL Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178 >gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] Length = 231 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + ++ + + F + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCVEI---YNRMPTGQAFHRYINPERDMPAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F++ + +F + +N FD + R + Sbjct: 61 AEFLADKPL----FAQVVDEFLDFIGDAPLVIHNASFDAGFLNAELARLSRAAIPRERL- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + S +L DL I++ H A D Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] Length = 236 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 27/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D ET G + + R + V VDR+ + P + D A+ + GI Sbjct: 4 VVLDTETTGLEPSQGHRIIEIGCVELVDRKL--TGRHYHQYINPKRE--IDTGAMEVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + ++ ++ F + I +N FD + + F S Sbjct: 60 TNEFLADKPL-FSQVAQEFLDFVTGAELII---HNAPFDIGFINSEFKLLDSKSPGTMES 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 D L + R + + L L +++ H A D Sbjct: 116 Y-CGVVDTLVMARQKHPGQRN--------------SLDALCSRYEVDNSQRDLHGALLDS 160 Query: 182 YATLALVWLIREKKPK 197 + L+ + K Sbjct: 161 EILADVYLLMTGGQTK 176 >gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001] gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 298 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 38/186 (20%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFITG 62 D ET G D D + A + + +S + PE ITG Sbjct: 47 VDVETTGLDPQRDEIIELAMTPFNYGLDGTVFSVGDSFQGLR---QPSEPITPEITAITG 103 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + AE ++ F+ P + +I +N + R Sbjct: 104 ITNEMVAGQVIDPAEVAK-----FAAPASLVIAHNAAFDRRFLERFSD------------ 146 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + ++ Q +G KL LA A G + H A D Sbjct: 147 ------------VFSTKPWACSLSQIDWAAEGFEGAKLAYLAQAAGF-FYDRHRAMHDCL 193 Query: 183 ATLALV 188 AT+ L+ Sbjct: 194 ATVELL 199 >gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134] gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134] Length = 229 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 20/201 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D ET G D DR GV V + T F K +P++ I GI Sbjct: 46 FVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQD---FYNPDSAQIHGI- 101 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ I Q T I+ +++ FD R + + Sbjct: 102 ---LKQGNYLKVNEKEAIAQCLDFIGTDILVGHHVGFDVAVVNQSLKRAGLGRLKNRQLD 158 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +R + L +LA A I + H A D T Sbjct: 159 TE-------------ILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLIT 205 Query: 185 LALVWLIREKKPKLFEYLYDY 205 I K E + Sbjct: 206 ALAFIKIVHKLNSDGEMKLKH 226 >gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520] Length = 246 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + GV V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGGVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] Length = 232 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 51/196 (26%), Gaps = 27/196 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V D ET G D AL R + A V V + F D A+ + G+ Sbjct: 3 YVFLDTETTGLDPALGHRIVEIAAVEV-CNRRLTDRH--FHRYLNPGRESDEGALRVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + V + +F + I +N FD + Sbjct: 60 TREFLRDKPV-FQDVCSEFLEFIADAE---IFIHNAPFDVGFINRELD------------ 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 + M+ D + L L I+ H H A D Sbjct: 104 -----LIRFESMQNHCLQIIDTLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDA 158 Query: 182 YATLALVWLIREKKPK 197 + + + Sbjct: 159 ELLAEVYLAMTRGQES 174 >gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] Length = 253 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 31/204 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 11 IVLDTETTGMNQFGAHYEGHCIIEIGAV---EMINRRLTGNNFHIYIKPDRPVDPDAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E +++ ++ I +N FD + F + Sbjct: 68 HGITDEMLADKP-TFNEIAQQFIEYIQGAELLI---HNASFDIGFMDYEFSKLNIGLNTS 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R +Y L L GI++ H A Sbjct: 124 E---ICLITDTLQMARQMYPG--------------KRNSLDALCDRLGIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + LF+ Sbjct: 167 LDAEILADVYLTMTGGQTSLFDES 190 >gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 242 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + + R + V V + D EA+ Sbjct: 11 IILDTETTGMNQSSGPIYLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQPIDEEAIA 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + E ++ +F + I +N FD + + F Sbjct: 68 VHGITNEFVADKPKFH-EIAQSFIEFI---DGAEIVAHNANFDVSFMDHEFSML------ 117 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 G D+ ++ D + L L GI++ + H A Sbjct: 118 --QPRGPKTADICQIL--------DSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + L+ + K Sbjct: 168 LLDAEILADVYLLMTGGQTKF 188 >gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004] gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus bovienii SS-2004] Length = 249 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 30/204 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V + KP + L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGRHFHLYIKP--ERLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + +F I +N FD + F + D Sbjct: 66 HGISDEFLQDKP-TFADIADEFIEFIRGAELII---HNATFDIGFMDYEFRKLNRDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R ++ L L I++ H A Sbjct: 122 --ADFCTITDSLVLARQLFPG--------------KRNNLNALCDRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + L + Sbjct: 166 LDAEILSDVYLTMTGGQTSLTFSM 189 >gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH] gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH] Length = 293 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 18/218 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + DR Q + + ++ +IE KP EA+ + I Sbjct: 2 KIVILDTETTG-NKEEDRIIQLSYLVLNENL-EIEEIHDELVKPP--LPISFEAMAVHHI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +++ S + + + P ++ +N FD + + +F+ Sbjct: 58 TNEMVEDKPLIKHTESYKRLKELNSPENLLVIHNAK-FDLDMLKKEGFNSFFKLIDTFRV 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + ++ K +D+ I+ NAHDA DV Sbjct: 117 LKHLIPEGKFSLQYNRYALGLY------------KKEKDICEKYNIQI-NAHDALGDVIV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 L + K E L + K L Sbjct: 164 LGLLFEYLVTNFEKNVEELVELTTKPVLHDKFYQGKYK 201 >gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] Length = 816 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] Length = 252 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 52/198 (26%), Gaps = 30/198 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F + L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPERLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + AE + + I +N FD + F + D Sbjct: 66 HGISDEFLEDCP-SFAEIADEFLAYIRGAELII---HNASFDIGFMDYEFQKLNRDIPLT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCQITDSLAMARELFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKP 196 D + + + Sbjct: 166 LDAEILADVYLAMTGGQT 183 >gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU121] Length = 902 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D Q V + + I + D P +T I Sbjct: 5 TYAVVDLETTGNQLDYDDIIQIGITFVRQN-KIIGTYHS---MIRTDLDIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E ++ I+Q C+ +N+ FD + + F Sbjct: 61 EETMLEQAPY-FKEIAQDIYQQLQD---CVFVAHNVAFDLNFIKKAFKNC---------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + S++L +LA A+ I NAH A D Sbjct: 107 ---------NIKYRPKRVMDTLELFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ EK +L Sbjct: 158 TAHLMIKAFEKFEQLPLDTLK 178 >gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY] gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY] Length = 237 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ ++ D ET G DR + V V+R+ + + +A+ Sbjct: 1 MSRQ-IVLDTETTGLSAEGGDRIIELGCVELVNRKL----TGNNLHLYLNPERDSHEDAL 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GI+ + F+ R+ + +N FD + Sbjct: 56 KVHGISNEFLRDKPK----FAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPL 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 D L + + ++ L L G+++ + H Sbjct: 112 SAHVGG---VIDTLAMAKEMFPG--------------KRNSLDSLCDRLGVDNSSRTLHG 154 Query: 177 AKADVYATLALVWLIREKKP 196 A D + + + Sbjct: 155 ALLDAELLADVYINMTRGQD 174 >gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803] gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803] Length = 223 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 22/205 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63 F+++D ET G + DR VR++ +I ++ EVF + +PE V I GI Sbjct: 39 FIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKK----FNPETVKIHGI 94 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E E ++ + ++ ++ FD RN Sbjct: 95 IQNEKFEK-LSELEALKKFLSYIQNS---VLVAHHAGFDMKMINKALSRNGLP------- 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + + + D + L ++A A I+ ++ H A D Y Sbjct: 144 ------KLKNKVLDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYI 197 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208 T + + + K + K Sbjct: 198 TALIFMKLLSRLKKNKDSTLKDIYK 222 >gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 237 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ ++ D ET G DR + V V+R+ + + +A+ Sbjct: 1 MSRQ-IVLDTETTGLSAEGGDRIIELGCVELVNRKL----TGNNLHLYLNPERDSHEDAL 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GI+ + F+ R+ + +N FD + Sbjct: 56 KVHGISNEFLRDKPK----FAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPL 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 D L + + ++ L L G+++ + H Sbjct: 112 SAHVGG---VIDTLAMAKEMFPG--------------KRNSLDSLCDRLGVDNSSRTLHG 154 Query: 177 AKADVYATLALVWLIREKKP 196 A D + + + Sbjct: 155 ALLDAELLADVYINMTRGQD 174 >gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 240 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 45/163 (27%), Gaps = 16/163 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A + V R E E P+AV + GI+ ++ Sbjct: 11 FDLETTGTDPRTARIVTAAVIEV-RDGEPAGRREWLA---DPGVPIPPDAVAVHGISTER 66 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G + I + + + N FD R S Sbjct: 67 AAAEGQPADRVADAIAEALTGYWRAGVPVVAYNAAFDLTLLSAELRRYGLPSLA------ 120 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 D L P I + L+ + G Sbjct: 121 ----DRLGGAEPGPVVDPYTIDRWADRYRRGKRTLEAVCTEYG 159 >gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] Length = 816 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVENG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ +REK +L + L +L ++ D + + + ++ Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302 +K + L D + L E + + + ++ Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266 Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362 L+ + + + E +L T + + ++ Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324 Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ + L F L E+ YR ++F Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381 >gi|153832837|ref|ZP_01985504.1| gp41 [Vibrio harveyi HY01] gi|148870971|gb|EDL69861.1| gp41 [Vibrio harveyi HY01] Length = 207 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 16/214 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + +I D ET G +F + D + +A I Sbjct: 6 TENAIIIDTETTGLGSDA-EIVEFTAICADSGKVIVNEL------VKPTCSIPADATAIH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + FS + II YN+ FD ++ +Y S Sbjct: 59 GITNEDVKDAPDFHLVFSNHFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 115 Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178 + ++ + M F W + L + ++ + AH A Sbjct: 116 VHDLFFKFCIPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRAL 172 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 AD T L+ + + D K L Sbjct: 173 ADCEMTRRLIHAVNSQIENQNNQNCDSVTKPSLE 206 >gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus] Length = 234 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 56/189 (29%), Gaps = 20/189 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D+ET G + +DR V + ++ S E+V + I P Sbjct: 49 LVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNS--ARHVFINHAIDICHESVKVHHIRP 106 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + G+ E ++ + I+ + + + + + N Sbjct: 107 ETLHVSGISEQAAFTQLLDVIA---GKILVAHGCIMEQRFLEQ--------YIKMKYQNL 155 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 LD ++ + + ++L + + AH+A D AT Sbjct: 156 KLPLIWLDTLKIEQYRT-------QLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATA 208 Query: 186 ALVWLIREK 194 L Sbjct: 209 ELYLAQINC 217 >gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 236 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 32/189 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G D DR + V E I + + A + Sbjct: 5 IVLDTETTGTDAKNGDRLIEIGCV------ELINHVQTGAYYHQLINPQRPVSEGAFAVH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ V F+ + F + + +N FD + F + Sbjct: 59 GISDAMLADKPV----FADVVDAFVAFCGDARLVIHNAPFDVGFLNMEFAKLG--PAAPP 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + + + L L G++ H A Sbjct: 113 LIVLEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALL 158 Query: 180 DVYATLALV 188 D + Sbjct: 159 DAQILAEVY 167 >gi|311694884|gb|ADP97757.1| exonuclease RNase T and DNA polymerase III [marine bacterium HP15] Length = 190 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 25/195 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ VI D ET G D + + + +T +P A + G Sbjct: 17 DNAVIIDTETTGL-TDTDEIVEISVI------NCHGTTL-LDTLIRPSSEINPAAQAVHG 68 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + ++ YN+ ++ R + Sbjct: 69 ITLAETADAP-TFDQVLPDLLRVIQ--GKTVVMYNSSYDARLIQQSAMKRGCRAPTLYPH 125 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADV 181 A+ ++ QW + L A G+ NAH A D Sbjct: 126 -------------CAMKTYAKFYGQWDDYRESWKWQSLDKAARQCGVTVDGNAHRALTDC 172 Query: 182 YATLALVWLIREKKP 196 + TL ++ + P Sbjct: 173 FTTLGVIKAMAAYNP 187 >gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] Length = 229 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + E+ + + EA + G+ Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQY---INPERGMPEEAFQVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + F I +N FD + W Sbjct: 61 DDFLRDKPK-FAQIGKSFLDFIGTSKLII---HNAAFDIKFLNAELRWMGLPQIPWEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L++ R + SP L L GI++ + H A D Sbjct: 116 ----LDTLEIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] Length = 240 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 71/267 (26%), Gaps = 52/267 (19%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63 FV+ D ET G R + A V V + ++ + PEA + I Sbjct: 8 FVVVDTETTGLPPE-GRVVELALVEVGLER----EPQIVYSALVDPGCPIPPEASAVHHI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + S+ + ++ +N FD R W Sbjct: 63 TDRDVAGKPR----MSQVWPKVLGYIGDAVLVAHNAEFD---------RGMLPETGRPW- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADV 181 L R + PD + ++ L GI E H A D Sbjct: 109 --------LCSKRLVQHLWPDAPKHANQV----------LRYWLGIDVEVGQPHRALGDA 150 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T + + + + + +L +P+ + FG + Sbjct: 151 LVTAHVF-------QRELRAYLEAGYPDDVDELTAFAE-SPIEVQTMPFGKHKGMPLKEV 202 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDL 268 P+ Y D + + + Sbjct: 203 PL----DYLDWALRNLQDLSPDLRWSM 225 >gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46] gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 223 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 19/188 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D D A +R+ +I ++E D PEA+ + + Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGD--RILTSESLRATVRSDRPSSPEAIKVHRLLN 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + +F I+GY +++ + Sbjct: 90 AEIREA-EPLDAVLPALLRFI--GGRPIVGYYTEFDVRMLDKSVRRQFGI-------RLP 139 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N R D+ + A D + G+ + HDA D T Sbjct: 140 NPRIDVSSLYHAAKYRDA-------PDYVKIDLSFARILEDLGLPALPQHDAFNDALMTA 192 Query: 186 ALVWLIRE 193 + +R+ Sbjct: 193 MIYLQLRD 200 >gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] Length = 252 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 28/194 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D L R + V ++R++ + F + + EA+ + GI Sbjct: 21 IVLDTETTGIDPKLGHRIIEIGCVELINRRF----TGNNFHVYINPERDIEDEAIDVHGI 76 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q +FF + +N FD + + F R R + Sbjct: 77 TNQFLRDKPKFHHIA----QEFFDYIQGAELVIHNAAFDVGFMDSEFQR-----LRTGYP 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 +LD ++ P L L I++ H A D Sbjct: 128 KTAQFCQVLDTLKMARELHPGQKN-----------NLDALCRRYNIDNGKRTMHGALLDS 176 Query: 182 YATLALVWLIREKK 195 + + + Sbjct: 177 EILSDVYLAMTGGQ 190 >gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47901] Length = 816 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178 >gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 259 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N F Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALIGAQDKADI 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 D L + R + + L L G+++ H A Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 DSEILADVYLAMTGGQTS 183 >gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] Length = 816 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178 >gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] Length = 830 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 33/212 (15%) Query: 1 MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M N +V+ D E + + Q V + + I+ D Sbjct: 1 MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGDIIDQYAT---DVNPHEPLDSH 55 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TG+T Q+ ++ + +I + I +N++FD + Sbjct: 56 IKELTGLTDQRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ R D +++ + +Y + L L GIE +AH Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 A +D AT L+ +R+K +L + L + K Sbjct: 152 ALSDAQATAELLLYMRQKLFELPKGLLESLLK 183 >gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125] gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125] Length = 265 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G DR V+V E E F+ D +P + +TG++ Sbjct: 81 VVFDLETSGFYPDQGDRILSIGAVKV-VGLTIQEE-ETFYSVVHTDTVPPENILELTGLS 138 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + F ++ ++ ++ + S + Sbjct: 139 VEELEAAP-PLTSVLESFYAFIR--HSTLVAHHASHEKAFMSHVTWQTMKLPF------- 188 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + + + L D I N H A D T Sbjct: 189 EHRVIDTSFLTKIVAP--------------QELVTLDDCCAYYSIPVQNRHHAFEDSLMT 234 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + Sbjct: 235 AKLWIAAIAAAREAGFETLR 254 >gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104] Length = 816 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178 >gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b] gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b] Length = 243 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 30/211 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHIYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + ++ + + + +N FD + F D + Sbjct: 66 HGIADEFLADKP-SFSDIADEFLDYIRGAE---LVIHNASFDIGFMDYEFAMLKRDIGKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D + A + L L I++ H A Sbjct: 122 ---------DTFCQVTDSLAMARKMF-------PGKRNSLDALCSRLEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 D + + + L + ++ Sbjct: 166 LDAEILAEVFLTLTGGQTSLAFSMESEQSNQ 196 >gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Taiwan19F-14] gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Taiwan19F-14] gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] Length = 816 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178 >gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4] gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae TIGR4] gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae TIGR4] gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] Length = 816 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +R+K +L + L + Sbjct: 157 ATAELLLFLRKKMTQLPKGLLE 178 >gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 314 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + + P P V+I G+T Sbjct: 10 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTTVNPERDPGP--VWIHGLT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ +N FD + R ++ Sbjct: 64 SDVLEGAPL-FKDVAAEFAARLE---GRVLVAHNAVFDWQMIAREYARARGEAP------ 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + KL+ LA G+ AH A D Sbjct: 114 -------------VRQRLCTIALSKELKLPLPNHKLESLAAHFGVVQRRAHHALDDARVL 160 Query: 185 LALVW 189 Sbjct: 161 AEAFR 165 >gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200] gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] Length = 816 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178 >gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 270 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 10/166 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + I D ET G ++ DR + + + E K E I Sbjct: 8 LKKPLAIIDLETTGVNITRDRIVEICIAKANLDGTV----ETRTKKVNPTIPIPLETSLI 63 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR---NFYDS 117 GI + + + +R + QF + G+N+ RFD F R N +D Sbjct: 64 HGIYDEDVANEP-TFKQLARSLAQFLE--GCDLAGFNSNRFDIPMLVEEFLRVDSNLFDI 120 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + + L++ A+ + A + L L Sbjct: 121 KNRKLIDVQRIFHLMEPRTLSAAYKFYCQKTLENAHSAEADTLATL 166 >gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 197 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 49/179 (27%), Gaps = 24/179 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + A VD Q + T V +P PE I GIT Sbjct: 25 LFLDTETTGLD-GQAEIVEIA--VVDAQGTVLLDTLVRPLRP-----IPPEVQAIHGITD 76 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + + F ++ N FD ++ W Sbjct: 77 RMVAGAPR-WPEVHAELVRLFRERPRAVV--YNAAFDRRVIAQTAQQHCLPPPTAEW--- 130 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 M A++ + +L A A GI H A D Sbjct: 131 ------HCAMLRYAAYAGERH---PVTGKYRWHRLDRAAAALGIPR-PTHRALGDALVC 179 >gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] Length = 238 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 N V+ D ET G ++ R + V + + F D P+ Sbjct: 10 NRIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEI-INRKLTGRH--FHVYLKPDREIQPD 66 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E+S +F + +N FD + F + Sbjct: 67 AIGVHGITDEFLVDKP----EYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFE--MLN 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 121 PSIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189 >gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 233 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G DR + V +++ + +A+ + GIT Sbjct: 4 IFLDTETTGLSADTGDRIIEIGCV---ELFKRKLTGNNKHFYLNPGRESHEDALRVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 EA + + + I +N FD + + Sbjct: 61 SAFLKDKPKFEA-VADELLAYVKDAEIII---HNAPFDLGFLNKELALLGRP---RFKEF 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 S D L + + ++ L L G+++ H A D Sbjct: 114 VGSVTDTLVMAKEMFPG--------------KRNSLNALCDRLGVDNSGRALHGALLDAE 159 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 160 LLADVYINLTRGQD 173 >gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium 1114] Length = 312 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 26/184 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D DR VR+ ++ + F A I GI Sbjct: 31 LDTETTGLDPGRDRIVAIGAVRL--HGRRLYPSRTFETLVRPGISIPASASAIHGIGDAM 88 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + AE R+ + + ++G++ FD R+ + SW + Sbjct: 89 VAGAPGM-AEIWPRLSPWLA--GRVVLGHHV-DFDLAMIGAAARRHGF-----SWTEPFA 139 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 LD R + A DG++ L + A +G+ H A D + Sbjct: 140 ----LDTARLVAAL-----------DGSSPVDLDEAAQRHGVTLEGRHSALGDSLIAARV 184 Query: 188 VWLI 191 + Sbjct: 185 YLRL 188 >gi|254507936|ref|ZP_05120065.1| exonuclease, RNase T and DNA polymerase III [Vibrio parahaemolyticus 16] gi|219549172|gb|EED26168.1| exonuclease, RNase T and DNA polymerase III [Vibrio parahaemolyticus 16] Length = 239 Score = 79.1 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 12/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G D D V I + + +P + ++V I GI Sbjct: 48 TFLAMDFETTGLDSEQDDIITIGTVPFTLNRVLINQAKHWTVRPRKQL--EEDSVIIHGI 105 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L + S + + + I+ + R + + + Sbjct: 106 THSDVLDAP----DLSEVFAEILAQMHGRIMVVHYQRIEREFFNRALLTRINEGIE---- 157 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + + S G+ + S +L G+ H A D A Sbjct: 158 --FPVVDTMQLETLVQQKSNGGLLNRLKGRKPASVRLSASRSRYGLPQYTPHHALTDAVA 215 Query: 184 TLALVWLIREKKPK 197 T L+ + Sbjct: 216 TAELLQAQIAYHYE 229 >gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22] gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22] Length = 247 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 24/201 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G DR QF + VD + + E+ + P EA+ + IT Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIP---IKLEAMEVHNIT 58 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P E F +R+ + S N + +NI FD + + N Sbjct: 59 PDLLENKPKAVETNFYKRLEELNSDEN--YLIAHNINFDLDMIKKEGFEN---------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + L+D +R D + +K ++ + + AHDA DV Sbjct: 107 ----SYKLIDTLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITIKAHDAIGDV 162 Query: 182 YATLALVWLIREKKPKLFEYL 202 + + K +++ L Sbjct: 163 LVMKLFLSKLVGKCREVYPSL 183 >gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM] gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 407 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 55/345 (15%), Positives = 102/345 (29%), Gaps = 38/345 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D E+ G + + A R D + ++ + +TGIT Sbjct: 2 YSVIDIESNGGAFREECIIEVAIYRYDGH-KIVDQF---ISMVNPEADISHFVQKLTGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ E ++RI + + +N+ FD R F R Y Sbjct: 58 PKMVKTAPKFH-EIAKRIIEITE---GSTLVGHNVDFDYRMLRQSFKRLGY--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + LD + S+ L L + GI H A +D AT Sbjct: 105 -HFSIETLDTIPLAKKL----------IPNEESYSLGKLVKSLGIPLAEHHRASSDARAT 153 Query: 185 LALVWLIREKKPKLF---EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL-- 239 L L L+ K + + K K+ + P F +R L Sbjct: 154 LDLFKLLMTKDKDNEIIQSHFEEANAKTYFNKIKALTQDLPAERGIVYFQDARGKVILSE 213 Query: 240 ----IAPVAWHPRYKDSVIGCNLSGDMR-VFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 I A S + ++ + +L + +L +L + L +P Sbjct: 214 VTDGIYKFAKKVFNAKSKKWQKIQNEVEQISYELVASELFAKLIMNTKGLAKTTHLPYGL 273 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339 N ++ + H + + L ++ L + Sbjct: 274 FFENDEWLVKRVRRDMPLLPMIKFKTHSQGRKVLNFIKNHEVLNN 318 >gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] Length = 237 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 30/200 (15%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ ++ D ET G DR + V V R+ + + +A+ Sbjct: 1 MSRQ-IVLDTETTGLSAEGGDRIIEIGCVELVSRKL----TGNNKHFYLNPERDSHEDAL 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GI+ + A + + ++ I +N FD + + Sbjct: 56 KVHGISNEFLRDKPK-FAAVADELLEYLQGAEVII---HNAAFDVGFLNKELELLGRPAL 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 +S D L + + +Y L L G+++ H Sbjct: 112 ---HTFVDSVTDTLAMAKELYPG--------------KRNSLDALCDRLGVDNSGRTLHG 154 Query: 177 AKADVYATLALVWLIREKKP 196 A D + + + Sbjct: 155 ALLDAELLADVYINLTRGQD 174 >gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 247 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 57/194 (29%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR +FAG+ + R+ E T + D EA + GIT Sbjct: 7 IILDTETTGLYSDRGDRILEFAGIEM-RKRRLTERTLHLY--IHPDRDIPEEAAAVHGIT 63 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A + I F I +N RFD + F R + Sbjct: 64 LDTLAEKNAPKFAAVGQEIADFLRGAELII---HNARFDVGFLDMEFERMGLPTIEE--- 117 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 G D L + R Y L L I+ H A D Sbjct: 118 LGCEVTDTLAMAREKYPGQKA--------------SLDALCGRLDIDRSKRVYHGALIDC 163 Query: 182 YATLALVWLIREKK 195 + + ++ Sbjct: 164 ELLAEVYLAMTREQ 177 >gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9301] gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9301] Length = 259 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D + + D ++ + S F ++ +A ++ G Sbjct: 36 EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----KAEYVNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + + I +N+ FD + Sbjct: 91 IS-AEVTNISQPWEDGLNFFLKLVDSSD--FIVAHNVEFDKKWFGKGR------------ 135 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I W + + DLAL+ I N H A +D + Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCF 186 Query: 183 ATLALVWLIRE 193 + Sbjct: 187 YISEVFKKCDN 197 >gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum SCRI1043] gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 60/224 (26%), Gaps = 30/224 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA I Sbjct: 9 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNI 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F + +N FD + +R + Sbjct: 66 HGISDEFLADKP-TYADVADDFLDFIRGAE---LVIHNATFDIGFMDYE-FRLLNRNIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R I+ L L I++ H A Sbjct: 121 TETF-CKITDSLFMARKIFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + + + L + + + + P Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGEAQRQNESNETIQRIVRP 209 >gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA41317] Length = 816 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178 >gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 34/212 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--------- 52 + +++ D E G + +R + A ++ +++ D Sbjct: 12 PDTYIVVDIEATGLNPETERLIEVAAIKY-INHKEVARFSELINPLRDQLPVDLLDKDKT 70 Query: 53 --PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 +TGI+ + E + R +F +I +N+RFD + Sbjct: 71 IYISDFIENLTGISNRMLHDA-RGEKDVLREYIKFI---GNDVIIGHNVRFDIRF----I 122 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 Y Y + N D +D ++ + ++L+DLA I+ Sbjct: 123 YDALLRDYGVLFQN-----DYIDTLKIARKLLHE---------DLKRYRLKDLADHYHID 168 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + +AH A D T + ++ E F + Sbjct: 169 YSHAHRAVNDCEITHDVYEMMMEDIFNNFGTI 200 >gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] Length = 236 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 29/194 (14%) Query: 8 YDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G + DR + GV + + T + P D EA I G++ + Sbjct: 6 FDTETTGLNPLDGDRLVEIGGVEL-INFIPTGRTCHLYVNPQRDM--PEEAFRIHGLSAE 62 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V A+ + F + +N FD + R + Sbjct: 63 FLSDKPV-FADVADEFLDFV---GDARLVIHNAPFDMGFINMELARCNKPKISNTQ---- 114 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184 D L + R + S L L GI++ H A D Sbjct: 115 -VLDTLKLARRKFP--------------TGSVSLDALCSRYGIDNSKRVYHGALLDAELL 159 Query: 185 LALVWLIREKKPKL 198 + + K K Sbjct: 160 AEVYLEMNGGKQKN 173 >gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] Length = 245 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 37/240 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D ET G + R + + F D +P A+ + Sbjct: 4 IVLDTETTGLEPADGHRVIEIGCYELCYRRASGR------TFHHYLNPDREVEPGAIEVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + +F I +N FD + F R Sbjct: 58 GITNEFLADKPR-FCDIATDFIEFIRDAELII---HNAPFDVGFLDYEFSRL-------- 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 R + A + + L L +++ H A Sbjct: 106 -TGSWGRLADYCQVTDTLALARERH-------PGQRNSLDALCTRYAVDNAQRSLHGALL 157 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKN-----QLRKLIDIQNMTPLVHVSGMFGASR 234 D + L+ + L + + +R+L + P+V S A Sbjct: 158 DAQLLAEVYLLMTGGQTALSLESGAGLSADLALVGGVRRLDPARPRLPVVRASSAEQAEH 217 >gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f] gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f] Length = 622 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 50/181 (27%), Gaps = 28/181 (15%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70 ET G DR A V+V E P P V I G+T + Sbjct: 2 ETSGLAADRDRILSIAVVQVGADGAVGERWTTL---LDPGCDPGP--VHIHGLTRELLAG 56 Query: 71 DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130 F+ + + S ++ +N FD + R + R Sbjct: 57 SPT----FADVVDELASRLAGRVMVAHNASFDWRFLTAEAVRAGRELP------TERRMC 106 Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWL 190 + R D F+L +A + HDA AD ++ Sbjct: 107 SCVLAR-------------RLDLPVPDFRLATIADFWAVPFERQHDALADAMVVAEVLPR 153 Query: 191 I 191 + Sbjct: 154 M 154 >gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] Length = 896 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 29/217 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAVF 59 V++D ET G DV D + A +++ + E + + K LP +P Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKI-KGGEIVGEPLDLYIKTDKPILPKLGDKDNPMYA- 572 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I +K + ++ + + +F + T I +N +D N R D+ + Sbjct: 573 ---IYHEKLSAEELITPQ--EALQRFLAYIGTRPILGHNASYDYNIIDNCLQRYCNDTLK 627 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 N +D L ++R S+KL+ L + N+H A Sbjct: 628 AH---KNPCFDSLKLIRL-------------LSPSLHSYKLESLLETFQLTGKNSHQAID 671 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 DV AT++LV L EK + + +++ I+ Sbjct: 672 DVGATVSLVRLCAEKAREKQPQQQSFLQHPKVKPFIN 708 >gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The Proofread Exonuclease Subunit Of E. Coli Dna Polymerase Iii Length = 194 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] Length = 244 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 37/199 (18%) Query: 6 VIYDYETFGR------DVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 +I D ET G + DR +FAG+ V+RQ + EA Sbjct: 9 IILDTETTGFYHSAAENP--DRLIEFAGLEMVNRQLTE----NTLHLYIHPQRDIPAEAA 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + V A+ +++I F I +N +FD + F R Sbjct: 63 AIHGITLDQLEGKPV-FAQVAQQIFDFLKGAELII---HNAKFDIGFLNAEFARVGLPPI 118 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 D+ S D L++ R Y + L L G++ H Sbjct: 119 ----DSVCSVIDTLEMARNKYPGQKN--------------NLDALCNRLGVDRSRRVLHG 160 Query: 177 AKADVYATLALVWLIREKK 195 A D + + + Sbjct: 161 ALIDCELLGGVYLAMTRNQ 179 >gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] Length = 977 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 31/186 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G + A R+ R E ++ + F L E +T IT Sbjct: 48 IVLDTETTGLSHRDSELIEIAAARL-RGREIVDRFDTF---VKPSGLIPEEITKLTSITN 103 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + +F C + +N FD R F + D Sbjct: 104 VDVAHAP-SAVDAVASLAEFV---GGCPVVAHNAAFD---------RGFIEQVPGGADVS 150 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + D L + R S KL +A G E +H A ADV A Sbjct: 151 DIWIDSLALSRIA-------------LPRLASHKLAVMAELFGCE-SVSHRANADVEALC 196 Query: 186 ALVWLI 191 + ++ Sbjct: 197 GVWRIL 202 >gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 900 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D Q V + + D P +T I Sbjct: 5 SYAVVDLETTGNQLDYDEIIQIGITFVSNN-KISGTYHS---MIRTDLDIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E ++ I++ + +N+ FD + + F D Sbjct: 61 EDTMLEQAPYFH-EIAQEIYKQLKDR---VFVAHNVDFDLNFIKKAFQNCNIDF------ 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ + Y S++L +LA A+ I NAH A D Sbjct: 111 KPKKVLDTLELFKIAY-------------PTDKSYQLSELAEAHDIPLDNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ +K +L Sbjct: 158 TALLMIKAFQKFEQLPIDTLK 178 >gi|328480154|gb|EGF49106.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus MTCC 5462] Length = 106 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 4 HFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D ET G DR QF V R + I + D +TG Sbjct: 6 TFAVVDLETTGTSVKDGDRMIQFGCALV-RHGKII---QTISQMINPDRSVPQTIQRLTG 61 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 I+P++ + E + +HQ + + +N+ FD + F Sbjct: 62 ISPERLVAAPY-FDEVAPALHQVLTK---TVFVAHNVNFDYPFLNAEF 105 >gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] Length = 830 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 33/198 (16%) Query: 1 MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M N +V+ D E + + Q V + E I+ D Sbjct: 1 MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSH 55 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TG+T Q+ ++ + +I + I +N++FD + Sbjct: 56 IKELTGLTDQRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ R D +++ + +Y + L L GIE +AH Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151 Query: 177 AKADVYATLALVWLIREK 194 A +D AT L+ +R+K Sbjct: 152 ALSDAQATAELLLYMRQK 169 >gi|261749200|ref|YP_003256885.1| DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497292|gb|ACX83742.1| putative DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 255 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 78/251 (31%), Gaps = 28/251 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D E G ++ DR + + +++ + + T + F + P++ I GI Sbjct: 9 ICFFDIEATGVNIGKDRIIEISILKIFPNGNQEDKTWLIF----PEIPIPPKSTAIHGIK 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + I + N + GYN+ RFD R Sbjct: 65 DEDVAGQ-LPFKDVAIHIFRMIE--NADLAGYNSNRFDIPILVEEMLRAGISFDIKKHKT 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + S + N + AH +KAD +AT Sbjct: 122 IDVQV-----------------IFHKMEPRTLSAAYKYYCKKN---LIKAHSSKADTFAT 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALIAPV 243 ++ EK L + + + + L D+ + + +F + + + Sbjct: 162 YEILLAQLEKYQDLKQDVKSLNQFSHQKNLADLAGFVKIDEEGNEIFNFGKYKGEKVYEI 221 Query: 244 AWHPRYKDSVI 254 I Sbjct: 222 FEKDPNYYGWI 232 >gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus DSM 2366] gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus DSM 2366] Length = 328 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G +V DR + A ++ ++ + + + A I Sbjct: 5 LKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSEL----IKTMRINPEMPIPLYASLI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GI + + + E + + F + + GYN+ RFD F R D Sbjct: 61 HGIYDEHIANEP-IFKEVATELADFIGDAD--LAGYNSNRFDIPVLLEEFLRAGVDF 114 >gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] Length = 370 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 75/207 (36%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYS---FMINPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + ++ + ++ +I + + +N+ FD + ++ YD+ Sbjct: 63 TGIHNEDVAKEKDFKF-YAPKIVKILQN---AVFVAHNVDFDLPFLNYELTQHGYDAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTSQLEIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I ++ KL + + + Sbjct: 160 AYGTAILLIKIIKQLEKLPQATLNTLS 186 >gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] Length = 1011 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 57/222 (25%), Gaps = 31/222 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D+ Q A V++ + + F +T I Sbjct: 53 IVALDTETTGLSHKNDQLTQIAAVKL-EEGSVADEFTTF---VNPSRPIPHNIEKLTNIY 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + R+ F I +N FD + Sbjct: 109 SVDVEHAPTPQTAVA-RLADFVE---LDPILAHNASFDRAFIEAAQNDTCVSDTW----- 159 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R + TS KLQDLA G E H A D A Sbjct: 160 ----IDTLALSRIAF-------------PALTSHKLQDLAYIFGCE-SVTHRANDDCTAL 201 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 + I + + + + + + + Sbjct: 202 AGVWHYILAGICDIPQQILTTLVEAHNEVNWPYRFIFSYILH 243 >gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] Length = 186 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 28/185 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D DR + A V V + KI S F + GI Sbjct: 8 FCVVDTETTGTDPFGGDRIIEIAAVPVFKG--KIFSNRAFHSLVNPHVRIPALIQKVHGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + ++ + +F ++ ++N FD + + ++ Sbjct: 66 SNEEVEEAP----DMGTVYERFRDYVKGTVLVFHNANFDLTFLDMMAKE------TRNFP 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N+ D LD+ + ++ L+ L GI H A +D Sbjct: 116 LTNAYIDTLDISQEVFG---------------RPHSLKWLCEKLGIRDKIEHRALSDALV 160 Query: 184 TLALV 188 T + Sbjct: 161 TAKVF 165 >gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56] Length = 164 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 8/105 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G + D + V D + ++ PE +TGI Sbjct: 65 VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIPPEITRLTGI 124 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 T + R + +I +N FD + Sbjct: 125 TDAMVEGQVID----MRSLSALIE--PADLIIAHNAGFDRPFCEA 163 >gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6] gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39] gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6] gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae D39] Length = 816 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178 >gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010] gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010] Length = 287 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T +I+D ET G D+ DR Q + ++ + E +F + E + + Sbjct: 5 LTRPLIIFDLETTGLDLVNDRIIQISYIKAYPDGRE-ERENIF---INPEKQIPEEVIAL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT E + + Q F+ G+N+ RFD F R + Sbjct: 61 TGITNADVAEAP-TFKEKGKELAQKFA--GCDFAGFNSNRFDVPMLAEEFLRAGVEFDFS 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +++ + R A + + +D + + Sbjct: 118 KCKLIDAQNIFHKMERRNLAAAYEFYCGRKMEDDFEAHR 156 >gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex Length = 186 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 187 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPK 197 D + + + Sbjct: 169 LDAQILAEVYLAMTGGQTS 187 >gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829] Length = 1008 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 57/222 (25%), Gaps = 31/222 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D+ Q A V++ + + F +T I Sbjct: 50 IVALDTETTGLSHKNDQLTQIAAVKL-EEGSVADEFTTF---VNPSRPIPHNIEKLTNIY 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + R+ F I +N FD + Sbjct: 106 SVDVEHAPTPQTAVA-RLADFVE---LDPILAHNASFDRAFIEAAQNDTCVSDTW----- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R + TS KLQDLA G E H A D A Sbjct: 157 ----IDTLALSRIAF-------------PALTSHKLQDLAYIFGCE-SVTHRANDDCTAL 198 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 + I + + + + + + + Sbjct: 199 AGVWHYILAGICDIPQQILTTLVEAHNEVNWPYRFIFSYILH 240 >gi|258624472|ref|ZP_05719419.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM603] gi|258583319|gb|EEW08121.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM603] Length = 233 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 54/191 (28%), Gaps = 13/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + D V + Q + + + +P + +V I GIT Sbjct: 44 LVALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPT--KPLEEGSVVIHGIT 101 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + F I+ + + + R W Sbjct: 102 HSELRHAQEPEV----VLSELFDALRGKIVVAHFRHIEREFLRQAT------LNLWDEAV 151 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ + Q S +L L G+ + H A D AT Sbjct: 152 EFPIIDTLEIEHYVQNAQRSLWQRLLSRPLN-SVRLGQSRLRYGLPAYSPHHALTDAIAT 210 Query: 185 LALVWLIREKK 195 L Sbjct: 211 AELFQAQYAHH 221 >gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] Length = 239 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 19/193 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A VR D V A I G++ + Sbjct: 11 FDTETTGLDVDRDRIVTAALVRRDAAGT-----HVRTWLLDPGVEIPEAAASIHGVSTEH 65 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A GV I + + N FD R+ + G Sbjct: 66 AKAHGVAPKAALDEIATELAGAFRAGVPVVAYNAAFDLCLLDAELRRHRLPTLPD-RLLG 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 +R + ++ + KL DL +E + H+A DV AT Sbjct: 125 AARPVIDPLVLDRAV----------DREREGKRKLVDLCGVYEVVESGDLHNADVDVVAT 174 Query: 185 LALVWLIREKKPK 197 L ++ I + P Sbjct: 175 LDVLERIVGRFPH 187 >gi|328473671|gb|EGF44506.1| hypothetical protein VP10329_13450 [Vibrio parahaemolyticus 10329] Length = 254 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 16/211 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G + +F + + EA I GIT Sbjct: 57 IILDTETTGLG-SQAEIVEFTAICAHTGKVIVNEL------VKPTCSIPAEATAIHGITD 109 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + FS + II YN+ FD ++ +Y S + Sbjct: 110 EDVKDAPDFHLVFSNHFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQSVHDL 166 Query: 126 NSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 ++ + M F W + L + ++ + AH A AD Sbjct: 167 FFKFCVPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQNVDVSDLTAHRALADCE 223 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 T L+ + + D K Sbjct: 224 MTRRLIHAVNSQIENQNNQNCDSVTKPSSED 254 >gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] Length = 830 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 33/198 (16%) Query: 1 MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M N +V+ D E + + Q V + E ++ D Sbjct: 1 MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIVDQYAT---DVNPHEPLDSH 55 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TG+T Q+ ++ + +I + + +N++FD + Sbjct: 56 IKELTGLTDQRLAAAPE-FSQVAGKIFELVKDG---VFVAHNVQFDANLLAEFLFFEG-- 109 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ R D +++ + +Y + L L GIE AH Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEQAHT 151 Query: 177 AKADVYATLALVWLIREK 194 A +D AT L+ +R+K Sbjct: 152 ALSDAQATAELLLYMRQK 169 >gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] Length = 297 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 29/199 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61 + +V+ D+ET G Q ++ + E+I+ + IT Sbjct: 124 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 179 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ + + E +FS ++ F S + +N FD + + N + + Sbjct: 180 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 234 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + KL L +++ N+HDA D Sbjct: 235 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 275 Query: 182 YATLALVWLIREKKPKLFE 200 T + I+ + K+ + Sbjct: 276 LVTNKVYQYIKHENNKIVQ 294 >gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 208 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 20/200 (10%) Query: 5 FVIYDYETFGRD-----VALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++ +D ET G + D R Q A + + + + P +P Sbjct: 16 YLFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQ 75 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I GIT +KA+ DG + + ++G+N FD + RN Sbjct: 76 -SSINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHNIY-FDIHVVTAELIRND 133 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + + N + G ++P +KL G NA Sbjct: 134 MIDEKETLEKINKICTMKKSTDFCKISGLYGYKYPKLQQLY--YKL------FGENFDNA 185 Query: 175 HDAKADVYATLALVWLIREK 194 HDA +D+ AT + ++ + Sbjct: 186 HDAGSDIEATRKCFFELKRR 205 >gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296] gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 20/176 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV R + + +D Q + E A + GIT + Sbjct: 8 FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLA---DPGVEIPAGAAAVHGITTEY 64 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A G E + + I N +D + R+ + Sbjct: 65 AREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGE------ 118 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + P + L+ LA G+ NAH + D Sbjct: 119 ---------LPPGVVLDPYVLHKHVIPRKRGKRTLEVLATEYGVSLENAHTSADDA 165 >gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured Prochlorococcus marinus clone HF10-11H7] Length = 259 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D + + D ++ + S F ++ EA ++ G Sbjct: 36 EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEYVNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + + I +N+ FD + Sbjct: 91 IS-AEVTNISQPWEDGLHFFLKLVDSSD--FIVAHNVEFDKKWFGKGR------------ 135 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I W + T + DLAL+ I N H A +D + Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCF 186 Query: 183 ATLALVWLIRE 193 + Sbjct: 187 YISEVFKKCDN 197 >gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 234 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 52/200 (26%), Gaps = 33/200 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 ++ D ET G DR + V E + + + +A+ + Sbjct: 4 IVLDTETTGLSAENGDRIIEIGCV------ELVGRKLTGNNRHFYLNPERDSHEDALKVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + A + + ++ I +N FD + D R Sbjct: 58 GISNEFLKDKPK-FAAVADELLEYLQGAEIII---HNAPFDVSFLNKELELIGRDPIRH- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 V + + +P L L +++ H A Sbjct: 113 -----------CVAKVTDSLMMAKELFPG-----KRNSLDALCDRLDVDNSGRTLHGALL 156 Query: 180 DVYATLALVWLIREKKPKLF 199 D + + + L Sbjct: 157 DAELLADVYINLTRGQNSLM 176 >gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] Length = 816 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 61/420 (14%), Positives = 128/420 (30%), Gaps = 58/420 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + + ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPKLEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 AT L+ ++EK +L + L +L ++ D + + ++ R+ + L +P Sbjct: 157 ATAELLLFLQEKMAQLPKGLL-----ERLLEMADALLYESYLLIEEIY---RNKSILSSP 208 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKC 300 + + +G + L +K + + E++ KEV L Sbjct: 209 DLVEVQG----LYFKKTGAPLEPRKLS-QDFSKNISLLNLEVREEQESFAKEVGLLLKDE 263 Query: 301 PI-LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359 P+ L+ + + + +L T + + Sbjct: 264 PVSLIQAPTGIGKTYGYLLPALSQVENRQIVLSVPTKILQNQIMEEEGKRLKEVFHI--D 321 Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408 ++ ++ + L F L E+ YR ++F Sbjct: 322 IHSLKGPHNYLKLDAFYRSLQENDENRLFRRFKMQLLIWLTETETGDLDEIGQLYRYQHF 381 >gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 7/115 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D ET G DV DR A VR++ +A I GI+ Sbjct: 8 LLAFDLETTGTDVETDRIVTAAVVRLEADGSVSAE---LTWLLDPGVAIPEQASAIHGIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 ++A G+ A I + + T ++ N R+D R D Sbjct: 65 TERAREHGLPAAAAIEEITRAVADGLRSGTPLVVMNA-RYDLSLLDRECRRYGVD 118 >gi|254228313|ref|ZP_04921740.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25] gi|262394378|ref|YP_003286232.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151939119|gb|EDN57950.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25] gi|262337972|gb|ACY51767.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 248 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 58 FVSVDFETTGLNAEEDAILTIGLVPF-----TIDRVQCSGSAHWVVNPNRELNEESVVIH 112 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + I S ++ + + + N + + Sbjct: 113 GITDSEVKNAPQLTH-ILGEILDALS---GKVVLVHYKNIERQFFNNALLNSIGEGIH-- 166 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D LD+ AI G+ + S +L + H A D Sbjct: 167 ----FPVVDTLDIEHAIQRRECSGLFNKLKGKKPGSVRLGHARERYRLPAYQPHHALTDA 222 Query: 182 YATLALVWLIREKK 195 AT L + Sbjct: 223 LATAELFQAQLQYH 236 >gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes 130Z] gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes 130Z] Length = 259 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 59/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + + KP D DPEA+ + Sbjct: 11 IVLDTETTGMNQFGAHYEGHCIIEIGAVEL-INRKYTGRKLHLYVKP--DRPIDPEAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + ++ F I +N FD + F ++ D Sbjct: 68 HGITDEMLADKP-DFSTVAQEFIDFIKDAELLI---HNAPFDVGFMDYEFRKHHIDIKT- 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R Y L L I++ H A Sbjct: 123 --ADICTVTDTLQMARRQYPG--------------KRNNLDALCDRLHIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLF 199 D + + + LF Sbjct: 167 LDAEILGDVYLAMTGGQVSLF 187 >gi|258620167|ref|ZP_05715206.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM573] gi|262165546|ref|ZP_06033283.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] gi|258587525|gb|EEW12235.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM573] gi|262025262|gb|EEY43930.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] Length = 233 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 13/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + D V + Q + + + +P + +V I GIT Sbjct: 44 LVALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPT--KPLEEGSVVIHGIT 101 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + F I+ + + + R W Sbjct: 102 HSELRHAQEPEV----VLSELFDALRGKIVVAHFRHIEREFLRQAT------LNLWDEAV 151 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ + Q R S +L L G+ + H A D AT Sbjct: 152 EFPIIDTLEIEHYVQNAQRSLWQRLLRRPLN-SVRLGQSRLRYGLPAYSPHHALTDAIAT 210 Query: 185 LALVWLIREKK 195 L Sbjct: 211 AELFQAQYAHH 221 >gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] Length = 253 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 31/229 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + V A+ + +F I +N FD + F + D Sbjct: 66 HGISDEFLQDKPV-FADIADEFIEFIRGAELII---HNAPFDIGFMDYEFSKLNKDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R I+ L L I++ H A Sbjct: 122 --ADFCQITDSLVMARQIFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 D + + + F D N++ + ++ I + V Sbjct: 166 LDAEILADVYLAMTGGQTSLAFSMEADTSNESYVEEVQRIDRPVSGLRV 214 >gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13] Length = 216 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 28/211 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F ++D ET G +VA DR + V++ + + I++ + + E + +T I Sbjct: 29 FTVFDTETTGFNVARDDRLIELGAVKI-KNLQVIDN-SAYQTYINPNRQIPREIIELTSI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ E ++ + + C +G + + FD + RN Sbjct: 87 TQEQTDEAPQAL-EAITKLTNMANQTSVCYVG-HYLAFDMQAIQAELKRNNLKW------ 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D LD++ I L+ A G H A D Sbjct: 139 KNPKSLDTLDLIGYIAPSYDMRD-------------LEKYARDFGTRIYQRHSALGDALT 185 Query: 184 TLALVWLIREKKPK----LFEYLYDYRNKNQ 210 T L + + + L + Sbjct: 186 TAYLFTELLQLSQDRGLKTWGDLLKIKGSQN 216 >gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 240 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 56/192 (29%), Gaps = 16/192 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V V R E I E AV + GIT ++ Sbjct: 11 FDLETTGTDPRTSRIVTAAVVEV-RDGEPIGRREWLA---DPQVPIPDGAVAVHGITNER 66 Query: 68 ALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E + N FD R+ G Sbjct: 67 AAAEGRSAREVVEEVAEVLVAHWRAGAPVVAYNAAFDLSLLAAELGRHGLRPLS-ERLEG 125 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++D A L+ + G+ H AHDA AD A + Sbjct: 126 AETGPVVDPYTIDRAV---------DRYRKGKRTLEAVCGEYGVVHDRAHDAGADALAAV 176 Query: 186 ALVWLIREKKPK 197 + + E+ + Sbjct: 177 RVACALAERHRE 188 >gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31] gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31] Length = 238 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 29/190 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D DR + + V + + +C P D EA + G++ Sbjct: 5 IILDTETTGFDPKTGDRLVEIGCIEV-VDFMPTGRSFHEYCDPLRDM--PAEAQKVHGLS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +F + +N FD + + Sbjct: 62 IEFLTGKPKFH-EIADAFLEFV---GDSPVIAHNAAFDRSFVNFELEKCNRGP------- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 L R + + ++P L L I + H A D + Sbjct: 111 -------LPESRWVDTLAMAKKRFPGMY-----NSLDALCKRFKISLDSRDKHGALIDAH 158 Query: 183 ATLALVWLIR 192 + ++ Sbjct: 159 LLAEVYLELQ 168 >gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703] gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703] Length = 244 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + R + V V + D L DPEA I Sbjct: 9 VVLDTETTGMNRLGVHYEGHRIIEIGAVEV-INRRLTGRH--YHVYLKPDRLVDPEAFQI 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A+ +F + +N FD + F D + Sbjct: 66 HGISDEFLIDRPA-YADIVDEFIEFIRGAE---LVIHNASFDIGFMDYEFRMLNRDIPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLAMARRLFPG--------------KRNNLDVLCTRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 LDAEILAEVYLAMTGGQTS 184 >gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] Length = 247 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 24/201 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G DR QF + VD + + E+ + P EA+ + IT Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIP---IKLEAMEVHNIT 58 Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P E F +R+ + S N + +NI FD + + N Sbjct: 59 PDLLENKPKAVETNFYKRLEELNSDEN--YLIAHNINFDLDMIKKEGFEN---------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + L+D +R D + +K ++ + + AHDA DV Sbjct: 107 ----SYKLIDTLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITIKAHDAIGDV 162 Query: 182 YATLALVWLIREKKPKLFEYL 202 + + K +++ L Sbjct: 163 LVMKLFLSKLVGKCREVYPSL 183 >gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] Length = 977 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 53/187 (28%), Gaps = 33/187 (17%) Query: 6 VIYDYETFGRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G D + A V E E E F E V +TGI Sbjct: 50 VVLDTETTGLSRQDDELIEISAAVL--SGREVTERFETF---VRPSKPIPAEIVELTGIR 104 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + +N FD R F ++ D Sbjct: 105 DADVRDAPP----ATQAVRDLARFVGGRPVIAHNAAFD---------RAFIEAVPGGSDA 151 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + R S +L LA G +H A DV A Sbjct: 152 SDIWIDSLALSRIA-------------LPRLASHRLSSLAETFGCA-DVSHRAGDDVRAL 197 Query: 185 LALVWLI 191 + ++ Sbjct: 198 CGVWRIL 204 >gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18] gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18] Length = 231 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 20/176 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV R + + +D Q + E A + GIT + Sbjct: 11 FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLA---DPGVEIPAGAAAVHGITTEY 67 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A G E + + I N +D + R+ + Sbjct: 68 AREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGE------ 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + P + L+ LA G+ NAH + D Sbjct: 122 ---------LPPGVVLDPYVLHKHVIPRKRGKRTLEVLAAEYGVSLENAHTSADDA 168 >gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 257 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 58/216 (26%), Gaps = 30/216 (13%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F + EA+ + Sbjct: 10 VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V AE + +F I +N FD + F + Sbjct: 67 HGITNEFLQDRPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L V R +Y L L GI++ H A Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L N + L Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDASANHENIADL 202 >gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI] gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 937 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 31/176 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M V+ D ET G D DR + VR+ + + ++ + + Sbjct: 1 MIKEIVVCDLETTGLDPLSDRIIEIGLVRL-KDLKIVDIYHT---MVNPGRPLPLKIKNL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+ FS + I +NIRFD + +F Sbjct: 57 TGLDDSDLASAPA----FSGVREKVLGFIGDAPIAGHNIRFDMGFLAAAGGISF------ 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N +D +++ R G +++L+ L +E H Sbjct: 107 ----KNPAYDTVELARLA-------------VPGLPTYRLESLCERLNVEAAARHR 145 >gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] Length = 257 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 58/216 (26%), Gaps = 30/216 (13%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F + EA+ + Sbjct: 10 VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + V AE + +F I +N FD + F + Sbjct: 67 HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L V R +Y L L GI++ H A Sbjct: 123 --AEICSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L N + L Sbjct: 167 LDAEILADVFLIMTGGQLALLGEEDASTNHENITDL 202 >gi|261251373|ref|ZP_05943947.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260938246|gb|EEX94234.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 239 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET G D D V + I + + +P E+V I GIT Sbjct: 49 FLAMDFETTGLDSDNDDIITIGTVPFNLNRIFINQAQHWTVRPRKQL--AEESVVIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L + S Q + I+ + R + + + + + Sbjct: 107 HSDVLDAP----DLSGIYEQVLEQMSGKIMVVHYQRIEREFFDKALMARIKEGIEFPVVD 162 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L ++ F+ + P+ S +L G+ H A D AT Sbjct: 163 TMHIETQLQQKQSGGLFNKILGKKPA------SVRLGASRSRYGLPQYTPHHALTDAVAT 216 Query: 185 LALVWLIREKKPK 197 L+ + Sbjct: 217 AELLQAQLAHHYE 229 >gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 233 Score = 78.7 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 30/195 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + A + + + + F + D +A + G T Sbjct: 4 IVLDTETTGLDPKKGHRIIEIAAIAL-EGRKVSKRH--FHHYLDPEREVDEDAARVHGFT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+F+ F + + +N FD + N Sbjct: 61 WDMLKGR----AKFADIATSFLEFVDGAELMAHNAPFDMSFINNELRLLGLPPLEN---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R ++ +G L L I+ H H A D Sbjct: 113 --PVVDTLKMAREMHPGKKNG--------------LDALCSRYEIDNTHRTLHGALLDTE 156 Query: 183 ATLALVWLIREKKPK 197 + + + + Sbjct: 157 LLAEVYFAMTRGQES 171 >gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] Length = 244 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ + +F + + + +N FD + N + Sbjct: 61 LEFLADKPL----FADVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDNYGRIVE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114] Length = 243 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 66/232 (28%), Gaps = 39/232 (16%) Query: 2 TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYL 52 +N ++ D ET G + R + V E I F D L Sbjct: 8 SNRIIVLDTETTGMNFSGGPVYEGHRIVEIGAV------EIINRKLTGNHFHVYIKPDRL 61 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 D EA+ + GIT + + IH +F + +N FD + F Sbjct: 62 IDLEAIDVHGITDEFLYDKPE-----YKDIHDEFLEFIKGAELVAHNAPFDVGFMDYEF- 115 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE- 170 S+ + L Y D + + L L GI+ Sbjct: 116 ---------------SKLNKLIGTTDQYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDN 160 Query: 171 -HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 H H A D + L+ + L + + + + + + Sbjct: 161 SHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGENSSDSDEETIKRLNSGR 212 >gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 323 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 28/223 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G DR +FA VR D F + + + + GI Sbjct: 122 TILVFDIETTGFSRRGDRIIEFA-VR-DLTG---GKNSTFQTLINPER--EVKNAAVHGI 174 Query: 64 TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + EF + Q+ + + +N FD + F R + Sbjct: 175 STNMVCSSDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEM 234 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 D L + + + S +S +++L I AH Sbjct: 235 -----PGDWLFVDTLPIAKQL---------VDSNGKKISSASMKNLVEHYKIPVDGKAHR 280 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 A DV A ++ + + L + + + + Sbjct: 281 AMRDVTALCYVLQKLTFELKLTVPQLLEKSFRVSDIQTTPPKK 323 >gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA 110] Length = 239 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + ++ + + + + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCV---EMFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V E + +F + +N FD + R + Sbjct: 61 AEFLSTKPVFH-EVADAFLEFI---GDAPLVIHNASFDISFINAELDRIKRAAIPREQL- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + S +L DL I++ H A D Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39] gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39] Length = 334 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 7/113 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G +V DR + A ++ ++ T + + + I GI Sbjct: 9 LAFFDLETTGVNVGSDRIVEIAILKAMPDGTELIKTL----RINPEMPIPLASSLIHGIY 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + + + +F + + GYN+ RFD F R D Sbjct: 65 DEHIAAEP-TFKAVAAEVAEFIGDAD--LAGYNSNRFDIPVLLEEFLRAGVDF 114 >gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC 14018] gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] Length = 359 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 27/193 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-------CKPADDYLPD 54 + +FV+ D ET G + +D+ + V+ + IE + + Sbjct: 175 SKNFVVIDCETTGLNSKVDKIIEIGAVKF-IDGK-IEEFQKLININCDSVSNFNKNNFIP 232 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 E + +TGIT GV R F ++GYN +++ +F Sbjct: 233 NEIIELTGITSNMLESYGVGLDLALREFIDFVGKLP--LLGYNVSFDIGFFNSALFS--- 287 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D S + N D+ ++ F +++L+ + I Sbjct: 288 LDEKLSSAFSVNKVIDISRFVKHDRRFL-------------KNYQLKTVLHEYNISESVP 334 Query: 175 HDAKADVYATLAL 187 H A D T L Sbjct: 335 HRALLDARLTARL 347 >gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A] gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A] Length = 227 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 23/224 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +++D+ET G D+ + V +++ + E + +TG Sbjct: 6 KKILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISNLTG 65 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + RDGV E R++ +T ++ YN + S + ++ Sbjct: 66 ITNEMLARDGVEEEYAFRQLDNLIDE-DTLLVAYNLAFDIGFLSA-----LYQTYVAHNY 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D + V + Y + KL++ + + AH A D Sbjct: 120 KIQNDILDCMAVYKDRYPYP---------------HKLENAVARFELSNNQAHRASEDAK 164 Query: 183 ATLALVWLI--REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 AT ++ + E KL+ + Y K L + LV Sbjct: 165 ATFKVLDCLASEENNLKLYVNVLGYNKKYGLPDRTYFKKHIELV 208 >gi|91223850|ref|ZP_01259114.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|91191342|gb|EAS77607.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] Length = 248 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 58 FVSVDFETTGLNSEEDVILTIGLVPF-----TIDRVQCNGSAHWVVNPNRELNHESVIIH 112 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + ++ I S ++ + + + N + + + Sbjct: 113 GITDSEVKNAPQ-LSQILGEILDALS---GKVVLVHYKNIERQFFNNALLNSIGEGIQ-- 166 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D LD+ AI G + S +L G+ H A D Sbjct: 167 ----FPVVDTLDIEYAIQRRECRGFINKLKGKKPGSVRLGHARERYGLPAYQPHHALTDA 222 Query: 182 YATLALVWLIREKK 195 AT L + Sbjct: 223 LATAELFQAQLQYH 236 >gi|261248373|emb|CBG26210.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 189 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 20/188 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET G + + D + E + I GIT Sbjct: 15 FLFIDTETTGLGAD-AEIVEICII--DSHGSI-----MLNTLIKPTKSIPDEEIAIHGIT 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + R + + F + YN +D + + + S + Sbjct: 67 NEMVAFAPA-WTDICRTLEELFMRFG--FVIYNA-DYDIRLIKQTYALHGQSSVAAPYML 122 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYA 183 + + + P + G KL D A G++ AH A AD Sbjct: 123 AYNSVCAMM-------LYAEYRDEPGKYKGYKWHKLVDAAEREGVKLEGQAHRALADCKM 175 Query: 184 TLALVWLI 191 TL LV + Sbjct: 176 TLGLVRAL 183 >gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 232 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 61/213 (28%), Gaps = 28/213 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T FV++D ET G DR V V I + + K + PE+ I Sbjct: 44 TTRFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQD---IYKPESAKIH 100 Query: 62 GI----TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GI + ++ I + T I+ ++I FD + R Sbjct: 101 GILRNGSYEQVNEQ--------EAIEKCLEFIGTDILIGHHIGFDVAVINSALKRAQL-- 150 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 L + + + +R + L +LA A I + H + Sbjct: 151 -----------GKLKNRVLDTETLYKRLVHPINRPLQEKRYTLDELAEALKIPLHDRHTS 199 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 D T I ++ + Sbjct: 200 AGDALITAIAFIKIVKRLNSDGSLTVKQLFRKN 232 >gi|329946199|ref|ZP_08293812.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 170 str. F0386] gi|328527797|gb|EGF54788.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 170 str. F0386] Length = 276 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 44/172 (25%), Gaps = 25/172 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D + A V D S D I G+ Sbjct: 56 YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTL---IDPGAGVDVGPTRIHGLV 112 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + + + ++ +N + ++ + R D Sbjct: 113 AEELSGAPG-LDDVADLLVADLA--GRAVVAHNARFDVGFLTQALGARGLLD-------- 161 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R ++W S +L G+E H+ Sbjct: 162 -----------RGARVPRVCTMEWARHFMTTPSRRLTTCCEVAGVEIGRHHN 202 >gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei] Length = 1404 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 22/194 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V++D E+ G + A D + A ++ + F P++ I Sbjct: 760 KYRLVVFDIESTGLNTATDAIIEVAA------FDPV-EGTSFSSLVNPQRPIPPQSTAIH 812 Query: 62 GITPQKALRDGVVEAEFSRRIHQFF--------SVPNTCIIGYNNIRFDDYYSRNIFYRN 113 IT +E ++ ++ T +IG+N D+ R F Sbjct: 813 HITDSMVQGAPR-LSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSE 871 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG--ATSFKLQDLALANGIE- 170 D +L ++ S ++ S +L L +E Sbjct: 872 SVD---TENLLFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEA 928 Query: 171 HVNAHDAKADVYAT 184 H A D Sbjct: 929 DGELHRADTDAKML 942 >gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927] gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma brucei] gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1404 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 22/194 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V++D E+ G + A D + A ++ + F P++ I Sbjct: 760 KYRLVVFDIESTGLNTATDAIIEVAA------FDPV-EGTSFSSLVNPQRPIPPQSTAIH 812 Query: 62 GITPQKALRDGVVEAEFSRRIHQFF--------SVPNTCIIGYNNIRFDDYYSRNIFYRN 113 IT +E ++ ++ T +IG+N D+ R F Sbjct: 813 HITDSMVQGAPR-LSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSE 871 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG--ATSFKLQDLALANGIE- 170 D +L ++ S ++ S +L L +E Sbjct: 872 SVD---TENLLFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEA 928 Query: 171 HVNAHDAKADVYAT 184 H A D Sbjct: 929 DGELHRADTDAKML 942 >gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513] gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513] Length = 233 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 22 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 78 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 175 AYLTAGLYLHQQGVAKP 191 >gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 242 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 57/195 (29%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + + R +FAG+ + + + + P D DP+A + GI+ Sbjct: 4 IILDTETTGLEPSQGHRIIEFAGLEM-VNRKLTGRSLHLYIHPERD--IDPDAERVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A I F I +N FD + F R + Sbjct: 61 LDFLADKPR-FAAVGPEIADFLRDAELII---HNAPFDVGFLNAEFDRIGIE---RVSTL 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 S D L + R + L L I+ N H A D Sbjct: 114 CASVIDTLVMARDQFPG--------------KRNSLDALCDRFEIDRSNRTLHGALIDCE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLGEVYLWMTRGQNS 174 >gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] Length = 239 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 29/193 (15%) Query: 8 YDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G + DR + GV + + + A + G++ + Sbjct: 6 FDTETTGLNPRGGDRLVEIGGV---ELINHVPTGNAYHVYINPQRDMPEGAFKVHGLSEE 62 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E + + +F + +N FD + R + + Sbjct: 63 FLSDKPLFE-QVADEFLEFVGDG---TLVIHNAAFDMGFINMELERCGRRTISNTQ---- 114 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184 D L++ R + P+ L L GI++ H A D Sbjct: 115 -VIDTLEIARRKHPSGPN--------------SLDALCSRYGIDNSKRVKHGALLDAEIL 159 Query: 185 LALVWLIREKKPK 197 + + K + Sbjct: 160 AEVYLEMIGGKQR 172 >gi|295102295|emb|CBK99840.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Faecalibacterium prausnitzii L2-6] Length = 337 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 54/208 (25%), Gaps = 34/208 (16%) Query: 1 MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 M + V++D E G + V++D +++ + +P Sbjct: 1 MPRNLVLFDLEWNIGYQPFIFNYHGVQQTFRGEIIEIGAVKIDEDANVLDTFSIHL-RPR 59 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 +TG+T + G + + +F D + Sbjct: 60 IFRCLQHHIAKVTGLTQEDL-DKGEP---IIQGLRRFMKWCGPDAEFAEWGMDDVPVLKQ 115 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + D + ++ KL+++ G Sbjct: 116 NLFLCNLDESCPT----------------VWYDLQQLFLREYPRKEGEGMKLENVVTRMG 159 Query: 169 IEHVNA-HDAKADVYATLALVWLIREKK 195 I HDA +D T L ++ + Sbjct: 160 IPLERPFHDALSDTLYTADLCRMLDLRA 187 >gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042] gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] Length = 246 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F + L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPERLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L AE + + + +N FD + + Sbjct: 69 HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188 >gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21] Length = 205 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 31/214 (14%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + I +N FD + F + + Sbjct: 65 HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 D + ++ K K + Sbjct: 164 LDAEILADVYLMMTGGKQIYSMKKNLLSLKLSVL 197 >gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus vannielii SB] gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus vannielii SB] Length = 189 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 57/189 (30%), Gaps = 12/189 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + AQ + + D + ++ ++ A I G+T Sbjct: 2 YVFLDTETTGLHP--GQIAQLSYLVTDEELNIKKAFNQYYSV----EHMSRSAARIHGLT 55 Query: 65 PQKALR--DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 G+V + + + S +I +NI FD + + R + Sbjct: 56 QDILEELSSGLVFEDTIKEV---LSDLKYSVIIGHNISFDIRFLKAEIERLGEEYVPKEK 112 Query: 123 DNGNSRWDLLDVMRAIYAF-SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + + + P I+ L+ G V HDA+ D Sbjct: 113 FCTMCHFTKICKIPGVRQYKRPKLIELMDYLKQCPKEGLKFTKNTYGCSDVGFHDARFDT 172 Query: 182 YATLALVWL 190 Sbjct: 173 GVMYLCYKK 181 >gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] Length = 234 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 48/196 (24%), Gaps = 27/196 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V D ET G D AL R + A V V F D A+ + G+ Sbjct: 3 YVFLDTETTGLDPALGHRIVEIAAVEV-CNRRSTGRH--FHRYLNPGRESDEGALRVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E +F I +N FD + Sbjct: 60 SREFLQDKPA-FQEICSEFLEFIEDAEILI---HNAPFDVGFINRELG------------ 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181 L+ M D + L L I+ H H A D Sbjct: 104 -----LIRLEPMHNYCLQIVDTLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDA 158 Query: 182 YATLALVWLIREKKPK 197 + + + Sbjct: 159 ELLAEVYLAMTRGQES 174 >gi|224535480|ref|ZP_03676019.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus DSM 14838] gi|224522946|gb|EEF92051.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus DSM 14838] Length = 243 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 29/246 (11%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70 ET G + +DR + ++V + T + + A + GI + Sbjct: 2 ETTGTSINVDRIVEICYLKVHPNGNEEAKTL----RINPEMHIPEGASAVHGIYDKDVAD 57 Query: 71 DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130 E +R I + G+N+ RFD F R D Sbjct: 58 CP-TFKEVARTIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD-------------- 100 Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL-VW 189 +D+ R + + + ++K G +AH A AD AT + + Sbjct: 101 -IDLSRRKFVDVQVIFHKLEQRTLSAAYKF-----YCGKNLEDAHTAAADTQATYEVLMA 154 Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-WHPR 248 + + + + + + M + +F + + V P Sbjct: 155 QLDRYSELQNDIAFLADYSSFNKNVDFAGRMIYDDNGVEVFNFGKYKGMSVTDVLKRDPG 214 Query: 249 YKDSVI 254 Y ++ Sbjct: 215 YYSWIL 220 >gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25] gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp. Ex25] Length = 205 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 14/193 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + +I D ET G +F + + ++ +A I Sbjct: 6 TENAIIIDTETTGLGADA-EIVEFTAICANSGEVIVDEL------VKPTCSIPADATAIH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + FS R + II YN+ FD ++ +Y S Sbjct: 59 GITNEDVKDAPDFHLMFSNRFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179 + ++ + YA W + L + ++ + AH A A Sbjct: 116 VHDLFFKFCVPQCAMLWYAEFYGV--WNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALA 173 Query: 180 DVYATLALVWLIR 192 D T L+ + Sbjct: 174 DCEMTRRLIHAVN 186 >gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 178 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 31/192 (16%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G V R + V E I F D D A+ + Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + AE + +F I +N FD + N + R Sbjct: 65 GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 S D L + R + + L L G+++ H A Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165 Query: 180 DVYATLALVWLI 191 D + + Sbjct: 166 DSEILADVYLAM 177 >gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] Length = 458 Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 44/177 (24%), Gaps = 27/177 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK-PADDYLPDPEAVFITGIT 64 + D ET G D + QF + + + + + + ++ I GIT Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKG---VLKPDDACEQMLNPGIPIPSSSIAIHGIT 71 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 S ++ ++I FD R D Sbjct: 72 DAMVRNAPT----LSDVWPNLVGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDW------- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + A + S L LA +E N H A D Sbjct: 121 -----------QKPRALCVRMLAT-IAAPTLASHSLDALATWLNLETRNRHRALGDA 165 >gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL 1118] Length = 298 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 26/193 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ D ET G + + + ++ + E F+ + + +T Sbjct: 127 KNDFIAVDLETTGLNTSRSKIISIGAIK--ENLK--GEEEQFYRLIKINEAIPEKITELT 182 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + GV + +F + I+GYN + FD+ + + + S Sbjct: 183 GLTSKVLNERGVTLEQALNEFRKFV--GSEMIVGYN-LSFDNNFLLKAYLSIGQRALVNS 239 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 DL+ +++ F + + L+ + GI++ N H+A +D Sbjct: 240 MK------DLMGIVKEKDIFLDN-------------YDLETVLKEYGIKNDNRHNALSDA 280 Query: 182 YATLALVWLIREK 194 AT L + +K Sbjct: 281 RATFKLAKELNKK 293 >gi|51244817|ref|YP_064701.1| DNA polymerase III subunit epsilon [Desulfotalea psychrophila LSv54] gi|50875854|emb|CAG35694.1| probable DNA polymerase III, epsilon chain [Desulfotalea psychrophila LSv54] Length = 239 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 30/203 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58 FV D+ET G D+ D + D T +CK A ++ +P ++V Sbjct: 49 FVALDFETTGLDLQKDGILSIGLIPFD--------THRIYCKKAAYWVINPHSPLGEDSV 100 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + + + + ++ + R F D Sbjct: 101 IIHGITHSDINNAPG-LGKVWQEVLNELA--GKIVVVH----------YREIERKFLDKA 147 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAH 175 + ++D M+ W S +L + G+ H H Sbjct: 148 LHELLGEGIAFPVIDTMQIESIIQQKKRGGLWNWLKGRHPESIRLANSRSRYGLPHYQVH 207 Query: 176 DAKADVYATLALVWLIREKKPKL 198 A D AT L+ Sbjct: 208 HALTDAIATAELLQAQIAHHYSD 230 >gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae] Length = 254 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F L DPEA + Sbjct: 9 IVLDTETTGMNKLGIHYEGHNIIEIGAVEV-INRRLTGRH--FHVYIKPARLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F + +N FD + F + D Sbjct: 66 HGISDEFLQDKP-TFAQIADEFLDFIRGAE---LVIHNAPFDIGFMDYEFSKLNRDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 N D L + R ++ L L I++ H A Sbjct: 122 --ANFCQITDSLVLARKLFPG--------------KRNNLDALCDRYHIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 LDAEILAEVYMAMTGGQTS 184 >gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis L2-32] gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis L2-32] Length = 261 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 29/192 (15%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +V D ET G D R + VR+ + + + IT Sbjct: 97 DDYVAVDIETTGL--GRDARIIELGAVRIRHGRKV----ASYSQLVNPQIPIPAKVTQIT 150 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + ++ + + + F IG+N RFD R Sbjct: 151 GITDRNVKGKPTID-KALPKFYAFCGRD--TWIGHNIRRFDIPVIAREAQRVG------- 200 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G D M A P ++ DL GI H A D Sbjct: 201 --AGMPDVSFYDTMELSQALLPQLDH----------HRVVDLIRYFGIAKTERHRAADDA 248 Query: 182 YATLALVWLIRE 193 T + +++ Sbjct: 249 AQTAQIFEHLKQ 260 >gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149] gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149] Length = 300 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 70/189 (37%), Gaps = 27/189 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++YD ET G + D P +D Q + I + +P + P+A I GITP Sbjct: 135 IVYDLETTGVNPWKDEPLSMCI--MDLQGKVIFEH---YFRP-EHTKSWPDAAAIHGITP 188 Query: 66 QKALRD-GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K + + +I + F + +I YN I FDD + + Sbjct: 189 EKVANESPMSFYR--DQIQKIF-DASDILITYNGINFDDSFLEAAGIKL----------- 234 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 DVMR D W G ++L D A G E AHDA DV AT Sbjct: 235 --PEVMQFDVMREYAWLIHD---WDEYHQGWRWWRLIDCAAYYGYEFS-AHDAAEDVKAT 288 Query: 185 LALVWLIRE 193 L + Sbjct: 289 LYCYKKMVF 297 >gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 240 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 54/209 (25%), Gaps = 40/209 (19%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + + W + + E + + EA + GI Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAI---ELWNHVATGETYHVYINPERSMPAEAFGVHGIG 60 Query: 65 PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P + A+ + F + +N FD + Sbjct: 61 PDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFV---GDARLVIHNAAFDMKFLNAELGW 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 D L + R + SP L L I++ Sbjct: 118 MGLPPIPMEQA-----LDTLAIARKRFPGSPA--------------SLDALCRRFNIDNS 158 Query: 173 NA--HDAKADVYATLALVWLIREKKPKLF 199 N H A D + + + F Sbjct: 159 NRVLHGALLDSEILAEVYLELIGGRQPDF 187 >gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15] Length = 295 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 29/199 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61 + +V+ D+ET G Q ++ + E+I+ + IT Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 177 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ + + E +FS ++ F S + +N FD + + N + + Sbjct: 178 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 232 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + KL L +++ N+HDA D Sbjct: 233 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 273 Query: 182 YATLALVWLIREKKPKLFE 200 T + I+ + K+ + Sbjct: 274 LVTNKVYQYIKHENNKIVQ 292 >gi|269961702|ref|ZP_06176063.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833567|gb|EEZ87665.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 239 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 53/197 (26%), Gaps = 18/197 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + + V +I + K D E+V I GIT Sbjct: 49 FVALDFETTGLNPQKNGIITIGLVPF--NLNRIFLRQAKHWKVRPQEKLDEESVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + I+ + R + + + Sbjct: 107 HSELIDAP----DLGEILGPLLESLAGKIVVVHYRRIEREFLAQA---------LRTRIG 153 Query: 125 GNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181 + +LD ++ G W S +L G+ H A D Sbjct: 154 EGIEFPVLDTLQIEEDIQQRTSGGLWNKLKGNKPKSLRLAQSRRRYGLPDYTPHHALTDA 213 Query: 182 YATLALVWLIREKKPKL 198 AT L+ Sbjct: 214 IATAELLQAQIAHHYSE 230 >gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum gryphiswaldense MSR-1] Length = 619 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 28/186 (15%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV +D ET G DR Q VR+ + F +++ G Sbjct: 429 TFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGE--SFERLIDPGIPIPAQSMAYHG 486 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + QF + + +N+ FD + Sbjct: 487 ISNDMVKGKPP----LAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGI------- 535 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +LD M P L+ +A G+ + A +D Sbjct: 536 ---ALRQPVLDTMILAALLDPGY-----------DLSLEAVAGRLGVPPLPHRSALSDAL 581 Query: 183 ATLALV 188 T ++ Sbjct: 582 VTAEIL 587 >gi|153006866|ref|YP_001381191.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152030439|gb|ABS28207.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 238 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 21/187 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFIT 61 F + D E G D A D VR+ R + E F KP + P E + I Sbjct: 46 TFTVLDCEMTGLDPARDEILSIGAVRI-RNGRIVMAERFYQVF-KPTEAVSP-KEVILIH 102 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ P + R G+ + R+ F ++ + D + R Sbjct: 103 GLGPDEVSR-GLPLGDALERLLAFI---GDSVVIGHFTSVDLSFLNAALAS------RKE 152 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N D + + A L+D+ + G+ AH A D Sbjct: 153 RSLKNPALDTRLLYAW------WRRRTSPAGQAAADANLEDIVIEMGLPRYPAHHAFYDA 206 Query: 182 YATLALV 188 T + Sbjct: 207 LTTGMVF 213 >gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218] Length = 234 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 31/199 (15%) Query: 7 IYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D ET G + R + V + + F D EA+ + Sbjct: 2 VLDTETTGMNLEGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRAIQDEAIEV 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + E+ +F + +N FD + F + + + Sbjct: 59 HGITDEFLVDKP----EYKDVHEEFLDFIRGAELVAHNAPFDVGFMDYEFSKLSIPTAKT 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAK 178 D L + A + L L GI+ H H A Sbjct: 115 ---------DELCKVTDTLAMAKKIF-------PGKRNNLDVLCDRYGIDNSHRTLHGAL 158 Query: 179 ADVYATLALVWLIREKKPK 197 D + L+ + Sbjct: 159 LDAEILADVYLLMTGGQTS 177 >gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114] gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114] Length = 463 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + DR + A VR + T + +T I Sbjct: 22 VVVDLETTGGNSYQDRITEVALVRF-----EQGRTTHYEQLVNPCRSIPEFVARLTEIHD 76 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + V A+ + + ++ +N RFD + R+ F R D Sbjct: 77 ETVKNAPV-FADIAGDLLPLLQ---GAVVVAHNSRFDYTFLRHEFARIHTDFAA------ 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L ++ P+ + L + GI+ N H A DV A Sbjct: 127 ----PSLCTVQLSRRLYPEFYK----------HSLDSIIERTGIQTANRHRAMTDVVALC 172 Query: 186 ALVW-LIREKKPKLFEYLYD 204 + + EK + ++ Sbjct: 173 DYLELSLAEKNHQQWDEHVR 192 >gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] Length = 229 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + + + F + +P+A+ + GI+ Sbjct: 5 IVLDTETTGIDHRKGHRLIEIGCIEI-EDLLPTGR--TFHHFVDPEREIEPDAIRVHGIS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K + + + +F I +N FD + R + Sbjct: 62 NEKVRGKPK-FGQIADELCEFIGDKR---IIAHNAAFDRGFINMEMERLSRVCHP----- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L++ R + + L L I H A D Sbjct: 113 DDQWIDTLELARNKFPGMAN--------------SLDALCRRFNISLAERDLHGALIDAR 158 Query: 183 ATLALV 188 ++ Sbjct: 159 LLASVY 164 >gi|262171676|ref|ZP_06039354.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|261892752|gb|EEY38738.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 233 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 13/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + D V + Q + + + +P + +V I GIT Sbjct: 44 LVALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPT--KPLEEGSVVIHGIT 101 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + F I+ + + + R W Sbjct: 102 HSELRHAQEPEV----VLSELFDALRGKIVVAHFRHIEREFLRQAT------LNLWDEAV 151 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ I Q R S +L L G+ + H A D AT Sbjct: 152 EFPIIDTLEIEHYIQNAQRSLWQRLLRRPLN-SVRLGQSRLRYGLPAYSPHHALTDAIAT 210 Query: 185 LALVWLIREKK 195 L Sbjct: 211 AELFQAQYAHH 221 >gi|159484124|ref|XP_001700110.1| predicted protein [Chlamydomonas reinhardtii] gi|158272606|gb|EDO98404.1| predicted protein [Chlamydomonas reinhardtii] Length = 398 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 40/207 (19%) Query: 6 VIYDYETFGRD----------------VALD-------RPAQFAGVRVDRQWE-KIESTE 41 ++ D ET G D R A + +++ Sbjct: 202 LVVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDGRMELQEHG 261 Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 +P +P +AV I GI+ Q+A ++G+ + + N +I +N+++ Sbjct: 262 YRIVRPVGFVIP-ADAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVIVAHNLKY 320 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + YR N D+ + R + + ++ + L+ Sbjct: 321 DLNVILSELYR------------RNRAQDVARLERMEGVCTANCSKFYLGRYHKQAELLK 368 Query: 162 DLALANGIEHVNAHDAKADVYATLALV 188 L + AHDA+ D A Sbjct: 369 ALTDE---DMRVAHDAECDAEACAKCY 392 >gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 253 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 31/204 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F + DP+A+ + Sbjct: 11 IVLDTETTGMNQLGAHYEGHCIIEIGAV---EMINRRYTGNNFHIYIKPNRPVDPDAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + +FS+ ++F + +N FD + F + Sbjct: 68 HGITDEMLADKP----DFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTN 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 124 ---DICLVTDTLTMARQMYPG--------------KKNNLDALCSRLGIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + LF+ Sbjct: 167 LDAEILADVYLAMTGGQTSLFDES 190 >gi|255034947|ref|YP_003085568.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans DSM 18053] gi|254947703|gb|ACT92403.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans DSM 18053] Length = 195 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 20/198 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F++ D E G + + Q D W + + P ++ ++ + G+ Sbjct: 2 SFLVLDIEMTGPEPGWNEIIQIGAEFFDDNWRSLGTYLQ-NVYPENEEAFSVKSEEVHGL 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-------CIIGYNNIRFDDYYSRNIFYRNFYD 116 + ++ + ++ N +I ++ D + R + Sbjct: 61 SLDDLEDAPMI-YDVLPEFEKWIKKLNAGKPSLANVVICGQSVINDINFLRFAYRNEKM- 118 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175 W N + DL V + + S L +A G E H Sbjct: 119 ----KWGFSNKQLDLHTVSYLFFQILEKNGK-----QVPRSLSLGSVASYFGFEREEETH 169 Query: 176 DAKADVYATLALVWLIRE 193 +A D T + Sbjct: 170 NALEDARLTAKCFKEFFK 187 >gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1] gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1] Length = 242 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 16/185 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D E G D D A VR+ T +P D ++ + G+T Sbjct: 46 FVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQRDV--PRQSSLVHGLT 103 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + + +I +++ D + R F D Sbjct: 104 ASTLSQA----ADLEAVLLRLLDFIGPAVIVGHHVDLDMGFLNAASRRYFGDELAAP--- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDD-GATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D +R A+ + +F L L G+ AHDA+ D A Sbjct: 157 ------CIDTLRLAMAYEEKRLSLEGGAGLEHAAFDLPSLCRRYGLPEFAAHDARHDALA 210 Query: 184 TLALV 188 L Sbjct: 211 AAYLF 215 >gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. 8004] gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. B100] gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. 8004] gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris] Length = 245 Score = 78.3 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V F+ + +F + + + +N FD + N + + Sbjct: 61 LEFLADKPV----FAEVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDQFGRIID 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|328474758|gb|EGF45563.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 239 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + V +I + K D ++V I GIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + S + + + II + R + + + Sbjct: 107 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + I S GI + S +L G+ + H A D AT Sbjct: 158 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAT 216 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 217 AELLQAQMAHHYND 230 >gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 235 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 24 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 79 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 80 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 134 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 176 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 177 AYLTAGLYLHQQGVAKP 193 >gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 245 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 30/224 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TYADIVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R I+ L L I++ H A Sbjct: 122 E--TFCKITDSLLMARKIFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + + + L + + + + P Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGETQQKSENTETIQRIVRP 209 >gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 957 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET D Q V +D ++ + +TGI Sbjct: 7 KFAVLDFETT-GTSTTDTIIQVGLVIIDE-FDITDRYTSL---VNPGVRIPSSITSLTGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + VE + ++ S C++ ++ FD + + + Y + Sbjct: 62 TDEMVENAPSVE-KVMADLYPLLSD---CVLVAHHASFDHAFLQRSLTKAGYPPF----- 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +D +R + SF+L + GIEH N H A D Sbjct: 113 -TGRVLDTIDALRVAF-------------PSLGSFQLGHVCSLFGIEHENPHQANCDAQV 158 Query: 184 TLALVWLIREK 194 T L I +K Sbjct: 159 TAELWIRIMQK 169 >gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] Length = 309 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 55/199 (27%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G+ R + V + FF D D EA + Sbjct: 7 VALDTETTGKSDDGTTGTHRIIEVGCVEI-INRRLTGRQLQFFV--NPDRHIDEEATEVH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + A+ + + F I +N +FD + + + + Sbjct: 64 GITDEMLADKPH-FADVANELIDFIRGSELLI---HNAKFDSAFLDKEWDLLKLNEHT-- 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + D +++ R I L +L I++ H A Sbjct: 118 -KDMCKIVDTVELARKINP--------------NNQANLDNLCSIYDIDNSRRTVHGALL 162 Query: 180 DVYATLALVWLIREKKPKL 198 D + + + Sbjct: 163 DAQLLAEVYLAMTGGQSSF 181 >gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 247 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 29/189 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G L+ + VR+ + F P P +TGI Sbjct: 74 VVLDLETTGLSPGLNEVIEVGLVRL-----EQGERRSFQSLVRPSRPPSPFIERLTGIRA 128 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + + + N FD + R + Sbjct: 129 WELEEAP-SLEEVLEKAYPLLR---GATLVIQNASFDLGFLRPALEGMG-------YSLE 177 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N D L + + G + L L+ + AH A DV TL Sbjct: 178 NPVVDTLRLAKRA-------------MPGLRRYGLDALSQVLELPPREAHRALGDVERTL 224 Query: 186 ALVWLIREK 194 A+ + + Sbjct: 225 AVAYEVYYM 233 >gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129] gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129] Length = 1443 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 66/483 (13%), Positives = 147/483 (30%), Gaps = 48/483 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI+D ET G D +FAG++V ++E + F D IT I Sbjct: 407 TFVIFDIETTGLHGRYDSVIEFAGIKVKHN-REVERMQFF---LKIDGPLPAAVTEITKI 462 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + G+ + ++ + ++ +N + FD + + Sbjct: 463 TQAQLED-GMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQ-------------- 505 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 ++ ++ + + G S L ++ + + H A D Sbjct: 506 -----FEKYNIAPLTNPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDT 560 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN-----QLRKLIDIQNMTPLVHVSGMFGASRSN 236 A + +E+ + + ++ L T ++++ G ++ Sbjct: 561 QALKKVFDYFKEQVELMGITNLEQLDQELNQQCHFELLKRTFTNTGIIYIKSQSGFAKLY 620 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 L + + + V+ L + F D+ + + + IK V Sbjct: 621 ELLSIALTDNNATRPLVLTSTLQKFAKSFVITDNPVQGDIFKAALTKPLKELEAAIKRVD 680 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 +L+ + R G+ + + L+ ++ A+ + Y + Sbjct: 681 F----VLIAPPGAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAVASDAYFIHPWEN 736 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQL-STLNLPFSDRRLPELFF------RYRARNFP 409 + + + EQ + + + L E+ F Sbjct: 737 EYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLGEQLAYELVVENT 796 Query: 410 HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQ 465 + L+++ D L + L IE L S + GD + + + E L+ Sbjct: 797 NKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTWSQAKAIYGDPLPKLIEQRIQEELK 856 Query: 466 WVI 468 +I Sbjct: 857 AII 859 >gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] Length = 243 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L A+ + + + +N FD + + Sbjct: 66 HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L V R ++ L L I++ H A Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + + Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185 >gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163] gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae WPP163] Length = 245 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 55/204 (26%), Gaps = 30/204 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA I Sbjct: 9 IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNI 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TYADIADDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R I+ L L I++ H A Sbjct: 122 E--TFCKITDSLFMARKIFPG--------------KRNSLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + L + Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSM 189 >gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] Length = 297 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 32/183 (17%) Query: 8 YDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 D ET G D D + A V R +E E F E +TGIT Sbjct: 46 VDVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPSKPISSEITVLTGITD 105 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + ++ +N FD + Sbjct: 106 AMVAGKSIDPSEVT------MFAAPAAVVIAHNAAFDRRF-------------------- 139 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + + ++ + +G KL LA+A G + H A D A + Sbjct: 140 ---LERFSPVFSTKPWACSMSEIDWAAEGFEGAKLSYLAMALGF-FYDRHRAANDCLAAI 195 Query: 186 ALV 188 L+ Sbjct: 196 ELL 198 >gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] Length = 295 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 29/197 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61 + +V+ D+ET G Q ++ + E+I+ + IT Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 177 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ + + E +FS ++ F S + +N FD + + N + + Sbjct: 178 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 232 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + KL L +++ N+HDA D Sbjct: 233 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 273 Query: 182 YATLALVWLIREKKPKL 198 T + I+ + K+ Sbjct: 274 LVTNKVYQYIKHENNKI 290 >gi|312110613|ref|YP_003988929.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y4.1MC1] gi|311215714|gb|ADP74318.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y4.1MC1] Length = 245 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 61/218 (27%), Gaps = 40/218 (18%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+I D ET G D A + R E+ C + P +TG Sbjct: 63 TFMIIDMETTGFSPQHGDEILAMAAAKTVR-GAVKETYYTLVC---PEKAIPPHISALTG 118 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + E R F S +IGY+ + + + YR W Sbjct: 119 ITAKDVQYAPRLH-EAMRSFLSFIS--GGVMIGYHIGHDLSFLNHF-----LWTHYRTKW 170 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + M F L D GI H A DV+ Sbjct: 171 AARFFDMQPIAEMVQRRWF----------------PTLDDALGHYGISCERRHTADGDVW 214 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 A L + L +N + L D+ + Sbjct: 215 AMAEL-----------WAQLLAELKRNNIETLYDLYSA 241 >gi|51596199|ref|YP_070390.1| Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953] gi|51589481|emb|CAH21103.1| similar to Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953] Length = 217 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 27/195 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++I D ET G + + + D + + E I Sbjct: 41 LKRNYLILDTETTGLG-NDAEIIEISII--DCTGKIL-----LDTLVKPLKAIPAEVTAI 92 Query: 61 TGITPQKALRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GIT + + +F + ++ YN + FD N Sbjct: 93 HGITNEMVADAPTWRDIHYQFM------TLTNDRTLLIYNAL-FDSRLIFQTAAANNCPV 145 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHD 176 + +D VM + + QW + + +L + A G+ AH Sbjct: 146 PEKKY-----IFDAECVMESYAKYYG---QWDQKRNKFKWQRLSNAAEQQGVVIDGVAHR 197 Query: 177 AKADVYATLALVWLI 191 A AD TL ++ + Sbjct: 198 ALADCKTTLGIIRAM 212 >gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 30/224 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNMLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TYADIVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R I+ L L I++ H A Sbjct: 122 E--TFCKITDSLLMARKIFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + + + L + + + + P Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGETQQKNENTETIQRIVRP 209 >gi|156974173|ref|YP_001445080.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|156525767|gb|ABU70853.1| hypothetical protein VIBHAR_01887 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 18/196 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + + V +I + K D ++V I GIT Sbjct: 49 FVALDFETTGLNPQKNGIITIGLVPF--NLNRIFLRQAKHWKVRPQEKLDEDSVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + I+ + R + + D + Sbjct: 107 HSELIDAP----DLGEILGPLLESLAGKIVVVHYRRIEREF---------LDQALRTRIG 153 Query: 125 GNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181 + +LD ++ G W S +L G+ H A D Sbjct: 154 EGIEFPVLDTLQIEEDIQQRTSGGLWNKLKGNKPKSLRLAQSRRRYGLPDYTPHHALTDA 213 Query: 182 YATLALVWLIREKKPK 197 AT L+ + Sbjct: 214 IATGELLQAQIAHHYQ 229 >gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3] gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3] Length = 242 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D ET G + + R + V V + + P D EA+ Sbjct: 11 IILDTETTGMNQSSGPIYLGHRIIEIGCVEV-VNRKLTGRHYHEYINPL--QPIDEEAIE 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + + ++ +F + I +N FD + + F + Sbjct: 68 VHGITNEFVADKPKFH-QIAQSFIEFI---DGAEIVAHNANFDVSFMDHEF--SMLQPIG 121 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 D L + + ++ + L L GI++ + H A Sbjct: 122 PKTAEICQILDSLAIAKYLHPGQKN--------------NLDALCKRYGIDNSRRDLHGA 167 Query: 178 KADVYATLALVWLIREKKPKL 198 D + ++ + K Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188 >gi|163800687|ref|ZP_02194587.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] gi|159175036|gb|EDP59833.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] Length = 239 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 18/196 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + + V +I + K D E+V I GIT Sbjct: 49 FVALDFETTGLNPQKNGIITIGLVPF--SLNRIFLRQARHWKVRPQEKLDEESVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + ++ + R + + D + Sbjct: 107 HNELVDAP----DLDEILGPLLESLAGKVVVVHYRRIEREF---------LDQALLTRLG 153 Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181 + +LD ++ W S +L G+ H A D Sbjct: 154 EGIEFPVLDTLKIEEDIQQKTSGGIWNKLKGNKPQSLRLAQSRRRYGLPDYTPHHALTDA 213 Query: 182 YATLALVWLIREKKPK 197 AT L+ Sbjct: 214 IATAELLQAQIAHHYN 229 >gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] Length = 248 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 37 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 92 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 93 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 146 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 147 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 189 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 190 AYLTAGLYLHQQGVAKP 206 >gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] Length = 926 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNRKVVKTYSFL---INPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI Q + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL GI+H++ H A +D Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I K L + + + Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186 >gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12] Length = 291 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 29/197 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61 + +V+ D+ET G Q ++ + E+I+ + IT Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 177 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ + + E +FS ++ F S + +N FD + + N + + Sbjct: 178 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 232 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + R + + KL L +++ N+HDA D Sbjct: 233 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 273 Query: 182 YATLALVWLIREKKPKL 198 T + I+ + K+ Sbjct: 274 LVTNKVYQYIKHENNKI 290 >gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] Length = 827 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 29/203 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + I D E G A+ Q V ++ E +++ + + +T Sbjct: 6 SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + ++ ++ I C+ +N++FD + Sbjct: 61 GITDEQLAKAP-DFSQVAQEIFNLIED---CVFVAHNVKFDANLLAEQLFMEG------- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ R D +++ + Y + L +LA ++ +AH A +D Sbjct: 110 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADVLALDLADAHTAISDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 YAT L ++ K L + + + Sbjct: 157 YATAQLFLKLKAKMKSLPKEVLE 179 >gi|56965684|ref|YP_177418.1| hypothetical protein ABC3926 [Bacillus clausii KSM-K16] gi|56911930|dbj|BAD66457.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 238 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 58/206 (28%), Gaps = 27/206 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V++D ET G D V+V ++ + + F+ P E + +TG+ Sbjct: 54 IVVFDLETSGFHPDQGDGILSIGAVKV--TGNEVHN-DHFYETIKPKQPPCEEVLRLTGL 110 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+ + + +F+ + ++ + + R+ ++ Sbjct: 111 SLQELDHSPPIN----DVLLRFYDFAGAATLVAHHAAHERKFMRHATWQEL------GRT 160 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D + A L + A GI H A AD Sbjct: 161 FTHRLIDTTFLTNITAAHQQFQT-------------LDEWCDAYGIAINQRHHALADARM 207 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209 T L Y K Sbjct: 208 TAKLWAKHITLAEHAGYYCLGDIYKE 233 >gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 253 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 31/204 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F + DP+A+ + Sbjct: 11 IVLDTETTGMNQLGAHYEGHCIIEIGAV---EMINRRYTGNNFHIYIKPNRPVDPDAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + +FS+ +QF + +N FD + F + Sbjct: 68 HGITDEMLADKP----DFSQVANQFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTN 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 124 ---DICLVTDTLTMARQMYPG--------------KKNNLDALCSRLGIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + LF+ Sbjct: 167 LDADILADVYLAMTGGQTSLFDES 190 >gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] Length = 902 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 60/201 (29%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D Q V + + I + D P +T I Sbjct: 5 TYAVVDLETTGNQLDYDDIIQIGITFVRQN-KIIGTYHS---MIRTDLDIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I+Q C+ +N+ FD + + F Sbjct: 61 EETMLEKAPY-FKEIAHDIYQQLQE---CVFVAHNVAFDLNFIKKAFKNC---------- 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + S++L +LA A+ I NAH A D Sbjct: 107 ---------NIKYRPKRVLDTLELFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ EK +L Sbjct: 158 TAQLMIKAFEKFEQLPLDTLK 178 >gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1] gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1] Length = 231 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 59/222 (26%), Gaps = 31/222 (13%) Query: 6 VIYDYETFGRDVA---LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ D ET G + R + V + + ++ + + + + EA + G Sbjct: 4 IVLDTETTGLNPYDMPRHRIVEIGAVEI---FNQVPTGKTYHQYIQPERDMPKEAFDVHG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + A+ ++ F + +N FD + + Sbjct: 61 IGEDFLADKP-IFADIAQDFLDFV---GGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQ 116 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKAD 180 D L + R + SP L L GI++ H A D Sbjct: 117 A-----LDTLKIARQKFPGSPA--------------SLDALCRRFGIDNSAREKHGALLD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 + + K F Q + P Sbjct: 158 SEILAEVYLELTGGKQPDFGLSQSKSTPTQQQDENWRPRPRP 199 >gi|320533426|ref|ZP_08034111.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320134363|gb|EFW26626.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 259 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 25/172 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G A D + A V D S D I G+ Sbjct: 42 YAVVDLETTGLSPATDSILEVALVVTDAAGRVERSWSTL---VDPGAGVDVGPTHIHGLV 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + + + + ++ +N + ++ + R D Sbjct: 99 AEELIGAPG-LDDVADLLVADLA--GRAVVAHNARFDVGFLTQALGTRGLLD-------- 147 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R ++W S +L G+E H+ Sbjct: 148 -----------RGARVPRVCTMEWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188 >gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] Length = 210 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 24/180 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G + +R+ + ++ E P +TGIT Sbjct: 20 LVVDVETTGLG-RACEITEIGALRMRGT-QVVDEFEEL---VRPSAPIPPFIEKMTGITT 74 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R + ++ +N FD + Sbjct: 75 DMVAGAD-PVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFLARAARACSMPW------R 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R + +L +A H A D AT Sbjct: 128 TPPSVDTLSLAR-----------LALPRPVVANHRLGTVARHFRTATAPGHRALGDARAT 176 >gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris DX-1] gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris DX-1] Length = 232 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + ++ + + + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGRTYHRYLNPERDMPAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A+ + +F + +N FD + R Sbjct: 61 AEFLADKPL-FAQVADEFLEFI---GDDPLVIHNASFDIGFINAELSRLSRAPVPR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + S +L DL I++ H A D Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 245 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 30/224 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNMLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TYADIVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R I+ L L I++ H A Sbjct: 122 E--TFCKITDSLLMARKIFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 D + + + L + + + + P Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGETQQKSENTETIQRIVRP 209 >gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix] gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix] Length = 228 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 63/208 (30%), Gaps = 31/208 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYL 52 M N F V+ D ET G D Q A V + R + T +P + Sbjct: 14 MANRFRGFLPVVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSE 73 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQF------FSVPNTCIIGYNNIRFDDYYS 106 DP+++ + GI P LR E + R+ + I+ +N FD + Sbjct: 74 MDPKSLEVNGIDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFV 133 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R N + LD + + + D A Sbjct: 134 HTAAERCGIK------RNPFHPFSSLDTVSLAALAFGQTVLARAAD-----------AAG 176 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREK 194 G + AH A D T + I + Sbjct: 177 LGWDAEAAHSAAFDAEKTADIFCQIANR 204 >gi|222149472|ref|YP_002550429.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221736455|gb|ACM37418.1| polymerase epsilon subunit [Agrobacterium vitis S4] Length = 326 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 73/244 (29%), Gaps = 39/244 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G + D + + D + TEV+ + +TGI Sbjct: 74 IILDTETTGLNWRKDEIIEIGLIAFTFDSNGNIGDVTEVYGGLQQPSMSIPADITTLTGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ E + + + ++ +N FD + Sbjct: 134 TDEVVAGQ-SIDMEVVQALIE-----PADLVIAHNAGFDRPF------------------ 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++L M A A++ + G KL L G H H A D +A Sbjct: 170 -----CEMLSPMFAGKAWACSNAEIDWSSRGYEGTKLGYLIGQAGFFHEG-HRAVDDCFA 223 Query: 184 TLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA------SRSN 236 L + F LY ++++R L + H+ R Sbjct: 224 LLEVLARDNDGTASTAFAELYQASQRSRVRILAENSPFDMKDHLKARGYRWSDGSDGRPK 283 Query: 237 TALI 240 + I Sbjct: 284 SWWI 287 >gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94] gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1] gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1] gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94] gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1] gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1] gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] Length = 233 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 22 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 78 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 175 AYLTAGLYLHQQGVAKP 191 >gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 248 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 57/215 (26%), Gaps = 30/215 (13%) Query: 7 IYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D ET G + + V V F D EA+ + Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKVH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + V AE + +F I +N FD + F + Sbjct: 59 GITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 S D L V R +Y L L GI++ H A Sbjct: 114 -AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGALL 158 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L N + L Sbjct: 159 DAEILADVFLMMTGGQLALLGEEDASANHENIADL 193 >gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] Length = 186 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 30/186 (16%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D A DR + A V V + KI + F + GI Sbjct: 8 FCVVDTETTGTDPFAGDRIVEIAAVPVFKG--KIYRNKAFHSLVNPRIRIPALIQKVHGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++ F ++ ++N FD + + + Sbjct: 66 SNMDIEEAPD-----MDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPY 120 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D LD+ I+ L+ L GI+ H A D Sbjct: 121 ------IDTLDLSEEIFG---------------RPHSLKWLCERLGIKTTIRHRALPDAL 159 Query: 183 ATLALV 188 T + Sbjct: 160 VTARVF 165 >gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] Length = 230 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + EA + G+ Sbjct: 4 LVLDTETTGFDPFSGDRIVEIGAV---ELFNHMPTGKTYHQYINPQRAMPAEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R V A+ ++ F T ++ +N FD + Sbjct: 61 DEFLARQPV-FADIAQAFVDFV---GTDLLVIHNASFDMKFLNAELDWLGRAKLPMEQS- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R + SP L L G+ + H A D Sbjct: 116 ----LDTLAIARKKFPGSPA--------------SLDALCRRFGVNNDAREKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] Length = 830 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 33/198 (16%) Query: 1 MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M N +V+ D E + + Q V + E I+ D Sbjct: 1 MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSH 55 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TG+T Q+ ++ + +I + I +N++FD + Sbjct: 56 IKELTGLTDQRLAVAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ R D +++ + +Y + L L GIE +AH Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151 Query: 177 AKADVYATLALVWLIREK 194 A +D AT L+ +R+K Sbjct: 152 ALSDAQATAELLLYMRQK 169 >gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1522 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 45/358 (12%), Positives = 100/358 (27%), Gaps = 31/358 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D+ + +G ++ + I+ + +T I Sbjct: 416 YVVFDIETTGFSKVRDKIIEISGFKI-KNNIVIDQFYSL---VNPEIDLPENIYLLTKIK 471 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F NTC++ +N + N Sbjct: 472 NETLKNAPKIL-QVLPDFLKFIK--NTCLVAHNASFDVSFIFEKSKQLNISFPL------ 522 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D + + +++ F L+ LA ++ H AK D AT Sbjct: 523 ----LPVIDTLALSQYYFSSFMKF---------FSLKRLAAKFKVKLEEHHRAKDDAKAT 569 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + I ++ Y + L T ++V N + A Sbjct: 570 TEIFMKILNLLENEYKVFTFYDLGD---TLSSKYERTYDINVLVSNQIGYRNLFKVLSDA 626 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 + S + + L L + K + + Sbjct: 627 LTNNFYKKPRVLK-SVLHQYREGLLIGSGCYNGNVFEIALNDDLESLKKAISFYDYIEVQ 685 Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361 P +E K + L ++++ + A + Y + + ++Y Sbjct: 686 PPQSYNHLIYELGIEGKKIIEQTILKIIQESKKQKKIIIASGDVHYLHPYEKIYREIY 743 >gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III, epsilon subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 1435 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 24/194 (12%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I D ET G V + R Q A D + + F KP +P Sbjct: 2 YLIVDTETTGLPVNYNFPISNTENWPRVVQIAWQLHDFSGNLV-EFKNFIIKPDHYDIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A I GIT + A ++G + + F + +N+ FD F+R Sbjct: 61 -NAFKIHGITNEIAEKNGEDLIFVLKEFKKSFEKSK--YLIGHNLEFDIKVIECEFFRK- 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D +V + ++ +KL G + ++ Sbjct: 117 ---KEQISFKRKKILDTKEVSVSYCQLPGIRKKFKWPTLTELYYKL------FGTKLSHS 167 Query: 175 HDAKADVYATLALV 188 H+A DV AT Sbjct: 168 HNAANDVKATARCF 181 >gi|290343478|ref|YP_003494845.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1] gi|260160893|emb|CAY39593.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1] Length = 446 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 62/207 (29%), Gaps = 33/207 (15%) Query: 5 FVIYDYETFGRDV-----------ALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +V +D ET G D R + V+ + +I++ + Sbjct: 8 YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFN----RIIKPI 63 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 A I GIT + A GV + +F I+ +N FD+ + Sbjct: 64 GYQVGATHIHGITHEYAEEHGVPFKTAFQEFIEFIGDR-CNILCAHNSLFDEGIIGHELL 122 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R D + D LD ++ S +K G E Sbjct: 123 RIGLDPNK----------DFLDKYIFNCTHEMYKKRFLSSIKLTNLYK-----DIFGKEF 167 Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198 NAH++ AD A + + + Sbjct: 168 DNAHNSLADARACGQVYPYLMGNTKRE 194 >gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC BAA-798] Length = 960 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 79/293 (26%), Gaps = 40/293 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G D D Q V+ + + +TGI Sbjct: 7 FVALDLEMTGHDPEQDEIIQIGAVKFTQT-RVLGRWGTL---VRPKVKLPFRIARLTGIN 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + V ++ F I ++I D + Sbjct: 63 PNDLNKAPV-FDAVKDKLRSFVGDH---PIVGHSIGNDLSFLAKQGLALDNP-------- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D ++ ++ LQ +A A G+ N HDA AD T Sbjct: 111 ---SLDTWELAML-------------LMPSLNAYSLQGVASALGVSVDNHHDALADAEIT 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN-MTPLVHVSGMFGASRSNTALIAPV 243 + + + +L L + ++ L A+R + + + + Sbjct: 155 RQVFLGLLARLRRLNPKLVTQVIRLTDNVDWPMKMVFQTLYEEVWQSQAARPSGNIGSLL 214 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQ-------DLDSVQLAKRLFTSHDELKGLVP 289 A ++ + LS R + + +F+ EL P Sbjct: 215 ASKGITEEDITSNLLSEPPRPSPLQPKEVTEYLDESYIESIFSPGGELSKTFP 267 >gi|163839979|ref|YP_001624384.1| DNA polymerase III subunit epsilon [Renibacterium salmoninarum ATCC 33209] gi|162953455|gb|ABY22970.1| DNA polymerase III, epsilon chain [Renibacterium salmoninarum ATCC 33209] Length = 228 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 26/194 (13%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GRD R + V VD + +ES E I GI+ + Sbjct: 12 FDVETTGRDPRQARLVSASIVLVDANNDVVESHEWLA---DPGVEIPEAVTLIHGISTAR 68 Query: 68 ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A +G E ++ + +F+ T ++ +N +D R + Sbjct: 69 ARAEGAPIGAVVTEVAQVLRSYFA-AGTPVMAFNAP-YDFTVLAAECARIGVSAPTAFPV 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + I ++AH + AD A Sbjct: 127 IDPFVLDKQ-----------------VDGFRRGKRTLVAICEHYNIPLIDAHTSAADALA 169 Query: 184 TLALVWLIREKKPK 197 T+ L + + P+ Sbjct: 170 TIKLAEALARRFPE 183 >gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6] gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6] Length = 816 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + + ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDHYTS---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T ++ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDKRLAQAP-DFSQVARKIFDLVKDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178 >gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893] gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893] Length = 236 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 25/204 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + A D V + + + ++ +P D E V I GI Sbjct: 41 LIVLDLETTGLNPAKDNVIAIGAVAIRHNAIDLSDQFDLILRRPELDIS---ETVLIHGI 97 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + E + N I + FD + + + +W Sbjct: 98 GPEALTQGHETE----DALLHLLEWMNGDPILAYHSAFDQKFLEKALKQTLGYTQPHTW- 152 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+ +++ A Y S G + L + A +E H A AD Sbjct: 153 -----LDVAEMLPAYYPNSKTGGK-----------GLDNWADFFDLEVSARHHAAADAMV 196 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 T L + K K N Sbjct: 197 TAELTLAVINKAQKNGVVSLRDFN 220 >gi|307300662|ref|ZP_07580437.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti BL225C] gi|306904196|gb|EFN34781.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti BL225C] Length = 325 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 61/218 (27%), Gaps = 33/218 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G D + V + + E + ++ P+ +TGI Sbjct: 71 VILDTETTGLDARKCEIIEIGLVSFTYNEEGEIGDVVAIYGGLQQPTIAIPPDITRLTGI 130 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A + +I +N FD + Sbjct: 131 TDAMVAGQSIDIAAVQAIV------GPADLIIAHNAGFDRPFCEAFSD------------ 172 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L +G H H A D +A Sbjct: 173 -----------VFVRKAWACSVSEIDWSGRGFEGTKLGYLIGQSGYFHDG-HRAVDDCFA 220 Query: 184 TLALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ F LY ++++R + Sbjct: 221 LLEVLEQSSGGAALPPFAELYKTSQRSRVRIFAENAPF 258 >gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC 19061] gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus nematophila ATCC 19061] Length = 249 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F + L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGRH--FHIYIKPERLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A+ + +F I +N FD + F + D Sbjct: 66 HGISDEFLQDKPL-FADIADEFIEFIRGAELII---HNATFDIGFMDYEFSKLNRDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R ++ L L I++ H A Sbjct: 122 --ADFCTITDSLMLARKLFPG--------------KRNNLDALCDRYHIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 LDAEILSDVYLAMTGGQTS 184 >gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae NCTC 13129] gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae] Length = 448 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 28/204 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63 FV D ET + Q +V R +E+ + + C P D EA + I GI Sbjct: 105 FVAVDVETT--NSDWGSICQIGAAKV-RDGHVVET-KEWLCTPPGDLNSFDEANIAIHGI 160 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE + F + +N +FD Sbjct: 161 TADMVATAP-SFAECYDQFADF---AGDLPLAAHNAQFDMTAFLRATQAA---------- 206 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+ F + + KL ++ +E N H+A AD A Sbjct: 207 ---------DIRLRTTNFGCSLAAARAAHLPIANHKLPTVSQHLHVELRNHHNACADAEA 257 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 ++ + ++ N Sbjct: 258 CAGILIALTQRLNTEITDFTSAFN 281 >gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 243 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 55/221 (24%), Gaps = 40/221 (18%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + E F EA + GI Sbjct: 4 IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPQRSMPHEAFGVHGIG 60 Query: 65 PQKAL------------RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P +D + AE + F + +N FD + Sbjct: 61 PDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFVRDSK---MVIHNASFDMKFLNAELGW 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 D L + R + SP L L GI++ Sbjct: 118 MNLPQLPMDQA-----IDTLAMARKRFPGSPAT--------------LDALCRRFGIDNS 158 Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 N H A D + + + F Sbjct: 159 NRTLHGALLDSEILADVYLELIGGRQPDFGLSAQSSGGQNA 199 >gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] Length = 829 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 29/192 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V+ D E + + Q V + E I+ D +TG Sbjct: 6 DRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ ++ + +I + I +N++FD + + Sbjct: 61 LTDQRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + R D +++ + +Y + L L GIE +AH A +D Sbjct: 110 ELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHTALSDAQ 156 Query: 183 ATLALVWLIREK 194 AT L+ +R+K Sbjct: 157 ATAELLLYMRQK 168 >gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84] gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7] Length = 822 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +N + + D E G + Q V V E I+S L D +T Sbjct: 10 SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + + + I+ I +N++FD + Y+ Sbjct: 65 GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 118 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L +LA + AH A +D Sbjct: 119 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 160 Query: 182 YATLALVWLIREK 194 AT L+ I+EK Sbjct: 161 MATARLLIKIQEK 173 >gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] Length = 235 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 70/246 (28%), Gaps = 34/246 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 +I D ET GRD+ R + E I+ F C DP A I Sbjct: 4 IILDTETTGRDINNGHRIIEIGC------LELIDRQLTKRQFHCYLNPGRDSDPGAFAIH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + + V + + F I +N FD + + + Sbjct: 58 GLSTEFLMDKPV-FTTIADELLNFIKDSQLII---HNAPFDLAFLEYELTLTKKKYKKMT 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + D L + R ++ + L L I+H H A Sbjct: 114 --DYCQILDSLLLARQLHPGQRN--------------SLDALCKRYNIDHSKRDKHGALL 157 Query: 180 DVYATLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 D + + + LF + + +K + + + A ++ Sbjct: 158 DAELLARVYLAMTGGQTHLFNEPKPLTIQTHARQKKTTEATTLPIIYATCEELTAHKNYL 217 Query: 238 ALIAPV 243 I + Sbjct: 218 NHIYSL 223 >gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1] gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum PM1] Length = 234 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 28/200 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ + D ET G DR + V + S + +AV Sbjct: 1 MSRQ-IFLDTETTGLSPENGDRIIEIGCV---EMLSRRLSGNNRHFYLNPERRNHEDAVK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I G+T + A + + ++ + I +N FD + R + Sbjct: 57 IHGLTDEFLADKPK-FAVVADELMEYLAGAEIII---HNAAFDVGFLDAELKRLQRPRFA 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + D L + R ++ S L L +++ + H A Sbjct: 113 EQV---GAVTDSLTMAREMFPG--------------KSNSLDALCKRLEVDNASRTLHGA 155 Query: 178 KADVYATLALVWLIREKKPK 197 D + + + Sbjct: 156 LLDAGLLAEVYIRMTRGQNS 175 >gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] Length = 287 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFVDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 127 TYEDTLNAPSTH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|260777448|ref|ZP_05886342.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260607114|gb|EEX33388.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 239 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 12/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G D D V + I + +P E+V I GI Sbjct: 48 TFLAMDFETTGLDSEQDDIITIGTVPFNLNRIFINQAHHWTVRPR--QQLAEESVIIHGI 105 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L +E ++ + + I+ + R + + + Sbjct: 106 THSDILDAP-DLSEVYDQVLEQMA---GKIMVVHYQRIEREFFDRALKDRINEGIE---- 157 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + GI S +L G+ H A D A Sbjct: 158 --FPVVDTMHLETLYQQRLHGGILNKVLGKKPDSVRLGASRARYGLPPYTPHHALTDAVA 215 Query: 184 TLALVWLIREKKPK 197 T L+ + Sbjct: 216 TAELLQAQIAYHYE 229 >gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] Length = 243 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 52/198 (26%), Gaps = 30/198 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + +E + + + +N FD + F + + Sbjct: 66 HGIADEFLADKPA-FSEIADEFLDYIRGAE---LVIHNAPFDIGFMDYEFSKLNRGIEKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLALARRMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKP 196 D + + + Sbjct: 166 LDAEILAEVFLTMTGGQT 183 >gi|126668711|ref|ZP_01739661.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126626811|gb|EAZ97458.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 294 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 9/143 (6%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGI 63 I D ET G A D+ + V+V + E + ITGI Sbjct: 51 ILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDPGIPIPAVITEITGI 110 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E ++ + II +N FD + ++ + S+ Sbjct: 111 TDDMVAGRRLDEGALAQAL------AGDGIILAHNSSFDRGFFEKRLPQHAGRRWACSFQ 164 Query: 124 NGNSRWDLLDVMRAIYAFSPDGI 146 + R + + Y G Sbjct: 165 GVSWRALGFESSKLEYLLLKSGY 187 >gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Paenibacillus larvae subsp. larvae BRL-230010] Length = 816 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET D Q V +D ++ + +TGI Sbjct: 7 KFAVLDFETT-GTSTTDTIIQVGLVIIDE-FDITDRYTSL---VNPGVRIPSSITSLTGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + VE + ++ S C++ ++ FD + + + Y + Sbjct: 62 TDEMVENAPSVE-KVMADLYPLLSD---CVLVAHHASFDHAFLQRSLTKAGYPPF----- 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +D +R + SF+L + GIEH N H A D Sbjct: 113 -TGRVLDTIDALRVAF-------------PSLGSFQLGHVCSLFGIEHENPHQANCDAQV 158 Query: 184 TLALVWLIREK 194 T L I +K Sbjct: 159 TAELWIRIMQK 169 >gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605] gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605] Length = 280 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 29/193 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G D D+ + + D + + + F A I I Sbjct: 50 TLLIIDTETSGLDPQQDQCLELGCILFDVPSRSVLAQQSFLLPVD-----SNAAEPINRI 104 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P R E + ++ +N FD + Sbjct: 105 -PAAVTRRPQPWREALVWFEHLLDAAD--LLVAHNAAFDRQWFG---------------- 145 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + + D I+WP+ ++DLALA G+ AH A +D Sbjct: 146 -----LGVVPATATPWLCTMDDIRWPAERQLRLRPSVRDLALAYGVPVWAAHRALSDCIY 200 Query: 184 TLALVWLIREKKP 196 + + + Sbjct: 201 IADVFARCDDLEH 213 >gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont] Length = 237 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 51/199 (25%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + A+ + + + +N FD + F D + Sbjct: 66 HGIADEFLADKP-TFAQIADEFLDYIRGAE---LVIHNASFDIGFMDYEFAMLQRDIGKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D + S+ L L I++ H A Sbjct: 122 E----------------TFCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPK 197 D + + + Sbjct: 166 LDAGILAEVFLTMTGCQTS 184 >gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 205 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 19/188 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D+ D+ + ++ E +S EV + + + D +AV + G+ Sbjct: 18 FVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEVLVRQ---EKVGDRDAVSVHGL 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + G+ E + ++ + FD + +++F Sbjct: 75 LRKDIA-SGIDEKSAVTAFLDYI---GNSVLVAQHAGFDITMVNRVLWKHFGIRLFN--- 127 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D++D A + + + A ++L +L I + H + D Y Sbjct: 128 ------DVVDTASL--AKRLEKGPYYNLAHKAGEYRLDNLCERYNIRLHDRHTSAGDAYL 179 Query: 184 TLALVWLI 191 T L + Sbjct: 180 TAQLFQRL 187 >gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 278 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 29/200 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + +D ET G ++ R + A +R +++ + DP+A I G+ Sbjct: 15 LIFFDVETTGLEIQAGHRICEVAMLR-WEHGQEVGRINTL---INPERELDPQAAQINGL 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + + ++ Q + +N+ FD+ + R Y + Sbjct: 71 QPAELNNAPL-FTDIAPQVVQL---SQNAVRIAHNLPFDESFLNMELCRAGYPPF----- 121 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + S L LA G+ H A DV Sbjct: 122 -TGPALDTLELARRLGI-------------RRGSLSLAALATTFGLP-APTHRAMDDVLT 166 Query: 184 TLALVWLIREKKPKLFEYLY 203 AL + Sbjct: 167 LRALFDHFVNEMISFGIITL 186 >gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] Length = 816 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ ++ ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLVQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P+ + + L L GI +AH A +D Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L+ +REK +L + L + Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178 >gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 821 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D E Q V ++ + E ++S + +T Sbjct: 6 SQKYAVIDLEATSPGPTAS-IIQVGIVIIEGK-EIVDSYQT---DVNPHEPLSDHIKALT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + ++ +R I + C+ +N+ FD + YD Sbjct: 61 GITDQQLAQAP-DFSQVARTIFELIED---CVFVAHNVTFDANLLAEALFLEGYDLLT-- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L L+ + +AH A AD Sbjct: 115 -----PRVDTVELAQIFYPCLE-------------KYSLSHLSEVLDLNLSDAHTAIADA 156 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L + K L + Sbjct: 157 QATANLFIKLLHKIESLPRECLET 180 >gi|217980123|ref|YP_002364173.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] gi|217508294|gb|ACK55079.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 201 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 16/186 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G + A + D + T V P EA I GIT Sbjct: 23 LILDTETTGLG-DDAEVVELAVI--DCAGAVLLDTLVRPSGPVP-----AEAAAIHGITD 74 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +E R ++ YN+ S+ Sbjct: 75 AMLAGAP-TWSELHARFCGLVE--GRQVVIYNHEFDVRVISQTARRYGLQAP-----QGF 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + D + A+ A++ +W + KL A G+ NAH A D TL Sbjct: 127 DQVLDPGRIHCAMQAYAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVENAHRALGDCLMTL 186 Query: 186 ALVWLI 191 +V + Sbjct: 187 GVVRAM 192 >gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] Length = 300 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 29/193 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D+ET G + + + V+ E ++ E+F +TGIT Sbjct: 35 LIAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAY---PGTPIPVRIQELTGIT 91 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ ++ I +N + + + Sbjct: 92 DEMVTGCEPPLF-VWKKFLD-WADGANTFIAHNAPFEARFVRALYEKEGEMPNIYF---- 145 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R +R +S+ L++L + H A AD A Sbjct: 146 ----IDTLQISR-------------NRLPEESSYSLKNLVK---FKEGEPHRALADAKAC 185 Query: 185 LALVWLIREKKPK 197 L + Sbjct: 186 STLYCRLASTYRN 198 >gi|295400147|ref|ZP_06810127.1| Exonuclease RNase T and DNA polymerase III [Geobacillus thermoglucosidasius C56-YS93] gi|294977926|gb|EFG53524.1| Exonuclease RNase T and DNA polymerase III [Geobacillus thermoglucosidasius C56-YS93] Length = 245 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 61/218 (27%), Gaps = 40/218 (18%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+I D ET G D A + R E+ C + P +TG Sbjct: 63 TFMIIDMETTGFSPQHGDEILAMAAAKTVR-GAVKETYYTLVC---PEKAIPPHISALTG 118 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + E R F S +IGY+ + + + YR W Sbjct: 119 ITAKDVQYAPRLH-EALRSFLSFIS--GGVMIGYHIGHDLAFLNHF-----LWTHYRTKW 170 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + M F L D GI H A DV+ Sbjct: 171 AARFFDMQPIVEMVQRRWF----------------PTLDDALGHYGISCERRHTADGDVW 214 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 A L + L +N + L D+ + Sbjct: 215 AMAEL-----------WAQLLAELKRNNIETLYDLYSA 241 >gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] Length = 555 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 24/187 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ +D ET + A QF V + ++ ES P+ P I Sbjct: 220 PPSFIAFDVET--ANEANGSICQFGVVVY-HEGKEAESHTWLCQPPSAWPDFTPATTAIH 276 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP K + + ++ N I+ +N Sbjct: 277 GITPDKVANEPSCH-DRLEQLAALLRKENLPIVAHNAKFDMVALRDAA------------ 323 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R + +D+ +A + + + ++KL +A + G E + HDA AD Sbjct: 324 ------RAEKVDIPHITFACTYLLAR--ALHPELPNYKLTTVAQSAGSEAFHHHDALADA 375 Query: 182 YATLALV 188 A ++ Sbjct: 376 RACGEIM 382 >gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] Length = 232 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 28/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G + DR + V ++E+ + + EA + G++ Sbjct: 4 IVFDTETTGFKFSEGDRLVEIGCV---ELVNRVETGRTYHAYFNPERSMPAEAQAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V F+ + +F + +N FD + + Sbjct: 61 DAFLKDKPV----FAEGVAEFLDFIGDAPLIAHNATFDFGFINGELGALGFPHVCEK--- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R+ + + L L GI+ H H A D Sbjct: 114 -TRMVDTLAIARSKHPGA--------------KHTLDALCSRYGIDRSHRVLHGALLDAQ 158 Query: 183 ATLALV 188 + Sbjct: 159 LLAQVY 164 >gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] Length = 233 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 22 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 78 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174 Query: 181 VYATLALVWLIREKKPK 197 Y T L ++ Sbjct: 175 AYLTAGLYLHQQDVAKP 191 >gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 671 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 8/113 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G +R + V+V R + I++ + +TGI+ Sbjct: 567 YSVVDIETTGGLKGGNRITEIGIVKV-RHGKVIDTWTSL---VNPERHIPGFITSLTGIS 622 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V F+ + I +N+ FD + + + Sbjct: 623 DSMVYNAPV----FADIVKPLLDKLAGSIFVAHNVNFDYGFIKKECEVAGHFF 671 >gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] Length = 247 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 59/214 (27%), Gaps = 30/214 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + V AE + +F + +N FD + F + Sbjct: 66 HGISDEFLQDKPV-FAEIADEFLEFIRGAE---LVIHNAPFDIGFMDYEFRKLNKGIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R ++ L L I++ H A Sbjct: 122 --QDFCTITDSLVLARKLFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 D + + + L + N+ Sbjct: 166 LDAEILSDVYLAMTGGQTSLSFSMDSESANNEQE 199 >gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] Length = 196 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 27/203 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V+ D ET G + + V+++ + + ITG Sbjct: 10 DIYVVLDIETTGLNPDEHEIIEIFAFLVEKE-RITKQFHRL---INPGFFIPRRITEITG 65 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + VE I+ F + II +N++FD + + + Sbjct: 66 ITNAMLVGQPKVE----GIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPN 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 S+KL +A I++ H AK D Sbjct: 122 -------------------ICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDAL 162 Query: 183 ATLALVWLIREKKPKLFEYLYDY 205 T + + + + ++ Y Sbjct: 163 LTYNIFNKLMDIIRRQYKKELSY 185 >gi|312868848|ref|ZP_07729034.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris PB013-T2-3] gi|311095588|gb|EFQ53846.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris PB013-T2-3] Length = 282 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFITG 62 FV D ET G + + + V+ T F+ K + +TG Sbjct: 113 FVSLDLETSGLNPSSAQIISIGAVK-----RVAGHTTTFYRLVKLESGKKVPVDIARMTG 167 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++ +GV+ E + F I+GYN + FD+ + + R Sbjct: 168 LNNERLAAEGVLVKEALIDLQAFTK--GLPIVGYNLL-FDERFLQTAVIRTGI------V 218 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D+L ++ F + + L + G+++ H++ AD Sbjct: 219 QFNNKMVDVLPYVKTTDKFCDN-------------YHLTTVLAKYGVKNEQPHNSLADAT 265 Query: 183 ATLAL 187 AT+ L Sbjct: 266 ATMEL 270 >gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium pseudotuberculosis FRC41] gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium pseudotuberculosis FRC41] gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis C231] gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis 1002] gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis I19] Length = 232 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 66/233 (28%), Gaps = 38/233 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A VR+D EA + GIT + Sbjct: 19 FDLETTSANPHEARIVSSALVRIDSNGAHPRELLA-----DPGIEIPEEAAKVHGITTEY 73 Query: 68 ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A G E + I Q ++ T I+ Y ++D Sbjct: 74 AREHGRPHEEVLKETIAAIQQAWADGFTLIV-----------------------YNAAYD 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D + F P I L DL + NAH+A +D A Sbjct: 111 LTVLRKLTGDFVVTGPVFDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDNAHEATSDALA 170 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 + W+ + + ++ L +L+ Q + + + Sbjct: 171 AARIAWMQAK------RNFKEELSQKSLNELMQFQAVEYYEFQTKLKNYFEGK 217 >gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX] gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 590 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%) Query: 14 GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGV 73 G A + VR+ R + ++ +TGIT Sbjct: 57 GTHPATAALIEVGAVRL-RDGQVLDEFTTL---VNPHAPVPASITLLTGITTAMVESA-P 111 Query: 74 VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133 A F ++ +N FD + + R+ + D L Sbjct: 112 SPAAALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACARHGIPWP------SPAVLDTLQ 165 Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193 + R + + +L LA G H AH A D AT ++ + Sbjct: 166 LARRLVP-----------RGEVRNHRLDTLARVFG-AHPPAHRALDDARATADVLRGLVG 213 Query: 194 KKP----KLFEYLYDYRN 207 + +E L +R+ Sbjct: 214 RLRARGVDTWEELRAFRS 231 >gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 248 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 57/215 (26%), Gaps = 30/215 (13%) Query: 7 IYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D ET G + + V V F + EA+ + Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKVH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + V AE + +F I +N FD + F + Sbjct: 59 GITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 S D L V R +Y L L GI++ H A Sbjct: 114 -AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGALL 158 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + ++ + L N + L Sbjct: 159 DAEILADVFLMMTGGQLALLGEEDASANHENIADL 193 >gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] Length = 247 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G DR + V V E+ + P D P+A+ + G+T Sbjct: 4 IVLDTETTGLYANNGDRIIEIGCVEV-LSRHVTENHFHQYINPERDS--HPDALAVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++ + I +N FD + R Sbjct: 61 TEFLSDKPK-FAEIAQAFCDYIRGAELII---HNAPFDIGFLNAELARLGMP-------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + I D + L L I H H A D Sbjct: 109 ---------KVEEIAECITDSLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLAEVYLAMTRGQET 174 >gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68] Length = 822 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +N + + D E G + Q V V E I+S L D +T Sbjct: 10 SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + + + I+ I +N++FD + Y+ Sbjct: 65 GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 118 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L +LA + AH A +D Sbjct: 119 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 160 Query: 182 YATLALVWLIREK 194 AT L+ I+EK Sbjct: 161 MATARLLIKIQEK 173 >gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii PYR-1] gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 69/253 (27%), Gaps = 32/253 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + + + + P P + G+T + Sbjct: 22 VVDVETSGFRPGQARIVSVAALALSDDGNV---EKSLYSLLDPGVDPGP--THVHGLTAE 76 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 F + V + +N+ FD + + + Sbjct: 77 MLAGQPA----FGDVVGDLIEVLRGRTLVAHNVGFDYSFLTAEAEMVHAELPVDT----- 127 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 ++ + +L+ LA G+ + HDA D Sbjct: 128 ----VMCTVELARRLDLGLDN----------LRLETLAAHWGVTQMKPHDALDDAMVLAQ 173 Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ L+R ++ + + ++ + I PL ++ + VA Sbjct: 174 ILKPVLVRAQERRKWLPVHPVSRRTWPNGRITHDEFRPLKALAARMP--CAYANPGVFVA 231 Query: 245 WHPRYKDSVIGCN 257 P + + + Sbjct: 232 GRPLVQGMRVALS 244 >gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] Length = 229 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D DR + V ++ + E F + P A + G++ Sbjct: 4 IVFDTETTGLDPKTGDRMVEIGCV---ELMNRVPTGETFHAYYNPERDMPPAAEEVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + +F + +N FD + + + Sbjct: 61 AAFLSDKPL-FRDTADALLEFL---GDAPLVAHNAGFDFGFLNTE-----LELIEREAIS 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D + + R + + L L G++ H H A D Sbjct: 112 LDRMVDTVQIARKKHPGA--------------KVSLDALCSRYGVDRSHRVKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAQVY 163 >gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] Length = 822 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +N + + D E G + Q V V E I+S L D +T Sbjct: 10 SNRYAVVDLEATGTGTDA-KIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + + + I+ I +N++FD + Y+ Sbjct: 65 GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 118 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L +LA + AH A +D Sbjct: 119 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 160 Query: 182 YATLALVWLIREK 194 AT L+ I+EK Sbjct: 161 LATARLLIKIQEK 173 >gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238] Length = 243 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 61/208 (29%), Gaps = 39/208 (18%) Query: 2 TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYL 52 N ++ D ET G + R + V E I F D L Sbjct: 8 PNRIIVLDTETTGMNLSGGPIYEGHRIIEIGAV------EIINRKLTGNHFHVYIKPDRL 61 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 D EA+ + GIT + G E + IH +F + + +N FD + F Sbjct: 62 IDLEAIDVHGITDEFL--YGKPEY---KDIHDEFLAFIKGAELVAHNAPFDVGFMDYEF- 115 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE- 170 S+ + L Y D + + L L GI+ Sbjct: 116 ---------------SKLNKLIGTTDQYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDN 160 Query: 171 -HVNAHDAKADVYATLALVWLIREKKPK 197 H H A D + L+ + Sbjct: 161 SHRTLHGALLDAEILADVYLLMTGGQTS 188 >gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi] gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi] Length = 302 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 77/250 (30%), Gaps = 41/250 (16%) Query: 1 MTNHF-------------------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE 41 M N++ V+ D E + + R + A R+ I S Sbjct: 58 MMNNYSTSSSSTSTTPLFSPRYNVVVLDIEGTSTNTSYCRMIEVACARI-VDGTSISSFT 116 Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 DY+P+P IT IT + +++ F S + ++G+N RF Sbjct: 117 SL-VNADIDYIPEP-VQEITKITKAMIDLSPPPQI-VLSQLYNFLSSQPSLVVGHNV-RF 172 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D N F R + + L + Q G +KL Sbjct: 173 DASVIYNEFVRYKIINNEVHKPDDFISHSLFTNTLCTLKLARRLFQ------GQPDYKLG 226 Query: 162 DLALANGIEHV-NAHDAKADVYATLALVWLIREKK----------PKLFEYLYDYRNKNQ 210 +L G+ NAH A ADV T L I + F Sbjct: 227 NLVENLGLGRSINAHRAHADVSMTTLLWRRIYRESFERLGGEIYPDHEFFLKLQETPAKD 286 Query: 211 LRKLIDIQNM 220 +RK I++ M Sbjct: 287 VRKFIEMYKM 296 >gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 235 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + + D V + + + ++ +P D E V I GI Sbjct: 41 LIVLDLETTGLNPSKDEVIAIGAVAIRGGIIHLGDQFDLILRRPELDIR---ETVLIHGI 97 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + E + N I + FD + + +W Sbjct: 98 GPEALTQG----HEIEDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKAQLGYTQPHTW- 152 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+ D+M A + + G + L + A G+E H A +D A Sbjct: 153 -----MDVADLMPAFFPNTKTGGK-----------GLDNWADYFGLEVSERHHAASDALA 196 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L + K Sbjct: 197 TAELTLVALNKARSEGVKTLK 217 >gi|269966452|ref|ZP_06180536.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|269828909|gb|EEZ83159.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 248 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61 FV D+ET G + D V I+ + + + E+V I Sbjct: 58 FVSVDFETTGLNSEEDVILTIGLVPF-----TIDRVQCNGSAHWVVNPNRELNHESVIIH 112 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + ++ I S ++ + + + N + + + Sbjct: 113 GITDSEVKNAPQ-LSQILGEILDALS---GKVVLVHYKNIERQFFNNALLNSIGEGIQ-- 166 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D LD+ AI G + S +L G+ H A D Sbjct: 167 ----FPVVDTLDIEYAIQRRECRGFINKLKGKKPGSVRLGYARERYGLPAYQPHHALTDA 222 Query: 182 YATLALVWLIREKK 195 AT L + Sbjct: 223 LATAELFQAQLQYH 236 >gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c] gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c] Length = 239 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 32/203 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G + + +R + V E ++ F D + A +T Sbjct: 8 IVLDTETTGLEWSKGNRIVEIGAV------ELLDRRLSGDKFHRYLKPDVSFESGAQEVT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + EFS +F + N + +N FD + R S Sbjct: 62 GLTMEFLADKP----EFSMIADEFLAYINGAELIIHNAAFDLGFLDYELSRLG--SQYGK 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 + S D L + R Y + L L G++ H H A Sbjct: 116 ITDRASVLDTLVMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALL 161 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D + + + ++ L Sbjct: 162 DAQILADVYIALTSGQEEIGFAL 184 >gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] Length = 225 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I EK L + L + + V N LI Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1] gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1] Length = 222 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + I+ T F +P L PEA+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L +A G+E A Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACIAAGMEFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTQQTATLFCELVNR 200 >gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB] gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB] Length = 222 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + I+ T F +P L PEA+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L +A G+E A Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACIAAGMEFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTQQTATLFCELVNR 200 >gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045] gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045] Length = 251 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 16/193 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R V R E + + +A+ + GIT ++ Sbjct: 11 FDLETTGTDPYEARIVT-GAVIEVRDGEPLGHRQWLA---DPGVEIPEDAIAVHGITNER 66 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G + I + + + N FD R+ S Sbjct: 67 ATAEGTPPDRVAESIAEVLTGYWRAGVPVVAYNAAFDLTLLGAELRRHGLPSL------- 119 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R D D + ++ D L+ + G+ AHDA AD A Sbjct: 120 RERLDGADPAPVVDPYTIDRR---VDRYRRGKRNLEAVCGEYGVVLGTAHDATADAVAAA 176 Query: 186 ALVWLIREKKPKL 198 L I E+ PK+ Sbjct: 177 RLTRAIAERHPKI 189 >gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] Length = 240 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 28/198 (14%) Query: 6 VIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +++D ET G + + + V + + + D D EA+ Sbjct: 10 IVFDTETTGMNQGAGPHYLGHKLIEIGCVEL-INRKPTGR--TYHVYIQPDRPVDEEAIQ 66 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + + E + +F + +N FD + F Sbjct: 67 VHGITDEFLVGKPR-FGEIAEEFFEFIRGAE---LIAHNANFDIGFIDYEFEMLGR---F 119 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177 ++ S D L + R +R + + L L GI+ H H A Sbjct: 120 GKLEDHCSLVDTLQLAREKK----------NRGEIQGNLNLDALCRFYGIDNSHRTLHGA 169 Query: 178 KADVYATLALVWLIREKK 195 D + + + Sbjct: 170 LLDAEILADVFLYMTGGQ 187 >gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 453 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 77/231 (33%), Gaps = 29/231 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E G V + A R D Q ++ DP +T IT Sbjct: 2 FAILDIEATGGKVGEESIIDIAIFRYDGQ-TTVDQFISL---VNPMRKIDPFVQKLTNIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L E ++RI + CI+ +N++FD R F + YD + Sbjct: 58 DKMVLTAPKFH-EIAKRIVEITED---CILVGHNVKFDYRMLRQEFKKLGYDYEK----- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D P+ S+ L L A GI + H A D AT Sbjct: 109 -----DWIDTFEFAQKLIPNME----------SYSLGKLTNALGIPITDRHRASGDARAT 153 Query: 185 LALVWLIREKKPKLFEYLYD-YRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 L L L+R+K + R + ++++ + +R Sbjct: 154 LKLFQLLRDKDSEKIIQKKSGLRTEKKVKEKYQKLLENLPTKTGLFYFYNR 204 >gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109] gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109] Length = 297 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 29/193 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G D D+ + + D + + + F A I I Sbjct: 67 TLLIIDTETSGLDPLQDQCLELGCILFDVPSRSVLAQQSFLLPVD-----SNAAEAINRI 121 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P R E + ++ +N FD + Sbjct: 122 -PAAVTRRPQPWREALVWFEHLLDAAD--LLVAHNAAFDRQWFG---------------- 162 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + + + I+WP+ + ++DLALA G+ AH A +D Sbjct: 163 -----LGVVPATATPWLCTMEDIRWPAERQLRSRPSVRDLALAYGVPVWAAHRALSDCIY 217 Query: 184 TLALVWLIREKKP 196 + + + Sbjct: 218 IAEVFARCDDLEQ 230 >gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] Length = 244 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 61/228 (26%), Gaps = 40/228 (17%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + E F + EA + GI Sbjct: 4 IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPERSMPAEAFGVHGIG 60 Query: 65 PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P + A+ + F I +N FD + R Sbjct: 61 PDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFVRDSKMII---HNASFDMKFLNYELER 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + D L + R + SP L L I++ Sbjct: 118 MGLAALPMDQA-----VDTLAIARKRFPGSPAT--------------LDALCRRFNIDNS 158 Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 N H A D + + + F K+ ++ D + Sbjct: 159 NRTLHGALLDSEILADVYLELIGGRQPDFGLSTAKSEKSSTVQVDDWR 206 >gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1] Length = 837 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +N + + D E G + Q V V E I+S L D +T Sbjct: 25 SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 79 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + + + I+ I +N++FD + Y+ Sbjct: 80 GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L +LA + AH A +D Sbjct: 134 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 175 Query: 182 YATLALVWLIREK 194 AT L+ I+EK Sbjct: 176 MATARLLIKIQEK 188 >gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Candidatus Puniceispirillum marinum IMCC1322] Length = 255 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 29/195 (14%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + R + + + + + D AV + G+T Sbjct: 4 IALDTETTGINPRDGHRIIEIGCL---ELLHHLPTGNKLHIYINPEREIDEGAVKVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + +F + + +N FD + R Sbjct: 61 SAFLADKPL----FADIVDEFLAFIGGDQMVIHNASFDMGFLNAELARLDRP-------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 +L + RA+ ++P L L I+ H + H A D Sbjct: 109 ------VLPMDRAVDTLMMARKKFPGAQAN-----LDALCRRFEIDNGHRDLHGALIDAD 157 Query: 183 ATLALVWLIREKKPK 197 ++ + K Sbjct: 158 LLASVYIELLGGKQP 172 >gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33] gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33] Length = 233 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 22 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 78 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDMLDQP 134 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + + +D R ++ S KL G + H A D Sbjct: 135 F------YCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 175 AYLTAGLYLHQQGVAKP 191 >gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis ATCC 49957] gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis ATCC 49957] Length = 304 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 36/187 (19%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D ET G D D + A + D + +PA PE +T Sbjct: 51 LVLDVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQPA--RPIPPEVTALT 108 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T E + I ++ +N FD ++ Sbjct: 109 GLTDAMVAGQSFTPEEVAAFI------GPAALVIAHNAGFDRRFAEA------------- 149 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 A ++ +G +L DLA +G+ H A D Sbjct: 150 ----------FCPDFAAKPWACSLHGVDWAAEGFEGRRLGDLAARHGLFFDG-HRAVHDC 198 Query: 182 YATLALV 188 ATL ++ Sbjct: 199 QATLEIL 205 >gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14] Length = 837 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +N + + D E G + Q V V E I+S L D +T Sbjct: 25 SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 79 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + + + I+ I +N++FD + Y+ Sbjct: 80 GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L +LA + AH A +D Sbjct: 134 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 175 Query: 182 YATLALVWLIREK 194 AT L+ I+EK Sbjct: 176 MATARLLIKIQEK 188 >gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] Length = 250 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 59/215 (27%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F + L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPERLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + ++ I +N FD + F + D Sbjct: 66 HGISDEFLEDCP-SFADIADEFLEYIRGAELII---HNASFDIGFMDYEFRKLNRDIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + RA++ L L I++ H A Sbjct: 122 E--TFCQITDSLAMARALFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + N Q + Sbjct: 166 LDAEILSDVYLAMTGGQTALAFSMEGESNNEQEQN 200 >gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 247 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 43/168 (25%), Gaps = 16/168 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A + V E A + GIT + Sbjct: 21 FDLETTGTDPREARIVTAAVIEVADG----ERRGHRTWLADPGIPIPAGATAVHGITDAR 76 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G + + + + + N FD R+ S G Sbjct: 77 AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLA-ERLGG 135 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++D + A S +L + G+ Sbjct: 136 APVGPVIDPLTVDRAV---------DRYRKGSRRLSAVCAEYGVTLEE 174 >gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 237 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 43/168 (25%), Gaps = 16/168 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A + V E A + GIT + Sbjct: 11 FDLETTGTDPREARIVTAAVIEVADG----ERRGHRTWLADPGIPIPAGATAVHGITDAR 66 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G + + + + + N FD R+ S G Sbjct: 67 AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLA-ERLGG 125 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++D + A S +L + G+ Sbjct: 126 APVGPVIDPLTVDRAV---------DRYRKGSRRLSAVCAEYGVTLEE 164 >gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] Length = 258 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 71/234 (30%), Gaps = 37/234 (15%) Query: 2 TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53 +N +V+ D ET G + R + V E I F + Sbjct: 5 SNRYVVLDTETTGMNKFGVHYEGHRIIEIGAV------EIINRRLTNNQFHVYLNPNRSV 58 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 D EA I GI+ Q + + + QF + +N FD + + Sbjct: 59 DSEAFAIHGISDQFLVDQP-CFLDIANDFLQFIR---GSTLVIHNASFDLGFLNFELHN- 113 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + ++ + D L + R I+ + L L I++ Sbjct: 114 -IYLNSRTVESYCTVIDSLKLARKIFPGQRN--------------SLDALCERYCIKNSK 158 Query: 174 A--HDAKADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLV 224 H+A D + ++ + + F + D + N L I N L Sbjct: 159 RILHNALIDAQLLAYVFLVMTGGQTRIQFMDMLDNSDTNILNNTITHDNKFELC 212 >gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma pneumoniae FH] Length = 1443 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 67/483 (13%), Positives = 148/483 (30%), Gaps = 48/483 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI+D ET G D +FAG++V ++E + F D IT I Sbjct: 407 TFVIFDIETTGLHGRYDSVIEFAGIKVKHN-REVERMQFF---LKIDGPLPAAVTEITKI 462 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + G+ + ++ + ++ +N + FD + + Sbjct: 463 TQAQLED-GMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQ-------------- 505 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 ++ ++ + + G S L ++ + + H A D Sbjct: 506 -----FEKYNIAPLTNPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDT 560 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN-----QLRKLIDIQNMTPLVHVSGMFGASRSN 236 A + +E+ + + ++ L T ++++ G ++ Sbjct: 561 QALKKVFDYFKEQVELMGITNLEQLDQELNQQCHFELLKRTFTNTGIIYIKSQSGFAKLY 620 Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296 L + + + V+ L + F D+ + + + IK V Sbjct: 621 ELLSIALTDNNATRPLVLTSTLQKFAKSFVITDNPVQGDIFKAALTKPLKELEAAIKRVD 680 Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356 +L+ + R G+ + + L+ ++ A+ + Y + Sbjct: 681 F----VLIAPPDAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAVASDAYFIHPWEN 736 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQL-STLNLPFSDRRLPELFFR--YRARN----FP 409 + + + EQ + + + L E+ F A Sbjct: 737 EYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLGEQLAYELVVKNT 796 Query: 410 HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQ 465 + L+++ D L + L IE L S + GD + + + E L+ Sbjct: 797 NKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTWSQAKAIYGDPLPKLIEQRIQEELK 856 Query: 466 WVI 468 +I Sbjct: 857 AII 859 >gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902] gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902] Length = 307 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 33/194 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP--EAVF 59 +I D ET G + + + D Q + + + F LP A Sbjct: 75 PRTLLILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFL-------LPAETNAAEP 127 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I I P R + + ++ +N FD + Sbjct: 128 INRI-PAAVTRLPQPWKQALLWFQNLLDAAD--VLVAHNAAFDRQWFGRGE--------- 175 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L + + S + ++WP+ + ++DLALA G+ AH A Sbjct: 176 ------------LPTVTQPWLCSMEDMRWPADRQLRSRPSVRDLALAYGVPVWAAHRALT 223 Query: 180 DVYATLALVWLIRE 193 D + + Sbjct: 224 DCIYLAEVFARCDD 237 >gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686] gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686] Length = 233 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 22 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 78 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARMGHRHGALED 174 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 175 AYLTAGLYLHQQGVAKP 191 >gi|262273303|ref|ZP_06051118.1| putative exonuclease [Grimontia hollisae CIP 101886] gi|262222676|gb|EEY73986.1| putative exonuclease [Grimontia hollisae CIP 101886] Length = 198 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 49/186 (26%), Gaps = 19/186 (10%) Query: 8 YDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G D +FA + D + + EA I GIT Sbjct: 28 IDTETTGL--GEDAEICEFAAI--DGRGNVL--INTL---IKPSKPIPAEATAIHGITND 78 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 E I + YN + + D D Sbjct: 79 MVETAP-TWLEVEGMIAGLLVSRP--VAIYNAEYDIRVIWQTSMISHGKDRAVP--DELE 133 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATL 185 + +M + + W KL A G+ NAH A AD TL Sbjct: 134 RSINATCIMLEYAEYRGE---WCDSRHQYRWHKLTAAAAHEGVTVEENAHRALADCRMTL 190 Query: 186 ALVWLI 191 L+ + Sbjct: 191 GLIKAM 196 >gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 61/242 (25%), Gaps = 48/242 (19%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63 FV+ D ET G R + A V V ++ + PEA + I Sbjct: 8 FVVIDTETTGLPPD-GRVVELALVEVGLDR----EPQIVYSALVDPGCPIPPEASAVHHI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + I+ +N FD R W Sbjct: 63 TDRDVAGKPR----LMQIWPKVMGYIGDAILVAHNAEFD---------RGMLPETGRPW- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181 + R D A Q L GI+ H A D Sbjct: 109 --------ICSKRLAQHLWRD----------APKHSNQVLRYWLGIDVEVGLPHRALGDA 150 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 T + + + + + LI +P+ + FG + Sbjct: 151 IVTAHVF-------QRELRAYLEAGYPDDVEALIAFAE-SPIEVQTMPFGKHKGMPLKDV 202 Query: 242 PV 243 P+ Sbjct: 203 PL 204 >gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 335 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A ++D + + P P V+I G+T Sbjct: 26 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTL---VNPQRDPGP--VWIHGLT 79 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + + ++ +N FD F R+ Sbjct: 80 RETLSDAPL-FPDIATAFAERL---DGRVLVAHNAAFDWSMIAREFARS----------- 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + KL+ LA G+ AH A D Sbjct: 125 --------KTEAPVRQRLCTIALSKELGLPLANHKLETLAAHYGVVQERAHHALDDARVL 176 Query: 185 LALVW 189 Sbjct: 177 AETFR 181 >gi|78779006|ref|YP_397118.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9312] gi|78712505|gb|ABB49682.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9312] Length = 259 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D + + D ++ + S F ++ EA + Sbjct: 36 EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPVNNN-----EAEHVNC 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + + I +N+ FD + Sbjct: 91 IS-AEVTNISQPWEDGLNFFLKLVDCSD--FIVAHNVEFDKKWFGKGR------------ 135 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L ++ + S D I W + T + DLAL+ I N H A +D + Sbjct: 136 ---------LPMLNKKWICSLDDINWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCF 186 Query: 183 ATLALVWLIRE 193 + Sbjct: 187 YISEVFKKCDN 197 >gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] Length = 253 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F + DPEA+ + Sbjct: 11 IVLDTETTGMNQLGAHYEGHCIIEIGAV---EMINRRYTGNNFHIYIKPNRPVDPEAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + +FS+ ++F + +N FD + F + Sbjct: 68 HGITDEMLADKP----DFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTN 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 124 ---DICQVTDTLTMARQMYPG--------------KKNNLDALCSRLGIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + + + LF+ Sbjct: 167 LDAEILADVYLAMTGGQTSLFDE 189 >gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 243 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 56/223 (25%), Gaps = 40/223 (17%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + E F + EA + GI Sbjct: 4 IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPERSMPHEAFGVHGIG 60 Query: 65 PQKAL------------RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P +D + AE + F + +N FD + Sbjct: 61 PDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFVRDSK---MVIHNASFDMKFLNAELGW 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 D L + R + SP L L I++ Sbjct: 118 MNLRQLPMEQA-----IDTLAMARKRFPGSPAT--------------LDALCRRFSIDNS 158 Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 N H A D + + + F + Sbjct: 159 NRTLHGALLDSEILADVYLELIGGRQPDFGLSTQSGSGQNAAD 201 >gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella adiacens ATCC 49175] gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella adiacens ATCC 49175] Length = 875 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 63/205 (30%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D ET G DR QF + + +E + E Sbjct: 1 MHRKYAVIDLETTGPKYEQGDRIFQFGCTLI-TDHKIVEH---ITLNINPEQSIPFEIQL 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG+T + E + I+ + +N+ FD + Sbjct: 57 LTGVTNADVEKAPY-FDEVAMNIYNLLE---GRTLVAHNVGFDGPFIITALKEALGIELE 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D + + + Y A S++L DL I H H A + Sbjct: 113 VPF------IDTVQLAQICY-------------PSAISYRLSDLTNMLKIPHTQVHTAGS 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D AT L +++EK + + Sbjct: 154 DARATAQLFLILQEKIRSFSKVTLE 178 >gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3] gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3] Length = 837 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +N + + D E G + Q V V E I+S L D +T Sbjct: 25 SNRYAVVDLEATGTGTDA-KIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 79 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + + + I+ I +N++FD + Y+ Sbjct: 80 GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L +LA + AH A +D Sbjct: 134 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 175 Query: 182 YATLALVWLIREK 194 AT L+ I+EK Sbjct: 176 MATARLLIKIQEK 188 >gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] Length = 256 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|66968596|ref|YP_245473.1| putative transposase [Pseudomonas aeruginosa] gi|66862678|emb|CAI46979.1| putative transposase [Pseudomonas aeruginosa] gi|112553494|gb|ABI20463.1| transposase [uncultured bacterium] Length = 275 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 24/191 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G + + D I T V +P EA I IT Sbjct: 87 IVLDTETTGLG-DDAEICEITIL--DVTGAPILDTLVRPTRP-----IPVEATAIHKITD 138 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E + + + ++ YN + ++ Sbjct: 139 AMVASAP-SWPEVAEQYAAAVA--GRTVVAYNVAFDARLLRQ-------------TYQIH 182 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L A+ ++ ++ D KL + A G+ AH A AD TL Sbjct: 183 GITAPVLTTACAMLMYAEWHGEYDRSRDRWRWLKLIEAATDCGVAEDGAHRALADARMTL 242 Query: 186 ALVWLIREKKP 196 ++ ++ + Sbjct: 243 GVLRYLQRRTN 253 >gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 272 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 30/201 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V +D ET G D+ R + A +RV + + D L DPEA + G Sbjct: 14 LVFFDLETTGLDLRAGHRVCELALLRVRGAAVE----DYLGSALRPDRLLDPEAAAVNGF 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + A + R+ + + ++ +N+ FD + R Sbjct: 70 QDAELRGAPR-FASVAGRVQRM---AHGAVLIAHNLPFDMAFLNAELARIGQPPLA---- 121 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D + R S+ L LA G+ H A ADV A Sbjct: 122 ----------------SVTLDTLVLARRLLRRPSYSLAALAEHFGLPR-PTHRALADVLA 164 Query: 184 TLALVWLIREKKPKLFEYLYD 204 + ++ +L Sbjct: 165 LRGVFAQLQLAMAELGVTTLQ 185 >gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] Length = 905 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + D Q V + + D P +T I Sbjct: 5 SFAVVDLETTGNQLEHDEIIQIGITFVRDN-KISGTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I++ CI +N+ FD + + F ++ Sbjct: 61 EETMLEQAPYFH-EIADDIYEQLKD---CIFVAHNVDFDLNFIKKAFEKSNIHF------ 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + S++L +LA A+ I NAH A D Sbjct: 111 -------------KPKKVLDTLELFKIAFPTEKSYQLSELANAHNIPLTNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ +K L Sbjct: 158 TAYLMIKAFKKFESLPIDTLK 178 >gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] Length = 256 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + I +N FD + F + + Sbjct: 65 HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186 >gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] Length = 820 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 64/204 (31%), Gaps = 31/204 (15%) Query: 4 HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D E + D R Q V V + I+ + +TG Sbjct: 7 KYAVIDLEAT--NAGSDARIIQIGIVIV-ENKKIIDRFQT---DINPHSKLSEHIKSLTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT Q+ ++ + +I + C+ +N++FD + ++ Sbjct: 61 ITDQQLASAPE-FSQVASQIFELIKD---CVFVAHNVKFDANLLAEALFFEGFELLT--- 113 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R D +++ + + + L LA + +AH A D Sbjct: 114 ----PRMDTVELAQVFF-------------PNLEKYNLGHLAKNMDLHLAHAHTAIDDAL 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206 AT L I++K L + Sbjct: 157 ATAKLFIKIQKKIESLPRETLEMM 180 >gi|90579019|ref|ZP_01234829.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] gi|90439852|gb|EAS65033.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] Length = 249 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 12/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + D V + ++ + KP D ++V I GIT Sbjct: 59 FVALDFETTGLNANKDDIISVGLVPFTINRIFCKQSQHWVVKPK--AKLDEDSVIIHGIT 116 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + ++ + + + + + Sbjct: 117 HSDVQTAP----DIRRILEAVLDSLAGKVVVVHYKAIERQFMDKALRVRLNEGIQ----- 167 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + I G + S +L + G+ H A D AT Sbjct: 168 -FPVVDTLALESHIQTQQYRGFLARLKGKKPGSVRLGKCRIRYGLPAYQPHHALTDALAT 226 Query: 185 LALVWLIREKK 195 L+ Sbjct: 227 AELLQAQIAYH 237 >gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 258 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 57/198 (28%), Gaps = 31/198 (15%) Query: 6 VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 V+ D ET G ++A + V V + D EA+ Sbjct: 10 VVLDTETTGMNMAGGPPQIGHNIIEIGAVEV-INRRLTGR--TYHVYIKPPREVDEEAIA 66 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + V AE + F I +N FD + F ++ + Sbjct: 67 VHGITNEFLQDKPV-FAEIAEEFLDFIKGAELII---HNAPFDVAFMDQEF--SYLPNPP 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + D L + R +Y L L GI++ H A Sbjct: 121 AKTAEMCTVTDSLQMARRMYPG--------------KRNNLDALCDRLGIDNSKRVLHGA 166 Query: 178 KADVYATLALVWLIREKK 195 D + ++ + Sbjct: 167 LLDAEILADVFLMMTGGQ 184 >gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866] Length = 256 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + I +N FD + F + + Sbjct: 65 HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] Length = 905 Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + D Q V + + D P +T I Sbjct: 5 SFAVVDLETTGNQLEHDEIIQIGITFVRDN-KISGTYHS---MIRTDLEIPPFIQALTSI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I++ CI +N+ FD + + F ++ Sbjct: 61 EETMLEQAPYFH-EIADDIYEQLKD---CIFVAHNVDFDLNFIKKAFEKSNIHF------ 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + S++L +LA A+ I NAH A D Sbjct: 111 -------------KPKKVLDTLELFKIAFPTEKSYQLSELANAHNIPLTNAHRADEDATT 157 Query: 184 TLALVWLIREKKPKLFEYLYD 204 T L+ +K L Sbjct: 158 TAYLMIKAFKKFESLPIDTLK 178 >gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] Length = 828 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN + I D E Q + + + I+ D V +T Sbjct: 6 TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGLVIDEFAS---DVNPHQELDDHIVHLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + +E +R I + CI +N++FD + ++ Sbjct: 61 GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y +KL L+ ++ AH A D Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YKLSYLSQVLNLDLAQAHTAIEDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L++ + +K L D Sbjct: 157 RATGQLLFHLMDKIASLPRQTIDM 180 >gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] Length = 839 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN + I D E Q + + + I+ D V +T Sbjct: 17 TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGLVIDEFAS---DVNPHQELDDHIVHLT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + +E +R I + CI +N++FD + ++ Sbjct: 72 GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y +KL L+ ++ AH A D Sbjct: 123 --LRTPRVDTVELAQVFYPTLEQ-------------YKLSYLSQVLNLDLAQAHTAIEDA 167 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L++ + +K L D Sbjct: 168 RATGQLLFHLMDKIASLPRQTIDM 191 >gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] Length = 239 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + ++ + + F + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCV---EMFNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + +F + +N FD + R + Sbjct: 61 SDFLADKPL----FAHVVDEFLEFIGDAPLVIHNASFDISFINAELDRLKRQAIGR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + S +L DL I++ H A D Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|260801297|ref|XP_002595532.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae] gi|229280779|gb|EEN51544.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae] Length = 208 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 70/214 (32%), Gaps = 33/214 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQF--AGVRVDRQW-------------EKIESTEVFFCKP 47 FV +D ET G D + + A VR D+ ++ +P Sbjct: 1 QTFVFFDLETTGLDQPR-QITEISLAAVRRDQLLTGTTVPPGGATIPRVMDKF-TVCVRP 58 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYY 105 D P+A IT +T Q + V + + + + + P C++ +N RFD Sbjct: 59 RRD--IHPKAAEITNLTNQTLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGNRFDFPI 116 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 + + D + ++ +YA P K+ + Sbjct: 117 LKAELGESETVDLF---PQDVLCVDTMVAIKDLYAGQFKSFSLP---------KIHETLF 164 Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 AH A+ DV + +V + K+ + Sbjct: 165 GEAPPPEVAHTAEGDVITMVKIVKKLGAKEILQW 198 >gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] Length = 829 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 29/192 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V+ D E + + Q V + E I+ D +TG Sbjct: 6 DRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q+ ++ + +I + I +N++FD + + Sbjct: 61 LTDQRLAVAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + R D +++ + +Y + L L GIE +AH A +D Sbjct: 110 ELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHTALSDAQ 156 Query: 183 ATLALVWLIREK 194 AT L+ +R+K Sbjct: 157 ATAELLLYMRQK 168 >gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas albilineans GPE PC73] gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas albilineans] Length = 244 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 26/202 (12%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V + + F D +P A +TG+T Sbjct: 4 IILDTETTGLEWKKGNRVVEIGAVEL-LERRPSGRH--FHRYLRPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E +F + + +N FD + R Sbjct: 61 LEFLADKPEFH-EVVDEFLEFI---DGAELVIHNASFDLGFLDYELSRL----------- 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 G S +LD + ++P + L L G++ H H A D Sbjct: 106 GESYGCILDRASVVDTLLLARERFPGQ-----RNSLDALCKRLGVDNAHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 + + + ++ L + Sbjct: 161 ILCEVYIALTSGQEEIGFALVE 182 >gi|152998334|ref|YP_001343169.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1] gi|150839258|gb|ABR73234.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 236 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 17/193 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D + D + + + I + + + E+V I IT Sbjct: 51 LLALDLETTGLDPSQDEIISLGLIPL--NHKIIRCQGAKYWMAKPECSLNAESVTIHEIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A + + +I + + + + + + Sbjct: 109 HSELEEAPRLHA----ILDEILLALTHQVIVVHCVAIERQFLLKASMKIYGYPLY----- 159 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D+ R W R S +L + AH A D ++ Sbjct: 160 -FPVLDTMDIERQ-----VTFKPWWKRFGRRPSLRLDACRQRYKLPRYKAHHALTDALSS 213 Query: 185 LALVWLIREKKPK 197 L+ Sbjct: 214 AELLQAQIAYHMD 226 >gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] Length = 819 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 29/207 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E + + Q V + + +++ E DP +T Sbjct: 5 KRKYAVVDLEATSAS-SNAKIIQVGIVLI-ENGQIVKTYET---DVNPHEKLDPHIRQLT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ + ++ +R I++ I +N++FD + ++ Sbjct: 60 GLTDKRLRKAP-DFSQVAREIYELIED---AIFVAHNVKFDANLLAEALFWEGFELVT-- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L L I +AH A AD Sbjct: 114 -----PRVDTVELAQVFFPTFE-------------KYNLGILCEQLDIPLKHAHTALADA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNK 208 AT L I+EK KL + L +Y K Sbjct: 156 SATATLFLKIQEKIQKLPKELVEYLLK 182 >gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] Length = 828 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 29/193 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN + I D E ++ Q V + + + I+ D + +T Sbjct: 6 TNKYAIVDLEAT-FASSMASIIQVGIV-IMQNGQVIDEFAS---DVNPHQKLDDHIIHLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + +E +R+I CI +N++FD + Sbjct: 61 GITDQQLAQAP-DFSEIARKIFDLIED---CIFVAHNVKFDANLLSEALFMEG------- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ R D +++ + Y +KL L+ ++ AH A D Sbjct: 110 YELRTPRVDTVELAQVFYPTLEH-------------YKLSHLSKVLNLDLAQAHTAIEDA 156 Query: 182 YATLALVWLIREK 194 AT L++ + +K Sbjct: 157 RATGQLLFHLMDK 169 >gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae ATCC 23330] Length = 252 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 33/198 (16%) Query: 6 VIYDYETFGRDVAL----DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +I D ET G + + DR +FAG+ V+RQ+ + +P+A+ + Sbjct: 9 IILDTETTGFEHSAAENPDRMIEFAGLEMVNRQF----TKNNLHLYIHPQRDINPDAIAV 64 Query: 61 TGITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT +K + AE +++I F I +N +FD + F R Sbjct: 65 HGITLEKLESENAPVFAEVAQQIFDFIKGAELII---HNAKFDVGFLDAEFARVGLP--- 118 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 + D L++ R Y + L L ++ H A Sbjct: 119 -KVKTICTVVDTLEMARDRYPGQKN--------------SLDALCNRLDVDRSRRVLHGA 163 Query: 178 KADVYATLALVWLIREKK 195 D + + + Sbjct: 164 LIDCELLGEVYLAMTRGQ 181 >gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] Length = 816 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 29/193 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E +E D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVEQYAT---DVNPHERLDSHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T ++ + ++ + +I + I +N++FD + + Sbjct: 61 LTDKRLAKAPE-FSQVAEKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + R D +++ + Y + L L GI AH A +D Sbjct: 110 ELRTPRIDTVELAQIFY-------------PQLEKYNLGILCQELGIPLEQAHSALSDAQ 156 Query: 183 ATLALVWLIREKK 195 AT L +R+K Sbjct: 157 ATAELFLCMRQKM 169 >gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] Length = 256 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + I +N FD + F + + Sbjct: 65 HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 240 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 6/111 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V R + + E +AV + GI+ ++ Sbjct: 11 FDLETTGTDPREARIVT-AAVIELRDGQSLGRREWLA---DPGMEIPADAVAVHGISNER 66 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A +G + + I + + N FD R Sbjct: 67 AAAEGRPADQVADAIADVLTTYWKTGVPVVAYNAAFDLSLLSAELRRYGLP 117 >gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] Length = 238 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 29/198 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D R + A + V+R++ + + D A + GI Sbjct: 4 IVLDTETTGLDPRSGHRIIEVACIEMVNRRF----TGHHLHKYINPEREIDEGAQAVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A+ + +F + I +N FD + R Sbjct: 60 TLEFLADKPK-FADIADEFLEFINGAELII---HNAPFDIGFLNAELDRLGRVPV----- 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 G ++D +R L L I++ + H A D Sbjct: 111 -GTICNGVIDTLRMAKELH-----------PGKRNSLDALCERYEIDNSSRTLHGALLDT 158 Query: 182 YATLALVWLIREKKPKLF 199 + + + L Sbjct: 159 ELLADVFLAMTRGQNSLM 176 >gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317 str. F0108] gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317 str. F0108] Length = 900 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 31/217 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFC--KPAD---DYLPDP 55 T V++D ET G +V D Q A V++ + VF +P +P+P Sbjct: 514 TEEIVVFDTETTGLNVFEDDIVQIAAVKMRAGCVVEGAAFNVFIKTERPIPAMLGDIPNP 573 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I + + ++ + F ++ +N FD R R Sbjct: 574 -------IVAELQHNTCLP---AAQALQSFMQYVGNSMLLAHNADFDYNILRFNLQR--- 620 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 +D+ + G +KL+ L +E N+H Sbjct: 621 ------------YCPSIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLEVLHLEGTNSH 668 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 A DV AT++LV R+K ++ + + +++ Sbjct: 669 LADEDVQATVSLVGYCRQKAAEMIPAQQQFLARQRVQ 705 >gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] Length = 237 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 29/184 (15%) Query: 8 YDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G + DR + GV + + + + EA + G++ + Sbjct: 6 FDTETTGLNPRGGDRLVEIGGV---ELINHVATGKSYHVYINPQRDMPEEAFRVHGLSVE 62 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E + +F + +N FD + R + S Sbjct: 63 FLSDKPLFEH-VADEFLEFV---GDATLVIHNAAFDMGFINMELERAGRRTIPNSQ---- 114 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184 D LD+ R + P+ L L GI++ H A D Sbjct: 115 -VLDTLDLARRKHPSGPN--------------SLDALCSRYGIDNSKRIKHGALLDAEIL 159 Query: 185 LALV 188 + Sbjct: 160 AEVY 163 >gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] Length = 893 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 35/221 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---------PDPE 56 V++D ET G DV D + A +R+ + + + + L P Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRL-HNGKPVGEPLDLYIETNRPILEKLGENENPLYP- 570 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I +K + +++ F++ + +N+ +D + R+ D Sbjct: 571 ------IYHEKLAKGELLQPN--EAFQLFWNYVGDATLLGHNVMYDRNILHHNLLRHAQD 622 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N +D L +MR S+KL+ L + N+H Sbjct: 623 CMENH---ANPVFDSLKIMRL-------------LQPNLPSYKLETLLERFQLVGENSHK 666 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 A DV AT++LV L EK K ++ ++ + Sbjct: 667 AIDDVAATISLVALCAEKAAKKQAKQAEFLQHKRVIPFVRK 707 >gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513] Length = 224 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 13 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 69 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 166 AYLTAGLYLHQQGVAKP 182 >gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 327 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A R+D + E + + P P V+I G+T Sbjct: 23 YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTV---VNPERDPGP--VWIHGLT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + ++ +N FD + R S Sbjct: 77 SEALEGAPL-FRDVAEEFATRLE---GRVLVAHNAVFDWQMIAREYAR------ARSEAP 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + + + + KL+ LA G+ AH A D Sbjct: 127 VKQRLCTIALSK-------------ELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVL 173 Query: 185 LALVW 189 Sbjct: 174 AEAFR 178 >gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355] Length = 243 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L ++ + + + +N FD + F + + Sbjct: 66 HGIADEFLLDKP-TFSDIADEFLDYIRGAE---LVIHNASFDIGFMDYEFGKLQRGIEKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLAMARRMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D ++ + + L + R + Q + Sbjct: 166 LDAEILAEVLLTMTGGQTSLSFSSEEERARQQQSE 200 >gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1] gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23] gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1] gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23] gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp. fastidiosa GB514] Length = 239 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 32/203 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G + + +R + V E ++ F D + A +T Sbjct: 8 IVLDTETTGLEWSKGNRIVEIGAV------ELLDRRLSGDKFHRYLKPDVSFESGAQEVT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + EFS +F + N + +N FD + R S Sbjct: 62 GLTMEFLADKP----EFSMIADKFLAYINGAELIIHNAAFDLGFLDYELSRLG--SQYGK 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 + S D L + R Y + L L G++ H H A Sbjct: 116 ITDRASVLDTLVMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALL 161 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D + + + ++ L Sbjct: 162 DAQILADVYIALTSGQEEIGFAL 184 >gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] Length = 255 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F + EA+ + Sbjct: 10 VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + AE F + +N FD + + F + Sbjct: 67 HGITNEFLQDKP-SFAEIVDEFVAFIKGAE---LVIHNAPFDVGFMDHEFSFLANPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 123 --AEMCTVTDSLALARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKK 195 D + ++ + Sbjct: 167 LDAEILADVFLMMTGGQ 183 >gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] Length = 230 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 29/221 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D A DR + + ++ + F A + G++ Sbjct: 4 IIFDTETTGFDPASGDRLVEIGCI---ELLNRVPTGRTFHAYYNPQRSMPAAAEAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + FS + + + + +N RFD + + Sbjct: 61 DSFLRDKPL----FSHGVEELLAFLEDSHLVAHNARFDFGFLNHELRLCGLPEVSM---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D + + R ++ + L L GI+ H H A D Sbjct: 113 -ARMIDTVAIARQLHPGA--------------KHSLDALCTRYGIDRSHRIKHGALLDAE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 L + + + + +L + P+ Sbjct: 158 LLAQLYIELTGGRQIGLGLAQEEEKRVANMELAAEVAVRPV 198 >gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] Length = 658 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 38/130 (29%), Gaps = 14/130 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G R + A +R R + + +TGI Sbjct: 88 FVVIDIETTGLRPLRQRIIEVAAIRY-RGGRRQGVFSTL---VNPERPVPAYIRKLTGID 143 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V + + F + +IGYN FD + R Sbjct: 144 ETALAGAPV-FRRVADELTAFL--GDDLLIGYNV-EFDIAFLNAELKRLGRPPLIN---- 195 Query: 125 GNSRWDLLDV 134 R DLL + Sbjct: 196 --PRLDLLPL 203 >gi|148980340|ref|ZP_01816006.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3] gi|145961282|gb|EDK26593.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3] Length = 238 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 19/201 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G D D V V + +I+ +D + E I IT Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLNNDSQINAETAVINHIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ +G + FF II + ++ + R + Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACVVEEKFISQYLLRCYG--------- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L ++ ++ + L G+ N+H+A AD +T Sbjct: 156 ----LRQLPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRERYGLPEYNSHNALADAVST 211 Query: 185 LALVWLIREKKPKLFEYLYDY 205 L+ +++ E + Sbjct: 212 AELLLAQQKRVVPNDEVTLSF 232 >gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 230 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + + + EA + G+ Sbjct: 4 IVLDTETTGFEPETGDRIVEIGAVEL-YNHVPTGK--TYHQYINPERSMPNEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F++ + F + +N FD + + Sbjct: 61 DDFLRDKPL----FAQIVDDFLEFIGDAKLVIHNAAFDVKFLNAELRWSKRPQLPR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L++ R + SP L L GI++ + H A D Sbjct: 113 -DCAIDTLEIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKL 198 + + K Sbjct: 158 ILADVYLELIGGKQPD 173 >gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2] gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter autotrophicus Py2] Length = 298 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 74/270 (27%), Gaps = 45/270 (16%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D ET G D D + A + +S + PE IT Sbjct: 46 VVDVETTGLDPQRDEIIELAMTPFSYGLDGTIFSVGDSFQGLR---QPSEPILPEITAIT 102 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + A + F+ P + I +N ++ R Sbjct: 103 GITNEMVAGQIIDPAVVAT-----FAAPASLFIAHNAAFDRRFFERFSD----------- 146 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + ++ Q +G KL LA A G + H A D Sbjct: 147 -------------VFSTKPWACSLSQIDWAAEGFQGAKLAYLAQAAGF-FYDRHRAMHDC 192 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 AT+ L+ + + + ++ + L V G + Sbjct: 193 LATIELLAMQLPRSGVTGLSRLLDGARTVSWRIWAENSPFDLKDVLKARGYRWNGDP--- 249 Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271 HPR I + + L + Sbjct: 250 --GPHPR--AWYIDVPEAQREAEVRFLSTE 275 >gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] Length = 234 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI+D ET G D DR + V + + + + P D EA + G++ Sbjct: 4 VIFDTETTGLDPKTGDRMVEIGCVEM-VGRVETGRSYHAYYNPERDMPSAAEA--VHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + + +F + +N FD + R +S Sbjct: 61 ISFLETKPR-FSETADELLEFL---GDAPLVAHNAGFDFGFLNAELERIGRESIAM---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D + + R + + L L GI+ H H A D Sbjct: 113 -DRMVDTVAIARKKHPGA--------------KLSLDALCTRYGIDRSHRVKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAQVY 163 >gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] Length = 240 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 26/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G +V+ R + V + + F + D A+ + GIT Sbjct: 4 IVLDTETTGLEVSQGHRIIEIGCVEL-QNRLLTGRH--FHRYINPERDIDAGAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V + ++ F I +N FD + + R D Sbjct: 61 ATFLADKPV-FSAVAKDFVDFVDGAELII---HNAPFDIGFLDSELSR--IDPAALPLAQ 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R+ + + L L +++ + H A D Sbjct: 115 RCEITDTLVMARSRHPGQRN--------------SLDALCQRYAVDNSSRDLHGALLDAE 160 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 161 ILADVYLTMTGGQT 174 >gi|90412153|ref|ZP_01220159.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90326877|gb|EAS43262.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 238 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 55/194 (28%), Gaps = 14/194 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G +V D V I + + +P + ++V I IT Sbjct: 48 FVAMDFETTGLNVKKDGIITIGLVPFTLNRVYINRAQHWIVRPR--QKLNEQSVVIHNIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L + S I + ++ + R + + + Sbjct: 106 HNDILDAP----DLSEVIEPVLAALAGRVVVVHYRRIEREFLDRALKDRIKEGIE----- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADVYA 183 D LD + A +G W S +L G+ H A D A Sbjct: 157 -FPVIDTLD-LEAHIQQRLNGGFWNKLKGKKPQSVRLAQARKRYGLPAYTPHHALTDAIA 214 Query: 184 TLALVWLIREKKPK 197 T L+ Sbjct: 215 TAELLQAQIAYHYD 228 >gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] Length = 239 Score = 76.8 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + ++ + + F + EA + G++ Sbjct: 4 IVLDIETTGLDPLRGDRVVEIGCVEI---FNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ + F + +N FD + R + Sbjct: 61 SEFLAEKPL----FTHIVDDFLEFIGDAPLVIHNASFDISFINAELDRLKMRTIGR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + S +L DL I++ H A D Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185] gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185] Length = 221 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G D R + A ++ +E + P V I G++ Sbjct: 15 FAVVDVETSGLDPLRHRVIEVAVTQLTPSGG-LEREWSSLVRARGGTGP----VHIHGLS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ + + + I+ +N FD + R + Sbjct: 70 DYDVRDAPG-FADLVDELSELL---DGRILVAHNAAFDWAFLAAEARRAGRELPVSE--- 122 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + R + + +L LA I NAH A DV Sbjct: 123 ---RLCTWHLAR-------------GLELPTDNLRLGTLAEYWSIPVENAHRAGDDVRVL 166 Query: 185 LALVWLIREKKPK 197 + ++ ++ + Sbjct: 167 VEVLRRCLDEAGR 179 >gi|319764450|ref|YP_004128387.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus denitrificans BC] gi|330826666|ref|YP_004389969.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] gi|317119011|gb|ADV01500.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans BC] gi|329312038|gb|AEB86453.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] Length = 221 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 50/188 (26%), Gaps = 14/188 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G + D VR+ + +P +V I + Sbjct: 43 VALDCETTGLNPRTDEIVSIGAVRIVGERILTSERLELLVRPEKGV--SAGSVRIHRLRE 100 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + G+ E RR+ F + ++GY R I+ + + Sbjct: 101 RDLAG-GIPRDEAMRRLMHFI--GSRPLVGYYLEFDVAMLGRAIWPLLGMGLPQRKIEVS 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + + + + L + AHDA D Sbjct: 158 ALYYD---------YKFRQLPPYQQQANADIDLRFSTLMRDLQLPEREAHDALNDAVMAA 208 Query: 186 ALVWLIRE 193 +R Sbjct: 209 MAFIKLRR 216 >gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 823 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D E Q V V+ + E ++S + +T Sbjct: 6 SQKYAVIDLEATSPGPTAS-IIQVGIVIVEGK-EIVDSYQT---DINPHEPLSDHIKALT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + ++ +R I + C+ +N+ FD + YD Sbjct: 61 GITDQQLAQAP-DFSQVARTIFELIED---CVFVAHNVTFDANLLAEALFLEGYDLLT-- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L L+ + +AH A AD Sbjct: 115 -----PRVDTVELAQIFY-------------PSLEKYSLSHLSEVLDLNLSDAHTAIADA 156 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L + K L + Sbjct: 157 QATANLFIKLLHKIESLPRECLET 180 >gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] Length = 186 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 30/186 (16%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D A DR + A V V + KI + F + GI Sbjct: 8 FCVVDTETTGTDPFAGDRIVEIAAVPVFKG--KIYRNKAFHSLVNPRIRIPALVQKVHGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++ F ++ ++N FD + + + Sbjct: 66 SNMDIEEAPD-----MDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPY 120 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D LD+ I+ L+ L GI+ H A D Sbjct: 121 ------IDTLDLSEEIFG---------------RPHSLKWLCERLGIKTTIRHRALPDAL 159 Query: 183 ATLALV 188 T + Sbjct: 160 VTARVF 165 >gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901] gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901] Length = 239 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 26/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + R + V + + + + F D D A+ + GIT Sbjct: 4 IVLDTETTGLEPEQGHRIIEIGCV---ELFNRKLTGKHFHQYIRPDREIDEGAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V A+ + F + +N FD + + + Sbjct: 61 NEFLADKPV-FAQIADDFLTFIGDAE---LVIHNAPFDVGFLDHELR--LLNRGLAPIRE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L R + + L L +++ H A D Sbjct: 115 RCGVLDTLVYARRKHPGQKN--------------NLDALCKRYMVDNSQRDLHGALLDAE 160 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 161 ILADVYLAMTGGQT 174 >gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] Length = 204 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 58/193 (30%), Gaps = 20/193 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V++D ET G + D V++ + + + F+ + + E + I G Sbjct: 32 DEYVVFDTETTGLNPKTDDILSIGAVKIKQNRILLN--DRFYTVVKPEREINEETIKIHG 89 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + G+ + + +F + ++GY ++ Sbjct: 90 LRKKDLEN-GIPIEKAIKDFLRFI--GSRPLVGYYIDFDVAMINKYTKKIIGIPLPNKKI 146 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D + + G + + I HDA D Sbjct: 147 EVSGMYYD---------------YKIGTIPQGFVDLRFDSILKGLKIPSFGKHDALNDAI 191 Query: 183 ATLALVWLIREKK 195 T + ++ K Sbjct: 192 MTGLIFLKLKSKN 204 >gi|317969731|ref|ZP_07971121.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp. CB0205] Length = 302 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 60/229 (26%), Gaps = 29/229 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G A R + V + S F A + GI Sbjct: 73 LLILDTETTGLSPAEHRCIEVGAVLFSVPDRSVLSQVSFLMPCT-----SNAAEAVNGIA 127 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + + ++ +N FD + Sbjct: 128 PA-LTQRPQPWQAGLACFEAMVEAAD--VLLAHNAAFDQQWFG----------------- 167 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + S + I+WP ++ ++DLALA G+ AH A D Sbjct: 168 ----LGSLPALSKPWLCSMEDIRWPQERQLRSTPSVRDLALAYGVPVWAAHRALTDCIYL 223 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + + + L + + R + + Sbjct: 224 AQVFERCEDLEDLLLQAMEPRRLYRARLSYEERHKAREAGFRWNQPVSG 272 >gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus NJ8700] gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus NJ8700] Length = 254 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 31/204 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DPEA+ + Sbjct: 11 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPEAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + +FS+ ++F + +N FD + F + Sbjct: 68 HGITDEMLADKP----DFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTN 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R +Y L L I++ H A Sbjct: 124 ---DICTVTDTLVMARQMYPG--------------KKNNLDALCSRLDIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + + LF+ Sbjct: 167 LDAEILADVYLAMTGGQTSLFDES 190 >gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 261 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 66/205 (32%), Gaps = 31/205 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G+ + Q ++V + + + + +TGI+ Sbjct: 8 YTVFDLETTGK-----KIIQIGALKVRDD-QTVAKFSTY---VNPLEKINDYVSHLTGIS 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +++ E F + ++G+N + FD + + Sbjct: 59 NYQTDAAPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNG-----------YPV 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N + D L + + D + +L + GI N+H A +D Sbjct: 105 ANPKLDTL-------LLANSYKKRGLFADPIPNVRLSTMKEYYGINI-NSHIAISDCITN 156 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 + +R+ + D+ K Sbjct: 157 NIVYQKLRDGDLAKATEIIDFTPKQ 181 >gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] Length = 230 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 53/197 (26%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V +D + EA + G+ Sbjct: 4 IVLDTETTGFDPEDGDRIVEIGAVELD-NHMPTGR--TYHQYINPQRAMPREAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V F+R F + +N FD + S Sbjct: 61 DEFLADKPV----FARIGRAFLDFVGDARLVIHNASFDMKFLNAELGWANLPRLPDSQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D + + R+ + SP L L GI++ H A D Sbjct: 116 ----LDTVAMARSKFPGSP--------------VSLDALCRRFGIDNSARTYHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] Length = 241 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITSTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 328 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR A ++D + + P P V+I G+T Sbjct: 26 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTL---VNPQRDPGP--VWIHGLT 79 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + + + ++ +N FD + R+ Sbjct: 80 EEVLEGAPR-FPEIAGELAERLADR---VLVAHNAAFDWSMLAREYARS----------- 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + KL+ LA G+ AH A D Sbjct: 125 --------KSAAPVRQRLCTIALSKELGLPLPNHKLETLAAHYGVVQRRAHHALDDARVL 176 Query: 185 LALVW 189 Sbjct: 177 AETFR 181 >gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] Length = 180 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 58/194 (29%), Gaps = 32/194 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G DR + A V + IE F C + I GIT Sbjct: 14 VAVDVETTGLSPLRGDRVIEVAAVAIVNG--VIEEH--FCCLINVNAPIPTVVQKIHGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + EA +F + + I+ +N FD + RN S Sbjct: 70 PELLAGEKPPEA----VWPEFLNFIGSNILIAHNAPFDISFIRNELQLLGLSLLNGSQ-- 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHV-NAHDAKADV 181 + ++P S KL ++A G+ H A D Sbjct: 124 --------------CTLAFSRKKFP----QLKSHKLDNVARHVLGGMPKGIKLHRASGDA 165 Query: 182 YATLALVWLIREKK 195 T + I + Sbjct: 166 LLTAMIWQAIENTQ 179 >gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] Length = 256 Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor salsuginis DSM 16511] gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor salsuginis DSM 16511] Length = 294 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 64/198 (32%), Gaps = 20/198 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +I D ET G D A DR Q A + +D E +E P + +A+ I Sbjct: 1 MKT-IILDTETTGTD-AEDRICQLAYLVLDESGEVVEHYNELCTPPLE---IKYDAMAIH 55 Query: 62 GITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 ITP+ E E RR+ + + P ++ N + Sbjct: 56 HITPEMLEGKPACTETEGFRRLRE-LNSPENLLVIQNAPFDLAMLEKEG----------- 103 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++N D ++R SP Q R + L G E AHDA D Sbjct: 104 -FENRMRLIDTFRLVRKFMPDSPQHGQQYLRYALGLYREEPALIEKLGEEV-RAHDALGD 161 Query: 181 VYATLALVWLIREKKPKL 198 V L + + Sbjct: 162 VIVLKHLYEYLLREHSAE 179 >gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] Length = 447 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 35/210 (16%) Query: 4 HFVIYDYETFGR---------------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 +++ +D+ET G + R + R ++ I++ + Sbjct: 6 NYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIR--P 63 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 D + E++ I GI+ +KAL +G E R +F P T + +N +FD ++ Sbjct: 64 DGFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIG-PRTKTLVAHNAQFDTSVLQS 122 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 R+ + +D + ++ + A G Sbjct: 123 EMLRHGIP------------LEQIDDLVIRCTLEMYRDRFMGPIKLTKLY-----ADIFG 165 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198 E NAH++ AD A + + + + Sbjct: 166 EEFDNAHNSLADSIACGRVYPYLLGQTERT 195 >gi|84386996|ref|ZP_00990019.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01] gi|84378071|gb|EAP94931.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01] Length = 238 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 19/190 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G D D V V + +I+ +D + E I IT Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLDNDSQINAETAVINHIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ +G + FF II + ++ + R + Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACMVEERFISQYLLRCYG--------- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + ++ ++ + L G+ N H+A AD +T Sbjct: 156 ----LRAIPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRERYGLPEYNNHNALADAVST 211 Query: 185 LALVWLIREK 194 L +++ Sbjct: 212 AELFLAQQKR 221 >gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810] Length = 255 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 31/230 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCERLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 D + ++ + LF+ + + + + V S Sbjct: 164 LDAEILADVYLMMTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSH 213 >gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103] gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103] Length = 243 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 30/215 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + GV V F D L DPEA + Sbjct: 9 IVLDTETTGMNMIGVHYEGHRIIEIGGVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L ++ + + + +N FD + F + + Sbjct: 66 HGIADEFLLDKP-TFSDIADEFLDYIRGAE---LVIHNASFDIGFMDYEFGKLQRGIEKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLAMARRMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 D + + + L + R + Q + Sbjct: 166 LDAEILAEVFLTMTGGQTSLSFSSEEERARQQQSE 200 >gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 821 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D E Q V ++ + E ++S + +T Sbjct: 6 SQKYAVIDLEATSPGPTAS-IIQVGIVIIEGK-EIVDSYQT---DVNPHEPLSDHIKALT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + ++ +R I + C+ +N+ FD + YD Sbjct: 61 GITDQQLAQAP-DFSQVARTIFELIED---CVFVAHNVTFDANLLAEALFLEGYDLLT-- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L L+ + +AH A AD Sbjct: 115 -----PRVDTVELAQIFY-------------PSLEKYSLSHLSEVLDLNLSDAHTAIADA 156 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L + K L + Sbjct: 157 QATANLFIKLLHKIESLPRECLET 180 >gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661] gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661] Length = 215 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V ++D + + T F +P + + PEA+ G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD ++ R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAAADRAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D + + +F + AH Sbjct: 140 ------RNPFHPFVTFDTAALSGLVLGQTVLAKACAAAGMAF-----------DSSQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTVQTADLFCELVNR 200 >gi|117924351|ref|YP_864968.1| exonuclease, RNase T and DNA polymerase III [Magnetococcus sp. MC-1] gi|117608107|gb|ABK43562.1| Exonuclease, RNase T and DNA polymerase III [Magnetococcus sp. MC-1] Length = 230 Score = 76.4 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 18/192 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D ET G D V V + S + + + AV + GI Sbjct: 43 KFLALDLETTGLDPNKSEILSVGFVPV-YNGRVVLSGCAHYLVQPEGAISHASAV-VHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T A G + R+ + ++ ++ + + R R + Sbjct: 101 TDDHAEAYGEPLSVVLPRVLKALK---GHVLLAHHCPIELNFIRKACQRLY--------- 148 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + + S + +L + AHDA D A Sbjct: 149 GEMPLIPAVDTLVIER----QIMDRRSGTYEPGALRLFTARTRYNLPRYAAHDALMDAIA 204 Query: 184 TLALVWLIREKK 195 L + Sbjct: 205 CGELFLAQAVYQ 216 >gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] Length = 243 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 30/198 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + ++ + + + +N FD + F + + Sbjct: 66 HGIADEFLADKPA-FSDIADEFLDYIRGAE---LVIHNAPFDIGFMDYEFSKLNRGIEKT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + R ++ L L I++ H A Sbjct: 122 E--TFCKITDSLALARRMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKP 196 D + + + Sbjct: 166 LDAEILAEVFLTMTGGQT 183 >gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] Length = 223 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 32/192 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A VR+D ++ E+ A I GIT +K Sbjct: 11 FDLETTSVNPKEARIVTSALVRID--GRDVDKREMLA---DPGVEIPEAAAKIHGITTEK 65 Query: 68 ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A +G E + I Q + +I YN + Sbjct: 66 ARAEGQPHDEVLAQTVRSIRQAWDD-GLTLIVYNAAYDLSVLRA----------LTGDFT 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + R + L D++ G+ NAH+A +D A Sbjct: 115 VDGPVFDPFVIDRVKDKWR------------KGKRTLGDVSAHYGVTLENAHEATSDALA 162 Query: 184 TLALVWLIREKK 195 + W+ + Sbjct: 163 AARIAWMQVRQH 174 >gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] Length = 240 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 57/214 (26%), Gaps = 34/214 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V W + + E + + EA + GI Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAV---ELWNHVATGETYHVYINPERGMPDEAFGVHGIG 60 Query: 65 PQKALRDGVVE---------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 P E F++ F + +N FD + Sbjct: 61 PDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVGDAQLVIHNASFDMKFLNAELGWMGV 120 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + D L + R + SP L L GI++ N Sbjct: 121 PLIPMAQA-----IDTLAIARKRFPGSPA--------------SLDALCRRFGIDNSNRV 161 Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 H A D + + + F N Sbjct: 162 LHGALLDSEILAEVYLELIGGRQPDFGLSTSASN 195 >gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] Length = 230 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 71/250 (28%), Gaps = 30/250 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + + EA + G++ Sbjct: 4 IVLDTETTGLDALRGDRLVEIGCV---EMFNHMPTGQTYHVYINPERDMPQEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A + +F I +N FD + R + Sbjct: 61 TEFLADKPL-FAAVADEFLEFIGDAPLII---HNASFDIGFINMELDRLKRAAIPCERL- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + S +L DL I++ H A D Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 + + + R + + ++ PL + +A Sbjct: 158 LLAEVYIDLIGARQSSLILAETERTQIHVVEVTRRVREVPLASRITVEEREAHRA-FVAT 216 Query: 243 VAWHPRYKDS 252 + HP + + Sbjct: 217 LGDHPLWAEF 226 >gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01] Length = 233 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 64/218 (29%), Gaps = 23/218 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G ++ D+ V +D I+ E F C + I G Sbjct: 39 QRLVVLDLETTGLNMRRDQVLAIGAVVIDHGA--IDFAEQFECTLHQPDHQASASTLIHG 96 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P + R GV AE + F + + + FD ++ + S+ Sbjct: 97 IAPSEVAR-GVDPAE---GLLDFMEFVGSSPLLAFHAGFDQRMLARALRQSLGYRLQHSF 152 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + LL I L D G++ H+A AD Sbjct: 153 FDVAEIAPLLCPQARIRQG-----------------GLDDWVAEFGLQVHQRHNASADAL 195 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 T L ++ K + + + M Sbjct: 196 VTAELALMLFSKARRQGIDSLCELERQLASRRRRQHAM 233 >gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori Gambia94/24] Length = 287 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V R E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-RGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 260 >gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] Length = 233 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEAAKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPF----- 117 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 118 -DGKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|28898677|ref|NP_798282.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|28806895|dbj|BAC60166.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] Length = 243 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + V +I + K D ++V I GIT Sbjct: 53 FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 110 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + S + + + II + R + + + Sbjct: 111 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 161 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + I S GI + S +L G+ + H A D A Sbjct: 162 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAA 220 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 221 AELLQAQMAHHYND 234 >gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] Length = 189 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 55/186 (29%), Gaps = 30/186 (16%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D A DR + A V V + KI + F + GI Sbjct: 11 FCVVDTETTGTDPFAGDRIVEIAAVPVFKG--KIYRNKAFHSLVNPRIRIPALIQKVHGI 68 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + ++ F ++ ++N FD + + + Sbjct: 69 SNMDIVEAPD-----MDTVYDLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPY 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D LD+ I+ L+ L+ GI+ H A D Sbjct: 124 ------IDTLDLSEEIFG---------------RPHSLKWLSERLGIKTTIRHRALPDAL 162 Query: 183 ATLALV 188 T + Sbjct: 163 VTARVF 168 >gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 232 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D++ D V V I+ ++ F D + D +AV + G+ Sbjct: 45 YVVFDTETTGFDLSRDNVISIGAVAVMNGS--IDISDSFEVLIRCDRVGDGDAVSVHGLL 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + G E E + I+ + FD I R+++ Sbjct: 103 RRDLVG-GCNEREALDGFLNYI---GDSILVAQHAGFDIAMMNAIMRRHYH--------- 149 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182 +LL+ + + + + P + S ++L L I + H + D + Sbjct: 150 ----MELLNDVLDTASLAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDRHTSAGDAF 205 Query: 183 ATLALVWLIREKK 195 T L + Sbjct: 206 LTAQLFQRLLYSA 218 >gi|153839656|ref|ZP_01992323.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|260900787|ref|ZP_05909182.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|149746830|gb|EDM57818.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|308106848|gb|EFO44388.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 239 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + V +I + K D ++V I GIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + S + + + II + R + + + Sbjct: 107 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + I S GI + S +L G+ + H A D A Sbjct: 158 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAA 216 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 217 AELLQAQMAHHYND 230 >gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] Length = 253 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V V F + EA+ + Sbjct: 10 VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + AE F + +N FD + + F + Sbjct: 67 HGITNEFLQDKP-TFAEIVDEFVAFIKGAE---LVIHNAPFDVGFMDHEFSFLANPPPKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 123 --AEMCTVTDSLALARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKK 195 D + ++ + Sbjct: 167 LDAEILADVFLMMTGGQ 183 >gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] Length = 463 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 29/184 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D E+ G + DR + A +R +R K V +TGIT + Sbjct: 23 VVDLESTGGNFYRDRITEVAVLRFERGAAKRYEWLV-----NPQQPIPKFVADLTGITDE 77 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 V ++ + + + ++ +N RFD + R+ F R D Sbjct: 78 AVSGAPV-FSDIAADLLPLL---HGAVVVAHNSRFDYTFLRHEFRRAGMDFAA------- 126 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L ++ P + L + GI + H A ADV A Sbjct: 127 ---PALCTVQLSRRLYPQFYR----------HNLDSIIERFGIAVESRHRAMADVAALSD 173 Query: 187 LVWL 190 + Sbjct: 174 FLER 177 >gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 307 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 33/183 (18%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVF 59 ++ D ET G D A ++ + A +RVD + +V+ PE V Sbjct: 37 KTILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVA 96 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ITGI + EA + + ++ +N FD + Sbjct: 97 ITGIQDADVQGQALDEARVAELMQ------GVDVVIAHNAGFDRPFVE------------ 138 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 SR + +F+ + G +S KL+ LA G+ +AH A+ Sbjct: 139 -------SRLPAFAALPWACSFADLDWK----SLGRSSAKLESLAQELGL-FYDAHRAEM 186 Query: 180 DVY 182 D + Sbjct: 187 DCH 189 >gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] Length = 256 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPGKRS--------------NLDALCERLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186 >gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 261 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 31/205 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G+ + Q ++V + + + + +TGI+ Sbjct: 8 YTVFDLETTGK-----KIIQIGALKVRDD-QTVAKFSTY---VNPLEKINDYVSHLTGIS 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +++ E F + ++G+N + FD + + Sbjct: 59 NYQTDAAPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNG-----------YPV 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N + D L + + D + +L L GI N H A +D Sbjct: 105 ANPKLDTL-------LLANSYKKRGLFADPIPNVRLSTLKEYYGINI-NFHIAISDCITN 156 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 + + + + D+ K Sbjct: 157 NIVYQKLLDGDLAKATEIIDFTPKQ 181 >gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12] gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 239 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 32/203 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G + + +R + V E ++ F D + A +T Sbjct: 8 IVLDTETTGLEWSKGNRIVEIGAV------ELLDRRLSGDKFHRYLKPDVSFESGAQEVT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + EFS +F + N + +N FD + R S Sbjct: 62 GLTMEFLADKP----EFSMIADEFLAYINGAELIIHNAAFDLGFLDYELSRLG--SQYGK 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179 + S D L + R Y + L L G++ H H A Sbjct: 116 ITDRASVLDTLVMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALL 161 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D + + + ++ L Sbjct: 162 DAQILADVYIALTCGQEEIGFAL 184 >gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] Length = 823 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V+ D E + + Q V + E +E D +TG Sbjct: 6 DRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVEQYAT---DVNPHEHLDSHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T ++ + ++ + +I + I +N++FD + + Sbjct: 61 LTDKRLAKAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + R D +++ + Y + L L GI AH A +D Sbjct: 110 ELRTPRIDTVELAQVFY-------------PQLEKYNLGILCQELGIPLEQAHTALSDAQ 156 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L +R+K +L + L + Sbjct: 157 ATAELFLCMRQKMFQLPKGLLE 178 >gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031] gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031] Length = 256 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001] gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001] Length = 292 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 63/233 (27%), Gaps = 39/233 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +I D ET G D D + + + S F ++ A I Sbjct: 61 LPQTLLILDTETTGLDPEQDHCLEVGAILFHVPSRAVLSQISFLLPVRENP-----AEAI 115 Query: 61 TGITPQKAL-----RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 GI R G+ E + + +N FD + Sbjct: 116 NGIAAATTRLPQPWRQGLSCFEAMA--------ADADAVLAHNAAFDRQWFGRGE----- 162 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 L + A + S + I+WP+ + ++DLALA G+ AH Sbjct: 163 ----------------LPALGAPWICSMEDIRWPAERGLRPNPSVRDLALAYGVPVWAAH 206 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 A D ++ E + L R + Sbjct: 207 RALTDCIYLAQVLQRCEELEALLVVAREPRRLFRAQLSYAERHKAKQAGFRWN 259 >gi|315180012|gb|ADT86926.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218] Length = 238 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G V D V + + + + +P D ++ I GIT Sbjct: 48 FVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR--QKLDEHSIVIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + S + ++ + R + + R + + + Sbjct: 106 HNDIMDAP----DLSDIFEEVLEHLAGRVLVVHYHRIEREFLDRALKRRIGEGIEFPVID 161 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L+ ++ + P S +L + G+ H A D AT Sbjct: 162 TMEIETLIQKRLTAGLWNRLRGKKPE------SVRLGQSRMRYGLPAYTPHHALTDAIAT 215 Query: 185 LALVWLIREKKPK 197 L+ Sbjct: 216 AELLQAQIAHHYS 228 >gi|260364890|ref|ZP_05777461.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260879709|ref|ZP_05892064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260898816|ref|ZP_05907257.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308086617|gb|EFO36312.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308093346|gb|EFO43041.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308111638|gb|EFO49178.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 239 Score = 76.4 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 12/194 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + V +I + K D ++V I GIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + S + + + II + R + + + Sbjct: 107 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + I S GI + S +L G+ + H A D A Sbjct: 158 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAA 216 Query: 185 LALVWLIREKKPKL 198 L+ Sbjct: 217 AELLQAQMAHHYND 230 >gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] Length = 447 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 35/210 (16%) Query: 4 HFVIYDYETFGR---------------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 +++ +D+ET G + R + R ++ I++ + Sbjct: 6 NYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIR--P 63 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 + + E++ I GI+ +KAL +G + + +F P T + +N +FD ++ Sbjct: 64 NGFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIG-PRTKTLVAHNAQFDTSVLQS 122 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 R+ + +D + ++ + A G Sbjct: 123 EMLRHGIP------------LEQIDDLVIRCTLEMYRDRFMGPIKLTKLY-----ADIFG 165 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198 E NAH++ AD A + + + + Sbjct: 166 EEFDNAHNSLADSIACGRVYPYLLGQTERT 195 >gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] Length = 818 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 56/417 (13%), Positives = 116/417 (27%), Gaps = 47/417 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + I D E G + + Q V + E ++ + + +TG+ Sbjct: 2 KYAIVDLEATGTG-STAKIIQVGIVIL-EDGEIKQTYQT---DINPHEALEEHIKQLTGL 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+ + ++ +R I++ + +N++FD + +D Sbjct: 57 SDQRLSQAP-DFSQVAREIYELIED---AVFVAHNVKFDANLLAESLFWEGFDLLS---- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D +++ + ++ + L L I AH A +D A Sbjct: 109 ---PRVDTVELAQVVFPTYE-------------KYGLSSLCELLEIPLEQAHTAISDAMA 152 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L I+EK L + L + L + ++ L R+ L Sbjct: 153 TALLFLKIQEKIQSLPKPLLERLLI--LSNSLIYESRLVLEDCFEKMPEGRACDWLDCHG 210 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + + LS D L ++ ++ + P+ P Sbjct: 211 IYLKKQAKVGKERYLSTDFAKNISLLGLEERPEQQKFASLIEEAIKNPL--------PNF 262 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 + + + C E + + L+D+ + Q L Sbjct: 263 LQAQAGLGKTYGYLLPLLAHCQEKIVVSVPTKLLQDQIATGEGRAIEEVFQVAFHSLKSP 322 Query: 364 FFADVDRQIMDRILRTAPEQLSTLNL--------PFSDRRLPELFFRYRARNFPHTL 412 + R +L L E+ +R + F L Sbjct: 323 KSYIKLDTFYQSLERLDDNRLLNRCKMQLLVWLTETKTGDLEEIGQAHRYQAFFEEL 379 >gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS] gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS] Length = 240 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 54/199 (27%), Gaps = 28/199 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ ++ D ET G DR + V + + + + +A+ Sbjct: 1 MSRQ-IVLDTETTGLSAENGDRVIELGCV---ELFARKLTGNDLHIYFNPERESHEDALK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G+T A + I ++ I +N FD + F R Sbjct: 57 VHGLTTDFLRDKPK-FATLANDIIEYLRGAELII---HNAAFDVGFLNKEFERAGLPP-- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 +R A D + L L G++ N H A Sbjct: 111 ---------------LRTFVAEVTDTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGA 155 Query: 178 KADVYATLALVWLIREKKP 196 K D + + + Sbjct: 156 KLDAQLLADVYINLTRGQD 174 >gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1] gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169] gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1] gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1] gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1] gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8] gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7] gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1] gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72] gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E] Length = 432 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRD-VALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G + DR + V V R++ + + + D + + GI Sbjct: 214 LIMDTETTGFNEAGGDRIVEVGIVELVGRKF----TGNILHVYINPEKHMDDAVIQVHGI 269 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + AE +++I++F + + +N FD + F R ++ Sbjct: 270 SNAFVADKPK-FAEVAQQIYEFMAGSE---VIAHNAAFDMKFLNMEFNRAGLSNFA---- 321 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 N D L + + +Y + L L G+ + H A D Sbjct: 322 NSVKVTDTLALAKQMYPGQKN--------------SLDALVKRLGVGQKDRTFHGALLDS 367 Query: 182 YATLALVWLIREKKPKL 198 + + + + Sbjct: 368 EILAEVYLAMTGGQIAM 384 >gi|297243541|ref|ZP_06927472.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis AMD] gi|296888292|gb|EFH27033.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis AMD] Length = 338 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 23/190 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFC----KPADDYLPDPEA 57 +FV+ D ET G + +D+ + V+ +D + E+ + C + E Sbjct: 155 KNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEI 214 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + +TGIT GV + F ++GYN S + D Sbjct: 215 IELTGITSNMLESYGVRLDLALKEFIDFVEKLP--VLGYNVQFD---MSFLNSALSSLDE 269 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + N +D+ ++ F ++KL+ + I H A Sbjct: 270 RFDHSLSINKIFDISRFVKKEKKFL-------------KNYKLKTVLHEYNIAESVPHRA 316 Query: 178 KADVYATLAL 187 D T L Sbjct: 317 LLDARLTAHL 326 >gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis TAC125] gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas haloplanktis TAC125] Length = 236 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 13/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D D V ++I E++ I GIT Sbjct: 47 FVAMDFETTGLDSEADDIVSVGLVPF--NLQRIYCKHSRHWVVQPRRNLHEESIIIHGIT 104 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +F+R I + + ++ + + + N ++ Sbjct: 105 HSEVDDAP----DFNRIIEPLLAALSGKVVVVHYAAIERPFLNNALLLRLHEGIE----- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D +D+ + I S +L D + N H+A D AT Sbjct: 156 -FALVDTMDIEKRALTARQGLIGRLFNSKI-GSLRLNDCRKRYSLPAYNNHNALTDALAT 213 Query: 185 LALVWLIREKKPK 197 L+ + Sbjct: 214 AELLQAQLSHHYR 226 >gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] Length = 231 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + ++ + + F + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE +F + + +N FD + + Sbjct: 61 AEFLSTKPL-FAEVVDEFLEFIAE---APLVIHNASFDIGFINAELGKIARPPIPR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + S +L DL I++ H A D Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|330505789|ref|YP_004382658.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328920075|gb|AEB60906.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] Length = 235 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 51/199 (25%), Gaps = 18/199 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D V +D ++I E + E+V IT Sbjct: 45 LVALDVETTGLDPHQHAIVSLGLVPMD--LQRIRCAEARYWVVKPTSELSAESVTFHHIT 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + + + RNF D Sbjct: 103 HSDIRHAPR----LASVLDELLEALAGKVVVAHYRKIE---------RNFLDQALRLHLG 149 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++D M P S +L D G+ +AH A D Sbjct: 150 EGLMFPIIDTMELEARLHPRRSISWWDRLRGRQPLSIRLADSRERYGLPPYSAHHALTDA 209 Query: 182 YATLALVWLIREKKPKLFE 200 A L+ Sbjct: 210 LACGELLQAQAATHYPAHT 228 >gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58] gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58] Length = 228 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 22/192 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GRD V VD S E EA + G+T ++ Sbjct: 11 FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWL---VDPGVPIPAEAAEVHGVTTER 67 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G+ A+ I + + N +D R+ Sbjct: 68 AQAEGMPAAQGVAEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVID 127 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L ++ G+ NAH + AD A + Sbjct: 128 PFVLDKQ-----------------VDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAV 170 Query: 186 ALVWLIREKKPK 197 + + + + Sbjct: 171 QVADALAAQYEQ 182 >gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 174 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 28/194 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++ D ET G D + + + + T + + + Sbjct: 7 KDEYIVVDLETTGLDPLQGHEIIEIGVTEIKKG----DITLNYSRLIKPKGIISSFITNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I+ + + +E E + ++ ++ +N +FD + + + + Sbjct: 63 THISNEMVEGEKTLE-EVLPKFREYI---GDSVLIAHNAKFDIPFLNYYLEKMGLEPIKN 118 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 L++++ + L GI++V AH A AD Sbjct: 119 -------YICTLEMLKMNKMY------------PLKKKSLSAACDFYGIKNVEAHRAYAD 159 Query: 181 VYATLALVWLIREK 194 +AT L IR++ Sbjct: 160 THATALLFLKIRDE 173 >gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum DSM 44291] gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum DSM 44291] Length = 223 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 56/190 (29%), Gaps = 30/190 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A VR+D + STE EA + GIT +K Sbjct: 12 FDLETTSANPGEARIVTSALVRID--GSSVTSTEELA---DPGVEIPEEAAAVHGITTEK 66 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G E ++ +N R ++ Sbjct: 67 ARAEGRPHDEVLAETVAEIRKCWEDGLTLVVFNAPYDLTVLRR----------LTGTFTV 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D L + RA + L L+ G+ NAH+A +D A Sbjct: 117 DGPVFDPLVIDRAKDRYR------------KGKRNLGALSEIYGVRLDNAHEATSDATAA 164 Query: 185 LALVWLIREK 194 + W Sbjct: 165 ARIAWKQVRM 174 >gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] Length = 233 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I EK L + L + + V N LI Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 241 Score = 76.4 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V T + +P DPEA I Sbjct: 5 IVLDTETTGLNKTGPHYEGHNIIEIGAVEV-INRRLTGKTFHTYVRPNRQV--DPEAYQI 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + +E + +F I +N FD + + + Sbjct: 62 HGISDEFLSDKPR-FSEIFSQFFEFIRGSELII---HNAAFDIGFMDYE-FSALQQNIPK 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D L + R ++ L L I++ H A Sbjct: 117 TNTF-CTVTDTLALARRLFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 161 Query: 179 ADVYATLALVWLIREKKPKL 198 D + + + Sbjct: 162 LDAQILAEVYLAMTGGQTLF 181 >gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus pseudintermedius ED99] Length = 900 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 27/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D Q V + I+ D +T I Sbjct: 7 YAVVDLETTGNQADYDEIIQIGITFVRNN-QIIDHYHS---MIKTDLTIPTFIQALTSIE 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + +I+ CI +N+ FD + + F + Sbjct: 63 EEMLNQAPY-FKEVAHKIYSKIKD---CIFVAHNVNFDLNFLKRSFKKCHIH-------- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + S++L +LA + GI AH A D Y T Sbjct: 111 -----------YQPKKVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDAYTT 159 Query: 185 LALV 188 ++ Sbjct: 160 ARIM 163 >gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941] gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis biovar Abortus 2308] gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870] gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str. Tulya] gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str. 86/8/59] gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M163/99/10] gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94] gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1] gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1] gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292] gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915] gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M292/94/1] gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str. Ether] gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1] gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94] gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68] gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99] gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99] gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella melitensis biovar Abortus 2308] gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915] gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99] gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28] Length = 224 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 13 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 69 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 166 AYLTAGLYLHQQGVAKP 182 >gi|16262589|ref|NP_435382.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021] gi|307319072|ref|ZP_07598502.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti AK83] gi|14523204|gb|AAK64794.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306895179|gb|EFN25935.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti AK83] Length = 325 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 33/218 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G D + V + + E + V+ P+ +TGI Sbjct: 71 VILDTETTGLDARKCEIIEIGLVSFTYNEEGEIGDVVAVYGGLQQPTIAIPPDITRLTGI 130 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A + +I +N FD + Sbjct: 131 TDAMVAGQSIDIAAVQAIV------GPADLIIAHNAGFDRPFCEAFSD------------ 172 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + G KL L +G H H A D +A Sbjct: 173 -----------VFVRKAWACSVSEIDWSGRGFEGTKLGYLIGQSGYFHDG-HRAVDDCFA 220 Query: 184 TLALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ F LY ++++R + Sbjct: 221 LLGVLEQSSGGAALPPFAELYKASQRSRVRIFAENAPF 258 >gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058] gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058] Length = 252 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 73/255 (28%), Gaps = 29/255 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N V +D ET G +V+ DR + ++V+ K K + ++ I Sbjct: 5 LKNPIVFFDLETTGINVSTDRIVELTYLKVEPNGNKT----SKTIKINPEMHIPEQSSAI 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI Q + + + + + G+N++ FD F R D Sbjct: 61 HGIYDQDVADCP-TFRQIAANLAKDIE--GCDLAGFNSVNFDIPLLVEEFLRVGVDIDLK 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +DVM Y NAH ++AD Sbjct: 118 KRK-------FVDVMVIFY-------------KKEPRNLAAAYKFYCDKTLENAHSSEAD 157 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239 AT ++ K P L + + K D F + L Sbjct: 158 TLATFEILEEQLNKYPDLENSVDFLSEFSSHNKHADYAGRIIYDSRKREVFNFGKYKGML 217 Query: 240 IAPVA-WHPRYKDSV 253 + V P Y + Sbjct: 218 VQDVFRQDPNYYQWM 232 >gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] Length = 242 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 19/139 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G D DR + + E I+ F + A I Sbjct: 10 IVLDTETTGLDADGGDRIIEMGCI------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT +E + + F ++ +N FD + + D + S Sbjct: 64 GITVDMLKDKPK-FSEIADKFLDFI---GNSVLVIHNAVFDIKFIKME-----LDKIQKS 114 Query: 122 WDNGNSRWDLLDVMRAIYA 140 +++ D L + R + Sbjct: 115 YNSDFQVVDTLILARKKFP 133 >gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] Length = 242 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 27/202 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++D ET G D+ V++ + +S + E +TG Sbjct: 57 NVAVFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYSLARF---EKPLSNEIKELTG 113 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++ + +E +F + ++ + + ++ ++ F Sbjct: 114 LSEADLEKAP-PLSEVLISFLEFVKD---MPLVAHHANHEKSFMQHSCWKLFR------- 162 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++ +LD + W +L+DL I + H A D Sbjct: 163 --TPFKYRILDTSFLYRIADHNKSFW----------RLEDLCEFYSIPVKDRHHALGDAK 210 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T L + E+ KL Sbjct: 211 LTALLWCRLIEEVHKLGCSNLK 232 >gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH] gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH] Length = 203 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 20/191 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D D V V + F KP+ + E++ I ITP Sbjct: 32 VVVDTETTGLDRKKDEIISIGAVIVKNNRVLLSRKFHIFVKPSKEL--SIESIKIHKITP 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E + F N ++GY ++ + Sbjct: 90 DMLKNALEPET-AIKMFLNFIK--NRPLVGYYLEFDVAMLNKLTKRYLGIKLPNRQIEVS 146 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + + + + + HDA D T Sbjct: 147 AVYYD---------------KKIGLIPQKHIDLRFDSIMKDLNLPIIGKHDALNDAIMTA 191 Query: 186 ALVWLIREKKP 196 + ++ K Sbjct: 192 LMYIKLQNCKK 202 >gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278] gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Bradyrhizobium sp. ORS278] Length = 232 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 52/189 (27%), Gaps = 35/189 (18%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61 ++ D ET G D DR + V E I +VF EA + Sbjct: 4 IVLDTETTGLDALRGDRLVEIGCV------EIINRMPTGQVFHRYINPQRDMPAEAFAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + + + F + + +N FD + R + Sbjct: 58 GLSTEFLSDKPLFH----EVVEDFLAFIGDAPLVIHNASFDIGFINAELDRVKRAAIPRE 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + S +L DL I++ H A Sbjct: 114 RL-----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALL 154 Query: 180 DVYATLALV 188 D + Sbjct: 155 DAELLAEVY 163 >gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] Length = 255 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 57/203 (28%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 V+ D ET G + R + V + F D E Sbjct: 21 KRIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRRLTGRH--FHVYIKPDRAIQEE 77 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E + + +F + +N FD + F + + Sbjct: 78 AIGVHGITDEFLIDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFEK--LN 131 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 132 PAIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRTL 177 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200 >gi|86145828|ref|ZP_01064156.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222] gi|85836283|gb|EAQ54413.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222] Length = 238 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 19/201 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G D D V V + +I+ +D + E I IT Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLDNDSQINAETAVINHIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ +G + FF II + ++ + R + Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACVVEEKFISQYLLRCYG--------- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L ++ ++ + L G+ N+H+A AD +T Sbjct: 156 ----LRQLPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRDRYGLPEYNSHNALADAVST 211 Query: 185 LALVWLIREKKPKLFEYLYDY 205 L +++ E + Sbjct: 212 AELFLAQQKRVVPNDEVTLSF 232 >gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846] Length = 255 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186 >gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 244 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 57/194 (29%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR +FAG+ ++ + D EA + GIT Sbjct: 7 IILDTETTGLYADRGDRMLEFAGI---EMKKRQLTMNNLHLYIHPDRDIPEEAAAVHGIT 63 Query: 65 PQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ + E R+I F I +N RFD + F R S Sbjct: 64 LEQLEERNAPKFEQVGRQIADFLRGAELII---HNARFDVGFLNMEFARMGLPSIEE--- 117 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 D L + R + L L ++ H A D Sbjct: 118 LDCEITDTLAMAREKFPGQKA--------------SLDALCSRLDVDRSKRVLHGALIDC 163 Query: 182 YATLALVWLIREKK 195 + + ++ Sbjct: 164 ELLAEVYLAMTREQ 177 >gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] Length = 264 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V R E I E K DY+ +TGI Sbjct: 50 FSFIDLETTGSCPIKHEILEIGAVQV-RGGEIINRFETLVKVKSVPDYI-----AELTGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 104 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 156 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 157 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 199 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 200 SYKLFEICLLNLPSYIKTTMDLIDFSKCADTLIKRPPR 237 >gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1] gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1] Length = 244 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 86/271 (31%), Gaps = 33/271 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V++D ET G + DR Q + V + ++IE + EA+ + Sbjct: 1 MAKYVLFDTETTG-NQEADRIIQIGAMIVHSK-DEIEVFDELCSTQVP---ISIEAMEVH 55 Query: 62 GITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 ITP E F++R+ + + N + +NI FD + N Sbjct: 56 NITPDVIAGKPTYSETAFAKRVQELNTTEN--YLIAHNISFDLGMLEKEGFVN------- 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPD--GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + L+D +R PD + +K + + AHDA Sbjct: 107 -------HYTLIDTVRCTKHLLPDSPYHRLQYLRYSLGLYKTEAQEAQKLGITIKAHDAI 159 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 DV L+ + + F + + + +T + F + Sbjct: 160 GDVLVMKLLLSKLVVLTQEHFP---------GVNPMQKMAELTQTPVLMKTFKFGKYKDR 210 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLD 269 I +A + NL D + LD Sbjct: 211 DIEEIAREDMGYLRWMRSNLDLDEDMKFTLD 241 >gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] Length = 1480 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 55/413 (13%), Positives = 112/413 (27%), Gaps = 47/413 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G LD +F + + + + + ++ +T I Sbjct: 434 VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDIL---IKPKAKLKDFTKKLTNINE 490 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E F ++I+Q I+ +N FD + + + Y + Sbjct: 491 EMLENKPGIEVAF-KQINQIIKD---AILVAHNANFDYTFLSHWSQKLGYGKLENT---- 542 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183 D L + R IY S +L LA I + AH D Sbjct: 543 --IIDTLTISRIIY-------------PELKSHRLGSLAKRVNISYDPSVAHRGDYDADI 587 Query: 184 TLALVWLIREKKPKLFEYLY-----DYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNT 237 + + ++ K + N + L +N ++ A + Sbjct: 588 LADIYERMLDETRKKTKITIDSDWDKINPLNNIDNLNYHKNKGFHTNILVKNQAGLKELY 647 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL---DSVQLAKRLFTSHDELKGLVPVPIKE 294 L+ Y I + +++ +L S ++ + + I Sbjct: 648 KLVTKSHTTNFYSSPKIFKSDLIEVKKNNNLLFGSSCVNSEIFELARTSTLENLKQAISF 707 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354 + + + + + + +Q+ L + Sbjct: 708 YDYIEIQPISVYKNLLQNDSLDLDQLKQVITNIINIAKQENKLIIASSDCHYTNPELKQI 767 Query: 355 DVDSQLYDG---------FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398 G F + + D+ LRT E L + D L Sbjct: 768 REVYINAKGLGGIRHPLFDFNNKVKDYPDQYLRTTNEMLEEFSW-LEDENLIY 819 >gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] Length = 253 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 59/218 (27%), Gaps = 30/218 (13%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFEV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + V A+ + +F + +N FD + F + Sbjct: 66 HGISDEFLQDKPV-FADIADEFIEFIRGAE---LVIHNAPFDIGFMDYEFRKLNRGIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R I+ L L I++ H A Sbjct: 122 --AEFCTITDSLVLARKIFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 D + + + L + + + I Sbjct: 166 LDAEILSDVYLAMTGGQTSLAFSMESESSNTEQANAIQ 203 >gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] Length = 195 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F++ D ET G + + A +++++ + F+ A + I Sbjct: 11 FIVIDLETTGISPYKGAKIVEIAALKIEKGLKINPK-NSFYSLVNPLIPIPYSAYRVHKI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +E + + +F +T I NI FD + + + Sbjct: 70 SNEIVKDYPTIE----KVLPKFLEFLDTPFIIGQNISFDYSFIKY------FSDLYNFRL 119 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNAHDAKA 179 D +++ + I + L +L GIE + H A Sbjct: 120 KEFIIIDTINIAKKIA-------------PNLKRYNLDNLITYFGIENILGNGKRHRADF 166 Query: 180 DVYATLALV 188 D+YAT + Sbjct: 167 DIYATALIF 175 >gi|68500002|gb|AAY97945.1| hypothetical protein [Plasmid pMCBF1] gi|133711762|gb|ABO36582.1| hypothetical protein [uncultured bacterium pMCBF6] Length = 291 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 24/187 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D + + + A V D + + + +A + GI+ Sbjct: 121 VVLDTETTGLD-GVAQVIEIAIV--DWNGKTL-----INQRIRPTVAISVDAQRVHGISM 172 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + ++ YN + D W Sbjct: 173 DDLADCPA-WTDIAPEVRRVLE--GRPVVIYNASYDQRMLYQTAKSTAGLDDLDW----- 224 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184 D M + + L + + GIE AH A D T Sbjct: 225 IINLDTHCAMTMAAREYGATNK-------YGTISLANAVIQAGIEWQGAAHSALGDALTT 277 Query: 185 LALVWLI 191 LAL + Sbjct: 278 LALARKM 284 >gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 257 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 29/189 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D + R + V + S +C P D EA + G++ Sbjct: 31 IVLDTETTGFDPLSGHRLVEIGCVELFNHL-PTGSVFHRYCNPERDM--PEEAFKVHGLS 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F+ + F + +N FD + R + S Sbjct: 88 ADFLSDKPL----FAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPPLPMSRS- 142 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D + + R + + L L I+ H H A D Sbjct: 143 ----IDTVMMARKRFPGAQA--------------NLDALCRRFEIDNTHRTKHGALLDSE 184 Query: 183 ATLALVWLI 191 + + Sbjct: 185 LLAEVYLQL 193 >gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM 2243] gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM 2243] Length = 367 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D ET + DR V D+ +E + D V I GI Sbjct: 3 YTFFDVET--PNRRNDRICSIGAVVTDQDGTVVEKKSYL---VNPESSFDDINVRIHGIA 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + + FF V + +N RFD S + S+ Sbjct: 58 PVDVRNAKTFPELWYDSLSAFFPVDG---VVAHNARFDLSVLTKTLVSYDIPSPKMSY-- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + D KL + A GIE H A++D A Sbjct: 113 ------------------ACTLDMSKKIDFIGGGKLPHVCEALGIELERHHQAESDATAC 154 Query: 185 LALVWLIREKK 195 + + W + Sbjct: 155 MRVFWTLVGMA 165 >gi|163751907|ref|ZP_02159120.1| exonuclease [Shewanella benthica KT99] gi|161328190|gb|EDP99355.1| exonuclease [Shewanella benthica KT99] Length = 227 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 20/183 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E G + D+ + ++ ++ E K ++ I Sbjct: 39 QSKLIALDLEMTGLNPNHDQILSIGLIPIENNLLLLDKAEQKLIKVDGGV---GQSAAIH 95 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + + I F ++ ++ D + +N + + Sbjct: 96 GILDKHLQDA----IDIEEAISWFLEKTLGKVLVAHHAPLDINFLQNAMSKTVGEPV--- 148 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L V R D ++ S +L G+ AH+A D Sbjct: 149 ---KLCAIDTLAVERRRLLRKHDVLK-------EGSLRLGACRTRYGLPVYAAHNALVDA 198 Query: 182 YAT 184 A Sbjct: 199 LAC 201 >gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] Length = 929 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 28/205 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQREKGHHIIQFGCAII-KNMKVVKTYS---FMINPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHNEDVQGKD-DFSVYAPKIIEILK---GTVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLKIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 Y T L+ I K L + + Sbjct: 160 AYGTAVLLIKIIHKLESLPQATLNT 184 >gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] Length = 256 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + I +N FD + F Sbjct: 65 HGITDEMLADKPE-FKEIAQDFLDYINGAELLI---HNAPFDVGFMDYEF------CKLN 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + + D ++ L L GI++ H A Sbjct: 115 LNVKTDDICLVTDTLQMARQMY-----------PGKRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] Length = 256 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 244 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + +F + + + +N FD + N + Sbjct: 61 LEFLADKPL----FGDVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1] gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1] Length = 232 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 35/189 (18%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61 ++ D ET G D DR + V E I +VF + EA + Sbjct: 4 IVLDTETTGLDALRGDRLVEIGCV------EIINRMPTGQVFHRYINPERDMPAEAFAVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + + E +F + +N FD + R + Sbjct: 58 GLSSEFLADKPLFH-EIVEEFLEFI---GDAPLVIHNASFDIGFINAELDRVKRAAIPRE 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 D L + R + S +L DL I++ H A Sbjct: 114 RL-----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALL 154 Query: 180 DVYATLALV 188 D + Sbjct: 155 DAELLAEVY 163 >gi|146309112|ref|YP_001189577.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] gi|145577313|gb|ABP86845.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 233 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 56/208 (26%), Gaps = 23/208 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D ET G ++ D+ V +D + D + I Sbjct: 38 QQRFVVLDLETTGLNMRRDQVLAIGAVVIDNGAIDLAQQFERTLHLPDHQ--ASASTLIH 95 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P + R + F + + + FD ++ + S Sbjct: 96 GIAPSEVARGVEP----VEALLGFMEFVGSSPVLAFHAEFDQRMLARALKQHLGYRLQHS 151 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + LL I L + G++ H+A AD Sbjct: 152 FFDVAEIAPLLCPQSRIRQG-----------------GLDEWVAEFGLQVHQRHNASADA 194 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209 T L ++ K + + Sbjct: 195 LVTAELALMLFSKARRQGIDSLCELERQ 222 >gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 86-028NP] gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP] Length = 255 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 31/230 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYLG--------------KRNNLDALCERLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 D + ++ + LF+ + + + + V S Sbjct: 164 LDAEILADVYLMMTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSH 213 >gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] Length = 894 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 75/226 (33%), Gaps = 43/226 (19%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G DV D + + +++ ++ + + + L Sbjct: 512 IVVFDTETTGLDVFTDDIIEISAIKI-KEGKIVGEPLDLYIYTDKPIL------------ 558 Query: 65 PQKALRDGVVEAEFS-------------RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 QK E +++F + + +NI +D + N Sbjct: 559 -QKLGTKENPLYEIYHKKLASGELLKANDALNKFIEFVDNSTLIGHNINYDYHILDNCLK 617 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R D Y + + S+KL+ L +E Sbjct: 618 RYANDCMDNH----------------SYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEG 661 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 +N+H + DV AT++L+ +K + E D+ N Q+ K+ + Sbjct: 662 INSHQSIDDVKATISLINYCADKAQLVVEKQMDFLNHKQVFKVANK 707 >gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] Length = 184 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + DR + A V + + + IES ++ + I GI Sbjct: 7 YCVLDTETTGLNPYFGDRIIEVAIVPI-YKGKIIESW-IYHSLVNPHIKISALSEKIHGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +E + I + +T + +N + + Sbjct: 65 SNSEIESAPGLE-KILDNIRAY--AKDTIFVMHNARMDLSFLDIATKEVGQFPINVR--- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ +Y L+ L H A D Sbjct: 119 ----YIDTLEISLILYG---------------KKRSLESLVREFKFGEKVPHRALGDAIL 159 Query: 184 TLALVWLIREK 194 T + + EK Sbjct: 160 TAKVFLKLSEK 170 >gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735] gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735] Length = 906 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 81/224 (36%), Gaps = 19/224 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 I+D ET G DV D Q A V+V S + +D +P+ + Sbjct: 505 ETITIFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDHEIPEMLGDIVNP 563 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I ++ + + E +R + T ++G+N +D + N R ++ Sbjct: 564 IIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNA-DYDIHILANNLQREMPET----- 615 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D D + I G +KL+ L +E N+H A ADV Sbjct: 616 ALPNELSDYFDSLHLIRLLR----------PGLRQYKLKYLLEVLHLEGENSHLADADVN 665 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 AT +LV +K ++ + ++++ I L H Sbjct: 666 ATQSLVVFCYDKAKEIVGEQQAFIRHKRVQERIMTLRNNYLPHY 709 >gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] Length = 289 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 31/217 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + + + +++ + E I E F P Y+P+ +TGIT Sbjct: 73 FCVVDIETSGG-INSGQIIEIGALKL-QNGEIIGKFETFVHAP---YVPE-NISELTGIT 126 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + F + +N+RFD + Y Sbjct: 127 AEHLKNAPNLAF-VMEKFKVFL---GQSVFVAHNVRFDYGFIGATLEALGYGELLNH--- 179 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +D+ R A + + L L GI + + H A +D A Sbjct: 180 ---RLCTIDLARRTIA--------------SPKYGLGTLKEILGINNAH-HRALSDAIAA 221 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + +K P + D ++ K + +T Sbjct: 222 AEIFKYSLQKLPSEVKTTEDLIEFSKSAKTMKQLKIT 258 >gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] Length = 244 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + +F + + + +N FD + N + + Sbjct: 61 LEFLADKPL----FGDVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDGYGRIID 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] Length = 900 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 27/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D Q V + I+ D +T I Sbjct: 7 YAVVDLETTGNQADYDEIIQIGITFVRNN-QIIDHYHS---MIKTDLTIPTFIQALTSIE 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E + +I+ CI +N+ FD + + F + Sbjct: 63 EEMLNQAPY-FKEVAHKIYSKIKD---CIFVAHNVNFDLNFLKRSFKKCHIH-------- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + S++L +LA + GI AH A D Y T Sbjct: 111 -----------YQPKKVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDAYTT 159 Query: 185 LALV 188 ++ Sbjct: 160 ARIM 163 >gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10] Length = 927 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 28/205 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDTFAVVDLETTGTQREKGHHIIQFGCAII-KNMKVVKTYS---FMINPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHNEDVQGED-DFSVYAPKIIEILK---GTVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLKIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 Y T L+ I K L + + Sbjct: 160 AYGTAVLLIKIIHKLESLPQATLNT 184 >gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1] gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1] Length = 333 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 53/196 (27%), Gaps = 28/196 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + + + + P P + G+T + Sbjct: 22 VVDVETSGFRPGQARIVSVAALALSDDGNV---EKSLYSLLDPGVDPGP--THVHGLTAE 76 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + + + +N+ FD + + + Sbjct: 77 MLEGQP-TFGDVVGDLCEVLR---GRTLVAHNVGFDYSFLSAEAELVGAELPIDT----- 127 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 ++ + +L+ LA G+ + HDA D Sbjct: 128 ----VMCTVELARRLDLGLEN----------LRLETLAAHWGVTQMRPHDALDDAMVLAQ 173 Query: 187 LVWLIREKKPKLFEYL 202 ++ + + + ++L Sbjct: 174 ILKPVLVRAQERRKWL 189 >gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] Length = 256 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPGKRS--------------NLDALCERLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK] gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 345 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 53/196 (27%), Gaps = 28/196 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + + + + P P + G+T + Sbjct: 34 VVDVETSGFRPGQARIVSVAALALSDDGNV---EKSLYSLLDPGVDPGP--THVHGLTAE 88 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + + + +N+ FD + + + Sbjct: 89 MLEGQP-TFGDVVGDLCEVLR---GRTLVAHNVGFDYSFLSAEAELVGAELPIDT----- 139 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 ++ + +L+ LA G+ + HDA D Sbjct: 140 ----VMCTVELARRLDLGLEN----------LRLETLAAHWGVTQMRPHDALDDAMVLAQ 185 Query: 187 LVWLIREKKPKLFEYL 202 ++ + + + ++L Sbjct: 186 ILKPVLVRAQERRKWL 201 >gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] Length = 287 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|323499174|ref|ZP_08104152.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323315807|gb|EGA68840.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 239 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 12/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G D D V + + + +P E+V I GI Sbjct: 48 TFLAMDFETTGLDSEQDDIITIGTVPFTLNRILVNQAKHWTVRPR--KPLAEESVVIHGI 105 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L + + Q + + I+ + R + + + + Sbjct: 106 THSDVLDAP----DLTEVYPQVLAEMSNRIMVVHYQRIEREFFNRALQTRIQEGIEFPVV 161 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + L + + P S +L G+ H A D A Sbjct: 162 DTMNIETLWQQKENGGLLNKMRGRKPE------SVRLGASRSRYGLPQYTPHHALTDAVA 215 Query: 184 TLALVWLIREKKPK 197 T L+ + Sbjct: 216 TAELLQAQIAYHYE 229 >gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzicola BLS256] gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 244 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + +F + + + +N FD + N + Sbjct: 61 LEFLADKPL----FGEVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 461 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 72/252 (28%), Gaps = 30/252 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D ET G + ++ + + + D ++ I+ + +TGI Sbjct: 2 YTIVDIETTGNGIKGNKITEISIFKYD-GYDIIDEFTSL---VNPECEIPYFITGLTGID 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 H+ + I +++ FD +N D R Sbjct: 58 NDLVRDAPK----LIEISHKILEITKDTIFVAHSVGFDYGVIKNELKTIGLDFTRKK--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L +R G S+ L + A I + H A+ D +AT Sbjct: 111 -------LCTVRLSRKL----------IPGYNSYSLGKICSALKIPLTDRHRARGDAHAT 153 Query: 185 LALVWLI--REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 L + + +F+ + R++ + + ++ I Sbjct: 154 TLLFQKLLRAKDADAVFKKFLNARSQETTLPPSLPKQTYDNLPTVPGIYYFKNEKGKIIY 213 Query: 243 VAWHPRYKDSVI 254 V K V+ Sbjct: 214 VGKAINIKKRVL 225 >gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 76.0 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 19/139 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G D DR + + E I+ F + A I Sbjct: 10 IVLDTETTGLDADGGDRIIEMGCI------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT +E + + F ++ +N FD + + D + S Sbjct: 64 GITVDMLKDKPK-FSEIADKFLDFI---GNSVLVIHNAVFDIKFIKME-----LDKIQKS 114 Query: 122 WDNGNSRWDLLDVMRAIYA 140 +++ D L + R + Sbjct: 115 YNSDFQVVDTLILARKKFP 133 >gi|283783236|ref|YP_003373990.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis 409-05] gi|283441075|gb|ADB13541.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis 409-05] Length = 359 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 27/192 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-------CKPADDYLPDP 55 +FV+ D ET G + +D+ + V+ + IE + + Sbjct: 176 KNFVVIDCETTGLNSKVDKIIEIGAVKF-IDGK-IEEFQKLININCDSVSNFNKNNFIPN 233 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 E + +TGIT GV + F ++GYN S + Sbjct: 234 EIIELTGITSNMLESYGVRLDLALKEFINFVERLP--VLGYNVQFD---MSFLNSALSSL 288 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 D + N +D+ ++ F +++L+ + I H Sbjct: 289 DERFDHSLSINKIFDISRFVKKEKKFL-------------KNYQLKTVLHEYNIAESVPH 335 Query: 176 DAKADVYATLAL 187 A D T L Sbjct: 336 RALLDARLTAHL 347 >gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] Length = 256 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 31/202 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185 >gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66] gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66] Length = 814 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SNAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLNDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908] gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018] gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017] Length = 287 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V R E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-RGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] Length = 316 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 63/224 (28%), Gaps = 27/224 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + +R + A + F +P I GI Sbjct: 110 TVIVSDLETTGLNRKRERIIEIAAQDLAGGG-----YSTFQTLVNPGDVP-VTNTDIHGI 163 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117 R V E Q+ P + + +N FD + N F R Y+ Sbjct: 164 RTDMVCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEI 223 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 + D L + R + L+ L +AH Sbjct: 224 -----PHNWLLLDSLPLGREHMKSLDPTGK--------PKASLKVLQEHYSLTREGDAHR 270 Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 A +DV + L + K L + + + + ++ Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDIIAVMAKNK 314 >gi|315126562|ref|YP_004068565.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] gi|315015076|gb|ADT68414.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] Length = 233 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 13/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D D V + + + + +P D E++ I GIT Sbjct: 44 FVALDFETTGLDANSDDIVSVGLVPFNVNRIYCKESRHWVVQPRRDL--SEESIVIHGIT 101 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +R + ++ + + ++ N + Sbjct: 102 HSEVDEAP----DLNRILAPLLDALKGKVVVVHYAAIERHFFYNALLMRIKEGIE----- 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D +++ R + S +L D + H+A D AT Sbjct: 153 -FALVDTMEIERRALKARQGLLGRLFNSK-LGSLRLSDTRERYSLPLYQNHNALTDALAT 210 Query: 185 LALVWLIREKKPK 197 L+ + Sbjct: 211 AELLQAQLSYHYR 223 >gi|171743164|ref|ZP_02918971.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC 27678] gi|283455845|ref|YP_003360409.1| DNA polymerase III, subunit epsilon [Bifidobacterium dentium Bd1] gi|171278778|gb|EDT46439.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC 27678] gi|283102479|gb|ADB09585.1| DNA polymerase III, epsilon subunit [Bifidobacterium dentium Bd1] Length = 212 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 23/203 (11%) Query: 3 NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +V+ D ET G + + V + F +T Sbjct: 23 DTYVMLDTETTGLHPEEGATIIEIGALLVTP-GNENARP-RFEQLVDPQRPLPEFISRLT 80 Query: 62 GITPQKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GI+ +A + + + I +N FD + + D+ Sbjct: 81 GISDGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPDAN 140 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + + + ++ DL + I V H A Sbjct: 141 EF-----------------DCRWLCTKEMSWELNPRKRHHRVSDLIVDYRIGDVEEHRAL 183 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 +D + + + + Sbjct: 184 SDAIQEQMIYRALCREASMRGRW 206 >gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] Length = 236 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 23/189 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G D+ D V ++ +S EV + D + EAV + G+ Sbjct: 50 VVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVRQ---DRVGRSEAVAVHGLL 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G E E + ++ + I+ + FD I F Sbjct: 107 KKDIAG-GAGEVEAAEAFLEYI---GSSILVAQHASFDVAMLNRILSETF---------- 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182 R L + + + + + P + + ++L L GI + H A D + Sbjct: 153 ---RIRLFNGVVDTASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAF 209 Query: 183 ATLALVWLI 191 T L+ + Sbjct: 210 LTAQLLQRL 218 >gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] Length = 234 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 4 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 60 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 112 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 156 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 157 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 213 >gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. Rev.1] Length = 224 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 13 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 69 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165 Query: 181 VYATLALVWLIREKKPK 197 Y T L ++ Sbjct: 166 AYLTAGLYLHQQDVAKP 182 >gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1] gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1] Length = 216 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D Q A V R+D +T KP + DP+A+ + G Sbjct: 25 VVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPFEGANIDPKALELNG 84 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR + E E +++ + N ++ +N FD + R Sbjct: 85 IDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAAVQRCGIK 144 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + +A + AH Sbjct: 145 RNPFHPFTSFDTATLAGLAYGQTVLAKAL-----------------VASGEEWDGKAAHS 187 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 188 AIYDAEKTADLFCGIVNR 205 >gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118] Length = 926 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDIFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYS---FMINPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + ++ +I + + +N+ FD + ++ YD+ Sbjct: 63 TGISNGDVQKQKDFDF-YAPKIVKILQN---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLEIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I ++ L + + + Sbjct: 160 AYGTAILLIKIIKQLETLPQATLNTLS 186 >gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] Length = 926 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ V + Sbjct: 7 KDIFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYS---FMINPHREIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + ++ +I + + +N+ FD + ++ YD+ Sbjct: 63 TGISNGDVQKQKDFDF-YAPKIVKILQN---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLEIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 Y T L+ I ++ L + + + Sbjct: 160 AYGTAILLIKIIKQLETLPQATLNTLS 186 >gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum SK46] gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum SK46] Length = 226 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 62/203 (30%), Gaps = 33/203 (16%) Query: 2 TNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 ++F + +D ET G D + A VR+ Q + + Sbjct: 1 MHNFDPRRMLAFDLETTGTDPRTCKIVTSALVRLTEQGK-----DSTIMLADPGVEIPQA 55 Query: 57 AVFITGITPQKALRDGVVEAEF-SRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNF 114 A + GIT +KA +G E + I + + + N +D R+ Sbjct: 56 ASDVHGITTEKARAEGRPHDEVLADTIAGLKAAWRDGLTVVAYNAAYDLTVLRS------ 109 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + N D L P + D L D++ + A Sbjct: 110 --------QDPNFTVDGL-------VVDPFVLDNYFDPDRREKRTLTDVSRHYQVRLDGA 154 Query: 175 HDAKADVYATLALVWLIREKKPK 197 HDA D A + W++ + Sbjct: 155 HDATEDALAAARIAWVMARHYRE 177 >gi|148239379|ref|YP_001224766.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803] gi|147847918|emb|CAK23469.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803] Length = 272 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 29/192 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +I D ET G D D+ + + ++ + C D+ P A I Sbjct: 41 PSRLLIVDTETTGLDADRDQCLELGAILFSIPHRQVLAQMS--CLLPVDHNP---AEAIN 95 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P + R + + + + + +N FD + Sbjct: 96 RI-PAEVSRLDQPWGDGLAWFERMMASAD--YLVAHNAAFDRQWFGRGS----------- 141 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + + ++WP + + DLALA GI +AH A D Sbjct: 142 ----------LPEATRPWLCTLEDVRWPEARNLRARPSVIDLALAYGIPVWSAHRALTDC 191 Query: 182 YATLALVWLIRE 193 + + Sbjct: 192 MYLAEVFQRCDD 203 >gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99] gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99] Length = 218 Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 64/217 (29%), Gaps = 30/217 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V ++D + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N ++ +N FD + R Sbjct: 80 IDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A G+ A Sbjct: 140 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACHAAGMTFDSSQA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 H A D T L + + +L + K+ Sbjct: 181 HSALYDTLQTADLFCELVNRWKRLGGWPLPLAAKSDA 217 >gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] Length = 934 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 30/206 (14%) Query: 2 TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G + QF + + + +++ + Sbjct: 7 KDTFAVVDLETTGTQRENNNHIIQFGCAII-KNMKVVKTYS---FMINPHREIPLSVQNL 62 Query: 61 TGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 T I + + +++I + +N+ FD + ++ Y + Sbjct: 63 TRIHNEDVEKAPDFSHY--AKKIIAILED---TVFVAHNVNFDLPFLNYELMQHGYPAL- 116 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 N D +++ + + S+KL DL I+H+N H A + Sbjct: 117 -----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTSRLAIKHLNPHKADS 158 Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205 D Y T L+ I + KL + + Sbjct: 159 DAYGTAILLIDIIHRLEKLPQATLNT 184 >gi|268679463|ref|YP_003303894.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617494|gb|ACZ11859.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 203 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 48/183 (26%), Gaps = 20/183 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G + D V+V + F KP + + ++ I I Sbjct: 32 VVFDTETTGLNPKKDEILSIGAVKVRGNKILMSEKFELFVKPR--FEVNETSIKIHQIRN 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + F ++GY ++ + + Sbjct: 90 IDVQNA-LSPREAIEQFLHFIGARP--LVGYYLEFDVAMINKYLKAWLNIYLPNPQIELS 146 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D + DG + + G+ HDA D + Sbjct: 147 GLYHD---------------KKIKRIPDGVIDLRFDVMMKELGLPIFGKHDALNDAMMSA 191 Query: 186 ALV 188 + Sbjct: 192 MMY 194 >gi|229051643|ref|ZP_04195113.1| exonuclease [Bacillus cereus AH676] gi|228721754|gb|EEL73228.1| exonuclease [Bacillus cereus AH676] Length = 287 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 11/136 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FVI D ET G D+ + + + D + + + EA I Sbjct: 128 KDQFVILDTETTGL-TLRDQIIEISVI--DLAGKIL-----LNSLVKPTIIIPAEATSIH 179 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E + + + + ++ YN N S Sbjct: 180 GITNEMVHDAP-SWIEIYKELCEVTA--GKTLLIYNAEFDLGMIESTCITNNVEFKSFKS 236 Query: 122 WDNGNSRWDLLDVMRA 137 D +D R Sbjct: 237 TCIMKMYADFIDSKRW 252 >gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] Length = 233 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++D ET G DR GV++ + E + + F+ D +TGI Sbjct: 52 TVFDLETTGFFPQKQDRILSIGGVKI-KNNEITD--DTFYSFVYYDQPISETIRHLTGIQ 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L + + +FF+ + ++ + + ++ +R+F Sbjct: 109 EEDVLNAPAE----ADVLTRFFAFAEDDLFIAHHAAHEKGFMQDALWRSFR--------- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + +L+ IE H A D Sbjct: 156 ----------ATFQRRLIDTIFLTKLQPDLRDTAELEACCRYFNIEPAGRHHALHDAKLA 205 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + + Sbjct: 206 AELWIHSVNVMESMGIHTLK 225 >gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 1479 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 54/415 (13%), Positives = 107/415 (25%), Gaps = 51/415 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G LD +F + + + + + ++ +T I Sbjct: 433 VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDIL---IKPKSKLKDFTKKLTNINE 489 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E F + I+Q I+ +N FD + + + Y + Sbjct: 490 EMLENKPGIEVAF-KEINQVIKD---AILVAHNANFDYTFLSHWSEKLGYGKLENT---- 541 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183 D L + R IY S +L LA I + AH D Sbjct: 542 --IIDTLTISRIIY-------------PELKSHRLGSLAKRVNISYDPSIAHRGDYDADI 586 Query: 184 TLALV--------WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 + + ++ + N + L + + Sbjct: 587 LADIYERMLDDTRKKTKITIDSDWDKINPLNNIDNLN--YHKNKGFHTNILVKNQTGLKE 644 Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL---DSVQLAKRLFTSHDELKGLVPVPI 292 L+ Y I + +++ +L S ++ + + I Sbjct: 645 LYKLVTKSHTTNFYSSPKIFKSDLIEVKKNNNLLFGSSCVNSEIFELARTSTLENLKQAI 704 Query: 293 KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS 352 + + + K +++ RQ+ L + Sbjct: 705 SFYDYIEIQPISVYKNLLQNDSLDLDQLKKIITNIISIARQENKLIVASSDCHYTNPELK 764 Query: 353 SQDVDSQLYDG---------FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398 G F + + D+ LRT E L + D L Sbjct: 765 QIREVYINAKGLGGIRHPLFDFNNKVKDYPDQYLRTTNEMLEEFSW-LEDENLIY 818 >gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 63/191 (32%), Gaps = 20/191 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V E+ + P A I G+T Sbjct: 12 FDTETTGVDVEHDRIVSAALVVQRGTGSL---PEIRRWLVSPGVPVPPAATEIHGLTDAH 68 Query: 68 ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 R G A E +R I + + ++ N FD R+ Sbjct: 69 LQRHGRWPAPVMDEMARAIAEQTARGTPLVVM--NAPFDLTLLDRELKRH---------- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 NS +R++ P + L DL G+E AHDA AD A Sbjct: 117 -RNSSLAGYLSLRSMSVLDPRVLDKHLDRYRKGRRTLLDLCAHYGVELTGAHDAAADAAA 175 Query: 184 TLALVWLIREK 194 +L +V + + Sbjct: 176 SLHVVRAVGRR 186 >gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] Length = 295 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 29/186 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T ++I D ET G D DR + +++ ++ + + D + IT Sbjct: 126 TKAYIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIWQ---DIKLSEKISNIT 179 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + G E F + NI FD + R Sbjct: 180 GISDEDI-KKGKDEKNAINEFIDFI---GEDTLVGYNINFDIKFINESLKRQEKP----- 230 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N +D++ ++ F ++KL+ + GI H A DV Sbjct: 231 -KIKNMTYDVMQYVKNDKLFL-------------KNYKLETVIKEYGINKNVPHRALEDV 276 Query: 182 YATLAL 187 L Sbjct: 277 KIIQKL 282 >gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665] gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665] gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665] Length = 228 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 22/192 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GRD V VD S E EA + G+T ++ Sbjct: 11 FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWL---VDPGVPIPAEAAEVHGVTTER 67 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G+ A+ I + + N +D R+ Sbjct: 68 AQAEGMPAAQGVTEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVID 127 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L ++ G+ NAH + AD A + Sbjct: 128 PFVLDKQ-----------------VDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAV 170 Query: 186 ALVWLIREKKPK 197 + + + + Sbjct: 171 QVADALAAQYEQ 182 >gi|218709246|ref|YP_002416867.1| putative exonuclease [Vibrio splendidus LGP32] gi|218322265|emb|CAV18390.1| putative exonuclease [Vibrio splendidus LGP32] Length = 238 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 19/201 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G D D V V + +I+ +D + E I IT Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLDNDSQINAETAVINHIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ +G + FF II + ++ + R + Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACVVEEKFISQYLLRCYG--------- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + ++ ++ + L G+ N+H+A AD +T Sbjct: 156 ----LRAIPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRERYGLPEYNSHNALADAVST 211 Query: 185 LALVWLIREKKPKLFEYLYDY 205 L +++ E + Sbjct: 212 AELFLAQQKRVVPNDEVTLSF 232 >gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM 15436] gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM 15436] Length = 232 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 23/200 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + +D ET G D A DR A V E +E + F A+ + GI Sbjct: 7 NLLGFDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLF---NPGVEIPQSAIDVHGI 62 Query: 64 TPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 T ++A +G+ + + ++ + S ++G+N +FD N R + Sbjct: 63 TNERAQAEGLDPRVGLEQLAAKLVSYLSE-GAPLVGFNV-QFDVTLLENELRRYGLPTVA 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDA 177 G ++D + + +W KL DL GI + H + Sbjct: 121 E--RLGGRFAPIVDPL----VLDRELDRW-----RKGKRKLVDLLEVYGIAVDPDELHQS 169 Query: 178 KADVYATLALVWLIREKKPK 197 DV TL+L+ + K P+ Sbjct: 170 DVDVSMTLSLLQAMVRKYPQ 189 >gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] Length = 231 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 60/194 (30%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D D+ + V ++ + + + +A+ + GIT Sbjct: 4 ILLDTETTGFDPKNGDKIIEIGAV---ELIKRKLTHNNYHQYIQPERDVPIDAIEVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + F+ + F + +N FD + + ++ ++ Sbjct: 61 NEFLVGKPI----FADVVDDFMEYVAGAELIIHNAPFDVGFINQELSQ-LPNNKWGKIED 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R Y + L L I++ N H A D Sbjct: 116 HCTITDSLKMARKAYPGQRN--------------SLDALCKRFLIDNSNRTLHGALLDSE 161 Query: 183 ATLALVWLIREKKP 196 + + + Sbjct: 162 ILADVYLAMTGGQT 175 >gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] Length = 238 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 51/196 (26%), Gaps = 27/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G + + R + V + + + D A + G+T Sbjct: 8 VVLDTETTGLEASKGHRIIEIGCV---EMVNRRITRNNLHLYINPEREVDEGAAAVHGMT 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F++ + QF I +N FD + R ++ + Sbjct: 65 WDDLRDKPT----FAQIVDQFLDFCRGAEIIIHNASFDTGFLDAELARLGRGTFA---SH 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182 D L + R Y L L +H H A D Sbjct: 118 VACVTDSLAMARERYPG--------------KRNNLDALCERLMVPNKHRTLHGALLDSE 163 Query: 183 ATLALVWLIREKKPKL 198 + + + Sbjct: 164 LLAEVYLGMTRGQGSF 179 >gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32] Length = 255 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 58/203 (28%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 ++ D ET G + R + V + + F D E Sbjct: 21 KRIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRKLTGRH--FHVYIKPDRAIQEE 77 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E + + +F + +N FD + F + + Sbjct: 78 AIGVHGITDEFLIDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFEK--LN 131 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 D+ D L + + I+ L L GI+ H Sbjct: 132 PAIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRTL 177 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200 >gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] Length = 240 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 26/186 (13%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + T +C A + G++ Sbjct: 5 IVLDTETTGTEAKGGDRLIEIGAVEL-LNHIPTGRTFHRYC--NPQRPVSEGAFNVHGLS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V AE + F + + +N FD + + R ++ Sbjct: 62 DAFLADKPV-FAEIVGELLAFLADGR---LVIHNAPFDVGFLNMEYARLGANAPPPIQLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + + + L L GI++ H A D Sbjct: 118 D--VVDTLPMARRKHPGAAN--------------NLDALCARYGIDNTRRTKHGALLDAQ 161 Query: 183 ATLALV 188 + Sbjct: 162 ILAEVY 167 >gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353] Length = 814 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 32/207 (15%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTGSGA-KIIQIGIVLI-ENGIITKTYET---DVNPHEDLDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L I++K L + L + Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALLE 178 >gi|309779749|ref|ZP_07674506.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] gi|308921488|gb|EFP67128.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] Length = 216 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 50/183 (27%), Gaps = 14/183 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G +V D VR+ +P + PE++ + + Sbjct: 39 VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSEPLELLIRPQGEMR--PESICVHRLRN 96 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + GV + + F + ++GY +R + + + Sbjct: 97 RDL-DSGVSIEQAIHALLHFI--GSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVS 153 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + + D + + + +AHDA D Sbjct: 154 ALYYDYQ---------FEQLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAA 204 Query: 186 ALV 188 Sbjct: 205 LAF 207 >gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33] Length = 224 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 13 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 69 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDMLDQP 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + + +D R ++ S KL G + H A D Sbjct: 126 F------YCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 166 AYLTAGLYLHQQGVAKP 182 >gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 89 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + ++D ET G D D+ + +R D + +V K PE + + Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEITAIRTDL-IREYGRLDVRITK-NSGTKLTPEIINL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS 87 TGI G+ E + F S Sbjct: 59 TGINESMMRG-GIPEELAIPLLACFMS 84 >gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 244 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + +F + + + +N FD + N + Sbjct: 61 LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDNYGRIVE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] Length = 590 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + DR A + +D + P P V I +T Sbjct: 11 VLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATL---LNPGCDPGP--VHIHNLTR 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + S + Q + + +N FD + R Sbjct: 66 DRLHGAPTFDVTMSP-LQQMLA---GRTMVAHNATFDHGFLVEEARRLGATLPI------ 115 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + R + + R + + KL LA GI AHDA+ DV Sbjct: 116 DHRLCTVTLARRLQL-------------DVPNVKLGTLATYWGIRQRAAHDARDDVRTLA 162 Query: 186 ALVWL 190 + Sbjct: 163 EVFRR 167 >gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1] gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1] Length = 247 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 7/115 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +VI D ET G DR Q V + + ++ F+ D A+ + Sbjct: 1 MAKKYVILDTETTGVG-ENDRVIQLGYVVLGAKDVEV--HNEFYSS---DVPISFGAMEV 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 GITP + + +V +I +N FD + Sbjct: 55 HGITPDMLENKPACRDSVAYKRLCELNVSENYMIIHNAP-FDLGMLEKEGFNTQM 108 >gi|15891836|ref|NP_357508.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str. C58] gi|15160320|gb|AAK90293.1| polymerase epsilon subunit [Agrobacterium tumefaciens str. C58] Length = 326 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 39/244 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 VI D ET G D D + + D Q + T ++ + +TGI Sbjct: 74 VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + R+ + + +I +N FD + Sbjct: 134 TDEMVAGQSID----MMRLTSLIAHAD--LIIAHNAGFDRPFCEA--------------- 172 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + A++ + R G KL L +G H H A D +A Sbjct: 173 --------FSPIFRDKAWACSVSEIDWRVRGFEGNKLGYLIGQSGYFHDG-HRAVDDCFA 223 Query: 184 TLALVWLIREKKPKL-FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA------SRSN 236 L ++ R + F LY+ ++++R + H+ R Sbjct: 224 LLEVLEQRRSGQNITPFAELYEASGRSRVRIYAENSPFDMKDHLKKRGYRWSDGSDGRPK 283 Query: 237 TALI 240 + + Sbjct: 284 SWWV 287 >gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405] gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1] gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058] Length = 814 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SNAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|255292918|dbj|BAH90017.1| DNA polymerase III epsilon subunit [uncultured bacterium] gi|255293172|dbj|BAH90263.1| DNA polymerase III epsilon subunit [uncultured bacterium] Length = 297 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 38/188 (20%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G D D + A + + +S + PE I Sbjct: 44 LVVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQRLR---QPSKPIAPEITAI 100 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + ++ +N FD + Sbjct: 101 TGITNEMVAG------QIVDPAAVASFAAPASLVIAHNAAFDRRF--------------- 139 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + ++ Q +G KL LA A G + H A D Sbjct: 140 --------LERFNDVFSTKPWACSLSQIDWAAEGFEGTKLAYLAQAAGF-FYDRHRAMHD 190 Query: 181 VYATLALV 188 AT+ L+ Sbjct: 191 CLATVELL 198 >gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 205 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 20/192 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + +D V++ ++ +++ F + ++ I GI Sbjct: 34 YVVFDTETTGLNPKVDEILSIGAVKIKD--NRVLTSQTFEVFLQNSKEISSNSIKIHGIR 91 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + I +F + + + + FD + Sbjct: 92 PFDLKDAKTTK----EGIVEFLNFIGSRPLIGYYLEFDVAMINR-------------YTK 134 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L + M + D G + + I ++ AH+A D T Sbjct: 135 PLLGINLPNKMIEVSEIYFDKT-ISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMT 193 Query: 185 LALVWLIREKKP 196 + + ++K Sbjct: 194 AMIYLKLTKEKE 205 >gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] Length = 243 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 26/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D V+++ I + F+ + P+ +TG+ Sbjct: 60 IVMDIETTGFFPDQGDEIISIGAVKIENG--TINEDKKFYSLIRYEKTLSPQIEQLTGLR 117 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + +FF I ++ R + + +N +++F Sbjct: 118 GSQLKEAP-PLPEV---LIEFFKFCEARTIIAHHARHEKSFLQNASWKHFKAPL------ 167 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + R + +L+DL NGI + H A D Sbjct: 168 KHRIIDTSFLYRIA-------------EPELNLQRLEDLCSHNGIPVMERHHALEDARLA 214 Query: 185 LALVWLIREKKPKLFEYLYD 204 L K Sbjct: 215 AELWCCYISKVRDKGCMTLK 234 >gi|326314849|ref|YP_004232521.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371685|gb|ADX43954.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 222 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 9/119 (7%) Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ + D+ET G + R + A V + + ++ + P V + Sbjct: 3 SSRIAVIDFETTGMTPSQGARATEVAIVLM-EEGRPVDRFQSLM---KTGAWLPPFIVQL 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGITP E+ R +F + +N FD + R S Sbjct: 59 TGITPAMLDTAPPAES-VMREAARFV---GDAPMVAHNASFDSRFWAAELARADLPSPH 113 >gi|262341288|ref|YP_003284143.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272625|gb|ACY40533.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 256 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 28/251 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D E G ++ DR + + +++ + + T C P++ I GI Sbjct: 9 ICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKTW-LVC---PGIPIPPQSTAIHGIK 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + I + NT + GYN+ RFD R Sbjct: 65 NEDVEGK-LKFKDVAFSIFKMIE--NTDLAGYNSNRFDIPILAEEMLRAGISFDIKKHKT 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + E + AH +K D +AT Sbjct: 122 IDVQV--------------------IFHKMEPRTLSAAYKYYCSKELIKAHSSKEDAFAT 161 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALIAPV 243 ++ EK L + + + + + D+ + + +F + + + Sbjct: 162 YEILLSQLEKYENLKKDVKSLNQFSHQKNIADLAGFVKIDEEGNEIFNFGKYKGEKVFEI 221 Query: 244 AWHPRYKDSVI 254 I Sbjct: 222 FEKDPNYYEWI 232 >gi|259502638|ref|ZP_05745540.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169453|gb|EEW53948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 224 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 29/193 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFITG 62 FV D ET G + + V+ T F+ K + +TG Sbjct: 55 FVSLDLETSGLNPTTAQIISIGAVK-----RIAGHTTTFYRLVKLQSGKKLAGDIARLTG 109 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q+ +GV E + F I+GYN + FD+ + + R Sbjct: 110 LNSQQLATEGVAVKEALIDLQSFAKKLP--IVGYNLL-FDERFLQTAVIRAGI------V 160 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D+L ++ + F + + L + GI++ AH++ AD Sbjct: 161 QFNNKMVDVLPYVKTVDKFCDN-------------YHLATILTRYGIKNEQAHNSLADAT 207 Query: 183 ATLALVWLIREKK 195 AT+ LV + + Sbjct: 208 ATMKLVDKLIKIH 220 >gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] Length = 287 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 61/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L V E + + F + +N FD + F + Sbjct: 127 TYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 260 >gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] Length = 231 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + P D EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCVEI-YNRMPTGQVYHQYINPERDM--PAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V A+ + F + +N FD + R + Sbjct: 61 SEFLADKPV-FAQVADAFIDFI---GDAPLVIHNASFDIGFINAELARLSRAAIPRERL- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + S +L DL I++ H A D Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 442 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 24/230 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63 F D ET + Q VR R ++ +S + C P + V I GI Sbjct: 100 FTAVDVET--ANDNWGSICQIGAVRF-RDGQETDSR-SWLCTPPPGLEHFADINVSIHGI 155 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T A+ ++ + F ++ +N +FD R+ + Sbjct: 156 TADDVKGAPA-FADVAKELFDFL---GGDVLVAHNAQFDSTALRSGLLTAGAE------- 204 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + ++ + KL +A + HDA D A Sbjct: 205 --------VPTVPLACSLALSRDASKAKVISVRNHKLPTVAAHLSAPDFSHHDATEDARA 256 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 ++ + E+ + + +D + + P++ + Sbjct: 257 AGEIIARLAERFGHTGSIRDLFTAREFTLGRLDSEAILPVLRAHTAPTSG 306 >gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris CGA009] gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas palustris CGA009] Length = 232 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + ++ + + + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGRTYHQYLNPERDMPAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A + +F + +N FD + R Sbjct: 61 SEFLADKPL-FAHVADEFLEFI---GDAPLVIHNASFDIGFINAELSRLSRAPVPR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + S +L DL I++ H A D Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|260753544|ref|YP_003226437.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552907|gb|ACV75853.1| Exonuclease RNase T and DNA polymerase III [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 297 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 38/188 (20%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G D D + A + + +S + PE I Sbjct: 44 LVVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQGLR---QPSKPIAPEITAI 100 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + ++ +N FD + Sbjct: 101 TGITNEMVAG------QIVDPAAVASFAAPASLVIAHNAAFDRRF--------------- 139 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + ++ Q +G KL LA A G + H A D Sbjct: 140 --------LERFNDVFSTKPWACSLSQIDWAAEGFEGTKLAYLAQAAGF-FYDRHRAMHD 190 Query: 181 VYATLALV 188 AT+ L+ Sbjct: 191 CLATVELL 198 >gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus thermophilus CNRZ1066] gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 828 Score = 75.6 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN + I D E Q + + + I+ D V +T Sbjct: 6 TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGRVIDEFAS---DVNPHQKLDNHIVHLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + +E +R I + CI +N++FD + ++ Sbjct: 61 GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L L+ ++ AH A D Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YNLSYLSRVLNLDLAQAHTAIEDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L+ + +K L D Sbjct: 157 RATGKLLLHLMDKIASLPRQTIDM 180 >gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] Length = 230 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 13/136 (9%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + T + P D A + G++ Sbjct: 4 IVLDTETTGLDPDTGDRIVEIGCVEL-INHVPTGRTLHHYINPERDMPL--GAFEVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V + I +F ++ +N FD + R S Sbjct: 61 SEFLSAYPV-FGALADEILEFL---GDAVLVIHNASFDMKFINAELRRLNRPEIPMSQA- 115 Query: 125 GNSRWDLLDVMRAIYA 140 D + + R Y Sbjct: 116 ----LDTVQLARRKYP 127 >gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str. MIT 9303] gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9303] Length = 321 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 29/193 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +I D ET G D + + + + + F + A I Sbjct: 87 LPEMLLIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETN-----AAESI 141 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I P + R + + ++ +N FD + Sbjct: 142 NRI-PAEVTRLDQPWRQGLDYFQALLDAAD--LLVAHNAGFDRQWFGK------------ 186 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + + + I WP + ++DLALA G+ AH A D Sbjct: 187 ---------DQLPAVSKPWLCTMEDIAWPVDRQLRSRPSVRDLALAYGVPVWAAHRALTD 237 Query: 181 VYATLALVWLIRE 193 + ++ Sbjct: 238 CIYLAEVFARCKD 250 >gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] Length = 241 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 58/209 (27%), Gaps = 40/209 (19%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V W I + + + + EA + GI Sbjct: 4 IVLDTETTGFDPETGDRIVEIGAV---ELWNHIATGNTYHQYINPERMMPAEAFGVHGIG 60 Query: 65 PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P + A+ + F + + +N FD + Sbjct: 61 PDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVADS---HLVIHNASFDMKFLNAELRW 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + + D L + R + SP L L GI++ Sbjct: 118 MGLPEIPF-----DRAIDTLGMARRKFPGSPAT--------------LDALCRRFGIDNS 158 Query: 173 NA--HDAKADVYATLALVWLIREKKPKLF 199 N H A D + + K F Sbjct: 159 NRVLHGALLDAEILAEVYLELIGGKQPDF 187 >gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330] gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330] gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40] Length = 224 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P+A + Sbjct: 13 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDS--SPQAEAVH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 69 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARMGHRHGALED 165 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 166 AYLTAGLYLHQQGVAKP 182 >gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9313] gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9313] Length = 309 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 29/193 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +I D ET G D + + + + + F + A I Sbjct: 75 LPEMLLIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETN-----AAESI 129 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I P + R + + ++ +N FD + Sbjct: 130 NRI-PAEVTRLDQPWRQGLDYFQALLDAAD--LLVAHNAGFDRQWFGK------------ 174 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + + + I WP + ++DLALA G+ AH A D Sbjct: 175 ---------DQLPAVSKPWLCTMEDIAWPVDRQLRSRPSVRDLALAYGVPVWAAHRALTD 225 Query: 181 VYATLALVWLIRE 193 + ++ Sbjct: 226 CIYLAEVFARCKD 238 >gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] Length = 241 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 7/109 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D + P A+ + G+T Sbjct: 12 FDTETTGVDVEEDRIVSAAVVVQDSPG---GRPRITRWLVNPGVPVPPGAIEVHGLTDDH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 R+G A I + + ++ N FD R+ Sbjct: 69 LQRNGRWPAPVMEEIARSLAEQCAAGRPLVVMNAP-FDLTLLDRELRRH 116 >gi|223946833|gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| unknown [Zea mays] Length = 315 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 28/214 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G DR +FA VR D K + + P D + ++ GI Sbjct: 114 TILVFDIETTGFSRRDDRIIEFA-VR-DLMGGKNSTFQTLI-NPEKDV----KNTYVHGI 166 Query: 64 TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 R V E + Q+ + +N FD + F R + Sbjct: 167 NNSMLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEM 226 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 D L + + + S +S L+ L I +AH Sbjct: 227 -----PGDWLFVDTLPIAKQL---------VDSNGSKLSSVSLKFLRERYKIPLTGSAHR 272 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A DV ++ + + L + + Sbjct: 273 AMQDVTTLSYVLQKLTFELKLTVPQLLEKSFRAS 306 >gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] Length = 179 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 26/190 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F++ D ET G + G+ R + + S F + P +TGI+ Sbjct: 13 FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIVRSYSRF---VKPEQEIPPFITELTGIS 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +E + R +F + I +N +FD + + + + Sbjct: 70 NEMVANEDTIE-QVLPRFRKFI---GSNTIIAHNAKFDIKFLNYYLNKLGLEEIK----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + S G + + KL GIE+ NAH A +D AT Sbjct: 121 -----DYICTLELLKKVSSYGGK---------NKKLATACEYYGIENKNAHRASSDTQAT 166 Query: 185 LALVWLIREK 194 L IR+K Sbjct: 167 AELFLKIRDK 176 >gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays] gi|194690922|gb|ACF79545.1| unknown [Zea mays] Length = 315 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 28/214 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G DR +FA VR D K + + P D + ++ GI Sbjct: 114 TILVFDIETTGFSRRDDRIIEFA-VR-DLMGGKNNTFQTLI-NPEKDV----KNTYVHGI 166 Query: 64 TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 R V E + Q+ + +N FD + F R + Sbjct: 167 NNSMLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEM 226 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 D L + + + S +S L+ L I +AH Sbjct: 227 -----PGDWLFVDTLPIAKQL---------VDSNGSKLSSVSLKFLRERYKIPLTGSAHR 272 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A DV ++ + + L + + Sbjct: 273 AMQDVTTLSYVLQKLTFELKLTVPQLLEKSFRAS 306 >gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678] Length = 814 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ + ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLSQAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAESLFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|189500246|ref|YP_001959716.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides BS1] gi|189495687|gb|ACE04235.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides BS1] Length = 232 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 21/202 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G D + D V ++ I+ + F D + + +AV G+ Sbjct: 45 YVVFDTETTGFDTSRDLVISIGAVAINALH--IDVQDSFEVLIRRDNVGEKDAVTTHGLL 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +G E E + F + +T ++ + FD + +R + Sbjct: 103 CKDL-DEGGEEQE---SLDAFINYVSTGVLVAQHADFDVAMINRMLHRYYGFELFNH--- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182 + + + + P + S ++L L I + H A D + Sbjct: 156 ----------VIDTASLAKRLEKGPYFNLAHKSGEYRLDMLLDRYNIRMHDRHTAAGDAF 205 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T L ++ K Sbjct: 206 LTARLFQMLLAKAEHAGIRTLK 227 >gi|260768304|ref|ZP_05877238.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260616334|gb|EEX41519.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 193 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G V D V + + + + +P D ++ I GIT Sbjct: 3 FVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR--QKLDEHSIVIHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + S + ++ + R + + R + + + Sbjct: 61 HNDIMDAP----DLSDIFEEVLEHLAGRVLVVHYHRIEREFLDRALKRRIGEGIEFPVID 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L+ ++ + P S +L + G+ H A D AT Sbjct: 117 TMEIETLIQKRLTAGLWNRLRGKKPE------SVRLGQSRMRYGLPAYTPHHALTDAIAT 170 Query: 185 LALVWLIREKKPK 197 L+ Sbjct: 171 AELLQAQIAHHYS 183 >gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum variabile DSM 15176] gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum variabile DSM 15176] Length = 318 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 26/216 (12%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D Q + + +D ++S + KP PEA + IT + Sbjct: 122 IDIETTGLDFNQDEILQVSILDIDTGEVLLDS----YVKPY-FTEDWPEARRVNHITKEM 176 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + E R++Q + T +GYN FD+ + G S Sbjct: 177 VCNAPYI-YELLPRLNQVLAQVKTI-VGYNFTGFDNGFLT---------------RYGAS 219 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYATL 185 D V F+ ++ + L A G + AH++ AD AT Sbjct: 220 FNDETIVEDLSNIFAAIYGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATA 279 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 +E+ + + +K + + Sbjct: 280 FCYKKTQEEMYQELYQ--ENIHKRDCGFFDESYDAC 313 >gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812] gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812] Length = 827 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 29/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D E G A+ Q V + + +++ + + +T Sbjct: 6 SQKYAVVDLEATGAH-AMAEIIQVGIVII-ENKKIVKTYQT---DVNPHEPLTEHIINLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + ++ +++I+ S C+ +N++FD + Y+ Sbjct: 61 GITDEQLAKAP-DFSQVAQKIYNMISD---CVFVAHNVKFDANLLAEKLFLEGYE----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R L+D + F P + + L LA ++ +AH A +D Sbjct: 112 -----LRTPLVDTVELSQVFYPTLEK----------YTLGHLADVLQLDLTDAHTAISDA 156 Query: 182 YATLALVWLIREKKPKL 198 YAT L+ ++EK + Sbjct: 157 YATAQLLLKLKEKMASM 173 >gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 345 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR ++D + + P P V+I G+T Sbjct: 40 YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTL---VNPERDPGP--VWIHGLT 93 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + S + + ++ +N FD + R Sbjct: 94 TGVLKDAPL-FKDISDELSARLADR---VLVAHNAAFDWSMLAREYARA----------- 138 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + KL+ LA G+ AH A D Sbjct: 139 --------ERVAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQERAHHALDDARVL 190 Query: 185 LALVW 189 Sbjct: 191 AEAFR 195 >gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 324 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 29/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR ++D + + P P V+I G+T Sbjct: 19 YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTL---VNPERDPGP--VWIHGLT 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + S + + ++ +N FD + R Sbjct: 73 TGVLKDAPL-FKDISDELSARLADR---VLVAHNAAFDWSMLAREYARA----------- 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + + KL+ LA G+ AH A D Sbjct: 118 --------ERVAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQERAHHALDDARVL 169 Query: 185 LALVW 189 Sbjct: 170 AEAFR 174 >gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] Length = 222 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 28/198 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G D R + V +D +I F + EA + Sbjct: 1 MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIR--NTFHYYINPERDISKEAYKV 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G++ E QF + + +N FD + + +R + Sbjct: 59 HGLSRDFLSDKPK-FREIVDEFLQFI---DGAQLIMHNANFDMQFLNSELFRIRKSAIPN 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R + L L I+ + H A Sbjct: 115 T-----CVIDTLTLARKRFP--------------KERVNLDALCYKFRIDTSDRHLHGAL 155 Query: 179 ADVYATLALVWLIREKKP 196 D + + Sbjct: 156 KDAKLLALVYGRMMRGMQ 173 >gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans SPH-1] Length = 212 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 15/188 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G DV D+ VR+ E+I S+E ++V I + Sbjct: 35 VALDCETTGLDVRCDQIISIGAVRIV--GERILSSERLELLVRPSRSVPGDSVRIHRLRE 92 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + R G+ + ++ +F + ++GY + + R N Sbjct: 93 RDLAR-GLAIEDALAQLLRFI--GSRPLVGYY-----LEFDVAMIERVLRPWLGTGLPNE 144 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L P Q P + L G+ AHDA D Sbjct: 145 RIEVSALYYDHRFRQLLPWQQQAPE-----IDLRFATLMANLGLPQREAHDALNDAVMAA 199 Query: 186 ALVWLIRE 193 +R Sbjct: 200 LAFIKLRR 207 >gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] Length = 820 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 31/204 (15%) Query: 4 HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D E + D R Q V V + I S + +TG Sbjct: 7 KYAVIDLEAT--NAGSDARIIQIGIVIV-EDKKIINSFQT---DINPHSKLSEHIKSLTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT Q+ ++ + I + C+ +N++FD + +D Sbjct: 61 ITDQQLATAPE-FSQVAGEIFELIKD---CVFVAHNVKFDANLLSEALFFEGFDLLT--- 113 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R D +++ + + + L LA + +AH A +D Sbjct: 114 ----PRVDTVELAQVFF-------------PNLEKYNLGHLAKNMDLNLSHAHTAISDAL 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206 AT L I++K L + Sbjct: 157 ATAKLFIKIQKKIESLPRETLEMM 180 >gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] Length = 253 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 63/223 (28%), Gaps = 32/223 (14%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + V AE + +F I +N FD + F + Sbjct: 66 HGISDEFLQDKPV-FAEIADEFIEFIRGAELII---HNAPFDIGFMDYEFRKLNRGIPPT 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L + R I+ L L I++ H A Sbjct: 122 --AEFCSITDSLVLARKIFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 D + + + L + +++ +IQ + Sbjct: 166 LDAEILSDVYLAMTGGQTSL--AFSMDSDSKNIQQANEIQRIQ 206 >gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] Length = 231 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 29/198 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + E + + EA + G+ Sbjct: 4 IVLDTETTGFDPHSGDRIVEIGAV---ELFNHMPTGETYHQYINPERSMPQEAFQVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V + F I +N FD + W Sbjct: 61 DDFLRDKPV-FKRIGQAFLDFIGDAKLII---HNAAFDMKFLNAELGWMGLPQIPWEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L++ R + SP L L I++ + H A D Sbjct: 116 ----IDTLEIARRRFPGSPA--------------SLDALCRRFNIDNSSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFE 200 + + + F Sbjct: 158 ILAEVYLELIGGRQPDFS 175 >gi|127510985|ref|YP_001092182.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4] gi|126636280|gb|ABO21923.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 239 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 12/187 (6%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D+ET G +V D V + + + + +P + E+V I GIT Sbjct: 53 DFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQL--AEESVIIHGITHSDI 110 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 L + S Q I+ + + + R R Sbjct: 111 LDAP----DLSAIFEQVLEQMAGKIMVVHYQAIERLFLERALIR------RIHQGIEFPL 160 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D + + I G+ + D S +L G+ H+A D AT L+ Sbjct: 161 IDTMALESEIQKRQHGGLLQRLKGDKPGSVRLGQSRSRYGLPSYPPHNALTDAIATAELL 220 Query: 189 WLIREKK 195 Sbjct: 221 QAQIAHH 227 >gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] Length = 933 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] Length = 255 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + EF F N + +N FD + F + + Sbjct: 65 HGITDEMLADKP----EFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186 >gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49] Length = 814 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLNDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + +F + + + +N FD + N + Sbjct: 61 LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv. citri str. 306] gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + +F + + + +N FD + N + Sbjct: 61 LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] Length = 244 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V E+ S F D +P A +TG+T Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F + +F + + + +N FD + N + Sbjct: 61 LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R Y + L L G++ H H A D Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM 14684] gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM 14684] Length = 259 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 54/213 (25%), Gaps = 16/213 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +D ET G D DR A V + + A + Sbjct: 1 MRRLAAFDIETTGIDPQSDRIVT-AAVSLAGDARPTVDHDWL---VDPGVEIPAGATAVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT A +G AE I + + + N RFD R+ Sbjct: 57 GITTDHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLV 116 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + + + L + + AH A A Sbjct: 117 DRVGGPDGLIVVDPFVLDKQ----------FDRYRRGKRTLGAVCEHYRVRLDAAHTANA 166 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 D A + W + + +L + + Q+ Sbjct: 167 DAIAAARVAWRLAQAIAELRQTELRALHGQQVL 199 >gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] Length = 1045 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 56/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D Q A R+ +Q +E F E +T I Sbjct: 58 VVLDTETTGFSQNHDELTQIAAARM-KQGRIVEWFVTF---VNPGKPIPEEVARLTDIHD 113 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + I +N FD + W Sbjct: 114 EDVADAPSPDDARIQ----LAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDNLW----- 164 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D LD+ R S +L D+ A H A ADV A Sbjct: 165 ---IDSLDLARIA-------------LPRLKSHRLIDIVKAFDAPVST-HRADADVEALC 207 Query: 186 ALVWLIREKKPKLFEYLYDY 205 A ++ K+ + L Y Sbjct: 208 AAYRIMLAAIAKMPKDLVSY 227 >gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 187 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 50/177 (28%), Gaps = 19/177 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G DV +DR A V + +T V EA I GIT Sbjct: 14 LDTETTGLDVDVDRVVTAALV-----LREPGATHVRTWLLDPGVEIPAEATGIHGITNAH 68 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A G A I + + + N FD R+ + G Sbjct: 69 ATAHGSAPAVALDEIATLVVDAQRDGVPLVAYNAAFDLAILDTELVRHGLPTLAA--RLG 126 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADV 181 +LD + A +L DL + + H A DV Sbjct: 127 RPVRPVLDPLVLDRA---------WDPARDGKRRLVDLCARYEVLDVGRLHTADGDV 174 >gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] Length = 241 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 36/120 (30%), Gaps = 11/120 (9%) Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M + F +D ET G DV DR A V D V P Sbjct: 1 MMHWFEGPLAAFDTETTGVDVEQDRIVSAALVAQDTAG---GRVRVTRWLVNPGVPVPPG 57 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 A + G+T R+G A I + + ++ N FD R+ Sbjct: 58 ATEVHGLTDDHLQRNGRWPAPVMDEIARALAESCATGRPLVVMNAP-FDLTLLDRELKRH 116 >gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + L R + V + + + + + A+ + GIT Sbjct: 4 IFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHY---LNPEREIEEGALQVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L +F+ +H+ + + +N FD + + + Sbjct: 61 SEFLLDK----RKFADVVHELLEFIDGAELIMHNAAFDVAFLDHELGLANLPA------- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D ++ L L +++ H A D Sbjct: 110 ----------LCECCHSVTDTLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAE 159 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 160 LLAEVYLAMTRGQES 174 >gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] Length = 933 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I EK L + L + + V N LI Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 236 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI D ET G + A DR + V V + F + D A + G++ Sbjct: 4 VILDTETTGLNPATGDRVIEIGCVEV-IDRRLTDR--TFHYYINPERDIDAGAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V + ++ +F + I +N FD + N F + Sbjct: 61 REFLSDKPV-FGNIAEQLIEFV---DGAEIVIHNAAFDLGFLDNEFALLKRPPF---RGL 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182 + D L R ++ L L +H H A D Sbjct: 114 ASKVIDTLLDARQMFPG--------------KRNSLDALCERFSISNKHRTLHGALLDAQ 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206 + + + L L DY Sbjct: 160 LLAEVYIAMTRGQEDLSIDLIDYT 183 >gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355] Length = 814 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 233 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 28/192 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D E GR R + A V++D P + Sbjct: 1 MSGYAVVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATL---VDPGGPVGP--THVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI L + + R+ + + ++ +++ D + F R Sbjct: 56 GIAQADVLGAPR-FRQIAPRLLELLA---GRVLVGHHVTCDRAFLEREFARIGV------ 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + LL MR + A + L A G+ AH A D Sbjct: 106 ---ALPQVPLLCTMRLAR----------RQLPEAGGYGLSACVDAAGLGWFPAHTALGDA 152 Query: 182 YATLALVWLIRE 193 AT+ L+ R Sbjct: 153 RATVELLRHCRR 164 >gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330] Length = 814 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L I++K L + L + Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKVLVE 178 >gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont] Length = 222 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 63/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + T F +P + + +PEA+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNPEALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMATAERTGMK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A GI+ A Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACKAAGIDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTKQTATLFCELVNR 200 >gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] Length = 933 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] Length = 933 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I EK L + L + + V N LI Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|58616403|ref|YP_195533.1| DNA polymerase III subunit epsilon [Azoarcus sp. EbN1] gi|56315865|emb|CAI10509.1| putative exonuclease [Aromatoleum aromaticum EbN1] Length = 342 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 57/207 (27%), Gaps = 38/207 (18%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVFITG 62 D ET G D+ V + +E F E +TG Sbjct: 47 DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFE---DPGRPIPEEITRLTG 103 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + L + R+ + + ++ +N FD + Sbjct: 104 IRDEDVLEQ--TFDDA--RVEALIARAD--LVVAHNAPFDRGF----------------- 140 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +L ++ + P S KL+ LA G AH A D Sbjct: 141 ------LELRFPSFQKKWWACSQREAPWSQMMTGSTKLEWLAFQIGGCFYEAHRALVDAE 194 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN 209 TL ++ + + +L + + Sbjct: 195 VTLFILAQMGPGGRPILSHLLEVSGRK 221 >gi|54309681|ref|YP_130701.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914119|emb|CAG20899.1| putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 239 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + D V I + + +P + ++V I IT Sbjct: 49 FVAMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRPR--QKLNEQSVVIHNIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L + S I + ++ + R + + + Sbjct: 107 HNDILDAP----DLSEVIEPVLAALAGRVVVVHYRRIEREFLDRALKARIKEGIE----- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L++ I G + S +L G+ H A D AT Sbjct: 158 -FPVIDTLELEAQIQQRLNGGFWNKLKGKKPQSVRLAQARKRYGLPAYTPHHALTDAIAT 216 Query: 185 LALVWLIREKKPK 197 L+ Sbjct: 217 AELLQAQIAYHYD 229 >gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella suis ATCC 23445] gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella suis ATCC 23445] Length = 224 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 13 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 69 GFDNWMTCYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + +D R ++ S KL G + H A D Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 166 AYLTAGLYLHQQGVAKP 182 >gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 611 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 28/186 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G R Q A +V+ S P P V + G+T Sbjct: 22 YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSL---LDPGVDPGP--VHVHGLT 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + + + ++ +N RFD + R + Sbjct: 77 RERLAGAPQ-YQDVAGTLDELVRDR---VLVAHNARFDWGFLAAESDRARAP------LS 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + R L + R D + +L +A G++ AHDA+ DV Sbjct: 127 VDRRLCTLALSR-------------RLDLPVSDLRLATVAAHWGVQQRRAHDAEDDVRVL 173 Query: 185 LALVWL 190 + ++ Sbjct: 174 VEVLRH 179 >gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408] Length = 814 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1] Length = 933 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I EK L + L + + V N LI Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03] Length = 828 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN + I D E Q + + + I+ D V +T Sbjct: 6 TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGRVIDEFAS---DVNPHQKLDNHIVHLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + +E +R I + CI +N++FD + ++ Sbjct: 61 GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L L+ ++ AH A D Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YNLSYLSRVLNLDLAQAHTAIEDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L+ + +K L D Sbjct: 157 RATGKLLLHLMDKIASLPRQTIDM 180 >gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 830 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 33/198 (16%) Query: 1 MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M N +V+ D E + + Q V + E I D Sbjct: 1 MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIINQYAT---DVNPHEPLDSH 55 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TG+T ++ ++ + +I + I +N++FD + Sbjct: 56 IKELTGLTDRRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ R D +++ + +Y + L L GIE +AH Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151 Query: 177 AKADVYATLALVWLIREK 194 A +D AT L+ +R+K Sbjct: 152 ALSDAQATAELLLYMRQK 169 >gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] Length = 933 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b] gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b] Length = 222 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 68/213 (31%), Gaps = 30/213 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + T F +P + + +PEA+ TG Sbjct: 20 VVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAAAERVGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A G++ A Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACKAAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 H A D T L + + +L + Y + Sbjct: 181 HSALYDTEQTAILFCELVNRWKRLGGWPLAYSD 213 >gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] Length = 245 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I D ET G DR +FAG+ + + +S + P D EA Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + A+ ++I F I +N +FD + F R S Sbjct: 58 VHGLTIEVLEAKNAPPFAQVGKQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G D L + R ++ L L ++ H Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176 >gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150] Length = 814 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLNDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] Length = 936 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 70 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 121 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 122 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 166 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I EK L + L + + V N LI Sbjct: 167 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 223 >gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] Length = 222 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 51/198 (25%), Gaps = 28/198 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G D R + V +D +I F + EA + Sbjct: 1 MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIR--NTFHYYINPERDISKEAYKV 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G++ E QF + +N FD + + +R + Sbjct: 59 HGLSRDFLSDKPK-FREIVDEFLQFIDRAQ---LIMHNANFDMQFLNSELFRIRKSAIPN 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R + L L I+ + H A Sbjct: 115 T-----CVIDTLTLARKRFP--------------KERVNLDALCYKFRIDTSDRHLHGAL 155 Query: 179 ADVYATLALVWLIREKKP 196 D + + Sbjct: 156 KDAKLLALVYGRMMHGMQ 173 >gi|319954745|ref|YP_004166012.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola DSM 14237] gi|319423405|gb|ADV50514.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola DSM 14237] Length = 220 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 61/188 (32%), Gaps = 22/188 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G D + DR V+ V +Q + EVF + +A I GI Sbjct: 36 YTVLDTETTGFDYSNDRILCIGAVKLVQQQIAIRDGFEVFVTQQVYGK----DAAPIHGI 91 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 V + QF + +I ++ FD N RN + ++ Sbjct: 92 ----LKNSTVPRVTELEALEQFITYVGNSVIIAHHAIFDLNMINNALLRNGLPELKNTYL 147 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + I + ++ L +LA I + H A D Y Sbjct: 148 DTS-------------HLYKKTIIRSNLITRKENYTLDELADKFSISKKDRHTAMGDAYI 194 Query: 184 TLALVWLI 191 T L I Sbjct: 195 TAILFLKI 202 >gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] Length = 936 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 70 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 121 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 122 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 166 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I EK L + L + + V N LI Sbjct: 167 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 223 >gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 241 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 27/222 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G DR + V + EAV + G+T Sbjct: 4 IFLDTETTGLSHESGDRVVELGCVEM-VNRRLTGR--NLHHYFNPQRANHEEAVRVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ F I +N FD + R + + Sbjct: 61 DAFLADKPL-FSAVAQEFVDFVRDAE---IIAHNANFDVGFLDAELKRIGHPPLK---QL 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + + L L +++ + H A D Sbjct: 114 VDKVTDSLVMAREQFPGKAN--------------SLDALCRRLEVDNTSRTVHGALLDAG 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 + + + L +++ Q+ + + ++T V Sbjct: 160 LLAEVYIRMTRGQNSLVIDDSPVQSEQQVEQPLIAVDLTAFV 201 >gi|30387346|ref|NP_848425.1| hypothetical protein CfMNPVgpORF114 [Choristoneura fumiferana MNPV] gi|30270080|gb|AAP29896.1| unknown [Choristoneura fumiferana MNPV] Length = 232 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 22/212 (10%) Query: 3 NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIEST-EVFFCKP-----ADDYLP 53 +V D ET G + + + + V R +++ V C Sbjct: 5 QTYVFLDLETTGLPKFQNNKTQITELSLQCVSR--KELLRPGAVRVCNKLTMCFEPTLSI 62 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFY 111 EA+ +T ++ + + + I F S C++ YN + FD Sbjct: 63 SEEALALTQLSMENLNGQPKFDTKVVDCIESFLSLLASPVCLVAYNGLSFDFPILYKHLK 122 Query: 112 RNFY-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 N + D+Y + + + W D A SFKL DL Sbjct: 123 DNAFQLEVHCADAYHAMYAIIDGSGSTAMNRSKSGLVTVRQCPWKRGDRPARSFKLMDLY 182 Query: 165 LAN--GIEHVNAHDAKADVYATLALVWLIREK 194 + + H A+ D + L + Sbjct: 183 KTHVTQLAGDKCHRAENDCSMMVELAKKFANE 214 >gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] Length = 223 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 26/217 (11%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F ++D ET G + D+ +GV+V + ++ I++ PE I Sbjct: 26 TFSVFDTETTGLNYNSGDKIISVSGVKV-QNFQ-IDTEGKLDEFCDPMVEITPENEQIHH 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + + FF ++ +N++FD + + +S Sbjct: 84 ISNRMVKGKPNI-YDLESKFRGFFKRS---VLVAHNVKFDCNFLISNLSHTKLESRIREA 139 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKAD 180 LD + PD S++L L I H + H + D Sbjct: 140 VK-------LDTVLYSAGVYPDL----------KSYELSALCDELNITHHDQLRHSSLGD 182 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 T L + +K +K + L++ Sbjct: 183 SIITARLFIHLLKKSKAQNIKEILNISKFGQKVLLNK 219 >gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] Length = 231 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 50/206 (24%), Gaps = 29/206 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + F A + G+ Sbjct: 4 IVLDTETTGFEPESGDRIVEIGAVEL-YNHMPTGR--TFHKYINPQRAMPEAAFAVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++ F + +N FD + W Sbjct: 61 DDFLRDKPL-FAEIAQEFLDFVQDAR---LVIHNAAFDMKFLNAELGWLKLPQLPWDQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L I++ H A D Sbjct: 116 ----VDTLAIARKKFPGSPA--------------SLDALCRRFQIDNSARTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 + + + F K Sbjct: 158 ILAEVYLELIGGRQPDFVLATGPTAK 183 >gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 29/189 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D + R + V + +C P D EA + G++ Sbjct: 4 IVLDTETTGFDPLSGHRLVEIGCVELFNHL-PTGEVFHRYCNPERDM--PEEAFKVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ + F + +N FD + R + + S Sbjct: 61 VEFLSDKPL----FAEIVADFLEFIGDAPLVIHNAEFDMRFINAELARLGFPALPMSRS- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D + + R + + L L I+ H H A D Sbjct: 116 ----IDTVMMARKKFPGAQA--------------NLDALCRRFEIDNTHRTKHGALLDSE 157 Query: 183 ATLALVWLI 191 + + Sbjct: 158 LLAEVYLQL 166 >gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] Length = 933 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 1149 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N F + D+E G A DR + V +D E ++ + +P + F+ Sbjct: 5 NKFAVVDFEATGLSAA-DRIVEIGVVLLDNNLEVEQTWDTL-VQPNREVPNS----FVHK 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF-YDSYRWS 121 +T + E S + + + +N F++++ R F R S Sbjct: 59 LTTADLEKAPTFEG-ISAKFASLL---DGRTVVAHNASFEEHFMRQEFSRLGVLWPNYGS 114 Query: 122 W 122 W Sbjct: 115 W 115 >gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 188 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 35/193 (18%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + N + + D ET G + + + VRV + E EA + Sbjct: 23 LKNDYTVIDIETSGLNPEKNEILELGAVRVRDN-IVVAEYEQL---IRPRKSISKEATKV 78 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+T + + + VE I F ++ +NI FD + RN Sbjct: 79 NGLTKRMLIDEPFVE----DVIWDFKDFLGKDVLIGHNIEFDLEFIRNQL---------- 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D L + R + +L D+ I H + +D Sbjct: 125 --PIRNKYIDTLPLAR--------------KLLKIKRHRLIDICHHYKIP-EPNHRSISD 167 Query: 181 VYATLALVWLIRE 193 AT ++E Sbjct: 168 CNATHLCYQKMKE 180 >gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] Length = 464 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 29/176 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET G DR + A + + + +TGI+ Sbjct: 25 VILDLETTGGHFYADRITELAFLHFWQ-----GKITAVQQLVQPNMPISGFVRDLTGISD 79 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + A+F+ ++ ++ +N RFD + R+ RN + Sbjct: 80 EMLQGQP-TFAQFAPQVLPLLR---GSLLIAHNSRFDYTFLRHECRRNGFAFATAG---- 131 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L ++ P+ + L + +G+ + H A +DV Sbjct: 132 ------LCSVQLSRKLYPEFFK----------HNLDSIIERHGLAVASRHRAMSDV 171 >gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays] Length = 315 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 28/214 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G DR +FA VR D K + + P D + ++ GI Sbjct: 114 TILVFDIETTGFSRRDDRIIEFA-VR-DLMGGKNSTFQTLI-NPEKDV----KNTYVHGI 166 Query: 64 TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 R V E + Q+ + +N FD + F R + Sbjct: 167 NNSMLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEM 226 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 D L + + + S +S L+ L I +AH Sbjct: 227 -----PGDWLFVDTLPIAKQL---------VDSNGSKLSSVSLKFLRERYKIPLTGSAHR 272 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A DV ++ + + L + + Sbjct: 273 AMQDVTTLSYVLQKLTFELKLTVPQLLEKSFRAS 306 >gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] Length = 232 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + ++ + + + EA + G++ Sbjct: 4 IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGRTYHQYLNPERDMPAEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A + +F + +N FD + R Sbjct: 61 SEFLADKPL-FAHVADEFLEFI---GDAPLVIHNASFDIGFINAELSRLSRAPVPR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + S +L DL I++ H A D Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|312599149|gb|ADQ91172.1| hypothetical protein BpV2_005c [Bathycoccus sp. RCC1105 virus BpV2] Length = 432 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 63/443 (14%), Positives = 121/443 (27%), Gaps = 58/443 (13%) Query: 4 HFVIYDYETFGRD-------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50 +++ +D ET G R A V+ + ++ S P Sbjct: 2 NYISWDTETTGLPMGYTKSTPDNVHLFDRCRMLTLAFVKYSSKGRELSSYHGL-VYPDTF 60 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 +P E+ + GIT + AL G + S NT I+ +N FD+ + Sbjct: 61 NVPQ-ESTNVHGITHEHALHKGQPFGYVYAAFKEAVS--NTSILVAHNSSFDENCFFSEC 117 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 YR +D +D ++ + P KL + Sbjct: 118 YRRGFD------TEPFKHVHFVDTLKMARSVLPGLHN----------HKLLTVYKYYFGH 161 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYD--YRNKNQLRKLIDIQNMTPLVHVSG 228 +AHDA D A + +L+R+ + K+ + + + + +I + V Sbjct: 162 EFDAHDALNDSRACGKIYFLLRDNEFKMKDVGIEKVTLKASDIASIIGMNPYKKPKEVLD 221 Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288 A AP + + K+ + + K + +S E K Sbjct: 222 NLWAK------YAPETFEGKTKEQEALDTIQKCDASKFLFKDAETYKSMNSSDIERKFNA 275 Query: 289 PVPIKEVHLNKCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR----- 340 + N L+ K N L++ Sbjct: 276 VSNQLHMKSNLSKPDIKLVEQHLRKTLFTNHGTRHEDTTASNYEDLKEDETFYKYDVCSI 335 Query: 341 ------FKAIYNKPYTSSSQDVDSQLYDGFFAD---VDRQIMDRILRTAPEQLSTLNLPF 391 ++ + G F + + L + Sbjct: 336 EGTTYRICGRIDRIRDDKTIIEIKNRTRGLFNSVRLYEEIQCQVYMEMLDLDKCELIEQY 395 Query: 392 SDRRLPELFFRYRARNFPHTLSE 414 +D+R L +R + + L Sbjct: 396 NDKRKTYLIYRDQMKWKSEILPA 418 >gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter alkaliphilus AHT 1] gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter alkaliphilus AHT 1] Length = 198 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 32/201 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63 D ET G + + A R +I + P A + G+ Sbjct: 14 FVDVETTGLSPRKEEIVELAICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHGL 73 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + RI I +N FD + Sbjct: 74 RMADLRGKQLD----TARIEAILHSAE--FIVAHNASFDRGFVAR--------------- 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + + + G S LQ+L A+ I+ AH A+ DV A Sbjct: 113 --------LFPVSGRKQWLCSMSGIDWKGKGFPSRGLQNLLRAHRIDAGRAHRAEDDVLA 164 Query: 184 TLALVWLIREKKPKLFEYLYD 204 TL L+ + L + Sbjct: 165 TLKLLACCDHSGKTYSKELIE 185 >gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057] Length = 814 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] Length = 819 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 29/207 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E + + Q V + + +++ E D +T Sbjct: 5 KRKYAVVDLEATSAS-SNAKIIQVGIVLI-ENGQIVKTYET---DVNPHEKLDSHICQLT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T ++ R ++ +R I++ I +N++FD + ++ Sbjct: 60 GLTDKRLRRAP-DFSQVAREIYELIED---AIFVAHNVKFDANLLAEALFWEGFELVT-- 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + + + L L I +AH A AD Sbjct: 114 -----PRVDTVELAQVFFPTFE-------------KYNLGILCEQLDIPLKHAHTALADA 155 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNK 208 AT L I+EK KL + L +Y K Sbjct: 156 SATATLFLKIQEKIQKLPKELVEYLLK 182 >gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] Length = 230 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D A DR + + + ++ + F A + G++ Sbjct: 4 IIFDTETTGFDPASGDRLVEIGCI---ELFNRVPTGRTFHAYYNPQRSMPAAAEAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F + + + + +N RFD + + Sbjct: 61 DGFLRDKPL----FGHGVQELLAFLEDSHLVAHNARFDFGFLNHELKLCGLPEVSM---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D + + R I+ + L L GI+ H H A D Sbjct: 113 -DRMIDTVAIARQIHPGA--------------KHSLDALCTRYGIDRSHRIKHGALLDAE 157 Query: 183 ATLALV 188 L Sbjct: 158 LLAQLY 163 >gi|38233670|ref|NP_939437.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae NCTC 13129] gi|38199931|emb|CAE49599.1| Putative DNA polymerase [Corynebacterium diphtheriae] Length = 234 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 57/217 (26%), Gaps = 43/217 (19%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A VR+D A + GI+ + Sbjct: 19 FDLETTSANPFEARIVTSALVRIDSSG---AHPVELLA--DPGVEIPEAASKVHGISTEY 73 Query: 68 ALRDGVVEAEFSR----RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A G + I+ + T ++ Y +D Sbjct: 74 AREHGEPHEAVLKRTVDEIYAAWEEGFTLVV-----------------------YNAPYD 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D + + P I L DL G+ NAH+A +D A Sbjct: 111 LTVLRQLTGDFVVKGPVYDPYLIDRIMDRFRKGKRTLTDLCSVYGVRMDNAHEATSDALA 170 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 + W+ R K+ L + M Sbjct: 171 AARIAWMQA-----------KKRFKDDLAAYSHDELM 196 >gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110] gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110] Length = 235 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 28/199 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ ++ D ET G DR + V + + + + +A+ Sbjct: 1 MSRQ-IVLDTETTGLSAENGDRIIELGCV---ELFARKLTGNDLHIYFNPERESHEDALK 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G+T A + I ++ I +N FD + Sbjct: 57 VHGLTTDFLRDKPK-FATLANDIVEYLRGAELII---HNAAFDVGFLNKELELAGLPP-- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 +R+ D + + L L G++ N H A Sbjct: 111 ---------------LRSFVGEVTDTLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGA 155 Query: 178 KADVYATLALVWLIREKKP 196 K D + + + Sbjct: 156 KLDAQLLADVYINLTRGQD 174 >gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] Length = 1428 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 24/200 (12%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + R Q A D + I + + +P +P Sbjct: 2 YLIFDTETTGLPRDYNAPMSDVDNWPRLVQLAWQLHDEKGNLISNHN-YIIRPEGFTIPY 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A + GI+ ++AL++G + T + +N+ FD + + R Sbjct: 61 -NAEKVHGISTKRALKEGHDLKQILGIFEGDVKK--TKYLVGHNVEFDINVVGSEYLRAE 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + D+ AI +WP+ + G +A Sbjct: 118 ATMPLTADQLDTK--DISTEFCAIPGGRGGKFKWPTLTELHQKL--------FGKGFGDA 167 Query: 175 HDAKADVYATLALVWLIREK 194 HDA DV AT + + + Sbjct: 168 HDAAYDVDATARCFFGLITQ 187 >gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] Length = 243 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 30/200 (15%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ ++ D ET G DR + V V+R+ + P+A+ Sbjct: 1 MSRQ-IVLDTETTGLSAIDGDRLIELGCVELVNRKL----TGNNLHLYFNAGRDSHPDAL 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + E +I + + + +N FD + N Sbjct: 56 RVHGITTEFLKDKPRFE----EKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPL 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 + D L + + +Y L L G+++ N H Sbjct: 112 KQCVGG---VIDTLVMAKEMYPG--------------KRNSLDSLCDRLGVDNSNRTLHG 154 Query: 177 AKADVYATLALVWLIREKKP 196 A D + + + Sbjct: 155 ALLDAELLADVYINLTRGQD 174 >gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] Length = 219 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 34/204 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVD------RQWEKIESTEVFFCKPADDYLPDPEAV 58 + D ET G + A + + + + I S P+ Sbjct: 36 YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLIHCLE----VPPKIT 91 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TG++ +EA + F I +N FD ++ + + Sbjct: 92 ELTGLSTDDLKEAPPLEA-VLQDFKLFIQDH---IFVAHNADFDFHFISACCAQVLDSAL 147 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 N++ L++ R + LQ L G++ +H A Sbjct: 148 ------SNAKLCTLNLARKCIP--------------SPRHGLQFLNTFLGLDIPISHRAY 187 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 AD A+L + P+ Sbjct: 188 ADALASLRVFEHCLRVLPQEIYTA 211 >gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038] Length = 128 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 12/118 (10%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GI+ + A+ + F + +N FD + F D Sbjct: 66 HGISDEFLADKP-TFADITPEFLDFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIP 119 >gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2] gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2] gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] Length = 243 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 30/200 (15%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ ++ D ET G DR + V V+R+ + P+A+ Sbjct: 1 MSRQ-IVLDTETTGLSAIDGDRLIELGCVELVNRKL----TGNNLHLYFNAGRDSHPDAL 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + GIT + E +I + + + +N FD + N Sbjct: 56 RVHGITTEFLKDKPRFE----EKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPL 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 + D L + + +Y L L G+++ N H Sbjct: 112 KQCVGG---VLDTLVMAKEMYPG--------------KRNSLDSLCDRLGVDNSNRTLHG 154 Query: 177 AKADVYATLALVWLIREKKP 196 A D + + + Sbjct: 155 ALLDAELLADVYINLTRGQD 174 >gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] Length = 236 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 62/243 (25%), Gaps = 31/243 (12%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + R + V V + D DPEAV + Sbjct: 10 VVLDTETTGMNKDGTIYLGHRIIEIGCVEV-INRRLTGRH--YHVYLQPDREVDPEAVTV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + A+ + F ++ +N + + + N Sbjct: 67 HGITDEFLQDKPH-FADIADDFIDFIR--GADLVIHNAPFDVGFMDQEFRFLN------- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAK 178 ++ +P L L G +H H A Sbjct: 117 -----KKTQPTEEIATVTDTLVMAKKMFPG-----KRNNLDILCDRYGINTKHRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 D + L+ + K D + + + + + + A Sbjct: 167 LDAEILADVYLLMSGGQSKLNLSDDLDNMDSHTRQPRTSNNPLCIIRATAAENKAHIERL 226 Query: 238 ALI 240 LI Sbjct: 227 QLI 229 >gi|310823691|ref|YP_003956049.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|309396763|gb|ADO74222.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 982 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 32/193 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D +D + + ++ + A +TGI Sbjct: 12 VFLDLETTGLDPRVDEVIELGALFF-EHGREVRRIARMY---APSRPLPITIRRLTGIED 67 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + + + + +N F+ + G Sbjct: 68 AMLAGKPRFGSD-LDELREALTGW---TVVAHNAPFEKGFL--------------PKLLG 109 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R +LD ++ P+ +S L+ + G++ + H + D AT Sbjct: 110 PIRAPVLDSCELLHYLHPEL----------SSHSLEAMMRWAGLKPRSTHRVETDCEATY 159 Query: 186 ALVWLIREKKPKL 198 A++ E + Sbjct: 160 AVLSRALEGCIRE 172 >gi|261210981|ref|ZP_05925271.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260839956|gb|EEX66556.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 233 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 17/195 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D+ET G + + V ++ + ++V I GIT Sbjct: 44 LVALDFETTGLNPQQEAILSVGLVPFTTSRIALKE--ARYWLVKPTQPLAEQSVVIHGIT 101 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + + + I + + + + + + ++ Sbjct: 102 HSELSRAQAPD----EVLRELIGALRGKIAVVHFRHIEREFLQQATLQLWGEALE----- 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD--DGATSFKLQDLALANGIEHVNAHDAKADVY 182 L+D + + R S +L + G+ + H A D Sbjct: 153 ----LPLIDTLEVERHILQQQRSFWQRVTGRPLPSLRLGQSRMRYGLPSYSPHHALTDAI 208 Query: 183 ATLALVWLIREKKPK 197 AT L + Sbjct: 209 ATAELFQAQYTHHMQ 223 >gi|229529628|ref|ZP_04419018.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229333402|gb|EEN98888.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] Length = 236 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEEESIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIEREFLRQ------ISLNIWGEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQR-ITRQPLPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|313682951|ref|YP_004060689.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313155811|gb|ADR34489.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 204 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 20/188 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G + D V++ + +KI ++E F E++ I I P Sbjct: 32 VVFDTETTGLNTKKDEVLSIGAVKI--KGDKILTSESFELFLKPSREISVESIKIHHIRP 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E +++ +F N +IGY + + R + N Sbjct: 90 CDLENA-IEPVEGAKKFLEFV--GNRPLIGYY-----LEFDMAMMNRLIKPWIGVNLPNR 141 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L + G + + I + H+A D T Sbjct: 142 QIEVSGL----------YFDKKIELIPQGNIDLRFDTILRDLNIPRMGQHNALNDAIMTA 191 Query: 186 ALVWLIRE 193 + ++ Sbjct: 192 MVYIKLQH 199 >gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 293 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 64/220 (29%), Gaps = 19/220 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 H +I D ET G +DR Q + + D + E +E P EA+ I Sbjct: 1 MRHTIILDTETTGAG-EVDRICQLSYLVCDEKGEILELHNDLCTPPLP---ISFEAMAIH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITP+ + + P+ ++ N ++ Sbjct: 57 HITPEMLTGAPKCIETSAFNRLAELNTPDNLMVIQNAEFDLGMLAKEGMG---------- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D V+RA + R K Q L GIE AHDA DV Sbjct: 107 --LEMKLVDTFRVLRAWHPLDTPHGLQFKRYQWGLYHKEQPLIDKLGIEI-KAHDALGDV 163 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 L + E + + +K + + Sbjct: 164 IVLKHLYEKLLESHNAEG--MIELCSKPIILDYVPFGKHK 201 >gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 209 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 58/205 (28%), Gaps = 20/205 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G D DR + + I + F D D I GI Sbjct: 25 FVVLDTETTGFDYENDRILCIGALALQNG--VISVQDSFEIYLHQD-HYDKSTAQIHGIL 81 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ E E ++ F II ++ FD RN Sbjct: 82 KDLLVKRP-TELEALQQFLDFL---GDSIIIAHHTVFDVTMINKALERNGLPQ------- 130 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + + + L DLA I + H A D Y T Sbjct: 131 ------LTNKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGDAYIT 184 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 I +K + + KN Sbjct: 185 AIAFLKIVKKLREKKAVSLNQLFKN 209 >gi|323493392|ref|ZP_08098514.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323312215|gb|EGA65357.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 239 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 53/193 (27%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET G D V + I + + KP ++V I GIT Sbjct: 49 FLAMDFETTGLSSDDDDIITIGTVPFNLNRIYINQAQHWTVKPRKQL--AEDSVVIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L + S Q I+ + R + + + Sbjct: 107 HSDVLDAP----DLSGIYQQVLEQMAGKIMVVHYQRIEREFFDKALMARIKEGIE----- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + GI R S +L G+ H A D AT Sbjct: 158 -FPVVDTMQIETTLQQKLKGGILNKIRGRKPESVRLGASRARYGLPLYTPHHALTDAVAT 216 Query: 185 LALVWLIREKKPK 197 L+ + Sbjct: 217 AELLQAQIAHHYE 229 >gi|313768005|ref|YP_004061436.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599612|gb|ADQ91633.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1] Length = 432 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 61/438 (13%), Positives = 130/438 (29%), Gaps = 48/438 (10%) Query: 4 HFVIYDYETFGRD-------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50 +++ +D ET G R A V+ + ++ S P Sbjct: 2 NYIAWDTETTGLPMGYKKATPDNIHLFDKCRMLTLAFVKYSSKGRELSSYHGL-VYPDTF 60 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 +P E+ + GIT + A+ G + S NT I+ +N FD+ + Sbjct: 61 DVPQ-ESTNVHGITHEHAIHKGQPFGYVYAAFKEAVS--NTSILVAHNSSFDENCFFSEC 117 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 YR +D +D ++ + P KL + + Sbjct: 118 YRRGFD------TEPFKHVHFVDTLKMARSVLPGLFN----------HKLLTVYKHYFGK 161 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 +AHDA D A + L+R+ + K+ + + + + I M P + Sbjct: 162 EFDAHDALNDSRACGTIYPLLRDNEFKMKDVGIEKVT-LKASDIASIIGMNPYKKPKEVL 220 Query: 231 GASRSNTALIAPVAWHPR------YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284 + A + L D ++ ++S + ++ ++L Sbjct: 221 DNLWAKYAPETFEGKTKEQEALDTIQKCSASRLLFKDTETYKSMNSSDIERKFNAVSNQL 280 Query: 285 KGLVPVPIKEVHLNKCPILMPI-DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD---- 339 + ++ L + + H E +++ E+ T + + + Sbjct: 281 HMKSNLSKPDIKLVEEHFRKTLFTNHGTRHEETTALNYDDLKEDETFYKYEVCSIEGTTY 340 Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFAD---VDRQIMDRILRTAPEQLSTLNLPFSDRRL 396 R ++ + G F + + L ++D+R Sbjct: 341 RICGRIDRIRDDKTIIEIKNRTRGLFNSVRLYEEIQCQVYMEMLDLDKCELIEQYNDKRK 400 Query: 397 PELFFRYRARNFPHTLSE 414 L R + + L Sbjct: 401 TYLIHRDQMKWKSEILPA 418 >gi|170024544|ref|YP_001721049.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186895217|ref|YP_001872329.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] gi|169751078|gb|ACA68596.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186698243|gb|ACC88872.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 217 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++I D ET G + + + D + + EA I Sbjct: 41 LKRNYLILDTETTGLG-NDAEIIEISII--DCTGKIL-----LDTLVKPIKAIPAEATAI 92 Query: 61 TGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT R IH QF + N + N FD N Sbjct: 93 HGITNDIVADAPT-----WRDIHWQFMVLTNDRTLLIYNASFDSRLIFQTAAANNCPVPE 147 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178 + +D VM + + QW + + +L + A G+ H A Sbjct: 148 KKY-----IFDAECVMESYAKYYG---QWDQKRNKFKWQRLSNAAEQQGVAIDGTPHRAL 199 Query: 179 ADVYATLALVWLI 191 AD TL ++ + Sbjct: 200 ADCKTTLGIIRAM 212 >gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] Length = 244 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 62/218 (28%), Gaps = 29/218 (13%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + VF + A + GIT Sbjct: 6 IVLDTETTGLDADGGDRIIEIGCVEL-VDYVMTGR--VFHKYIDPERDISVAATRVHGIT 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE + + F + +N RFD + R Sbjct: 63 RESLIGMPK-FAEVADELLDFLQDS---ALVIHNARFDMRFLEVEIER-----LSNKRAI 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 N+ D L++ R + P L L I H A D Sbjct: 114 TNTIVDTLEMARKKFPGMPA--------------SLDALCKRFNISTQERKFHGALKDAT 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 + + E + + + + Q+ + D Sbjct: 160 LLARVYVELLEALQRRLVFSQEGDDSKQVSVIHDKAKR 197 >gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] Length = 933 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%) Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G DR QF + + + ++ + +TGI Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+A + + ++++I + I +NI FD + + Sbjct: 67 SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPF----- 117 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KLQD+ I+H N H A +D Sbjct: 118 -DGKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 T ++ I +K L + L + + V N LI Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220 >gi|116326190|ref|YP_803516.1| EXO III v-trex [Anticarsia gemmatalis nucleopolyhedrovirus] gi|46242295|gb|AAS83208.1| 3' repair exonuclease [Anticarsia gemmatalis nucleopolyhedrovirus] gi|112180928|gb|ABI13905.1| EXO III v-trex [Anticarsia gemmatalis nucleopolyhedrovirus] Length = 230 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 16/211 (7%) Query: 3 NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPE 56 +V D ET G + + + V R+ E + + + Sbjct: 5 KTYVFLDLETTGLPKLQNDQTQITELSLQCVTRE-ELLGAARVCNKLTLCFEPTVPISEQ 63 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A +T + + + + I F + P C++ YN FD N Sbjct: 64 ASALTQLNAENLRGQPLFDKRAVALIESFLALLSPPVCLVAYNGFAFDFPILYKHLKDNG 123 Query: 115 Y-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 + D+Y + + + W S+KL DL + Sbjct: 124 FASAVQCADAYHALFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLVDLYKRH 183 Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198 ++ H A+ D + LV + Sbjct: 184 VGGNLKGHRAEDDCAMMMQLVQKHAAEFVNW 214 >gi|156368138|ref|XP_001627553.1| predicted protein [Nematostella vectensis] gi|156214466|gb|EDO35453.1| predicted protein [Nematostella vectensis] Length = 275 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 6/110 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFITG 62 + + D ET G DR Q A V+V + + + + + P D + Sbjct: 26 TYCVLDVETTGLSKLNDRIVQIACVKVKPTGD--KESWMSYINPCMDREKQLAGGYKVHH 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 ++P L+ +E + +F + N +D F R Sbjct: 84 LSPDMLLKKPK-FSEIVESLWRFL--CGAEYLVAYNCLYDWDMLCQEFRR 130 >gi|126665477|ref|ZP_01736459.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126630105|gb|EBA00721.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 245 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 18/193 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET G V + ++ + + KP +V I GIT Sbjct: 56 VAIDFETTGLSATEHSIISVGLVPFTLEGIQLSAARHWLVKPK--LALHQTSVTIHGITH 113 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + + + R F D Sbjct: 114 ADLEQAP----DLVDILPELLECLAGRLPVVHYRDIE---------RPFLDVALRHRLQE 160 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++ LLD M PD + S +L D L G+ H AH+A D Sbjct: 161 GIQFPLLDTMAIEAHLHPDRRPTFWQTWRGKKPLSIRLSDSRLRYGLPHYAAHNALMDAI 220 Query: 183 ATLALVWLIREKK 195 AT L+ Sbjct: 221 ATAELLQAQIAHH 233 >gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans CJ2] gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans CJ2] Length = 240 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 52/198 (26%), Gaps = 29/198 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G DR + V V R+ + +A+ + GI Sbjct: 4 IVLDTETTGLSAENGDRIIEIGCVELVRRKL----TGNNKHFYLNPGRNSHEDALKVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + FS + + I +N FD + + Sbjct: 60 SNEFLKDKPK----FSAVVDELLDYLQGAEIIIHNAPFDVSFLNKELEIIGREP------ 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 +M + + + G + L L +++ H A D Sbjct: 110 ----------LMHCVAKVTDSLMMAKEMFPGKRN-SLNALCDRLEVDNSGRTLHGALLDA 158 Query: 182 YATLALVWLIREKKPKLF 199 + + + L Sbjct: 159 ELLADVYINLTRGQNSLM 176 >gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus LMG 18311] Length = 557 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 29/204 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 TN + I D E Q V + + I+ D V +T Sbjct: 17 TNKYAIVDLEATSASSTAC-IIQVGIV-IMQNGRVIDEFAS---DVNPHQKLDNHIVHLT 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q+ + +E +R I + CI +N++FD + ++ Sbjct: 72 GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L L+ ++ AH A D Sbjct: 123 --LRTPRVDTVELAQVFYPTLEQ-------------YNLSYLSRVLNLDLAQAHTAIEDA 167 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 AT L+ + +K L D Sbjct: 168 RATGKLLLHLMDKIASLPRQTIDM 191 >gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] Length = 443 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 68/230 (29%), Gaps = 24/230 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63 F D ET + Q VR ++ +S + C P + V I GI Sbjct: 100 FTAVDVET--ANDNWGSICQIGAVRFRE-GQETDS-RSWLCTPPPGIEHFADINVSIHGI 155 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E S+ + F ++ +N +FD R+ + Sbjct: 156 TADDVKGAPA-FVEVSKELFDFL---GGDVLVAHNAQFDSTALRSALLTAGAE------- 204 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + ++ + KL +A + HDA D A Sbjct: 205 --------VPTVPLACSLALSRDASKAKVISVRNHKLPTVAAHLSAPDFSHHDATEDARA 256 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 ++ + E+ + + +D + + P++ + Sbjct: 257 AGEIIARLAERFGHTGSIRDLFTAREFTLGRLDSEAILPVLRAHTAPTSG 306 >gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI18] gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID1] gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID24-1] gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-92-679] gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] Length = 244 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T Q AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRVGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|88808413|ref|ZP_01123923.1| Exonuclease [Synechococcus sp. WH 7805] gi|88787401|gb|EAR18558.1| Exonuclease [Synechococcus sp. WH 7805] Length = 272 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 62/232 (26%), Gaps = 29/232 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +I D ET G D D+ + + ++ + C D P A I Sbjct: 41 PSRLLIVDTETTGLDADRDQCLEVGAILFSVPHRQVLAQMS--CLLPVDSNP---AESIN 95 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P + R + + + + +N FD + Sbjct: 96 RI-PAEVSRVEQPWGDGLAWFERMMMSAD--YLVAHNAAFDRQWFGRGA----------- 141 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + + + I+WP + + DLALA GI +AH A D Sbjct: 142 ----------LPEAKRPWLCTLEDIRWPEARNLKARPSVIDLALAYGIPVWSAHRALTDC 191 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + + + + L R Sbjct: 192 IYLAEVFQRCDDLEELITHALEPRRLVRAQVSYDQRHLAREAGFRWNEPVKG 243 >gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] Length = 219 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 34/204 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVD------RQWEKIESTEVFFCKPADDYLPDPEAV 58 + D ET G + A + + + + I S P+ Sbjct: 36 YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLIHCLE----VPPKIT 91 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TG++ +EA + F I +N FD ++ + + Sbjct: 92 ELTGLSTDDLKEAPPLEA-VLQDFKLFIQDH---IFVAHNADFDFHFISACCVQVLDSAL 147 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 N++ L++ R + LQ L G++ +H A Sbjct: 148 ------SNAKLCTLNLARKCIP--------------SPRHGLQFLNTFLGLDIPISHRAY 187 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 AD A+L + P+ Sbjct: 188 ADALASLRVFEHCLRVLPQEIYTA 211 >gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7] gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7] Length = 443 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 29/191 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M D ET + + + + VD + + D + + Sbjct: 1 MEQSITFVDVET--PNYQNNSISSIGVINVDGDGVVT----TKYFLVDPEAHFDRFNIEL 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP+ E I +F+ ++ +N FD R + Sbjct: 55 TGITPEMVADQP-NFKEVWSEIEPYFTNS---LVVAHNAVFDLGVISACLQRYDLPIFPI 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + R A + S+KL DL+ + N H+A AD Sbjct: 111 FYT---------CTYRISRALKI----------PSNSYKLNDLSSYYHVTLDNHHNALAD 151 Query: 181 VYATLALVWLI 191 A + + + + Sbjct: 152 SKACMEIFYYL 162 >gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402] gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 850 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 27/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D ET G ++ D Q V + + IE+ + F + + Sbjct: 1 MNRKYAVVDIETTGNNLDSDEIIQVGIAIV-QNKKIIETYDTFIACNNE---IPAFIQSL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I + + + I + + C+ +N++FD + + F + Sbjct: 57 TKIDAFDLVDAP-NFSHVASHIIKLL---DGCVFVAHNVQFDLRFLQKYFSEAGHKFQPR 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +D + +Y ++L+ +A GIE +AH A D Sbjct: 113 Y------IIDTVDWFKIVY-------------PSLERYQLKSIADDLGIELSSAHRAIDD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 AT + +K Sbjct: 154 AVATAEVFIESIKKVTTFPSDTIKM 178 >gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51] Length = 323 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 163 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296 >gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8] gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8] Length = 227 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 33/203 (16%) Query: 6 VIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 + D ET G R + A V E + F D DP A + Sbjct: 4 IFLDTETTGLYHAQGHRVIEIAAV------EVVNRRLTKHHFHYYLNPDRDIDPGAQEVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + A+ + + F + + +N FD + Sbjct: 58 GISLEFLQDKPR-FADIANELITFIADAE---LIMHNAPFDVGFLNCELGLIGQK----- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + I A D ++ L L GI++ H A Sbjct: 109 ------------KVEEISAKVTDTLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALL 156 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D + + + L L Sbjct: 157 DAELLADVYMAMTRGQDSLMIAL 179 >gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 929 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%) Query: 5 FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D+ QF+ V + + E +TGI Sbjct: 7 YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPVEVKKLTGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I+ +N+ FD + + R Y Sbjct: 63 KDKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D ++ P S++L D++ + H++ H A +D A Sbjct: 115 -----LPMMDTVQLTQIIYPTL----------VSYRLIDISKYLQLSHIHPHKADSDTKA 159 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 T L+ ++++ L K + V+++ Sbjct: 160 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLTKK 205 >gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] Length = 242 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 57/224 (25%), Gaps = 42/224 (18%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + DR + + + T + P A I GI Sbjct: 4 IVLDTETTGFEPSEGDRIVEIGAIEL-HNHMPTGRTYHQYINPKRSM--PAGAFGIHGIG 60 Query: 65 PQK-------------ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 P V A+ ++ F + +N FD + Sbjct: 61 PDLLDPPQTPTAGQVILRDKPV-FADIAQAFVDFIGDAK---LVIHNAAFDMKFLNAELG 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 D L + R + SP L L GI++ Sbjct: 117 WVNRPLLPMDQS-----LDTLGIARKKFPGSPA--------------SLDALCRRFGIDN 157 Query: 172 VNA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 N H A D + + + +K++ Sbjct: 158 SNRTLHGALLDSEILAEVYLELIGGRQPDLVMGGQTSSKSKTAA 201 >gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK1087] Length = 814 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L I++K L + L + Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALVE 178 >gi|153830906|ref|ZP_01983573.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|229515666|ref|ZP_04405125.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|148873606|gb|EDL71741.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|229347435|gb|EEO12395.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] Length = 236 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V Q + + + E++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEESIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + N I+ + + + R W Sbjct: 104 THSELQYAQAPE----QVLKELLEALNGKIVVVHFRHIEREFLRQ------ISLNIWGEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 246 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 32/203 (15%) Query: 3 NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D ET G + + V + + F D + EA Sbjct: 10 QRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEI-INRKLTG--NSFHVYIKPDRTIEVEA 66 Query: 58 VFITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + GIT + + + +H +F + +N FD + +R Sbjct: 67 IGVHGITDEFLIGKP-----VYKEVHDEFLEFIKGAELVAHNAPFDVGFMDYE-FRKLNP 120 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 + + ++ D L + + I+ L L GI+ H Sbjct: 121 NIGKT-EDFCKVTDTLAMAKKIFPG--------------KRNNLDILCSRYGIDNSHRTL 165 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 166 HGALLDAEILADVYLLMTGGQTS 188 >gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160] Length = 814 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 64/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTGSGA-KIIQIGIVLI-ENGSITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCDLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1] gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1] Length = 272 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 38/229 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFIT 61 + + D ET G + + V V + E ++ E F C +Y+ IT Sbjct: 72 QRYCVIDIETNGSKPGTSQVIEIGAVMV-EKGEIVDRLETFVECAFLPEYI-----TKIT 125 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P ++ QF + +N FD + F R Sbjct: 126 GIEPIDLKDAP-TRRAALTQLRQFM---GDAVFVAHNANFDYSFLTASFERFGLGGI--- 178 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 GN + +D+ + + + + L L GIE H A +D Sbjct: 179 ---GNPKLCTIDLAKRTF--------------ESERYGLAYLIDFLGIETATHHRAYSDA 221 Query: 182 YATLALVWLIREKKPKLF-------EYLYDYRNKNQLRKLIDIQNMTPL 223 ++ E P+ ++ R + + P+ Sbjct: 222 LCAEKVMEKSFENLPEYVKTTDDLLQFSISSRKQRTQKNKDKATTARPV 270 >gi|126667590|ref|ZP_01738560.1| exonuclease [Marinobacter sp. ELB17] gi|126628016|gb|EAZ98643.1| exonuclease [Marinobacter sp. ELB17] Length = 232 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 25/207 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFI 60 T+ ++ D ET G + A D+ V ++ + + ++ +P D + V I Sbjct: 35 TSRLIVLDLETTGLNPAKDQMIAIGAVAINNNAMPLDDQFDLILRRPELDIR---KTVLI 91 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI P+ E + N I + FD + Sbjct: 92 HGIGPEALTAGHETE----DALLHLLDWMNGDPILAYHSAFDQKFLEKTLRAELGYGENH 147 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W D+ ++M A + + + L + A G++ H A AD Sbjct: 148 IW------LDVAELMPAFFPTANKQRK-----------GLDNWADTFGLQASARHHAAAD 190 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207 T L + K + + + Sbjct: 191 AMVTAELTLIALNKAAQQGIHTLAQLS 217 >gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] Length = 937 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%) Query: 5 FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D+ QF+ V + + E +TGI Sbjct: 15 YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPAEVKKLTGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I+ +N+ FD + + R Y Sbjct: 71 KDKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D ++ P S++L D++ + H++ H A +D A Sbjct: 123 -----LPMMDTVQLTQIIYPTL----------VSYRLIDVSKYLQLSHIHPHKADSDTKA 167 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 T L+ ++++ L K + V+++ Sbjct: 168 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLNKK 213 >gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99] gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99] Length = 323 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 109 FSFVDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 163 TYEDTLNAPSAH-EALQELRIFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296 >gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] Length = 247 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 28/197 (14%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 ++ D ET G + R + V E I F DP A+ + Sbjct: 4 IVLDTETTGLETSDGHRVIEIGCV------ELINRRLSGRHFHQYINPQREVDPGAMEVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + + + +F I +N FD + Sbjct: 58 GISNEFLQDKPL-FSAIADEFLEFIKGAELII---HNAPFDIGFLDYEL----------- 102 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 R + + ++ + + G + L L +++ + H A Sbjct: 103 SLESERRAAPMPTVESLCGVIDTLVMARRKHPGQRN-TLDALCTRYDVDNSSRDLHGALL 161 Query: 180 DVYATLALVWLIREKKP 196 D + + + Sbjct: 162 DSEILADVYLAMTGGQT 178 >gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA6140] Length = 244 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T Q AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRVGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAIAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK36] gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit, putative [Streptococcus sanguinis SK36] Length = 814 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEDLDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II '5-way CG'] Length = 265 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 61/199 (30%), Gaps = 28/199 (14%) Query: 4 HFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 D ET G + R + + + D +PD I G Sbjct: 2 KITFLDVETTGLLRDSRARIIELGF-STWENGKLLRKNSTLIKSV--DVVPD-NISKING 57 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E + + I + F I+ +N+ FD Sbjct: 58 ITTEMLKDAPGFE-DVWKSIKEDFQ---GSILVAHNLAFDVGMVNREL------ILANRI 107 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 GN D L + R + +S++L ++A GI + + H A D+ Sbjct: 108 PLGNMGIDTLPLSRKM-------------LPELSSYRLGEIAKHMGILNESPHRAMGDLE 154 Query: 183 ATLALVWLIREKKPKLFEY 201 ++ + E P F+ Sbjct: 155 TLEKILSNLLESLPGTFDE 173 >gi|152992740|ref|YP_001358461.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1] gi|151424601|dbj|BAF72104.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1] Length = 206 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 50/188 (26%), Gaps = 20/188 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G D D V++ + + K E++ I I Sbjct: 32 VVFDCETTGLDPKKDGIVSIGAVKIKENRILTDEAMHIYVKQEKQ--ISHESITIHQIRH 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 V E F + GY + + + Y + N Sbjct: 90 CDLEDA-VPIEEAIEEFLYFI--GGRTLAGYY-----LEFDVAMINKYIKPMYGITLPNK 141 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + + G + + + + + AHDA D T Sbjct: 142 QEEVSAI----------YYDKKISTIPQGNIDLRFETIIEDLSLPKLQAHDALNDAVMTA 191 Query: 186 ALVWLIRE 193 + ++ Sbjct: 192 MIYLKLKH 199 >gi|87302291|ref|ZP_01085116.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 5701] gi|87283216|gb|EAQ75172.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 5701] Length = 297 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 58/234 (24%), Gaps = 33/234 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVF 59 +I D ET G D D + V + S C+ A Sbjct: 64 PQRLLILDTETTGLDPERDHCIEVGAVLFHVSSRAVLSQLSLLLPCQ-------SNTAEA 116 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GI R + + + +I +N FD + Sbjct: 117 INGI-DAAVSRLEQPWQAGLLYFQELVASAD--VIVAHNAAFDRAWFGRG---------- 163 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L + + S D ++WPS + ++DLALA GI AH A Sbjct: 164 -----------PLPAIDKPWLCSMDDLRWPSERRLKATPSVRDLALAYGIPVWAAHRALT 212 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 D + + L R A Sbjct: 213 DCIYLAQVFERCEDLNSLFLAGLEPRRLYRAELPYDQRHRAREAGFRWNDPVAK 266 >gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 241 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 53/190 (27%), Gaps = 18/190 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V A + G+T + Sbjct: 12 FDTETTGVDVETDRIVSAAVVVQDAPG---ARPRVSRWLVNPGVPVPAGATAVHGLTDEH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+G + I + ++ N FD R+ Sbjct: 69 LQRNGRWPSPVMDEIARELGEQATAGRPLVVMNAP-FDLTLLDRELRRH----------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S D + P + L DL + AHDA AD A Sbjct: 117 RASCLDHWFESAPLRVLDPRVLDKHLDRYRKGRRTLTDLCAHYDVALEGAHDAAADALAA 176 Query: 185 LALVWLIREK 194 + +V + + Sbjct: 177 MEVVRAVGRR 186 >gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059] Length = 267 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L I++K L + L + Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALVE 178 >gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22] gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22] Length = 239 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 42/144 (29%), Gaps = 7/144 (4%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R V R E+I E EAV + GIT + Sbjct: 11 FDLETTGTDPREARIVT-GAVIEVRDGERIGHREWLA---DPGVEIPEEAVAVHGITNAR 66 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR-WSWDN 124 A+ +G + I + N FD R+ S R + Sbjct: 67 AVAEGRPADRVADAIADVLVSYWRTGVPVVAYNAAFDLSLLSAELRRHALPSLRDRLGTD 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQW 148 D + R++ + Sbjct: 127 PAPVIDPYTIDRSVDRYRRGKRNL 150 >gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 236 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 27/204 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 VI D ET G + A DR + + + + F + D A + G++ Sbjct: 4 VILDTETTGLNPATGDRIIEIGCIEM-VGRRLTDR--TFHYYINPERDIDAGAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ + Q + I +N FD + N F + Sbjct: 61 REFLSDKPI----FANIVEQLIEFVDGAEILIHNAAFDLGFLDNEFALLKRPPF------ 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182 R + + D + + L L +H H A D Sbjct: 111 -----------RNLASKITDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQ 159 Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206 + + + L L DY Sbjct: 160 LLAEVYVAMTRGQEDLSIDLIDYT 183 >gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18] gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18] Length = 314 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 47/186 (25%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITG 62 + D ET G + D+ + V D +I + + PE ITG Sbjct: 57 ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDPGFPIPPEVREITG 116 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + F + +I +N + Sbjct: 117 ISDEMVRGQ-----AFDDAFVDLLAGKADLVIAHNAAFDRKFVETRFPAFKKLPW----- 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + Q + +S L L G +NAH A D Sbjct: 167 -------------------ACTVCQIDWSAERLSSRTLDFLLFKTGSLTINAHRALDDAE 207 Query: 183 ATLALV 188 L L+ Sbjct: 208 GVLGLL 213 >gi|217978759|ref|YP_002362906.1| DNA polymerase III subunit epsilon [Methylocella silvestris BL2] gi|217504135|gb|ACK51544.1| Exonuclease RNase T and DNA polymerase III [Methylocella silvestris BL2] Length = 222 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 19/192 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G D D A V++ +I ++E F + + EA+ + + Sbjct: 33 VAFDCETTGLDPRRDDIITIAAVKIR--GNRILTSERFEAVIRPEARMNAEAIKVHRLRE 90 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G + + F +IGY + G Sbjct: 91 ADV-EAGKRIEKIMPQFLHFI--GGRPLIGYYLEFDVRMID--------------KYLLG 133 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L + + + + + + + ++ HDA D T Sbjct: 134 LLGIELPNPLIEVSNLYYERKYGDAPPGATIDLSFAAILKDLDLPMLDQHDAFNDALMTA 193 Query: 186 ALVWLIREKKPK 197 + +R+ K + Sbjct: 194 MIYIKLRDMKER 205 >gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72] Length = 814 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCGLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium castaneum] gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum] Length = 319 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 9/119 (7%) Query: 3 NHFVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP----ADDYLPDP 55 FV D ET G + R + V V ++ K + P Sbjct: 32 KTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMKMISP 91 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112 EA +TG++ ++ I ++ C++ +N RFD R + Sbjct: 92 EATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAEVEK 150 >gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] Length = 443 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 29/191 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M D ET + + + + VD + + D + + Sbjct: 1 MEQSITFVDVET--PNYQNNSISSIGVINVDGDGVVT----TKYFLVDPEAHFDRFNIEL 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP+ E I +F+ ++ +N FD R + Sbjct: 55 TGITPEMVADQP-NFKEVWSEIEPYFTNS---LVVAHNAVFDLSVISACLQRYDLPIFPI 110 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + R A + S+KL DL+ + N H+A AD Sbjct: 111 FYT---------CTYRISRALKI----------PSNSYKLNDLSSYYHVTLDNHHNALAD 151 Query: 181 VYATLALVWLI 191 A + + + + Sbjct: 152 SKACMEIFYYL 162 >gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1] gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1] Length = 323 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 163 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296 >gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 172 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 30/184 (16%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R ++ L L I++ H A Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168 Query: 179 ADVY 182 D Sbjct: 169 LDAQ 172 >gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 203 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 51/204 (25%), Gaps = 26/204 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +V+ D ET G R A+ V + + F A + Sbjct: 1 MQTRYVVLDTETTGLSPRYHRLAEVGCVEI-ACGRITGNF--FHSYINPRQRMTRGAQAV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + + ++R+ F + +N+ FD + + Sbjct: 58 HRLRDEFLAEQP-TFRAIAQRLLFFLCRS---TLVGHNLSFDLNFLDAGLATAGF----- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178 + R + + ++ F L G+ + H A Sbjct: 109 -----------MPAARYCHGVIDTMLHL-AQRGRRRRFSLDACCDRLGVRRGDRARHGAL 156 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D + + P + + Sbjct: 157 EDAVLLAEAFVVAKRTLPPIGYHC 180 >gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 186 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 14/195 (7%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V D ET G L R + V V + ++F D D A + I Sbjct: 3 YVCLDTETTGSKYYLGHRIIELGCVEVICGQKSGRELHMYF---NPDRRSDFGAFRVHKI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + L A+ I F + +N FD + F + Sbjct: 60 SDEFLLDKPR-FADCVDEIIDFLY---GSTLVIHNAPFDMGFLNYEFKISGQP------K 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D++D + P + R +K + N H N H A D Sbjct: 110 LNEFVVDVIDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPALHRNPHGALIDARM 169 Query: 184 TLALVWLIREKKPKL 198 L + + ++ Sbjct: 170 LADLFIRLNMGQEEI 184 >gi|298498457|ref|ZP_07008264.1| gp39 [Vibrio cholerae MAK 757] gi|297542790|gb|EFH78840.1| gp39 [Vibrio cholerae MAK 757] Length = 188 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 22/193 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +I D ET G D R + + + D Q ++ PE I G Sbjct: 10 DNAIILDTETTGLDSD-ARILEVSII--DAQTGIK----LYSSLVNPLCSISPEVTAIHG 62 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + I + S ++ I YN + +F ++ Sbjct: 63 ITNDMVIDMP-TFDKVWNDIKGYLS--DSVIYVYN-----LDFDYRMFAQSLRPFGYPVA 114 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVN--AHDAKA 179 + + + VMR F +D F +L + ++ + AH A A Sbjct: 115 NLVHFFGGGVCVMRWYANFYGSLC----GNDVTPRFQRLTNACYQQDVDTSDLTAHRALA 170 Query: 180 DVYATLALVWLIR 192 D T L+ + Sbjct: 171 DCEMTRRLINAVN 183 >gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Pelagibaca bermudensis HTCC2601] gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Roseovarius sp. HTCC2601] Length = 229 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + + + E + + EA + G+ Sbjct: 4 IVLDTETTGFEPETGDRIVEIGAV---ELYNHVPTGETYHQYINPERSMPQEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + F++ + +F + +N FD + + Sbjct: 61 DDFLRDKPL----FAQIVDEFLEFIGDSKLVIHNATFDVKFLNAELGWSKRPLLP----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + SP L L GI++ + H A D Sbjct: 112 KDCAVDTLAIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKL 198 + + K Sbjct: 158 ILADVYLELIGGKQPD 173 >gi|254383630|ref|ZP_04998980.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194342525|gb|EDX23491.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 241 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 44/166 (26%), Gaps = 18/166 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A + + P A + G+T Sbjct: 12 FDTETTGVDVEQDRIVSAALIVQECAG---GRVRSTRWLVNPGIPVPPGATEVHGLTDDH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+G A I + ++ N FD R+ S DN Sbjct: 69 LQRNGRWPAPVVEEIARALGEQLVAGRPVVVMNAP-FDLTLLDRELRRHRASSLARYLDN 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 R + P + L DL GIE Sbjct: 128 -----------RPLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGIE 162 >gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335] gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335] Length = 273 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 60/216 (27%), Gaps = 23/216 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G R + + V + +E E + ITGIT Sbjct: 31 LTVVDVETTGALGHNARVIEVS-VLHASLADGLEHQESYL--INPQVKIPEYITRITGIT 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ E E + + +N+ FD + R + R Y Sbjct: 88 PEMVYSSPPPE-EIWPKCQPLLE--GDRVFTAHNLDFDYSFLRTEYKRLGIRFY------ 138 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + D S L +L + +H A+AD A Sbjct: 139 -KPPLQKLCTVILSRMLLADL----------PSRSLPNLIKHFNFDIDTSHRAEADTKAC 187 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L + + + R Q +L D + Sbjct: 188 WLLAKTLLTQIQNEDDETLLKRFGQQWIRLQDAAKI 223 >gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] Length = 323 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 61/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L V E + + F + +N FD + F + Sbjct: 163 TYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 296 >gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 240 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 45/165 (27%), Gaps = 16/165 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R V + E + E +AV + GIT ++ Sbjct: 11 FDLETTGTDPREARIVT-GAVIEVKGQEPVGRREWLA---DPGVEIPADAVAVHGITNER 66 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G + + Q + N FD R S Sbjct: 67 AAAEGGPPDRVAESLAQTLVGYWRTGVPVVAYNATFDLTLLSAELRRYGLPSL------- 119 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 R D D I ++ D L+ + G+ Sbjct: 120 RERLDGRDPAPVIDPYTIDRW---VDRYRRGKRNLEAVCTEYGVP 161 >gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695] gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori 26695] Length = 350 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + L E + + F + +N FD + F + Sbjct: 163 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 296 >gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium resistens DSM 45100] Length = 1144 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 28/193 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G DR + V +D+ E T +P D F+ Sbjct: 4 PQRYAVIDLETTGFSK-TDRVIEIGVVLLDQAGNV-ERTWETIVQPNRDIPNS----FVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 +TP + + F + + + I +N FD + + F R + Sbjct: 58 KLTPSHLVHAPL----FEEIAEELAEILHGRTIIAHNAPFDIRFLTSEFERIGVALPAY- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G D L + R + + L+ + GI + H A AD Sbjct: 113 ---GAWVHDTLPLCRQCFPGTNG--------------SLEKVTKLLGITNDRPHAALADA 155 Query: 182 YATLALVWLIREK 194 AT + +R Sbjct: 156 LATAEIYRHLRND 168 >gi|251782080|ref|YP_002996382.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390709|dbj|BAH81168.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 820 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 100/336 (29%), Gaps = 38/336 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT + + D E A Q V ++ + E +E+ + + Sbjct: 5 MTRKYAVVDLEATNAG-ATAAIIQVGIVIIEGK-EVVETYQT---DINPHEPLSDHIKAL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + ++ ++ I++ S C+ +N++FD + Y+ Sbjct: 60 TGITDAQLAQAPE-FSQVAKTIYELISD---CVFVAHNVKFDANLLAEALFFEGYELLT- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R D +++ + Y + L L+ G+E AH A AD Sbjct: 115 ------PRVDTVELAQIFY-------------PSLEKYTLGHLSAELGLELEEAHTAIAD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT AL + +K L + + L + + R+ L Sbjct: 156 ARATAALFIKLLQKIESLPKECLESLLPYADSLLFETAMVIEQGFNQAKPYNPRTYVHLG 215 Query: 241 APVAWHPRYK---------DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291 + + I L G + QL + + Sbjct: 216 KMLLPKHLKRQSSPYQLSKQFAINMALLGLEERSKQASFAQLIEADYHQRQASFIEAQTG 275 Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327 I + + P+L D + I + + N Sbjct: 276 IGKTYGYLLPLLAQEDQSQIIVSVPTKILQDQLMAN 311 >gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118] gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius UCC118] Length = 929 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%) Query: 5 FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D+ QF+ V + + E +TGI Sbjct: 7 YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPVEVKKLTGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I+ +N+ FD + + R Y Sbjct: 63 KDKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D ++ P S++L D++ + H++ H A +D A Sbjct: 115 -----LPMMDTVQLTQIIYPTL----------VSYRLIDISKYLQLSHIHPHKADSDTKA 159 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 T L+ ++++ L K + V+++ Sbjct: 160 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLTKK 205 >gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis URRWXCal2] Length = 377 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 31/209 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G D+ + V+ + + + +TGI Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGI 185 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ E + + N II +N FD + Sbjct: 186 TDEMVQGK-AIDQEAVTQFLE-----NVDIIIAHNASFDRPF------------------ 221 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + + A+ + + S KL+ LA + + Sbjct: 222 -----FDKMFLHLPPKAWGCSRADIDWKAEKIESHKLEYLAYKYNFFYEGHRAVTDCLAG 276 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212 L + K + + L NK + + Sbjct: 277 LHLLAQTLPIAKQPVLKQLLVNCNKTRFK 305 >gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115] Length = 814 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q V + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L I++K L + L + Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALVE 178 >gi|239948068|ref|ZP_04699821.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of Ixodes scapularis] gi|239922344|gb|EER22368.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of Ixodes scapularis] Length = 251 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 56/208 (26%), Gaps = 31/208 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D ET G D+ + V+ + E F P +TGIT Sbjct: 2 FLDTETTGLSYVTDKILELGMVKFEYTNDGRIYNILEEFNQYQDPKEPIAPHITELTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + E + N II +N FD + + Sbjct: 62 DEMVRDQNINKEEVINFLQ------NVSIIIAHNAGFDRPFFDK------LFPDLTTKIW 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G +R D + + S KL+ LA + + Sbjct: 110 GCARLD-----------------IDWKYEKIESQKLEYLAYKYNFFYEGHRAVIDCLAGL 152 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR 212 L + K + + L +K + + Sbjct: 153 HLLSQYLPVSKELVLKQLLMNYHKTRFK 180 >gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] Length = 927 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 28/205 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F + D ET G QF + + + +++ + V + Sbjct: 7 KDTFAVVDLETTGTQREKGHHIIQFGCAII-KNMKVVKTYS---FMINPHHEIPQSVVNL 62 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + + ++ +I + + +N+ FD + ++ Y++ Sbjct: 63 TGIHNEDVQGKD-DFSVYAPKIIEILK---GTVFVAHNVDFDLPFLNYELVQHGYEAL-- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N D +++ + + S+KL DL I+H+N H A +D Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLKIKHLNPHKADSD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 Y T L+ I K L + + Sbjct: 160 AYGTAVLLIKIIHKLESLPQATLNT 184 >gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] Length = 239 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 29/184 (15%) Query: 8 YDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G + DR + GV W I + + + EA + G++ + Sbjct: 6 FDTETTGLNPRGGDRLVEIGGV---ELWNHIPTGKSYHVYINPQRDMPEEAFRVHGLSEE 62 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + + F + +N FD + R+ Sbjct: 63 FLSDK-QLFDQVADEFLDFV---GDATLVIHNAAFDMGFINMELERSGRRIISNDQ---- 114 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184 D LD+ R + P+ L L GI++ H A D Sbjct: 115 -VLDTLDLARRKHPTGPN--------------SLDALCSRYGIDNSKRVKHGALLDAEIL 159 Query: 185 LALV 188 + Sbjct: 160 AEVY 163 >gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20] gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae Rd KW20] Length = 256 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNXHIYIKPDRPXDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + I +N FD + F + + Sbjct: 65 HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186 >gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] Length = 256 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 31/203 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + V + + F D DP+A+ + Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRSVDPDAIKV 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + E ++ + + I +N FD + F + + Sbjct: 65 HGITDEMLADKPE-FKEIAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLDLNVKT- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D+ D L + R +Y L L GI++ H A Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163 Query: 179 ADVYATLALVWLIREKKPKLFEY 201 D + ++ + LF+ Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186 >gi|46578859|ref|YP_009667.1| exonulcease [Desulfovibrio vulgaris str. Hildenborough] gi|46448271|gb|AAS94926.1| exonulcease, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 244 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 16/191 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D E G D AGV + + F K P+ +A+ + G+ Sbjct: 40 TFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGR--CFEAKMRPHLPPEEDAIAVHGL 97 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + AE F ++ G++ + R + D Sbjct: 98 LPDETATHDDP-AESLAAFRTF--CGDSVPAGWHVGLDAAFLDAAAQRHGVRPWPRRTLD 154 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +R ++ + + L +A I+ +AHDA D + Sbjct: 155 -----------VRGLHLALRHRLPARAAALATKDADLYAVARVFDIDVADAHDATGDAWL 203 Query: 184 TLALVWLIREK 194 T ++ + Sbjct: 204 TALVLQRLLVH 214 >gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 240 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V +I + VF + EA + G++ Sbjct: 4 IVLDTETTGLEAYGGDRLVEIGCV---EMVNRILTGTVFHVYINPERDMPVEAFNVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + F + + +N FD + R + Sbjct: 61 AEFLSDKPK-FKDVADEFLNFIAE---DTLVIHNAAFDIGFLNAELERLGRPTIAR---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + + +L DL GI+ H A D Sbjct: 113 -DRVVDTLALARRKHPGGGN--------------RLDDLMNRYGIDSSRRVKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|311232722|gb|ADP85576.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris RCH1] Length = 251 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 16/191 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D E G D AGV + + F K P+ +A+ + G+ Sbjct: 47 TFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGR--CFEAKMRPHLPPEEDAIAVHGL 104 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + AE F ++ G++ + R + D Sbjct: 105 LPDETATHDDP-AESLAAFRTF--CGDSVPAGWHVGLDAAFLDAAAQRHGVRPWPRRTLD 161 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +R ++ + + L +A I+ +AHDA D + Sbjct: 162 -----------VRGLHLALRHRLPARAAALATKDADLYAVARVFDIDVADAHDATGDAWL 210 Query: 184 TLALVWLIREK 194 T ++ + Sbjct: 211 TALVLQRLLVH 221 >gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 286 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 31/205 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D ET G+ + Q ++V + + + + +TGI+ Sbjct: 33 YTVFDLETTGK-----KIIQIGALKVRDD-QTVAKFSTY---VNPLEKINDYVSHLTGIS 83 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +++ E F + ++G+N + FD + + Sbjct: 84 NYQTDAAPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNG-----------YPV 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N + D L + + D ++ +L L GI N+H A +D Sbjct: 130 ANPKLDTL-------LLANSYKKRGLFADPISNVRLSTLKEYYGINI-NSHIAISDCITN 181 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 + +R+ + D+ K Sbjct: 182 NIVYQKLRDGDLAKATEIIDFTPKQ 206 >gi|148242440|ref|YP_001227597.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307] gi|147850750|emb|CAK28244.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307] Length = 264 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +I D ET G D +D+ + + + + F + A + G Sbjct: 38 DQLLILDTETTGLDPEVDQVLEVGAILFSVPQRAVLAQLSFLLPVEAN-----AAEPLNG 92 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I A + + + QF S + +N FD + + Sbjct: 93 IRAG-ATQAPQPWQPSLQLLQQFASCAQ--LAVAHNAAFDRQWFGHGA------------ 137 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + + + I WP+ ++DLALA G+ AH A D Sbjct: 138 ---------LPDLPLPWLCTMEDIHWPADRLLRPRPSVRDLALAYGVPVWAAHRALTDCI 188 Query: 183 ATLALVWLIRE 193 + + Sbjct: 189 YLAQVFERCDQ 199 >gi|294506958|ref|YP_003571016.1| DNA polymerase III polC-type [Salinibacter ruber M8] gi|294343286|emb|CBH24064.1| DNA polymerase III polC-type [Salinibacter ruber M8] Length = 258 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 28/197 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V +D E G D R Q R ++ + +TG Sbjct: 17 LVFFDLEATGTDPQAARIIQIGMQRFVPSEDGAALDE--TIDVLVDPEEEIPAAVTDLTG 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++P + RI + + + GYN + +D + F R+ + Sbjct: 75 LSPDAVRQAP-PLGAHLDRIAPLLADAD--LAGYNALAYDIPLLQAEFERHG-----RTL 126 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVNAHDAKADV 181 + R +LD R P L L G +AHDA +DV Sbjct: 127 PGPDDRV-VLDPYRLEQVLRPRT--------------LSALYERYTGDALDDAHDALSDV 171 Query: 182 YATLALVWLIREKKPKL 198 A ++ Sbjct: 172 EAAGRVLQRQLADHDID 188 >gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] Length = 224 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 54/194 (27%), Gaps = 29/194 (14%) Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G + DR + V + T + P D +A + G++ + Sbjct: 2 DTETTGFEPETGDRIVEIGCVELLNHL-PTGRTYHQYINPQRDM--PEDAFKVHGLSAEF 58 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + A+ ++ F N + +N FD + Sbjct: 59 LSDKPL-FAQVAQDFLDFIGDAN---LVIHNAAFDVKFLNAELGWVKKPLIA-----PAR 109 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATL 185 D L + R + + + L L GI++ H A D Sbjct: 110 AVDTLLIARRRFPGAQN--------------SLDALCRRFGIDNSKRTLHGALLDSEILA 155 Query: 186 ALVWLIREKKPKLF 199 + + + F Sbjct: 156 EVYLELIGGRQPDF 169 >gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT 5713] Length = 929 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%) Query: 5 FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + D+ QF+ V + + E +TGI Sbjct: 7 YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPAEVKKLTGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I+ +N+ FD + + R Y Sbjct: 63 KNKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D ++ P S++L D++ + H++ H A +D A Sbjct: 115 -----LPMMDTVQLTQIIYPTL----------VSYRLIDVSKYLQLSHIHPHKADSDTKA 159 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 T L+ ++++ L K + V+++ Sbjct: 160 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLNKK 205 >gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 222 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 16/204 (7%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D V + + I E + DP+ V + I PQ Sbjct: 35 LDIETSGLDAEHDHIVSIGWVPIVN--QVIRLAEARYFLITPSGQNDPQQVVLHHIMPQM 92 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 R G+ ++ I F+ ++ + + + + ++ + W Sbjct: 93 -QRQGIP---LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVW----- 143 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L + +A ++P + + +D ++L + + AH A +D AT L Sbjct: 144 -LDTLKIEQAYAQYAPYNMPHSNAND----WRLSTVRKRYHLPAYQAHHALSDAIATAEL 198 Query: 188 VWLIREKKPKLFEYLYDYRNKNQL 211 + + + K + Sbjct: 199 YLAQQNRLFAKAYVPLELLMKASV 222 >gi|167621824|ref|YP_001676609.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] gi|167351565|gb|ABZ74295.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] Length = 299 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 46/178 (25%), Gaps = 32/178 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G++ D + A V + D F E ITGI Sbjct: 47 IYLDVETTGKNPVRDEIIELAMVPFQYDEAGRLCGVGAPFVALREPSAPISAEITRITGI 106 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A + I +I +N FD ++ Sbjct: 107 TNAMVAGQSIDPAMVAAFI------APAAVIVAHNASFDRRFTER--------------- 145 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ Q +G KL LA G H A+ D Sbjct: 146 --------FCEAFQAKGWACSMSQVDWAGEGFEGTKLSYLASQCGFFFDG-HRAENDC 194 >gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13] gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13] Length = 327 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 41/212 (19%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVR-----VDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 V D ET G +D + V+ + IE + P Sbjct: 78 IVFLDTETTGLSSDMDVIIELGLVKALFSPTAHRLVSIERIVSAYE--DPGKPITPFITE 135 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + E + + + +I +N FD + +R F Sbjct: 136 LTGITDDMVRGKRIDETMVAGFL------DDAVLIVAHNAAFDRPFFEK-RFRGF----- 183 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ + G + KL++L L +G AH A Sbjct: 184 -----------------EEKKWACSLVGIDWNGLGFKNLKLEELVLKSGY-FYEAHRACI 225 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 D A L+ +P F L K + Sbjct: 226 DCLALAWLL----HCQPDAFASLLKQAEKRTV 253 >gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2] gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2] Length = 191 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 12/189 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + AQ + + D + ++ A + G+T Sbjct: 2 YVFLDTETTGLHP--GQIAQLSYLVTDEDLNLKKVFNQYYSV----DHMSRSAAKVHGLT 55 Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + L +G+ + + +I +NI FD + + F R + Sbjct: 56 VEILDELSNGMTFEDTVDEVRDDLEDS---VIIGHNISFDIRFLKAEFERLGPEYVPKDK 112 Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + P ++ + + L+ A G V HDA+ D Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPNEGLEFTKKAYGCSDVGFHDARYDT 172 Query: 182 YATLALVWL 190 Sbjct: 173 GILYLCYKK 181 >gi|251772732|gb|EES53294.1| DNA polymerase III, epsilon subunit [Leptospirillum ferrodiazotrophum] Length = 288 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 50/184 (27%), Gaps = 36/184 (19%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D ET G D R + + V + E P I Sbjct: 29 EDLLFVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSL---INPGSPIPPMYTRIH 84 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GI +F+ ++ +N+ FD R Sbjct: 85 GIDDVMVEHSPT--------FLEFWMENGIRFQGKVVIAHNLSFDMGMINRELMRRDMAP 136 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 GN D + +++ S + KL LA + G+ H + H A Sbjct: 137 L------GNPGIDTVPILK-------------SLLPREKNHKLSHLAKSLGVRHDSRHRA 177 Query: 178 KADV 181 + DV Sbjct: 178 EDDV 181 >gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 255 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 ++ D ET G + R + V + F D E Sbjct: 21 KRIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRRLTGRH--FHVYIKPDRAIQEE 77 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + GIT + + E + + +F + +N FD + F Sbjct: 78 AIGVHGITDEFLIDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFE----- 128 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 ++ D + + +P L L GI+ H Sbjct: 129 ------KLNSAIGKTDDYCKVTDTLAMAKKIFPG-----KRNNLDILCDRYGIDNSHRTL 177 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D + L+ + Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200 >gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015] gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015] Length = 212 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V +D + ++ T +P +P+++ ITG Sbjct: 17 VVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEPKSLEITG 76 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E E ++ + I+ +N FD + R Y Sbjct: 77 IDLNNPLRGAVSEREALDKLLKPIRSAVKNHGCTRAILVGHNSFFDLNFLNAAIDRCTYK 136 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + + A G + AH Sbjct: 137 RNPFHAFSSFDTVTIAGLAYGQTVLARACE-----------------AAGLGWNNSEAHS 179 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 180 AVYDAEQTARLFCKVINQ 197 >gi|300741873|ref|ZP_07071894.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa M567] gi|300381058|gb|EFJ77620.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa M567] Length = 230 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 24/178 (13%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITGITP 65 +D ET G DV R + + ++ A + GIT Sbjct: 11 FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLA-----NPGIEIPEGAASVHGITT 65 Query: 66 QKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + A G + + + + N +D + R Sbjct: 66 EYARSHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNI-------- 117 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + A + P I + KL+ L +G+ NAH +KAD Sbjct: 118 -------AHGELPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHGVVLENAHTSKADA 168 >gi|153817923|ref|ZP_01970590.1| Gp39 [Vibrio cholerae NCTC 8457] gi|126511550|gb|EAZ74144.1| Gp39 [Vibrio cholerae NCTC 8457] Length = 184 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 22/193 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +I D ET G D R + + + D Q ++ PE I G Sbjct: 7 DNAIILDTETTGLDSD-ARIVEVSII--DAQTGIK----LYSSLVNPLCSISPEVTAIHG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + I + S + I YN + +F ++ Sbjct: 60 ITNDMVIDMP-TFDKVWNDIKGYLS--DAVIYVYN-----LDFDYRMFAQSLRPFGYPVA 111 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVN--AHDAKA 179 + + VMR F +D F +L + ++ + AH A A Sbjct: 112 NLVRFFGGGVCVMRWYANFYGSLC----GNDVTPRFQRLTNACYQQDVDTSDLTAHRALA 167 Query: 180 DVYATLALVWLIR 192 D T L+ + Sbjct: 168 DCEMTRRLINAVN 180 >gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans CJ2] gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] Length = 220 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 14/188 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G + D VR+ +P L E+V + + Sbjct: 43 VALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRL-SAESVRVHRLRE 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q G+ E ++ F + ++GY + + R + Sbjct: 102 QDVA-QGISADEAMMKLMYFI--GSRPLVGYY-----LEFDLAMINRVLFPMLGMGLPQP 153 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++V Y + + +RD G+ + + L + +AHDA D Sbjct: 154 K-----IEVSSMYYDYKFHQLPHHARDSGSIDLRFESLMKDLNLPLWSAHDALNDAIMAA 208 Query: 186 ALVWLIRE 193 +R+ Sbjct: 209 LAFLKLRQ 216 >gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 229 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + + + EA + G+ Sbjct: 4 IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V F+ F + +N FD + R+ Sbjct: 61 DEFLRDKPV----FAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRSGLPRLA----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R + +P L L G+++ H A D Sbjct: 112 PDQALDTLALARQRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] Length = 245 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I D ET G DR +FAG+ + + +S + P D EA Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + A+ ++I F I +N +FD + F R S Sbjct: 58 VHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G D L + R ++ L L ++ H Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176 >gi|33861178|ref|NP_892739.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639910|emb|CAE19080.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 270 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +I D ET G D D + + + + + S F + EA + G Sbjct: 47 ENILILDTETTGLDENKDEIIEVGCILFNVNTKSVLSQVSFL-----FPVSSNEAEHVNG 101 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + + + +I +N+ FD + Sbjct: 102 IS-AEVTNIKQPWEDGLNFFLKLVDCSD--LIVAHNVEFDKKWFGKGR------------ 146 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I W + + + DLAL+ I + H A +D + Sbjct: 147 ---------LPKLEKKWICSLEDINWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCF 197 Query: 183 ATLALVWLIRE 193 + Sbjct: 198 YISEVFKKCEN 208 >gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 240 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 6/111 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A + + + +A I GI+ ++ Sbjct: 11 FDLETTGTDPLEARIVT-ASIVGFHDGRVVRQRDWLA---DPGIRIPEQASAIHGISSER 66 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A +G E + I + + + N FD R+ Sbjct: 67 AAAEGRPVREVADEIAETLTGYWNQGVPVVAYNASFDLTLLAAELRRHGLP 117 >gi|297578875|ref|ZP_06940803.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536469|gb|EFH75302.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 236 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V Q + + + E++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEESIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRYIEREFLRQ------ISLNIWGEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302] gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302] Length = 906 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 19/213 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 I+D ET G DV D Q A V+V S + +D +P+ + Sbjct: 505 ETITIFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDREIPEMLGDIVNP 563 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I ++ + + E +R + T ++G+N + R Sbjct: 564 IIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNADYDI--HILANNLRREMPETALPN 619 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + +D L ++R + G +KL+ L +E N+H A ADV Sbjct: 620 ELSD-YFDSLHLIRLLR-------------PGLRQYKLKYLLEVLHLEGENSHLADADVN 665 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215 AT +LV +K ++ + ++++ I Sbjct: 666 ATQSLVAFCYDKAKEVVGEQQAFIGHKRVQERI 698 >gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] Length = 245 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 53/218 (24%), Gaps = 42/218 (19%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + E F +A + GI Sbjct: 4 IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPQRSMPQDAFKVHGIG 60 Query: 65 PQK-------------ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 P V A+ ++ F + +N FD + Sbjct: 61 PDLLEPPQQPGPGAVTLRDKPV-FAKVGQKFLDFVRDSK---MVIHNAAFDMKFLNAELD 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 D L + R + SP L L I++ Sbjct: 117 WMGLPKLPMDQA-----VDTLAIARKRFPGSPAT--------------LDALCRRFNIDN 157 Query: 172 VNA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 N H A D + + + F Sbjct: 158 SNRTLHGALLDSEILADVYLELIGGRQPDFGLSASNDK 195 >gi|298252829|ref|ZP_06976623.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis 5-1] gi|297533193|gb|EFH72077.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis 5-1] Length = 337 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 27/192 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-------CKPADDYLPDP 55 +FV+ D ET G + +D+ + V+ + IE + + Sbjct: 154 KNFVVIDCETTGLNSKVDKIIEIGAVKF-IDGK-IEEFQKLININCDSVSNFNKNNFILN 211 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 E + +TGIT GV + F ++GYN S + Sbjct: 212 EIIELTGITSSMLESYGVRLDLALKEFIDFVEKLP--VLGYNVQFD---MSFLNSALSSL 266 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 D + N +D+ ++ F +++L+ + I H Sbjct: 267 DERFDHSLSINKIFDISRFVKKEKKFL-------------KNYQLKTVLHEYNIAESVPH 313 Query: 176 DAKADVYATLAL 187 A D T L Sbjct: 314 RALLDARLTAHL 325 >gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27] gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8] gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27] gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus HB8] Length = 247 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 29/198 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G LD + +R++ F P P +TGI Sbjct: 74 VVLDLETTGLAPGLDEVIEVGLLRLEG-----GRRLPFQSLVRPSRPPSPFVERLTGIPR 128 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + + + + +N FD + R + Sbjct: 129 EALEEAP-SLEEVLEKAYPLLAD---ATLVIHNAAFDLGFLRPALEGLG-------YRLE 177 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 N D L + R G + L L+ + H A DV TL Sbjct: 178 NPVVDSLRLARRG-------------LPGLRRYGLDALSEVLELPRRTCHRALEDVERTL 224 Query: 186 ALVWLIREKKPKLFEYLY 203 A+V + Sbjct: 225 AVVHEVYYMLTSGRPRTL 242 >gi|18466779|ref|NP_569586.1| hypothetical protein HCM2.0114c [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506095|emb|CAD09981.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 185 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 22/189 (11%) Query: 8 YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D E+ G D + + + A R + E + + + DP+A + GI+ + Sbjct: 8 VDIESTGLDFTSGHKIIEIAITRY--ELETQKHIDSLEMRFNPRRSIDPKAQAVHGISLE 65 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + A+ + +I + + ++ +N FD + R+ F S+ Sbjct: 66 DLATEPL-LADHAGKIAAYMGACSA-LVAHNGEAFDLPFIRHEFG---------SYGVKL 114 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L+D M W + D + +L + AH A D + Sbjct: 115 PDIPLVDSMLDG--------LWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQ 166 Query: 187 LVWLIREKK 195 + REK Sbjct: 167 CFFKAREKY 175 >gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464] Length = 287 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----TELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacter sphaeroides 2.4.1] gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Rhodobacter sphaeroides 2.4.1] gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131] Length = 229 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 54/197 (27%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + + + EA + G+ Sbjct: 4 IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V F+ F + +N FD + R Sbjct: 61 DEFLRDKPV----FAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRAGLPRLA----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R + +P L L G+++ H A D Sbjct: 112 PDQALDTLALARQRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT] gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336] gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336] Length = 252 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +I D ET G + + V + + KP D L DPEA+ + Sbjct: 11 IILDTETTGMNEFGAHYEGHCIIEIGAVEM-INRRYTGRKLHLYIKP--DRLVDPEAIKV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + ++ F I +N FD + F ++ ++ Sbjct: 68 HGITDEMLADKP-DFSAIAQEFIDFIKGAELII---HNAPFDIGFMDYEFKKHNFNINT- 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L I++ H A Sbjct: 123 --ADICLITDTLQMARQMYPG--------------KRNSLDALCDRLNIDNSKRTLHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLF 199 D + + + LF Sbjct: 167 LDAEILGDVYLAMTGGQTSLF 187 >gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ] gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ] Length = 302 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 39/189 (20%) Query: 6 VIYDYETFGRDVALDRPAQFAGV------RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + D ET G + A D+ + V + I F E Sbjct: 45 LCLDTETTGLNPACDKIIELGIVAFQYDPLTSGIIKIIGRYAGFE---DPGIPLSAETTA 101 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ITGIT + G + ++ + + ++ +N FD + Sbjct: 102 ITGITDEMV--SGQSFDDA--QVCRLADQAS--LVIAHNAAFDRKFVEA----------- 144 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R+ + + Q + + ++ L+ L G +NAH A Sbjct: 145 --------RFPVFSKVPWG----CSMTQVDWQAERISTRVLEYLLFKFGW-FINAHRALD 191 Query: 180 DVYATLALV 188 D L ++ Sbjct: 192 DAEGLLGIL 200 >gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] Length = 311 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 31/186 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + + + +++ + E I E F P Y+P+ +TGIT Sbjct: 73 FCVVDIETSGG-INSGQIIEIGALKL-QNGEIIGKFETFVYAP---YVPE-NISELTGIT 126 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + F + +N+RFD + Y Sbjct: 127 AEHLKNAP-SLAFVMEQFKVFL---GQSVFVAHNVRFDYGFISATLEALGYGELLN---- 178 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D+ R A + + L L GI++ + H A +D A Sbjct: 179 --RKLCTIDLARRTIA--------------SPKYGLGTLKEILGIDNTH-HRALSDAIAA 221 Query: 185 LALVWL 190 + Sbjct: 222 AEIFKY 227 >gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 232 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 53/185 (28%), Gaps = 25/185 (13%) Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+N +D ET G DV R VD I + A Sbjct: 1 MSNSGTLATFDLETTGVDVETSRIVSACIALVDASGVVISRWDWLA---DPGVEIPEGAA 57 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I GI+ ++A +G A I Q ++ YN +D R Sbjct: 58 AIHGISTERARAEGRDAAIVVAEIVQTLKVTCALGIPLVVYNAP-YDLSLLDRECRRYSI 116 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 D R + + V R L+ + G+ +AH Sbjct: 117 DGLREPYIVIDPLVIDKAVDRYRRGKRT----------------LEVTSGLYGVALDDAH 160 Query: 176 DAKAD 180 DA +D Sbjct: 161 DAGSD 165 >gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] Length = 245 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I D ET G DR +FAG+ + + +S + P D EA Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + A+ ++I F I +N +FD + F R S Sbjct: 58 VHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G D L + R ++ L L ++ H Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176 >gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] Length = 938 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + ++ + +++ +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNEDVAKAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + ++ S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAVDTVELAQIVFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ +K L + + Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184 >gi|289209028|ref|YP_003461094.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] gi|288944659|gb|ADC72358.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] Length = 246 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 21/178 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET G D D V +D +I+ + D ++ I IT Sbjct: 56 FLAVDLETTGLDPEHDAILSIGWVAMD--GVRIDLSTADQRLVRADCPVPEQSAVIHRIT 113 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++A G + + ++ ++ + + YR + Sbjct: 114 DREAAG-GTTVDSALDALFEVLQ---GRVLVAHHAALELGFLEEACYRLY---------G 160 Query: 125 GNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++D +R A G P+ +L L + AHDA D Sbjct: 161 VRPPLPVVDTLRLAERQLRRAGRPIPADG-----MRLHTLRGRYNLPQYRAHDALFDA 213 >gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] Length = 191 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 12/195 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + AQ + + D + ++ D A + G+T Sbjct: 2 YVFLDTETTGLHP--GQIAQLSYLVTDEDLNLKKVFNQYY--LVDHM--SRSAAKVHGLT 55 Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 L +G+ + + +I +NI FD + + F R + Sbjct: 56 MDILDELSNGMTFEDTVDEVRDDLEDS---VIIGHNISFDIRFLKAEFERLGPEYIPKDK 112 Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + P ++ + L+ G V HDA+ D Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKKTYGCSDVGFHDARYDT 172 Query: 182 YATLALVWLIREKKP 196 Sbjct: 173 GILYLCYKKGVLLDH 187 >gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] Length = 203 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 20/192 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V +D ET G + +D A V++ + +P + + +A+ I G Sbjct: 32 NEYVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPDREII--EDAIKIHG 89 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + G+ E R F + ++GY ++ + Sbjct: 90 LRKKDL-ESGIPIEEAVDRFAHFI--GSRPLVGYYLEFDVAMVNKYFKKLSG-------- 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + + G + + I HDA D Sbjct: 139 -------TTLPNKQIEVSALYYDFKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAI 191 Query: 183 ATLALVWLIREK 194 T + ++ K Sbjct: 192 MTALIFLKLKNK 203 >gi|169840886|ref|ZP_02873999.1| exonuclease I [candidate division TM7 single-cell isolate TM7a] Length = 60 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 QFAG+R D + I DD LP P A+ +TGITPQK + DG E++F++ + Sbjct: 2 QFAGIRTDADFNIIGEPYNLLVALNDDTLPSPSALMVTGITPQKTVSDGYTESQFAKYL 60 >gi|312884148|ref|ZP_07743860.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] gi|309368196|gb|EFP95736.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] Length = 239 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 52/193 (26%), Gaps = 12/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET G D D V I + + KP E+V I GIT Sbjct: 49 FLAMDFETTGLDSNDDDIITIGTVPFTIDRIMINKAKHWTVKPRKQL--PEESVVIHGIT 106 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 L + S + ++ + R + + + Sbjct: 107 HSDILDAP----DLSGVYREVLEQMAGKVMVVHYQRIEREFFDKALKTRINEGIE----- 157 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + G+ + S +L G+ H A D AT Sbjct: 158 -FPVIDTMQLETIAQQKMTSGLINRLKRRQPESVRLGASRSRYGLPLYPPHHALTDAVAT 216 Query: 185 LALVWLIREKKPK 197 L+ K Sbjct: 217 AELLQAQIAHHYK 229 >gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1] gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1] Length = 272 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 12/173 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F I D ET G + + + V+V R I+ E +C+ + ITGI Sbjct: 69 FCIVDIETNGSKIDKHQIIEIGAVKV-RDGVIIDKFESLVYCR-----EINKHITEITGI 122 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + +++F S I ++++FD + + + Sbjct: 123 SVEDTKNAPN----LKKVLYEFKSFLGNAIFVAHDVKFDYKFISLSMQKIGLEPLLN-RS 177 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + YA S + + D+ G+ ++ H+ Sbjct: 178 ICSLALAERTIESYRYALSYLNDSLHLNPNATHHRAMSDVITTYGLFMLSLHN 230 >gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LMA2] gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LMA2] Length = 184 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 31/197 (15%) Query: 5 FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 F ++D ET G R +FAGV D + + ++ E F C + + Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITG+ + ++ + +++ FFS + I +N+ FD + R + Sbjct: 59 TKITGLKNEDLIKHP-SFLDQRQKVRDFFSRADANI--AHNLPFDKFMLTCDLARGKFGL 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 ++ + + + + + +LQ L +V H A Sbjct: 116 DEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158 Query: 178 KADVYATLALVWLIREK 194 DV + + Sbjct: 159 LDDVRLLHEVCKRMGVY 175 >gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 474 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 76/243 (31%), Gaps = 33/243 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +++I ET G + +D + +R+ +++ + F + EA I G Sbjct: 5 ENYIIVSLETTGLNHLVDEILKIEAIRI-ENGNIVDTFKEF---IKPKFEIPKEASRING 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +E + + F ++ YN F F + Sbjct: 61 ITFEDVKNSPSIE-DVLDKFKNF-RKKGDILVAYN----------AEFVSKFIGFNFKRY 108 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N + +D++ + + S+ L+ +A I+ + Sbjct: 109 KNSIFSHEFIDLLSLVRYIYKNI----------PSYNLKYVATYLKIDS-------TNKD 151 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 T+ +++ K K+ + N ++ + ++ + L+ Sbjct: 152 KTIICYEILKNLKNKIGDNQEKIFNGSECIIKYLDEKKLKKLNKDSGYKKEVKKKWLLII 211 Query: 243 VAW 245 + + Sbjct: 212 LTF 214 >gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] Length = 938 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + ++ + +++ +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNEDVAKAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + ++ S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAVDTVELAQIVFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ +K L + + Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184 >gi|157375459|ref|YP_001474059.1| DNA polymerase III subunit epsilon [Shewanella sediminis HAW-EB3] gi|157317833|gb|ABV36931.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 238 Score = 74.1 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 12/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D + V ++I + + +++ I GIT Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPF--TLQRIACRQAKHWFVTPEDKLQEDSIIIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + Q I+ + R + + + Sbjct: 106 HSDLKGAP----DLLRILEQLLDELAGKIVVVHYRRIERDFFDAALRSLIKEGIV----- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + I P ++ S +L + + HDA D AT Sbjct: 157 -FPVVDTMQIEADIQQARPRSFIDWLKNTRPESIRLANSRTRYNLPTYPPHDALTDAIAT 215 Query: 185 LALVWLIREKK 195 L+ Sbjct: 216 AELLQAQIHHH 226 >gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + + + EA + G+ Sbjct: 12 IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V +E +F + +N FD + R + Sbjct: 69 DEFLRDKPV-FSEIGSAFLEFV---GEARLVIHNAAFDMKFLNFELGRVGLPRLPFE--- 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R + +P L L G+++ H A D Sbjct: 122 --RALDTLALARKRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 165 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 166 ILAEVYLELIGGRQPDF 182 >gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 842 Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 29/203 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + + D E G + Q V + + I + + + +T Sbjct: 28 TRKYAVVDLEATGASHSAS-IIQVGIVII-ENEQII---QTYTTDVNPHKPLSKAIIRLT 82 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + +E + I+ C+ +N++FD + ++ Sbjct: 83 GITDAQLQQAP-DFSEVAADIYHLIDD---CVFVAHNVKFDANLLAEHLFLEGFELLT-- 136 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L +L I+ +AH A AD Sbjct: 137 -----PRVDTVELAQVFYPTFE-------------KYSLGNLTELLKIDLSDAHTAIADA 178 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 AT L +++K L + + Sbjct: 179 KATAELFLKLKQKMTDLPKLTLE 201 >gi|116074604|ref|ZP_01471865.1| Exonuclease [Synechococcus sp. RS9916] gi|116067826|gb|EAU73579.1| Exonuclease [Synechococcus sp. RS9916] Length = 317 Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 29/199 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +I D ET G D + + + D ++ + + F + A I Sbjct: 86 PRTLLILDTETTGLDPETEHCLEVGAILFDVPSRQVLAQQSFLLPVQAN-----AAEPIN 140 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P R ++ +N FD + Sbjct: 141 RI-PAAVTRLAQPWEAALAYFQSLLDAAE--VLVAHNAAFDRQWFGRGC----------- 186 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + S D ++WP ++DLALA + AH A D Sbjct: 187 ----------LPSTAKPWLCSMDDMRWPKNRQLRARPSVRDLALAYEVPVWAAHRALTDC 236 Query: 182 YATLALVWLIREKKPKLFE 200 + + + +L Sbjct: 237 IYIAEVFRRCEDLEQRLVH 255 >gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus mutans UA159] gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit (3'-5' exonuclease) [Streptococcus mutans UA159] Length = 820 Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 29/203 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + + D E G + Q V + + I + + + +T Sbjct: 6 TRKYAVVDLEATGASHSAS-IIQVGIVII-ENEQII---QTYTTDVNPHKPLSKAIIRLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + +E + I+ C+ +N++FD + ++ Sbjct: 61 GITDAQLQQAP-DFSEVAADIYHLIDD---CVFVAHNVKFDANLLAEHLFLEGFELLT-- 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R D +++ + Y + L +L I+ +AH A AD Sbjct: 115 -----PRVDTVELAQVFYPTFE-------------KYSLGNLTELLKIDLSDAHTAIADA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 AT L +++K L + + Sbjct: 157 KATAELFLKLKQKMTDLPKLTLE 179 >gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2053A-b] gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2053A-b] Length = 299 Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 29/180 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +VI D ET G D + + +++ + IE C + +T Sbjct: 128 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYS---CIVKQNITLPNAIKILT 181 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + G E+ + + F + ++GYN FD + RN Sbjct: 182 GISDAELKN-GKDESVAIKELCTFI--GDKALVGYNV-NFDIRFINEALKRNGQ------ 231 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N +D++ ++ F ++KL + GI H A DV Sbjct: 232 SQLTNKVYDVMKYVKRDKMFL-------------KNYKLDTVLSEYGINIKVPHRAIEDV 278 >gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 236 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 13/193 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + D V E+I E++ I GIT Sbjct: 47 FVAMDFETTGLNSQNDDIVSVGLVPF--NLERIYCKHSRHWVVQPRRNLHEESILIHGIT 104 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ I + ++ + + ++ N + ++ + Sbjct: 105 HSEVDDAP----DLNQIIEPLLEALSGKVVVVHYAAIERHFLNNALLLRLKEGIEFALVD 160 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R + S +L D + H+A D AT Sbjct: 161 TMEIEKRALKARQGLLGRLFNTKL-------GSLRLTDCRARYSLPAYQNHNALTDALAT 213 Query: 185 LALVWLIREKKPK 197 L+ + Sbjct: 214 AELLQAQLSYHYR 226 >gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str. Wilmington] gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 229 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 26/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + K+ + + F C + EA I GI+ Sbjct: 7 IILDTETTGLDPQQGHRIIEIGAI---EMVNKVLTGKHFHCYINPERDMPFEAYKIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + I +N FD + + + + Sbjct: 64 GEFLKDKPLFHT-IANDFLKFIADSTLII---HNAPFDIKFLNHEL--SLLKRTEIKFLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R+++ + + L L +++ H A D Sbjct: 118 LTNTIDTLVMARSMFPGA--------------RYSLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYL 202 + + + F+ + Sbjct: 164 LLAEVYVALTGGRQSTFKMI 183 >gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] Length = 256 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 51/197 (25%), Gaps = 30/197 (15%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ D ET G + + V + F + EA+ + Sbjct: 10 VVLDTETTGMNFNGPPQIGHNIIEIGAVEL-INRRLTGR--TFHVYIKPPREVEEEAIKV 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT AE + F I +N FD + F + Sbjct: 67 HGITNAFLQDKP-TFAEIAHEFLAFIQGAELII---HNAPFDVAFIDQEFSSLVNPPSKT 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 + D L + R +Y L L GI++ H A Sbjct: 123 --AEMCTVTDTLQMARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166 Query: 179 ADVYATLALVWLIREKK 195 D + ++ + Sbjct: 167 LDAEILADVFLMMTGGQ 183 >gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] Length = 218 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 63/205 (30%), Gaps = 26/205 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV---RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V D W + + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P+ LR V E E I + N +I +N FD + R Sbjct: 80 IDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAAAERVGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + +A + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAANIPFDSTQAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A D T L + + ++ + Sbjct: 183 ALYDTEQTATLFCELVNRWKRMGGW 207 >gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] Length = 415 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 28/198 (14%) Query: 5 FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G R + A V +D+ P D P I GI Sbjct: 2 YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLL-NPQRDLGPQ----HIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 L + +R + + ++ +N+ FD + R F R Sbjct: 57 LTADVLAAPE-FVDVARHLGALLA---GRMVVGHNVEFDLGFLRAEFARLG--------- 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 V+ I S + + L A GI H A AD A Sbjct: 104 ---------HVVPLITERSMCTMALAGYLYPGSKRTLGACCAAAGISLQGWHSALADTRA 154 Query: 184 TLALVWLIREKKPKLFEY 201 T L P + Sbjct: 155 TAELFATYLRSFPSPPPW 172 >gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 189 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 24/182 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D + + +D + + + V P D EA I GIT Sbjct: 19 VVLDTETTGLD-DQAEVIEVS--VMDMRGKVLFDQLVRPLNPVPD-----EAADIHGITS 70 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + S ++ YN FD W Sbjct: 71 ESLADKP-NFPDVYHSLKRVIS--GKTVVAYNA-DFDSRLLMQTCAAYGLPVIEADWQ-- 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 A+ A++ + ++ G L A GIE AH A AD + T+ Sbjct: 125 ----------CAMNAYTRYRKEPDAKRGGYRRQSLAKAAAQMGIEVHGAHRALADCFTTV 174 Query: 186 AL 187 + Sbjct: 175 EV 176 >gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 246 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 30/202 (14%) Query: 3 NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D ET G + + V + + F D + EA Sbjct: 10 QRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEI-INRKLTG--NSFHVYIKPDRTIEVEA 66 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + + V E +F + +N FD + +R + Sbjct: 67 IGVHGITDEFLIGKPV-YKEVHDEFLEFIKGAE---LVAHNAPFDVGFMDYE-FRKLNPN 121 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175 + ++ D L + + I+ L L GI+ H H Sbjct: 122 IGKT-EDFCKVTDTLAMAKKIFPG--------------KRNNLDILCSRYGIDNSHRTLH 166 Query: 176 DAKADVYATLALVWLIREKKPK 197 A D + L+ + Sbjct: 167 GALLDAEILADVYLLMTGGQTS 188 >gi|290963218|ref|YP_003494400.1| exonuclease [Streptomyces scabiei 87.22] gi|260652744|emb|CBG75877.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 215 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 21/196 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G D+ D V V +I+ + F+ ++ + G+ Sbjct: 23 YCVIDLETTGLDLRRDEIISVGAVPVREG--RIDLGDSFYSLVRPRCAVSVASIKVHGLR 80 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P A + + S ++ + + + W Sbjct: 81 PGDLDSAPDP-ATVGQALSPRLS---GRVVVAHAAWIERAFLSRTQSTVG-------WSQ 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D + RA + D L+ LA G+ H A D T Sbjct: 130 VRAVVDTAALARATGC--------WAGHDSGREPPLELLARRLGLPVCTPHHALGDALTT 181 Query: 185 LALVWLIREKKPKLFE 200 + + + + Sbjct: 182 ATVFLALAARAERTRH 197 >gi|288554471|ref|YP_003426406.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4] gi|288545631|gb|ADC49514.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4] Length = 245 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 55/202 (27%), Gaps = 26/202 (12%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+++D ET G D V++ + ++ E F+ P + + +TG Sbjct: 58 SFIVFDLETSGFFPDKGDEILSIGAVKM--KGAEVLFEESFYSTVQCKKEPSSDVLSLTG 115 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T ++ E ++F ++ ++ + S + Sbjct: 116 LTLEELQSS-RPLIEVLNDFYEFV--GGGTLVAHHATHEKRFMSHMTWQLMRMPFA---- 168 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D + R + L + + I H A D Sbjct: 169 ---HRIIDTTFLTRVVAH-------------DENLVTLDECCIYYNIPITTRHHALYDAK 212 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T L + + Sbjct: 213 MTAELWGQSLKLAQEKGFSTLR 234 >gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] Length = 255 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I D ET G DR +FAG+ + + + + P D EA Sbjct: 16 MSKRQIILDTETTGLYAEGGDRLVEFAGLEM-INRQITGNNLHLYVHPERDM--PEEAAK 72 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R S Sbjct: 73 VHGLTIEVLEEKNAPPFAEVGRQIADFIRDAELII---HNAKFDVGFLNMEFRRMGLPSI 129 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 130 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRLSVDRSKRVLHG 172 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 173 ALIDCELLGEVYLAMTRQQ 191 >gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22] gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55] gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22] gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55] Length = 215 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E + I + S + I+ +N FD ++ R Sbjct: 80 INPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T +A + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMAFDGAQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTEQTAQLFCEIVNR 200 >gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA19] gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 244 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T Q AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRVGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654] gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Rhodobacterales bacterium HTCC2654] Length = 230 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + T + P D A + G++ Sbjct: 4 IVLDTETTGFDPKTGDRMVEIGAVEL-FNHMPTGRTYHQYINPQRDM--PEGAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V A+ + +F + +N FD + Sbjct: 61 EEFLKDYPV-FADIADAFLEFIGDAK---LVIHNASFDVPFLNAELGWCKRRQIPMDQS- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D L + R + + + L L GI+ H H A D Sbjct: 116 ----IDTLLIARKKFPGAGN--------------SLDALCRRFGIDNSHRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKL 198 + + + Sbjct: 158 ILAEVYLELIGGRQPD 173 >gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 19/139 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 + D ET G D DR + + E I+ F + A I Sbjct: 10 IALDTETTGLDADGGDRIIEMGCI------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT +E + + F ++ +N FD + + D + S Sbjct: 64 GITVDMLKDKPK-FSEIADKFLDFI---GNSVLVIHNAVFDIKFIKME-----LDKIQKS 114 Query: 122 WDNGNSRWDLLDVMRAIYA 140 +++ D L + R + Sbjct: 115 YNSDFQVVDTLILARKKFP 133 >gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1] gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1] Length = 187 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 32/190 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + + D ET G A D+ + +++ R + I+ + P +TG Sbjct: 20 DDYCVIDLETTGLSWADDKIIEVGILKI-RNQQIIDKYSQL---INPEREVSPFITKLTG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT L E + F I+ +N FD + N F+ + + Y Sbjct: 76 ITNDMLLGMP-TLDEIRDDVFSFI---GDDILLGHNTSFDLNFVANQFHIDIENEY---- 127 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D ++ P +L D+ + + N H + AD Sbjct: 128 ---------MDTLQFCRKVYPHMKH----------HRLTDMVQYLNLSN-NEHRSIADCI 167 Query: 183 ATLALVWLIR 192 AT L I+ Sbjct: 168 ATYELYEKIK 177 >gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 201 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 52/192 (27%), Gaps = 25/192 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV++D ET G + D+ + +++ ++ + F D E I G Sbjct: 16 SFVVFDLETTGLNPDNGDQIIEMGAFKIEEGFKLVRDP--FHTMVKPDIFIPNE---IHG 70 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + ++ F ++ + D + R D Sbjct: 71 ITEMELKNAP----DICTALYDFIDFSRGSVLVAHKASKDIAFLRAAMREYLIDD----- 121 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D + + +Y + S H A D Sbjct: 122 SFDFLVIDTIKFSQRLYPDFKYHNLDYLIEKHHISI----------NSKFKRHRAIYDAE 171 Query: 183 ATLALVWLIREK 194 AT + + K Sbjct: 172 ATAKIFLKMIRK 183 >gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis subsp. sepedonicus] gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 233 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 9/123 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET G DV R V +D Q E +E + A I G Sbjct: 7 DTLASFDLETTGVDVETARIVTACIVVLDAQGEVVERHDWLA---DPGVEIPAGAAAIHG 63 Query: 63 ITPQKA----LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T ++A G V E I + F+ ++ YN +D R+ + Sbjct: 64 VTTERARAEGRDAGAVVLEIVTTIREMFAR-GLALVVYNAP-YDLTLLNREAVRHGVEPL 121 Query: 119 RWS 121 R + Sbjct: 122 RDT 124 >gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] Length = 231 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 49/197 (24%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + F A + G+ Sbjct: 4 IVLDTETTGFEPESGDRIVEIGAVEL-YNHMPTGR--TFHKYINPQRAMPEAAFAVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++ F + +N FD + W Sbjct: 61 DDFLRNKPL-FAEIAQEFLDFVLDAK---LVIHNAAFDMKFLNAELGWLKLPHLPWEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L I++ H A D Sbjct: 116 ----IDTLAIARQKFPGSPA--------------SLDALCRRFQIDNSARTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] Length = 217 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTEQTAELFCELVNR 200 >gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae 35/02] gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae MS11] gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID18] gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID332] gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-93-1035] gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI2] gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae TCDC-NG08107] Length = 244 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T Q AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102] gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102] Length = 245 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I D ET G DR +FAG+ + + +S + P D EA Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + A+ ++I F I +N +FD + F R S Sbjct: 58 VHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G D L + R ++ L L ++ H Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176 >gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195] gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195] Length = 307 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 30/196 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V D ET + V+ + ++S + D +FI Sbjct: 1 MSYSYVALDVET--ANDFRGSVCSIGLVKF-KDGNIVDSFYTL---INPEEEFDDFNIFI 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP+ L E + I F + I+ + +FD Sbjct: 55 HGITPEDVLDSP-TFPEVRKAIVDFI---GSDIVVAHFAQFDMGA---------LKDVYQ 101 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ + + R G ++KL+ LA IE + H+A +D Sbjct: 102 KYELDFDNIEYICSYRLAKV----------ALPGQLNYKLKRLAKNLNIELDH-HNALSD 150 Query: 181 VYATLALVWLIREKKP 196 A+ ++ + Sbjct: 151 ARASGLILEYLLSTNS 166 >gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107] gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107] Length = 285 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 33/194 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP--EAVF 59 +I D ET G + + + D Q + + + F LP A Sbjct: 53 PRTLLIIDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFL-------LPAETNAAEP 105 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I I P R E + ++ +N FD + Sbjct: 106 INRI-PAAVTRLSQPWKEALLWFQNLLDAAD--VLVAHNAAFDRQWFGRGE--------- 153 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L + + S + ++WP+ + ++DLALA G+ AH A Sbjct: 154 ------------LPAVTQPWLCSMEDMRWPADRQLRSRPSVRDLALAYGVPVWAAHRALT 201 Query: 180 DVYATLALVWLIRE 193 D + + Sbjct: 202 DCIYLAEVFARCDD 215 >gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026] Length = 938 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + ++ + +++ +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNEDVAQAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAVDTVELAQIAFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ +K L + + Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184 >gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533] gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533] Length = 938 Score = 73.7 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + ++ + +++ +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNEDVAQAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAVDTVELAQIAFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ +K L + + Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184 >gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430] gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430] Length = 226 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V ++D + + T F +P + EA+ G Sbjct: 22 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 81 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N ++ +N FD + R Sbjct: 82 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A G+ A Sbjct: 142 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACNAAGMSFDSAQA 182 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 183 HSALYDTLQTADLFCELVNR 202 >gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis] Length = 377 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 31/209 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G D+ + V+ + + + +TGI Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGI 185 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + ++ E + + II +N FD + + Sbjct: 186 TDEMVQGK-AIDQEAVTQFLEEV-----DIIIAHNAAFDRPFFDR------MFPEVITKV 233 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G SR D + + S KL+ L + Sbjct: 234 WGCSRVD-----------------IDWKAEKIESHKLEYLTYKYNFFYEGHRAVIDCRAG 276 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212 L + K + + L + +K + Sbjct: 277 LHLLAQTLPITKTLVLKQLLNNCHKTRFN 305 >gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946] gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946] Length = 224 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V ++D + + T F +P + EA+ G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N ++ +N FD + R Sbjct: 80 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A G+ A Sbjct: 140 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACNAAGMSFDSAQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTLQTADLFCELVNR 200 >gi|197261383|ref|YP_002154199.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LBL3] gi|197244473|emb|CAR31208.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LBL3] Length = 184 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 65/197 (32%), Gaps = 31/197 (15%) Query: 5 FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 F ++D ET G R +FAGV D + + ++ E F C + + Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITG+ + ++ + +++ FF+ + I +N+ FD + R Sbjct: 59 TKITGLKNEDLIKHP-SFLDQRQKVRDFFARADANI--AHNLPFDKFMLTCDLARGKLGL 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 ++ + + + + + +LQ L +V H A Sbjct: 116 EEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158 Query: 178 KADVYATLALVWLIREK 194 DV + + Sbjct: 159 LDDVRLLNEVCKRMGVY 175 >gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582] gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582] Length = 226 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D+ + + T F +P + PEA+ G Sbjct: 31 VVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAAAERAGLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + +A + AH Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAAGMAFDSSQAHS 193 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 194 ALYDTEQTALLFCELVNR 211 >gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 7/109 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V P A I G+T Sbjct: 12 FDTETTGVDVEEDRIVSAALVVQDAAG---GRLRVTRWLVNPGIPVPPGATEIHGLTDDH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 R+G A I + + ++ N FD R+ Sbjct: 69 LQRNGRWPAPVVEEIARSLAEQCATGRPLVVMNAP-FDLTLLDRELRRH 116 >gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3] gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3] Length = 215 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E + I + S + I+ +N FD ++ R Sbjct: 80 INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T +A + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMPFDGAQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTEQTAQLFCEIVNR 200 >gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] Length = 191 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 29/190 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ +D ET + A DR + + V E + D + + Sbjct: 1 MNGRYIAFDVET--PNYANDRMSAIG-ITVVEAGEIAGEYYTL---VNPEQRFDRFNIAL 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP+ E R I ++ +N FD Sbjct: 55 TGITPEMVADKP-TFPELWREIGPLMDSG---LLIAHNAPFDMSVLAKCLRDYG------ 104 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +R P + KL L+ G+E + H +D Sbjct: 105 --------ICWHPTVRYACTCQMSRRLLP----QLPNHKLNTLSDYLGLELDHHHAG-SD 151 Query: 181 VYATLALVWL 190 A ++ Sbjct: 152 SMACGEILLY 161 >gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 230 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 29/195 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + DR + GV + + P A + G+ Sbjct: 4 IVLDTETTGFEPSEGDRLVEIGGVEL-FNHVPTGRVYHQYINPQRSMPQS--AFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + F + +N FD + Sbjct: 61 DDFLADKPL-FAEVAEAFLDFIGDAK---LVIHNAAFDMKFLNAELGWLGKPLLPMEQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R + SP L L G+++ H A D Sbjct: 116 ----IDTLAIARRKFPGSPA--------------SLDALCRRFGVDNSAREKHGALLDSE 157 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 158 ILAEVYLELIGGQQP 172 >gi|218148597|ref|YP_002364365.1| hypothetical protein PP141_gp57 [Pseudomonas phage 14-1] gi|218059793|emb|CAU13913.1| hypothetical protein [Pseudomonas phage 14-1] gi|294663797|gb|ADF29351.1| putative DNA polymerase III epsilon subunit [Pseudomonas phage JG024] Length = 184 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 65/197 (32%), Gaps = 31/197 (15%) Query: 5 FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 F ++D ET G R +FAGV D + + ++ E F C + + Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITG+ + ++ + +++ FF+ + I +N+ FD + R Sbjct: 59 TKITGLKNEDLIKHP-SFLDQRQKVRDFFARADANI--AHNLPFDKFMLTCDLARGKLGL 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 ++ + + + + + +LQ L +V H A Sbjct: 116 EEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158 Query: 178 KADVYATLALVWLIREK 194 DV + + Sbjct: 159 LDDVRLLHEVCKRMGVY 175 >gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218] Length = 224 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 16/204 (7%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D V + + I E + DP+ V + I PQ Sbjct: 37 LDIETSGLDAEHDHIVSIGWVPIVN--QVIRLAEARYFLITPSGQDDPQQVVLHHIMPQM 94 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 R G+ ++ I F+ ++ + + + + ++ + W Sbjct: 95 -QRQGIP---LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVW----- 145 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L + +A ++P + +D ++L + + AH A +D AT L Sbjct: 146 -LDTLKIEQAYAQYAPYNTPHSNAND----WRLSTVRKRYHLPAYQAHHALSDAIATAEL 200 Query: 188 VWLIREKKPKLFEYLYDYRNKNQL 211 + + + K + Sbjct: 201 YLAQQNRLFAKAYVPLELLMKASV 224 >gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 442 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 28/209 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D E G +R A + V E ++ + DP +TGIT Sbjct: 3 FAVIDIECTGGTFGSERIIDVA-IFVLENGEVVDQLVSL---VNPEKGIDPYVTKLTGIT 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E ++R+ + C +NI FD + F +D Sbjct: 59 NKMVRTAPK-FYELAKRVVKITED---CTFVAHNISFDYRVFQQEFESMEFD-------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 A ++ L+ ++ G+ + H A+ D T Sbjct: 107 ------------YHRATLDTIPYCERIFPDWENYGLKTVSKELGLVNSARHRAEGDARLT 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK 213 L L+ ++ EK + + +R+ Sbjct: 155 LELLKILLEKDRDAYLSKVHVSKEASVRR 183 >gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] Length = 229 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 54/197 (27%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + + + EA + G+ Sbjct: 4 IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V F+ F + +N FD + R Sbjct: 61 DEFLRDKPV----FAAIGRAFLDFVGEARLVIHNAVFDMKFLNFELGRAGLPRLA----- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R + +P L L G+++ H A D Sbjct: 112 PDQALDTLALARQRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003] gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB 1003] Length = 231 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 28/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + V + + + EA + G+ Sbjct: 4 IVLDTETTGFEPSEGHRIVEIGAVEL-MNHVPTGR--TYHQYINPERAMPQEAFAVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ F + +I +N FD + Sbjct: 61 DDFLRDKPK-FGAIAQDFLDFIGDDSKLVI--HNAAFDMKFLNAE--------------L 103 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 G + LL + RA+ + ++P L L GI++ H A D Sbjct: 104 GWVQKPLLPMDRALDTLAMARRKFPGSPAT-----LDALCRRFGIDNSARTLHGALLDSE 158 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 159 ILAEVYLELIGGRQPGF 175 >gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568] gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568] Length = 226 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 26/211 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + + T F +P + PEA+ G Sbjct: 31 VVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + +A + AH Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAADIPFDSAQAHS 193 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207 A D T L + + +L + N Sbjct: 194 ALYDTEQTAQLFCELVNRWKRLGGWPLAVTN 224 >gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] Length = 228 Score = 73.7 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + DR + V + + EA + G+ Sbjct: 4 IVLDTETTGFEPSEGDRIVEIGAVELIGHM-PTGR--TYHQYINPQRTMPAEAFAVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + F + +N FD + + Sbjct: 61 DDFLADKPL-FKDIADDFLTFIGDAK---LVIHNAAFDMKFLNAELGWLHKPALPM---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 N D L + R + SP L L GI++ H A D Sbjct: 113 -NRAVDTLMIARRKFPGSPA--------------SLDALCRRFGIDNAARTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC 33030] gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC 33030] Length = 233 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 66/232 (28%), Gaps = 39/232 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A VR+D T +A I GIT +K Sbjct: 20 FDLETTSANPREARIVTSALVRIDGSSMTATETLA-----DPGVDIPEQAARIHGITTEK 74 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G + + ++ +N + Sbjct: 75 ARAEGRPHDDVLQETVAAIKQAWDEGLTLVVFNAPYDLSVLRA----------LTGDFTV 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D L + RA+ + G + L L+ G+ NAH+A +D A Sbjct: 125 TGPVFDPLLIDRAMDRYRKGGKR-----------NLGALSEFYGVRLDNAHEATSDATAA 173 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 + W K++ L +L ++ + H + Sbjct: 174 ARIAWKQV---NKVWPQLSQM-------ELDELMEFQAVQHFEIQTEFRKFC 215 >gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 245 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 34/232 (14%) Query: 2 TNHF---VIYDYETFGRDVA-----LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 + ++ D ET G + A + + V + + F + L Sbjct: 1 MKKYDRKIVLDIETTGMNPAGCFYKNHKIIEIGAV---EMINNVFTGNNFHSYIQPNRLI 57 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 D ++ I GIT L E S + ++ + + I +N +FD + N Sbjct: 58 DKQSFKIHGITDNFLLDKPKFH-EISVKFLEYITNSDLII---HNAKFDVGFINYEL--N 111 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEH 171 +S + + + D L + R ++ L L + H Sbjct: 112 MINSDKRKISDYCNVVDTLPLARQLFPG--------------KKNSLDALCNRYKINVSH 157 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 + H A D + + + + N N ++K + + P Sbjct: 158 RDFHSALIDAKLLAKVYTFMTSFQQSI-SIFDKNSNLNSIQKNAKLDSRVPF 208 >gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] Length = 230 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D ET G D A DR + + + F + A + G++ Sbjct: 4 IIFDTETTGFDPASGDRMVEIGCIEL-VNRVPTGR--TFHAYYHPERDMPAAAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + V + F + +N RFD + + + Sbjct: 61 ADFLAKHPVFSLGAL-ELLDFLEDS---PLVAHNARFDFGFLNHELTLCGHP-----QVG 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D + + R ++ + L L GI+ H H A D Sbjct: 112 MHRMIDTVAIARQLHPGA--------------KHSLDALCTRYGIDRSHRVKHGALLDAE 157 Query: 183 ATLALV 188 L Sbjct: 158 LLAQLY 163 >gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 3008A-a] gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2052A-d] gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN 1401G] gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2052A-d] gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 3008A-a] gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN 1401G] Length = 299 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 29/180 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +VI D ET G D + + +++ + IE C + +T Sbjct: 128 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYS---CIVKQNITLPNAIKILT 181 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + G E+ + + F + ++GYN FD + RN Sbjct: 182 GISDAEL-KTGKDESVAIKELCTFI--GDKALVGYNV-NFDIRFINEALKRNGQ------ 231 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N +D++ ++ F ++KL + GI H A DV Sbjct: 232 SQLTNKVYDVMKYVKRDKMFL-------------KNYKLDTVLSEYGINIKVPHRAIEDV 278 >gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032] gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032] Length = 223 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + T F +P + + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + R Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L +A G+ A Sbjct: 140 ------RNPFHPFVTFDTAALSGLALGQTV-------------LAKACIAAGMPFDSAQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTEQTALLFCEIVNR 200 >gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894] gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + T F +P + + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + R Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L +A G+ A Sbjct: 140 ------RNPFHPFVTFDTAALSGLALGQTV-------------LAKACIAAGMPFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTEQTALLFCEIVNR 200 >gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 28/195 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ D ET G + D+ + +++ + ++ C + + E + +TGI Sbjct: 5 NYIAIDLETSGIKLRSDKIIEVGLLKI-KDSHITDTFS---CLINPEIEINEEILRLTGI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ E I +F + + +N FD + + R Sbjct: 61 KKRELYNA-ESINEVIGHIVEFCEDYD---LLGHNTVFDYSFIKREASRAGL-------V 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + L D GIE N H A +D Y Sbjct: 110 FDKKGLDTYKLCK-------------KILPADIKKNLTDACRYFGIERKNPHRAFSDAYY 156 Query: 184 TLALVWLIREKKPKL 198 T L I E P Sbjct: 157 THLLFQKIMENFPDF 171 >gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris] Length = 1341 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 14/116 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G D P + A + T + AD +A +TGIT Sbjct: 137 IVFDLETTGLSKEKDHPVEIAA-----EAPLSGRTFSTLIRLADGMSISTKAEEVTGITT 191 Query: 66 QKALRDGVV-EAEFSRRIHQFFSV--------PNTCIIGYNNIRFDDYYSRNIFYR 112 + + + +F ++G+N RFD + R Sbjct: 192 AQCKDPSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKR 247 >gi|295693069|ref|YP_003601679.1| CRISPR-associated protein, cas2 [Lactobacillus crispatus ST1] gi|295031175|emb|CBL50654.1| CRISPR-associated protein, Cas2 [Lactobacillus crispatus ST1] Length = 298 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 26/193 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G ++ D+ ++ E F+ D IT + Sbjct: 128 SLAVLDIETTGLNLEKDKIISIGAIKYLEN----NDCEKFYRLIKVDTEVPDNIEKITQL 183 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 G+ + +F + + ++GYN + N + Sbjct: 184 NKGVLANKGIDIKTALLDLRKFLA--DRIVVGYNLPFDI-------NFLNRDFKKYCHYS 234 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N DLL ++ F + + L + I++ N H++ AD A Sbjct: 235 LLNECVDLLSAVKKKNVFLDN-------------YHLSTVLENYNIKNSNPHNSLADAVA 281 Query: 184 TLALVWLIREKKP 196 T+ L+ + + Sbjct: 282 TMELLKKLIKNDN 294 >gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 169 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 26/193 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V D ET G L R + V + + F D A + Sbjct: 1 MSRIVALDTETTGISHRLGHRVIEIGAVEL-IDGQLTGRQ--FHTYLQPQRKVDRGAQRV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + ++ + + + + +N FD + N + Sbjct: 58 HGISDAMLVGKPLFSSKAA----ELLAFLRGSEMVAHNATFDVGFLDNELRLSGIPGTLA 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 R + +WP + KL D+ I + H A Sbjct: 114 QH------------CRITCSLKLARGRWPGQG-----NKLDDVLQRLRIPGNRGLHGALK 156 Query: 180 DVYATLALVWLIR 192 D + ++ +R Sbjct: 157 DAHLLAQVIPHLR 169 >gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304] gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304] Length = 241 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 30/225 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G + + R + G R+ I + + ++GI Sbjct: 44 IIFDTETTG-NFSDQRIIEIGG-LFLRKGVPIGEWQQL---INPGVNITHFSQHLSGIND 98 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + S I F + I N+ FD R S Sbjct: 99 AMIANEPP----ASTVIPWFINSIQNLTIVGYNVNFDINALNEEANRLGMSGISVSN--- 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D++D+ R + S+ L+ +A+ + H A D T Sbjct: 152 --VIDVIDIAR-------------QSLPNSPSYSLEQVAILLNVSDTEKHRALDDAILTW 196 Query: 186 ALVWLIREKKPKLFEYLYD---YRNKNQLRKLIDIQNMTPLVHVS 227 + K + ++ + D VS Sbjct: 197 KCWQKMESMNNKQIILSQEQVTTVSQRNSKIRNDKNKACSFKQVS 241 >gi|254524227|ref|ZP_05136282.1| exonuclease [Stenotrophomonas sp. SKA14] gi|219721818|gb|EED40343.1| exonuclease [Stenotrophomonas sp. SKA14] Length = 188 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 26/204 (12%) Query: 2 TNHFVIYDYETFGRDVALDRP---------AQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 + YD ET G A P Q A V+ K+ S+ KP + Sbjct: 1 MSLIFFYDTETTGL-PAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTI 59 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P+ E I GIT ++A + G+ E+ + + + + + + + FD R R Sbjct: 60 PE-EVTRIHGITNEQAEQCGLDESLVTELVLDMWRLSD--VRIGHVESFDARILRIALKR 116 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 W G ++ + P D F G E Sbjct: 117 YATAQVADEWKAGTAQCTA-----KAAKALMGMTKNPKLIDAHRHF--------LGREFD 163 Query: 173 NAHDAKADVYATLALVWLIREKKP 196 AH A AD+ A + W + + + Sbjct: 164 GAHTAHADMVACREIHWAMADHEN 187 >gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] Length = 231 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 53/197 (26%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + T + P EA + G+ Sbjct: 4 IVLDTETTGFEPNEGDRIVEIGAVEL-LNHVPTGRTYHQYINPKRSM--PKEAFEVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A+ ++ F T + +N FD + Sbjct: 61 DDFLRDKP-FFADIAQAFVDFV---GTDKMIIHNAAFDMKFLNAELGWVNRPLLPMDQA- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L GI++ + H A D Sbjct: 116 ----LDTLAIARRRFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLF 199 + + + F Sbjct: 158 ILAEVYLELIGGRQPDF 174 >gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 827 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 29/203 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + + D E G A+ Q V ++ + +++ + + +T Sbjct: 6 SQKYAVVDLEATGAH-AMAEIIQVGIVIIEND-QIVKTYQT---DVNPHEALTEHIIHLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + ++ ++ I+ S C+ +N++FD + Y+ Sbjct: 61 GITDEQLAKAP-DFSKVAQEIYHLISD---CVFVAHNVKFDANLLAEKLFLEGYE----- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R L+D + F P + + L LA ++ +AH A +D Sbjct: 112 -----LRTPLVDTVELSQVFYPTLEK----------YTLGHLADVLQLDLTDAHTAISDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 YAT L+ ++EK L + L + Sbjct: 157 YATAQLLLKLKEKMESLPKELLE 179 >gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 243 Score = 73.3 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + + + +++ +I E F P +TGI Sbjct: 51 FCVVDIETSGG-INSGQIIEIGALKL-LDGVEIGRFESFVYAPN----VPENISELTGIY 104 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + +N++FD + R + Sbjct: 105 AADLAKAPS----LANVLEKFKLFLGDSVFVAHNVKFDYDFISISLERLGFGMLLN---- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +D+ R R + + L L GI + + H A D A Sbjct: 157 --RRICTIDLAR--------------RTIISQKYGLGTLKELLGISNAH-HRALNDAIAA 199 Query: 185 LALVWLI 191 + Sbjct: 200 AEIFKEC 206 >gi|329945803|ref|ZP_08293490.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386] gi|328528251|gb|EGF55229.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386] Length = 258 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 17/196 (8%) Query: 8 YDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G D DR A V R +R+ + + V A + G+T + Sbjct: 26 FDTETTGVDPGRDRLVTAALVWRAERRADGVRQQSVTTWLADPGVEIPEAASAVHGVTTE 85 Query: 67 KALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ +G AE + T +I +N +D R+ Sbjct: 86 RSRSEGRPVAEVLAEVSDHLVAAMTAGTPVIVFNA-SYDLTLMETELARHGLP--TMRSR 142 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVY 182 G + D + A +L DL G + H A+ DV Sbjct: 143 LGRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVHVDEDLHTAEVDVA 193 Query: 183 ATLALVWLIREKKPKL 198 ATL ++ + P++ Sbjct: 194 ATLDILEALATAHPQI 209 >gi|323126941|gb|ADX24238.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 820 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 100/336 (29%), Gaps = 38/336 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT + + D E A Q V ++ + E +E+ + + Sbjct: 5 MTRKYAVVDLEATNAG-ATAAIIQVGIVIIEGK-EVVETYQT---DINPHEPLSDHIKAL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + ++ ++ I++ S C+ +N++FD + Y+ Sbjct: 60 TGITDAQLAQAPE-FSQVAKTIYELISD---CVFVAHNVKFDANLLAEALFFEGYELLT- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R D +++ + Y + L L+ G+E AH A AD Sbjct: 115 ------PRVDTVELAQIFY-------------PSLEKYTLGHLSAELGLELEEAHTAIAD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT AL + +K L + + L + + R+ L Sbjct: 156 ARATAALFIKLLQKIESLPKECLESLLPYADSLLFETAMVIEQGFNQAKPYDPRTYVHLG 215 Query: 241 APVAWHPRYK---------DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291 + + I L G + QL + + Sbjct: 216 KMLLPKHLKRQSSPYQLSKQFAINMALLGLEERSKQASFAQLIEADYHQRQASFIEAQTG 275 Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327 I + + P+L D + I + + N Sbjct: 276 IGKTYGYLLPLLAQEDQSQIIVSVPTKILQDQLMAN 311 >gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a] gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a] Length = 169 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 54/193 (27%), Gaps = 26/193 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V D ET G L R + V + + F D A + Sbjct: 1 MSRIVALDTETTGISHRLGHRVIEIGAVEL-IDGQLTGRQ--FHTYLQPQRKVDWGAQRV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + ++ + + +F + +N FD + N + Sbjct: 58 HGISDAMLVGKPLFSSKAA-ELLEFLRGSE---MVAHNATFDVGFLDNELRLSGIPGTLA 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179 R + +WP + KL D+ I H A Sbjct: 114 QH------------CRITCSLKLARGRWPGQG-----NKLDDVLQRLRIPSQRGLHGALK 156 Query: 180 DVYATLALVWLIR 192 D + ++ +R Sbjct: 157 DAHLLAQVIPHLR 169 >gi|114319997|ref|YP_741680.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii MLHE-1] gi|114226391|gb|ABI56190.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola ehrlichii MLHE-1] Length = 240 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 12/187 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D V D ++I + E++ + GIT Sbjct: 50 LVALDMETTGLDPDRHAIVSIGLVPFD--LQRIRLPDRRHWLLQPPRPLLSESITLHGIT 107 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + + + + + + + + Sbjct: 108 HSDLANAP-DLSEVLDELLEALAGRQPVV---HYRNIERPFLDTAVRARVGEGLL----- 158 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +++ + S +L D L G+ ++H A D AT Sbjct: 159 -FPVIDTMELEARRHRQSGWSRLKRFLGQNPVPIRLHDSRLRYGLPAYHSHHAVNDALAT 217 Query: 185 LALVWLI 191 L Sbjct: 218 AELFQAQ 224 >gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008] gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008] Length = 862 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D A DR Q A +R+D + +E+ E F +P ++ + G + Sbjct: 495 VVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERF---INPG-VPVGQSEEVHGFSD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G A + +F II +N+ +D N R+ Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL LA I H H+A D+ AT Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASKFPIHHEPTHNAMDDILATA 649 Query: 186 ALVWLIREKK 195 L+ ++ Sbjct: 650 QLLIYAVKEN 659 >gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] Length = 862 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 25/186 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSKEVHGFSD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G A + +F II +N+ +D N R+ Sbjct: 551 AYLQEHGEDPATVLKAFKEF---SKDAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL LA I H H+A D+ AT Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASKFPIHHEPTHNAMDDILATA 649 Query: 186 ALVWLI 191 L+ Sbjct: 650 QLLIYA 655 >gi|126342108|ref|XP_001377513.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica] Length = 241 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 63/208 (30%), Gaps = 31/208 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A A+ + + D ++ + C Sbjct: 8 ETFVFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMC-- 65 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFS--VPNTCIIGYNNIRFDD 103 + P+A ITG++ Q + + R + +F C++ +N +D Sbjct: 66 -PEQNFTPKASEITGLSNQNLADNHKAGFDGAVIRALWEFLKRQKSPICLVAHNGFDYDF 124 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 R R D G D L +R G S+ L +L Sbjct: 125 PLLRTELQRLGADL-----PGGTVCLDTLPALRG---LDKAHHHSTRASHGKKSYSLGNL 176 Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190 E AH A+ DVYA + + Sbjct: 177 YRRYFDDEPQAAHSAEGDVYALVMVFLH 204 >gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 145 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 12/118 (10%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GI + L V F+ + +F + +N FD + F D Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIP 122 >gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] Length = 190 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 12/195 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + AQ + + D + ++ A I G+T Sbjct: 2 YVFLDTETTGLHP--GQIAQLSYLVTDEDLNLKKVFNQYYSV----DRMSRSAAKIHGLT 55 Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + L +G+ + + II +NI FD + + F R + Sbjct: 56 MEILDELSNGMTFEDTVDEVRDDLEDS---IIIGHNISFDIRFLKTEFERLGPEYVPKDK 112 Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + P ++ + L+ A G V HDA+ D Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKEAYGCSDVGFHDARYDT 172 Query: 182 YATLALVWLIREKKP 196 Sbjct: 173 GILYLCYKKGVLLDH 187 >gi|86146291|ref|ZP_01064616.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|85836002|gb|EAQ54135.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] Length = 238 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 12/192 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G + D V +I + + ++V I GI Sbjct: 47 TFLAVDFETTGLNPNKDGIITIGLVPF--TLNRIYLRQAKHWTLRPKQKLEEDSVVIHGI 104 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E I + S+ + + D+ + R Sbjct: 105 THNDIIDAP-DLSEVLDEILE--SMGGHIPVVHYRRIERDFLDNALKVRLGEGI------ 155 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ I G+ + S +L + H A D A Sbjct: 156 -EFPVLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIA 214 Query: 184 TLALVWLIREKK 195 T L+ Sbjct: 215 TAELLQAQIAHH 226 >gi|84393001|ref|ZP_00991768.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376355|gb|EAP93236.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 238 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 12/192 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G + D V +I + + ++V I GI Sbjct: 47 TFLAVDFETTGLNPNKDGIITIGLVPF--TLNRIYLRQAKHWTLRPKQKLEEDSVVIHGI 104 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E I + + + + D+ + R Sbjct: 105 THNDIIDAP-DLSEVLDEILESLA--GHIPVVHYRRIERDFLDNALKVRLGEGI------ 155 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ I G+ + S +L + H A D A Sbjct: 156 -EFPVLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIA 214 Query: 184 TLALVWLIREKK 195 T L+ Sbjct: 215 TAELLQAQIAHH 226 >gi|218709810|ref|YP_002417431.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|218322829|emb|CAV19006.1| DNA polymerase III polC-type [Vibrio splendidus LGP32] Length = 238 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 12/192 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G + D V +I + + ++V I GI Sbjct: 47 TFLAVDFETTGLNPNKDGIITIGLVPF--TLNRIYLRQAKHWTLRPKQKLEEDSVVIHGI 104 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E I + S+ + + D+ + R Sbjct: 105 THNDIIDAP-DLSEVLDEILE--SMGGHIPVVHYRRIERDFLDNALKVRLGEGI------ 155 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ I G+ + S +L + H A D A Sbjct: 156 -EFPVLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIA 214 Query: 184 TLALVWLIREKK 195 T L+ Sbjct: 215 TAELLQAQIAHH 226 >gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori SouthAfrica7] Length = 287 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 61/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + I E K DY+ D +TGI Sbjct: 73 FSFIDLETTGSCPIKHEILEIGAVQV-SGGKIINRFETLVKVKSVPDYISD-----LTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L E + + F + +N FD + F + Sbjct: 127 AYEDTLNAP-SVYEALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD+ R + L L G +H A AD A Sbjct: 180 ---LKLCTLDLSRRAILSM--------------RYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPNYVKTTMDLIDFSKCANALIKRPPR 260 >gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399] gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399] Length = 179 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 25/194 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +++D ET G D A VD + + + P+A + Sbjct: 1 MLEKILVFDTETTGFRSD-DEVLTLA--VVDGAGKTVVDGMYAPVSKKEW----PDAEKV 53 Query: 61 TGITPQKALR-DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I+P ++ + + F+ P T ++GYN R Sbjct: 54 NRISPAMVADCAPILTHRA--ELERLFNDPETLLVGYNIEFDIRLL--------GQSGIR 103 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + N + MR + G +W + A ++ AH A A Sbjct: 104 ITNPNRHDVMLAFSEMRKVPDARRGGYRWWKLTECAEYYR-------YNWGTTEAHGALA 156 Query: 180 DVYATLALVWLIRE 193 D ATL +R+ Sbjct: 157 DTLATLYCYDQMRQ 170 >gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] Length = 271 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 32/190 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F ++D ET G D ++ + A +R D + +++ + K + V T Sbjct: 11 KEIFTVFDLETTGLDYKNEQVVEIAAIRTDLE-QELGRMHIL-VKLNEGKKLPDFLVDNT 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + + G+VE + + F I+ + FD Sbjct: 69 DLRDYMLVN-GMVEHQALINLMAFM---GNSIVVAHYAPFD------------------- 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + L S L A G++ AH A D+ Sbjct: 106 -------FAYLFKALIAPELFLCTRSIERLLTPDKSASLAPTAERRGVKLEGAHRAMNDI 158 Query: 182 YATLALVWLI 191 AT+ ++ Sbjct: 159 EATIGVLKSQ 168 >gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM 15829] Length = 297 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 26/191 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FVI D ET G + D+ + +R+ ++++ + + D P +TG Sbjct: 128 KKFVILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKR--DSLNLSPAITQLTG 183 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + GV + QF ++GYN FD + N Sbjct: 184 LTDIELANRGVNPNLALNGLKQFIGHLP--VLGYNI-AFDMRFINNELRSM------NEE 234 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D++ ++ F S+ L ++ GI H A D Sbjct: 235 LLDNREIDVMRFIKKEKMFLE-------------SYALDNVLKVYGISATVPHRALGDAK 281 Query: 183 ATLALVWLIRE 193 L + + Sbjct: 282 LIAKLALKVNK 292 >gi|254226650|ref|ZP_04920229.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51] gi|125620819|gb|EAZ49174.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51] Length = 236 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEEESIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQR-ITRQPLPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178 str. F0338] gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178 str. F0338] Length = 238 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 20/198 (10%) Query: 8 YDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G DR A V RV+ + +++ + +A + GIT + Sbjct: 11 FDTETTGTSPFKDRLVTAALVLRVEGRDDQVATWLA-----DPGVEIPEQASAVHGITTE 65 Query: 67 KALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A G E + + + N +D R+ ++ Sbjct: 66 YAREHGRPVEEVLEEVAGCLTEHWFRGFPVVAFNASYDITLVDRELSRHGLATFA----- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYA 183 R D ++ P + L D+A G+E +AH A+ DV Sbjct: 121 --ERLDGEPML----VVDPLVLDRKLDRFRKGKKTLTDMAPVYGVEASPDAHTAEVDVAM 174 Query: 184 TLALVWLIREKKPKLFEY 201 TL ++ I K P+L ++ Sbjct: 175 TLNVLAGIARKFPELEDH 192 >gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266] gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 56/257 (21%), Gaps = 45/257 (17%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A V +D + A + GIT + Sbjct: 16 FDLETTSANPFEARIVTSALVHIDSGGAHPQEFLA-----DPGVPIPEAATKVHGITTEY 70 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A G A+ +I YN + Sbjct: 71 AREHGSPHADVLAETIAAIRKAWTDGYTLIVYNASYDLTVLHSLEPGFLITGPVYDPY-- 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D + Y L L + NAH+A +D A Sbjct: 129 ------VMDKLLDPY--------------RRGKRTLTALCEEYQVRLENAHEATSDALAA 168 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + W K + I Q M L+ + N + Sbjct: 169 ARIAWKQA---------------KKRFASQISPQTMEQLMEFQAVGYYRSQNDFKKYLLG 213 Query: 245 WHPRYKDSVIGCNLSGD 261 D L Sbjct: 214 RGKDASDVNTAWPLQTP 230 >gi|123965921|ref|YP_001011002.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9515] gi|123200287|gb|ABM71895.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9515] Length = 270 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 29/191 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D ET G D D + + + + S F + EA + G Sbjct: 47 EKILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFL-----FPVSSNEAEHVNG 101 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + E + + +I +N+ FD + Sbjct: 102 IS-AEVSNIKQPWEEGLNFFLKLVDCAD--LIVAHNVEFDKKWFGKGR------------ 146 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + S + I W + + + DLAL+ I + H A +D + Sbjct: 147 ---------LPNLEKNWICSLEDINWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCF 197 Query: 183 ATLALVWLIRE 193 + Sbjct: 198 YISEVFKKCEN 208 >gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] Length = 157 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 29/180 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +V+ D E + + Q V + E I D +TG Sbjct: 6 DRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIINQYAT---DVNPHEPLDSHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T ++ ++ + +I + I +N++FD + + Sbjct: 61 LTDRRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + R D +++ + +Y + L L GIE +AH A +D Sbjct: 110 ELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHTALSDAQ 156 >gi|96979801|ref|YP_611004.1| v-trex [Antheraea pernyi nucleopolyhedrovirus] gi|94983334|gb|ABF50274.1| v-trex [Antheraea pernyi nucleopolyhedrovirus] gi|146229697|gb|ABQ12262.1| EXO III v-trex [Antheraea pernyi nucleopolyhedrovirus] Length = 230 Score = 73.3 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 16/211 (7%) Query: 3 NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPE 56 + D ET G + + + V R+ E + S + Sbjct: 5 KTYAFLDLETTGLPKLQNNQTQITELSLQCVTRE-ELLGSARVCNKLTLCFEPTVPVSDQ 63 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A +T + + + + I F + P C++ YN FD N Sbjct: 64 ASVLTQLNAENLRGQPRFDGRAAALIESFLALLSPPVCLVAYNGFAFDFPILHKHLKDNG 123 Query: 115 Y-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 + D+Y + + + W S+KL DL + Sbjct: 124 FAGAVQCADAYHGLFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLVDLYKKH 183 Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198 V H A+ D + L ++ + Sbjct: 184 VGGSVEGHRAENDCAMMMRLAQKYADEFVEW 214 >gi|262190277|ref|ZP_06048547.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|262033843|gb|EEY52313.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] Length = 233 Score = 73.3 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 43 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEEESIVFHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 210 TAELFQAQCAHHLP 223 >gi|256377528|ref|YP_003101188.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255921831|gb|ACU37342.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 262 Score = 73.3 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 21/196 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK--PADDYLPDPEAVFITG 62 + D ET + DR A V V + +V A I G Sbjct: 15 LLALDLETTDVEPRRDRIVT-ASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHG 73 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ ++A +G E + + + + N FD R+ + Sbjct: 74 ISTEQARAEGRPVGEVVAEVEALLAELWTASTPLCAFNAPFDLTMLDAELLRH----HGR 129 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S D L V RA+ L + +G+ AH + D Sbjct: 130 SLRVSGPVVDPLCVDRALDPRRV------------GKRTLGAVCEHHGVRLEGAHTSAGD 177 Query: 181 VYATLALVWLIREKKP 196 A L W + P Sbjct: 178 ALAAARLAWKLARVHP 193 >gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8] gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1] gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1] Length = 184 Score = 73.3 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 31/197 (15%) Query: 5 FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 F ++D ET G R +FAGV D E I F C + + Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITD--GETILDEVEFIC--NPGIVIEEII 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITG+ + ++ + +++ FFS + I +N+ FD + R Sbjct: 59 TKITGLKNEDLIKHP-SFLDQRQKVRDFFSKADANI--AHNLPFDKFMLTCDLARGKLGL 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 ++ + + + + + +LQ L +V H A Sbjct: 116 EEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158 Query: 178 KADVYATLALVWLIREK 194 DV + + Sbjct: 159 LDDVRLLHEVCKRMGVY 175 >gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] Length = 225 Score = 73.3 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 64/208 (30%), Gaps = 26/208 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + + T F +P + + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 IDPANPLRGAVSEYEALHEIFKAVRKGIKDLNCNRGIIVAHNATFDHSFLMAAAERCGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + +A + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAAEIPFDASQAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A D T L + + ++ + Sbjct: 183 ALYDTERTAQLFCELVNRWKRMGGWPLA 210 >gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LactinV 01V1-a] gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LactinV 01V1-a] Length = 275 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 29/180 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T +VI D ET G D + + +++ + E+ + C + +T Sbjct: 106 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKNIEE------YSCIVKQNITLPNAIKILT 159 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + G E+ + + F + ++GYN FD + RN Sbjct: 160 GISDAELKN-GKDESVAIKELCTFI--GDKALVGYNV-NFDIRFINEALKRNGQ------ 209 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N +D++ ++ F ++KL + GI H A DV Sbjct: 210 SQLTNKVYDVMKYVKRDKMFL-------------KNYKLDTVLSEYGINIKVPHRAIEDV 256 >gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] Length = 272 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 31/218 (14%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D ET G + + V+ + E ++S P +T Sbjct: 81 QTFCFVDIETNGGTPKKGFQIIELGAVKY-KNGEVLDSFNSLVFA----KEIPPYIQEVT 135 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITP +E + + F + ++I+FD + + F + Sbjct: 136 KITPAMLETAPRIE----KVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKY-------- 183 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + D + + + + L L I+ N H A D Sbjct: 184 ---------SLGKLLNRKLCTIDLAKRTIKSEK---YGLSSLKELLNIDIENHHRAYYDA 231 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 T + ++ + + D N ++ +I + Sbjct: 232 LTTQIVFEKCLKNIDTNKIKTVEDLINFSKSDSIIKNE 269 >gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D+ I+ T F +P + +P A+ TG Sbjct: 20 VVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLEPSALEFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + N R+ Sbjct: 80 IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D I L + GI A Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVTAGIPFDGKQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + K Sbjct: 181 HGALYDTNRTALLFCELVNK 200 >gi|241662069|ref|YP_002980429.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D] gi|240864096|gb|ACS61757.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] Length = 216 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 50/183 (27%), Gaps = 14/183 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G +V D VR+ +P + PE++ + + Sbjct: 39 VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSERMELLIRPQGEMR--PESICVHRLRN 96 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + GV + + F + ++GY +R + + + Sbjct: 97 RDL-DSGVSIEQAIHALLHFI--GSRPLVGYYLEFDVAMLNRVVVSMLGIGLPQPKIEVS 153 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + + D + + + +AHDA D Sbjct: 154 ALYYD---------YRFQQLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAA 204 Query: 186 ALV 188 Sbjct: 205 LAF 207 >gi|119944727|ref|YP_942407.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37] gi|119863331|gb|ABM02808.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 238 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 12/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D + V + Q + ++ P D+ ++ I GIT Sbjct: 48 FVALDFETTGLDSQQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNL--QENSIIIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + Q ++ + R + + + + Sbjct: 106 HSDLQDAP----DILRILEQLLDELAGKVVVVHYRRIERDFLDHTLRILIDEGIL----- 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + G+ S +L D + HDA D AT Sbjct: 157 -FPVIDTMQIEANLQRRKSQGLFNFFNKKRPESIRLADSRARYNLPVYPPHDALTDAIAT 215 Query: 185 LALVWLIREKK 195 L+ + Sbjct: 216 AELLQAQIKYH 226 >gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces clavuligerus ATCC 27064] gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces clavuligerus ATCC 27064] Length = 287 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 7/109 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D + P A + G+T Sbjct: 58 FDTETTGVDVENDRIVAAAVVVQDMAG---GRPRITRWLINPGIPVPPGATEVHGLTDDH 114 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113 R+G A + + + ++ N FD R+ Sbjct: 115 VQRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAP-FDLTILDRELRRH 162 >gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 241 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 7/109 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D + P A + G+T Sbjct: 12 FDTETTGVDVENDRIVAAAVVVQDMAG---GRPRITRWLINPGIPVPPGATEVHGLTDDH 68 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113 R+G A + + + ++ N FD R+ Sbjct: 69 VQRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAP-FDLTILDRELRRH 116 >gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] Length = 243 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 56/211 (26%), Gaps = 34/211 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + E F + EA + GI Sbjct: 4 IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPERSMPQEAFGVHGIG 60 Query: 65 PQKALRDGVVE---------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 P E F++ F + +N FD + R Sbjct: 61 PDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFVRDSRMVIHNASFDMKFLNFELDRMGL 120 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + D L + R + SP L L I++ N Sbjct: 121 RTLPMEQA-----LDTLAMARKRFPGSPAT--------------LDALCRRFQIDNSNRT 161 Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYD 204 H A D + + + F + Sbjct: 162 LHGALLDSEILADVYLELSGGRQPDFGLSTN 192 >gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] Length = 229 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 26/199 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + A + K+ + F + +A I GI+ Sbjct: 7 IILDTETTGLDPRQGHRIVEIAAI---EMMNKVLTGRNFHFYINPERDIPFDAYRIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + + +N FD + + + Sbjct: 64 GEFLKDKPLFHT-IADDFLEFIADSK---LVIHNAPFDIKFLNHEL--SLLKRAEIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 ++ D L + R+++ + + L L +++ H A D Sbjct: 118 LSNAIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEY 201 + + + F+ Sbjct: 164 LLAEVYVELTGGRQSSFKM 182 >gi|316985472|gb|EFV64419.1| exonuclease family protein [Neisseria meningitidis H44/76] gi|325139523|gb|EGC62063.1| oligoribonuclease [Neisseria meningitidis CU385] gi|325143758|gb|EGC66075.1| oligoribonuclease [Neisseria meningitidis M01-240013] Length = 203 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +DD L D Sbjct: 20 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTA 79 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 80 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 139 Query: 115 YDSYRW 120 + Sbjct: 140 NYFHYR 145 >gi|154247607|ref|YP_001418565.1| exonuclease RNase T and DNA polymerase III [Xanthobacter autotrophicus Py2] gi|154161692|gb|ABS68908.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter autotrophicus Py2] Length = 200 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 18/205 (8%) Query: 5 FVIYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA--DDYLPD 54 + +D ET G A Q A + I F P D Sbjct: 2 ILFWDTETTGFFDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGF-SFIIDPGIGDGINIP 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A + GIT ++A++ GV + + ++ +N +FD + R+ Sbjct: 61 ERAAAVHGITNERAVQFGVSTEFALSAFTHLYQRAD--MVCAHNAKFDKGVTETAISRH- 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVN 173 Y + ++ I P + + KL++ + G + Sbjct: 118 ---YGRVMPLRKPVFCTMESATPIINLPPTDRMRAAGFNKPKPPKLEECIRHFFGEDLDG 174 Query: 174 AHDAKADVYATLALVWLIREKKPKL 198 AHDA DV A + + ++ + Sbjct: 175 AHDAMVDVAACRRVYFHLKSMEADN 199 >gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gordonii str. Challis substr. CH1] gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus gordonii str. Challis substr. CH1] Length = 824 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 52/383 (13%), Positives = 108/383 (28%), Gaps = 39/383 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + I D E G + + Q V + E E+ + + +TG+ Sbjct: 7 KYAIVDLEATGTG-STAKIIQVGIVIL-EDGEIKETYQT---DINPHEALEEHIKQLTGL 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + Q+ + ++ +R I++ + +N++FD + +D Sbjct: 62 SDQRLSQAP-DFSQVAREIYELIED---AVFVAHNVKFDANLLAESLFWEGFDLLS---- 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D +++ + ++ + L L I AH A +D A Sbjct: 114 ---PRVDTVELAQVVFPTYE-------------KYGLSSLCELLEIPLEQAHTAISDAMA 157 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L I+EK L + L + L + ++ L R+ L Sbjct: 158 TALLFLKIQEKIQSLPKPLLERLL--VLSDSLIYESRLVLEDCFEKMPDGRAGDWLDCHG 215 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303 + + LS D L ++ ++ + P+ P Sbjct: 216 IYLKKQAKLGKERCLSSDFAKNISLLGLEERPEQQKFASLIEEAMKNPL--------PNF 267 Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363 + + + C E + + L+D+ + Q L Sbjct: 268 LQAQAGLGKTYGYLLPLLAHCQEKIVVSVPTKILQDQIATGEGRAIEEVFQVAFHSLKSP 327 Query: 364 FFADVDRQIMDRILRTAPEQLST 386 + R +L Sbjct: 328 KSYIKLDAFYQSLERLDDNRLLN 350 >gi|323497526|ref|ZP_08102544.1| putative exonuclease [Vibrio sinaloensis DSM 21326] gi|323317609|gb|EGA70602.1| putative exonuclease [Vibrio sinaloensis DSM 21326] Length = 238 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 19/184 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G D D V + I+ + +++ PE I IT Sbjct: 51 YLVLDLETTGLDAESDLILSMGWVEISNG--VIDLSTAQHFYLSNESQIKPETAVINHIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ G+ + + F V ++ ++ ++ + + + + Sbjct: 109 PQMLED-GISIHDAM---NALFEVAQGKVLVAHSCSVENSFIQR-------------YLS 151 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + + +M + + L + H+A D AT Sbjct: 152 YRFQINAVPLMWLDTLCIEKKLARAINNHQDLDVSLGATRERYQLPEYIEHNALMDAVAT 211 Query: 185 LALV 188 L+ Sbjct: 212 AELL 215 >gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] Length = 240 Score = 72.9 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 27/193 (13%) Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R +FAG+ + + + P D EA + GIT Sbjct: 7 IILDTETTGFYYDRDDRLIEFAGLEM-IDRRLTGNYLHLYVHPERD--IPEEAAKVHGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE ++I F + T ++ +N FD + F R S Sbjct: 64 LDQLEGKPK-FAEIGQQIADFIA--GTELVIHNAP-FDVGFLNAEFRRAGLPSVEE---L 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + RA+Y + L L ++ H A D Sbjct: 117 TANVVDTLVMARAMYPGQKN--------------SLDALCTRLEVDRSKRVFHGALIDCE 162 Query: 183 ATLALVWLIREKK 195 + + + Sbjct: 163 LLSEVYLGMTRSQ 175 >gi|322411431|gb|EFY02339.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 820 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 104/336 (30%), Gaps = 38/336 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT + + D E A Q V ++ + E +E+ + + Sbjct: 5 MTRKYAVVDLEATNAG-ATAAIIQVGIVIIEGK-EVVETYQT---DINPHEPLSDHIKDL 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + ++ ++ I++ S C+ +N++FD + Y+ Sbjct: 60 TGITDAQLAQAPE-FSQVAKTIYELISD---CVFVAHNVKFDANLLAEALFFEGYELLT- 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R D +++ + Y + L L+ G+E AH A AD Sbjct: 115 ------PRVDTVELAQIFY-------------PSLEKYTLGHLSAELGLELEEAHTAIAD 155 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 AT AL + +K L + + L + + R+ L Sbjct: 156 ARATAALFIKLLQKIDSLPKECLESLLPYADSLLFETAMVIEQGFNQAKSYDPRTYVHLG 215 Query: 241 APVAW-HPRYK--------DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291 + HP+ + I L G + QL + + Sbjct: 216 KMLLPKHPKGQSSPYQLSKQFAINMALLGLEERSKQARFAQLIEADYHQRQASFIEAQTG 275 Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327 I + + P+L D+ + I + + N Sbjct: 276 IGKTYGYLLPLLAQEDHNQIIVSVPTKILQDQLMAN 311 >gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Eubacterium saburreum DSM 3986] gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Eubacterium saburreum DSM 3986] Length = 299 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 27/197 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FVI D ET G D + + ++ + + + LP V +T Sbjct: 127 SKDFVIVDIETDGLDNEKNVIIEVGAIKSVSG--VLSEFQSLVNY--EGTLP-KHIVSLT 181 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT +DG + F + IIGYN FD + ++ ++ Sbjct: 182 GITTDMLKKDGSDIVVVLKDFVDFLGDLD--IIGYNIG-FDIDFINIALLKSGLENL--- 235 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N R+DL+ ++ F + +KLQ + G+ H A D Sbjct: 236 ---NNKRYDLMRFVKNEKLFLEN-------------YKLQTVIKEYGVGDKVPHRALEDA 279 Query: 182 YATLALVWLIREKKPKL 198 L + + + Sbjct: 280 KMIYKLAMKVNKFRDLY 296 >gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018] gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018] Length = 272 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 31/218 (14%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D ET G + + V+ + E ++S P +T Sbjct: 81 QTFCFVDIETNGGTPKKGFQIIELGAVKY-KNGEVLDSFNSLVFA----KEIPPYIQEVT 135 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITP +E + + F + ++I+FD + + F + Sbjct: 136 KITPAMLETAPRIE----KVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKY-------- 183 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + D + + + + L L I+ N H A D Sbjct: 184 ---------SLGKLLNRKLCTIDLAKRTIKSEK---YGLSSLKELLNIDIENHHRAYYDA 231 Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 T + ++ + + D N ++ +I + Sbjct: 232 LTTQIVFEKCLKNIDTNKIKTVEDLINFSKSDSIIKNE 269 >gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC 23769] gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC 23769] Length = 298 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 37/187 (19%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61 ++ D ET G D D + A V E I + KPA E +T Sbjct: 42 ILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKPA--KPISSEVTKLT 99 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + E + + T ++ +N FD + + Sbjct: 100 GIDNAMVEGKAINPDEVA-------AFAGTSLVVAHNAAFDRRFLERFCH---------- 142 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 A ++ + D+G S KL LA+++G + H A D Sbjct: 143 -------------AFAGNPWACSMSEVKWFDEGFESSKLALLAMSSGFYYDK-HRAVHDC 188 Query: 182 YATLALV 188 YATL L+ Sbjct: 189 YATLELL 195 >gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 246 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 82/269 (30%), Gaps = 29/269 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++++D ET G + DR Q + VD + + E + EA+ + Sbjct: 1 MAKYILFDTETTGNN-EEDRIIQIGAMIVDAKGQV-EVFDELCSTVLP---IKVEAMAVH 55 Query: 62 GITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP G+ + F + + + N + +N+ FD + + Sbjct: 56 GITPNLIEGKGLFTDTNFYKTLLSLNNQEN--YLIAHNMPFDMGMLQKEGFIPDLKIIDT 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + + + + + AHDA D Sbjct: 114 LRVAKHLIPNSPSKALQYLRYDLELYKNEQAEADKYNI------------TIKAHDAIGD 161 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 V L+ + + + + +I ++ +T F + I Sbjct: 162 VLVMKLLLSKLVVLVKENYP---------DVNPMIKMEELTSTPIFIETFTFGKYKDRKI 212 Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLD 269 A V + + N+ D + LD Sbjct: 213 AEVCNEDMGYINWMKKNMDLDEDMKYTLD 241 >gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)] Length = 244 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 6/111 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R V R E + E +AV + GI+ ++ Sbjct: 11 FDLETTGTDPREARIVT-GAVIEVRGSEPLGRREWLA---DPGVEIPADAVAVHGISNER 66 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A R+G + + I + N FD R+ Sbjct: 67 AAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALP 117 >gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16] Length = 287 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFSIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141] Length = 307 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 30/196 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V D ET + V+ + +++ + D +FI Sbjct: 1 MSYSYVALDVET--ANDFRGSVCSIGLVKF-KDGNIVDTFYTL---INPEEEFDDFNIFI 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP+ L E + I F I+ + +FD Sbjct: 55 HGITPEDVLDSP-TFPEVRKSIVDFI---GLDIVVAHFAQFDMGA---------LKDVYQ 101 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ + + R G ++KL+ LA IE + H+A +D Sbjct: 102 KYELDFDNIEYICSYRLAKV----------ALPGQLNYKLKRLAKNLNIELDH-HNALSD 150 Query: 181 VYATLALVWLIREKKP 196 A+ ++ + Sbjct: 151 ARASGLILEYLLSTNS 166 >gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans DS-1] gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans DS-1] Length = 228 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 29/195 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G R + + + F + A I G++ Sbjct: 4 IVLDTETTGISPNDGHRLVEIGCLEL-FNHVVTGKY--FHAYIDPERDMPEGAFRIHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 AE + F + +N FD + R + S Sbjct: 61 SDFLRGKPK-FAEVADDFLAFI---GEDPLVIHNAAFDMGFINAELKRIGRPALPVSRAT 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D LD+ R + + + L L G+++ H A D Sbjct: 117 -----DTLDIARRKFPGAQN--------------SLDALCRRFGVDNSGRTKHGALLDSE 157 Query: 183 ATLALVWLIREKKPK 197 + + + Sbjct: 158 LLAEVYLELMGGRQP 172 >gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827] gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827] Length = 234 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 56/209 (26%), Gaps = 24/209 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T + D ET G D DR V + + + + D+ E I Sbjct: 49 TQQILSIDLETTGLDPEKDRILSIGMV-TIADSKILLKSAQHY-YVNDNEPVKAETAVIN 106 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ITP++ GV I F I + + + Sbjct: 107 HITPEQLSD-GVSLPHA---IASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLW-- 160 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D L++ + ++ F L L + +AH+A +D Sbjct: 161 -------FDTLNI---------EKTLLSHKNINRNDFSLSALRSRYQLPDYDAHNALSDA 204 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQ 210 AT L + + K Sbjct: 205 IATAELFLAQSKVIYPSQHPVIKQLYKRS 233 >gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] Length = 259 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 7/138 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V R E + S +A I GI+ ++ Sbjct: 30 FDLETTGTDPLDARIVT-AAVVELRAGEPVRSH---GWMADPGISIPAQASAIHGISNER 85 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G E + I + + N FD R+ S +G Sbjct: 86 ASAEGRPAREVAEEIADTLTAHWRQGVPVVAYNAAFDLTLLAAELQRHGLPSLG-ERLDG 144 Query: 126 NSRWDLLDVMRAIYAFSP 143 ++D A Sbjct: 145 RPIGPVIDPYTIDRAVDR 162 >gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] Length = 476 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 28/174 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62 +FV +D ET + Q V+ ES+E + C P + E + I G Sbjct: 123 NFVGFDVET--ANDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIHG 178 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP+ F+ + + + +N +FD + D + Sbjct: 179 ITPEMVADQPR----FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIY 234 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 L + R + KL +A G E N HD Sbjct: 235 ------GCSLTLARNEKL-------------QVENHKLPTVASHLGFELKNHHD 269 >gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Corynebacterium glutamicum ATCC 13032] Length = 381 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 28/174 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62 +FV +D ET + Q V+ ES+E + C P + E + I G Sbjct: 28 NFVGFDVET--ANDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIHG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP+ F+ + + + +N +FD + D + Sbjct: 84 ITPEMVADQPR----FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIY 139 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 L + R + KL +A G E N HD Sbjct: 140 ------GCSLTLARNEKL-------------QVENHKLPTVASHLGFELKNHHD 174 >gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 169 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 26/193 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + V D ET G L R + V + + F D A + Sbjct: 1 MSRIVALDTETTGISHRLGHRVIEIGAVEL-IDGQLTGRQ--FHTYLQPQRKVDWGAQRV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + ++ + + F + +N FD + N Sbjct: 58 HGISDAMLVGKPLFSSKAA-ELLDFLRGSE---MVAHNATFDVGFLDNELRLAGIPGTLA 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 R + +WP + KL D+ I + H A Sbjct: 114 QH------------CRITCSLKLARGRWPGQG-----NKLDDVLQRLRIPGNRGLHGALK 156 Query: 180 DVYATLALVWLIR 192 D + ++ +R Sbjct: 157 DAHLLAQVIPHLR 169 >gi|322372929|ref|ZP_08047465.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150] gi|321277971|gb|EFX55040.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150] Length = 301 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 27/196 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V+ D ET G D + + V+ +++E ++ LP +TG Sbjct: 129 KPYVVIDIETDGLDEKKNTIIEIGAVKF--NGQQVEEFNSLIKY--EEKLPTA-ISKLTG 183 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ ++G E F + NI FD + N + Sbjct: 184 ISKSLLDQEGRDLEEVLSEFLLFI---GKLTLVGYNIHFDIQFINNKLNKFGLPILIN-- 238 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D++ ++ F + ++LQ A GIE H A D Sbjct: 239 ----KTHDIMRYVKDEKLFLDN-------------YQLQTALKAYGIEDQVPHRALKDAR 281 Query: 183 ATLALVWLIREKKPKL 198 L + + ++ Sbjct: 282 LIYHLSTKVNKFLARM 297 >gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16] gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16] Length = 258 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 72/236 (30%), Gaps = 24/236 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G V DR A + +R + +A + G+T + Sbjct: 37 FDTETTGVWVRRDRIATASLIR-----RVGGEDTAYNWVINPGVPMPVKASEVNGLTDEY 91 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + G A I + + + N+ FD R + R G Sbjct: 92 LEKHGEQPAVALAEIASELAAAMSSGVPVVGFNVAFDFEILEAELARYELPTLRA--RLG 149 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184 ++D + KL + A G++ A H A +DV AT Sbjct: 150 GRIAPVIDPLVLDRTL---------DRYRRGKRKLATVCEAYGLDGNRAFHQADSDVTAT 200 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 L L+ + E+ L ++L + T + + +R + + Sbjct: 201 LDLLGAMVERYESLRGMEL-----DELHDFQAAAHRTWAENFNEYMARTRPDYRPV 251 >gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1] gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1] Length = 243 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 28/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G D R + V V R+ + F D D A + G+ Sbjct: 4 ILLDTETTGMDPTEGHRIIEIGCVELVRRRL----TGNNFHEYLNPDRAVDEGAENVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + A+ +RR + I +N FD + R + Sbjct: 60 SNRFLADKPR-FADIARRFVDYVQDAELII---HNAPFDVGFIDAELARLG--PAWGQLE 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181 + + D L + R ++ L L ++ H A D Sbjct: 114 DYCTITDSLQMARRMHPGQRC--------------SLDALCKRYSVDGSRRELHGALLDS 159 Query: 182 YATLALVWLIREKKPK 197 + + + K Sbjct: 160 ELLAEVYLAMTGGQGK 175 >gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] Length = 901 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 19/263 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 I+D ET G DV D Q A V++ + S + + +D +P+ + I Sbjct: 507 ITIFDTETTGLDVFSDDILQIAAVQLKNGAVVLGSAMSIYLE-SDKEIPEMLGDIVNPII 565 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + + +R + ++ +N FD + N R + N Sbjct: 566 EERRHHQLISRQDALQRFVDY---AQGTVLLGHNADFDIHILTNNLLRELPECPLPENLN 622 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + G +KL+ L +E N+H A ADV AT Sbjct: 623 N---------------YLDSLLLIRLLRPGLRQYKLKYLLEVLHLEGENSHLADADVNAT 667 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 AL + ++ + ++++ + L H +N + Sbjct: 668 RALTIFCYDHAREMVAEQQSFITHKRVQERVVTLRNNYLSHFYHTADCLWTNDDNKDLLV 727 Query: 245 WHPRYKDSVIGCNLSGDMRVFQD 267 RY S+ + + Sbjct: 728 EEMRYLYSIWVEEHLIEPLPMVE 750 >gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 179 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 23/193 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +++D ET G D A VD + + P+A I Sbjct: 1 MLEKILVFDTETTGFRSD-DEVLTLA--VVDGAGATVVDGMYAPVRKNAW----PDAEKI 53 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+P + + A+ + + + F+ P T ++GYN +++ R Sbjct: 54 NRISPAMVVNCPPILAQQA-ELERMFNDPETLLVGYNIEFDIRLLAQSG--------IRI 104 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + R + G +W + A ++ AH A AD Sbjct: 105 QNPNRHDVMLAFSEFRKVPDARRGGYRWWKLAECADYYR-------YDWGTTKAHGALAD 157 Query: 181 VYATLALVWLIRE 193 ATL ++E Sbjct: 158 TLATLFCYQKMKE 170 >gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 244 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153] Length = 244 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE 2594] gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 244 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|212636083|ref|YP_002312608.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3] gi|212557567|gb|ACJ30021.1| Exonuclease [Shewanella piezotolerans WP3] Length = 238 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D + V +I + + +++ I GIT Sbjct: 48 FVALDFETTGLDANENSIISIGLVPF--TLRRIACRQAKHWFITPEDKLKEDSIIIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + Q I+ + R + R+F+D+ S N Sbjct: 106 HSDLKGAP----DLLRILEQLLDELAGKIVVVHYRRIE---------RDFFDAALRSLIN 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQW---PSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++D M+ + + S +L + + HDA D Sbjct: 153 EGIVFPVVDTMQIEADIQQAKPKRFLDWFKKSRPESIRLANSRTRYNLPTYPPHDALTDA 212 Query: 182 YATLALVWLIREKK 195 AT L+ Sbjct: 213 IATAELLQAQIYHH 226 >gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1417 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%) Query: 2 TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + V++D E+ G + A D + A D F + E + Sbjct: 770 MRTYRLVVFDIESTGLNTATDAIIEIAA--WDP-----VEATSFSSLVDPERSIPQETMA 822 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFY 111 I IT E +R + ++ + +IG+N D+ R F Sbjct: 823 IHHITDGMVRGAPR-LPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFE 881 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALA 166 R + D L +++A+ + P D G TS +L L Sbjct: 882 REGVCM------DNILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEG 935 Query: 167 NGIEHVN-AHDAKADVYAT 184 +E H A D Sbjct: 936 LHVEADGLLHRADTDAKTL 954 >gi|229525881|ref|ZP_04415286.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|229339462|gb|EEO04479.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] Length = 236 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E + + + + I+ + + + R W Sbjct: 104 THSDLQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 241 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 35/120 (29%), Gaps = 11/120 (9%) Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M + F +D ET G DV DR A V D V P Sbjct: 1 MMHWFEGPLAAFDTETTGVDVERDRIVSAALVAQDTAG---GRVRVTRWLVNPGIPVPPG 57 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 A I G+ R+G A I + + ++ N FD R+ Sbjct: 58 ATEIHGLADDHLQRNGRWPAPVMDEIARALAESCATGRPLVVMNAP-FDLTLLDRELKRH 116 >gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1404 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%) Query: 2 TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + V++D E+ G + A D + A D F + E + Sbjct: 757 MRTYRLVVFDIESTGLNTATDAIIEIAA--WDP-----VEATSFSSLVDPERAIPQETMA 809 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFY 111 I IT E +R + ++ + +IG+N D+ R F Sbjct: 810 IHHITDGMVRGAPR-LPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFE 868 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALA 166 R + D L +++A+ + P D G TS +L L Sbjct: 869 REGVCM------DNILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEG 922 Query: 167 NGIEHVN-AHDAKADVYAT 184 +E H A D Sbjct: 923 LHVEADGLLHRADTDAKTL 941 >gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1473 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%) Query: 2 TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + V++D E+ G + A D + A D F + E + Sbjct: 826 MRTYRLVVFDIESTGLNTATDAIIEIAA--WDP-----VEATSFSSLVDPERAIPQETMA 878 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFY 111 I IT E +R + ++ + +IG+N D+ R F Sbjct: 879 IHHITDGMVRGAPR-LPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFE 937 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALA 166 R + D L +++A+ + P D G TS +L L Sbjct: 938 REGVCM------DNILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEG 991 Query: 167 NGIEHVN-AHDAKADVYAT 184 +E H A D Sbjct: 992 LHVEADGLLHRADTDAKTL 1010 >gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] Length = 224 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 21/200 (10%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 ++D ET G DV DR +D I++ + A I GIT + Sbjct: 3 VFDLETTGVDVVNDRIVTAHVGVLDADGHVIDARDWLA---DPGVDIPDGAAAIHGITSE 59 Query: 67 KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +A DG + + S + N FD ++ R+ Sbjct: 60 RARADGAPAPRVVAEVVEALSALFAAGIPVVAYNAPFDFSMLKHEAVRHGVAPIEAPSP- 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 P + L +A + +AH+A AD A Sbjct: 119 ---------------VIDPLVVDKTYDRYRRGKRTLSVVAEHYAVPLESAHEACADAVAA 163 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + ++ + Sbjct: 164 GRLALALADRFAPWLPATLE 183 >gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 164 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 14/140 (10%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 12 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + L V F+ + +F + +N FD + F D + Sbjct: 69 HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124 Query: 121 SWDNGNSRWDLLDVMRAIYA 140 + D L + R ++ Sbjct: 125 N--TFCKVTDSLALARKMFP 142 >gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Atopobium vaginae DSM 15829] gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Atopobium vaginae DSM 15829] Length = 337 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 26/191 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FVI D ET G + D+ + +R+ ++++ + + D P +TG Sbjct: 168 KKFVILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKR--DSLNLSPAITQLTG 223 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + GV + QF + NI FD + N Sbjct: 224 LTDIELANRGVNPNLALNGLKQFI---GHLPVLGYNIAFDMRFINNELRSM------NEE 274 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N D++ ++ F S+ L ++ GI H A D Sbjct: 275 LLDNREIDVMRFIKKEKMFLE-------------SYALDNVLKVYGISATVPHRALGDAK 321 Query: 183 ATLALVWLIRE 193 L + + Sbjct: 322 LIAKLALKVNK 332 >gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 237 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 64/240 (26%), Gaps = 30/240 (12%) Query: 1 MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 MT ++ D ET G A D R + V + F C + L D A Sbjct: 1 MTERQIVLDTETTGM-PAADGHRLVEIGAVEMIE-RRVTGK--TFHCYLNPERLVDEGAF 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G++ F+ + +F + + +N FD + R Sbjct: 57 NVHGLSDAFLADKPK----FADVVDEFLAFIAGAELIIHNAEFDVGFLDAELARL----- 107 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 NG D+ + A + L L I++ H Sbjct: 108 ----ANGGRLADVAGSVTDSLAIARKKH-------PGQRNSLDALCRRYSIDNSARTLHG 156 Query: 177 AKADVYATLALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 A D + + + L Q +I + P + V R Sbjct: 157 ALLDSEILADVYLALTGGQKTLGFDSEHGQGDEHKQAASIIRLPADRPPLRVITANEEER 216 >gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 243 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 50/167 (29%), Gaps = 20/167 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D E+ G D+A DR A R+D E V EA I IT + Sbjct: 21 FDTESTGLDLANDRIVTAALWRIDPAARTKE---VTTWLIDPGIDIPQEATDIHHITTEH 77 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A G AE I + + N +D R+ + Sbjct: 78 AREHGRPAAEAVPEIGAALEKAAADGVPVVVYNAPYDLGLLSAELRRH----------DA 127 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 +R+D + P I S KL D+ +G+ Sbjct: 128 GARFDG-----TLRVLDPLVIDKRFDTFRRGSRKLVDVCAHHGVRLD 169 >gi|15641303|ref|NP_230935.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586529|ref|ZP_01676315.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121728837|ref|ZP_01681848.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|147673833|ref|YP_001216855.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153801317|ref|ZP_01955903.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|153819755|ref|ZP_01972422.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|153823215|ref|ZP_01975882.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|227081461|ref|YP_002810012.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229505123|ref|ZP_04394633.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229511206|ref|ZP_04400685.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229518325|ref|ZP_04407769.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229608142|ref|YP_002878790.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254848414|ref|ZP_05237764.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|298498618|ref|ZP_07008425.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] gi|9655777|gb|AAF94449.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549208|gb|EAX59240.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121628884|gb|EAX61341.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|124123142|gb|EAY41885.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|126509702|gb|EAZ72296.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|126519275|gb|EAZ76498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|146315716|gb|ABQ20255.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|227009349|gb|ACP05561.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227013207|gb|ACP09417.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229345040|gb|EEO10014.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229351171|gb|EEO16112.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229357346|gb|EEO22263.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229370797|gb|ACQ61220.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254844119|gb|EET22533.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|297542951|gb|EFH79001.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] Length = 236 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57] Length = 287 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSIRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20] Length = 287 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 251 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 33/196 (16%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +V+ D ET G A D+ + A +++ E ++ F + + I GI Sbjct: 87 YVVVDIETTGGSAARGDKIVEIAALKIRH-GETVDLFHRF---VNPEKPI--KNSHIHGI 140 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY-YSRNIFYRNFYDSYRWSW 122 T ++ E S IH F + I ++I FD Y + F+RN Sbjct: 141 TNERVKD----EQTISPVIHAFKAFLGDLPIVSHHIGFDWYSFLALEFFRNGIRP----- 191 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N + + R + + L +A I +N H A AD Sbjct: 192 --TNPAACTVLLAR--------------KYLDSPRNNLNVIAETYNIPLLNHHTADADAI 235 Query: 183 ATLALVWLIREKKPKL 198 ++ LI +K Sbjct: 236 CANEILQLIMKKATAQ 251 >gi|325678237|ref|ZP_08157866.1| exonuclease [Ruminococcus albus 8] gi|324110129|gb|EGC04316.1| exonuclease [Ruminococcus albus 8] Length = 651 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 31/197 (15%) Query: 2 TNHF---VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + +F +I D ET G + D Q + + + + E + + +F + EA Sbjct: 199 SENFDDMIILDTETTGLSPSYDELLQVSII--NGKGEVL--FDSYF---KPNAASWDEAQ 251 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + I+P+ E + I Q + +GYN D+ N Sbjct: 252 AVNHISPEMVKNSPR-LNEKAYEISQILDKAHKI-VGYNVDFDLDFLWLNGAG------- 302 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNA 174 N + +DVM+ + + G KL A G + +A Sbjct: 303 -----GSNDNFKKVDVMQMFAPIYGE---INEKYGGYKWQKLTKAADYYGYDWDSHAESA 354 Query: 175 HDAKADVYATLALVWLI 191 H++ D YATL + + Sbjct: 355 HNSLGDCYATLHVYKSV 371 >gi|153212279|ref|ZP_01948067.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 1587] gi|124116657|gb|EAY35477.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 1587] Length = 236 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V Q + + + ++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEGSIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + I+ + + + R W Sbjct: 104 THSELQHAQAPE----QVLKELLEALYGKIVVVHFRHIEREFLRQ------ISLNIWDEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013] gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710] gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 244 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T Q AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIQVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|254286611|ref|ZP_04961567.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] gi|150423369|gb|EDN15314.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] Length = 236 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V Q + + + ++ GI Sbjct: 46 SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEGSIVFHGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + I+ + + + R W Sbjct: 104 THSELQHAQAPE----QVLKELLETLYGKIVVVHFRHIEREFLRQ------ISLNIWDEA 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 213 TAELFQAQCAHHLP 226 >gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] Length = 237 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 30/211 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V D ET G V+ D+ + ++V + E+F C + + + +TG Sbjct: 4 KDYVAIDLETTGISVSKDKIIEVGLIKVINSHIE----EMFSCIINPNMPVSTKILNLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + + + I +F + + +N FD + + + + Sbjct: 60 IDENEIKTARYI-QDVIGDIVEF---CDGFDLIGHNTIFDYSFIKKEANNAGLNFEK--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R I + P L D GIE N H A +D Y Sbjct: 113 -------------RGIDTYKLCKKILPPYIQKN----LTDACAYFGIERKNMHRAFSDAY 155 Query: 183 ATLALVWLI--REKKPKLFEYLYDYRNKNQL 211 T L I K+ ++ + + K + Sbjct: 156 FTHMLYQEILTNFKELEIISEIMKVKLKKNV 186 >gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] Length = 862 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERF---INPG-VPVGQSEEVHGFSD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G A + +F II +N+ +D N R+ Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL LA I H H+A D+ AT Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASEFPIHHEPTHNAMDDILATA 649 Query: 186 ALVWLIREKK 195 L+ ++ Sbjct: 650 QLLIYAVKEN 659 >gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] Length = 231 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 53/206 (25%), Gaps = 29/206 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + R + + + + + F + EA + G+ Sbjct: 4 IVLDTETTGFEPSEGHRIVEIGAL---ELFNHLPTGRTFHKYLNPERSMPKEAFDVHGLG 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +R +F + +N FD + + Sbjct: 61 DDFLRGKPL-FRAVAREFLEFI---GDATLVIHNASFDMKFLNAELAAANLPLLPFE--- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D + + R + SP L L G+++ H A D Sbjct: 114 --RALDTVLMARKKFPGSPA--------------SLDALCRRFGVDNSGREKHGALLDSE 157 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 + + + K Sbjct: 158 ILAEVYLELIGGRQPDLVLAQHQSTK 183 >gi|145295382|ref|YP_001138203.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R] gi|140845302|dbj|BAF54301.1| hypothetical protein [Corynebacterium glutamicum R] Length = 237 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 30/187 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + R A V + + + A + GIT + Sbjct: 22 FDLETTGVNPFDTRIVTSAMVTITSKGAEPIELLA-----DPGIEIPEAATAVHGITTEH 76 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G E +I +N + + Sbjct: 77 ARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNH---------------D 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + P I L D+ ++ NAH+A +D A Sbjct: 122 PSFTIDGL-------VYDPFVIDKVKDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAA 174 Query: 185 LALVWLI 191 + W Sbjct: 175 ARIAWKQ 181 >gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99] gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans Agy99] Length = 329 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 77/295 (26%), Gaps = 38/295 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D S P P + G+T Sbjct: 18 VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSL---LNPGGDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + Sbjct: 73 MLEDQPQ-FADIVGDLTELLR---GRTLVAHNVAFDYSFLAAEA---------------- 112 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184 +L D + + + G + +L+ LA G+ HDA D Sbjct: 113 ---ELTDAELPVDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSG 169 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + L R ++ ++ ++ + + + PL ++ V Sbjct: 170 ILAPALQRARERDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMP--CPYLNPGRYVC 227 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 P + + +L +R+ + V V N+ Sbjct: 228 DRPLVQGMRVAL------AAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNE 276 >gi|21324010|dbj|BAB98636.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 245 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 30/187 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + R A V + + + A + GIT + Sbjct: 30 FDLETTGVNPFDTRIVTSAMVTITSKGAEPIELLA-----DPGIEIPEAATAVHGITTEH 84 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G E +I +N + + Sbjct: 85 ARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNH---------------D 129 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + P I L D+ ++ NAH+A +D A Sbjct: 130 PSFTIDGL-------VYDPFVIDKVKDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAA 182 Query: 185 LALVWLI 191 + W Sbjct: 183 ARIAWKQ 189 >gi|83814553|ref|YP_445082.1| exonuclease, putative [Salinibacter ruber DSM 13855] gi|83755947|gb|ABC44060.1| exonuclease, putative [Salinibacter ruber DSM 13855] Length = 249 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 55/197 (27%), Gaps = 28/197 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V +D E G D R Q R ++ +TG Sbjct: 8 LVFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDE--TIDVLVDPQEEIPAAVTDLTG 65 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++P + RI + + + GYN + +D + F R+ + Sbjct: 66 LSPDAVRQAP-PLGAHLDRIAPLLADAD--LAGYNALAYDIPLLQAEFERHG-----RTL 117 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVNAHDAKADV 181 + R +LD R P L L G +AHDA +DV Sbjct: 118 PGPDDRV-VLDPYRLEQVLRPRT--------------LSALYERYTGDALDDAHDALSDV 162 Query: 182 YATLALVWLIREKKPKL 198 A ++ Sbjct: 163 EAAGRVLQRQLADHDID 179 >gi|19552464|ref|NP_600466.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC 13032] gi|62390130|ref|YP_225532.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC 13032] gi|41325466|emb|CAF19946.1| putative DNA polymerase III alpha subunit, the Gram-positive type [Corynebacterium glutamicum ATCC 13032] Length = 237 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 30/187 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + R A V + + + A + GIT + Sbjct: 22 FDLETTGVNPFDTRIVTSAMVTITSKGAEPIELLA-----DPGIEIPEAATAVHGITTEH 76 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G E +I +N + + Sbjct: 77 ARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNH---------------D 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L + P I L D+ ++ NAH+A +D A Sbjct: 122 PSFTIDGL-------VYDPFVIDKVKDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAA 174 Query: 185 LALVWLI 191 + W Sbjct: 175 ARIAWKQ 181 >gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 242 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 56/190 (29%), Gaps = 18/190 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V EA + G+T + Sbjct: 13 FDTETTGVDVETDRIVSAAVVVQDAPGV---RPRVSRWLVNPGVPVPAEATAVHGLTEEH 69 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+G A I + + ++ N FD R+ + W Sbjct: 70 LQRNGRWPAPVVYEIAETLAEQAHAGRPVVVMNAP-FDLTLLDRELRRHRASALGR-WFE 127 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 W L + + L DL G+ AHDA AD A Sbjct: 128 SAPLWVLDPRVLDKHL----------DRYRKGRRTLTDLCAHYGVALEGAHDAAADAMAA 177 Query: 185 LALVWLIREK 194 L + + + Sbjct: 178 LEVTRAVGRR 187 >gi|67077901|ref|YP_245521.1| DNA polymerase III fragment [Bacillus cereus E33L] gi|66970207|gb|AAY60183.1| possible exonuclease [Bacillus cereus E33L] Length = 287 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 11/135 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FVI D ET G D+ + + D + + EA I G Sbjct: 129 DQFVILDTETTGL-TLRDQIIEICVI--DLTGKIL-----LNSLVKPTINIPAEAASIHG 180 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E + + + + ++ YN N S Sbjct: 181 ITNKMVHDAP-SWIEIYKELCEVTA--GKTLLIYNAEFDLGMIESTCIANNVEFKNFKST 237 Query: 123 DNGNSRWDLLDVMRA 137 D +D R Sbjct: 238 CIMKMYADYVDSKRW 252 >gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d] Length = 287 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] Length = 862 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 25/186 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSEEVHGFSD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G A + +F II +N+ +D N R+ Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL LA I H H+A D+ AT Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASKFPIHHEPTHNAMDDILATA 649 Query: 186 ALVWLI 191 L+ + Sbjct: 650 QLLIYV 655 >gi|229521403|ref|ZP_04410822.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229341501|gb|EEO06504.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] Length = 233 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V Q + + + E++ GI Sbjct: 43 SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEDESIVFHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 210 TAELFQAQCAHHLP 223 >gi|153826601|ref|ZP_01979268.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2] gi|149739613|gb|EDM53833.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2] Length = 233 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V Q + + + ++ GI Sbjct: 43 SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEGSIVFHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + I+ + + + R W Sbjct: 101 THSELQHAQAPE----QVLKELLEALYGKIVVVHFRHIEREFLRQ------ISLNIWDEA 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 210 TAELFQAQCAHHLP 223 >gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R] gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R] Length = 467 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 54/174 (31%), Gaps = 28/174 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62 +FV +D ET + Q V+ ES+E + C P + E + I G Sbjct: 114 NFVGFDVET--ANDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIHG 169 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ITP+ F+ + + + +N +FD + D + Sbjct: 170 ITPEMVADQPR----FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIY 225 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 L + R + KL +A G+E N HD Sbjct: 226 ------GCSLTLARNEKL-------------QVENHKLPTVASHLGVELKNHHD 260 >gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 244 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T Q AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIQVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52] Length = 323 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----TELTGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 163 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296 >gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4] gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4] Length = 241 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 34/116 (29%), Gaps = 7/116 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET GRD + R A V V E +A I GI+ Sbjct: 24 ICAFDLETTGRDPSTARIVS-ACVAVIDGSNV----ETRTWLLDPGVDIPADASAIHGIS 78 Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + A R G AE I S + N +D R ++ Sbjct: 79 TEYAARHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAF 134 >gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 246 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 8/112 (7%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66 +D ET G + R A V V AD +P PE A I GI+ Sbjct: 12 FDLETTGTEPGESRIVTAAVVEVRG-----GEVRERRGWLADPGIPIPEQASAIHGISTA 66 Query: 67 KALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +A+ +G E ++ + ++ N FD R+ Sbjct: 67 RAVAEGRPVREVAQEVAAALVEHWRRGAVVVAYNAAFDLTLLSAELARHGLP 118 >gi|262159037|ref|ZP_06030149.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262169396|ref|ZP_06037088.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262022209|gb|EEY40918.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262029222|gb|EEY47874.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] Length = 233 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 43 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 210 TAELFQAQCAHHLP 223 >gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243] gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243] Length = 258 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 72/236 (30%), Gaps = 24/236 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G V DR A + +R + +A + G+T + Sbjct: 37 FDTETTGVWVRRDRIATASLIR-----RVGGEDTAYNWVINPGVPMPVKASEVNGLTDEY 91 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + G A I + + + N+ FD R + R G Sbjct: 92 LEKHGEQPAVALAEIASELAAAMSSGVPVVGFNVAFDFEILEAELARYELPTLRA--RLG 149 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184 ++D + KL + A G++ A H A +DV AT Sbjct: 150 GRIAPVIDPLVLDRTL---------DRYRRGKRKLATVCEAYGLDGNRAFHQADSDVTAT 200 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240 L L+ + E+ L ++L + T + + +R + + Sbjct: 201 LDLLGAMIERYESLRGMEL-----DELHDFQAAAHRTWAENFNEYMARTRPDYRPV 251 >gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] Length = 236 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 58/183 (31%), Gaps = 26/183 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G D A VRV + F+ + A ITGI Sbjct: 49 YSVIDTETTGLRPDAGDEVISVACVRV-VSAKIQNDY--FYTLVDPEREVPELAATITGI 105 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ V+E + + + +I NI+FD + N + Sbjct: 106 TTERVQGQPVLE----KVLPRMLREMAGGVITGFNIQFDLVFLN-----NGLKRKCGTTL 156 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N D+L + R A +F L +A I + H+A D Sbjct: 157 NPPMVLDVLSLCRI-------------LKPRARTFGLGAMAREYQISVKDRHNALGDALI 203 Query: 184 TLA 186 T Sbjct: 204 TAR 206 >gi|159903267|ref|YP_001550611.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9211] gi|159888443|gb|ABX08657.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9211] Length = 245 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 29/192 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +I D ET G D D+ + + + + + F ++ A I Sbjct: 20 PKTLLILDTETTGLDSDKDQCLEIGAILFHVKTRSVLAQNSFLLPVDENS-----AESIN 74 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P + R E + + ++ +N Sbjct: 75 RI-PAEITRIFQPW-EMGMKYFEELVDCAEAVVAHNVAFDKQ------------------ 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + S + I WPS + ++DLALA I +AH A D Sbjct: 115 ----WFGSPPLPKLIKPWICSMEDISWPSHLQLRSRPSVRDLALAYEIPVWSAHRALTDC 170 Query: 182 YATLALVWLIRE 193 + + Sbjct: 171 IYLAEVFRRCDQ 182 >gi|229119030|ref|ZP_04248372.1| exonuclease [Bacillus cereus Rock1-3] gi|228664421|gb|EEL19920.1| exonuclease [Bacillus cereus Rock1-3] Length = 240 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 11/135 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FVI D ET G D+ + + D + + EA I G Sbjct: 82 DQFVILDTETTGL-TLRDQIIEICVI--DLTGKIL-----LNSLVKPTINIPAEAASIHG 133 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + E ++ + + ++ YN N S Sbjct: 134 ITNEMVHDAP-SWIEIYIKLCEVTA--GKTLLIYNAEFDLGMIESTCIANNVEFKNFKST 190 Query: 123 DNGNSRWDLLDVMRA 137 D +D R Sbjct: 191 CIMKMYADYVDSKRW 205 >gi|126342238|ref|XP_001368108.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica] Length = 241 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 62/208 (29%), Gaps = 31/208 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A A+ + + D ++ + C Sbjct: 8 ETFVFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMC-- 65 Query: 48 ADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFS--VPNTCIIGYNNIRFDD 103 + P+A ITG++ Q + R + +F C++ +N +D Sbjct: 66 -PEQNFTPKASEITGLSNQNLADNHKAGFNGAVIRALREFLKRQKSPICLVAHNGFDYDF 124 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 R R D G D L +R G S+ L +L Sbjct: 125 PLLRTELQRLGADL-----PGGTVCLDTLPALRG---LDKVHHHSTRASHGKKSYSLGNL 176 Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190 E AH A+ DVYA + + Sbjct: 177 YRRYFDDEPQAAHSAEGDVYALVMVFLH 204 >gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] Length = 239 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 19/202 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G D D+ V D E I + E+ I G+ Sbjct: 52 SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 109 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + +E R F ++ ++ + + + ++F + Sbjct: 110 TPQALEQGCSLEQGMMR----LFERAQGKVLLAHSAIIEQGFLQAFAQQHFQLA-----K 160 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + + + +SF+L DL + ++H A +D A Sbjct: 161 LPCHFVDTLQI--------EKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASDALA 212 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 L + +K + + Sbjct: 213 CAELFIVQSKKLDLNKQRQLNT 234 >gi|269102313|ref|ZP_06155010.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162211|gb|EEZ40707.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 242 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G + D + +I S + E+V I GIT Sbjct: 52 FVALDFETTGLNSKTDDIVSIGLIPFTIH--RIYSKQAQHWVVKPKRPLAEESVVIHGIT 109 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + ++ + R F D+ Sbjct: 110 HSDIQAAP-DLRRILDQVLDALA--GKVVVVH----------YKTIERQFMDAALQLRIG 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181 + ++D + Y W S +L G+ H A D Sbjct: 157 EGIEFPVVDTLALEYEIERQKHSGFWNRLRGRRPGSVRLNKCRERYGLPTYQPHHALTDA 216 Query: 182 YATLALVWLIREKK 195 AT L+ Sbjct: 217 IATAELLQAQIAYH 230 >gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] Length = 229 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G D DR + V + F + A + G++ Sbjct: 4 IVFDTETTGLDPRTGDRMVEIGCVEM-VSLVPTG--NTFHAYYNPERDMPAGAEAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + F + +N FD + ++ S Sbjct: 61 AAFLSDKPL-FRDTAHELLDFI---GDAPLIAHNAGFDFGFLNAELALCEREAVCMSRM- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D + + + + + L L GI+ H H A D Sbjct: 116 ----IDTVALAKKRHPGA--------------KLSLDALCTRYGIDRSHRVKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAQVY 163 >gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] Length = 191 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 18/158 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V++ E + + P D P EA + Sbjct: 37 KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 92 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--------- 112 G + E + I ++FS + + +N +FD +Y + F + Sbjct: 93 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDMLDQP 149 Query: 113 --NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW 148 D R W +++ D A+ A D +W Sbjct: 150 VYCTMDGARRLWRGDSTKLDHCSQRLALRARGTDTARW 187 >gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 244 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 6/111 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R V E + E +AV + GI+ ++ Sbjct: 11 FDLETTGTDPREARIVT-GAVIEVMGSEPLGRREWLA---DPGVEIPADAVAVHGISNER 66 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A R+G + + I + N FD R+ Sbjct: 67 AAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALP 117 >gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] Length = 223 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET + R A VR+D + + EA + GIT Sbjct: 9 LAFDLETTSANPKEARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQEATNVHGITT 63 Query: 66 QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +KA +G E + + +I YN Sbjct: 64 EKARAEGRPHEEVLKDTVEAIKAAWEDGLTLIVYNAAFDLTVL----------------- 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + + + Y +W L + G+E NAH+A AD Sbjct: 107 RSLTGDFTVTGPVYDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 161 Query: 183 ATLALVWLIREKKPKLFEYL 202 A + W + + Sbjct: 162 AAARVAWKQVRQHYPNLAQM 181 >gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC 12478] Length = 329 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 28/196 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D + DP + I G+T Sbjct: 18 VIDVETSGFRPGQARIISIAVLGLDADGRV---EQSLVSLLNPGV--DPGSTHIHGLTAG 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLEDQPQ-FADIVGDVVELLR---GRTLVAHNVAFDYAFLAAEAEMAGAELPVDT----- 123 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 ++ + +L+ LA G+ HDA D Sbjct: 124 ----VMCTVELSRRLELGVDN----------LRLETLAAHWGVIQERPHDAFDDARVLTG 169 Query: 187 LVWLIREKKPKLFEYL 202 ++ E+ + +L Sbjct: 170 VLAAALERAREREVWL 185 >gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] Length = 937 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + ++ + +++ +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNRDVAQARDFNY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ + +K L + + Sbjct: 163 TAKLLLKVIKKLEALPQATLNT 184 >gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] Length = 937 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + ++ + +++ +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNRDVAQARDFNY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ + +K L + + Sbjct: 163 TAKLLLKVIKKLEVLPQATLNT 184 >gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C6] gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C6] Length = 191 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 12/195 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G + AQ + + D+ + + ++ A + G+T Sbjct: 2 YVFLDTETTGLHP--GQIAQLSYLVTDKNLKLKKVFNQYYSV----DRMSRSAAKVHGLT 55 Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 L +G+ + + +I +NI FD + + F R + Sbjct: 56 MDILDELSNGMTFEDTVDEVRDDLEDS---VIIGHNISFDIRFLKAEFERLGPEYIPKDK 112 Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + P I+ + L+ G V HDA+ D Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLIELMEFLEQCPHEGLEFTKETYGCSDVGFHDARYDT 172 Query: 182 YATLALVWLIREKKP 196 Sbjct: 173 GILYLCYKKGVLLDH 187 >gi|152994734|ref|YP_001339569.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] gi|150835658|gb|ABR69634.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 220 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 24/196 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFITG 62 +++ D ET G D D F V + + +++ V D +V I Sbjct: 28 YLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDTARHIVLDSAQIGD------SVGIHM 81 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + G + R + ++ ++ + + ++ + S+ SW Sbjct: 82 ITDSDVQQQGKKQESVLRYLRHLLRER---VLVMHHAPMELGFLKHAWQTEALPSFSVSW 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L + R + F+L G+ HDA D Sbjct: 139 ------LDTLAIERTKA-------NRSQQPIQDGGFRLGACRERYGLPDYQGHDALTDAL 185 Query: 183 ATLALVWLIREKKPKL 198 AT L+ + + Sbjct: 186 ATAELLLAQIAYQGRD 201 >gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602] gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602] Length = 238 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 27/223 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + T F +P + + PEA+ G Sbjct: 31 VVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAAAERAGLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + ++ + AH Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ISAGIVFDSSQAHS 193 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 A D T L + + +L + + ++ + Sbjct: 194 ALYDTERTAELFCELVNRWKRLGGWPLALSD-EEVEDETASEE 235 >gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 238 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 19/202 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G D D+ V D E I + E+ I G+ Sbjct: 51 SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + +E R F ++ ++ + + + ++F + Sbjct: 109 TPQALEQGCSLEQGMMR----LFERAQGKVLLAHSAIIEQGFLQTFAQQHFQLA-----K 159 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + + + +SF+L DL + ++H A +D A Sbjct: 160 LPCHFVDTLQI--------EKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASDALA 211 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 L + +K + + Sbjct: 212 CAELFIVQSKKLDLNKQRQLNT 233 >gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552] gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552] Length = 261 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 73/224 (32%), Gaps = 28/224 (12%) Query: 1 MTNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M N +V+ D+ET G + D Q A V ++ E + CKP + P A Sbjct: 1 MKNKYVVLDFETTGVNRYHNDEVVQVAIV--NQDDEVL---INELCKPKHHFS-WPSAQR 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GI+P + + RI + F + I+ YN + + + D + Sbjct: 55 INGISPLMVKDK-LCFESYIDRIIEIF-DNSEFIVCYNIA-----FEQGMLKNYGIDISK 107 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + + + + + R + G L A G AHDA Sbjct: 108 YVFKDPMKDFAYIYGERGYH-------------GGYKWQSLSTCAKYFGYNFA-AHDALE 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 DV AT I K E Y K L+ Q Sbjct: 154 DVKATRYCFEQIEAYKNGKIEKSYLNNWKLLFEPLVIKQGKKYY 197 >gi|312887481|ref|ZP_07747079.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] gi|311300023|gb|EFQ77094.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] Length = 232 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 29/205 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADD 50 M ++F+ D ET G +P Q + + R E+I+ + + DD Sbjct: 1 MQDYFLFIDTETSGLPKDWSQPYSNDANWPYALQVSWIIYTRAGEEIKR-NNHYIR-DDD 58 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + +PEA I GI+ + G + + ++Q ++G + + D + F Sbjct: 59 FTINPEAYNIHGISREFLNLHGEWRKDVMQLLYQDMLQYKPMVVG-HYVELDYNIAGVDF 117 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGI 169 YR D N M + R+ +L L + Sbjct: 118 YRIGMD-------NPMDTLPRYCTMLGSKGY--------GRNPRVEYLRLGQLYSALFNR 162 Query: 170 EHVNAHDAKADVYATLALVWLIREK 194 N H+A D AT + + Sbjct: 163 TLYNQHNAIIDAEATAECFFEMMRD 187 >gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] Length = 470 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 26/205 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63 FV D ET + Q VR E +++ + C P E + I GI Sbjct: 126 FVAVDVET--ANDNWGSICQIGAVRYRDGGET--ASQSWLCTPPPGLEHFAEINISIHGI 181 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A + + F + +I +N++FD R+ D Sbjct: 182 TAADVEGA-MPFATAAAELFDFI---GSDVIVAHNVQFDSSALRSGLLAAGAD------- 230 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + + KL + G HDA D A Sbjct: 231 --------VPTVPLACSLALSRDASRQGVISVANHKLPTVVKHLGGASFTHHDATEDARA 282 Query: 184 --TLALVWLIREKKPKLFEYLYDYR 206 T+ R L+ R Sbjct: 283 AGTIITGLAQRFGHTGSITDLFTTR 307 >gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701] gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701] Length = 187 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 31/193 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ FV D+ET + + D A +RV + + T P+ ++ I Sbjct: 23 SSSFVALDFET--ANYSRDSVCSLAIIRV-ESLKVVSRTYRLIRPPSPHFMF----TDIH 75 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E F I +N FD R Sbjct: 76 GITWGDVKSEP-TFKELWHEFRPLFE--GISFIAAHNASFDSSVMRACC------DTYRI 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G + + R + P L + G+ H+ H+A +D Sbjct: 127 VPPGAPYLCTVKLARQTWQLRPA--------------NLPSVCAYLGL-HLEHHNALSDA 171 Query: 182 YATLALVWLIREK 194 A +V Sbjct: 172 EACANIVRAAAGC 184 >gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] Length = 287 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRTILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] Length = 307 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 30/196 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ +V D ET + V+ + +++ + D +FI Sbjct: 1 MSYSYVALDVET--ANDFRGSVCSIGLVKF-KDGNIVDAFYTL---INPEEEFDDFNIFI 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP+ L E + I F + I+ + +FD Sbjct: 55 HGITPEDVLDSP-TFPEVRKAIVDFI---GSDIVVAHFAQFDMGA---------LKDVYQ 101 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ + + R G ++KL+ LA IE + H+A +D Sbjct: 102 KYELDFDNIEYICSYRLAKV----------ALPGQLNYKLKRLAKNLNIELDH-HNALSD 150 Query: 181 VYATLALVWLIREKKP 196 A+ ++ + Sbjct: 151 ARASGLILEYLLSTNS 166 >gi|32455548|ref|NP_862304.1| Ycg4D [Corynebacterium glutamicum] gi|9836715|gb|AAG00279.1|AF164956_11 Ycg4D [Corynebacterium glutamicum] Length = 296 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 58/192 (30%), Gaps = 26/192 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G + + A D + + F + + A + GI+P Sbjct: 115 LVLDTETTGLGYD-AQVIEIAI--ADASGKVL-----FDTRIKPTVAIEAAAQEVHGISP 166 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + RI S +I +N FD ++ WS Sbjct: 167 DALINAP-SWPEVANRIEALLS--GRTVIIFNA-SFDSRLIAQTAGAFGLETGWWS---- 218 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 R + + S L D A G AH A AD AT Sbjct: 219 ------TCTTRCAMHLAASAY---GSTNPYGSISLADATSAAGVPWTGAAHSAAADTLAT 269 Query: 185 LALVWLIREKKP 196 + LV I KP Sbjct: 270 VELVKSIARVKP 281 >gi|255745686|ref|ZP_05419634.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|255736761|gb|EET92158.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] Length = 233 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 43 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 210 TAELFQAQCAYHLP 223 >gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 417 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 29/198 (14%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D+ET G DR + A V +D Q E P+ I I Sbjct: 6 FAVIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETL---VNPGRDLGPQ--RIHQI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + ++ ++ +N FD + R + Sbjct: 61 RASDIVDAPAFEH-IAGQLVDLLE---GRVLVAHNASFDLKFLVAELER--------TAA 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + L M+ + P + L D A I+ +AH A AD +A Sbjct: 109 WMSTDFVSLCTMQLAREYLPGAGR-----------ALADCCAALDIQLDDAHRASADAFA 157 Query: 184 TLALVWLIREKKPKLFEY 201 T L+ E + + Sbjct: 158 TAQLLAAYIESEANDEIW 175 >gi|295103993|emb|CBL01537.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Faecalibacterium prausnitzii SL3/3] Length = 330 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 60/247 (24%), Gaps = 34/247 (13%) Query: 1 MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 M + V++D E G + V++D +++ + +P Sbjct: 1 MPRNLVLFDLEWNIGYQPYTFNYHGVQQTLRGEIVEIGAVKIDEDANVLDTFSIHL-RPR 59 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 +TG+T G + + +F D + Sbjct: 60 IFRKLQHHIAKVTGLTQADL-DKGEP---IVQGLRRFMQWCGPDAEFAEWGLDDVPVLKQ 115 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + D R + ++ L+ + G Sbjct: 116 NLFLCNLDESRPT----------------VWYDLQQVFLREHPRKEGEGMTLESVVTRMG 159 Query: 169 IEHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 I HDA +D T + L+ + D + L + + H Sbjct: 160 IPMERPFHDALSDTLYTADVCRLLDLRAGLAAYPTEDEALRQSLCQTPGDYRDFTVFHGY 219 Query: 228 GMFGASR 234 A R Sbjct: 220 VEQYAWR 226 >gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2] gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] Length = 276 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G + + ++ I+ E F +TGI Sbjct: 70 FVVVDIETNGSKPEFSQVIEIGAIKFKGN-TIIDRFESFIYA----EDVPEYISKLTGIL 124 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + E +F + +N+RFD + + + + Sbjct: 125 QEDLENAP-SQKEVLLSFKEFLQD---AVFVAHNVRFDYNFISSKLEQLGLEKLAN---- 176 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D+ R + + + L+ L GI +H A AD Sbjct: 177 --RKLCSIDLAR--------------KTIESERYGLEFLNETLGINTAVSHRAYADALTA 220 Query: 185 LALVWLIREKKPKL 198 ++ + EK P Sbjct: 221 YKILQMSFEKLPNE 234 >gi|15677698|ref|NP_274859.1| oligoribonuclease [Neisseria meningitidis MC58] gi|11133786|sp|Q9JXW1|ORN_NEIMB RecName: Full=Oligoribonuclease gi|7227120|gb|AAF42197.1| oligoribonuclease [Neisseria meningitidis MC58] gi|325133508|gb|EGC56171.1| oligoribonuclease [Neisseria meningitidis M13399] gi|325200921|gb|ADY96376.1| oligoribonuclease [Neisseria meningitidis H44/76] gi|325206775|gb|ADZ02228.1| oligoribonuclease [Neisseria meningitidis M04-240196] Length = 187 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +DD L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|317050855|ref|YP_004111971.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316945939|gb|ADU65415.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 250 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 52/191 (27%), Gaps = 12/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D+ET G D V ++I E + +++ + GIT Sbjct: 60 LLALDFETTGFDPKRHGIVSIG--LVPMSLQRIRCAEARHWIVKPRVQLESQSIVVHGIT 117 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +R + + ++ ++ + + + ++ + Sbjct: 118 HSDVATAP----DLARILDELLEAMAGHVMVVHHRGIERSFLDAALKARIGEGIQFPVID 173 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + + P S +L + H H A D AT Sbjct: 174 TMELEARLHRQKPPGLLARLLGRKP------VSIRLAASRARCNLPHYRPHHALTDALAT 227 Query: 185 LALVWLIREKK 195 L+ Sbjct: 228 AELLQAQIAHH 238 >gi|87121437|ref|ZP_01077326.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121] gi|86163280|gb|EAQ64556.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121] Length = 242 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 50/190 (26%), Gaps = 15/190 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D V + ++I + +++ I +T Sbjct: 56 IALDLETTGLKSQKDTIVSVGSVAM--NAKRIRCASSNYWVVNPGAPLSAQSITIHELTH 113 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + I + ++ + R F Sbjct: 114 SDVEQAP-PLSRYFEAILDALA--GKVVVVH----------CAAIERQFLYQAAKKLYGQ 160 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + +LD + G TS +L G+ AH A D YA+ Sbjct: 161 DLFFPVLDTLALEQKILKQRPLMARMFRGNTSVRLDACRQRYGLPRYKAHHALTDAYASA 220 Query: 186 ALVWLIREKK 195 L+ Sbjct: 221 ELLQAQIAHH 230 >gi|229496898|ref|ZP_04390606.1| exonuclease [Porphyromonas endodontalis ATCC 35406] gi|229316216|gb|EEN82141.1| exonuclease [Porphyromonas endodontalis ATCC 35406] Length = 257 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 66/206 (32%), Gaps = 23/206 (11%) Query: 2 TNHFVIYDYETFGRD-----VALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 + V++D +T G D P Q A +D +++ F +P Sbjct: 47 PHSIVLFDTDTTGLPNAPIQREEDSPELIQLAWCVLDSHLREVKRCNRFISGIN---VPS 103 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRN 113 EA I GIT ++ + G + + +F S + ++ +N+ FD + R Sbjct: 104 -EATAIHGITTEELKQRGEAARDV---LLEFLSDWDGDTLLVAHNLAFDLHILGKALERA 159 Query: 114 FYDSYRWS-------WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD-GATSFKLQDLAL 165 + + + + ++ + + + P ++ L Sbjct: 160 GCTQGQIRKVSCHAAQYSYCTMLETCNLCKLPHLEHTNARAIPHQEPYKYPRLGELHSFL 219 Query: 166 ANGIEHVNAHDAKADVYATLALVWLI 191 HDA D+ + + + Sbjct: 220 FGNDPTGETHDAVQDLDTCVRCFYQL 245 >gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541] gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541] Length = 214 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + I+ T F +P + +P A+ TG Sbjct: 20 VVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLEPAALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + N R+ Sbjct: 80 IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D I L + GI A Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVTAGIPFDGKQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + K Sbjct: 181 HGALYDTNRTALLFCELVNK 200 >gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 269 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 28/225 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D ET G + + + A V+V + + I+ E +P ITGI Sbjct: 69 FCIVDIETNGSKIEKHQIIELAAVKV-KNGQIIDRFESLV----HTKEINPHITEITGIA 123 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +F + ++++FD + + + Sbjct: 124 ADDTTNAP----QLKDVLIRFKLFLGNAVFVAHDVKFDYSFISKSLQKIGLEPLL----- 174 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S L R + ++ + H A +DV T Sbjct: 175 NRSLCSLALAERTVVSYRYALSYLNETLKLNPKAR--------------HHRAMSDVITT 220 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 L L + + + + D ++ + PL+ V Sbjct: 221 YGLFLLSLDNLDENIKTVEDLIKFSKEAPRLKRPKFDPLLEVKQE 265 >gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] Length = 937 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + ++ + +++ +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNRDVAQA-RDFKYYAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ + +K L + + Sbjct: 163 TAKLLLKVIKKLENLPQATLNT 184 >gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5] gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5] Length = 229 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 26/199 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA I GI+ Sbjct: 7 IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F S I +N FD + + + Sbjct: 64 GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTEIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R+++ + + L L +++ H A D Sbjct: 118 LANTIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEY 201 + + + F+ Sbjct: 164 LLAEVYVELMGGRQSAFKM 182 >gi|327483977|gb|AEA78384.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 233 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+ET G + D V ++I ++ + + E++ GI Sbjct: 43 SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E + + + + I+ + + + R W Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEV 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ R + Q +R S +L + + + H A D A Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209 Query: 184 TLALVWLIREKKPK 197 T L Sbjct: 210 TAELFQAQCAHHLP 223 >gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165] gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165] Length = 216 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 30/203 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D ++ KP ++ +PEA+ + G Sbjct: 22 VVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENANINPEALKVNG 81 Query: 63 ITPQKALRDGVVEA----EFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A R V E E + + + +I +N FD + + R Sbjct: 82 IDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAFLQAAVKR---- 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + + + + D + L I A Sbjct: 138 --INTKRDPFHPFAMFDTATLAGFMYGQTV-------------LVKACQMAQIPFDGKQA 182 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D T L + K Sbjct: 183 HSALYDTERTAELFCAMVNKLKD 205 >gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] Length = 904 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 83/265 (31%), Gaps = 21/265 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V++D ET G +V D Q A VR+ + S+ V F + D +P + Sbjct: 522 IVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRD-IPQQLGEIENPLI 580 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + + ++ +N +D + R Sbjct: 581 AEMQRHVLHSHAEGLQMFMDYV---GDSMLLGHNADYDYHILDFNLQRYLPAISLKEQ-- 635 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L ++R + +KL+ L +E NAH A ADV AT Sbjct: 636 CPRYLDSLKLVRL-------------LEPNLREYKLKHLLSVLHLEGENAHLADADVDAT 682 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLID--IQNMTPLVHVSGMFGASRSNTALIAP 242 +V K + ++ + +K + +N + + + + R Sbjct: 683 CNVVRHCYGKAKLMVPSQLEWIRHPRFKKRAEVLRKNYSDIYNAAKQRLYQREKPGDEPV 742 Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQD 267 + + + + + + Sbjct: 743 LVREMQRFYAFLCSEKLLEPQDKLH 767 >gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 215 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P V E + I + S + I+ +N FD ++ R Sbjct: 80 INPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T +A + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMPFDGAQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTEQTAQLFCEIVNR 200 >gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] Length = 236 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D+ET G D D+ V + I S++ ++ PE I G+ Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAKINGL 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + G+ E R+ + + ++ + + + + + Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D ++ FS G + +S++L DL + +H A +D A Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211 Query: 184 TLALVWLIREKKPKLFEYLYD 204 L + +K L + Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232 >gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30] Length = 287 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 237 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57 +I D ET G + R + V E I+ F + A Sbjct: 7 IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + L + + + + I+ +N FD + Sbjct: 61 LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175 ++ S D L + R ++ + L L H N H Sbjct: 117 KINTF---CSIIDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 A D Y L L+ + LF K +KL + Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204 >gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] Length = 329 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 78/295 (26%), Gaps = 38/295 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D S P P + G+T Sbjct: 18 VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSL---LNPGVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLEDQPQ-FADIVGDLTELLR---GRTLVAHNVAFDYSFLAAEAELADAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184 S +++ R + + +L+ LA G+ HDA D Sbjct: 123 SVMCTVELARRLELGIDNL-------------RLETLAAHWGVTQERPHDAFDDALVLSG 169 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 + L R ++ ++ ++ + + + PL ++ V Sbjct: 170 ILAPALQRARERDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMP--CPYLNPGRYVC 227 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 P + + +L +R+ + V V N+ Sbjct: 228 DRPLVQGMRVAL------AAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNE 276 >gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter pylori 83] Length = 287 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPNYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli RN587/1] Length = 155 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 12/118 (10%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GI + L AE + + + +N FD + F D Sbjct: 66 HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYEFSLLKRDIP 119 >gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] Length = 244 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAK 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|227496849|ref|ZP_03927115.1| possible DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] gi|226833644|gb|EEH66027.1| possible DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] Length = 174 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 11/109 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA----VFI 60 + + D ET G A D + V + PD FI Sbjct: 49 YAVVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTL---INPGAGPDGAIEVGPTFI 105 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 G+ P + + + + + ++ +N RFD + Sbjct: 106 HGLLPDDLAGAP-SLDDVADLLVRDLA---GRVVVAHNARFDVGFLTQA 150 >gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440] gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440] Length = 607 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 53/188 (28%), Gaps = 24/188 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + V+V E V P +TGI Sbjct: 53 TFVVVDLETTGGTPDGGGITEIGAVKVRGG----EQLGVLATLVNPGTPVPPFVTVLTGI 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L E +F P ++ +N +D + + + Y Sbjct: 109 TQSMLLPAP-PITEVLPSFLEFL--PPDAVLVAHNAPYDVGFLKAACAAHGYRWP----- 160 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + R + D + +L LA H A D A Sbjct: 161 -SPRVLDTAALARRV-----------LTRDEVPNRRLGTLAAYFRTATRPTHRALDDALA 208 Query: 184 TLALVWLI 191 T+ ++ + Sbjct: 209 TVDVLHGL 216 >gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] Length = 454 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 68/230 (29%), Gaps = 24/230 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63 FV D ET + Q VR E +++ + C P E + I GI Sbjct: 110 FVAVDVET--ANDNWGSICQIGAVRYRDGGET--ASQSWLCTPPPGLEHFAEINISIHGI 165 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A + + F + +I +N++FD R+ D Sbjct: 166 TAADVEGA-MPFATAAAELFDFI---GSDVIVAHNVQFDSSALRSGLLAAGAD------- 214 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + + KL + G HDA D A Sbjct: 215 --------VPTVPLACSLALSRDASKQGVISVANHKLPTVVKHLGGASFTHHDATEDARA 266 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 ++ + ++ + ++ ++ + P++ + Sbjct: 267 AGTIITGLAQRFGHTGSITDLFTSREFSLGRLESAAILPVLRAHTAPTSG 316 >gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 257 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 64/217 (29%), Gaps = 26/217 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 A D T L I Y R N + Sbjct: 183 ALYDTERTAVLFCEISIAGSAWAAGRYLCRRTNNVAN 219 >gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans'] gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans'] Length = 234 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 59/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + +ST F P L PEA+ G Sbjct: 20 VVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 IDPHNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D + + +F AH Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTVLAKACAAAGIAF-----------NSGEAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTERTATLFCELVNR 200 >gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine proteobacterium] Length = 231 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + DR + V + + + + + A + G++ Sbjct: 4 IVLDTETTGFEPSEGDRIVEIGAV---ELFNHLPTGRTYHQYINPERNMPEAAFNVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ F + + +N FD + + Sbjct: 61 EEFLSDKP-IFKNIAQEFIDFIADSK---LVIHNASFDMKFLNAELGWVNRPALPNDQT- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP L L GI++ + H A D Sbjct: 116 ----IDTLAIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157 Query: 183 ATLALVWLIREKKPKL 198 + + + Sbjct: 158 ILAEVYLELVGGRQPD 173 >gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 244 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25] gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25] gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 236 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D+ET G D D+ V + I S++ ++ PE I G+ Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAKINGL 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + G+ E R+ + + ++ + + + + + Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D ++ FS G + +S++L DL + +H A +D A Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211 Query: 184 TLALVWLIREKKPKLFEYLYD 204 L + +K L + Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232 >gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32] Length = 287 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN] gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN] Length = 184 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 31/197 (15%) Query: 5 FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 F ++D ET G R +FAGV D + + ++ E F C + + Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITG+ + ++ + ++ FFS + I +N+ FD + R Sbjct: 59 TKITGLKNEDLVKHP-SFLDQRHKVRDFFSRADANI--AHNLPFDKFMLTCDLARGKLGL 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 D+ V + F +LQ L +V H A Sbjct: 116 EEV----NFPSLDICTVEESARLFGH-------------RMRLQHLYEHYCGPYVQKHRA 158 Query: 178 KADVYATLALVWLIREK 194 DV + + Sbjct: 159 LDDVRLLHEVCKRMGVY 175 >gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39] gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39] Length = 192 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 14/192 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 I D ET G D + + + + + E I + EA I GIT Sbjct: 10 FILDTETTGLD-SKSQIVEVTAI-CAKSGELI-----YSSLVRPQGFIPAEATRIHGITN 62 Query: 66 QKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F I+ ++ N I YN + ++ Sbjct: 63 SDVADAPT----FLDIIYPLSLALRNRTGIIYNADFDSRMFIQSYERNLQISHLDLRSAY 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 + LL+ A+ ++ ++ + + G +L + GI+ + AH A AD Sbjct: 119 FALKHKLLNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQQQGIDISDLTAHRALADCE 178 Query: 183 ATLALVWLIREK 194 T L+ + + Sbjct: 179 MTRRLINAVNGQ 190 >gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] Length = 862 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSEEVHGFSD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G A + +F II +N+ +D N R+ Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL LA I H H+A D+ AT Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASEFPIHHEPTHNAMDDILATA 649 Query: 186 ALVWLIREKK 195 L+ ++ Sbjct: 650 QLLIYAVKEN 659 >gi|260801299|ref|XP_002595533.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae] gi|229280780|gb|EEN51545.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae] Length = 231 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 36/218 (16%) Query: 3 NHFVIYDYETF----GRDVALDRPAQF--AGVRVDRQW-------------EKIESTEVF 43 FV D ET G + + + A VR D+ ++ Sbjct: 19 QTFVFLDLETTDLRTGLEEDEPQVTEISLAAVRRDQLLSGTTVPPGGASLPRIMDKF-TA 77 Query: 44 FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRF 101 +P P+A IT +T Q + V + + + + + P C++ +N F Sbjct: 78 CVRPTHS--IHPKAAEITNLTNQSLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGDWF 135 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D ++ R S G D+L V + + + +L Sbjct: 136 DFPVLKSELRR--------SKTAGLFPKDVLCV----DTMLAMKHLYAGQFRSFSLPRLH 183 Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 + AH A+ DV + +V + +K + Sbjct: 184 ENLFGVAPPPEVAHTAEGDVITMVKIVKKMGAEKIIQW 221 >gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] Length = 235 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 56/206 (27%), Gaps = 29/206 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFIT 61 ++ D ET G + + D V + + I + ++ +P D E V I Sbjct: 41 LIVLDLETTGLNASKDEVIAIGAVAI--EGGVIHLNDQFDLILRRPELDIR---ETVLIH 95 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + E + N I + FD + + Sbjct: 96 GIGPEALTQG----YETQDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKSQLGYTLPHV 151 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + + + L D A G+E H A AD Sbjct: 152 WMD-----------------VAELMPAFFPKATIKGRGLDDWADVFGLEISERHHAAADA 194 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207 T L + K K + Sbjct: 195 LVTAELALIALNKARKNDVKTLKELS 220 >gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 961-5945] gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 244 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640] gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06] Length = 244 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T Q AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|187927567|ref|YP_001898054.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J] gi|187724457|gb|ACD25622.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12J] Length = 216 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 51/183 (27%), Gaps = 14/183 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G DV D VR+ +P + PE++ + + Sbjct: 39 VALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQGEMR--PESICVHRLRN 96 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + GV + + F + ++GY +R + + + Sbjct: 97 RDL-DSGVSIEQAVHTLLHFI--GSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVS 153 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + Y + D + + + +AHDA D Sbjct: 154 ALYYDHQFALLPPYR---------QQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAA 204 Query: 186 ALV 188 Sbjct: 205 LAF 207 >gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 29/189 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V + + P D EA + G++ Sbjct: 4 IVLDTETTGFDPLTGHRIVEIGCVELFNHL-PTGKVYHQYVNPERDM--PEEAFKVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q V F+ + F I+ +N FD + R + S Sbjct: 61 EQFLSDKPV----FAEIVADFMDFIGDAILVIHNAEFDMRFINAELSRLGFQPLPMSRS- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 D + + R + + L L I+ H + H A D Sbjct: 116 ----IDTVAMARKKFPGAQA--------------NLDALCRRFEIDNTHRSFHGALLDSE 157 Query: 183 ATLALVWLI 191 + + Sbjct: 158 LLAEVYLQL 166 >gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 287 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 24/182 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D + + V+ + E+I F + DP A + GI+ Sbjct: 106 VFLDTETTGLDAG-AQALEIG--LVNARGERI-----FETRLKPTVAIDPAAAAVHGISD 157 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +R + ++++ ++ R F + ++ Sbjct: 158 EDLVRAP-SWPDIAQQLQ------------HHIGRRPLVIFNAEFDTRILKQTAAAHNDP 204 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 S D L V + G P+ G S ++ A AH A D T Sbjct: 205 ASWLDSLTV--YCAMWLAAGYYGPTNRYGTISLS-GAVSQAGLSWIGEAHSAVTDAVMTA 261 Query: 186 AL 187 + Sbjct: 262 QV 263 >gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] Length = 235 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G DR V+++ E + + P D P EA I Sbjct: 13 KKRVIVFDTETTGILP-YDRIITLGAVKIEGD-ELLTQSLYLIFDPRKDSSPQAEA--IH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + E + I ++FS + + +N +FD +Y + F + D Sbjct: 69 GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDIHYIQREFRKAEVDML--- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180 + ++ R ++ S KL G H A D Sbjct: 123 ---DQPVYCTMEGARRLWRGD--------------SAKLDHCLAKIGLARTGYRHGALED 165 Query: 181 VYATLALVWLIREKKPK 197 Y T L + Sbjct: 166 AYLTAGLYLHQQGVAKP 182 >gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056] Length = 814 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 32/197 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 MT + + + D E G + + Q + ++ E D Sbjct: 1 MTQNDYKYAVVDLEATGTG-SSAKIIQIGIALI-ENGIITKTYET---DVNPHEELDEHI 55 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ R ++ + +++ I +N++FD + +D Sbjct: 56 KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R D +++ + Y + L +L I NAH A Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCGLLDISLENAHTA 151 Query: 178 KADVYATLALVWLIREK 194 AD AT L I++K Sbjct: 152 LADAQATAQLFLKIQDK 168 >gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7] Length = 287 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 62/218 (28%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ D +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYISD-----LTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E +++ F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQKLRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + +Q + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSQCANTLIKRPPR 260 >gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158] Length = 224 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V ++D + + + T F +P + EA+ G Sbjct: 22 VVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLAEALAFNG 81 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N ++ +N FD + R Sbjct: 82 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A G+ A Sbjct: 142 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACNAAGMSFDSAQA 182 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 183 HSALYDTLQTADLFCELVNR 202 >gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1] gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1] Length = 236 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 71/228 (31%), Gaps = 26/228 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++D ET G DV DR A + +D + A I Sbjct: 5 DKIMVFDTETSGVDVENDRIVT-AFIGLMDPDGTMT-EFHEWL--IDPGIPIPEGASDIH 60 Query: 62 GITPQKALRDGVVEAE-FSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 GIT +KA +G + + I S N ++ N R + + Sbjct: 61 GITTEKAHAEGRKDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVGIKN 120 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 +R D + + +Y F S KL DLA G+ NAHD Sbjct: 121 FRAPN----VVLDTFVIDKKLYTFR------------KGSRKLVDLARIYGVPVEENAHD 164 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 A+AD + + + L ++ K ++ Sbjct: 165 AQADCRMAGRVTLKQLQHEWLAPLTLAQIHHRQIKNKADQAASLQAYF 212 >gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275] gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] Length = 244 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 MT +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|254672653|emb|CBA06469.1| oligoribonuclease [Neisseria meningitidis alpha275] Length = 215 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 32 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 92 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151 Query: 115 YDSYRW 120 + Sbjct: 152 NYFHYR 157 >gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] Length = 265 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + + + +++ +I E F P +TGI Sbjct: 73 FCVVDIETSGG-INSGQIIEIGALKL-LDGVEIGRFESFVYAPN----VPENISELTGIY 126 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + +N++FD + R + Sbjct: 127 AADLAKAPS----LANVLEKFKLFLGDSVFVAHNVKFDYDFISISLERLGFGMLLN---- 178 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +D+ R R + + L L GI + + H A D A Sbjct: 179 --RRICTIDLAR--------------RTIISQKYGLGTLKELLGISNAH-HRALNDAIAA 221 Query: 185 LALVWLI 191 + Sbjct: 222 AEIFKEC 228 >gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 236 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 19/205 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D+ET G D D+ V + I S++ ++ PE I G+ Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAKINGL 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + G+ E R+ + + ++ + + + + + Sbjct: 109 TPQDLAK-GLPLDEGMNRLLKRIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D ++ FS G + +S++L DL + +H A +D A Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208 L + +K L + + Sbjct: 212 CAELFLVQSKKLTALPDVTLRQLTR 236 >gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis 11-1] gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis 11-1] Length = 247 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V + + F D + A +TG+T Sbjct: 4 IILDTETTGLEWKKGNRVVEIGCVEL-LERRPSGR--NFHRYLKPDCDFEAGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E E ++ I +N FD + R ++ + Sbjct: 61 LEFLADKPAFE-EIVDEFLEYIDGAELII---HNAAFDLGFLDYELSRCG--AHLGRIVD 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 S D L + R Y + L L G++ H H A D Sbjct: 115 RCSVVDTLLLARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILADVYIALTSGQEEI 176 >gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16] gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16] Length = 195 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 29/190 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT ++ +D ET + A DR + V V + +E + + V + Sbjct: 1 MTGRYIAFDVET--PNSANDRISAIG-VTVVERGAVVEQHDYL---VNPETRFASFNVAL 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGITP+ + + + F ++ +N FD Y Sbjct: 55 TGITPEMVADKPA-FPQLWQELEPIFDSG---LLIAHNAPFDMSVLAK-----CLRDYGI 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W S + R + KL L G+E + H A +D Sbjct: 106 RWRPSVSYACTCQMSR-------------RLLPQLPNHKLNTLCDFLGLELDH-HRAGSD 151 Query: 181 VYATLALVWL 190 A ++ Sbjct: 152 SLACGEILLH 161 >gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 240 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 6/111 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R V R E + E +AV + GI+ ++ Sbjct: 11 FDLETTGTDPREARIVT-GAVIEVRAGEPLGRREWLA---DPGVPIPEDAVAVHGISGER 66 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A +G + + I + + N FD R Sbjct: 67 AAAEGRPADQVADAIAGVLTAYWQTGVPVVAYNAAFDLTLLSAELRRYGLP 117 >gi|220980061|emb|CAP72253.1| Hypothetical protein [Escherichia coli LF82] gi|323934293|gb|EGB30715.1| exonuclease [Escherichia coli E1520] Length = 185 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 23/196 (11%) Query: 2 TNHFVI-YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 V D E+ G D +A + + A R + E + + DP+A Sbjct: 1 MTTIVAGIDIESTGLDFLAGHKIIEIAITRY--ELETQRHIDSLEMRFNPRRNIDPKAQA 58 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ ++ + ++ + I + + + +N FD + R+ F Sbjct: 59 VHGISLEQLAAEPLLSNH-ASEIGAYMEACSA-WVAHNGEAFDIPFIRHEFSGYGVRL-- 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++D M + W + D + +L +H AH A Sbjct: 115 -------PDVPVIDTMLSG--------LWATEDGKRPRLEELAFSLGFIYDHAKAHSALY 159 Query: 180 DVYATLALVWLIREKK 195 D + + R K Sbjct: 160 DTNLMMQCFFKARNKY 175 >gi|309801335|ref|ZP_07695464.1| exonuclease [Bifidobacterium dentium JCVIHMP022] gi|308222224|gb|EFO78507.1| exonuclease [Bifidobacterium dentium JCVIHMP022] Length = 187 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/205 (10%), Positives = 47/205 (22%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M D ET G + + V + F Sbjct: 1 MM-----LDTETTGLHPEEGATIIEIGALLVTP-GNENARP-RFEQLVDPQRPLPEFISR 53 Query: 60 ITGITPQKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGI+ +A + + + + +N FD + + D Sbjct: 54 LTGISDGMLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPD 113 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + ++ DL + I V H Sbjct: 114 ANEF-----------------DCRWLCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHR 156 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A +D + + + + Sbjct: 157 ALSDAIQEQMIYRALCREASMRGRW 181 >gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 237 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57 +I D ET G + R + V E I+ F + A Sbjct: 7 IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + L + + + + I+ +N FD + Sbjct: 61 LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175 ++ S D L + R ++ + L L H N H Sbjct: 117 KINTF---CSIIDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 A D Y L L+ + LF K +KL + Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204 >gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501] gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501] gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166] Length = 235 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 24/202 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V+ D ET G + D V ++ I+ ++ F C + E+V I Sbjct: 37 QQRLVVLDLETTGLHLKRDLVIAIGAVVIEDGA--IDYSQQFECTLCRQVKVN-ESVLIH 93 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P + G+ AE +F + ++ ++ + + + R + +S Sbjct: 94 GIAPSELAN-GLPPAEALLSFMEF--AAGSIVLAFH-----APFDQRMLGRALKNELGYS 145 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +N L M A G L I H+A AD Sbjct: 146 LENSFLDVADLAPMLFPEAMIHRG-------------SLDHWLDYFNIHIPQRHNASADA 192 Query: 182 YATLALVWLIREKKPKLFEYLY 203 AT + ++ + ++ + Sbjct: 193 MATAEIALILLNRAQRIGLTTF 214 >gi|313114851|ref|ZP_07800350.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255] gi|310622801|gb|EFQ06257.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255] Length = 329 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 63/259 (24%), Gaps = 34/259 (13%) Query: 1 MTNHFVIYDYE--------TF---GRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 M + V++D E TF G + V++D +++ + +P Sbjct: 1 MPRNLVLFDLEWNIGYQPYTFNYHGVQQTFRGEIVEIGAVKIDEDANVLDTFSIHL-RPR 59 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 +TG+T G + + +F D + Sbjct: 60 IFRKLQHHIAKVTGLTQADL-DKGEP---IVQGLRRFMQWCGPDAEFAEWGMDDVPVLKQ 115 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 Y D + + I+ L+ + G Sbjct: 116 NLYLCNIDESKPT----------------IWYDLQQVFLREHPRKEGEGMTLESVVTRLG 159 Query: 169 IEHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 + HDA +D T + ++ + + + L + H Sbjct: 160 LPMERQFHDALSDTLYTADVCRMLDLRAGLAAYPTEEESLRASLCPAPGDYRDFEVFHGY 219 Query: 228 GMFGASRSNTALIAPVAWH 246 R++ + Sbjct: 220 VEQYTWRTDPKIYIMSCPE 238 >gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] Length = 862 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERF---INPG-VPVGQSEEVHGFSD 550 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G A + +F II +N+ +D N R+ Sbjct: 551 AYLKEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D LD+ R Y + KL LA I H H+A D+ AT Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASEFPINHEPTHNAMDDILATS 649 Query: 186 ALVWLIREKK 195 L+ ++ Sbjct: 650 QLLIYAVKEN 659 >gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38] gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38] Length = 287 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2] Length = 229 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 26/217 (11%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D D A I GI+ Sbjct: 7 IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPFD--AYRIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F S I +N FD + + + Sbjct: 64 GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRAEIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 ++ D L + R+++ + + L L +++ H A D Sbjct: 118 LSNAIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + F+ + N L Sbjct: 164 LLAEVYVELTGGRQSAFKMVDKSVETNNLATNQVNNK 200 >gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 237 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57 +I D ET G + R + V E I+ F + A Sbjct: 7 IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + L + + + + I+ +N FD + Sbjct: 61 LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175 ++ S D L + R ++ + L L H N H Sbjct: 117 KINTF---CSIVDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 A D Y L L+ + LF K +KL + Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204 >gi|227833455|ref|YP_002835162.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC 700975] gi|262184446|ref|ZP_06043867.1| hypothetical protein CaurA7_10673 [Corynebacterium aurimucosum ATCC 700975] gi|227454471|gb|ACP33224.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC 700975] Length = 461 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 24/225 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITGI 63 F D ET + Q VR R E+ ES + C P D + I GI Sbjct: 109 FTAVDVET--ANDNWGSVCQIGAVRF-RDGEETESR-TWLCTPPPGLEHFDKVNISIHGI 164 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + A+ + + +F T + +N +FD R+ + Sbjct: 165 TAEDVADA-SPFADAAAELFEFL---GTDTLVAHNAQFDSTALRSGLKKADAP------- 213 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +R + + + + KL +A G E H+A AD A Sbjct: 214 --------VPEVRLACSLALARDASRAGVIDVANHKLPTVASFLGAEDFRHHEATADARA 265 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 +V + ++ + ++ + +++ P++ + Sbjct: 266 AGEIVSALAQRFGHSGSIEDLFTTRDFALGTLSEESVIPVLRANT 310 >gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C] gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C] gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] Length = 229 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 26/200 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA I GI+ Sbjct: 7 IILDTETTGLDPKGGHRIVEIGAIEM-VNKVLTGRHFHFYLNPERDMPF--EAYRIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + + +N FD + + + Sbjct: 64 GEFLKDKPLFHT-IADDFLEFIADSK---LVIHNAPFDVKFLNHEL--SLLKRAEIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 D L + R+++ + + L L +++ H A D Sbjct: 118 LEHAIDTLVMARSMFPG--------------SKYSLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYL 202 + + + F+ L Sbjct: 164 LLAEVYVELTGGRQSAFKML 183 >gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] Length = 818 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 27/183 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++D ET G V+ D + A +R+ +K + + E+ I G + Sbjct: 464 TVFDVETTGFSVSQDEVVEIAAIRL-VDGKKQARFHAYITN----TVSVGESERIHGHSD 518 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +G +F ++ ++G+N + + W Sbjct: 519 RFLAENGRNAKHVFGEFFEFV--GDSLLVGHNVGFDIKMVTAQAQKAGVSYPKKLQW--- 573 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D ++ +R + + L+ LA + H+ +H A DV T+ Sbjct: 574 -----------------EDTLELANRFIESERYSLEVLAEHLNLTHLPSHKAMDDVETTI 616 Query: 186 ALV 188 L+ Sbjct: 617 DLL 619 >gi|326774035|ref|ZP_08233317.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636174|gb|EGE37078.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 259 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 19/196 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G D + DR A V + +S + A + G+T Sbjct: 27 FDTETTGVDPSGDRLVTAALVWRAAPRADGVRPQSVATWLA--DPGVEIPEAAAAVHGVT 84 Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++A +G E + + ++ + N +D R+ Sbjct: 85 TERARAEGRSVTEVLAEVSEHLVAAMAAGTPVVAFNASYDLTLMEAELARHGLP--TMHS 142 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADV 181 G + D + A +L DL G+ A H A+ DV Sbjct: 143 RLGRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVRVDEALHTAEVDV 193 Query: 182 YATLALVWLIREKKPK 197 ATL ++ + P+ Sbjct: 194 AATLDVLEALTAAHPQ 209 >gi|240142188|ref|YP_002966698.1| putative Exonuclease [Methylobacterium extorquens AM1] gi|240012132|gb|ACS43357.1| putative Exonuclease [Methylobacterium extorquens AM1] Length = 190 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 54/194 (27%), Gaps = 28/194 (14%) Query: 8 YDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +D ET G R + V ++ F +P +P E Sbjct: 5 FDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFL-RPDGFTIP-MEMRD 62 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT A R+G+ AE R+ +F + + + + FD D + Sbjct: 63 LHGITVSAARREGLPAAEAFGRLKEFLAGAGRIAV--HFVPFDATMVAIEIAHGAPDPFG 120 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + + +R + D + A G H A Sbjct: 121 PGREFACTSAAAGLAVRGEGHLALD----------------EACAGILGRPPRRHHRALP 164 Query: 180 DVYATLALVWLIRE 193 D + L + Sbjct: 165 DALDAMDLAIALER 178 >gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] Length = 164 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 28/192 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N FV D+ET + V V E +++ KPA +Y P + Sbjct: 1 MNTFVALDFET--ANQYRSSVCSIGLVFV-ENNEIVDTYYQLI-KPAPNY-YSPFCTQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + + E + I + +N FD+ R + + Sbjct: 56 GLSQYDTEKAPL-FPEVWKEILPKIKD---LPLVAHNSMFDEGCLREVLAYYALPQHTNP 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 F + KL ++ G + H A AD Sbjct: 112 -------------------FFCTLRAARKSLPQLVNHKLDTVSAYFGFDLKQHHHALADA 152 Query: 182 YATLALVWLIRE 193 A + + + Sbjct: 153 EACAHIALELFK 164 >gi|225022753|ref|ZP_03711945.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii ATCC 33806] gi|224944474|gb|EEG25683.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii ATCC 33806] Length = 232 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 44/187 (23%), Gaps = 30/187 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A V +D + A + GIT + Sbjct: 18 FDLETTSANPFEARIVTSALVHIDSGG---AHPQELLA--DPGVPIPEAATKVHGITTEY 72 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A G A+ +I YN + Sbjct: 73 AREHGRPHADVLAETIATIKKAWADGYTLIVYNASYDLTVLHSLEPGFLITGPVYDPY-- 130 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D + Y L L + NAH+A +D A Sbjct: 131 ------VMDKLLDPY--------------RRGKRTLTALCEEYQVRLENAHEATSDALAA 170 Query: 185 LALVWLI 191 + W Sbjct: 171 ARIAWKQ 177 >gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori Lithuania75] Length = 287 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 260 >gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] Length = 247 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 29/189 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G L+ + A VR++ + F P P +TGIT Sbjct: 74 VVLDLETTGLAPGLNEIIEVALVRLEGERRV-----AFQSLARPRRPPSPFIQRLTGITL 128 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + +E E R + + N FD + R + Sbjct: 129 EELEKAPPLE-EVLFRAYPLLE---GATLVIQNASFDLGFLRPALGELGLE--------- 175 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 G + L L+ + H A DV TL Sbjct: 176 -----------LENPVVDSIRLSKRAMRGLRRYGLDALSEVLELAPRAEHRALLDVERTL 224 Query: 186 ALVWLIREK 194 A+V+ + Sbjct: 225 AVVYEVYYM 233 >gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202] gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202] gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60] Length = 254 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V R++ + + F P + + PEA+ G Sbjct: 53 VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSPEALAFNG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E I + N ++ +N FD + R Sbjct: 113 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAERAGLK 172 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + L+ + AH Sbjct: 173 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LSAEIPFDSAQAHS 215 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 216 ALYDTQQTATLFCELVNR 233 >gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] Length = 244 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MIQRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176 >gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia K279a] gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas maltophilia K279a] Length = 243 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V +++ + + D + A +TG+T Sbjct: 4 IILDTETTGLEWKKGNRIVEIGCV---ELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EF++ +F + + + +N FD + N + + Sbjct: 61 LEFLDDKP----EFAQIADEFLAFIDGAELIIHNAAFDLGFLDNEL--SLLGPQYGKITD 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R + + L L G++ H H D Sbjct: 115 RCTVIDTLAMARERFPGQRN--------------SLDALCKRLGVDNSHRALHGGLLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILGDVYIALTSGQEEI 176 >gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium pseudogenitalium ATCC 33035] gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET + R A VR+D + + EA + GIT Sbjct: 9 LAFDLETTSANPKEARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQEATNVHGITT 63 Query: 66 QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +KA +G E + + +I YN Sbjct: 64 EKARAEGRPHEEVLKDTIEAIKAAWEDGLTLIVYNAAFDLTVL----------------- 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + + + Y +W L + G+E NAH+A AD Sbjct: 107 RSLTGDFTVTGPVYDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 161 Query: 183 ATLALVWLIREKKPKLFEYL 202 A + W + + Sbjct: 162 AAARVAWKQVRQHYPNLAQM 181 >gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum] Length = 232 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 59/204 (28%), Gaps = 22/204 (10%) Query: 3 NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKP-----------A 48 FV +D ET G R +F V V I CK Sbjct: 5 KTFVFFDLETTGLPKFEENRTRITEFCAVAVRADH--IGLQTAQKCKLPRVQSKLSLCFN 62 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYS 106 P+A +TG++ + ++ I + + C++ +N FD Sbjct: 63 PARAICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPIL 122 Query: 107 RNIFYRNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA- 164 R + + + +D + + TS+ L + Sbjct: 123 RAEIENTGENLPEDILCLDSIIAFKEIDTLEGGAVI--NQPNEIKIRKIDTSYNLGHVFK 180 Query: 165 LANGIEHVNAHDAKADVYATLALV 188 +NAH A+ DV LA Sbjct: 181 RRLSKRPLNAHGAEGDVNMLLACA 204 >gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707] gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707] Length = 228 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 23/195 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET GRD R + V V + + +A + GI+ Sbjct: 9 ICAFDLETTGRDPLSARIVTGSVVTVGGEGHR-----SRNWIVDPGVEIPVDAAAVHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +A G A R I + ++ N +D R + Sbjct: 64 TAQARERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPP----- 118 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++ Y + + D L L G+ AH+A++D Sbjct: 119 ------LSGYGLVVDPYVIDREMDR-----DRRGKRTLGALCEHYGVVLAAAHEAESDAL 167 Query: 183 ATLALVWLIREKKPK 197 A L ++ + P Sbjct: 168 AAAELARILPRRFPH 182 >gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 223 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 28/219 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D+ + + T F +P + + +P A+ G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAAAERCSLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213 A D T L + + + + + + + Sbjct: 183 ALYDTNQTALLFCELVNRWKRLGGWPIALEENSLEDVSA 221 >gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 241 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 60/190 (31%), Gaps = 18/190 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V EV + A I G+T Sbjct: 12 FDTETTGIDVEQDRIVSAALVVQRGAGSL---PEVRRWLVSPGIPVPEAASAIHGLTDSH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R G A + + + T ++ N FD R+ Sbjct: 69 LQRHGRWPAPVVDEVARALAEQAARGTPVVVMNAP-FDLTLLDRELKRH----------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N+ +R++ P + L DL G+E AHDA AD A+ Sbjct: 117 RNASLSTYVSLRSLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVELTGAHDAAADATAS 176 Query: 185 LALVWLIREK 194 L +V + + Sbjct: 177 LEVVRAVGRR 186 >gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang] gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei str. Zhang] Length = 180 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 28/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET + A V V + + ++S D + + I GIT Sbjct: 3 FIAMDFET--ANRKRASACSLALVVVQQN-KVVDSFYTL---INPQMQFDAQNIHIHGIT 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + I F I+ +N FD R R Sbjct: 57 PEMVQDQP-TFDQVWPHIQMF--YTPGRIVTAHNAPFDVSVMRLTLDRYGI--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ ++D ++ F P + +L ++ A I + H+A AD YA Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNALADSYAC 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 ++ E + +K Sbjct: 155 ARILIAENEHFGEARTKSMMKLSKA 179 >gi|306823007|ref|ZP_07456383.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC 27679] gi|304553639|gb|EFM41550.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC 27679] Length = 186 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 23/198 (11%) Query: 8 YDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G + + V + F +TGI+ Sbjct: 2 LDTETTGLHPEEGATIIEIGALLVTP-GNENARP-RFEQLVDPQRPLPEFISRLTGISDG 59 Query: 67 KALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +A + + + + +N FD + + D+ + Sbjct: 60 MLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEF--- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + ++ DL + I V H A +D Sbjct: 117 --------------DCRWLCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHRALSDAIQ 162 Query: 184 TLALVWLIREKKPKLFEY 201 + + + + Sbjct: 163 EQMIYRALCREASMRGRW 180 >gi|220936287|ref|YP_002515186.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7] gi|219997597|gb|ACL74199.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7] Length = 240 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 48/189 (25%), Gaps = 12/189 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D V D +I E ++ ++ IT + Sbjct: 53 LDLETTGMDAERDVIVSIGIVPFD--LRRIRPAEGYYWVVKPPRPLSEASIKFHRITHSE 110 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + + + ++ + + + R R Sbjct: 111 VAAAP----DLDAVLDEVLAALAGRVVVVHYRAIERPFMDAAVMR------RRGERCLFP 160 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D + + S +L D G+ ++H AK D AT L Sbjct: 161 VIDTMSLEARQQRGGLMQRIKGFFGVRPPSIRLADSRARYGLPAYSSHHAKVDAMATAEL 220 Query: 188 VWLIREKKP 196 + Sbjct: 221 FLAQVARHY 229 >gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] - Buchnera sp. (strain APS) gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 237 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57 +I D ET G + R + V E I+ F + A Sbjct: 7 IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + L + + + + I+ +N FD + Sbjct: 61 LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175 ++ S D L + R ++ + L L H N H Sbjct: 117 KINTF---CSIIDTLKIARELFPGKKNT--------------LDALCTRYKINKSHRNLH 159 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 A D Y L L+ + LF K +KL + Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204 >gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329] Length = 236 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D+ET G D D+ V + I S++ ++ PE I G+ Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAQINGL 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + G+ E R+ + + ++ + + + + + Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D ++ FS G + +S++L DL + +H A +D A Sbjct: 157 VEDFPAYFVDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211 Query: 184 TLALVWLIREKKPKLFEYLYD 204 L + +K L + Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232 >gi|56460528|ref|YP_155809.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR] gi|56179538|gb|AAV82260.1| 3'-5' exonuclease/DnaQ family enzyme [Idiomarina loihiensis L2TR] Length = 248 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 15/191 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET G D A + + + + + KP E+V I GIT Sbjct: 59 VAVDFETTGLDPEQHGIVSIAAIPMTTERILFSEAKSWVVKPRRSL--TDESVVIHGITH 116 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E I + + + + + + + +++ ++ + Sbjct: 117 SEIEHAPDLE----SIIDELLELVAGKVWVVHYHGIERPFLQRGIKERLHENIQFPLIDT 172 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADVYAT 184 W S +L D + H+A D A Sbjct: 173 MEI--------EARFHRKPLSFWQKLLGKKPESIRLADSRTRYNLPFYPPHNALTDALAC 224 Query: 185 LALVWLIREKK 195 L+ Sbjct: 225 AELLQAQIAYH 235 >gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] Length = 305 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 80/257 (31%), Gaps = 36/257 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++V+ D+ET + + V+V + ++S + D +TGI Sbjct: 2 NYVVIDFET--ANSSRSSACSLGMVKV-HEGNIVDSFYSL---INPEDDFDLFNTSLTGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E I F S +I + FD RN+ + S+ Sbjct: 56 TQDMVCNSP-TFNELWPDILSFISDH---MIVAHYASFDLSVLRNVLLKYNIPIPTLSY- 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +++L +A IE N H A D +A Sbjct: 111 ------------------CCTRNLSKKTFPNLINYRLDTVASYLDIEF-NHHHAFEDAHA 151 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T L+ I + + + K+ + TP ++ + +S ++ I P Sbjct: 152 TAVLLNHIFIQNTTSSFEDLHSKLGLTIGKITSS-SYTPSGYIKCVKKSSNLSSKDIVPT 210 Query: 244 A-----WHPRYKDSVIG 255 HP Y +VI Sbjct: 211 TSSFDDSHPLYDMTVIF 227 >gi|325103944|ref|YP_004273598.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] gi|324972792|gb|ADY51776.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] Length = 315 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 28/225 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +D E G ++ +DR + + ++++ + EV + E I Sbjct: 5 LKRPLAFFDLEATGVNLGIDRIVEISILKINVDGSE----EVKTHRINPTIPIPYEVSII 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + + ++ I F + + GYN+ +FD F + + Sbjct: 61 HGIYDKDIENEP-TFKDLAQEIADFIGDAD--LAGYNSNKFDIPMLMEEFLKAGVN---- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ + + + ++K E VNAH A+AD Sbjct: 114 -----------FDLDNRHFVDVQNIFHQMEQRTLKAAYKF-----YCDKEIVNAHSAEAD 157 Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 AT ++ +++ + +E +K + + + N T L Sbjct: 158 TRATYEVLLAQLKKYEGHDWEDRGGKISKPVVNDVPALHNFTNLT 202 >gi|311111764|ref|YP_003982986.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931] gi|310943258|gb|ADP39552.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931] Length = 230 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 48/178 (26%), Gaps = 24/178 (13%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITGITP 65 +D ET G DV R + + ++ A + GIT Sbjct: 11 FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLA-----NPGIEIPEGAASVHGITT 65 Query: 66 QKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + A G + + + + N +D + R Sbjct: 66 EYARSHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNI-------- 117 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + A + P I + KL+ L + + NAH +KAD Sbjct: 118 -------AHGELPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHDVVLENAHTSKADA 168 >gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A] Length = 287 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 58/218 (26%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQVRGGG-IINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260 >gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str. Madrid E] gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii] gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22] Length = 229 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 26/202 (12%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA I GI+ Sbjct: 7 IILDTETTGLDPQQGHRIVEIGAIEM-VNKVLTGKHFHFYINPERDMPF--EAYKIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + I +N FD + + + + Sbjct: 64 GEFLKDKPL-FKTIANDFLKFIADSTLII---HNAPFDIKFLNHEL--SLLKRTEIKFLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R ++ + + L L +++ H A D Sbjct: 118 LTNTIDTLVMARNMFPGA--------------RYSLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 + + + F+ + Sbjct: 164 LLAEVYVALTGGRQSTFKMINK 185 >gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str. Sheeba] gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba] Length = 282 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 63/218 (28%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + I E K DY+ D +TGI Sbjct: 68 FSFIDLETTGSCPLKHEILEIGAVQV-SGGKIINRFETLVKVKSVPDYISD-----LTGI 121 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 122 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 174 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD+ R + L L G +H A AD A Sbjct: 175 ---LKLCTLDLSRRAILSM--------------RYSLSFLKELLGFGIEVSHRAYADALA 217 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + ++ Sbjct: 218 SYKLFEICLLNLPNYVKTTIDLIDFSKCANTLIKRSPR 255 >gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 80 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +++D ET G + DR + GV + ++ + F P+A+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61 Query: 66 QKALRDGVVEAEFSRRIHQF 85 ++ L V AE +F Sbjct: 62 EQLLDKPV-FAEILDEFLEF 80 >gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] Length = 203 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 20/192 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V +D ET G + +D A V++ + F D + + + I G Sbjct: 32 NEYVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNE--RFNVIVKPDREINEDVIKIHG 89 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + G+ E R F + ++GY ++ + Sbjct: 90 LRKKDL-ESGIPIEEAVDRFVHFI--GSRPLVGYYLEFDVAMINKYFKKLSG-------- 138 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + + G + + I HDA D Sbjct: 139 -------TTLPNKQIEVSALYYDYKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAI 191 Query: 183 ATLALVWLIREK 194 T + ++ K Sbjct: 192 MTALIFLKLKNK 203 >gi|34557013|ref|NP_906828.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM 1740] gi|34482728|emb|CAE09728.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Wolinella succinogenes] Length = 203 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +N V +D ET G D D A V++ F KP + D ++ I Sbjct: 28 SNELVAFDCETTGLDPKKDEIISLAAVKIRDNKILTSEKLQLFVKPKGEINID--SIKIH 85 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I G+ E + R F N ++GY + + R + + Sbjct: 86 HIRACDVSN-GITSEEAALRFLDFL--GNRPLVGYY-----LEFDVALINRIIHPLLGIT 137 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + +G +L+ + + + HDA D Sbjct: 138 LPQKMIEVSAI----------YYDKKIGLIPEGHVDLRLRSILRDLKLPELTQHDALGDA 187 Query: 182 YATLALVWLIREKKP 196 + + + + + Sbjct: 188 ITSALIYLKLTQNQK 202 >gi|87118535|ref|ZP_01074434.1| exonuclease [Marinomonas sp. MED121] gi|86166169|gb|EAQ67435.1| exonuclease [Marinomonas sp. MED121] Length = 230 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 19/191 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G D DR V + + D+ D + V I IT Sbjct: 38 YLVLDMETTGLDATKDRVISLGWVLI-KNGAI--KLSSARHILLDNGPVDEKTVAIHMIT 94 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q G + R + Q + ++ ++ + + Sbjct: 95 DQDISELGRNPSVAMRYLRQLL--LDKVLVVHHAPIEQAFLEKLWQAHKLNP-------- 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L VM A D + +F+L + G+ HDA D AT Sbjct: 145 ------LTQVMLDTLAMERDTQMRKQYMLTSDAFRLGECRKRYGLPDYQGHDALGDAQAT 198 Query: 185 LALVWLIREKK 195 L+ Sbjct: 199 AELLLAQLNHA 209 >gi|260769996|ref|ZP_05878929.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260615334|gb|EEX40520.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|315182520|gb|ADT89433.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218] Length = 238 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 19/189 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + +D+ET G D D+ V + + ++E F + + ++ I IT Sbjct: 53 LLAFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVRHPEFV--TADSAVINHIT 110 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ L GV E R+ + + + + ++ + R + + W Sbjct: 111 PQ-VLAHGVTLDEAMDRLFGQLA--GKIALVHGACIERAFVAQYMRERFAIEHFPCVW-- 165 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + + + + + TSF+L D+ + NAH A D AT Sbjct: 166 ----VDTLQI--------EKQMTYAGKTECGTSFQLNDVRTRYALPQYNAHSAAIDALAT 213 Query: 185 LALVWLIRE 193 L + Sbjct: 214 AELFTAQMK 222 >gi|269140407|ref|YP_003297108.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202] gi|267986068|gb|ACY85897.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202] Length = 199 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 23/190 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G A + D+ + I GIT + Sbjct: 32 ILDTETTGV-KENAEIVSAAII--DQDGTVL--FHSLIKPVNP---ITEITTAIHGITNE 83 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 AE I + NT + N +FD ++ + Sbjct: 84 MVAEKP-TWAEVHDEIARIL---NTAPLVVYNAQFDMRMMAQSAAKHGLPPIVVN----- 134 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKADVYATL 185 +V A+ A++ QW L ++ N H A DV TL Sbjct: 135 -----TEVNCAMEAYAHFYGQWNEEHQSYRWQSLSMAMFQQDVDDDNIPHSALGDVNRTL 189 Query: 186 ALVWLIREKK 195 AL+ + + Sbjct: 190 ALMRSMVKAD 199 >gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 236 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D+ET G D D+ V + I S++ ++ PE I G+ Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAQINGL 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TPQ + G+ E R+ + + ++ + + + + + Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D ++ FS G + +S++L DL + +H A +D A Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211 Query: 184 TLALVWLIREKKPKLFEYLYD 204 L + +K L + Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232 >gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 241 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 47/166 (28%), Gaps = 18/166 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V EV + A I G+T Sbjct: 12 FDTETTGIDVEHDRIVSAALVVQRGAGSL---PEVRRWLVSPGIPVPQAATEIHGLTDTH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G A + + + T ++ N FD R+ Sbjct: 69 LQQHGRWPAPVMDEVARALAEQTARGTPVVVMNAP-FDLTLLDRELKRH----------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 N+ +R++ P + L DL G+E Sbjct: 117 RNATLATYLSLRSLSVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVE 162 >gi|72381899|ref|YP_291254.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL2A] gi|72001749|gb|AAZ57551.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL2A] Length = 292 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 29/192 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +I D ET G D D + + + + + + + F + + A I Sbjct: 65 PENILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSF---LLPVEINN--AEKIN 119 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P + R +E + V N +I +N FD Sbjct: 120 NI-PAEITRLPQPLSEAIKYFESLVRVSN--VIVAHNSEFDK------------------ 158 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + S D I WP+ T ++DLALA G+ NAH A D Sbjct: 159 ---KWFGLKKLPQIEKPWICSMDDITWPADRQLKTRPSVRDLALAYGVPVWNAHRALTDC 215 Query: 182 YATLALVWLIRE 193 + E Sbjct: 216 IYLAEVFIRCSE 227 >gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] Length = 817 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 57/394 (14%), Positives = 107/394 (27%), Gaps = 46/394 (11%) Query: 2 TNHFVIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + I D E G + + Q V V +S E D Sbjct: 5 KRKYAIVDLEATSAGSNA---KIIQVGIVIV-EDGVITQSYET---DVNPHERLDEHIKQ 57 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG+T + + EF++ + F + + +N++FD + ++ Sbjct: 58 LTGLTDARLRKAP----EFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFE--- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R D +++ + Y + L LA IE +AH A A Sbjct: 111 ----LTTPRIDTVELSQIFYPTLE-------------RYNLGALAAELQIELHHAHSALA 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 D AT L+ +REK L L + + + S +F S Sbjct: 154 DAMATAQLLLKVREKIASLPRGLIENLLSMADCLIYESRLLIEDALEDSSLFLPSHLVEI 213 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 H Y S + +L+ L + E + + + Sbjct: 214 -------HGLYLRKQQQFLESRHLSEQFELNMQLLGMEAYPEQSEFAAYIEESLHQ---- 262 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 P + + + + + + + L+D+ K Q Sbjct: 263 PLPSFIEAPTGIGKTYAYLLTLLAKTSKRILVSVPTKILQDQIMKKEGKTIQELFQIPFH 322 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392 L + L+T + Sbjct: 323 SLKSPK-DYIQLDKFYETLQTDSDNRMIRRFKMQ 355 >gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM 45100] Length = 226 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 30/172 (17%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A + + + + + E+ +A + GIT + Sbjct: 16 FDLETTGTDPKTCRIVTSAMISI--EGRERKDQELLA---DPGVEIPEQATAVHGITTEY 70 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G E + + ++ YN S+ Sbjct: 71 ARENGSPHDEVLAQTIETIREAWQRGATLVVYNAPYDLSVLRALE----------PSFTV 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +D L V RA+ + +L+++ GIE NAH+ Sbjct: 121 DGLVFDPLVVDRAMDPYR------------KGKRRLENVCEHYGIELTNAHE 160 >gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] Length = 272 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 31/222 (13%) Query: 6 VIYDYETFGRDVAL----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +I D ET G DR +FAG+ + + EA + Sbjct: 10 IILDTETTGLYANAAENPDRLIEFAGLEM-MNRQLTGR--NLHLLIHPQREISEEATAVH 66 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + + + A+ +++I F I +N +FD + F R Sbjct: 67 NITLSQLVDKP-IFAQVAQQIFDFIKGAELII---HNAKFDVGFLNAEFARVGLP----- 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 N + ++ D + L L G++ H A Sbjct: 118 --NVETICEITDTLEMAKNLYHGQKN-----------SLDALCNRLGVDRSKRVFHGALI 164 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 D + + + L D +++ +++ Sbjct: 165 DCELLSEVYLGMTRGQFSLMADWEDEDENSEINQIVVQHTFQ 206 >gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str. Corby] gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str. Corby] gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] Length = 233 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 33/215 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 VI D ET G R + + E I+ F D A + Sbjct: 4 VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + + QF I +N FD + + + + Sbjct: 58 GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 ++ D L + R + + L L I+H N H A Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + + + LF + + ++++ Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSMSHSKIKTQ 191 >gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM 16511] gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM 16511] Length = 272 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 31/181 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFI 60 + I D ET G + + V + ++ + I+ E F C +++ + Sbjct: 70 MQEYCIIDIETNGSKPGRSQVIEIGAVML-KEGKIIDRLETFVACAYLPEHII-----KL 123 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI P E ++ F + +N FD + F R Sbjct: 124 TGIEPTDLAEAP-SRKEALTQLRNFM---GDAVFTAHNAGFDHGFLNASFQRFGLGPI-- 177 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 GN +D+ R + + + L L + + H A D Sbjct: 178 ----GNPVLCTIDLARRTF--------------ESERYGLAYLNESLDLGMQAHHRAYND 219 Query: 181 V 181 Sbjct: 220 A 220 >gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica] Length = 217 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + + F +P + +P A+ TG Sbjct: 20 VVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 N + D I L + G+ N A Sbjct: 140 ------RNPFHPFATFDTAALGGLVLGQTI-------------LAKACITAGVSFDNNQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTNRTAELFCEMVNR 200 >gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 237 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57 +I D ET G + R + V E I+ F + A Sbjct: 7 IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + GIT + L + + + + I+ +N FD + Sbjct: 61 LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDIGFINQELEILNKKI 116 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175 ++ S D L + R ++ + L L H N H Sbjct: 117 KINTF---CSIIDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 A D Y L L+ + LF K +KL + Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204 >gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium HTCC2083] gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium HTCC2083] Length = 224 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 29/183 (15%) Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D DR + V ++ + + + +A + G+ Sbjct: 2 DTETTGFDPQQGDRIVEIGAV---ELINQMPTGRTYHQYINPERAMPDDAFQVHGLGDDF 58 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 V + ++ F + +N FD + Sbjct: 59 LRDKPV-FKQIAQEFLDFVKD---DTMVIHNASFDMKFLNAELGWLNMKQLPMEQA---- 110 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATL 185 D L + R + SP L L I++ N H A D Sbjct: 111 -LDTLAIARKRFPGSPA--------------SLDALCRRFNIDNSNRTLHGALLDSEILA 155 Query: 186 ALV 188 + Sbjct: 156 EVY 158 >gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5] gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5] gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] Length = 229 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 26/217 (11%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA I GI+ Sbjct: 7 IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F S I +N FD + + + Sbjct: 64 GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTDIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R+I+ + + L L +++ H A D Sbjct: 118 LANTIDTLVMARSIFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + F+ + N L Sbjct: 164 LLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNK 200 >gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 230 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 17/190 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D E G + D +++ + KI P+ E++ I IT Sbjct: 24 FVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPST-KKFRKESIMIHEIT 82 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + + +E + +F C++ + + D + + N + + Sbjct: 83 PSELEKCPQIE----PILREFIKFSKNCLVVGHCVDIDLTFLKKEIRNNLREIFE----- 133 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + + + + D + L+D+AL+ IE HDA +D + T Sbjct: 134 -PFSIDTLLIYKWL------IKKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFIT 186 Query: 185 LALVWLIREK 194 + + Sbjct: 187 AQIFQRLLAY 196 >gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] Length = 241 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 54/206 (26%), Gaps = 34/206 (16%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + ++ + + EA + GI Sbjct: 4 IVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEY---INPERSMPAEAFSVHGIG 60 Query: 65 PQKALRDGVVEAE---------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 P E F++ +F + +N FD + Sbjct: 61 PDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFVQDSRLVIHNASFDMKFLNAELDWMGL 120 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 D L + R + SP L L I++ N Sbjct: 121 PKLPMDQA-----LDTLAMARKRFPGSPAT--------------LDALCRRFNIDNTNRT 161 Query: 175 -HDAKADVYATLALVWLIREKKPKLF 199 H A D + + + F Sbjct: 162 LHGALLDSEILADVYLELIGGRQPDF 187 >gi|160943710|ref|ZP_02090941.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii M21/2] gi|158444884|gb|EDP21887.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii M21/2] Length = 330 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 60/247 (24%), Gaps = 34/247 (13%) Query: 1 MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 M + V++D E G + V++D +++ + +P Sbjct: 1 MPRNLVLFDLEWNIGYQPYTFNYHGVQQTLRGEIVEIGAVKIDEDANVLDTFSIHL-RPR 59 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 +TG+T G + + +F D + Sbjct: 60 IFRKLQHHIAKVTGLTQADL-DRGEP---IVQGLRRFMQWCGPDAEFAEWGLDDVPVLKQ 115 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + D R + ++ L+ + G Sbjct: 116 NLFLCNLDESRPT----------------VWYDLQQVFLREHPRKEGEGMTLESVVTRMG 159 Query: 169 IEHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 + HDA +D T + L+ + D + L + + H Sbjct: 160 VPMERPFHDALSDTLYTADVCRLLDLRAGLAAYPTEDEALRQSLCQTPGDYRDFTVFHGY 219 Query: 228 GMFGASR 234 A R Sbjct: 220 VEQYAWR 226 >gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] Length = 217 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 63/212 (29%), Gaps = 30/212 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++ E + F +P + +P A+ TG Sbjct: 20 VVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 IDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 N + D I L + GI N A Sbjct: 140 ------RNPFHPFATFDTAALGGLVLGQTI-------------LAKACITAGIPFDNNQA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYR 206 H A D T L + + +L + Sbjct: 181 HSALYDTDRTAELFCEMVNRWKQLGGWPLTTT 212 >gi|124025389|ref|YP_001014505.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL1A] gi|123960457|gb|ABM75240.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL1A] Length = 292 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 29/192 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +I D ET G D D + + + + + + + F + + A I Sbjct: 65 PENILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSF---LLPVEINN--AEKIN 119 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P + R +E + V N +I +N FD Sbjct: 120 NI-PAEITRLPQPLSEAIKYFESLVRVSN--VIVAHNAEFDK------------------ 158 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + S D I WP+ T ++DLALA G+ NAH A D Sbjct: 159 ---KWFGLKKLPQIEKPWICSMDDITWPADRQLKTRPSVRDLALAYGVPVWNAHRALTDC 215 Query: 182 YATLALVWLIRE 193 + E Sbjct: 216 IYLAEVFIRCTE 227 >gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] Length = 251 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 36/207 (17%) Query: 2 TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53 T +VI D ET G + + + V E I + F + Sbjct: 5 TTRYVILDTETTGMNKFGIHYEGHKIIEIGAV------EIINRSLTKNKFHVYLNPNRPV 58 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 D EA I GI+ + V ++ S + F + ++ +N + + + N Sbjct: 59 DSEAFKIHGISDRFLKDKPV-FSDISNKFLSFI--CGSNLVIHNASFDVGFLNFELRETN 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++ S D L + R ++ + L L I+ Sbjct: 116 LKYKTLETY---CSIIDSLKLARNLFPGQRN--------------SLDALCERYFIDISQ 158 Query: 174 A--HDAKADVYATLALVWLIREKKPKL 198 H+A D + + + ++ Sbjct: 159 RNLHNALIDAQILAYVFLAMTGGQTEM 185 >gi|302561692|ref|ZP_07314034.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479310|gb|EFL42403.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 241 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 20/191 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V A + G+T + Sbjct: 12 FDTETTGVDVENDRIVSAALVVQDASG---ARPRVTRWLVNPGVPVPAAATEVHGLTEEH 68 Query: 68 ALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 R+G E + + + +V ++ N FD R+ Sbjct: 69 LQRNGRWPAPVMYEMAEALAEQAAVGRPLVVM--NAPFDLTLLDRELRRH--------RA 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + RW +R + + D L DL G+ AH+A AD A Sbjct: 119 SSLGRWLERSPLRVLDPWVLDKH---LDRYRKGRRTLTDLCAHYGVPLEGAHEAAADAVA 175 Query: 184 TLALVWLIREK 194 L + + + Sbjct: 176 ALEVTRAVGRR 186 >gi|113955550|ref|YP_730762.1| DNA polymerase III subunit epsilon [Synechococcus sp. CC9311] gi|113882901|gb|ABI47859.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. CC9311] Length = 263 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 53/190 (27%), Gaps = 29/190 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G D + + D +I + C + A I I Sbjct: 39 TLLIIDTETSGLDPEAHHCLEIGAILFDVSSRQILAQMS--CLLP---VESNAAEAINRI 93 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P R + + ++ +N FD + Sbjct: 94 -PAAVTRLPQPWEPGLHYFQELLKAAD--LLVAHNAAFDQQWFGRG-------------- 136 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + S + ++WP + ++DLALA I AH A +D Sbjct: 137 -------HLPATDLPWLCSMEDMRWPKEKQLRSRPSVRDLALAYEIPVWAAHRALSDCIY 189 Query: 184 TLALVWLIRE 193 + + Sbjct: 190 LAEVFRRCDQ 199 >gi|88797051|ref|ZP_01112641.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297] gi|88779920|gb|EAR11105.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297] Length = 236 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 51/192 (26%), Gaps = 14/192 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET G + D V Q + + + + E+V + IT Sbjct: 48 FVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVRTRN---LTSESVVVHRIT 104 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + + + R Sbjct: 105 HSDIAQAPP----LRAVLSEVIPCLQGRQVVVHYRYMEREFFRQSVAG------LHESTW 154 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + A + I S +L ++ + H+A D AT Sbjct: 155 LFPVIDTLE-LEAAHLRQKQSIVSRLFKQTLPSLRLPNVRERYNLPAYENHNALTDALAT 213 Query: 185 LALVWLIREKKP 196 L+ K+ Sbjct: 214 AELLQAQVAKQN 225 >gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b] Length = 233 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 VI D ET G R + + E I+ F D A + Sbjct: 4 VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + + QF I +N FD + + + + Sbjct: 58 GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 ++ D L + R + + L L I+H N H A Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + + + LF + ++++++ Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSFSQSKIKTQ 191 >gi|261400541|ref|ZP_05986666.1| oligoribonuclease [Neisseria lactamica ATCC 23970] gi|269209608|gb|EEZ76063.1| oligoribonuclease [Neisseria lactamica ATCC 23970] Length = 187 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +DD L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 180 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 28/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET + A V V + + ++S D + + I GIT Sbjct: 3 FIAMDFET--ANRKRASACSLALVVVQQN-KVVDSFYTL---INPQMQFDAQNIHIHGIT 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + I F I+ +N FD R R Sbjct: 57 PEMVQDQP-TFDQVWPHIQMF--YTPGRIVTAHNAPFDVSVMRLTLDRYGI--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ ++D ++ F P + +L ++ A I + H+A AD YA Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNALADSYAC 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 ++ E + +K Sbjct: 155 ARILIAENEHFGEARIKSMMKLSKA 179 >gi|293411964|ref|ZP_06654689.1| conserved hypothetical protein [Escherichia coli B354] gi|291469519|gb|EFF12008.1| conserved hypothetical protein [Escherichia coli B354] Length = 185 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 23/196 (11%) Query: 2 TNHFVI-YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 V D E+ G D +A + + A R + E + + DP+A Sbjct: 1 MTTIVAGIDIESTGLDFLAGHKIIEIAITRY--ELETQRHIDSLEMRFNPRRNIDPKAQA 58 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ ++ + ++ + I + + I +N FD + R+ F Sbjct: 59 VHGISLEQLAAEPLLSNH-ASEIGAYMGACSA-WIAHNGEAFDIPFIRHEFSGYGVRL-- 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++D M + W + D + +L +H AH A Sbjct: 115 -------PEVPVIDTMLSG--------LWATEDGKRPRLEELAFSLGFIYDHAKAHSALY 159 Query: 180 DVYATLALVWLIREKK 195 D + + R K Sbjct: 160 DTNLMMQCFFKARNKY 175 >gi|269103713|ref|ZP_06156410.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268163611|gb|EEZ42107.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 237 Score = 71.4 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 18/204 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D+ET G D D V + +Q + + K PE I IT Sbjct: 52 YLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIK-DSQQKVKPETAIINHIT 110 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K GV + ++ + + + + + R W Sbjct: 111 TEKLA-HGVELDCAMAALFNAMK--GKIMVAHGAMIEQRFLNHYLATRYQLPPLPIIW-- 165 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + +++ A ++L + +G+ AH A D AT Sbjct: 166 ----LDTLTIEKSLSIHRQQL--------KANDYRLAQIRQRHGLPAYPAHGAVIDAIAT 213 Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208 L+ +++ K Sbjct: 214 AELLLVLQVACFGKKTGTLANWLK 237 >gi|257454169|ref|ZP_05619440.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60] gi|257448430|gb|EEV23402.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60] Length = 217 Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 26/194 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET G D+ + A D I T ++ D P A + GI P Sbjct: 50 LFFDTETIGGG-REDQIIEIAF--CDSDRHVIIDTLIYT-----DRTSSPGAFKVHGIYP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + I Q + YN Sbjct: 102 HELIGKP-TFIDIQPAIVQLLK--GRTLYAYNANFDIRMMR---------------QSGH 143 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R + + F+ Q+ F L L GIEH NAH A+ D A + Sbjct: 144 KLRLQQVGIKCLCKQFADFIGQYSPYFKANRYFSLSKACLHFGIEHSNAHRARPDALACV 203 Query: 186 ALVWLIREKKPKLF 199 + + + + Sbjct: 204 TVWQGMVKSHHWDY 217 >gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. paratuberculosis K-10] gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. avium ATCC 25291] gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10] Length = 329 Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 76/295 (25%), Gaps = 38/295 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D + +S P P + G+T Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSL---LNPGVDPGP--THVHGLTAA 73 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + + +N+ FD + + + Sbjct: 74 MLEDQPQ-FADIAGDVVEVLR---GRTLVAHNVAFDYAFLAAEAELAGIELPVDT----- 124 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 ++ + +L+ LA G+ HDA D Sbjct: 125 ----VMCTVELARRLDLGIDN----------LRLETLAAHWGVTQQRPHDAFDDAMVLTG 170 Query: 187 LVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ ++ ++ ++ + + + PL ++ V Sbjct: 171 VLASALQRARERDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMP--CPYLNPGPYVG 228 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 P + + + +L +R+ + V V N Sbjct: 229 GRPLVQGMRVAL------AAEVERTHEELVERILHAGLAYSDTVDRETSLVVCND 277 >gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] Length = 243 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 4/111 (3%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V V+ + + +A I GI+ ++ Sbjct: 11 FDLETTGTDPLEARIVTAAVVAVESSGGEAAGCRTWLA--DPGVRIPEQASAIHGISSER 68 Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A +G E + I + N FD R+ Sbjct: 69 AAAEGRPVREVADEIAGILVEHWRAGVPVVAYNAAFDLTLLSAELRRHGLP 119 >gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703] gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703] Length = 225 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 28/219 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + + T F +P + + +P+A+ G Sbjct: 22 VVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNPDALAFNG 81 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N I+ +N FD + R Sbjct: 82 IDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAAAERCGLK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 142 RNPFHPFVTFDTTSLSGLVLGQTVLAKAC-----------------ITADILFDSSQAHS 184 Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213 A D T L + + + + + + + Sbjct: 185 ALYDTQRTAELFCELVNRWKRLGGWPLAVEDSDNDSAVN 223 >gi|27367317|ref|NP_762844.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|27358886|gb|AAO07834.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6] Length = 245 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 19/205 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G D D+ V D E I + E+ I G+ Sbjct: 52 SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 109 Query: 64 TPQKALRDGVVEAE---FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TPQ AL G + + + + F ++ ++ + + + ++F + Sbjct: 110 TPQ-ALEQGCSLEQGCSLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQHFQLA--- 165 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + + +SF+L DL + ++H A +D Sbjct: 166 --KLPCHFVDTLQI--------EKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASD 215 Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205 A L + +K + + Sbjct: 216 ALACAELFIVQSKKLDLNKQRQLNT 240 >gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish 7] gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7] Length = 230 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 26/217 (11%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA I GI+ Sbjct: 7 IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F S I +N FD + + + Sbjct: 64 GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTDIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R+I+ + + L L +++ H A D Sbjct: 118 LANTIDTLVMARSIFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + F+ + N L Sbjct: 164 LLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNK 200 >gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500] Length = 725 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 46/189 (24%), Gaps = 30/189 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G D + V + + F P A I ++ Sbjct: 322 VCFDLETSGFGPD-DSIIEIGAVEL-INGCRTG--LTFQSYAKPKTQIHPAAEQIHQLSN 377 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +E + F I+ +N+ FD R+ Sbjct: 378 FLLQDAPPIEF----VLSSFMDFVGDSILVAHNLAFDRRMLIQELVRSKTPFDIN----- 428 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA---NGIEHVNAHDAKADVY 182 MR D +++ L ++ N + H A D Sbjct: 429 ---HKCFCTMRYFRKMYKD-----------SNYSLDSISQQLKINKLLLRRTHGALVDSE 474 Query: 183 ATLALVWLI 191 + + Sbjct: 475 ILAIVYKHL 483 >gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] Length = 242 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 53/221 (23%), Gaps = 42/221 (19%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + + DR + + + + A I GI Sbjct: 4 IVLDTETTGFEPSEGDRIVEIGAIEL-HNHMPTGR--TYHQYINPKRTMPAGAFGIHGIG 60 Query: 65 PQ-------------KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 P V AE ++ F + +N FD + Sbjct: 61 PDLLEPPQTPTAGQVLLRDKPV-FAEIAQAFVDFIGDSK---LVIHNAAFDMKFLNAELG 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 D L + R + SP L L GI++ Sbjct: 117 WVNRPLLPMGQS-----LDTLGIARKKFPGSPA--------------SLDALCRRFGIDN 157 Query: 172 VNA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 N H A D + + + + + Sbjct: 158 SNRTLHGALLDSEILAEVYLELIGGRQPDLVMGDQTGSNAK 198 >gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 238 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 52/199 (26%), Gaps = 28/199 (14%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I D ET G DR + V + + P+A+ Sbjct: 1 MSRQ-IILDTETTGLSADNGDRLIELGCV---EMVNRKLTGNNLHLYFNAGRDSHPDALR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT + E + I ++ I +N FD + R Sbjct: 57 VHGITTEFLKDKPRFEHKV-DEIWEYLQGAELII---HNAPFDLGFLNKELELANRPPIR 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177 D L + + ++ L L +++ H A Sbjct: 113 QCVSG---VIDTLVMAKEMFPG--------------KRNSLDSLCDRLEVDNSGRTLHGA 155 Query: 178 KADVYATLALVWLIREKKP 196 D + + + Sbjct: 156 LLDAELLADVYINLTRGQE 174 >gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 225 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 28/194 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G D+ + A + ++ +I + F + A GI+ Sbjct: 4 IILDTETTGLSFNTDKIIEIACIELE---NQIPTKNKFHVFINPNMDISDGAYQTHGISR 60 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 V + ++ F + +N FD + + + Sbjct: 61 DFLRDKPV-FKDIAKEFLNFIKDSK---LVIHNADFDLAFLNKELQELDLEPL-----SK 111 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183 + D L + R + S L L I H A D Sbjct: 112 DRVVDTLFLARQKFPGSQA--------------SLDALCKRFKINTSEREKHSALVDCNL 157 Query: 184 TLALVWLIREKKPK 197 + + EKK Sbjct: 158 LTEVYIELLEKKEP 171 >gi|325068103|ref|ZP_08126776.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20] Length = 260 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 19/196 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G D + DR A V + +S + A + G+T Sbjct: 28 FDTETTGVDPSGDRLVTAALVWRATPRADGVRPQSVATWLA--DPGVEIPEAAAAVHGVT 85 Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++A +G E + + ++ + N +D R+ Sbjct: 86 TERARAEGRPVTEVLAEVSEHLVEAMAAGTPVVAFNASYDLTLMEAELARHGLP--TMRS 143 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADV 181 G + D + A +L DL G+ A H A+ DV Sbjct: 144 RLGRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVHVDEALHTAEVDV 194 Query: 182 YATLALVWLIREKKPK 197 ATL ++ + PK Sbjct: 195 AATLDVLEALAAAHPK 210 >gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis] gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis] Length = 501 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 35/195 (17%) Query: 5 FVIYDYETF-------GRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPE 56 +D ET G +F + V R+ E++ S +PA+ L P Sbjct: 12 IAFFDLETTVPNRPGQGF-----AILEFGAILVCSRKLEELHSYSTL-VRPANLSLISPT 65 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +V GIT + AE + +++ + G+N RFD + R + Sbjct: 66 SVRCNGITHDAVVLAP-TFAEIADIVYEILN--GRIWAGHNIQRFD-----CVRIREAFA 117 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 D L ++ A K+ LA G+ H Sbjct: 118 EIGRQPPENKGIIDTLALL------------THKFGRRAGDMKMASLATYFGLG-KQTHR 164 Query: 177 AKADVYATLALVWLI 191 + DV L ++ Sbjct: 165 SLDDVRMNLEVLKYC 179 >gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12] gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12] Length = 323 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + L V E + + F + +N FD + F + Sbjct: 163 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + R + + L L G +H A AD A Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L + P + D + ++ + + Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296 >gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia ambifaria phage BcepF1] gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia ambifaria phage BcepF1] Length = 197 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 57/191 (29%), Gaps = 19/191 (9%) Query: 5 FVIYDYETFGRDV-------ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 F ++D ET G R +FAG+ D I T F C + Sbjct: 3 FTVFDTETTGLPSHPLAPLDRQPRIIEFAGIVTD--GRDILHTLEFRC--NPGVALEEII 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITG+T + F + FF + +F F RN D Sbjct: 59 TKITGLTDADLRDQPDISH-FFGELKSFFGKEPMPHVFGEKPKFARVAHNLSFDRNLLDY 117 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + R LD + A ++ + G KLQ+L E H A Sbjct: 118 ------DLKRRGKTLDDIGFNDALMICTVEQTTPQFGRP-MKLQELWSRARGEFTQKHRA 170 Query: 178 KADVYATLALV 188 DV + Sbjct: 171 LDDVMRLHDVC 181 >gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] Length = 233 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 VI D ET G R + + E I+ F D A + Sbjct: 4 VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + + QF I +N FD + + + + Sbjct: 58 GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 ++ D L + R + + L L I+H N H A Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + + + LF + ++++++ Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQ 191 >gi|294669159|ref|ZP_06734240.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308903|gb|EFE50146.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 185 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61 + D E G D +R + A + D + +EV+ +D+ L +A Sbjct: 7 NLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDAWNTATH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYD 116 G T Q+ + EAE +++ F + + N+I D + R Sbjct: 67 GRTGLTQRVRESQLTEAEVEQKLLDFIAQWIPEKSTPMCGNSIHQDRRFMVKYMPRLEAY 126 Query: 117 SYRW 120 + Sbjct: 127 FHYR 130 >gi|213618879|ref|ZP_03372705.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 178 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 19/166 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N ++ D ET G + + D + EA+ I G Sbjct: 18 NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + F + YN FD R + N S W Sbjct: 70 ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + + P R +G KL D A G Sbjct: 126 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEG 164 >gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] Length = 233 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 VI D ET G R + + E I+ F D A + Sbjct: 4 VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + + QF I +N FD + + + + Sbjct: 58 GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 ++ D L + R + + L L I+H N H A Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + + + LF + ++++++ Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSFSQSKIKTQ 191 >gi|241667560|ref|ZP_04755138.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876105|ref|ZP_05248815.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842126|gb|EET20540.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 178 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 9/163 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVF 59 T++ V D E G DV R + A + D+ I E +D+ L + Sbjct: 4 TDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEILNSMNEWCIK 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 + G T Q+ + ++I +F + N+I D + Y Sbjct: 64 VHGETGLTQRVKDSKTSLKQAEQKILEFIKEYVPYQSSPLCGNSIWQDRRFL--AKYMPN 121 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 122 IDDYCHYRMLDVTSLKLLNEYWGDGESFYKKSTHKALDDIRES 164 >gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 241 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 44/164 (26%), Gaps = 18/164 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V A + G+T + Sbjct: 12 FDTETTGVDVETDRIVSAAVVVQDAAGT---RPRVSRWLVNPGVPVPAGATAVHGLTEEH 68 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+G A I + + ++ N FD R+ S W + Sbjct: 69 LQRNGRWPAPVMFEIAETLAEQAAAGRPLVVMNAP-FDLTVLDRELRRHRASSLDR-WLD 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + L + + L DL G Sbjct: 127 SSPLLVLDPRVLDKHL----------DRYRKGRRTLTDLCEHYG 160 >gi|323343969|ref|ZP_08084196.1| exonuclease [Prevotella oralis ATCC 33269] gi|323095788|gb|EFZ38362.1| exonuclease [Prevotella oralis ATCC 33269] Length = 165 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 26/190 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N+F D+ET + A V V E +S C + Y + Sbjct: 1 MNNFAAIDFET--ANAARTSVCSVGMVIV-EDGEITDSYYHLICPLPNYYTL--WTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + + I + +N FD+ + + +Y Sbjct: 56 GLTFEDTAGAP-TFPDVWAEIAPKIRY---LPLVAHNKAFDE-----SCLKAVFKAYGMQ 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + LL R +++LQ +A G + H A AD Sbjct: 107 YPDYKFYCTLLGARRTFR------------KGMLPNYQLQTVAQYCGYSLSHHHHALADA 154 Query: 182 YATLALVWLI 191 A + I Sbjct: 155 EACAHIALKI 164 >gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121] gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121] Length = 226 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 7/116 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET GRD + R +D S E A + GI+ Sbjct: 9 ICAFDLETTGRDPSTARIVSACVAVIDGS-----SVETRTWLLDPGVDIPAGASAVHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + A + G +E I + S + N +D R ++ Sbjct: 64 TEFAAQHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAF 119 >gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13] gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13] Length = 226 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 26/213 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + + + T F +P + PEA+ G Sbjct: 31 VVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + +A + AH Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAADIPFDSTQAHS 193 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 A D T L + + +L + N + Sbjct: 194 ALYDTEQTAQLFCELVNRWKRLGGWPLAIGNND 226 >gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] Length = 407 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 28/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D E+ G + A R D Q + + + P +T IT Sbjct: 2 YSIIDIESNGAGYRNECIIDIAIYRYDGQ-KITDQFISL---VNPEGDITPFVQKLTSIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ E ++R+ + NT ++G+N FD R F R YD + Sbjct: 58 PKMVKTAPKFH-EIAKRVIEITQ--NTTLVGHNI-DFDYRMLRQSFKRLGYDFKINT--- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + + S+ L L + GI N H A+ D AT Sbjct: 111 ----LDTIPLAK-------------KLIPDEVSYSLGKLVKSLGIPLTNHHRAEGDARAT 153 Query: 185 LALVWLIREKKPKL 198 L L L+ K + Sbjct: 154 LELFKLLISKDTEN 167 >gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 243 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V +++ + + D + A +TG+T Sbjct: 4 IILDTETTGLEWKKGNRIVEIGCV---ELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + +F++ +F + + + +N FD + N + + Sbjct: 61 LEFLDDKP----DFAQIADEFLAFIDGAELIIHNAAFDLGFLDNEL--SLLGPQYGKITD 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R + + L L G++ H H D Sbjct: 115 RCTVIDTLVMARERFPGQRN--------------SLDALCRRLGVDNSHRALHGGLLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILGDVYIALTSGQEEI 176 >gi|51597447|ref|YP_071638.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953] gi|186896564|ref|YP_001873676.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] gi|51590729|emb|CAH22374.1| putative conserved bacteriophage protein [Yersinia pseudotuberculosis IP 32953] gi|186699590|gb|ACC90219.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 233 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 20/189 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++I D ET G D + + + D + KP D EA I GI Sbjct: 59 NYLILDTETTGLD-NAAEIVEISII--DCMGNVL---LDTLIKPLGFIPSDVEA--IHGI 110 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + N + YN+ ++ + Sbjct: 111 TNKMVDNAPH-WCDIHEKFIEIIKSRN--FVAYNSRFDTRLIYQSAEFS--------GVT 159 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVY 182 G A+ ++ QW SR L A + A H A +D Sbjct: 160 TGADDIASASGNCAMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNVITEGASHRALSDCK 219 Query: 183 ATLALVWLI 191 TL ++ + Sbjct: 220 TTLGVIKAM 228 >gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] Length = 329 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 76/295 (25%), Gaps = 38/295 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D + +S P P + G+T Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSL---LNPGVDPGP--THVHGLTAA 73 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + + +N+ FD + + + Sbjct: 74 MLEDQPQ-FADIAGDVVEVLR---GRTLVAHNVAFDYAFLAAEAELAGIELPVDT----- 124 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 ++ + +L+ LA G+ HDA D Sbjct: 125 ----VMCTVELARRLDLGIDN----------LRLETLAAYWGVTQQRPHDAFDDAMVLTG 170 Query: 187 LVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ ++ ++ ++ + + + PL ++ V Sbjct: 171 VLASALQRARERDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMP--CPYLNPGPYVG 228 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 P + + + +L +R+ + V V N Sbjct: 229 GRPLVQGMRVAL------AAEVERTHEELVERILHAGLAYSDTVDRETSLVVCND 277 >gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens MLS10] gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens MLS10] Length = 242 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 27/206 (13%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F ++D ET G L D +I+ E F+ +TG Sbjct: 59 TFTVFDLETTGFFCNLGDEVLAIGA--TKLNRNRIDFPEQFYEVIEPVKPMSAFVSNLTG 116 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T ++ G+ E +F I+ + FD + W Sbjct: 117 MTHEEVT-AGLAFPEA---FSKFLEFSKGSILVAHPASFDVQF---------LKILADRW 163 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D Q L +L IE H A AD Y Sbjct: 164 R-----------LHGYDPLYIDQYQLAKSLYPRKRNSLDELIKLYQIETSGRHHALADAY 212 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 T + + ++ + K Sbjct: 213 MTATVFHHLLDELDAKDVKTWGELKK 238 >gi|83311172|ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum AMB-1] gi|82946013|dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 306 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 2/68 (2%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G D A D + A V E + F E +TGI Sbjct: 53 IFIDLETTGLDPAKDEIIELAMVPFVYGLDGRIFEIQDAFQGLRQPSNPIPAEITKLTGI 112 Query: 64 TPQKALRD 71 T + Sbjct: 113 TDEMVAGK 120 >gi|254671000|emb|CBA07757.1| oligoribonuclease [Neisseria meningitidis alpha153] Length = 215 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 32 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 92 THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151 Query: 115 YDSYRW 120 + Sbjct: 152 NYFHYR 157 >gi|148979109|ref|ZP_01815317.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145961975|gb|EDK27264.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 238 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET G + + D V +I + + E+V I GIT Sbjct: 48 FLALDFETTGLNPSKDGIITIGLVPF--TLNRIYLRQARHWTLRPRQKLEEESVVIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + Q + + + D+ + + R N Sbjct: 106 HNDIIDAP-DLDEVLDEVLQAMA--GHIPVVHYRRIERDFLNNALKVRL----------N 152 Query: 125 GNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181 + +LD + W S +L + H A D Sbjct: 153 EGIEFPVLDTLEIESQIQNKLAGGLWNKLKGKKPGSVRLGQSRRRYHLPDYTPHHALTDA 212 Query: 182 YATLALVWLIREKK 195 AT L+ Sbjct: 213 IATAELLQAQVAHH 226 >gi|326802467|ref|YP_004320286.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] gi|326553231|gb|ADZ81616.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] Length = 238 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 27/218 (12%) Query: 1 MTNHFVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50 M + + D ET G Q A + + +I+ E F+ DD Sbjct: 1 MQEYLLFIDTETTGLPKKWTVGYSTKDNWPSAVQVAWIVFTKDGREIKR-ENFYVN-EDD 58 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + +A + I GV ++ ++G + + D + F Sbjct: 59 VVVSRQAQLVHRIKDSYLRTFGVPRCAVMEKLSSDLRQFKPLVVG-HFVALDFHVLGADF 117 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 YR G+ R + + Y P + E Sbjct: 118 YRC-----AMENPLGDLRLFCTMLASSGYVKKPWIKYLRLNEL---------YQELFEKE 163 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 AH+A D AT + + ++K E + + + K Sbjct: 164 LEKAHNALLDADATAKSYFELVKRKEVTEETIEEQQVK 201 >gi|269968066|ref|ZP_06182103.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827312|gb|EEZ81609.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 238 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 19/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F++ D ET G D + V + + + +++ + D PE + + IT Sbjct: 51 FIVLDLETTGLDSEEEVILSMGWVEIRQGHIDLATSQHLYV--HSDSKIKPETIVVNHIT 108 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q G+ E R FF +I + + + R F Sbjct: 109 QQMLTD-GISIHEAMRT---FFKAAENKVIVAHGCIVETSFINQYLQRVFN--------- 155 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L ++ +Q + L G+ N H+A AD AT Sbjct: 156 ----IKELPLIWIDTLRIEKRLQRAINASDESDVTLAATRERYGLPAYNGHNALADAIAT 211 Query: 185 LALVWLIREKKPKL 198 L+ + + + Sbjct: 212 AELLLVQQTRIAPQ 225 >gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] Length = 242 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 56/217 (25%), Gaps = 34/217 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + + EA + GI Sbjct: 4 IVLDTETTGFDPFSGDRIVEIGAV---ELFNHMPTGKTYHEYINPERSMPHEAFGVHGIG 60 Query: 65 PQKALRDGVVE---------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 P E F++ F + +N FD + Sbjct: 61 PDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFVQDSKLVIHNASFDMKFLNAELDWMGL 120 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + D L V R + +P L L I++ N Sbjct: 121 PKLPLNQA-----IDTLAVARKRFPGAPAT--------------LDALCRRFQIDNSNRT 161 Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 H A D + + + F + Sbjct: 162 LHGALLDSEILAEVYLELIGGRQPDFGLSTSTSGSKE 198 >gi|227499152|ref|ZP_03929287.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904599|gb|EEH90517.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 228 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 61/196 (31%), Gaps = 24/196 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D E G A D + A ++VD + VF +TGIT Sbjct: 56 VVFDLELAG--YAEDDIIEIAAIKVDFLGRQTA---VFRELIRPRTKISKRVTEMTGITR 110 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E +R F + ++G++ D R ++R + + Sbjct: 111 DMVKDKPQ-LPEVLKRFFAFVE--GSAVMGHDIGYNDIMAINLACRRYGMKAFRPPFLDT 167 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 SR L + R L L I H+A AD ATL Sbjct: 168 -SRLILRHLSREA---------------VGGKTGLAALLAHFNIPIHRHHEALADCEATL 211 Query: 186 ALVWLIREKKPKLFEY 201 L + ++ K + Sbjct: 212 LLYEAVAKEIRKQKSH 227 >gi|23013261|ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 302 Score = 71.0 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 56/184 (30%), Gaps = 32/184 (17%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D+ D + V + +V PE +TGIT Sbjct: 44 VVDVETTGLDLVKDEIIELGMVLFEFSSDGRIYRILDVVEAFQEPTIPILPEITQLTGIT 103 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + AE R I ++ +N FD + Sbjct: 104 AEMVAGHSIDVAEIERLI------APVALVIAHNAGFDRRF------------------- 138 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + L A A++ + +G KL L G+ H H A AD A Sbjct: 139 ----LERLAPGFAKKAWACSINEIDWAAEGIGGTKLFYLLAQYGLFHDG-HRAGADCLAL 193 Query: 185 LALV 188 L ++ Sbjct: 194 LEIL 197 >gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] Length = 182 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 55/193 (28%), Gaps = 26/193 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G V DR + A ++++ + +F P A + GI+ Sbjct: 9 IILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYF-NPQP-VKVSRSAFNVHGISN 66 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +R +F + + +N RFD D Sbjct: 67 EFLSDKPA-FKSCAREFLEFVAGHE---LIAHNARFDLQIINRELQMAGADPI------- 115 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYAT 184 D + + S + L +E H A D Sbjct: 116 ------------DAGCWRDSLSIAKQLFPNRSNSMAALCKRFNLECETETHSAARDCELL 163 Query: 185 LALVWLIREKKPK 197 + LI ++K + Sbjct: 164 ARVYELILDEKRR 176 >gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. Iowa] gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa] Length = 229 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 26/217 (11%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA I GI+ Sbjct: 7 IILDTETTGLDPQQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F S I +N FD + + + Sbjct: 64 GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTDIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R+I+ + + L L +++ H A D Sbjct: 118 LANTIDTLVMARSIFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + F+ + N L Sbjct: 164 LLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNK 200 >gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] Length = 253 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 10 MIQRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 66 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 67 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 124 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 166 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 167 ALIDCELLGEVYLAMTRRQ 185 >gi|54026013|ref|YP_120255.1| DNA polymerase III subunit epsilon [Nocardia farcinica IFM 10152] gi|54017521|dbj|BAD58891.1| putative DNA polymerase [Nocardia farcinica IFM 10152] Length = 229 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 8/97 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET D R + +RVD EA I G T + Sbjct: 11 FDLETTSADPHSARVVTASIIRVDG-----GDVRARNWIANPHIPIPAEATEIHGYTDEY 65 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRF 101 + G A+ + C+ YN Sbjct: 66 VQKHGRPHADVIAEVTAELHACWAEGRCVAVYNGSFD 102 >gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 266 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 35/226 (15%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ F I D ET G + + + A ++V + +E E + + +P Sbjct: 66 MSESTFCIVDIETNGSKIEKHQIIEIAALKV-KNGLVVERFESLV----ECHEINPHITE 120 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ITGI+ + + + ++ F + + ++++FD + + Sbjct: 121 ITGISTNETIDAPN----LKKVMYDFRTFLGDAVFIAHDVKFDYKFISLSMQKIGLPPL- 175 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL---QDLALANGIEHVNAHD 176 + + S++ + N H Sbjct: 176 ---------------------LNRSLCSLSLAERTIESYRYALSYLNTIFNLHPEATHHR 214 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 A +DV T L L K + + D ++ K + P Sbjct: 215 AMSDVITTYELFKLSLNSVDKEVKTVEDLIRFSKEAKRLKRPKFDP 260 >gi|308177075|ref|YP_003916481.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307744538|emb|CBT75510.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 333 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 63/212 (29%), Gaps = 29/212 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F D+ET + + V+V R + +E+ + PA DP + I Sbjct: 1 MALDFTAIDFET--ANGFIGSACSVGLVKV-RSGQIVETEQWLMQPPAGFDHFDPRNISI 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT S+++ + ++ +N FD R + Sbjct: 58 HHITSDMVSDAPR----VSQKLPDLLEFIGSDVLVAHNSSFDSGVIRAASEASELP---- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ + S+ L +A G N H+A AD Sbjct: 110 ----------------VPQIAHLCTVKLSRKAYDLPSYSLPFVAEEAGHPIENHHEALAD 153 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 A +I + + + + + +R Sbjct: 154 SLACA--WAMIDIAQRSGRQSVLETADHYGVR 183 >gi|295133689|ref|YP_003584365.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294981704|gb|ADF52169.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 218 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV+ D ET G D DR V++ +S E++ + +P+ V I G Sbjct: 36 TFVVLDTETTGFDQEKDRILSIGCVKIKNNKLLVADSFEIYLKQ----EKFNPDTVEIHG 91 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + + E + + ++ ++ ++ FD RN Sbjct: 92 LIKHERFET-ISEEKAIQLFLKYIKDS---VLVAHHAGFDINMINAALKRNHLP------ 141 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + + D ++ L ++ALA I+ + H A D + Sbjct: 142 -------KLKNRVLDTGILYRKTRIISNFIDQHKTYSLDEVALAYNIDLKDRHTAIGDAF 194 Query: 183 ATLALVWLI 191 T I Sbjct: 195 ITAIAFLKI 203 >gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] Length = 229 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 26/217 (11%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA I G++ Sbjct: 7 IILDTETTGLDPQQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGLS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F S I +N FD + + + Sbjct: 64 DEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTEIKLLE 117 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R+++ + + L L +++ H A D Sbjct: 118 LANTIDTLVMARSMFPGA--------------KYNLDALCKRFKVDNSGRQVHSALKDAA 163 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 + + + F+ + N L Sbjct: 164 LLAEVYVALTGGRQSTFKIVDRSIRINNLATHQVNNK 200 >gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 249 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 40/215 (18%) Query: 1 MTNHFV---IYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIEST---EVFFCKPAD 49 M+ + + + D ET G + R + V E I F Sbjct: 1 MSTNIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAV------EIINRHLTDNTFHVYLKP 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 + + D EA+ + GI+ Q + FS I++F + + +N FD + Sbjct: 55 NRMIDIEAIQVHGISDQFLKNKPI----FSEIINEFLTFIRGSELIIHNASFDLGFLNQE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + ++ + D L + R + + L L I Sbjct: 111 LRIC--KANSKKIESYCTVIDSLKLARKKFPGQRN--------------SLDALCERYSI 154 Query: 170 EHVNA---HDAKADVYATLALVWLIREKKPKLFEY 201 + N H A D + + + K+ Sbjct: 155 NNGNRRNLHSALLDARLLANVFLSMSGGQIKMKFM 189 >gi|298369765|ref|ZP_06981082.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314] gi|298282322|gb|EFI23810.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314] Length = 185 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61 + D E G D +R + A + D + +EV+ +D+ L +A Sbjct: 7 NLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDAWNTATH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYD 116 G T Q+ + EAE +++ F + + N+I D + R Sbjct: 67 GRTGLTQRVRESRLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYMPRLEAY 126 Query: 117 SYRW 120 + Sbjct: 127 FHYR 130 >gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 20/190 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D ET G + Q AGVR+ + + F +T + Sbjct: 7 LVAFDLETTGLRYKQEEITQIAGVRL--GGVIMNVEDSFCTYVNPGKPIPENIQKLTRVR 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + + + + G++ RFD + R + + Sbjct: 65 DEDVKDAPKPL-EALQAFSDWV--GDATLFGHDIYRFDFNFIRKYARQEGVE------TR 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D +D+ ++ S L + HDA++D Sbjct: 116 TVRFIDTMDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRR---------HDAQSDAILL 166 Query: 185 LALVWLIREK 194 + I++ Sbjct: 167 AHIYQRIQDH 176 >gi|94501813|ref|ZP_01308325.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65] gi|94426034|gb|EAT11030.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65] Length = 238 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 17/194 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D+ET G + D V ++I + + E++ I I Sbjct: 45 SFMALDFETTGLNPNDDSIISIGMVPF--SLQRIYCNNAVYWVVRPNTPLSEESILIHHI 102 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + +E R + + I+ + R + R F ++ Sbjct: 103 KHSEIQSAPRIE----RLLEPLLEKLSEHILVVHFQRIE---------RLFLNNTLKEHL 149 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADV 181 ++ L+D M R +L + + +H+A D Sbjct: 150 GETLQFPLIDTMEIEKKALKARQGLTGRILNKPVGGIRLNNCRERYSLPQYQSHNALIDA 209 Query: 182 YATLALVWLIREKK 195 AT L Sbjct: 210 QATAELFIAQVAHH 223 >gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586] gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586] Length = 226 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 64/208 (30%), Gaps = 26/208 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + + T F +P + + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAAAERCGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + +A + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAAEIPFDASQAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A D T L + + ++ + Sbjct: 183 ALYDTERTAQLFCELVNRWKRMGGWPLA 210 >gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group] Length = 260 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 27/214 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G R +FA D F + + I Sbjct: 61 TILVFDLETTGYFHKDHRIVEFA--LCDLSG---GKNSTFETLVNPERTVPDYVQHLIKI 115 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117 R G+ ++ + F + +N +FD + F R Sbjct: 116 GTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPL 175 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176 +D L + + + + L+ L GI H +AH Sbjct: 176 PA-----DWLFFDTLLLAK----------KMVKAEGKKRRTSLEALREHYGIVSHDDAHR 220 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A DV + + E L + K Sbjct: 221 AMRDVMILSQVFQKMTFDLKLTNEELINEAMKAS 254 >gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 182 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 29/201 (14%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV+ D ET G + + + AGVRV + + + + + + +TG Sbjct: 3 FVVIDTETTGMNPYRGAKLIEVAGVRVKNWELCRDDFFDSL---IDPECIIPIAITALTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + + F+S + +N FD + + Sbjct: 60 ISNLTVKDK----STVCDVLRGFYSFAGDATLVIHNAPFDLSFINFYGDKCGL------- 108 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G R +D + A G L L GI + H A D Sbjct: 109 --GKLRNQFIDTIEVSKAVFRYGRN-----------NLDILLARLGIIPESRHRALGDAL 155 Query: 183 ATLALVWLIREKKPKLFEYLY 203 AT + + + Sbjct: 156 ATAEAFVAMLNRIGTNNVTRF 176 >gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] Length = 289 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 40/228 (17%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61 V+ D ET G V R + E I+ F C + A + Sbjct: 16 VVLDTETTGLSVRTGHRIIEIGC------LELIDHQPTSRTFQCYINPKFPVSERAFEVH 69 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ++ + + F I +N FD + N F + + Sbjct: 70 HLSNKFLEGFP-TFDGIVQDFRDFIQEDTLII---HNGHFDIKFINNEFQKLNIPEISFE 125 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---HDAK 178 D + + R +Y P L L I+ + H A Sbjct: 126 -----RVIDTMLMARKLYPRQPA--------------SLDSLCDRFNIDKSSRSLGHGAL 166 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR----NKNQLRKLIDIQNMTP 222 DV + + + + L + + +K+ + K + P Sbjct: 167 TDVKLLQLVYAKLLKDQDALGLNVINQSATQTSKSIVNKTDMSKQHRP 214 >gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3] gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3] Length = 180 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 23/189 (12%) Query: 8 YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D ET G DV + + A V + E + D +A + I+ + Sbjct: 7 IDIETTGLDVYSGHKIIEIA--LVSYELETSRKINEVSLRFNPRRNIDAKAQAVHHISLE 64 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + E + +N +FD + + + Sbjct: 65 MLADCPL--FEDKAASLAKALAAADVWVAHNGRQFDIPFITKQMRDCGVELIQR------ 116 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 D +D +W + +A+ + AH A D + Sbjct: 117 PLIDTMD------------ARWACESGKIPRLQELAVAMGFVYDEEKAHGALYDTDLMMQ 164 Query: 187 LVWLIREKK 195 R Sbjct: 165 CFIKARNDY 173 >gi|284799973|ref|ZP_05985349.2| oligoribonuclease [Neisseria subflava NJ9703] gi|284796237|gb|EFC51584.1| oligoribonuclease [Neisseria subflava NJ9703] Length = 230 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ D E G + DR + A + D + ++V+ +D+ L D Sbjct: 51 NNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTAT 110 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115 G T Q+ + EAE + + F S + N+I D + R Sbjct: 111 HGRTGLTQRVRESKLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLEA 170 Query: 116 DSYRW 120 + Sbjct: 171 YFHYR 175 >gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] Length = 937 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 28/202 (13%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G D QF + + K+ F +T I Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKK--RKVVKIYSFL--INPHREIPQAVENLTHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + ++ +I + I +N+ FD + + Sbjct: 66 SNRDVAQARDFNY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + + S+KL+DL I+H+N H A +D Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L+ + +K L + + Sbjct: 163 TAKLLLKVIKKLEALPQATLNT 184 >gi|299472855|emb|CBN80424.1| EsV-1-126 [Ectocarpus siliculosus] Length = 206 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 27/210 (12%) Query: 1 MTNHFVIYDYETFGRDVAL-----------DRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M + +D ET G R A V D++ + V AD Sbjct: 1 MPE--LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWVLRDQKTVYSQRYSVTDPGIAD 58 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + A F+ GI+ R G + + + I +N+ FD Sbjct: 59 DNI---GAEFVHGISRAVMDRYGNAVSVVLSDFMADVNKSDK--IVAHNLDFDRSVVSAE 113 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANG 168 +R + R + + + + + ++ P+ KL++L G Sbjct: 114 LFRMG-------SADDARRLMSFNSLCTM-KSTTNLVRIPNSYGSYKWPKLEELHKFLFG 165 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198 NAH A DV A + + + EK Sbjct: 166 HVFENAHHAMCDVDAMVKCYFTLLEKHASN 195 >gi|317133746|ref|YP_004089657.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450208|gb|ADU23771.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 284 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 73/236 (30%), Gaps = 44/236 (18%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVR--VDRQW--EKIESTEVFFCKPADDYLPDPEAVFI 60 + D ET GR QFAG++ +D+ + IE + + I Sbjct: 24 ICVIDLETTGRSAKDSYVFQFAGLKCIIDKSLTPKIIE---SLCVFIKPEVPLNERITEI 80 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG T + E RI +F + CI+ +N F++ + ++ RN Sbjct: 81 TGFTNEDLKDK-ADEETVFPRIKKFM---DNCIMCSHNTAFEESFMNAMYARNGC----- 131 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179 D L + R ++ S KL +A GI HDA+ Sbjct: 132 -VFKPAEIIDTLKMSRDLH-------------KEEKSHKLGVIAERYGIADGVKFHDARD 177 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 D L+ + + +TP VH + R Sbjct: 178 DTIICGRLLSRF-------------LSEYVDAKNDDQSKKITPKVHSVSYWEGKRH 220 >gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103] gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103] gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355] Length = 223 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + T F +P L PEA+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A G+E A Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACKAAGMEFDSSQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTQQTATLFCELVNR 200 >gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] Length = 834 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 29/203 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + I D E G A+ Q V ++ E +++ + + +T Sbjct: 13 SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 67 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + ++ ++ + C+ +N++FD + Sbjct: 68 GITDEQLAKAP-DFSQVAQEVFSLIED---CVFVAHNVKFDANLLAEQLFMEG------- 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ R D +++ + Y + L +LA A ++ +AH A +D Sbjct: 117 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADALALDLADAHTAISDA 163 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 YAT L ++ K L + + + Sbjct: 164 YATAQLFLKLKAKMKSLPKEVLE 186 >gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] Length = 180 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 28/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET + A V V + ++S DP+ + I GIT Sbjct: 3 FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P I F I+ +N FD R R Sbjct: 57 PDMVQDQP-SFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGI--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ ++D ++ F P + +L ++ A I + H+A AD YA Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPLEHHHNALADSYAC 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 ++ E + K Sbjct: 155 ARILIAENEHFGEARTKAMMKLAKA 179 >gi|50954845|ref|YP_062133.1| DNA polymerase III subunit epsilon [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951327|gb|AAT89028.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 43/153 (28%), Gaps = 13/153 (8%) Query: 7 IYDYETFGRDVALDRPAQ--FAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++D ET G DV R +D E + EA + GI+ Sbjct: 9 VFDLETTGVDVETARVVTAHIG--LLDEHGEIV---HGRSWLLDPGVEIPAEASAVHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + A G+ A I + + N +D R+ + Sbjct: 64 TELAREKGMDAARGIAGIVDQLRRLFARSVPVVAYNAPYDFSLLDREARRHGIEPLH--- 120 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155 + D L + RA+ F P D Sbjct: 121 -SPGPIIDPLVIDRAVDKFRPGKRTLTVTADHY 152 >gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044] gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 197 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 9/125 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E + I + S + I+ +N FD ++ R Sbjct: 80 INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 SYRWS 121 + Sbjct: 140 RNPFH 144 >gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 827 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 29/203 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + I D E G A+ Q V ++ E +++ + + +T Sbjct: 6 SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + ++ ++ + C+ +N++FD + Sbjct: 61 GITDEQLAKAP-DFSQVAQEVFSLIED---CVFVAHNVKFDANLLAEQLFMEG------- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ R D +++ + Y + L +LA A ++ +AH A +D Sbjct: 110 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADALALDLADAHTAISDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 YAT L ++ K L + + + Sbjct: 157 YATAQLFLKLKAKMKSLPKEVLE 179 >gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM 7299] Length = 279 Score = 70.6 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D ET G +V + + V++ + E I+S E P +T IT Sbjct: 79 FCIVDIETNGSNVNKGQVIEIGAVKL-KNGEIIDSYESLVYAKD----VPPYIQEVTNIT 133 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P V + +F + ++I+FD + F + Sbjct: 134 PSMLKDAPV----LKTVLEEFKIFLEDDVFVAHDIKFDYRFISESFKKYNLGEL------ 183 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + I R A + L L I+ H A +D +T Sbjct: 184 --------------HNRKLCTIDLSKRTIEAQRYGLDFLKDLLHIDIDTQHRAYSDALST 229 Query: 185 LALVWL 190 ++ Sbjct: 230 TYILKE 235 >gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 15/194 (7%) Query: 8 YDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 +D ET G D + DR A V R + Q + + V A + G+T + Sbjct: 32 FDTETTGVDPSGDRLVTAALVWRAEPQADGVRPQSVTTWLADPGVEIPEAASAVHGVTTE 91 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +A +G E + T + N +D R+ Sbjct: 92 RARAEGRPVTEVLTEVSDHLVAAMTAGTPVIAFNASYDLTLMEAELARHGLP--TMRSRL 149 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 G + D + A +L DL G+ A H A+ DV A Sbjct: 150 GRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVHVNEALHTAEVDVAA 200 Query: 184 TLALVWLIREKKPK 197 TL ++ + P+ Sbjct: 201 TLDVLEALAAAHPQ 214 >gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6] gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6] Length = 238 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 48/167 (28%), Gaps = 18/167 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V + + E+ A + G+T ++ Sbjct: 11 FDTETTGVDVESDRIVT-AAVLLVGGGQPTETHTWLA---DPGIDIPEAASAVHGVTSER 66 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +G + + + N RFD R+ S G Sbjct: 67 ARAEGRPAPMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPSLAE--QAG 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 L ++ A KL DLA G++ Sbjct: 125 AEPLVLDPLVMDKRA----------EKYRRGGRKLVDLARHYGVQLG 161 >gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group] gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group] gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group] gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group] Length = 260 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 27/214 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G R +FA D F + + I Sbjct: 61 TILVFDLETTGYFHKDHRIVEFA--LCDLSG---GKNSTFETLVNPERTVPDYVEHLIKI 115 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117 R G+ ++ + F + +N +FD + F R Sbjct: 116 GTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPL 175 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176 +D L + + + + L+ L GI H +AH Sbjct: 176 PA-----DWLFFDTLLLAK----------KMVKAEGKKRRTSLEALREHYGIVSHDDAHR 220 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A DV + + E L + K Sbjct: 221 AMRDVMILSQVFQKMTFDLKLTNEELINEAMKAS 254 >gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685] gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685] Length = 221 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V + D W + + F +P + + PEA+ G Sbjct: 20 VVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N +I +N FD + R Sbjct: 80 IDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAAAERAKLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + ++ + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ISAEIPFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTQQTALLFCELVNR 200 >gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 202 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 24/184 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V++D ET G D DR V ++ + F + E+V I Sbjct: 31 KKRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQD---VFKAESVPIH 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI ++ + +VEAE R +F + +++ FD R Sbjct: 88 GIL-KEGKEEKIVEAEAIIRFLEFIKD---ATLVGHHVDFDIEMINQGLARL-------- 135 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + P L +L I + H A D Sbjct: 136 -----EVGKLKNQAMDTDVMYQKLKYLPQEQHS----SLDELCDIYKIRKSDRHTASGDA 186 Query: 182 YATL 185 + T Sbjct: 187 FITA 190 >gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum] Length = 265 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 52/181 (28%), Gaps = 30/181 (16%) Query: 1 MTNHFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F+ D ET G + R + + + T + Sbjct: 1 MKVTFL--DVETTGLLRDSRARIIELGF-SSWENGKLLRKTSTL---IKGADIVPDNISK 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GIT + E E + I ++ +N+ FD Sbjct: 55 INGITTEMLKDAPRFE-EVWKSIK---GDIQGSLLVAHNLAFDVGMVNREL------ILA 104 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 GN D L + R + +S++L ++A GI + N H A Sbjct: 105 DRIPLGNMGIDTLPLSRKM-------------LPELSSYRLGEIAKHMGILNENPHRAMG 151 Query: 180 D 180 D Sbjct: 152 D 152 >gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599] gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599] Length = 230 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 14/188 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G +V D R+ + +P + P++V + + Sbjct: 48 VALDCETTGLNVRQDEIIAIGATRIVGRRLMTRERLELLVRPEREV--SPDSVAVHRLRA 105 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q G+ E R+ F + ++GY R + + + Sbjct: 106 QDVAD-GLPLCEAMERLLMFI--GSRPLVGYYLEFDVAMIDRALKRCFGLTLPQRKIEVS 162 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + D+ + + + +AHDA D Sbjct: 163 AMYYDW---------RFRQLPPYQQHDNADIDLRFATILQTLDLPMRDAHDALNDAVMAA 213 Query: 186 ALVWLIRE 193 +RE Sbjct: 214 LAFIRLRE 221 >gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] Length = 181 Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 10/144 (6%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D ET G V DR + V V VF + A + Sbjct: 1 MKRIIFLDVETTGLFVEHGDRIIEIGCVEV-INGHLTGR--VFHSYFNPEVKITQGAFNV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI L + F +I++F N I +N +FD + Y + + Sbjct: 58 HGIKDDFLLLKPM----FYEKINEFIGFINNSTIIAHNAKFDINFINKEIYLTNFKIKKI 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPD 144 N + D L + R +Y + Sbjct: 114 --QNYANILDSLLLFRKLYPRKKN 135 >gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC 17100] gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC 17100] Length = 241 Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 28/189 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + A V + + ++ + EA I G+T Sbjct: 4 LVLDTETTGLDPKSGHRIIELACVEL-HNYIPTGVFWHWYF--NPERSVPREATAIHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + I + I +N FD + F + Y Sbjct: 61 DGFLADKPL-FGAIAPDIVKVLEGARLII---HNASFDVGFLNFEFQKLGYQQPISMERV 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + SP+ L L GI++ H A D Sbjct: 117 T----DTLALARRKHPGSPN--------------NLDALCRRYGIDNSTRTKHGALLDSE 158 Query: 183 ATLALVWLI 191 + + Sbjct: 159 LLADVYLRL 167 >gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] Length = 223 Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 28/219 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D+ + + T F +P + + +P A+ G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213 A D T L + + + + + + Sbjct: 183 ALYDTNQTALLFCELVNRWKRLGGWPLALEESSLEDTSA 221 >gi|134046188|ref|YP_001097673.1| exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] gi|132663813|gb|ABO35459.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] Length = 189 Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 14/189 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G + + AQ + + D I+ E + K +P+A + G++ Sbjct: 3 VFLDTETTGLEP--GQIAQISYIISDDDLN-IQKAENIYFKVKS---MEPKAQSVHGLSI 56 Query: 66 QKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDSYRWS 121 +K +G A+ S +I + I+ +N+ FD + + F R YD ++ Sbjct: 57 EKLESLSEGKSFADHSTQILDDINQK---ILICHNVPFDYKFLNSEFVRCGIEYDPKKFC 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N + + P + S L++ G HD++ D Sbjct: 114 TMNHYTNLCGIPNPYRPGYKWPRLEETLDFLSIEKSEVLKNALNLFGNTTG-FHDSRFDS 172 Query: 182 YATLALVWL 190 + Sbjct: 173 MGLFMIYKE 181 >gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 296 Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 30/194 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV D ET G D ++ + ++ D + E F D + +TG Sbjct: 127 KTFVFLDIETDGLDEKTNKIIEIGAIKSDSK-------EEFHKIVKIDTKLPKNIIELTG 179 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++ G E + + +F + + + I+FD + N D Sbjct: 180 ITDKEL-ESGENIKEILKELKEFIGLED---LVGYGIKFDIKFINRKLKLNGLDVL---- 231 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N WDL+D ++ +F + +KL+ + GI+ H A D Sbjct: 232 --TNKTWDLMDFVKREKSFLEN-------------YKLETVLKEYGIDKKVPHRALEDSK 276 Query: 183 ATLALVWLIREKKP 196 L +++ + Sbjct: 277 LIYELSEKVQKFQE 290 >gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1] gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1] Length = 223 Score = 70.2 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 21/206 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG- 62 FV+ D ET G + ++D F V+++ Q +I + ++ K + D + + + G Sbjct: 38 SFVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKK---DFKTIPVHGL 94 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I ++A V +F++R+ ++F I+ +++ FD D + Sbjct: 95 IGNEEA----VPLEQFAKRVLEYFENN---ILVGHHLGFDLEMLEKALKPFGLDKIQNKC 147 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + S LD G+ + L L I+ + H A D + Sbjct: 148 IDTMSLAIRLD----------HGLMADRNYIDFKDYSLDSLCQRYDIKTDDRHTAGGDAF 197 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208 T L+ + + K + K Sbjct: 198 LTANLLLKLLKAAQKKGIMNWGTLRK 223 >gi|229060993|ref|ZP_04198347.1| exonuclease [Bacillus cereus AH603] gi|228718362|gb|EEL69996.1| exonuclease [Bacillus cereus AH603] Length = 221 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 11/135 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FVI D ET G D+ + + + D + + EA I G Sbjct: 63 DQFVILDTETTGL-TLRDQIIEISVI--DLAGKIL-----LDSLVKPTTNIPAEAASIHG 114 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + ++ YN N S Sbjct: 115 ITNEMVHDAP-SWTAIYKELREV--TVGKTLLIYNAEFDLGMIENTCIANNVEFKNFKST 171 Query: 123 DNGNSRWDLLDVMRA 137 D +D R Sbjct: 172 CIMEMYVDYVDSKRW 186 >gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 223 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 28/219 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D+ + T F +P + + +P A+ G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213 A D T L + + + + + + Sbjct: 183 ALYDTNQTALLFCELVNRWKRLGGWPIALEENSLEDASA 221 >gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus HD100] gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100] Length = 295 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 33/185 (17%) Query: 7 IYDYETFGRDVALDRPAQFAG--VRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGI 63 I D ET G + D + ++ E + T+ + PE +TGI Sbjct: 48 ILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDPGKPISPEIQALTGI 107 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + +++ +I +N +FD + Sbjct: 108 TDEMVAGKQIDWTAVDALLNE------CQLIIAHNAKFDRPF------------------ 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D ++ Q D G TS KL+ L + +G ++H A DV A Sbjct: 144 -----IDRRSKTSPERVWACSFKQVEWSDKGFTSPKLELLNIYHGF-FTDSHRAINDVDA 197 Query: 184 TLALV 188 L L+ Sbjct: 198 LLYLL 202 >gi|305666543|ref|YP_003862830.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708810|gb|EAR01045.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 222 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 23/187 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+++D ET G D+ DR + V I + + K + E+V I GI Sbjct: 34 FIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQK---IFKAESVEIHGIL 90 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ E I F I+ ++ FD R + + Sbjct: 91 KEGSIEKHTEE----EAIISFLKYIENGILVAHHAAFDIAMINAGLRRMGLPKLKNKVLD 146 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + +D + L L+ + + H + D + T Sbjct: 147 TGVLF----------------KKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLT 190 Query: 185 LALVWLI 191 ++ I Sbjct: 191 GMILLKI 197 >gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 242 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V EA + G+T ++ Sbjct: 13 FDTETTGVDVETDRIVSAAVVVQDAPGT---RPRVSRWLVNPGVPVPREATAVHGLTEER 69 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R G A I + + ++ N FD R+ S ++ Sbjct: 70 LQRTGRWPAPVMYEIAEQLAEQAARGRPLVVMNAP-FDLTLLDRELRRHRASSLERWFEG 128 Query: 125 GNSRW 129 R Sbjct: 129 SPLRV 133 >gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 240 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 62/231 (26%), Gaps = 33/231 (14%) Query: 2 TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 ++ D ET G + R + V + F + D E Sbjct: 1 MKRQIVLDIETTGINKLGVHYYGHRIIEIGAVEI-INRRITGK--NFHVYLNPERFIDQE 57 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A I GI+ A+ + ++ F S + ++ FD + F Sbjct: 58 AFKIHGISNNFLKDKP-TFAQVADKLITFISQSE---LVIHHAPFDIGFIDYEFKLLNRS 113 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174 ++ D L + R I+ L L I+ H Sbjct: 114 MISKTFVQVT---DTLLLARKIFPG--------------KRNSLDALCNRYHIKNIHRTK 156 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 H A D + ++ + + L N +K PL H Sbjct: 157 HGALLDAKILAEIYLIMTGGQTSINFNLTQESNIE--QKYKGKNIYFPLSH 205 >gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 31/109 (28%), Gaps = 7/109 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V A + G+T Sbjct: 13 FDTETTGVDVEEDRIVSAALVVQD---TVGARPRVTRWLVNPGIPVPEGATAVHGLTDDH 69 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 R G A + + + ++ N FD R+ Sbjct: 70 LQRYGRWPAPVMEELARALAEQIAAGRPLVVMNAP-FDLTILDRELRRH 117 >gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1] gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1] Length = 181 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 11/135 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FVI D ET G D+ + + D + + EA I G Sbjct: 23 DQFVILDTETTGL-TLRDQIIEICVI--DLTGKIL-----LNSLVKPTINIPAEAASIHG 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT +K E + + + + ++ YN F N S Sbjct: 75 ITNEKVHDAP-SWIEIYKELCEVTA--GKTLLIYNAEFDLGMIESTCFANNVEFKNFKST 131 Query: 123 DNGNSRWDLLDVMRA 137 D +D R Sbjct: 132 FIMKMYADYVDSKRW 146 >gi|120536881|ref|YP_956939.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] gi|120326715|gb|ABM21024.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 291 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 39/194 (20%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKP----ADDYLPDPEAVF 59 V D ET G D+ + + VD + Sbjct: 48 VWLDCETTGFQAGHDKIIELGLTKGYVDP---ITGELISLVASVSFYEDPGFPLPEIITQ 104 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ITGIT + G ++ ++F+ I+ +N FD + Sbjct: 105 ITGITDEMV--SGRTIDGV--QVREWFTDDP--IVVAHNASFDRPFFE------------ 146 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 SR+ +LD +R + P ++ G S KL+ L G + H A Sbjct: 147 -------SRFPMLDQLRW----ACSMKDIPWQEYGFESTKLEYLLYRLGYFYEG-HRASI 194 Query: 180 DVYATLALVWLIRE 193 D AT L+ + Sbjct: 195 DAIATAFLMSQVPR 208 >gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 233 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET R A VR+D +++ E+ EA I GIT +K Sbjct: 21 FDLETTSVKPKEARIVTSALVRID--GREVDKREMLA---DPGVEIPEEAAKIHGITTEK 75 Query: 68 ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFD 102 A +G E + I+Q + +I YN Sbjct: 76 ARAEGRPHEEVLKETVDSIYQAWDE-GLTLIVYNAAYDL 113 >gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 243 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 26/196 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + +R + V +++ + + D + A +TG+T Sbjct: 4 IILDTETTGLEWKKGNRIVEIGCV---ELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ + F I +N FD + N + + Sbjct: 61 LEFLDDKPG-FAQIADEFLAFIDGAELII---HNAAFDLGFLDNEL--SLLGPQYGKITD 114 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182 + D L + R + + L L G++ H H D Sbjct: 115 RCTVIDTLAMARERFPGQRN--------------SLDALCKRLGVDNSHRALHGGLLDAQ 160 Query: 183 ATLALVWLIREKKPKL 198 + + + ++ Sbjct: 161 ILGDVYIALTSGQEEI 176 >gi|325127521|gb|EGC50447.1| oligoribonuclease [Neisseria meningitidis N1568] gi|325129519|gb|EGC52346.1| oligoribonuclease [Neisseria meningitidis OX99.30304] gi|325201497|gb|ADY96951.1| oligoribonuclease [Neisseria meningitidis M01-240149] gi|325207477|gb|ADZ02929.1| oligoribonuclease [Neisseria meningitidis NZ-05/33] Length = 187 Score = 70.2 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 240 Score = 70.2 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ +I D ET G DR +FAG+ + + ++ + P D EA Sbjct: 1 MSKRQIILDTETTGLYAEGGDRLVEFAGLEM-INRQMTDNNLHLYIHPERDM--PEEAAK 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R S Sbjct: 58 VHGLTIEVLEEKNAPPFAEVGRQIADFIRDAELII---HNAKFDIGFLNMEFRRMGLPSI 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRLSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176 >gi|308389962|gb|ADO32282.1| putative oligoribonuclease [Neisseria meningitidis alpha710] Length = 215 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 32 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 92 THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151 Query: 115 YDSYRW 120 + Sbjct: 152 NYFHYR 157 >gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] Length = 253 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 10 MIQRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 66 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + AE R+I F I +N +FD + F R + Sbjct: 67 VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 124 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 166 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 167 ALIDCELLGEVYLAMTRRQ 185 >gi|46255199|ref|YP_006111.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27] gi|46198048|gb|AAS82458.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27] Length = 1649 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 24/187 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D E D + + A V D + +P PD E +TGI Sbjct: 9 VALDLEATSTDPSEAEVLEVAAV--DGEGRVFHRYLATQ-RPLP---PDHEVFQLTGIPY 62 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ V E + F ++G+N +R+D + Sbjct: 63 EEYEAKKVAPKEALEELLAFL--GGRPLLGHNLLRYDLPLLQRHLEEAGLP--------- 111 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVYAT 184 + + LD +R + +P+ G ++L DL A G AH A D AT Sbjct: 112 RWQGEALDTLRLAHLL------FPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQAT 165 Query: 185 LALVWLI 191 LA+ + Sbjct: 166 LAVFHRL 172 >gi|55978361|ref|YP_145417.1| hypothetical protein TTHB178 [Thermus thermophilus HB8] gi|55773534|dbj|BAD71974.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 296 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 24/187 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D E D + + A V D + +P PD E +TGI Sbjct: 9 VALDLEATSTDPSEAEVLEVAAV--DGEGRVFHRYLATQ-RPLP---PDHEVFQLTGIPY 62 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ V E + F ++G+N +R+D + Sbjct: 63 EEYEAKKVAPKEALEELLAFL--GGRPLLGHNLLRYDLPLLQRHLEEAGLP--------- 111 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVYAT 184 + + LD +R + +P+ G ++L DL A G AH A D AT Sbjct: 112 RWQGEALDTLRLAHLL------FPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQAT 165 Query: 185 LALVWLI 191 LA+ + Sbjct: 166 LAVFHRL 172 >gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment) [Mycoplasma haemofelis str. Langford 1] Length = 216 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 32/192 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAVFIT- 61 + + D ET G + + + R ++++ F +P P T Sbjct: 20 YCVLDIETTGTSYKTSEITEISIHKY-RNGKRVDKYHSFVKISRPLP-----PFIRIFTP 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + R+G + + F + ++ +N + FD + + + Sbjct: 74 HITDELLAREGKDLDVVIKEVKDFTK--GSILVAHNGVTFDLLFLKAACIKYGLKPLSNP 131 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKA 179 ++D +R S L D+ + AH A Sbjct: 132 ---------IIDTLRLSR----------STFPNERYHTLGDVCRRMQVNYDEDRAHSADY 172 Query: 180 DVYATLALVWLI 191 DV + W Sbjct: 173 DVDVLWQVFWNF 184 >gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146] gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146] Length = 221 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 57/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V R++ + + F P + PEA+ G Sbjct: 20 VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELSPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E I + N ++ +N FD + R Sbjct: 80 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAARAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + ++ + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ISAQIPFDSAQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTQQTATLFCELVNR 200 >gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA polymerase III [Tsukamurella paurometabola DSM 20162] gi|296027198|gb|ADG77968.1| Exonuclease RNase T and DNA polymerase III [Tsukamurella paurometabola DSM 20162] Length = 198 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 54/203 (26%), Gaps = 35/203 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M + V D E G D+ DR + A + D + D L P Sbjct: 1 MDDKLVWVDCEMTGLDLTSDRLIEIAALVTDGDLNILGEGVDLVIHVDDAALDAMPPVVQ 60 Query: 59 FIT---GITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYR 112 + G+T + R V E + + P T + N+I D + Sbjct: 61 DMHAKSGLTDE-VRRSTVTVREAEEAVLAYLREHIEPGTVPLAGNSIATDRRFIAQEM-- 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 +G + ++DV + Sbjct: 118 --------PELDGFLHYRMVDVSSIKELCRRWYPRIYFGQPDK----------------G 153 Query: 173 NAHDAKADVYATLALVWLIREKK 195 AH A AD+ ++ + R Sbjct: 154 LAHRALADIRESIRELKYYRSTA 176 >gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057] gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057] Length = 168 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 28/196 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V ++ E +S +P +Y + Sbjct: 1 MRNFAAIDFET--ANEQRCSVCSVGVVIV-KEGEITDSYYSLI-RPEPEY-YTYWTTRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T V + R I + +N FD+ + + + Sbjct: 56 GLTLADTAGAPV-FPDVWREIAPRIE---GLPLVAHNKAFDE---------SCLKAVFRT 102 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D ++A G ++L +A G + H+A AD Sbjct: 103 YSMDYPDYDFYCTLQASRRV----------IKGLPDYQLHTVAACCGYKLERHHNALADA 152 Query: 182 YATLALVWLIREKKPK 197 A + + + Sbjct: 153 EACAWIAKAVFFTANE 168 >gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare ATCC 13950] Length = 330 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 69/252 (27%), Gaps = 32/252 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D E +S P P + G+T Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSL---LNPGVDPGP--THVHGLTAA 73 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + Sbjct: 74 MLEDQPQ-FADIAPDVIDVLR---GRTLVAHNVAFD-------------------YAFLA 110 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + +L D+ + + D G + +L+ LA + HDA D Sbjct: 111 AEAELADIELPVDSVMCTVELARRLDLGVDNLRLETLAAHWSVTQERPHDAFDDAMVLTG 170 Query: 187 LVWLIRE--KKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ + + ++ ++ + + + PL ++ V Sbjct: 171 VLASALKLARDGDVWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMP--CPYLNPGPYVG 228 Query: 245 WHPRYKDSVIGC 256 P + + Sbjct: 229 GRPLVQGMRVAL 240 >gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 251 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 VI D ET G R + + E I+ F D A + Sbjct: 22 VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 75 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + + + QF I +N FD + + + + Sbjct: 76 GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 ++ D L + R + + L L I+H N H A Sbjct: 129 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 174 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 D + + + LF + ++++++ Sbjct: 175 DAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQ 209 >gi|25027895|ref|NP_737949.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens YS-314] gi|259506288|ref|ZP_05749190.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens YS-314] gi|23493178|dbj|BAC18149.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166068|gb|EEW50622.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens YS-314] Length = 252 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 30/187 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A V + + A + GIT + Sbjct: 40 FDLETTAANPFEARIVTSAMVTITNAG---ATPLELLA--DPGVEIPEGATAVHGITTEY 94 Query: 68 ALRDGVVEAEFSRR-IHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A G E I + +I YN R + Sbjct: 95 AREHGQPHEEVLAETIRRIQEGWGNNQALIVYNAPYDLTVLRR---------------LS 139 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G+ D L + P + L DL ++ NAH+A +D A Sbjct: 140 GDFTIDGL-------VYDPYTVDRIKDPYRKGKRTLADLCAHYEVQLGNAHEATSDALAA 192 Query: 185 LALVWLI 191 + W Sbjct: 193 ARIAWKQ 199 >gi|119774662|ref|YP_927402.1| DNA polymerase III subunit epsilon-related 3'-5' exonuclease-like protein [Shewanella amazonensis SB2B] gi|119767162|gb|ABL99732.1| DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like protein [Shewanella amazonensis SB2B] Length = 228 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 20/179 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D E G D D+ V +D +++ E + ++ I GIT Sbjct: 44 LALDLEMTGLDPGRDQILAIGVVPIDGGIIQLQGAESVLVEIQGSV---GQSAVIHGITD 100 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + A+ + Q N I+ ++ D + R R+ Sbjct: 101 RELHNA-LPLADAMNWLMQKM---NGRILVAHHAPLDLAFIRANMSRSL------GISMP 150 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R D I S +L G+ +AH+A D + Sbjct: 151 MLAIDTLALERQRLLRIHDAI-------QEGSLRLGASRQRYGLPVYDAHNALTDALSC 202 >gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] Length = 230 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + + + + + + EA + G++ Sbjct: 4 IVLDTETTGLDALRGDRLVEIGCV---EMFNHMPTGQTYHVYINPERDMPQEAFAVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F+ F + + +N FD + R + Sbjct: 61 SEFLSDKPL----FAAVAEDFLTFIGDAPLIIHNASFDIGFINMELERVKRAAIPRERL- 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 D L + R + S +L DL I++ H A D Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|171059184|ref|YP_001791533.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170776629|gb|ACB34768.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii SP-6] Length = 218 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 14/188 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G DV D VR+ +P L ++V + + Sbjct: 42 VALDCETTGLDVGRDEIIAIGAVRIVGNRIMTSERLELLVRPEKRKL-SADSVRVHRLRE 100 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q G+ E ++ F + ++GY +R + + + Sbjct: 101 QDVA-QGLKPEEAVMQLMHFI--GSRPLVGYYLEFDLAMINRVAWPMLGMGLPQPRIEVS 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + D Y + + L + +AHDA D Sbjct: 158 SLYHDYKHRQLLPY----------QQQSVNIDLRFDTLMKDLDLPQRDAHDALNDAVMAA 207 Query: 186 ALVWLIRE 193 +R Sbjct: 208 LAYLKLRR 215 >gi|313768210|ref|YP_004061890.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1] gi|312598906|gb|ADQ90930.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1] Length = 443 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 35/207 (16%) Query: 5 FVIYDYETFGRD-------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 ++ +D+ET G R + R + +++ + +D+ Sbjct: 6 YIAFDFETSGLPEGRRPVTPETLHQFDSCRAVSLSAARFSSRGRLVDTFDAIVY--PNDF 63 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 ++ + GIT Q+A R+G E +F P T + +N +FD R+ Sbjct: 64 QISQGSIDVHGITQQRAEREGRPFTEVFLDFVRFIG-PRTTTMVAHNAKFDTSVLRSEMI 122 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIE 170 R+ D + N +L R+ KL L G Sbjct: 123 RHRLDLHLIENLNFRCTMEL------------------YRERFLKPIKLGVLYEQIFGQP 164 Query: 171 HVNAHDAKADVYATLALVWLIREKKPK 197 NAH++ AD A + I + Sbjct: 165 FENAHNSLADCIACGRVYPYIIGHERT 191 >gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 219 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + + I+ +N FD ++ R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T + + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIAFDGTQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAELFCEIVNR 200 >gi|210622633|ref|ZP_03293293.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275] gi|210154134|gb|EEA85140.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275] Length = 273 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 66/219 (30%), Gaps = 32/219 (14%) Query: 1 MTNHFVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M ++++D E G + + Q V++D + I + + F KP Sbjct: 4 MME-YIVFDLEFNQGFNKKTNKTFSDNACPFEIIQLGAVKLDSNFNIIAAFDTFI-KPCL 61 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 P ITGI + E ++ +F + + + Sbjct: 62 YTSMHPYVAKITGICMEDLENAP-TFKEAFKKFTEFVASDDPIFCVWGKSDLR------E 114 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 YRN S D+ A S L++ +A + Sbjct: 115 LYRNIKYHNLPDLSLPKSYIDVQYYASDF-----------INHTTAQSIGLENAVIALNL 163 Query: 170 EHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 E A H+A D Y T + I K K Y+Y + Sbjct: 164 EDTVAYHNALNDAYYTAKVFASINPKAIKPNIYIYTNLS 202 >gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont of Hydra magnipapillata] Length = 236 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 33/237 (13%) Query: 6 VIYDYETFGRDVAL----DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G DR + V V+R+ + D A+ + Sbjct: 4 IVLDTETTGFYANHPDNPDRMVEIGCVELVNRKL----TGNNLHFYLNPGRDSDEGALRV 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+T Q E E ++++ + I +N FD + R ++ Sbjct: 60 HGLTTQFLSDKPRFE-EIAQQLVDYV---GGAEIIIHNAPFDLSFLDMELGRTGRKPFKT 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 D L + + ++ L L +++ H A Sbjct: 116 CVAG---VLDTLVMAKEMFPG--------------KRNSLDALCDRLEVDNSGRTLHGAL 158 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASR 234 D + + + L + + + +D++++ P++ + A+ Sbjct: 159 LDAELLADVYINMTRGQDALIMESSAPQEAGIVVEQLDLRSIQLPVLEANAQEMAAH 215 >gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 218 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 50/188 (26%), Gaps = 16/188 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G +VA D+ V++ KP + E+V I + Sbjct: 43 VVIDCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPDKEV--SAESVKIHRLRE 100 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E ++ + I + FD I +R Sbjct: 101 LDIANGLDPEVAVAK----LMQFIGSRPIVGYYLEFDMAMLHKIIWRMLGQGLPQPKIEV 156 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ + + + L + +AHDA D T Sbjct: 157 SAMYYEYKNAQLPINLRGQM----------IDLRFDTLMKDLNLPVRDAHDALNDAVMTG 206 Query: 186 ALVWLIRE 193 +R+ Sbjct: 207 MAFIKLRQ 214 >gi|329120336|ref|ZP_08249004.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200] gi|327462677|gb|EGF09000.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200] Length = 184 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ D E G DR + A + D + + V+ +D+ L D Sbjct: 7 NNLCWLDMEMTGLSPETDRIIEVAVIITDSDLNVLAQSPVYAVHQSDEVLDAMDEWCTAT 66 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNFY 115 G T Q+ EAE + + F + + N++ D + + R Sbjct: 67 HGRTGLTQRVRESQYTEAEVEQNLLDFIAAWIPAQASPMCGNSVHQDRRFMQKYMPRLEA 126 Query: 116 DSYRW 120 + Sbjct: 127 YFHYR 131 >gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] Length = 475 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 27/200 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D ET G D + A + V ++ + + D P V +TGI+ Sbjct: 18 FAILDVETTGAASGADELTEVAMMVV-QEGRALAHLQSL---VHTDRPIPPAIVALTGIS 73 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + ++ +N+RFD + Sbjct: 74 NELVADAP-SARTVIERTARLLE---GTVMVGHNVRFDRSFLGAAADAAGI--------- 120 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +LD + D + +L LA + +H A ADV T Sbjct: 121 TLPEVPVLDTLTLSRVLL---------DGEVPNHRLATLAHYLQLPP-PSHRAMADVVTT 170 Query: 185 LALVWLIREKKPKLFEYLYD 204 +AL+ + E+ L + Sbjct: 171 VALLHRLIERAGALGVTTLE 190 >gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] Length = 213 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 63/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D+ + T F +P + +P A+ TG Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + N R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D I L +A GI A Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVAAGIPFDGKQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + K Sbjct: 181 HGALYDTNRTALLFCELVNK 200 >gi|295089927|emb|CBK76034.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Clostridium cf. saccharolyticum K10] Length = 347 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 29/238 (12%) Query: 2 TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 H+++ D E GR+ ++DR + V++D + +P Sbjct: 1 MGHYIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEF-SRLVRPQVYRTL 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + +T +T ++ R+G + +FF D + + Sbjct: 60 HYKISEVTHLTAEQLEREGQKFETAVK---EFFDWCGNDCRFCTWGSMDLTELQRNMVYH 116 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + + +DL + + L L GIE Sbjct: 117 GME---LPFQKPLYYFDLQKI-------------YSLIQGNTKRESLDTAVLEMGIEEER 160 Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 H A D + T ++ + + + Y+ + I ++ VS + Sbjct: 161 PFHRALDDAWYTGLVMGKMNFYSMMEYISVDYYQTPETEEEEIYLEFPDYSKFVSRTW 218 >gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] Length = 248 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + + T F +P + PEA+ G Sbjct: 52 VVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQPEALAFNG 111 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 112 IDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAAAERASLK 171 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L A G+ A Sbjct: 172 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACTAAGMPFDSSQA 212 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 213 HSALYDTEQTALLFCELVNR 232 >gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269] gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269] Length = 899 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 21/213 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-TGI 63 VI+D ET G V D Q A V + R ++ F A + + I I Sbjct: 518 IVIFDTETTGLSVFEDDILQIAAVTICRG--EVVRGSEFKVFIATEREIPRKLGDIDNPI 575 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + AE + F + + +N +D + R Sbjct: 576 IEEMKHNRLLGHAEALQL---FMNYVGDRTLLGHNADYDYHILDYNLRRYL--------- 623 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + + + +KL+ L +E N+H A ADV+A Sbjct: 624 ------PQVSLAERCPKYFDSLKLIRLLEPDLREYKLKYLLSVLHLEGENSHLADADVHA 677 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 T +V K + + + ++++ + Sbjct: 678 TCNVVAHCYRKAADIIGSQRQFIVQKRVQERAE 710 >gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168] gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168] Length = 214 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 65/209 (31%), Gaps = 26/209 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + R Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGTQAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDY 205 A D T L I + +L + Sbjct: 183 ALYDTERTAVLFCEIVNRWKRLGGWPLAT 211 >gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] Length = 545 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63 F +D ET + Q V V R + E + C+P EA V I GI Sbjct: 166 FAAFDVET--ANEDTGSIIQLG-VAVVRGGKVTERY-SWMCRPPKGLEYFDEANVAIHGI 221 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E ++ +F V + +N RFD + Sbjct: 222 TAADVAGEP-SFPE---QLAKFVDVVGDLDVVAHNARFDFTALSRACRAEGIPA------ 271 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + G + KL LA A G N HDA AD A Sbjct: 272 ---PKLNFACTYMWARQM----------QLGLPNLKLPTLAEAAGASLENHHDATADAVA 318 Query: 184 TLALVWLIREKKP 196 + + E++ Sbjct: 319 CAEVALWLMEQQR 331 >gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 221 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V +D++ IE + F +P +PEA+ G Sbjct: 27 VVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNG 86 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LRD E E ++I ++ II +N FD + N R Sbjct: 87 IDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGLK 146 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + L + AH Sbjct: 147 QNPFHPFSTFDTAALSGLALGQTVLAKAC-----------------LTAGLNFDMSRAHS 189 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 190 ALYDTQQTARLFCELVNR 207 >gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 827 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 29/203 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + I D E G A+ Q V ++ E +++ + + +T Sbjct: 6 SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + ++ ++ + C+ +N++FD + Sbjct: 61 GITDEQLAKAP-DFSQVAQEVFSLIED---CVFVAHNVKFDANLLAEQLFMEG------- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ R D +++ + Y + L +LA A ++ +AH A +D Sbjct: 110 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADALALDLADAHTAISDA 156 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 YAT L ++ K L + + + Sbjct: 157 YATTQLFLKLKAKMKSLPKEVLE 179 >gi|291087532|ref|ZP_06346731.2| exonuclease family protein [Clostridium sp. M62/1] gi|291074686|gb|EFE12050.1| exonuclease family protein [Clostridium sp. M62/1] Length = 350 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 29/238 (12%) Query: 2 TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 H+++ D E GR+ ++DR + V++D + +P Sbjct: 4 MGHYIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEF-SRLVRPQVYRTL 62 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + +T +T ++ R+G + +FF D + + Sbjct: 63 HYKISEVTHLTAEQLEREGQKFETAVK---EFFDWCGNDCRFCTWGSMDLTELQRNMVYH 119 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + + +DL + + L L GIE Sbjct: 120 GME---LPFQKPLYYFDLQKI-------------YSLIQGNTKRESLDTAVLEMGIEEER 163 Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 H A D + T ++ + + + Y+ + I ++ VS + Sbjct: 164 PFHRALDDAWYTGLVMGKMNFYSMMEYISVDYYQTPETEEEEIYLEFPDYSKFVSRTW 221 >gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] Length = 180 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G + AGV V E + KP ITGI Sbjct: 3 FVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPKRHVPIS--ITMITGI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + R + F ++ N FD + + + Sbjct: 61 NNLMLEDK-LPIEIVLPRFYDFVRDR---VLVIQNAPFDLSFLDYFGKKIGIGELPNPF- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + R+++ L + GI + H A D A Sbjct: 116 -----VDTISLSRSLF---------------RGRHNLDIILARLGIFCEDRHRALGDAVA 155 Query: 184 TLALVWLIREK 194 T + + Sbjct: 156 TAKAFIKMVKM 166 >gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163] gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163] Length = 223 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D+ + + T F +P + + +P A+ G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAADRCSLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTNQTALLFCELVNR 200 >gi|254804313|ref|YP_003082534.1| oligoribonuclease [Neisseria meningitidis alpha14] gi|254667855|emb|CBA03898.1| oligoribonuclease [Neisseria meningitidis alpha14] Length = 215 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + +R + A + D + +EV+ +D+ L D Sbjct: 32 KNNLCWLDMEMTGLNPETNRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 92 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151 Query: 115 YDSYRW 120 + Sbjct: 152 NYFHYR 157 >gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21] gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21] Length = 312 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 51/186 (27%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62 + D ET G D D+ + V D + +I + D +P PE V ITG Sbjct: 55 LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGVPIPEEVKEITG 114 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ F + + +I +N + Sbjct: 115 ISDDMVRGQ-----AFDDPFINLLAEKSHLVIAHNAAFDRKFVEARFPAFTKLPW----- 164 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + Q + +S L+ L +NAH A D Sbjct: 165 -------------------ACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAE 205 Query: 183 ATLALV 188 L L+ Sbjct: 206 GVLGLL 211 >gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627] gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627] Length = 215 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G+E A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMEFDSNQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380] gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380] Length = 226 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V R+D+ + + T F +P + PEA+ G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E I N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 192 HSALYDTMQTATLFCELVNR 211 >gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 223 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D+ + + T F +P + + +P A+ G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTNQTALLFCELVNR 200 >gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14] gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14] Length = 334 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 59/219 (26%), Gaps = 33/219 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+N F++ D ET + Q V V E + + D D Sbjct: 1 MSNSDFIVLDVET--ANADYASICQIGLVEV-VAGEVVSQEAIL---VNPDDYFDGFNTS 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GIT + +H S + I ++ FD R +S+ Sbjct: 55 IHGITADHVCGAPLFH-----EVHAALSQRLSGSIIVHHGPFDRVSISRACERCGIESFD 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 W + + + + L+ LA GIE HDA Sbjct: 110 VQWLDNQRVV-----------------RRVWEQFSKSGYALKSLAAFFGIEF-QHHDALQ 151 Query: 180 DVYATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLI 215 D AT + + + + + Sbjct: 152 DAIATNEIFRRALNESGTTAADWLSRIKQSLPTTAKTIS 190 >gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] Length = 256 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 18/201 (8%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY----LPDPEA 57 +I D ET G + R + V + + T + KP D + E Sbjct: 14 KRLIILDTETTGINPREGHRIVEIGCVEM-INRQLTGRTYHAYIKPLDQRGQVFQMEQEV 72 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + I G+T + + FS+ +H+F + +N +FD + + F + ++S Sbjct: 73 INIHGLTNEFLADKPI----FSQVVHEFIDFIRGAELVIHNSKFDVGFMDHEF--SLFNS 126 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 S D D+ + + + + D A +++ L H A Sbjct: 127 MGRSQDKVPMTEDICTITDTLKVSKDELGSPKTLDYLARFYRVDKLVDR------TYHGA 180 Query: 178 KADVYATLALVWLIREKKPKL 198 D + + K+ Sbjct: 181 LIDAQLLAYVYIEMTRKQSSF 201 >gi|188994147|ref|YP_001928399.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277] gi|188593827|dbj|BAG32802.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277] Length = 260 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 29/173 (16%) Query: 5 FVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 F++ D ET G + P +D ++ IE C+ + D P Sbjct: 69 FLVIDTETTGLPADETQFISGVDAPAPVSVGWQLLDFRFRCIEEVV---CRLSTDEPVSP 125 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 EA + GIT G E R+ S ++ +N+ F R + Sbjct: 126 EAAALHGITDASL--HGDDPHEVYARLLGAVSKAK--VLSAHNLAFHRSVLVYDMRRRGF 181 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 D + D M G+ + ++KL L G Sbjct: 182 DP------SPLFSLDDYCTM-------EAGVDFTHLYGSCGTWKLPRLTELFG 221 >gi|72161306|ref|YP_288963.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX] gi|71915038|gb|AAZ54940.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 210 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 46/176 (26%), Gaps = 26/176 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D+ET + VRV ++ PA + + + + Sbjct: 1 MHDTWTAIDFET--ANRNQGSVCAVGLVRV-TDGRIVDRYTTLVRPPAPVDHFEQDNIAV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP+ + I +F +N FD R Sbjct: 58 HGITPEHVADAPA-WPQVHTTILEF---AAGSPFVAHNAVFDMGVIRAACAHAGLPEPSL 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + LD+ R + + +L + G + H Sbjct: 114 HYA------CSLDIARRTW-------------PALRNHRLPTVCRTIGYDLRRHHT 150 >gi|34540032|ref|NP_904511.1| exonuclease [Porphyromonas gingivalis W83] gi|34396343|gb|AAQ65410.1| exonuclease [Porphyromonas gingivalis W83] Length = 260 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 29/173 (16%) Query: 5 FVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 F++ D ET G + P +D ++ IE C+ + D P Sbjct: 69 FLVIDTETTGLPADETQFISGVDAPAPVSVGWQLLDFRFRCIEEVV---CRLSTDEPVSP 125 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 EA + GIT G E R+ S ++ +N+ F R + Sbjct: 126 EAAALHGITDASL--HGDDPHEVYARLLGAVSKAK--VLSAHNLAFHRSVLVYDMRRRGF 181 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 D + D M G+ + ++KL L G Sbjct: 182 DP------SPLFSLDDYCTM-------EAGVDFTHLYGSCGTWKLPRLTELFG 221 >gi|269213888|ref|ZP_05983052.2| oligoribonuclease [Neisseria cinerea ATCC 14685] gi|269145276|gb|EEZ71694.1| oligoribonuclease [Neisseria cinerea ATCC 14685] Length = 188 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 10/130 (7%) Query: 1 MT---NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55 M N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 1 MMQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDE 60 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIF 110 G T Q+ EAE +++ F S + N+I D + Sbjct: 61 WNTATHGRTGLTQRVRESSYTEAEVEQKLLDFMSEWIPERATPMCGNSIHQDRRFMVKYM 120 Query: 111 YRNFYDSYRW 120 + + Sbjct: 121 PKLENYFHYR 130 >gi|59800509|ref|YP_207221.1| oligoribonuclease [Neisseria gonorrhoeae FA 1090] gi|194097641|ref|YP_002000679.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945] gi|239998172|ref|ZP_04718096.1| oligoribonuclease [Neisseria gonorrhoeae 35/02] gi|240013354|ref|ZP_04720267.1| oligoribonuclease [Neisseria gonorrhoeae DGI18] gi|240015799|ref|ZP_04722339.1| oligoribonuclease [Neisseria gonorrhoeae FA6140] gi|240079936|ref|ZP_04724479.1| oligoribonuclease [Neisseria gonorrhoeae FA19] gi|240112143|ref|ZP_04726633.1| oligoribonuclease [Neisseria gonorrhoeae MS11] gi|240114889|ref|ZP_04728951.1| oligoribonuclease [Neisseria gonorrhoeae PID18] gi|240117093|ref|ZP_04731155.1| oligoribonuclease [Neisseria gonorrhoeae PID1] gi|240120427|ref|ZP_04733389.1| oligoribonuclease [Neisseria gonorrhoeae PID24-1] gi|240122729|ref|ZP_04735685.1| oligoribonuclease [Neisseria gonorrhoeae PID332] gi|240124920|ref|ZP_04737806.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679] gi|240127431|ref|ZP_04740092.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035] gi|254492949|ref|ZP_05106120.1| oligoribonuclease [Neisseria gonorrhoeae 1291] gi|260441295|ref|ZP_05795111.1| oligoribonuclease [Neisseria gonorrhoeae DGI2] gi|268594024|ref|ZP_06128191.1| oligoribonuclease [Neisseria gonorrhoeae 35/02] gi|268596076|ref|ZP_06130243.1| oligoribonuclease [Neisseria gonorrhoeae FA19] gi|268598201|ref|ZP_06132368.1| oligoribonuclease [Neisseria gonorrhoeae MS11] gi|268600546|ref|ZP_06134713.1| oligoribonuclease [Neisseria gonorrhoeae PID18] gi|268602779|ref|ZP_06136946.1| oligoribonuclease [Neisseria gonorrhoeae PID1] gi|268681328|ref|ZP_06148190.1| oligoribonuclease [Neisseria gonorrhoeae PID332] gi|268683499|ref|ZP_06150361.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679] gi|268685805|ref|ZP_06152667.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035] gi|291044651|ref|ZP_06570360.1| oligoribonuclease [Neisseria gonorrhoeae DGI2] gi|293397760|ref|ZP_06641966.1| oligoribonuclease [Neisseria gonorrhoeae F62] gi|81311266|sp|Q5FAH8|ORN_NEIG1 RecName: Full=Oligoribonuclease gi|59717404|gb|AAW88809.1| putative oligo ribonuclease [Neisseria gonorrhoeae FA 1090] gi|193932931|gb|ACF28755.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945] gi|226511989|gb|EEH61334.1| oligoribonuclease [Neisseria gonorrhoeae 1291] gi|268547413|gb|EEZ42831.1| oligoribonuclease [Neisseria gonorrhoeae 35/02] gi|268549864|gb|EEZ44883.1| oligoribonuclease [Neisseria gonorrhoeae FA19] gi|268582332|gb|EEZ47008.1| oligoribonuclease [Neisseria gonorrhoeae MS11] gi|268584677|gb|EEZ49353.1| oligoribonuclease [Neisseria gonorrhoeae PID18] gi|268586910|gb|EEZ51586.1| oligoribonuclease [Neisseria gonorrhoeae PID1] gi|268621612|gb|EEZ54012.1| oligoribonuclease [Neisseria gonorrhoeae PID332] gi|268623783|gb|EEZ56183.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679] gi|268626089|gb|EEZ58489.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035] gi|291011545|gb|EFE03541.1| oligoribonuclease [Neisseria gonorrhoeae DGI2] gi|291611706|gb|EFF40775.1| oligoribonuclease [Neisseria gonorrhoeae F62] gi|317163462|gb|ADV07003.1| oligoribonuclease [Neisseria gonorrhoeae TCDC-NG08107] Length = 187 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +DD L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDDLLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWIPGRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|290580136|ref|YP_003484528.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254997035|dbj|BAH87636.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 300 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 27/190 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D ET G D + + V++D ++E D + + +TGI+ Sbjct: 131 YVVIDIETDGLDENENSIIEIGAVKIDPS--QLEEFNYL---VKYDKILPKQISKLTGIS 185 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + RDG + F + + I FD + Sbjct: 186 QELLDRDGKDLQVVLQEFLNFIGNHD---LVGYGINFDIKFINKKLKELNQPLL------ 236 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N +DL+ + F + +KLQ + A IE H A D Sbjct: 237 KNRVYDLMQYAKKEKLFLDN-------------YKLQTVLKAYEIEDEVPHRALHDSKLI 283 Query: 185 LALVWLIREK 194 L + + Sbjct: 284 YDLSTKMNKF 293 >gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus casei BL23] gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus casei BL23] gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W] gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II] Length = 180 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 28/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET + A V V + + ++S D + + I GIT Sbjct: 3 FIAMDFET--ANRKRASACSLALVVVQQN-KVVDSFYTL---INPQMQFDAQNIHIHGIT 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ I F I+ +N FD R R Sbjct: 57 PEMVQDQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVMRLTLDRYGI--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ ++D ++ F P + +L ++ A I + H+A AD YA Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNALADSYAC 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 ++ E + +K Sbjct: 155 ARILIAENEHFGEARIKSMMKLSKA 179 >gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem] gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem] Length = 312 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 47/186 (25%), Gaps = 32/186 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITG 62 + D ET G D D+ + V D + +I + + E ITG Sbjct: 55 LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGFPIPEEVKEITG 114 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ F + + +I +N + Sbjct: 115 ISDDMVRGQ-----AFDDAFINLLAEKSHMVIAHNAAFDRKFVEARFPAFTKLPW----- 164 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + Q + +S L+ L +NAH A D Sbjct: 165 -------------------ACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAE 205 Query: 183 ATLALV 188 L L+ Sbjct: 206 GVLGLL 211 >gi|161869352|ref|YP_001598519.1| oligoribonuclease [Neisseria meningitidis 053442] gi|161594905|gb|ABX72565.1| oligoribonuclease [Neisseria meningitidis 053442] gi|325135642|gb|EGC58259.1| oligoribonuclease [Neisseria meningitidis M0579] Length = 187 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S T + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|71414299|ref|XP_809256.1| exonuclease [Trypanosoma cruzi strain CL Brener] gi|70873611|gb|EAN87405.1| exonuclease, putative [Trypanosoma cruzi] Length = 316 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFIT 61 + D ET G D V + ++ FF +A + Sbjct: 97 ICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 156 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 G++ + ++E + F + Sbjct: 157 GLSFEMLRDAPLLE-DVISDFAAFLIQLDG 185 >gi|311697102|gb|ADP99974.1| YacC protein [marine bacterium HP15] Length = 286 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 56/187 (29%), Gaps = 26/187 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + + A D Q + T K DPEA + G+T Sbjct: 109 LFLDTETTGLD-DQAQIIELAI--SDAQGTILLET-----KLRPSVSIDPEAEDVHGLTI 160 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E S ++ + ++ +N + + Sbjct: 161 EFLANAP-TWPEVSDQVRKIL--CGRALVIFNADFDTRMFRQTAAAY------------- 204 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + ++ A + + S L D G AH A AD AT Sbjct: 205 GEPVEWVSELKTHCAMYLAADAFGPTNRH-GSISLADAVDFAGVTWRGAAHGAVADTLAT 263 Query: 185 LALVWLI 191 + LV I Sbjct: 264 VDLVQAI 270 >gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 215 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 64/211 (30%), Gaps = 26/211 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207 A D T L I + +L + Sbjct: 183 ALYDTERTAVLFCEIVNRWKRLGGWPLPLST 213 >gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 215 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAVLFCEIVNR 200 >gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] Length = 209 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 20/191 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +V D ET G + D V + + T + KP+D+ +++ I Sbjct: 28 KNEYVCLDCETTGLNPKKDEILSIGAVIIKENKVLMSKTFNIYVKPSDN--ISTQSILIH 85 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P E I++ + +I I+FD + S Sbjct: 86 RIRPIDLENAIDPE----EAIYELLKFIGSRVIVGYYIKFDIAIISRYTKKYIGIKLPNS 141 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +S + R+ Y F K + I + HDA D Sbjct: 142 SIEVSSMYYRTKKRRSDYEF--------------VDLKFDTIMKELDIPLLGKHDALNDA 187 Query: 182 YATLALVWLIR 192 T + ++ Sbjct: 188 IMTSMIFLKLK 198 >gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 242 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 46/169 (27%), Gaps = 17/169 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V + V EA + G+T + Sbjct: 12 FDTETTGVDVEGDRIVSAAVVVQEAAG---ARPRVRRWLVDPGVPVPAEATAVHGLTEEH 68 Query: 68 ALRDGVVEAEFSRRI---HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+G A R + Q+ + ++ N FD R+ S Sbjct: 69 LRRNGRWPAPVMREMADELQYLAAAGRPLVVMNAP-FDLTLLDRELRRHRASSLDR---- 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 L + P + L DL G+ Sbjct: 124 ------WLAASAPLRVLDPRVLDRHLDRYRKGRRTLTDLCAHYGVTLEG 166 >gi|13242597|ref|NP_077611.1| EsV-1-126 [Ectocarpus siliculosus virus 1] gi|13177400|gb|AAK14544.1|AF204951_126 EsV-1-126 [Ectocarpus siliculosus virus 1] Length = 206 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 65/217 (29%), Gaps = 27/217 (12%) Query: 1 MTNHFVIYDYETFGRDVAL-----------DRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M + +D ET G R A V D + + V AD Sbjct: 1 MPE--LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWVLRDEKTVYSQRYSVTDPGIAD 58 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 + + A F+ GI+ + R G + I +N+ FD Sbjct: 59 ENI---GAEFVHGISREVMDRYGNATKVVLSDFMADVDRSDK--IVAHNLDFDRSVVSAE 113 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NG 168 +R + ++R + + + ++ P+ KL++L G Sbjct: 114 LFRMG--------SSDDARRLMSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFLFG 165 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 NAH A DV A + + + EK Sbjct: 166 HVFENAHHAMCDVDAMVKCYFTLLEKHTSSKNKNEKT 202 >gi|296314314|ref|ZP_06864255.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768] gi|296838975|gb|EFH22913.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768] Length = 187 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S T + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] Length = 180 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 28/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET + A V V + ++S DP+ + I GIT Sbjct: 3 FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P I F I+ +N FD R R Sbjct: 57 PDMVQDQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGI--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ ++D ++ F P + +L ++ A I + H+A AD YA Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPLEHHHNALADSYAC 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 ++ E + K Sbjct: 155 ARILIAENEHFGEARTKAMMKLAKA 179 >gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] Length = 267 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 53/187 (28%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + + +++ + +I E F + +TGI Sbjct: 76 FCVVDIETTGG-TTNGQIIEIGAIKM-KNGTEIGRFESFVAA----SVVPENITELTGIR 129 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + +F T + +N+ FD + + Sbjct: 130 ASDLVGAPN----LLNVLERFKIFLGTSVFIAHNVNFDYGFISHSLNEIGLGILLN---- 181 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D+ R A + L L GI + + H A D A Sbjct: 182 --RKLCTIDLSRRTIASQ--------------KYGLGSLKELLGINNTH-HRALNDAIAA 224 Query: 185 LALVWLI 191 + + Sbjct: 225 AEIFKVC 231 >gi|54303407|ref|YP_133400.1| putative DNA polymerase III [Photobacterium profundum SS9] gi|46916837|emb|CAG23600.1| putative DNA polymerase III [Photobacterium profundum SS9] Length = 236 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 71/204 (34%), Gaps = 19/204 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET G + D+ V + ++ S+E + + E+ I I Sbjct: 50 NFVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIR--HGEFIKAESAQINEI 107 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP++ + + I I+ + + + + + ++ Sbjct: 108 TPKQLHKG----VDIDTAIDWLLERIQGKIVLAHCANIEKQFIES--------YLKDTYQ 155 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D ++ S G + + TS++L DL + + +H A +D A Sbjct: 156 LNTFPCYFIDTLQLEKHHSYAG-----KSNQHTSYQLDDLRQYHNLPAYYSHSAASDAVA 210 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 L + +K ++ + + Sbjct: 211 CAELFLVQVKKLNLTSDFSLNELS 234 >gi|326791308|ref|YP_004309129.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] gi|326542072|gb|ADZ83931.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] Length = 248 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 31/202 (15%) Query: 4 HFVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 +++++D E D Q V++D + I++ KP Sbjct: 2 NYIVFDLEFNQDFSARKDVVNKENPYTFEIIQIGAVKLDENFHTIDTFN-RLIKPTIYEE 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +P ++TGIT ++ ++ +E + +F + + ++++ Sbjct: 61 MNPFVSYLTGITIEQLAQE-ESFSEVYKAYIEFIGSRKAICCIWGTSDMKILFKNILYHK 119 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + + N +LQD I Sbjct: 120 LDPAPFPRMFINIQPY-----------------TSIYLGLPSKKLLRLQDAVNMLQIPTS 162 Query: 173 NA-HDAKADVYATLALVWLIRE 193 A H A +D Y T + + + Sbjct: 163 TAFHLALSDAYYTAEIFKKVYQ 184 >gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131] gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131] Length = 214 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D+ ++ T F +P + +P A+ TG Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + N R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAERAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D I L ++ GI A Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVSAGIPFDGKQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I K Sbjct: 181 HGALYDTNRTALLFCEIVNK 200 >gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] Length = 239 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 31/201 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58 FV D+ET G D + V + + FC+ A + +PE ++ Sbjct: 48 FVALDFETTGLDSEQNSIISIGLVPFN--------LQRIFCRQAQHWYIEPEDKLKENSI 99 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + R + ++ + R + R+F+D++ Sbjct: 100 IIHGITHTDLKGAP----DLLRILEPVLDALAGKVVVVHYRRIE---------RDFFDNH 146 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQ----WPSRDDGATSFKLQDLALANGIEHVNA 174 S+ N + ++D M+ S +L + + Sbjct: 147 LRSFINEGIVFPVIDTMQIEADVQESQNNSFFSLFKPKKRQESIRLANSRARYNLPAYPP 206 Query: 175 HDAKADVYATLALVWLIREKK 195 HDA D AT L+ Sbjct: 207 HDALTDAIATAELLQAQIHYH 227 >gi|255068356|ref|ZP_05320211.1| oligoribonuclease [Neisseria sicca ATCC 29256] gi|255047405|gb|EET42869.1| oligoribonuclease [Neisseria sicca ATCC 29256] Length = 185 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + D E G D +R + A + D + +EV+ +D+ L D Sbjct: 7 NLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDEWNTATH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYD 116 G T Q+ + EAE +++ F + + N+I D + R Sbjct: 67 GRTGLTQRVRESQLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYMPRLEAY 126 Query: 117 SYRW 120 + Sbjct: 127 FHYR 130 >gi|319639353|ref|ZP_07994104.1| oligoribonuclease [Neisseria mucosa C102] gi|317399537|gb|EFV80207.1| oligoribonuclease [Neisseria mucosa C102] Length = 185 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60 N+ D E G + DR + A + D + ++V+ +D+ L + Sbjct: 6 NNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDSMDEWNTAT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115 G T Q+ + EAE + + F S + N+I D + R Sbjct: 66 HGRTGLTQRVRESTLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|188581967|ref|YP_001925412.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] gi|179345465|gb|ACB80877.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 187 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 59/195 (30%), Gaps = 25/195 (12%) Query: 8 YDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +D ET G D A R Q + S +P + PEA Sbjct: 5 FDVETSGLIIRDRPLDDPAQPRMVQLGFTVHTPDRRVVHSYSALI-RPDGWEI-TPEAQR 62 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G + + R GV + I +N D ++ Sbjct: 63 VHGFSTEDCGRWGVDSKVALLDLVSALKT--ARIAVAHNFANDAAIAQRE----LNILKA 116 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +R + MR A DG +WP+ KL G EH AHDA Sbjct: 117 ADEGFMRARLRRVCTMRTGAALVQDG-KWPTLG---RLHKLLA-----GHEHEGAHDALG 167 Query: 180 DVYATLALVWLIREK 194 D AT W + ++ Sbjct: 168 DAQATARCFWGLVDR 182 >gi|304388401|ref|ZP_07370510.1| oligoribonuclease [Neisseria meningitidis ATCC 13091] gi|304337613|gb|EFM03773.1| oligoribonuclease [Neisseria meningitidis ATCC 13091] Length = 187 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] Length = 238 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58 FV D+ET G D + V D + +C+ A + +PE ++ Sbjct: 48 FVALDFETTGLDSKQNSIISIGLVPFD--------LQRIYCRKAKKWYINPEDNLKENSI 99 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + + ++ + R + + + Sbjct: 100 IIHGITHSDLQGAP----DLLSILEPLLKELAGKVVVVHYRRIERDFFDLDLRAQLKEGI 155 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 D + + + G + + S +L + + + + HDA Sbjct: 156 I------FPVIDTMQIEADVQNKYSKGFINWLKGHQSESIRLANSRVRYNLPAYSPHDAL 209 Query: 179 ADVYATLALVWLIREKK 195 D AT L+ + Sbjct: 210 TDAIATAELLQAQIKYH 226 >gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 467 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 59/184 (32%), Gaps = 24/184 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63 FV D ET + Q VR E+ ES +V+ C+P D + I GI Sbjct: 107 FVAVDVET--ANGNWGSICQIGAVRF-VAGEETES-KVWLCQPPAGIDHFDDINISIHGI 162 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE + + F ++ +N +FD R+ F R Sbjct: 163 TADDVKDAP-TFAEAAGELLTFMRD---DVLVAHNAQFDATALRSAFLRTQTP------- 211 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + M + + S+ + KL +A A HDA D A Sbjct: 212 --------VPEMALACSLALARYASKSKVLSVANHKLPTVAKAVSFGDFQHHDALDDARA 263 Query: 184 TLAL 187 + Sbjct: 264 AGHI 267 >gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 239 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 20/189 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D+ET G D D+ V + + +I + L E+ I + P Sbjct: 54 LVLDFETSGLDPEQDKVLSMGWVEIRQS--QIRLSSARHILVNQPVLNGYESARIHHLRP 111 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + GV E ++ I+ + ++ + +R + + W Sbjct: 112 ETLRNCGVSEHHAFSQLFDVMK--GKVIVAHGSVIEKRFLARYLTLHYGQINLPLVW--- 166 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + + W +L + A+G+ AH+A D AT Sbjct: 167 ---LDTLKIEQYREQLRQVCRDW----------RLSSVRAAHGLPDYQAHNALNDAIATA 213 Query: 186 ALVWLIREK 194 L + Sbjct: 214 ELYLAQVHR 222 >gi|77407162|ref|ZP_00784150.1| exonuclease, putative [Streptococcus agalactiae H36B] gi|77174231|gb|EAO77112.1| exonuclease, putative [Streptococcus agalactiae H36B] Length = 124 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 4/71 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ +D ET G + DR + V + ++S E + I Sbjct: 50 KNRFIAFDIETTGLNSQQDRIVEVGAVLF-ENGKVVDSYESL---VNAKVNISADVTRIN 105 Query: 62 GITPQKALRDG 72 IT + Sbjct: 106 NITNRMIKNAP 116 >gi|325204819|gb|ADZ00273.1| oligoribonuclease [Neisseria meningitidis M01-240355] Length = 187 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum ATCC 700975] Length = 223 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 10/103 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET R A VR+D +++ E+ EA I GIT +K Sbjct: 11 FDLETTSVKPKEARIVTSALVRID--GREVDKREMLA---DPGVEIPEEAAKIHGITTEK 65 Query: 68 ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYS 106 A +G E + I+Q + +I YN Sbjct: 66 ARAEGRPHEEVLKETVDSIYQAWDE-GLTLIVYNAAYDLSVLR 107 >gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] Length = 823 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 29/191 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D E + Q V V Q + +++ + + +TGI Sbjct: 9 KYAVVDLEATSAST-TAQIIQVGIVIV-EQGQIVQTYQT---DVNPHEALTQHIIDLTGI 63 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q+ + ++ + I Q CI +N++FD + Y+ Sbjct: 64 TDQQLAQAP-DFSQVAGDIFQLIQD---CIFVAHNVKFDANLLAEQLFLEGYE------- 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R +D + F P + ++L DLA ++ +AH A AD YA Sbjct: 113 ---LRTPRVDTVELSQVFFPTLER----------YRLSDLAKYLDLDLTHAHTAIADAYA 159 Query: 184 TLALVWLIREK 194 T L+ I+EK Sbjct: 160 TAQLLISIQEK 170 >gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299] gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299] Length = 215 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 26/199 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G D R + + + F+ P D EA + GI+ Sbjct: 18 IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRMHGIS 74 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + +F + I +N FD + + + Sbjct: 75 GEFLKDKPLFHT-IADDFLEFIADSKLII---HNAPFDIKFLNHEL--SLLKRAEIKLLE 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182 + D L + R+++ + + L L +++ H A D Sbjct: 129 LANTIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSSRQLHGALKDAA 174 Query: 183 ATLALVWLIREKKPKLFEY 201 + + + F+ Sbjct: 175 LLAEVYVELMGGRQSAFKM 193 >gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15] gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15] Length = 288 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 11/112 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FVI D ET G D+ + + + D + + + EA I Sbjct: 128 KDQFVILDTETTGL-TLRDQIIEISVI--DLAGKIL-----LNSLVKPTIIIPAEATSIH 179 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 GIT + + + + I+ YN N Sbjct: 180 GITNEMIHGA-QSWTTIYQELLEV--TVGKTILIYNAEFDLGMIENTCIANN 228 >gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] Length = 239 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 58/194 (29%), Gaps = 27/194 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR +FAG+ + + + P D EA + G+T Sbjct: 5 IILDTETTGLYAENGDRLVEFAGLEM-VNRQMTGRFLHLYVHPQRDM--PEEAARVHGLT 61 Query: 65 PQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A+ + I +F I +N +FD + F R S Sbjct: 62 IDVLEEKNAPPFAKVGQEISEFIRGAELII---HNAKFDVGFLNMEFRRMGLPSVEE--- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 G D L + R ++ L L I+ H A D Sbjct: 116 LGCEITDTLAMAREMFPGQKA--------------SLDALCNRLSIDRSKRVLHGALIDC 161 Query: 182 YATLALVWLIREKK 195 + + ++ Sbjct: 162 ELLGEVYLAMTRQQ 175 >gi|119383203|ref|YP_914259.1| exonuclease, RNase T and DNA polymerase III [Paracoccus denitrificans PD1222] gi|119372970|gb|ABL68563.1| Exonuclease, RNase T and DNA polymerase III [Paracoccus denitrificans PD1222] Length = 303 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 60/213 (28%), Gaps = 32/213 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 I D ET G D DR + A R VD + IE + P Sbjct: 52 MRIVAIIDTETTGLDPTTDRLVEIAIERLSVDARGRIIEMEHPRSWREDPGRSMPPRLTL 111 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG+T + ++ + +I +N FD + Sbjct: 112 LTGLTDADLAGCAFDDESIVAQLGE------ADVIIAHNAAFDRPF-------------- 151 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D+ A+ Q G L L G H A+ Sbjct: 152 ---------VDVRFPALQHQAWGCSLTQLDWLTLGFDGRALGHLLFQAGWYF-KGHRAEQ 201 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 DV+A L+ + + +L + ++ R Sbjct: 202 DVHALATLLGSVAGDGRTIMSHLLERCDRPNFR 234 >gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1] Length = 215 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPSDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group] gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group] Length = 282 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 57/212 (26%), Gaps = 27/212 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++D ET G R +FA D F + + I Sbjct: 61 TILVFDLETTGYFHKDHRIVEFA--LCDLSG---GKNSTFETLVNPERTVPDYVEHLIKI 115 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117 R G+ ++ + F + +N +FD + F R Sbjct: 116 GTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPL 175 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176 +D L + + + + L+ L GI H +AH Sbjct: 176 PA-----DWLFFDTLLLAK----------KMVKAEGKKRRTSLEALREHYGIVSHDDAHR 220 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 A DV + + E L + K Sbjct: 221 AMRDVMILSQVFQKMTFDLKLTNEELINEAMK 252 >gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM 7109] gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum DSM 7109] Length = 237 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 8/104 (7%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + R A VR+ ++E E+ +A + GIT + Sbjct: 28 FDLETTGTNPLSARIVTSAMVRIR--GSQVEDVELLA---DPGVEIPEQASAVHGITTEY 82 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A G E + ++ +N Sbjct: 83 AREHGKPHDEVLAETIRAIRQGWEEGATLVVFNAPYDLTVLRSQ 126 >gi|313669085|ref|YP_004049369.1| oligoribonuclease [Neisseria lactamica ST-640] gi|313006547|emb|CBN88011.1| putative oligoribonuclease [Neisseria lactamica 020-06] Length = 187 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWIPERATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7] Length = 232 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 66/217 (30%), Gaps = 31/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D +P D +P A+ TG Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 63 ITPQKALRDGVVEAE--FSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P R + E E RRI + CI+ +N FD + R Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173 + + +LD + + L + GIE N Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGIEFDNQ 183 Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 AH A D T L I + L + + Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220 >gi|220918921|ref|YP_002494225.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] gi|219956775|gb|ACL67159.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] Length = 200 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 12/186 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D + V ++ +P P +V + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEHGKAVSPRSVQAHQLVAGD 75 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 AE + + ++ ++ + R G Sbjct: 76 TRGAP-PLAEVLPELERRLR--GAVLLVHHAPIELGFLKRAFRAAGLRWP-------GPP 125 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D + ++ + + + +P L G+ AHDA D AT L Sbjct: 126 VVDTVKLL--LRLDARERRSFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAEL 183 Query: 188 VWLIRE 193 ++RE Sbjct: 184 FLVLRE 189 >gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4] gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4] gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169] gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1] gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1] Length = 232 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 66/217 (30%), Gaps = 31/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D +P D +P A+ TG Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 63 ITPQKALRDGVVEAE--FSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P R + E E RRI + CI+ +N FD + R Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173 + + +LD + + L + G+E N Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGLEFDNQ 183 Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 AH A D T L I + L + + Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220 >gi|164688494|ref|ZP_02212522.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM 16795] gi|164602907|gb|EDQ96372.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM 16795] Length = 252 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 35/229 (15%) Query: 4 HFVIYDYETFGRDVALDR--------------PAQFAGVRVDRQWEKIESTEVFFCKPAD 49 +++I+D E + DR Q +++D + +++ + K Sbjct: 2 NYIIFDLE---FNQGFDRLNNKTVSNAKCPFEIIQIGAIKLDSELNILDTFSS-YIKSEI 57 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 P +TGIT E +F + N+ + + + + Sbjct: 58 YKDIHPFVKKMTGITNSNLKNAP-SFKEVYEDFLKFIGIKNSIFGTWGTNDLKELHRNIL 116 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 FY ++ + N ++ + G +++ Sbjct: 117 FYNLSLENVPTMYIN----------------IQQHASKFFNNPVGKCIGLQNAISILQLE 160 Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + H+A D Y T + I K K Y Y+ K + ++ + I Sbjct: 161 QDKQYHNALNDAYYTALVFQKINNKNIKAETYTYNLSKKEKQKQRLKID 209 >gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49726] gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49726] Length = 233 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET + R A VR+D + + A + GIT Sbjct: 19 LAFDLETTSANPKDARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQAATDVHGITT 73 Query: 66 QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +KA +G E + +I YN Sbjct: 74 EKAQAEGRPHEEVLKDTVDAIKSAWEDGLTLIVYNAAFDLTVL----------------- 116 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + + + Y +W L + G+E NAH+A AD Sbjct: 117 RSLTGDFTVTGPVFDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 171 Query: 183 ATLALVWLIREKKPKLFEYL 202 A + W + + Sbjct: 172 AAARVAWKQVRQHYPNLAQM 191 >gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 231 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 29/223 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V +I + +VF + + I GI+ Sbjct: 8 IVLDTETTGLDTGSGHRIIEIGCV---ELINRIPTGKVFHRYLNPERDIPYHSFKIHGIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ + F S I+ +N FD + + + Sbjct: 65 EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNMELSKLNAGLI-----S 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R +A SP L L I N H A D Sbjct: 116 SDRVLDTLPLARKKFAGSPA--------------SLNALCKRFDISLENRELHGALVDAQ 161 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + + ++ N ++N+TP H Sbjct: 162 LLAKVYVELTGGLQTFLFDNECNQDSNSTFVQHKVRNLTPREH 204 >gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270] Length = 201 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 27/205 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A + + + + + F +P + DP A+ TG Sbjct: 14 VVVDVETAGFDSERNALLEVAAIIIGGEVGQLRPVATHH-FQVQPFAGAVLDPAALAFTG 72 Query: 63 ITPQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P +ALR V E E R I + + I+ +N FD + + R Sbjct: 73 IDPFQALRGAVSEEEALRGIFRPVRTAVKVAQCRRAILVGHNAAFDLSFIKAAEKRTGVK 132 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + N + D + + + + +H AH Sbjct: 133 N------NPFHLFSTFDTVSLAGLAYGETVLAKAALAAGLD-----------WDHTQAHS 175 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A D T L I + EY Sbjct: 176 ALYDARQTAELFCRIVNRYDLNREY 200 >gi|225077243|ref|ZP_03720442.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens NRL30031/H210] gi|224951387|gb|EEG32596.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens NRL30031/H210] Length = 230 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ D E G + DR + A + D + ++V+ +D+ L D Sbjct: 51 NNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTAT 110 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115 G T Q+ + EAE + + F S + N+I D + Sbjct: 111 HGRTGLTQRVRESKLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPHLEA 170 Query: 116 DSYRW 120 + Sbjct: 171 YFHYR 175 >gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii DSM 18315] gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii DSM 18315] Length = 174 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 28/193 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + + + + I+S +P ++ + Sbjct: 1 MERFAAIDFET--ANGKRSSICSIG-IAIIEDNKVIDSIYTL-VRPYPNF-YTRFTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q + E E I + +N FD+ R Sbjct: 56 GITMQDTIDSPDFE-EVWSEIAGKLQD---IPLVAHNSPFDEGCLRAA------------ 99 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D+ Y F + +LQ +A G + H A AD Sbjct: 100 -------HEAYDLAYPKYQFYCTCRLSRRMYPFLVNHQLQTVAAHCGYDLTYHHHAMADA 152 Query: 182 YATLALVWLIREK 194 YA + + + Sbjct: 153 YACAHIAATMMRE 165 >gi|138894977|ref|YP_001125430.1| hypothetical protein GTNG_1315 [Geobacillus thermodenitrificans NG80-2] gi|134266490|gb|ABO66685.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 242 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 59/201 (29%), Gaps = 30/201 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI D ET G D A + + + +TGI Sbjct: 62 FVIIDMETTGFSPQQGDEILAMAAAKT-VNGLVTGTYMTL---VKPEKPIPEHISDLTGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + AE R F S ++GY+ D + R++ +R+ + Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFISA--GVLVGYHIGH-DLSFLRHVLWRH------YRQK 167 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+ ++ + L D GI+ H A DV A Sbjct: 168 WSWRFVDMQPIVSLVRH---------------PCPTLDDALACYGIDCPRRHTADGDVEA 212 Query: 184 TLALVWLIREKKPKLFEYLYD 204 + L ++ + +L Sbjct: 213 MVKLWAILLGELRELGIETLH 233 >gi|313681496|ref|YP_004059234.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154356|gb|ADR33034.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 267 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 30/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F I D E+ G A + + V++ + + I++ E +C + ITGI Sbjct: 65 FCIVDVESNGSKPAHHQIIEIGAVKL-QNGKIIDTYESLVYC-----TDISDQIQEITGI 118 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ L+ S+ + +F I ++ +FD + + R Sbjct: 119 KTEQTLKAPA----MSKVMREFRLFLGDAIFVGHDAKFDYNFVSAMMERVGL------SK 168 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N +D+ + + +K H A +D Sbjct: 169 LLNRSLCTIDLA--ERTIESERYGLAYLNTALELYKEAT-----------HHRALSDAMT 215 Query: 184 TLALVWLI 191 T L+ + Sbjct: 216 TTKLLKRV 223 >gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 297 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 27/195 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V+ D ET G D + + V+V+ E E F + + +TG Sbjct: 128 KPYVVIDIETDGLDFDKNLIIEIGAVKVEN-----EKFEEFTRLIKYNKKLNSTIKDLTG 182 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + +G+ E F I+GYN +D + F + Sbjct: 183 IDEKLLNEEGIELKEALSLFKTFIKDYP--ILGYN-TSYDIKFLNKSFLDLGMEPIAN-- 237 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +DL+ ++ ++KLQ A GI H A D Sbjct: 238 ----KVYDLMTFVKKEKILL-------------PNYKLQTALQAYGINKQVPHRALEDSR 280 Query: 183 ATLALVWLIREKKPK 197 T L + + + Sbjct: 281 LTAELSTKVNKFRDM 295 >gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220] gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220] Length = 215 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + R Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLSLGQTVLSKACLAAGMEFDGNQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAVLFCEIVNR 200 >gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2] gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2] Length = 215 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + R Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLSLGQTVLSKACLAAGMEFDGNQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAVLFCEIVNR 200 >gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] Length = 239 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 46/193 (23%), Gaps = 26/193 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G R + + + F D D EA+ + GIT Sbjct: 4 IALDTETTGLSVKDGHRIIEIGCIEI-LNRRVTNKYYHQF--LQPDRKSDTEALAVHGIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E F I +N FD + D Sbjct: 61 HEFLKDKPR-FREIVNDFMNFIKGAELLI---HNAAFDMSFINRELELLHQDWQPLE--- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 Y D + L L G+++ N H A D Sbjct: 114 -------------HYCKITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAE 160 Query: 183 ATLALVWLIREKK 195 + + ++ Sbjct: 161 ILAEVYLTMTAEQ 173 >gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum] Length = 292 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 18/128 (14%) Query: 3 NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKP-----------A 48 FV +D ET G R +F V V I CK Sbjct: 5 KTFVFFDLETTGLPKFEENRTRITEFCAVAVRADH--IGLQTAQKCKLPRVQSKLSLCFN 62 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYS 106 P+A +TG++ + ++ I + + C++ +N FD Sbjct: 63 PARAICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPIL 122 Query: 107 RNIFYRNF 114 R Sbjct: 123 RAEIENTG 130 >gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] Length = 283 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 70/250 (28%), Gaps = 32/250 (12%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V D ET G D+ Q + ++ + +++ + D + A + Sbjct: 14 SYVSVDTETTGLYPMYGDKIIQLSAIKYIDD-KLVDTFDTL---INPDGSNN-NAKSVNN 68 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ E F +N+ FD + ++ + Sbjct: 69 ISESSLKNQP-TFDEVIGDFVNFVED---LPWVGHNLSFDFSFLKSEELKIA-------- 116 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L + R+IY G KLQ LA I++ N H++ D Sbjct: 117 SFKKNSVDTLQIARSIY--------------GNKGNKLQQLAKKFNIDYKNLHNSLYDAQ 162 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242 +L +R + ++ + + + +I Sbjct: 163 IAASLYQHLRSVFQTNKCKKINKKDIDVTNNSLSGAHFAFTGSFKEFPDRKEITKLIIKN 222 Query: 243 VAWHPRYKDS 252 + P Sbjct: 223 GGYVPNGHRC 232 >gi|197336459|ref|YP_002157302.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] gi|197317949|gb|ACH67396.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] Length = 238 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D + V + ++ +F K D + +V I GIT Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSL--EENSVVIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + Q ++ + R + R+F+D+ S Sbjct: 106 HSDLQGAP----DLRRILEQVLDALAGKVVVVHYRRIE---------RDFFDTNLRSLIG 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ---WPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++D M+ + + + + S +L + L G+ H A D Sbjct: 153 EGIVFPVVDTMQIEGDYQQEQAKGLINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDA 212 Query: 182 YATLALVWLIREKK 195 AT L Sbjct: 213 IATAELFQAQVRYH 226 >gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] Length = 252 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 30/207 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V++D ET G + DR Q + VD + +E + D EA+ + Sbjct: 1 MPKYVLFDTETTG-NQEEDRIIQLGAMIVDAK-APVEVYDELCFS---DVEIKLEAMEVH 55 Query: 62 GITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 ITP + + +F +++ ++ + + +NI FD + + Sbjct: 56 NITPDMIIGKPEATQTKFYQKLQEY--NNPSNYLIAHNINFDLGMIKKEGF--------- 104 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-----GIEHVNAH 175 S++ +LD +R P+ P + L + AH Sbjct: 105 -----ESQYQILDTLRCAQHLFPEL---PYHRLQYLRYALDIYMDEEEEAAKHNITIKAH 156 Query: 176 DAKADVYATLALVWLIREKKPKLFEYL 202 DA DV + + K + Sbjct: 157 DAIGDVLVMKLFLSQLVAKCRTAYPDF 183 >gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] Length = 244 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 49/207 (23%), Gaps = 36/207 (17%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + + + F EA + GI Sbjct: 4 IVLDTETTGFDPEQGDRIVEIGALEL-YNHMPTGR--TFHHYINPGRGMPQEAFEVHGIG 60 Query: 65 PQKALRDGVVE----------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P L F + F + +N FD + Sbjct: 61 PD-LLDAPRPPRPGEITLRDKPPFDHVANAFIEFVGNAKLVIHNAAFDMKFLNAELGWLK 119 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 W D L + R + SP L L I++ Sbjct: 120 LPLLPWEQA-----IDTLAIARQKFPGSPA--------------SLDALCRRFAIDNTAR 160 Query: 175 --HDAKADVYATLALVWLIREKKPKLF 199 H A D + + + F Sbjct: 161 TLHGALLDSEILAEVYLELIGGRQPDF 187 >gi|83745794|ref|ZP_00942851.1| Oligoribonuclease [Ralstonia solanacearum UW551] gi|83727484|gb|EAP74605.1| Oligoribonuclease [Ralstonia solanacearum UW551] Length = 289 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 N+ V D E G DR + A V D + + V +D+ L +A Sbjct: 98 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWNKGT 157 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K EA+ + F + + N+I D + + Sbjct: 158 HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 217 Query: 116 DSYRW 120 + Sbjct: 218 YFHYR 222 >gi|309379479|emb|CBX21845.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 187 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] Length = 253 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G + + + V++ + ++I+ + + +TGI Sbjct: 72 FCIVDIESTGG-IKNGQILEIGAVKI-KNLQEIDRFSSL-VQVKE---IPENITELTGIN 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ ++ F I +N+RFD + + Sbjct: 126 LDMVKDAPS----LTKVLNDFRLFLKDSIFVAHNVRFDYGFISKALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL L GI++ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPRYKLDVLKELLGIKNAH-HRALNDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKHC 227 >gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3] gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3] Length = 204 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 66/205 (32%), Gaps = 26/205 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEV-FFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + +D Q + + F +P + DP+A+ TG Sbjct: 15 VIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFTG 74 Query: 63 ITPQKALRDGVVEAEFSRRI------HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR + E E I HQ + N I+ +N FD + R + Sbjct: 75 IDPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNFK 134 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + +M + Q + AH Sbjct: 135 RIPFHPFVCFDTASMAGLMLGQTVLAKACEQ-----------------ANIDYNNEEAHS 177 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A D T L + + K L + Sbjct: 178 ALYDTQVTADLFFYMVNKLKALGGW 202 >gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205] gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205] Length = 448 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 223 LILDTETTGFYYQDNDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 278 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + AE + + +F I +N FD + F R Sbjct: 279 DEFLADKPK-YAEIADVLFEFLKGAE---IIAHNATFDMNFLDMEFKRAGLP 326 >gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1] gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8] gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1] gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E] Length = 232 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 66/217 (30%), Gaps = 31/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D +P D +P A+ TG Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 63 ITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P R + E E RRI + CI+ +N FD + R Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173 + + +LD + + L + G+E N Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGLEFDNQ 183 Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 AH A D T L I + L + + Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220 >gi|121634222|ref|YP_974467.1| oligoribonuclease [Neisseria meningitidis FAM18] gi|166216273|sp|A1KS35|ORN_NEIMF RecName: Full=Oligoribonuclease gi|120865928|emb|CAM09665.1| putative oligoribonuclease [Neisseria meningitidis FAM18] gi|261393203|emb|CAX50822.1| oligoribonuclease [Neisseria meningitidis 8013] gi|325131506|gb|EGC54213.1| oligoribonuclease [Neisseria meningitidis M6190] gi|325137552|gb|EGC60134.1| oligoribonuclease [Neisseria meningitidis ES14902] gi|325141599|gb|EGC64064.1| oligoribonuclease [Neisseria meningitidis 961-5945] gi|325197638|gb|ADY93094.1| oligoribonuclease [Neisseria meningitidis G2136] Length = 187 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 216 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 26/214 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + + I+ +N FD ++ R Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T + + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIEFDGTQAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A D T L I + +L + + + Sbjct: 183 ALYDTERTAELFCEIVNRWKRLGGWPLAMGDSEE 216 >gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259] gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259] Length = 233 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 23/188 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D DR V V R ++ + D + + + I GI Sbjct: 43 VVVDVETSGLDPRRDRLIAIGAVAVSRGKVQLG--DSLEIVLQQDTVSEKGNILIHGI-G 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A R GV A+ + F + ++ FD R + +W + Sbjct: 100 GTAQRAGVPPADA---LLAFLEYLGKDPLVAFHVAFDAPMIRRAMKAFLGLDFSHAWADL 156 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L L D I + H+A AD +T Sbjct: 157 AYVAPAL-----------------YPRLARRRRSLDDWMSEFKIGNYARHNALADALSTA 199 Query: 186 ALVWLIRE 193 L+ +R+ Sbjct: 200 QLLLALRK 207 >gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1] gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72] Length = 232 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 66/217 (30%), Gaps = 31/217 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D +P D +P A+ TG Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 63 ITPQKALRDGVVEAE--FSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P R + E E RRI + CI+ +N FD + R Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173 + + +LD + + L + G+E N Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGLEFDNQ 183 Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 AH A D T L I + L + + Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220 >gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] Length = 302 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 61/186 (32%), Gaps = 27/186 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G D + A VD + KP PEA I GIT Sbjct: 133 VYMDTETTGLYGGCGDELLELA--LVDDAGNVL---LDSLVKPDRHTE-WPEAQAIHGIT 186 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + +E+ R+ T ++ YN F + Sbjct: 187 PADVMNAPSLES-LLPRLLAVIEDAGT-LVIYNAGFDLA----------FLPDAVRPVAS 234 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYA 183 + + A++AFS +W R KL A A G +AH A+AD A Sbjct: 235 NKA-------LCAMHAFSLHAGEWDERRQSYRWHKLGVAACAAGHRWEGSAHRARADALA 287 Query: 184 TLALVW 189 T ++ Sbjct: 288 TRSVWH 293 >gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1] Length = 215 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R + E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAISEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7] gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7] Length = 216 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D Q A V R+D + + T F +P + DP+++ + G Sbjct: 20 VVVDVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDPKSLEVNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR E + + + + I+ +N FD + R Sbjct: 80 INPWHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNAGFDLSFIHQGAERAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + LD + + + A + AH Sbjct: 140 ------RNPFHPFSSLDTVTLSAMAFGQTVLARAVQ-----------AAGMEWSNSEAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 AVYDAEKTADLFCHVINR 200 >gi|167626987|ref|YP_001677487.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596988|gb|ABZ86986.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 178 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 9/163 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVF 59 T++ V D E G DV R + A + D+ I E +D+ L + Sbjct: 4 TDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEILNSMNEWCIK 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 + G T Q+ + ++I F + N+I D + Y Sbjct: 64 VHGETGLTQRVKDSKTSLKQAEQKILVFIKEYVPYQSSPLCGNSIWQDRRFL--AKYMPD 121 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 122 IDDYCHYRMLDVTSLKLLNEYWGDGESFYKKSTHKALDDIRES 164 >gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638] gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638] Length = 224 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q ++T F P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I++ N I+ +N FD + R Sbjct: 80 IDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAASERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T + + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIDFDGNQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAELFCEIVNR 200 >gi|328951319|ref|YP_004368654.1| Exonuclease RNase T and DNA polymerase III [Marinithermus hydrothermalis DSM 14884] gi|328451643|gb|AEB12544.1| Exonuclease RNase T and DNA polymerase III [Marinithermus hydrothermalis DSM 14884] Length = 185 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 14/188 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + D+ V V + +P + + I Sbjct: 6 YWALDVETSGLNPRRDQILAVGMVPVRGGAVRCREAFYSLVRPPSPAVVPLWGLKAHHIR 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + AE R + + ++ ++ D + R + + + Sbjct: 66 PVELRGAP-PLAEVLREVDRRLR--GGALLVHHA-AVDVAFLRRAYRALGWPWPAPRVVD 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + L RA+ L G+ H A D AT Sbjct: 122 TARLLERLARRRAL----------LEPYRAPPPLDLAGARAYLGLPPYPQHHALVDALAT 171 Query: 185 LALVWLIR 192 L ++ Sbjct: 172 AELFLALQ 179 >gi|229821534|ref|YP_002883060.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae DSM 12333] gi|229567447|gb|ACQ81298.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae DSM 12333] Length = 283 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 16/192 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DVA DR A + V + + + A I G+T + Sbjct: 15 FDTETTGVDVAHDRIVT-AALVVRHGLQGL--PQERTWIIDPGVEIPEAASAIHGVTTEH 71 Query: 68 ALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A R G A ++ + + N +D + R+ + Sbjct: 72 ARRLGRPPAEALEEIAAALAAAIADGAAVVAFNASYDLTILEHELVRHHLPTL------- 124 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + R R P + KL DLA G+ H A DV ATL Sbjct: 125 HERLGR----RPDAVLDPLVLDRALDRFRPGKRKLVDLAALYGVSTGELHAADVDVTATL 180 Query: 186 ALVWLIREKKPK 197 ++ + + P+ Sbjct: 181 DVLRALVGRFPE 192 >gi|37681316|ref|NP_935925.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|37200067|dbj|BAC95896.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] Length = 213 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 48/195 (24%), Gaps = 20/195 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V D ET D A ++ F + D +V I Sbjct: 30 KEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHK 87 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q + G+ E E ++ F N ++GY+ + Sbjct: 88 IRHQDLVD-GLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 144 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L+ + L + + + HDA D Sbjct: 145 EVSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPIQDKHDALQDAI 189 Query: 183 ATLALVWLIREKKPK 197 A + + Sbjct: 190 AAALVFVRLTRGDLP 204 >gi|260102659|ref|ZP_05752896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083529|gb|EEW67649.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 249 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D ET G D+ D+ V+ + + E F+ DY IT + Sbjct: 126 SIVALDIETTGLDITKDQIISIGAVKYISKSKC----ERFYRLIKTDYEIPTHISKITQL 181 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 T +K + G+ + + +F + + I+GYN ++ +R+ N Sbjct: 182 TSEKLNQSGIELFDALEDLKKFLA--DRLIVGYNLNFDINFLNRDYQKYN 229 >gi|85713183|ref|ZP_01044214.1| 3'-5' exonuclease [Idiomarina baltica OS145] gi|85693007|gb|EAQ30974.1| 3'-5' exonuclease [Idiomarina baltica OS145] Length = 217 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 55/210 (26%), Gaps = 22/210 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYLPDPEAVFI 60 + ++ D ET G D D+ A V + I F P D P I Sbjct: 27 HTYIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDLQQSPT---I 83 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+T + G + + + C++ ++ D + D+ Sbjct: 84 HGLTKAQLSSGG----DVKKVLKDLEDKLYGCVMVCHHRSLD--------WSYLRDNRLT 131 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + S D +S L +G+ +H A D Sbjct: 132 ENLHFEPLGVFDTLSFEKNKMSFD----NEFQLHNSSLTLAACRTRHGLPIYTSHHAMDD 187 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A L K + K Sbjct: 188 AIACAELFLAQATKIKP-HNEKLRFLLKQS 216 >gi|260583570|ref|ZP_05851318.1| DnaQ family exonuclease/DinG family helicase [Granulicatella elegans ATCC 700633] gi|260158196|gb|EEW93264.1| DnaQ family exonuclease/DinG family helicase [Granulicatella elegans ATCC 700633] Length = 873 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 32/210 (15%) Query: 1 MTNHFVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + + D ET G R QF + Q E + +++ + E Sbjct: 1 MKTSYAVVDLETTG--PKFEEGGRIFQFGCSII-EQGEIVTQVDLY---INPETTIPYEI 54 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TG+ ++ + E + I Q + +N + + +F + Sbjct: 55 QQLTGVDKKEVKQAPY-FDEVASTIFQLLE--GKTFVAHNIS-----FDYSYLVESFREL 106 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 W D + + + Y S++LQDL I H H A Sbjct: 107 AGIEWSAPC--VDTVQLAQICY-------------PTIESYRLQDLTQLLEIPHQQIHSA 151 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRN 207 +D YAT L E+ +L + Sbjct: 152 GSDAYATAQLFLNCLEELEQLPAPTLYQMS 181 >gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] Length = 817 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 33/195 (16%) Query: 2 TNHFVIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + I D E G + + Q V + +S E D Sbjct: 5 KRKYAIVDLEATSAGSNA---KIIQVGIVII-EDGRITQSYET---DVNPHERLDEHIKQ 57 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG+T + + EF++ + F + + +N++FD + ++ Sbjct: 58 LTGLTDARLRKAP----EFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFE--- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R D +++ + Y + L LA IE +AH A A Sbjct: 111 ----LTTPRIDTVELSQIFYPTLE-------------RYNLGALAAELEIELHHAHSALA 153 Query: 180 DVYATLALVWLIREK 194 D AT L+ +REK Sbjct: 154 DAMATAQLLLKLREK 168 >gi|257483040|ref|ZP_05637081.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624800|ref|ZP_06457754.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650623|ref|ZP_06481966.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] gi|298489203|ref|ZP_07007222.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156285|gb|EFH97386.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871170|gb|EGH05879.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330891299|gb|EGH23960.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] gi|331011724|gb|EGH91780.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 237 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 58/194 (29%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G ++ D+ V ++ + E + P AV I G+ Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P A+ G AE +F I+G++ FD + + R + + Sbjct: 101 PS-AIAAGSEPAEALLDFMEFVGESP--ILGFHAP-FDQHMLSRALKESLDYRLRHPFFD 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L L D G+ H+A AD T Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199 Query: 185 LALVWLIREKKPKL 198 L ++ + Sbjct: 200 AELALILFSHARRQ 213 >gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] Length = 268 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 59/187 (31%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D ET G ++ + + ++ ++++ E F P + +TGI Sbjct: 73 FCFVDIETNGG-LSNGQIIEIGAIKTRGT-QELDRFESFVYAP----VVPENITELTGIC 126 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A R F + +N++FD + + + Sbjct: 127 ADDLVGAP-PLASVLERFRLFL---GDSVFVAHNVKFDYGFIDASLQKCGFGMLLN---- 178 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +++ R R A + L L G+++V+ H A +D + Sbjct: 179 --RRLCTVELAR--------------RTIEAQRYGLGSLKELLGVQNVH-HRALSDAVSC 221 Query: 185 LALVWLI 191 + Sbjct: 222 FEIFKFA 228 >gi|153834926|ref|ZP_01987593.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] gi|156972536|ref|YP_001443443.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|148868652|gb|EDL67736.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] gi|156524130|gb|ABU69216.1| hypothetical protein VIBHAR_00168 [Vibrio harveyi ATCC BAA-1116] Length = 210 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET D A ++ F + D +V I I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHHIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E E ++ F N ++GY+ + + Sbjct: 88 HQDLVD-GISEKEALIKLLDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQVYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAKSA 189 Query: 185 LALVWLIREKKPKL 198 + + + Sbjct: 190 ALVYVRLTKGDLPN 203 >gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] Length = 226 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++++ + + T F +P + PEA+ G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 192 HSALYDTMQTAKLFCELVNR 211 >gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 1434 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 61/195 (31%), Gaps = 26/195 (13%) Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I D ET G ++ + R QF+ D + I + F KP +P Sbjct: 2 YLIVDTETTGLPISYNFSITHTDNWPRIVQFSWQNHDILGDLI-EFKNFIIKPDHYDIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A I GIT +KA + GV + + + +N+ FD F R Sbjct: 61 -NAFKIHGITNEKAEKYGVDLSFVLCEFRKSLEKSQC--LIGHNLEFDKKVIECEFLRKK 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVN 173 + + S + P L +L + N Sbjct: 118 IEISFKKKK-----------ILDTKEISVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPN 166 Query: 174 AHDAKADVYATLALV 188 HDA DV AT Sbjct: 167 LHDAANDVKATARCF 181 >gi|27364640|ref|NP_760168.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|320155034|ref|YP_004187413.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27360785|gb|AAO09695.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6] gi|319930346|gb|ADV85210.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 211 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 48/195 (24%), Gaps = 20/195 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V D ET D A ++ F + D +V I Sbjct: 28 KEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHK 85 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q + G+ E E ++ F N ++GY+ + Sbjct: 86 IRHQDLVD-GLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 142 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L+ + L + + + HDA D Sbjct: 143 EVSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPIQDKHDALQDAI 187 Query: 183 ATLALVWLIREKKPK 197 A + + Sbjct: 188 AAALVFVRLTRGDLP 202 >gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] Length = 905 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY------LPDPE 56 V++D ET G +V D Q A VR+ + S V F + + + +P Sbjct: 520 EDIVVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIPRKLGNIDNPL 579 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I +E + ++ N+ ++G+N Sbjct: 580 IEEIQH-------HQLYSPSEGLKMFLEYV--GNSRLLGHNAD----------------Y 614 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 Y N + + + + +KL+ L +E N+H Sbjct: 615 DYHILNFNLQRYLPDIQLEERCNMYFDSLKLIRLLEPNLKEYKLKYLLSVLHLEGQNSHL 674 Query: 177 AKADVYATLALVWLIREKKP 196 A ADV+AT ++V EK Sbjct: 675 ADADVHATCSVVRHCYEKAK 694 >gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] Length = 180 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 28/205 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET + A V V + ++S DP+ + I GIT Sbjct: 3 FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P I F I+ +N FD R R Sbjct: 57 PDMVQDQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGI--------- 104 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R+ ++D ++ F P + +L ++ A I + H+A AD YA Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPLEHHHNALADSYAC 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 ++ E + K Sbjct: 155 ARILIAENEHFGEAQTKAMMKLAKA 179 >gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301] gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301] Length = 235 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 64/236 (27%), Gaps = 37/236 (15%) Query: 6 VIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 + D ET G R + A V E I F D D A + Sbjct: 4 IFLDTETTGLYHAQGHRVIEVAAV------EVINRRLTKQHFHYYLNPDREIDQGAQEVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + A+ + + F + + +N FD + F Sbjct: 58 GISLEFLQDKPH-FADIANELIAFIADSE---LIMHNAPFDVGFLNREFGLIEQKP---- 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179 + AI A D ++ L L GI++ H A Sbjct: 110 -------------VEAITAKITDTLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALL 156 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 D + + + L +K Q + IQ + V V A S Sbjct: 157 DAELLADVYMAMTRGQDS----LMMELDKPQQKNSDAIQEIKQPVLVKLANQAEIS 208 >gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] Length = 186 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 28/191 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + DR + A V V + + ++ ++ + I GI Sbjct: 7 YCVMDTETTGLNPYFGDRIIEIAIVPVYKN-KIVKKW-IYHSLVNPNIRIPALTEKIHGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + +E + + T + +N + + Sbjct: 65 SNDAITDAPSLEN-IISNVRAY--AKGTIFVMHNAYVDLSFIDIATKEIGEFPINFR--- 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L++ + +Y L+ L I H A D Sbjct: 119 ----YIDTLEISQVLY---------------NKKRSLESLVKEFKIADKVPHRALEDAIL 159 Query: 184 TLALVWLIREK 194 T + + EK Sbjct: 160 TAKVFLKLYEK 170 >gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)] Length = 577 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 10/120 (8%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G D DR + + V+R++ + E + D E + + GI Sbjct: 308 LIMDTETTGLDALKGDRVIEVGIIELVNRKF----TGEKLHVYINPERGMDDEVIRVHGI 363 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E ++ +++F + +N FD + F R + Sbjct: 364 TEAFLADKPK-FKEVAKPLYEFMLGAE---LIAHNAPFDMSFLSMEFDRVGLSDFAEKVT 419 >gi|284037590|ref|YP_003387520.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] gi|283816883|gb|ADB38721.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] Length = 205 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 53/201 (26%), Gaps = 11/201 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F++ D E G + + Q V D W + P + + I ++ Sbjct: 3 FLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLT-NVYPENKDAFSSSSEKIHNLS 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCII-------GYNNIRFDDYYSRNIFYRNFYDS 117 + ++ + + ++ + I NF Sbjct: 62 LAELEDAPMI-YDVLPEMEEWICTQLGLRVPKGQLDRTPYLRDLIICGQSVINDINFLKE 120 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HD 176 +L + + F+ ++ + L +A G + H+ Sbjct: 121 AYRYEKQKWPYSRVLLDLHTLAYFTFRVLK-ANGRKVPDRLSLTAIASYFGFAREDGFHN 179 Query: 177 AKADVYATLALVWLIREKKPK 197 A D T + + + + Sbjct: 180 ALEDAVLTAKCLKEVFKLSEQ 200 >gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] Length = 244 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 27/199 (13%) Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +I D ET G DR +FAG+ + + + + P D EA Sbjct: 1 MIKRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYIHPERDM--PEEAAR 57 Query: 60 ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T + A R+I F I +N +FD + F R + Sbjct: 58 VHGLTIEVLEGKNAPPFARVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 G + D L + R ++ L L ++ H Sbjct: 115 EE---LGCTITDTLSMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157 Query: 177 AKADVYATLALVWLIREKK 195 A D + + ++ Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176 >gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 240 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 20/111 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---------------CKPA 48 +V++D ET G A + Q A ++ + IE + F Sbjct: 129 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEFIDPGHPLSAFTTELTGITDD 187 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI 99 + +TGIT + + +F + ++ + Sbjct: 188 PGHPLSAFTTELTGITDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHMQ 234 >gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421] gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421] Length = 190 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 12/195 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N + D ET G + + A + + + + L EA Sbjct: 1 MNT-IWCDTETTGLEPENSGAFEIAFI-FAGKGKVTCERLFKLNPLNETILYHEEAAKTH 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ ++ E E I FF D Y +D Sbjct: 59 GVSEEEIRSFPPAE-EIVPNIANFFQQAIHVF-------GDGEKLTFAGYNCNFDYRHLE 110 Query: 122 WDNGNSRWDLLDVM--RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L D + + KL + + G+ NAH A A Sbjct: 111 ALFNRCGLTLADYFSKQFDALEFVKKATRQKAIPRLENLKLGTVCKSLGVNLENAHTALA 170 Query: 180 DVYATLALVWLIREK 194 D+ AT AL + ++ Sbjct: 171 DIQATRALCIELFKR 185 >gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6] gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6] gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter thermophilus TK-6] Length = 216 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 29/188 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET G D+ D P ++V + I+ ++ F+ P ++ + GI Sbjct: 41 TFVVCDTETTGLDLKKDEPIAIGALKV-KDLC-IDLSQSFYRLIKPQTPPKRSSIEVHGI 98 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP E E S+ +F + ++GY + + +S Sbjct: 99 TPSDLDIAKERE-EVSKEFLEF--SRGSLLVGYFFYIDLVMLKKLLKSFCSVPFVPYS-- 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+LD+ ++ L ++ + + H A D Y Sbjct: 154 -----LDVLDLYKSEKHI-----------------SLDEMLSLFDLPSSSHHSALEDAYM 191 Query: 184 TLALVWLI 191 T + + Sbjct: 192 TALVFLKL 199 >gi|260770659|ref|ZP_05879590.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260614385|gb|EEX39573.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|315178389|gb|ADT85303.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218] Length = 212 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 20/203 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET D A ++ +I +++ F + D +V I I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKII--GNRILTSQPFEVRLRAPQSLDSGSVRIHRIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E + R+ F N ++GY+ + + Sbjct: 88 HQDLVD-GISEQDALTRLIAFI--GNRPLVGYHIRYDKKILDIACRRHLGFPLPNSLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + D L+ + L + + + HDA D Sbjct: 145 SHIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQDKHDALQDAITA 189 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 + + + + F + + Sbjct: 190 ALVYVRLTKGELPAFTSSAHHSS 212 >gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88] Length = 215 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang Length = 235 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 40 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 100 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 160 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 200 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 201 HSALYDTERTAVLFCEIVNR 220 >gi|322382088|ref|ZP_08056018.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153960|gb|EFX46310.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 142 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++I D ET G + A + +D+ +F EA I Sbjct: 54 KSKYLILDTETTGIEYD-SEIVDIAIIDLDKNL-------IFASLVKPICPIPEEATMIH 105 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 GIT + E ++ + S ++ YN Sbjct: 106 GITNEMVADAP-SWLEVWAQVQKLLS--GKTLLIYNADFD 142 >gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1] gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1] gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1] gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1] gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1] gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1] gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1] Length = 215 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69] gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75] gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605] gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206] gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69] gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15] gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75] gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3] gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86] gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605] gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206] Length = 215 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|59713121|ref|YP_205897.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59481222|gb|AAW87009.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 238 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D + V + ++ +F K D + +V I GIT Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSL--EENSVVIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + Q ++ + R + R+F+D+ S Sbjct: 106 HSDLQGAP----DLRRILEQVLDALAGKVVVVHYRRIE---------RDFFDANLRSLIG 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ---WPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++D M+ + + + + S +L + L G+ H A D Sbjct: 153 EGIVFPVVDTMQIEGDYQQEQAKGFINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDA 212 Query: 182 YATLALVWLIREKK 195 AT L Sbjct: 213 IATAELFQAQVRYH 226 >gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110] gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1] gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1] gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1] gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1] gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736] gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736] gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli] gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110] gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1] gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1] gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1] gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1] gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1] gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407] gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1] gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431] gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520] gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482] gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736] Length = 215 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933] gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai] gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301] gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073] gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046] gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197] gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89] gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536] gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1] gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A] gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS] gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638] gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A] gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11] gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22] gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019] gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171] gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1] gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024] gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11] gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1] gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88] gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a] gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989] gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39] gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026] gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972] gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606] gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359] gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9] gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000] gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966] gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412] gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354] gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185] gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088] gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50] gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302] gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1] gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7] gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1] gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1] gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1] gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1] gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1] gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1] gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1] gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1] gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1] gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101] gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W] gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617] gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7] gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70] gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718] gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143] gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271] gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9] gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933] gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073] gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai] gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301] gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T] gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046] gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197] gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89] gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536] gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1] gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS] gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A] gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638] gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A] gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11] gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22] gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019] gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171] gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1] gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli] gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli] gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli] gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli] gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli] gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11] gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989] gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1] gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88] gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39] gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a] gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026] gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82] gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972] gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)] gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606] gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)] gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359] gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017] gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042] gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088] gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412] gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185] gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354] gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034] gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302] gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1] gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1] gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1] gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1] gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1] gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1] gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1] gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1] gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7] gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1] gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1] gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101] gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W] gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972] gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146] gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7] gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617] gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70] gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C] gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W] gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3] gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112] gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905] gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212] gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327] gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B] gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101] gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89] gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687] gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905] gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14] gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G] gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68] gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180] gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357] gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11] gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120] gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252] gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263] gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489] gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863] gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007] gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509] gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2] gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1] gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3] gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167] gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044] gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125] gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v] gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718] gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143] gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271] gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9] gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70] gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71] gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671] gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71] gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218] gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6] gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272] gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304] gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227] Length = 215 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218] Length = 184 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 46/170 (27%), Gaps = 29/170 (17%) Query: 20 DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 DR + V++ + + + + TGIT E E Sbjct: 3 DRAIEIGAVKL-VDGQVAGTFQQLM---NPGFRVSGFIEGYTGITNTMLRTAPRCE-EVM 57 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 F + +N FD + F R +R Sbjct: 58 AEFAHFI---GDTPLVAHNASFDKRFLDAEFDRIG--------------------VRYPG 94 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYATLALV 188 F+ + A + KL DL IE+ H A AD T +L Sbjct: 95 QFACSMLIARRLIQNAPTHKLGDLVRFKQIENDGTFHRALADSQMTASLW 144 >gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] Length = 251 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G + + + V++ + ++I+ + + +TGI Sbjct: 70 FCIVDIESTGG-IKNGQILEIGAVKI-KNLQEIDRFSSL-VQVKE---IPENITELTGIN 123 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ ++ F I +N+RFD + + Sbjct: 124 LDMVKDAPS----LTKVLNDFRLFLKDSIFVAHNVRFDYGFISKALNECGFGILLN---- 175 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL L GI++ + H A D A Sbjct: 176 --RRICTIEFAQCC--------------IESPRYKLDVLKELLGIKNAH-HRALNDALAA 218 Query: 185 LALVWLI 191 + Sbjct: 219 AEIFKHC 225 >gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P+ LR V E + I + + + I+ +N FD ++ R Sbjct: 80 IDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T + + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIEFDGTQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAELFCEIVNR 200 >gi|218767556|ref|YP_002342068.1| oligoribonuclease [Neisseria meningitidis Z2491] gi|11133783|sp|Q9JW09|ORN_NEIMA RecName: Full=Oligoribonuclease gi|121051564|emb|CAM07862.1| putative oligoribonuclease [Neisseria meningitidis Z2491] gi|319409820|emb|CBY90128.1| oligoribonuclease [Neisseria meningitidis WUE 2594] Length = 187 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + DR + A + D + +EV+ +D+ L D Sbjct: 4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTA 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G T Q+ EAE +++ F S + N+I D + + Sbjct: 64 THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPRRATPMCGNSIHQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] Length = 228 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 55/202 (27%), Gaps = 23/202 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST--EVFFCKPADDYLPDPEAVFITG 62 + D ET G D D V VD I+ + C+ D ++ + G Sbjct: 44 LLAVDLETTGLDPRTDHILTVGFVPVD--GLVIDLSGATQLLCRAEGDV---GQSAVVHG 98 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT G+ A+ R+ ++ ++ + ++ + + Sbjct: 99 ITDDALAG-GLPLADVVDRVAAALR--GRVLLAHHAVIEREFLAAACERTHGVPLP---- 151 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + +D M+ D + +L G+ AH A D Sbjct: 152 ------MEAVDTMQLQARVLGSQ---SGADLPPGALRLGTARAHLGLPRYAAHQALTDAL 202 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 A L + Sbjct: 203 ACAELYLAQVARLSGGQPMSLK 224 >gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] Length = 227 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 49/186 (26%), Gaps = 29/186 (15%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + V + T + P D EA + G++ Sbjct: 4 IVLDTETTGIDALNGDRVVEIGCVEL-MNHVATGRTYHQYINPERDMPI--EAFNVHGLS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE F + +N FD + R Sbjct: 61 TEFLSGQP-TFAEIVGPFLDFIQDS---PLVIHNATFDVGFLNAELTRLGMR-------- 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 L RAI ++P L L I++ H A D Sbjct: 109 ------TLPAARAIDTVVLARRRFPGAPA-----SLDALCRRFEIDNSARSYHGALLDAQ 157 Query: 183 ATLALV 188 + Sbjct: 158 LLAEVY 163 >gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47] Length = 355 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 52/177 (29%), Gaps = 29/177 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET D Q A VRV R E ++S + +P + P + I GIT Sbjct: 3 FTAIDFET--ATRRSDSACQLAAVRV-RGGEIVDS-ACWLIRPRPF-VFSPANIQIHGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + E I + +N FD + + + Sbjct: 58 PGMVREEPE-FGELWPEIQSTL---GDDCLIAHNASFDLGVLMACLESHDHPVPDMQYS- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + R + F L+ L+ GI HDA D Sbjct: 113 -----CTRAIARRTW-------------PQQPRFGLKPLSDWLGIRF-RHHDALEDS 150 >gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1] gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1] Length = 355 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 52/177 (29%), Gaps = 29/177 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET D Q A VRV R E ++S + +P + P + I GIT Sbjct: 3 FTAIDFET--ATRRSDSACQLAAVRV-RGGEIVDS-ACWLIRPRPF-VFSPANIQIHGIT 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + E I + +N FD + + + Sbjct: 58 PGMVREEPE-FGELWPEIQSTL---GDDCLIAHNASFDLGVLMACLESHDHPVPDMQYS- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + R + F L+ L+ GI HDA D Sbjct: 113 -----CTRAIARRTW-------------PQQPRFGLKPLSDWLGIRF-RHHDALEDS 150 >gi|27379228|ref|NP_770757.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27352379|dbj|BAC49382.1| blr4117 [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 56/195 (28%), Gaps = 19/195 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FV+ D ET G +V D A +++ +I ++ F D + EA+ I Sbjct: 30 DEFVVIDCETTGLNVRTDNVVAIAAIKIR--GNRILTSARFEAIVHPDSELEAEAIKIHR 87 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + + + F + + FD + Sbjct: 88 LRRSDVEASPI----VWKVLPGFLHFIGPRPLIGYYVDFDIAMLDK-------------Y 130 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +L + + + + + + I + HDA D Sbjct: 131 ILPLVGIELPNERIEVSRLYYERKYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDAL 190 Query: 183 ATLALVWLIREKKPK 197 T + +R+ + Sbjct: 191 MTAMMFLQLRDLSRR 205 >gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 231 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 31/193 (16%) Query: 1 MTNHF--VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M N ++ D ET G D+ R + V +I + +VF + + Sbjct: 1 MENKLREIVLDTETTGLDIESGHRIIEIGCV---ELINRIPTGKVFHKYLNPERDIPYHS 57 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 I GI+ + + FS + +F + I+ +N FD + + Sbjct: 58 FKIHGISEEFLEDKPL----FSDVVFEFLDFISGDILIIHNAEFDIKFLNMELGKLNARL 113 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--H 175 + + D L + R + SP L L I N H Sbjct: 114 I-----SSDRVLDTLPLARKKFVGSPA--------------SLSALCKRFDISLENRELH 154 Query: 176 DAKADVYATLALV 188 A D + Sbjct: 155 GALTDAGLLAKVY 167 >gi|7272366|gb|AAA27192.2| polymerase III epsilon (editing) subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 132 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 12/98 (12%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + + + V V F D L DPEA + Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNN 98 GI + L V F+ + +F + +N Sbjct: 66 HGIADEFLLDKPV----FADVVDEFLDYXXGAELVIHN 99 >gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 221 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 57/202 (28%), Gaps = 22/202 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV+ D ET G DR +++ + +S EVF + + E I G Sbjct: 35 TFVVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQ----DHYNQETAEIHG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I E + F + +I ++ FD + R+ Sbjct: 91 I----LKEGKTTRLEELETLKLFLAYLKNSVIVAHHAGFDVTFINMALERHSLP------ 140 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + + + + L +LA I + H A D Y Sbjct: 141 -------KLKNKILDTSTLYKKTLIRSNLLVKKEHYSLDELAEKFSISVKDRHTALGDAY 193 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T I K + Sbjct: 194 ITAIAFLKILVKLKEKKITTLK 215 >gi|259156611|gb|ACV96554.1| exonuclease, RNase T and DNA polymerase III [Vibrio fluvialis Ind1] Length = 301 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + V+V + +V +TG Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +A + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDEMVQGQHIDDALVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176 + + + + Y G + F L ++AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|225010791|ref|ZP_03701259.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-3C] gi|225004999|gb|EEG42953.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-3C] Length = 204 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 22/188 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFI 60 + F++ D ET G D +R V +++ +S EV+ + + ++ I Sbjct: 16 QSKFIVIDTETTGFDYEKERILCIGAVLLEKSQIAVKDSFEVYLTQ----DHYNSDSTPI 71 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + + F + I ++ FD +R Sbjct: 72 HGI----LKEEKKEKTAEIEALKSFLTYIGNAPIIAHHTMFDVNMINKALHRQGLP---- 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 L + + + + + L +LA I + H A D Sbjct: 124 ---------SLKNKLLDTVVLYKKSLLRSPLIEKKDHYSLDELADKFNISKKDRHTALGD 174 Query: 181 VYATLALV 188 Y T L Sbjct: 175 AYITALLF 182 >gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] Length = 219 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 27/202 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D A R + A V + + F + D A + G+T Sbjct: 4 IFLDTETTGLDPAQGHRIIEIAAV---EMINRQVTNNQFHVYINPEREIDEAAQEVHGLT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E+ S + F + I +N FD + R Sbjct: 61 LEFLSDKPGFES-ISEKFISFIADSELII---HNAPFDIGFLNMELGRIKK--------- 107 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 V+ D + L L G+++ H A D Sbjct: 108 --------GVVEDYAEVITDSLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSL 159 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 + + + L + Sbjct: 160 LLAEVFIGMTRGQEALEIDFNN 181 >gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 295 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 38/138 (27%), Gaps = 13/138 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET GRD R A V D EA I GIT + Sbjct: 75 FDTETTGRDPKSVRIVSAALVTSDGA--------EKAFLIDPGVEIPAEATAIHGITTEY 126 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A G I + T ++ +N +D RN S Sbjct: 127 AREHGTEPRRTLDEIADALAAELRAGTPLVVFNAP-YDLTLLEAELARNGLTPLA-SRAP 184 Query: 125 GNSRWDLLDVMRAIYAFS 142 D L + R + F Sbjct: 185 VAPVIDPLVIDRQMDKFR 202 >gi|221316927|ref|YP_002533071.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1] gi|221243259|gb|ACM15967.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1] Length = 288 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 11/115 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++++I D ET G + + A + D + ++ I Sbjct: 124 KDNYIILDTETTGLGLG-HEIVEIAAI--DLYGNTL-----LNTFVTPTIPIPADSTKIH 175 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 GIT E + + + I+ YN S N Sbjct: 176 GITDDMVKDAPSWEETYMKLL---TISQGKTILIYNAAFDIPKISYTCEVHNIAP 227 >gi|149637346|ref|XP_001510677.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Ornithorhynchus anatinus] Length = 240 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 32/208 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A + A+ + V D ++ C Sbjct: 8 ETFVFLDLEATGLPDASPQIAEISLFAVHRFSLEHPAWDDSGVPLLPRVLDKLT--LCM- 64 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103 + P+A ITG+ + + + + + +F S C++ +N +D Sbjct: 65 NPEQPFTPKAAKITGLNNRSLTDNRKACFDGTVVKALREFLSRQASPICLVAHNGFAYDF 124 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 R R + ++ D L ++ + G + + S++L DL Sbjct: 125 PLLRTELGRLDANLPENTY-----CLDTLPALKGLDKAHDHGTR----SNHGKSYRLGDL 175 Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190 G + AH A+ DVY + + Sbjct: 176 YRQYFGDDPKAAHSAEGDVYTLVMVFLH 203 >gi|237746008|ref|ZP_04576488.1| exonuclease [Oxalobacter formigenes HOxBLS] gi|229377359|gb|EEO27450.1| exonuclease [Oxalobacter formigenes HOxBLS] Length = 305 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 13/109 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPEAVF 59 V D ET G D + VR ++ +++ + P Sbjct: 56 IVFLDTETTGLSSETDVIIELGLVRASFSPSKKKLVSLDAILSAYE--DPGKPLSPFITE 113 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 +TGIT +K + E + + N +I +N FD + Sbjct: 114 LTGITDEKVRGQRIDEKTVAGFLE------NAALIVAHNAAFDRPFFEK 156 >gi|261364839|ref|ZP_05977722.1| oligoribonuclease [Neisseria mucosa ATCC 25996] gi|288566880|gb|EFC88440.1| oligoribonuclease [Neisseria mucosa ATCC 25996] Length = 182 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ D E G D +R + A + D + +EV+ +D+ L D Sbjct: 6 NNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDEWNTAT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115 G T ++ + EAE +++ F + + N+I D + R Sbjct: 66 HGRTGLTRRVRESQLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYMPRLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|297153856|gb|ADI03568.1| hypothetical protein SBI_00447 [Streptomyces bingchenggensis BCW-1] Length = 200 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 59/200 (29%), Gaps = 25/200 (12%) Query: 2 TNHFVIYDYE-TF---------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 + FV++D E T G L Q +R+ + +E E + Sbjct: 1 MSTFVVFDLEFTTWQGALEQDWGAPGQLREIVQIGALRLREDFSVVEEYEALVRPVVNPQ 60 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 L A +TGI + R+G AE F + + N++ Sbjct: 61 LSSYFA-ELTGIDQETVDREGASAAEALGDFLGF-CQGQSVLSYGNDMVVLGENVGWARA 118 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R + NG L++ + +P+ +L + Sbjct: 119 R------GENVKNGFLGAYFLNIRSWLNTVAPETENVNVG-------RLWQVLDLPKPAE 165 Query: 172 VNAHDAKADVYATLALVWLI 191 H A D Y+ A + + Sbjct: 166 GKEHSALFDCYSFAAAIKHL 185 >gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] Length = 228 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 57/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F P + PEA+ G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 192 HSALYDTMQTAKLFCELVNR 211 >gi|167461432|ref|ZP_02326521.1| hypothetical protein Plarl_02538 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 119 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++I D ET G + A + +D+ +F EA I Sbjct: 31 KSKYLILDTETTGIEYD-SEIVDIAIIDLDKNL-------IFASLVKPICPIPEEATMIH 82 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 GIT + E ++ + S ++ YN Sbjct: 83 GITNEMVADAP-SWLEVWAQVQKLLS--GKTLLIYNADFD 119 >gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] Length = 234 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 11/120 (9%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + A + + + + P D EA + G++ Sbjct: 5 IVLDTETTGFDPLTGDRLVEIACLEI-EDFIPTGRHFHAYIDPCRDM--PAEAEKVHGLS 61 Query: 65 PQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI---FYRNFYDSYRW 120 EA E F + I +N FD + R +RW Sbjct: 62 TAFLRGKPKFEAPEIVEAFLDFVAD---APIVAHNAAFDRAFVNYELGLCSRAELPDHRW 118 >gi|259156119|gb|ACV96067.1| exonuclease, RNase T and DNA polymerase III [Providencia alcalifaciens Ban1] Length = 301 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 76/237 (32%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62 V+ D ET G + + V+V ++I S D P PE +TG Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + +A + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDDMVRGQHIDDALVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176 + + + + Y G + F L ++AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7] gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7] Length = 182 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 23/189 (12%) Query: 8 YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D E+ G D ++ + + A V+ + + + + + F + DP+A + GI+ + Sbjct: 6 VDIESTGLDFLSGHKIIEIAMVKYEIETQTM--VDSFVMRFNPRRSIDPKAQAVHGISLE 63 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + ++ S + + I +N FD + R+ + Sbjct: 64 DLAAEPLLADHASS--VASYLSSSDIWIAHNGEAFDIPFIRHELKSYGF---------SL 112 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 L+D + ++ W + D + +L +H AH A D + Sbjct: 113 PDIPLIDTLFSL---------WATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQ 163 Query: 187 LVWLIREKK 195 + R K Sbjct: 164 CFFKARNKY 172 >gi|229366424|gb|ACQ58192.1| Oligoribonuclease, mitochondrial precursor [Anoplopoma fimbria] Length = 266 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 42/160 (26%), Gaps = 14/160 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M+ V D E G D+ D+ + A + D + ++ L Sbjct: 70 MSQRMVWVDLEMTGLDIEKDQIIEMACIITDSNLNILAEGPNLIINQPNELLEGMSEWCK 129 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + Q + + F P C + N++ D + Sbjct: 130 EHHGKSGLTQAVQDSKITLEQAEYEFLSFVRQHTPPGQCPLAGNSVHADKRFLDK----- 184 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153 ++ + D+ + + P+ + Sbjct: 185 --YMPQFMYHLHYRIIDVSTIKELCRRWFPEEYKMVPHKK 222 >gi|294140465|ref|YP_003556443.1| exonuclease [Shewanella violacea DSS12] gi|293326934|dbj|BAJ01665.1| exonuclease [Shewanella violacea DSS12] Length = 232 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 20/181 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D E G D D+ + ++ K++ + + ++ I GI Sbjct: 46 NLMALDLEMTGLDPNHDQILSIGIIPIEAGMLKLDRAQHKLIRVHGSV---GQSATIHGI 102 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E I F + ++ ++ D + ++ R + Sbjct: 103 LDRHLQDA----IEIEDGISWFLAQTRGKVLVAHHAPLDISFLQDAISRVKGEPVTL--- 155 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L V R + S +L + G+ AHDA D A Sbjct: 156 ---LAIDTLAVERRRLLRKQEV-------LQTGSLRLGACRIRYGLPIYGAHDALVDALA 205 Query: 184 T 184 Sbjct: 206 C 206 >gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104] gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1] gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG] gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98] gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109] gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104] gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1] gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG] gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98] gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109] gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043] gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302] Length = 188 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 52/191 (27%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F +D+ET A V+V ++ + I GI Sbjct: 13 NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E ++I F PN ++ +N D Y Sbjct: 67 HESDVANAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L ++ P+ + KL + I N HDA D A Sbjct: 119 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 164 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 165 CAEILLQQEQR 175 >gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37] gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37] Length = 207 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 60/208 (28%), Gaps = 26/208 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + +D Q F P + DP+A+ TG Sbjct: 15 VIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNVLPFEGANLDPKALAFTG 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 75 IDPFNPLRAAVDERDALTEIFKLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERCNLK 134 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + ++ + Q D AH Sbjct: 135 RMPFHPFVSFDTASMAGLILGQTVLAKACQQASIPYDNK-----------------QAHS 177 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A D T L + + K L + Sbjct: 178 ALYDTEVTADLFFYMVNKLKALGGWPLA 205 >gi|302188448|ref|ZP_07265121.1| exonuclease [Pseudomonas syringae pv. syringae 642] Length = 237 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G ++ D+ V ++ + E + P AV I G+ Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P A+ G E +F ++ I+G++ FD + + + + + Sbjct: 101 PS-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFD 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L L D G+ H A AD T Sbjct: 157 AAEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVT 199 Query: 185 LALVWLIREKKPKL 198 L ++ + Sbjct: 200 AELALILFSHARRQ 213 >gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] Length = 241 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 54/217 (24%), Gaps = 40/217 (18%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G + DR + V + + EA + GI Sbjct: 4 IVLDTETTGFEPHEGDRIVEIGAVEL-MGHVPTGR--TYHQYINPQRSMPAEAFGVHGIG 60 Query: 65 PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P +D + ++ F + +N FD + Sbjct: 61 PDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVGDAK---LVIHNAAFDMKFLNAELGW 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 D L + R + SP L L I++ Sbjct: 118 LNRPLLPMDQA-----LDTLAIARRKFPGSPA--------------SLDALCRRFAIDNS 158 Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 + H A D + + + F D R+ Sbjct: 159 SRTLHGALLDSEILAEVYLELIGGRQPDFALAADTRS 195 >gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010] Length = 215 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERVSLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|269962464|ref|ZP_06176813.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3] gi|269832760|gb|EEZ86870.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3] Length = 210 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET D A ++ F + D +V I I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHHIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E E ++ F N ++GY+ + + Sbjct: 88 HQDLVD-GISEKEALIKLLDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAKSA 189 Query: 185 LALVWLIREKKPKL 198 + + + Sbjct: 190 ALVYVRLTKGDLPN 203 >gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 231 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 29/223 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V +I + +VF + + I GI+ Sbjct: 8 IVLDTETTGLDTESGHRIIEIGCV---ELINRIPTGKVFHRYLNPERDIPYHSFKIHGIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ + F S I+ +N FD + + + Sbjct: 65 EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNMELSKLNARLI-----S 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R +A SP L L I N H A D Sbjct: 116 SDRVLDTLPLARKKFAGSPA--------------SLNALCKRFDISLENRELHGALVDAQ 161 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + + ++ N ++N+TP H Sbjct: 162 LLAKVYVELTGGLQTFLFDNECNQDSNSTFVQHKVRNLTPREH 204 >gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B] Length = 237 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDT 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|226939937|ref|YP_002795010.1| DNA polymerase III subunit epsilon [Laribacter hongkongensis HLHK9] gi|226714863|gb|ACO74001.1| Probable DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 202 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 20/191 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET +V VR+ R + S E + ++LP P +V + G+ P Sbjct: 32 LDCETTSLNVREAELLSIGAVRIRR-GRILAS-ESLYLLVRPEHLPAPGSVVVHGLRPSD 89 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 G+ A+ R+ F ++GY ++ + + + Sbjct: 90 LSD-GLAPADAVSRLLDFI--GGRALVGYYLEYDVAVLNKYVKPLTGITLPQRQIEVSGL 146 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 +D + DG +L+++ + + HDA D + Sbjct: 147 YYD---------------WRLKQTPDGYVDLRLEEILKTLDLPRMGRHDALTDAVTAGMI 191 Query: 188 VWLIREKKPKL 198 + +R + Sbjct: 192 LLAMRARGHHD 202 >gi|150005552|ref|YP_001300296.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides vulgatus ATCC 8482] gi|254884534|ref|ZP_05257244.1| exonuclease [Bacteroides sp. 4_3_47FAA] gi|294778642|ref|ZP_06744064.1| exonuclease [Bacteroides vulgatus PC510] gi|319640774|ref|ZP_07995487.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A] gi|149933976|gb|ABR40674.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides vulgatus ATCC 8482] gi|254837327|gb|EET17636.1| exonuclease [Bacteroides sp. 4_3_47FAA] gi|294447591|gb|EFG16169.1| exonuclease [Bacteroides vulgatus PC510] gi|317387586|gb|EFV68452.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A] Length = 162 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 29/190 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++F D+ET + V V R E + P DY I Sbjct: 1 MDNFAAIDFET--ANNERTSICSVGVVIV-RNGEIADRFYSL-VHPEPDYYLY-WNTRIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V +E +++ + +N FD+ + +F D Sbjct: 56 GLTQEDTAHAPV-FSEVWKQVAPKIE---GLPLVAHNKAFDEGCLKAVFRTYCMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D +A G + +L +A G E N H A AD Sbjct: 107 ----YPDYDFYCTYQASRKL-----------KGLRNHQLHTVAGFFGFELENHHHALADA 151 Query: 182 YATLALVWLI 191 A + I Sbjct: 152 EACAWIARQI 161 >gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227] gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012] gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227] gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012] gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83] gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74] gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74] Length = 215 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|307546031|ref|YP_003898510.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307218055|emb|CBV43325.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] Length = 240 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 46/195 (23%), Gaps = 18/195 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D V + + E+V IT Sbjct: 51 VALDMETTGLDARRHAIVSIGVVPFTLGRIALRE--RRYWIVRPQRTLHAESVTFHHITH 108 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + + + ++ + R F D + Sbjct: 109 TDIEQAPE-FGEILGDLLEVLA--GRLVVVH----------YRHIERLFLDDSVKARLGE 155 Query: 126 NSRWDLLDVMRAIYAFSPDGI---QWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + ++D M F S +L D G+ H A D Sbjct: 156 GLMFPMIDTMAVEARFHRQSWLARFKRWIGRPPASIRLYDSRTRYGLPLYQGHHALTDAL 215 Query: 183 ATLALVWLIREKKPK 197 AT L+ + Sbjct: 216 ATAELLQAQIANHYQ 230 >gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri] gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391] gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri] gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis] Length = 302 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 73/237 (30%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + V+V + +V +TG Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +A + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDEMVQGQRIDDALVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176 + + + + Y G + F+L ++AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFQLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|120597914|ref|YP_962488.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|120558007|gb|ABM23934.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] Length = 301 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 75/237 (31%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62 V+ D ET G + + V+V ++I S D P PE +TG Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL------ANGIEHVNAHD 176 + + + + Y G + F + L AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCFAMAWLFHLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] Length = 236 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 61/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + D+ V ++ I+ ++ F +V I G+ P Sbjct: 42 VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFSQQFERTLHRPAQKTNASVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AL G AE + +F ++ ++ ++ + + + R ++ Sbjct: 100 S-ALAAGSDPAEALLELLEFI--GDSPVLAFH-----APFDQRMLARALKETLGHRLQLP 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L M + L D G++ H A AD T Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVDERHHASADAQVTA 198 Query: 186 ALVWLIREKKPKL 198 L ++ + + Sbjct: 199 ELALILFSQARRQ 211 >gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-2] gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-2] gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] Length = 223 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63 +V D ET D A ++ EV C P D +V I I Sbjct: 44 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q G+ E E ++ +F N ++GY+ + + Sbjct: 101 RHQDLHD-GLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 157 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ + L+ + + + HDA D A Sbjct: 158 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 202 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 203 AALVFVRLTKGDLPQF 218 >gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] Length = 527 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 14/118 (11%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 +I D ET G D DR + V E I D E + I Sbjct: 304 LIMDTETTGLDPLKGDRIIEVGIV------EMIGRKFTGEKLHVYINPQRGMDEEVIRIH 357 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GI+ + ++ ++ F + I +N FD + F + + Sbjct: 358 GISEAFLTDKP-TFDQVAQSLYDFM---DGAEIIAHNASFDMNFLNMEFAKVGMHDFA 411 >gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] Length = 532 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 14/118 (11%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61 +I D ET G D DR + V E I D E + I Sbjct: 309 LIMDTETTGLDPQKGDRVIEVGIV------EMIGRKFTGEKLHVYINPQRGMDEEVIRIH 362 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GI+ + ++ ++ F + I +N FD + F + + Sbjct: 363 GISEAFLTDKP-TFDQVAQSLYDFM---DGAEIIAHNASFDMNFLNMEFAKVGMHDFA 416 >gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 247 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 26/236 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +VI D ET G + DR Q + + ++IE F D A+ + Sbjct: 1 MAKQYVILDTETTGTN-EEDRVIQLGYMVL--GAKEIEVHNEFCST---DVAIKFGAMEV 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP + + + +I +N + Sbjct: 55 HGITPDLLEGKPPCVETVAYKRLLELNTSENYLIIHNAPFDITMLEKEG----------- 103 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D L V + + R + A A GI AHDA D Sbjct: 104 -FKTQMKVIDTLRVAKHVMPDEEAHRLQYFRYKMELYKDEEKEAKALGIVV-KAHDAIGD 161 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 V + +++ F N+N + K++D+ N TP++ + FG + Sbjct: 162 VLVLKLFLSKLKDIVQAQFP------NENPVEKMVDLTN-TPILVKTFRFGKHKGK 210 >gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] Length = 296 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 9/105 (8%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70 ET G A DR A V P P V I G+T ++ Sbjct: 2 ETTGLWPARDRVLSVAVVLTAPDGAVQGRWSTL---LDPGCDPGP--VHIHGLTRERLAG 56 Query: 71 DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 A + + + ++ +N FD R Sbjct: 57 SP-TFAAVVDELSELLA---GRVLVAHNAAFDWRMLAGEALRIGR 97 >gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] Length = 209 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63 +V D ET D A ++ EV C P D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q G+ E E ++ +F N ++GY+ + + Sbjct: 87 RHQDLHD-GLSEKEALLQLIEFI--GNRPLVGYHIHYDKTILDIACRKHLGFPLPNRLIE 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ + L+ + + + HDA D A Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 188 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 189 AALVFVRLTKGDLPQF 204 >gi|316972225|gb|EFV55912.1| three prime repair exonuclease 1 [Trichinella spiralis] Length = 361 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 44/158 (27%), Gaps = 29/158 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP---------------- 47 V D ET G + A V V R+ F P Sbjct: 13 TLVFLDVETTGLVGKQPSITEIAVVAVGRR-----HFLTFSNNPSAYTKLPRVMSKLVSV 67 Query: 48 -ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDY 104 P A ITG+ P AEF + +H F +I +N ++FD Sbjct: 68 INPAKSISPTASLITGLNPANVAAQP-TFAEFYQTLHSFLLNLIQPVTLIAHNGLQFDFP 126 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 + R ++ D L + R + Sbjct: 127 ILKTEMARCGNPDLPATF----FCCDSLKLFRLMDNLL 160 >gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa] gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa] Length = 470 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 33/261 (12%) Query: 1 MTNH--FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPD 54 M N +D ET + +F + V ++ E+I S +P++ L Sbjct: 1 MENKTEIAFFDVETT-VPTRPGQGYAILEFGAILVCPQKLEEIRSYSTL-VRPSNPKLIS 58 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +V GI P+ + A+ + ++ G+N +RFD + R Sbjct: 59 SLSVRCNGIIPEAVVSAP-SFADIADTVYDIL--HGRIWAGHNIVRFD-----CVRIREA 110 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + D L ++ A + K+ LA G+ + Sbjct: 111 FAEIGRAAPEPKGTIDSLALL------------TQKFGRRAGNMKMASLATYFGLGN-QT 157 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR--KLIDIQNMTPLVHVSGMFGA 232 H + DV + ++ + + + P+ + A Sbjct: 158 HRSLDDVRMNVEVLKHCATVLFLNSPSSSSHVKSTPALSPENDRTEEKRPVFSLLTSNTA 217 Query: 233 SRSNTALIAPVAWHPRYKDSV 253 + +A HP D V Sbjct: 218 EAQYS--VASNTAHPDTFDMV 236 >gi|241759454|ref|ZP_04757558.1| oligoribonuclease Orn [Neisseria flavescens SK114] gi|241320236|gb|EER56569.1| oligoribonuclease Orn [Neisseria flavescens SK114] Length = 185 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ D E G + DR + A + D + ++V+ +D+ L D Sbjct: 6 NNLCWLDMEMTGLNPEHDRIIEVAMIITDSNLNVLAQSDVYVIHQSDELLNGMDEWNTTT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115 G T Q+ + EAE + + F S + N+I D + R Sbjct: 66 HGRTGLTQRVRESKLTEAEVEQNLLGFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|225025590|ref|ZP_03714782.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC 23834] gi|224941628|gb|EEG22837.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC 23834] Length = 238 Score = 68.3 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 9/125 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI--- 60 + D E G + DR + A V D + +E + +D+ L +A Sbjct: 53 NLCWLDMEMTGLNPEHDRIIEAAVVITDADLNILAQSESYAIHQSDELLEGMDAWNTSTH 112 Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 TG+T Q+ + EAE +R+ F + T + N + D + + + Sbjct: 113 ERTGLT-QRVKDSTLSEAEVEQRLLDFIAQWIPQGTSPLCGNTVHQDRRFMQRYMPKLEA 171 Query: 116 DSYRW 120 + Sbjct: 172 WFHYR 176 >gi|330985867|gb|EGH83970.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] Length = 237 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 58/194 (29%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G ++ D+ V ++ + E + P AV I G+ Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P A+ G AE +F I+G++ FD + + R + + Sbjct: 101 PS-AIAAGCEPAEALLDFMEFVGESP--ILGFHAP-FDQHMLSRALKESLDYRLRHPFFD 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L L D G+ H+A AD T Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199 Query: 185 LALVWLIREKKPKL 198 L ++ + Sbjct: 200 AELALILFSHARRQ 213 >gi|300704711|ref|YP_003746314.1| oligoribonuclease [Ralstonia solanacearum CFBP2957] gi|299072375|emb|CBJ43713.1| oligoribonuclease [Ralstonia solanacearum CFBP2957] Length = 219 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 N+ V D E G DR + A V D + + V D+ L +A Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGT 87 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K EA+ + F + + N+I D + + Sbjct: 88 HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147 Query: 116 DSYRW 120 + Sbjct: 148 YFHYR 152 >gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82] Length = 215 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTTALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591] gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591] Length = 226 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 26/208 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D + ++T F +P + + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAAAERCGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + +A + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAADIPFDASQAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A D T L + + ++ + Sbjct: 183 ALYDTERTAQLFCELVNRWKRMGGWPLA 210 >gi|58042842|ref|NP_932728.2| hypothetical protein CFDNVgORF119 [Choristoneura fumiferana DEF MNPV] gi|58013200|gb|AAQ91735.2| unknown [Choristoneura fumiferana DEF MNPV] Length = 230 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 16/203 (7%) Query: 3 NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPE 56 N + D ET G + + + V R+ E + + + Sbjct: 5 NTYAFLDLETTGLPKLQNNQTQITELSLQCVTRK-ELLGAARVCNKLTLCFEPTVDVSEQ 63 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 A +T + + + I F + P C++ YN FD N Sbjct: 64 ASALTQLNAENLRGQPQFDKRTVALIESFLALLSPPVCLVAYNGFAFDFPILYKHLKDNG 123 Query: 115 Y-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 + D+Y + + + W S+KL DL + Sbjct: 124 FAGAVHCSDAYHALFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLIDLYKRH 183 Query: 168 GIEHVNAHDAKADVYATLALVWL 190 +V H A+ D + LV Sbjct: 184 VGGNVEGHRAEDDCAMMMRLVQK 206 >gi|34497823|ref|NP_902038.1| oligoribonuclease [Chromobacterium violaceum ATCC 12472] gi|41017434|sp|Q7NVH5|ORN_CHRVO RecName: Full=Oligoribonuclease gi|34103679|gb|AAQ60040.1| oligoribonuclease protein [Chromobacterium violaceum ATCC 12472] Length = 181 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 TN+ + D E G + DR + A + D + + V D L D Sbjct: 5 TNNLIWLDMEMTGLNPDQDRIIEVAMIVTDSNLNVLAESPVLVIHQPDAILDGMDDWNKN 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + +K V EAE + + +F + N I D + + Sbjct: 65 THGKSGLIEKVKNSTVSEAEAEQLLLEFMMQHVPERATPMCGNTIHQDRRFMARWMPKLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AYFHYR 130 >gi|288939927|ref|YP_003442167.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] gi|288895299|gb|ADC61135.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] Length = 225 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 52/200 (26%), Gaps = 19/200 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D D V + +I+ + D + I IT Sbjct: 41 YLAIDLETTGLDQRQDLILSVGYVVL--HGPEIDLSTARHHLVRIDRSIPEASAVIHQIT 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +A G + + + ++ ++ + + R W Sbjct: 99 DDQAA-TGRELEDVLGEVLAALT---GRVMIAHHAGIEQGFLSQACQRC------WGRGL 148 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + ++ A+ +L L + AH+A +D + Sbjct: 149 PLRLVDTQTLAHR-------TLERRQIPFKASDLRLHALTSRYNLPRHGAHNALSDALSA 201 Query: 185 LALVWLIREKKPKLFEYLYD 204 L + Sbjct: 202 AELFLAQAAYRDDGRRLRLS 221 >gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401] gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401] Length = 215 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 176 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 20/192 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET D ++ A ++ F + + ++V I IT + Sbjct: 2 DCETTSLDPSVAEIVTIAATKIIDNRIITSDP--FEVRLSAPKSLGEDSVKIHHITHDEL 59 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + G+ E + + F N ++GY+ R + + Sbjct: 60 -KHGISEKQAMSALLNFI--GNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIY 116 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L + F L+ + I + + HDA D A + Sbjct: 117 NDKLLKLLPNGYF---------------DLSLEAICRHLQIPNYHKHDALEDAKAAAMVY 161 Query: 189 WLIREKKPKLFE 200 + F Sbjct: 162 LKLTRGSLPPFR 173 >gi|224023901|ref|ZP_03642267.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM 18228] gi|224017123|gb|EEF75135.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM 18228] Length = 163 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V E +++ P +Y + Sbjct: 1 MKDFAAIDFET--ANNQRSSVCSVGIVVVRND-EIVDTFYSLI-NPEPNY-YSYWCSQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V + ++I + + +N FD+ + +F D + Sbjct: 56 GLTREDTENAPV-FPDVWKQIEPLI---DGLPLVAHNRPFDESCLKAVFRVYQMDYPDYE 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D L V R ++ + + +L +A A G N H A AD Sbjct: 112 F------YDTLCVSRKVFPYL-------------PNHQLHTVAAACGYHLENHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895] gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895] Length = 215 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGTQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAVLFCEIVNR 200 >gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 209 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63 +V D ET D A ++ EV C P D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q G+ E E ++ +F N ++GY+ + + Sbjct: 87 RHQDLHD-GLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ + L+ + + + HDA D A Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 188 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 189 AALVFVRLTKGDLPQF 204 >gi|237710481|ref|ZP_04540962.1| exonuclease [Bacteroides sp. 9_1_42FAA] gi|237726988|ref|ZP_04557469.1| exonuclease [Bacteroides sp. D4] gi|265756507|ref|ZP_06090713.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229433844|gb|EEO43921.1| exonuclease [Bacteroides dorei 5_1_36/D4] gi|229455203|gb|EEO60924.1| exonuclease [Bacteroides sp. 9_1_42FAA] gi|263233695|gb|EEZ19310.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 162 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 29/190 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++F D+ET + V V R E + P DY I Sbjct: 1 MDNFAAIDFET--ANNERTSICSVGVVIV-RNGEIADRFYSL-VHPEPDYYLY-WNTRIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V +E +++ + +N FD+ + +F D Sbjct: 56 GLTQEDTAHAPV-FSEVWKQVAPKIE---GLPLVAHNKAFDERCLKAVFRTYCMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D +A G + +L +A G E N H A AD Sbjct: 107 ----YPDYDFYCTYQASRKL-----------KGLRNHQLHTVAGFFGFELENHHHALADA 151 Query: 182 YATLALVWLI 191 A + I Sbjct: 152 EACAWIARQI 161 >gi|209693722|ref|YP_002261650.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208007673|emb|CAQ77784.1| putative exonuclease [Aliivibrio salmonicida LFI1238] Length = 238 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET G D + V + + ++ +F K D + +V I GIT Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIRCRESQHWFVKAQDSL--EENSVVIHGIT 105 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + + ++ + + + R+F+D + Sbjct: 106 HSDLQGAP----DLRRILEKVLDALAGKVVVVHYRKIE---------RDFFDINLRNLIG 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ---WPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++D M+ F + + + S +L + G+ H A D Sbjct: 153 EGIVFPIVDTMQIEGDFQQEQAKGLINWIKGKRPESIRLANSRSRYGLPAYAPHHALTDA 212 Query: 182 YATLALVWLIREKK 195 AT L Sbjct: 213 IATAELFQAQIRYH 226 >gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] Length = 231 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 29/223 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V +I + +VF + + I GI+ Sbjct: 8 LVLDTETTGLDTESGHRIIEIGCV---ELINRIPTGKVFHRYLNPERDIPYHSFKIHGIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ + F S I+ +N FD + + + Sbjct: 65 EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNMELSKLNAGLI-----S 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R +A SP L L I N H A D Sbjct: 116 SDRVLDTLPLARKKFAGSPA--------------SLNALCKRFDISLENRELHGALVDAQ 161 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + + ++ N ++N+TP H Sbjct: 162 LLAKVYVELTGGLQTFLFDNECNQDSNSTFVQHKVRNLTPREH 204 >gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 225 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 65/216 (30%), Gaps = 21/216 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV+ D E G D D + + + I ++F+ P +AV I Sbjct: 18 KEFVVIDTELTGLDEKNDSIISIGAITMRERSILIG--DIFYRILNPQCKPKDKAVLIHK 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + + + + +F I + I D + R + W Sbjct: 76 LTSTELEQCP----DIKLILKEFIDFIKNRPIVGHFIEIDIKFLRKETSK---------W 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N + +D + + L ++A A I+ HDA D + Sbjct: 123 LNTGFTPEAIDTYIIFNWL---IEREIISKKFKGAKSLPEIAEAFDIKVDMLHDALYDAF 179 Query: 183 ATLALVWL---IREKKPKLFEYLYDYRNKNQLRKLI 215 T + + +K + L K + + Sbjct: 180 ITAQIFQREIIMVQKINASWFDLLKKIGKPTVSGYM 215 >gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM 17374] gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM 17374] Length = 231 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 28/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + +D + I++ DP + I GIT Sbjct: 26 FVALDFET--ANGTHESACSLGLALMDGTGKLIDTWYQLIK--PPSSFFDPANIEIHGIT 81 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + +F + ++ +N FD + + + + Sbjct: 82 PENVADAP-SFDKVWSAAREFIADR---LVIAHNATFDMTILKAMLHWYKMEI------- 130 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +R P+ +KL L+ G ++ AH A D Sbjct: 131 --PRIGYACTLRLSRKVWPEMNN----------YKLTTLSEVFGFDY-RAHYALDDAVNC 177 Query: 185 LALV 188 L Sbjct: 178 AKLF 181 >gi|254293981|ref|YP_003060004.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] gi|254042512|gb|ACT59307.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] Length = 298 Score = 67.9 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 44/220 (20%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQ--------WEKIESTEVFFCKPADDYLPDPEAVF 59 D ET G D + A V + + ++ + E Sbjct: 45 IDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQ------PKSPISEEITK 98 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + + + Q + +I +N FD ++ Sbjct: 99 LTGITNEMVAGQKID----IPAVEQLIKESD--LIIAHNAAFDRPFAER----------- 141 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 L ++ + +++G S KL LA+ +G + AH A Sbjct: 142 ------------LTPAFKAKPWACSLVDIDWKEEGYESPKLSFLAMEHGFYY-KAHRADI 188 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 D +AT+ L+ + + + ++ Sbjct: 189 DCWATIKLLAQRLKTSGDRAMAHLLTSAREERWRIWATNT 228 >gi|282856350|ref|ZP_06265629.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] gi|282585721|gb|EFB91010.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] Length = 351 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 24/193 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V+ D E+ G A P + + VR + +++ +P + +TGIT Sbjct: 15 YVVLDVESQG--YARFCPIEISAVRFAPDGQCLDAYSSL-VRPRVARV-SRYVSDLTGIT 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R + E + F ++ I+G+ D + ++ + Sbjct: 71 TDMVRRAPLP-REVIGSLRDFI--GDSVIVGHAVAENDLPIIDHFCQELYHARLENLY-- 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D A P G + L+ LA I+ H A+AD T Sbjct: 126 -------VDTFYWAQALFPAL--------GTGHYNLKALAEHFVIDAQTFHRAEADCRTT 170 Query: 185 LALVWLIREKKPK 197 L ++ + + Sbjct: 171 ARLYQILHDAAQR 183 >gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855] gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855] Length = 1084 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 22/219 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63 +V+ D E D R A+ ++V R ++ P D + E + + G+ Sbjct: 689 YVMVDLEATSTDPRHCRVAEIGALKV-RDGTVVDRFSELVQLPEDLTADERETLRTVCGL 747 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + EA F ++ +N R+D R + + D++ + Sbjct: 748 DPASDFDEARPEAAVWADFCAFVD--GAPLVAHNGQRYDFRVLRRLANTHEADAHWAT-- 803 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D++ A + PD ++ + + AH A AD Sbjct: 804 -------TYDLLPAAHELFPDLRRYDAAHLRE---------TLLDDDADTAHRALADCED 847 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 ++ ++E++ + L L + ++ P Sbjct: 848 QQRILARMQEERARRRRRLAHEPLLPLLVAALTYESPAP 886 >gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 232 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 27/188 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G + A DR + D ++ P + I IT Sbjct: 2 IFLDTETTGLE-AKDRICALGMITEDEAHYEL---------INPGKKIPPSSSAIHHITN 51 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + S + + P T ++ +N D + Sbjct: 52 EMVKDAPAFAESLSAEKLKLLNTPETILVSHNAPFELDMLQKEGLAWQGR---------- 101 Query: 126 NSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++D ++ + D ++ + + H A +D Sbjct: 102 -----IIDTLKCSKSLMDDLEGYALQFLRYELRLYREEANVFKEHEIPIVPHHALSDALH 156 Query: 184 TLALVWLI 191 T ++ + Sbjct: 157 TKMVLEYL 164 >gi|312960549|ref|ZP_07775055.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311285075|gb|EFQ63650.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 105 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 5/91 (5%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G V R + V + F D D A+ + GIT Sbjct: 6 VVLDTETTGMPVTDGHRIIEIGCVEL-MGRRLTGRH--FHVYLQPDRDSDEGAIGVHGIT 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95 + AE + +F + I Sbjct: 63 DEFLKGKPR-FAEVADEFFEFINGAQLSFIT 92 >gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188] gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635] gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188] gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635] gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341] gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630] Length = 188 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F +D+ET A V+V + ++ + I GI Sbjct: 13 NFYAFDFET--ASYDKHSACSIAIVKV-ENSQIVDEFYTL---IKPETPFFWRNTQIHGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E ++I F PN ++ +N D Y Sbjct: 67 HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L ++ P+ + KL + I N HDA D A Sbjct: 119 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 164 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 165 CAEILLQQEQR 175 >gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 335 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 45/176 (25%), Gaps = 26/176 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ + D+ET + VRV R ++ P + + Sbjct: 1 MSRTWTAIDFET--ANHDRGSACAVGLVRV-RDGAVVDRYTTLIRPPRQVDFFSRHNIAV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + RI +F + + +N FD R W Sbjct: 58 HGITAADVADAP-SWEQAHARIVEF---ADGGPLVAHNAAFDMGVLRQACGHTGLSHPAW 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + R + G KL + G + H Sbjct: 114 EYA------CTLALSRRTW-------------SGLPDHKLPTVCAHIGHRVTHHHR 150 >gi|66047927|ref|YP_237768.1| exonuclease [Pseudomonas syringae pv. syringae B728a] gi|63258634|gb|AAY39730.1| Exonuclease [Pseudomonas syringae pv. syringae B728a] Length = 237 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|212693424|ref|ZP_03301552.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855] gi|212664068|gb|EEB24642.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855] Length = 162 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 29/190 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++F D+ET + V V R E + P DY I Sbjct: 1 MDNFAAIDFET--ANNERTSICSVGVVIV-RNGEIADRFYSL-VHPEPDYYLY-WNTRIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V +E +++ + +N FD+ + +F D Sbjct: 56 GLTQEDTAHAPV-FSEVWKQVAPKIE---GLPLVAHNKAFDERCLKTVFRTYCMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +D +A G + +L +A G E N H A AD Sbjct: 107 ----YPDYDFYCTYQASRKL-----------KGLRNHQLHTVAGFFGFELENHHHALADA 151 Query: 182 YATLALVWLI 191 A + I Sbjct: 152 EACAWIARQI 161 >gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] Length = 836 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 33/195 (16%) Query: 2 TNHFVIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + I D E G + + Q V + +S E D Sbjct: 24 KRKYAIVDLEATSAGSNA---KIIQVGIVII-EDGRIRQSYET---DVNPHERLDEHIKQ 76 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TG+T + + EF++ + F + + +N++FD + ++ Sbjct: 77 LTGLTDARLKKAP----EFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFE--- 129 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R D +++ + Y + L LA IE +AH A A Sbjct: 130 ----LTTPRIDTVELSQIFYPTLE-------------RYNLGALAAELEIELHHAHSALA 172 Query: 180 DVYATLALVWLIREK 194 D AT L+ +REK Sbjct: 173 DAMATAQLLLKLREK 187 >gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20] gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20] Length = 177 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 54/207 (26%), Gaps = 31/207 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + A V + ++ + I GI Sbjct: 2 NFTALDFET--ANHEKHSAVSIALAVVRDN-QVVDEFYSL---IKPETYFSARNTAIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E I F+ ++ +N FD+ + Sbjct: 56 TAADVAQAPK-FPEIWDMIAPLFTEDK--LVVAHNAAFDNGILK---------------- 96 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D D+ Y + KL +A GI + H+A D Sbjct: 97 ---GTLDYYDIAEPHYMLLDTVRSSRQLFPDFKNHKLNTVAQNLGITLDHHHNALDDA-- 151 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210 +A ++ + KN+ Sbjct: 152 -VAAANILIYEADHFGVESLKRFVKNK 177 >gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 222 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 61/235 (25%), Gaps = 33/235 (14%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57 ++ D ET G + + R + E ++ + + P ++ Sbjct: 1 MERLIVLDTETTGIEPSEGHRIIEIGCT------EIVDRQITENNEYHEYIQPSRNVGDS 54 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 V I GIT + F + F + + +N FD + + D Sbjct: 55 VRIHGITDKFLTNKPK----FKAIVKTFLTYIEGATLIIHNAPFDLGFLNHELKLIGIDE 110 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175 + + D L++ + + L L H Sbjct: 111 RIE---DKCNIIDSLELSKQQRPGTL--------------HNLDALCRRFEINSSARTVH 153 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 A D + + + LF + +I ++ + V Sbjct: 154 GALLDAKILAQVYLAMTGGQSTLFNNEQTINEQANTNNIIRVERAIGKIKVVYAN 208 >gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 209 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63 +V D ET D A ++ EV C P D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q G+ E E ++ +F N ++GY+ + + Sbjct: 87 RHQDLHD-GLSEKEALIQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ + L+ + + + HDA D A Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 188 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 189 AALVFVRLTKGDLPQF 204 >gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 234 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 8/105 (7%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D R + V +I + + F + + I GI+ Sbjct: 8 IVLDTETTGLDTKSGHRIIEIGCV---ELINRIPTGKTFHRYLNPERDIPYHSFKIHGIS 64 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 + + ++ + F S I+ +N FD + Sbjct: 65 EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNME 105 >gi|330970909|gb|EGH70975.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT] Length = 237 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|260424856|ref|ZP_05779017.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470] gi|260403394|gb|EEW96941.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470] Length = 196 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 46/188 (24%), Gaps = 26/188 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G + A + V E ++ + +TGI Sbjct: 30 TYTVMDIETTGM---YSDITEIAALCV-VSGEIRDTFHTLVKAKGP---IEKRVERLTGI 82 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + F + + + D + Sbjct: 83 TSDMLEEQP-PIDDVLPIFMTFIE---GFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDYI 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +S LL P R+ + ++ LA + H A D A Sbjct: 139 DTHSLAKLL---------------LPEREGEHRKYSVKALAEYYELPCSTFHRAMDDCMA 183 Query: 184 TLALVWLI 191 L + Sbjct: 184 EKMLFERL 191 >gi|237802391|ref|ZP_04590852.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025248|gb|EGI05304.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 237 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G +++ D+ V ++ + E + P AV I G+ Sbjct: 44 VVLDLETSGLNMSRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P A+ G E + F ++ ++G++ + +++ R +S + + Sbjct: 101 PS-AIAAGSEPVEALLDLMAFI--GDSPVLGFH-----APFDQHMLSRALKESLGYRLQH 152 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L M A L D G++ H A AD T Sbjct: 153 PFFDIAELAPMLCEQA-------------NLRHAGLDDWTRFFGLQAEERHHASADALVT 199 Query: 185 LALVWLIREKKPK 197 L ++ + Sbjct: 200 AELALILFSHARR 212 >gi|289674377|ref|ZP_06495267.1| exonuclease [Pseudomonas syringae pv. syringae FF5] Length = 237 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDV 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531] gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531] Length = 179 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 27/194 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++D ET G D A V+ E + + + A+ P+A I Sbjct: 1 MEKILVFDTETTGFRSD-DEVLTLA--VVNGTGETMVDSMYAPVRKAEW----PDAERIN 53 Query: 62 GITPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I+P + E + F+ P+T ++GYN +++ R Sbjct: 54 RISPAMVADCDPILTHRE---ELECLFNAPDTLLVGYNIEFDIRLLAQSG--------IR 102 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + N + R + G +W + A ++ AH A A Sbjct: 103 ITNANRHDVMLAFSAFRKVPDARRGGYRWWKLTECAEYYR-------YDWGTTVAHGALA 155 Query: 180 DVYATLALVWLIRE 193 D ATL + E Sbjct: 156 DTLATLFCYRKMSE 169 >gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322] gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200] gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8] gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704] gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol] gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11] gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855] gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860] gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411] gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470] gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322] gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200] gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8] gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704] gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol] gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11] gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411] gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860] gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855] gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470] gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000] gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017] gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141] gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244] gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012] gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342] gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346] gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF] Length = 188 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F +D+ET A V+V ++ + I GI Sbjct: 13 NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 66 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E ++I F PN ++ +N D Y Sbjct: 67 HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L ++ P+ + KL + I N HDA D A Sbjct: 119 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 164 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 165 CAEILLQQEQR 175 >gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 222 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 49/210 (23%), Gaps = 31/210 (14%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D ET G D V++ F +TG Sbjct: 37 TYTVIDLETTGLKPFQGDEIIAIGAVKI-INGNIT-RP-AFHAYVNPQREIPEVVQRLTG 93 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+P+ + + +I +++ FD + Sbjct: 94 ISPKTVQNAPPLTN----TLTTLLDFARNSVIVGHSVNFDLAFLNKHLSS------LTGK 143 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D +D+ ++ L++ A I H A D Sbjct: 144 KLTPRLLDTVDLGI-------------YLFPREPNYSLENFAQKFAISLQGRHTALGDAV 190 Query: 183 ATLALV----WLIREKKPKLFEYLYDYRNK 208 + ++ K + L K Sbjct: 191 ICAKVFLNFLKILELKNINTWWQLSQEIYK 220 >gi|62390175|ref|YP_225577.1| DNA polymerase III, epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|41325511|emb|CAF19991.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Corynebacterium glutamicum ATCC 13032] Length = 197 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 51/196 (26%), Gaps = 20/196 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62 + D ET G + V + + I+ + + + I Sbjct: 14 KLLAVDVETTGLKPHRHQIVSIGWVPI--NGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQ 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + G+ E ++ Q + + + + ++F Sbjct: 72 LTDDEIA-AGIDIKEALGQLLQALQ---GRAMLAHFSPIERDFISAACLKHF-------- 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L+D +P +D +L + G+ + + H A D Sbjct: 120 -GTLLDVPLVDTFAMERRHMERMSTYPRGED----LRLARIRQRYGLPNYSNHQALTDAL 174 Query: 183 ATLALVWLIREKKPKL 198 A + + Sbjct: 175 ACAEVYLVQITHLRAN 190 >gi|19552509|ref|NP_600511.1| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|21324057|dbj|BAB98682.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Corynebacterium glutamicum ATCC 13032] Length = 218 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 51/196 (26%), Gaps = 20/196 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62 + D ET G + V + + I+ + + + I Sbjct: 35 KLLAVDVETTGLKPHRHQIVSIGWVPI--NGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQ 92 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + G+ E ++ Q + + + + ++F Sbjct: 93 LTDDEIA-AGIDIKEALGQLLQALQ---GRAMLAHFSPIERDFISAACLKHF-------- 140 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L+D +P +D +L + G+ + + H A D Sbjct: 141 -GTLLDVPLVDTFAMERRHMERMSTYPRGED----LRLARIRQRYGLPNYSNHQALTDAL 195 Query: 183 ATLALVWLIREKKPKL 198 A + + Sbjct: 196 ACAEVYLVQITHLRAN 211 >gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia amoebophila UWE25] gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus Protochlamydia amoebophila UWE25] Length = 216 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 27/211 (12%) Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 + A + E F + PE+ I IT + G A+ Sbjct: 2 IEIAAY----DPVQNRRFEKF---VHPGFPIPPESTAIHHITDEMVANAG-SFADVGAEF 53 Query: 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 +F + +I +NN FD ++ R+ F RN + W LD ++ + Sbjct: 54 VEFCA-GEVVLIAHNNDNFDLHFLRHEFERN--------QLILPTHWKFLDSLKWARRYR 104 Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 D LQ L GI NAH A DV + + + + Sbjct: 105 SDL----------PRHTLQFLREIYGITANNAHRALDDVIVLERVFRSMVDDLEIQDVFD 154 Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 R + PL + + + Sbjct: 155 LLNRPRAIQHMPFGKHQGQPLNKIPKNYISW 185 >gi|300858320|ref|YP_003783303.1| hypothetical protein cpfrc_00902 [Corynebacterium pseudotuberculosis FRC41] gi|300685774|gb|ADK28696.1| hypothetical protein cpfrc_00902 [Corynebacterium pseudotuberculosis FRC41] gi|302206036|gb|ADL10378.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis C231] gi|302330589|gb|ADL20783.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis 1002] gi|308276273|gb|ADO26172.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis I19] Length = 203 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 22/194 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAV 58 F+ D ET + V ++ ++ + D + + A+ Sbjct: 28 KTRFLAVDMETTALLPTKGKILSIGWVPIEDGRVQLADAGHVFIRSENLEHDSVGNSAAL 87 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 IT +G E + S ++ + + + R+F Sbjct: 88 --HNITDTMLA-EGESEHSAMEML---LSSLRGRVLLAHFAPIELRFGDAACRRHFGAPL 141 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R +D M +P +D +L + G+ H +H+A Sbjct: 142 ---------RVPYVDTMELERRHMERMGTYPRGED----LRLARVRKRYGLPHYRSHNAL 188 Query: 179 ADVYATLALVWLIR 192 D A L + Sbjct: 189 TDALACAELYLALN 202 >gi|289664483|ref|ZP_06486064.1| exonuclease, RNase T and DNA polymerase III [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 322 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 46/185 (24%), Gaps = 38/185 (20%) Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + D + A V + + C + PEA I GI+ Sbjct: 51 IFVDTETTGLNQDGRDEVLEIAIV--NADGTIL--LNTLVCPARNTAW--PEAQAIHGIS 104 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ + +I + ++ YN ++ Sbjct: 105 PQDVAGAP-SWSGLLPKIASICA--GKTVVFYNAPFDTSFF------------------- 142 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183 + KL D A +G A H A D A Sbjct: 143 --------PTRFFPNVECAMRSYSEVNPGHSGWVKLSDAASESGYTSTGAFHRALEDALA 194 Query: 184 TLALV 188 + Sbjct: 195 CRHIW 199 >gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469] gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469] gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253] gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227] Length = 215 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E + I + N I+ +N FD + R Sbjct: 80 IDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T A + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACTAAGMAFDSTQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTEQTAMLFCEIVNR 200 >gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320] gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320] Length = 301 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 75/237 (31%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62 V+ D ET G + + V+V ++I S D P PE +TG Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + + + ++ +N +FD + N F + S+ S Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFENRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL------ANGIEHVNAHD 176 + + + + Y G + + L AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFYLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A] gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A] Length = 206 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 28/198 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V+ D ET G D D + A V V+ +E+ + KP + +P+++ I Sbjct: 15 VVVDVETGGFDHEKDALLEVAAVLVNFNEAGNLAPVETFH-YHVKPFEGAHLNPDSLKIN 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 GI P LR + E ++++ I+ +N FD + + R Y Sbjct: 74 GIDPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINALAARCNY 133 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 N + LD + + A + AH Sbjct: 134 ------QHNPFHPFSSLDTVSLGALAYGQTVLARIAK-----------AAGFEYDSERAH 176 Query: 176 DAKADVYATLALVWLIRE 193 AK D T + I Sbjct: 177 GAKYDTELTAQIFCHIIN 194 >gi|254850923|ref|ZP_05240273.1| exonuclease family [Vibrio cholerae MO10] gi|21885332|gb|AAL59738.1| unknown [Vibrio cholerae] gi|254846628|gb|EET25042.1| exonuclease family [Vibrio cholerae MO10] gi|259156302|gb|ACV96248.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind4] Length = 302 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + V+V + +V +TG Sbjct: 53 VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176 + + + + Y G + F L ++AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRA 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|330965486|gb|EGH65746.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 237 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G ++ D+ V ++ + E + P AV I G+ Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P A+ G E +F I+G++ FD + + + ++ + Sbjct: 101 PS-AIAAGSEPVEALLDFMEFVGESP--ILGFHAP-FDQHMLGRALKESLDYRLQHAFFD 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L L D G+ H+A AD T Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199 Query: 185 LALVWLIREKKPKL 198 L ++ + Sbjct: 200 AELALILFSHARRQ 213 >gi|312140266|ref|YP_004007602.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889605|emb|CBH48922.1| putative DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 228 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 23/178 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET GRD R + V V + + +A + GI+ Sbjct: 9 ICAFDLETTGRDPLSARIVTGSVVTVGGEGHR-----SRNWIVDPGVEIPVDAAAVHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +A G A R I + ++ N +D R + Sbjct: 64 TAQARERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPP----- 118 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ Y + + D L L G+ AH+A++D Sbjct: 119 ------LSGYGLVVDPYVIDREMDR-----DRRGKRTLSALCEHYGVVLAAAHEAESD 165 >gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661] gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661] Length = 221 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 51/200 (25%), Gaps = 40/200 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V V + + C D P A+ I IT Sbjct: 4 VIDTETCGL---QGGIVEVASVDV-IDGKIVNPMSDLIC---PDRPISPHAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E R + +N FD R W Sbjct: 57 MVADKPPIEHAIGR-------YHGSPYYVAHNASFD---------RRMLPEMHGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R + WP + + ++AH A D Y T Sbjct: 97 --ICTMTLARGL---------WPGIKYSNQALRETLKLEVTPPADLHAHRALYDCYVTA- 144 Query: 187 LVWLIREKKPKLFEYLYDYR 206 LIR ++ R Sbjct: 145 -ALLIRIMDYSGWDAAEMIR 163 >gi|85711670|ref|ZP_01042727.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145] gi|85694530|gb|EAQ32471.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145] Length = 244 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 17/194 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET G D + A V + Q + + KP D E+V I GIT Sbjct: 55 VAVDFETTGLDCQRNSIVSIAVVPMSAQRIFMSQARQWVVKPRQDL--TDESVVIHGITH 112 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +EA + + + + N + + + R N Sbjct: 113 SDIQSAPDIEA-ILPELLDLVA--GKIWVVHYNGIERPFLQKAMDAR----------FNE 159 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT--SFKLQDLALANGIEHVNAHDAKADVYA 183 + + ++D M F + SR G S +L D + HDA D A Sbjct: 160 HIHFPVIDTMAIEARFHRQRRSFWSRLMGKRPLSIRLADSRERYNLPFYAPHDALTDALA 219 Query: 184 TLALVWLIREKKPK 197 L+ + Sbjct: 220 CAELLQAQIRHRYS 233 >gi|172051553|emb|CAQ34948.1| hypothetical protein [Photobacterium damselae subsp. piscicida] Length = 302 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 75/238 (31%), Gaps = 15/238 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFIT 61 V+ D ET G + + V+V ++I S D P PE +T Sbjct: 52 LVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELT 111 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + + + ++ +N +FD + F + S+ S Sbjct: 112 GITDDMVQGQHIDDLLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACS 165 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAH 175 + + + + Y G + F L ++AN + + Sbjct: 166 ASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRR 225 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 226 TVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] Length = 178 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 30/208 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+++D ET + +R + + V + + + + D V +T Sbjct: 1 MARFIVFDVET--PNRKNNRISAIG-ITVVEEGKISKEFYSL---VNPETNFDYFNVKLT 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ E ++I FS ++ +N FD +N Y Sbjct: 55 GISKASVKDAP-TFPELWQQIEPLFSDG---MLVAHNASFDMNVL-----KNCLLDYEID 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W YA ++ S KL + GI H A +D Sbjct: 106 WK--------------PYARYLCTVKMGRSLFPDRSHKLNMVCEDFGISL-QHHRADSDS 150 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209 +A ++ E ++ +++ K Sbjct: 151 HACAEILLRYLEAGAEVKDFIRTCSFKK 178 >gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1] Length = 143 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 12/121 (9%) Query: 6 VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + V V F L DPEA + Sbjct: 9 ILLDTETTGMNKLGVHYEGHRIIEIGTVAV-INLPLTGR--NFHVYVKPARLVDPEAYGV 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + A+ + F + +N FD + F D + Sbjct: 66 HGISDEFLADKP-TFADITPEFLDFIRGGE---LVIHNAAFDIGFKDYEFRMLQQDIPKT 121 Query: 121 S 121 Sbjct: 122 E 122 >gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 29 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKLSP-AVLIHGLAP 86 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 87 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLARALKESLDYRLQHAFFDA 142 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H+A AD T Sbjct: 143 AEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVTA 185 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 186 ELALILFSHARRQ 198 >gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)] gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 241 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 42/166 (25%), Gaps = 18/166 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D DR A V D V A + G+T + Sbjct: 12 FDTETTGVDTETDRIVSAALVVQDAPG---LRPRVTRWLVNPGVPVPESATAVHGLTEEY 68 Query: 68 ALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R G A + + + ++ N FD R+ Sbjct: 69 VQRHGRWPAPVMYEMAEALTEQARAGRPLVVMNAP-FDLTLLDRELRRH----------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 S ++ P + L DL G+E Sbjct: 117 RASSLGRWLERTPLHVLDPHVLDKHLDRYRKGRRTLTDLCAHYGVE 162 >gi|333030485|ref|ZP_08458546.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332741082|gb|EGJ71564.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 164 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 28/175 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++FV D+ET + V V + E ++ + Y + Sbjct: 1 MDNFVAIDFET--ANANRSSICSVGIVIV-KNGEVVDRFYQLIRPIPNFYTY--WNTRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T E I + +N FD+ + Sbjct: 56 GLTDYDTAMAPR-FPEVWSSIAPKLQ---GLPLVAHNSAFDESCLKKA------------ 99 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ ++ Y F + +L +A G N H+ Sbjct: 100 -------FEAYQLIYPNYIFYCTLKASRKSLPRLINHQLGTVASCCGYSLQNHHN 147 >gi|239932382|ref|ZP_04689335.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440749|ref|ZP_06580139.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343644|gb|EFE70600.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 241 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 57/190 (30%), Gaps = 18/190 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V D V A + G+T + Sbjct: 12 FDTETTGVDVEADRIVSAALVVQDAPGT---RPRVTDWLVNPGVPVPAAATEVHGLTQEH 68 Query: 68 ALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+G A + Q + ++ N FD R+ S + Sbjct: 69 LQRNGRWPAPVMYEVAQALAEQARVGRPLVVMNAP-FDLTLLDRELRRHRASSLSRWF-- 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R LL + ++ L DL G+ AHDA AD A Sbjct: 126 --ERVPLL--VLDPRVLDKHLDRY-----RKGRRTLTDLCAHYGVPLEGAHDAAADAVAA 176 Query: 185 LALVWLIREK 194 L + + + Sbjct: 177 LEVTRAVGRR 186 >gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2] gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3] gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2] gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3] Length = 183 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F +D+ET A V+V ++ + I GI Sbjct: 8 NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E ++I F PN ++ +N D Y Sbjct: 62 HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L ++ P+ + KL + I N HDA D A Sbjct: 114 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 159 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 160 CAEILLQQEQR 170 >gi|262392974|ref|YP_003284828.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|262336568|gb|ACY50363.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 209 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D +V I I Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQP--FEVRLRAPQSLDSGSVKIHRIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E E + F N ++GY+ + + + Sbjct: 88 HQDLVD-GISEKEALLELLDFI--GNRPLVGYHIRYDKKILDLACLRQLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189 Query: 185 LALVWLIREKKPKL 198 + + + Sbjct: 190 ALVFVRLTKGDLPN 203 >gi|323492075|ref|ZP_08097237.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323313636|gb|EGA66738.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 210 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 20/193 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D +V I I Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHKIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E + ++ +F N ++GY+ + + + Sbjct: 88 HQDLVD-GIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACQKQLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPMQDKHDALQDAISA 189 Query: 185 LALVWLIREKKPK 197 + + + Sbjct: 190 ALVFVRLTKGDLP 202 >gi|255719107|ref|XP_002555834.1| KLTH0G18590p [Lachancea thermotolerans] gi|238937218|emb|CAR25397.1| KLTH0G18590p [Lachancea thermotolerans] Length = 323 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 9/125 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFC------KPADDYLPDP 55 V D E G D D + + D I+ V C + + Sbjct: 76 IVWVDCEMTGLDHVNDHIIEICCIITDGDLNIIDEAGYESVIHCDKKIMDAMNEWCIDHH 135 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + +T G VE E + ++ ++ N++ D + F + Sbjct: 136 GSSGLTQKVLDSTKTTGQVEEELLAYLRKYIPAERKGVLAGNSVHMDRVFMMREFPKVID 195 Query: 116 DSYRW 120 + Sbjct: 196 HLFYR 200 >gi|319440529|ref|ZP_07989685.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM 44702] Length = 214 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 22/187 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---EAVFIT 61 + D ET G D DR V +D I+ + D D E+ + Sbjct: 26 LLAVDVETTGLDPKRDRLLSIGWVPLD--GRVIDLSGAREVILRDTVDHDAGVGESATLH 83 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T G+ E + + + + + + + R Sbjct: 84 GLTDDTVA-TGIPAGEALGELLEAIR---GRALLAHFAVMETGFLDAVCRREL------G 133 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D LD+ R ++ +L + G+ + + H A D Sbjct: 134 LRFEVPVVDTLDLERRH-------MERMGTYPRGEDLRLPRVRQRYGLPYYSNHRAVTDA 186 Query: 182 YATLALV 188 A L Sbjct: 187 LACAELY 193 >gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM 44702] Length = 228 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 44/172 (25%), Gaps = 30/172 (17%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A + ++ + A + GIT + Sbjct: 15 FDLETTGPDPLTARIVTSALITINGSHR-----DDLEILADPGIPIPEGATAVHGITTEY 69 Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A G E + +I YN ++ Sbjct: 70 AREHGRPHDEVLAETIERIRRGWSEGATLIIYNAAYDLTVLRTLE----------PTFTV 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +D L V +A + +L + G+ NAH+ Sbjct: 120 DGPVFDPLVVDKAKDRYR------------KGGRRLTQVCEHYGVTLDNAHE 159 >gi|330956986|gb|EGH57246.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 237 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G ++ D+ V ++ + E + P AV I G+ Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P ++ + F I + FD + + + + + Sbjct: 101 PSTIAAGSEP----AQALLDFMEFVGDSPILGFHAPFDQHMLARALKESLDYRLQHPFFD 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L L D G+ H+A AD T Sbjct: 157 AAEIAPML-----------------FEQANLRHAGLDDWTRYFGLHAEERHNASADALVT 199 Query: 185 LALVWLIREKKPKL 198 L ++ + Sbjct: 200 AELALILFSHARRQ 213 >gi|330898819|gb|EGH30238.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT] Length = 237 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 330 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 77/295 (26%), Gaps = 38/295 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 19 VIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSL---LNPGVDPGP--THVHGLTAA 73 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +F+ + V + + +N+ FD + + S Sbjct: 74 MLEDQP----QFADVVDDVVKVLDGRTLVAHNVAFDYAFLAAEAELAEAELPIDS----- 124 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 ++ + +L+ LA G+ HDA D Sbjct: 125 ----VMCTVELARRLDLGIDN----------LRLETLAAHWGVPQERPHDAFDDAMVLTG 170 Query: 187 LVWLI--REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 ++ R ++ ++ ++ + + + PL ++ + Sbjct: 171 VLASALERARQRDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASR--------MPCPYLN 222 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 + + + + +L +R+ + V V N Sbjct: 223 PGHYVRGRPLVQGMRVALAAEVGRTHEELVERILHAGLAYSDAVDRETSLVICND 277 >gi|91228447|ref|ZP_01262371.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|269966808|ref|ZP_06180881.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus 40B] gi|91187982|gb|EAS74290.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|269828475|gb|EEZ82736.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus 40B] Length = 209 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D +V I I Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQP--FEVRLRAPQSLDSGSVKIHRIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E E + F N ++GY+ + + + Sbjct: 88 HQDLVD-GISEKEALLELLDFI--GNRPLVGYHIRYDKKILDLACLRQLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189 Query: 185 LALVWLIREKKPKL 198 + + + Sbjct: 190 ALVFVRLTKGDLPN 203 >gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909] gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909] Length = 226 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++++ + + T F +P + PEA+ G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 192 HSALYDTMQTAKLFCELVNR 211 >gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1] Length = 236 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + D+ V ++ I+ + F +V I G+ P Sbjct: 42 VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AL G AE + F N+ ++ ++ + + + R +S + + Sbjct: 100 S-ALAAGCDPAEALLDLLDFI--GNSPVLAFH-----APFDQRMLARALKESLGYRLQSP 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L M + L D G++ H A AD T Sbjct: 152 FLDIAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198 Query: 186 ALVWLIREKKPKL 198 L ++ + + Sbjct: 199 ELALILFSQARRQ 211 >gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440] Length = 236 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + D+ V ++ I+ + F +V I G+ P Sbjct: 42 VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AL G AE + F N+ ++ ++ + + + R +S + + Sbjct: 100 S-ALAAGCDPAEALLDLLDFI--GNSPVLAFH-----APFDQRMLARALKESLGYRLQSP 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L M + L D G++ H A AD T Sbjct: 152 FLDIAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198 Query: 186 ALVWLIREKKPKL 198 L ++ + + Sbjct: 199 ELALILFSQARRQ 211 >gi|71667552|ref|XP_820724.1| exonuclease [Trypanosoma cruzi strain CL Brener] gi|70886080|gb|EAN98873.1| exonuclease, putative [Trypanosoma cruzi] Length = 223 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 5/90 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFIT 61 + D ET G D V + ++ FF +A + Sbjct: 4 ICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 G++ + +E + F + Sbjct: 64 GLSFEMLRDAPPLE-DVISDFAAFLIQLDG 92 >gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1] gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1] Length = 217 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAAAERAGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T +A + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMAFDGAQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTEQTAQLFCEIVNR 200 >gi|86160112|ref|YP_466897.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85776623|gb|ABC83460.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 200 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 12/186 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D + V ++ +P P +V + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 AE + + ++ ++ + + + F + Sbjct: 76 TRGAPA-LAEVLPELERRLR--GAVLLVHHAP-IELGFLKRAFRAAGLRWPAPPVVDTVK 131 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 LD + + ++P L G+ AHDA D AT L Sbjct: 132 LLLRLD--------ARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAEL 183 Query: 188 VWLIRE 193 ++RE Sbjct: 184 FLVLRE 189 >gi|227501727|ref|ZP_03931776.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|227077752|gb|EEI15715.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] Length = 223 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET + R A VR+D + + A + GIT Sbjct: 9 LAFDLETTSANPKDARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQAATDVHGITT 63 Query: 66 QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +KA +G E + +I YN Sbjct: 64 EKAQAEGHPHEEVLKNTVDAIKEAWDDGLTLIVYNAAFDLTVL----------------- 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + + + Y +W L + G+E NAH+A AD Sbjct: 107 RSLTGDFTVTGPVFDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 161 Query: 183 ATLALVWLIREKKPKLFEYL 202 A + W + + Sbjct: 162 AAARVAWKQVRQHYPNLAQM 181 >gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080] gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080] Length = 216 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 72/210 (34%), Gaps = 35/210 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYL 52 M + F VI D ET G + A D + A + VD + E + T F +P + Sbjct: 9 MRDRFRGFLPVIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEPFEGAN 68 Query: 53 PDPEAVFITGITPQKALRDGVVEA----EFSRRIHQFFSV--PNTCIIGYNNIRFDDYYS 106 + A+ TGI P+ LR + EA + RI + N I+ +N FD + Sbjct: 69 IEASALEFTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHFDAGFI 128 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 + R + S +D + + + L Sbjct: 129 NSASLRCDIKRNPFH---PFSHFDTATLAGLAFGHTV----------------LAQACRR 169 Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194 GIE N AH A D T L I + Sbjct: 170 AGIEFNNSEAHSAAYDATKTAELFCCIVNQ 199 >gi|322822112|gb|EFZ28257.1| exonuclease, putative [Trypanosoma cruzi] Length = 271 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 5/89 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFIT 61 + D ET G D V + ++ FF +A + Sbjct: 52 ICVDLETTGFSAQCDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 111 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPN 90 G++ + +E + F + Sbjct: 112 GLSFEMLRDAPPLE-DVISDFAAFLIQLD 139 >gi|297559415|ref|YP_003678389.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843863|gb|ADH65883.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 339 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 34/200 (17%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFIT 61 + + D ET G + R + A VRV + +E P Sbjct: 23 YAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDPRAPVGGREF-------H 75 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + A+ R+ + S ++ +N+ F+ + + Sbjct: 76 GIGEGDTVGAPTA-AQVVPRLTELLS---GAVVVGHNLDFEQRFLASELVPAGLP----- 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G + L +R+ S +L G H A D Sbjct: 127 --TGQAGLCTLRALRSQVEL-------ERYSLPKASHRLS------GDWPTGQHTALGDA 171 Query: 182 YATLALVWLIREKKPKLFEY 201 A L+ + P Y Sbjct: 172 RACAKLLAEMLTNAPGELRY 191 >gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ] gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ] Length = 240 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 6/157 (3%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 FV+ D ET G +V D V ++ I+ + F C E+V I G Sbjct: 42 QRFVVLDLETTGLNVERDVVLSIGAVLIENDA--IDLSRQFECTLRRRLKSVTESVLIHG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P + + +F C+ + FD R + Sbjct: 100 IAPSALAVGTAP----AEALLRFMEYAGDCVFLAFHAPFDQRMLGRALKDELGYRLRHPF 155 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 + +L ++ D D + Sbjct: 156 LDVADLAPMLFPEALVHPGGLDQWIQYFGLDMSRRHH 192 >gi|330874768|gb|EGH08917.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 237 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 25/194 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G ++ D+ V ++ + E + P AV I G+ Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P A+ G E +F I+G++ FD + + + ++ + Sbjct: 101 PS-AIAAGSEPVEALLDFMEFVGESP--ILGFHAP-FDQHMLARALKESLDYRLQHAFFD 156 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L L D G+ H+A AD T Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199 Query: 185 LALVWLIREKKPKL 198 L ++ + Sbjct: 200 AELALILFSHARRQ 213 >gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 239 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 50/195 (25%), Gaps = 25/195 (12%) Query: 22 PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 + V V F D EA+ + GIT + V AE + Sbjct: 13 IIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKVHGITNEFLQDKPV-FAEVADE 68 Query: 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141 +F I +N FD + F + S D L V R +Y Sbjct: 69 FIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT--AEMCSVTDSLAVARKMYPG 123 Query: 142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPKLF 199 L L GI++ H A D + ++ + L Sbjct: 124 --------------KRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 169 Query: 200 EYLYDYRNKNQLRKL 214 + L Sbjct: 170 GEEDATATHENVADL 184 >gi|153821463|ref|ZP_01974130.1| exonuclease family [Vibrio cholerae B33] gi|229509131|ref|ZP_04398618.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Vibrio cholerae B33] gi|229608803|ref|YP_002879451.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio cholerae MJ-1236] gi|126521063|gb|EAZ78286.1| exonuclease family [Vibrio cholerae B33] gi|229353888|gb|EEO18823.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Vibrio cholerae B33] gi|229371458|gb|ACQ61881.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio cholerae MJ-1236] Length = 301 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + V+V + +V +TG Sbjct: 53 VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176 + + + + Y G + F L ++AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|77543206|gb|ABA87018.1| hypothetical protein [Vibrio cholerae] gi|259156499|gb|ACV96443.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Mex1] Length = 301 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62 V+ D ET G + + V+V ++I S D P PE +TG Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDDMVRGQRIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176 + + + + Y G + F L ++AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFEVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855] Length = 538 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 44/171 (25%), Gaps = 27/171 (15%) Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 + V+V R ++ + +TGIT E Sbjct: 2 EIGAVKV-RDGSVVDRFQQL---VNPQQSVPGRITKMTGITTGMVFEAP-PADEVLPDYR 56 Query: 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143 F I+ +N+ FD + R ++ L +R P Sbjct: 57 AFLGDG---ILVAHNVSFDGSFLDAELQRMGDETLPNE---------TLCTVRLARRLLP 104 Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194 S L LA I+ H A D AT ++ + Sbjct: 105 GLD----------SKGLSRLAQFYDIDVEGRHRALGDAEATSVVLRRFVSQ 145 >gi|212639167|ref|YP_002315687.1| hypothetical protein Aflv_1334 [Anoxybacillus flavithermus WK1] gi|212560647|gb|ACJ33702.1| 3'-5' exonuclease related protein [Anoxybacillus flavithermus WK1] Length = 240 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFIT 61 F++ D ET G D A ++ +C V +T Sbjct: 57 TFILLDTETTGFSPQRGDEIFSLAALKTKN-----GEPLDLYCSNFRPKRRIPEHVVTLT 111 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++E E IH S N I+ +I+ D + RN+ + + Sbjct: 112 GITNDDVAYAPLLEEE----IHHILSFLNHSILLGYHIQHDVAFLNEFLSRNYRTVLQQT 167 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + + L D + ++ H AK DV Sbjct: 168 --------------------TIEMRKIMECIYHESFPTLDDALSFYHLTPIDRHTAKGDV 207 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 + + + + +L Sbjct: 208 MSLFEMWKRVFIELQQLQIDTLH 230 >gi|207743707|ref|YP_002260099.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609] gi|206595106|emb|CAQ62033.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609] Length = 219 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 N+ V D E G DR + A V D + + V +D+ L +A Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWNKGT 87 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K EA+ + F + + N+I D + + Sbjct: 88 HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147 Query: 116 DSYRW 120 + Sbjct: 148 YFHYR 152 >gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 215 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 63/211 (29%), Gaps = 26/211 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207 A D T L I + +L + Sbjct: 183 ALYDTERTAVLFCEIVNRWKRLGGWPLPLST 213 >gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703] Length = 232 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++++ + + T F P + +PEA+ G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 192 HSALYDTMQTAKLFCELVNR 211 >gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 215 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++++ + + T F P + +PEA+ G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 181 HSALYDTMQTAKLFCELVNR 200 >gi|90408436|ref|ZP_01216597.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] gi|90310470|gb|EAS38594.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] Length = 237 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 19/194 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F++ D+ET G + V + S E + +D + E I I Sbjct: 49 SFLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIY--INNDKKINHETAVINHI 106 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 PQ GV + I+ I+ + + + ++ F Sbjct: 107 VPQMLR-QGVSLHDA---INALLIKAKGKILVVHGKVIEQCFLDFYMHQYF--------- 153 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++ A +L + + AH+A D + Sbjct: 154 ----ALPKIPLLWIDTLLIEKWRAVQKGMTLAQDNRLGSARIRYNLPQYTAHNALIDSIS 209 Query: 184 TLALVWLIREKKPK 197 T L+ + Sbjct: 210 TAELLLAQIAHIYQ 223 >gi|28899651|ref|NP_799256.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|260361502|ref|ZP_05774549.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260879140|ref|ZP_05891495.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260895473|ref|ZP_05903969.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|260903319|ref|ZP_05911714.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|28807903|dbj|BAC61140.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308088058|gb|EFO37753.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308091615|gb|EFO41310.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308109530|gb|EFO47070.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308112864|gb|EFO50404.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|328472225|gb|EGF43095.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 209 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 20/194 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET D A ++ +I +++ F + D +V I I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIID--NRILTSQPFEVRLRAPQSLDSGSVKIHKIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q G+ E E ++ F N ++GY+ + + + Sbjct: 88 HQDLAD-GISEKEALLKLLAFI--GNRPLVGYHIRYDKKILDLACQRQLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189 Query: 185 LALVWLIREKKPKL 198 + + + Sbjct: 190 ALVFVRLTKGDLPN 203 >gi|261250461|ref|ZP_05943036.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260939030|gb|EEX95017.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 210 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 20/193 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET D A ++ F + D +V I I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHHIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q G+ E + ++ +F N ++GY+ + + + Sbjct: 88 HQDLAD-GIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRKQLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + N HDA D A Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLDAICKHLDLPLQNKHDALQDAIAA 189 Query: 185 LALVWLIREKKPK 197 + + + Sbjct: 190 ALIFVRLTKGDLP 202 >gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 215 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAVLFCEIVNR 200 >gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi] gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAVLFCEIVNR 200 >gi|297181362|gb|ADI17552.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [uncultured alpha proteobacterium HF0130_06E21] Length = 309 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 71/230 (30%), Gaps = 53/230 (23%) Query: 1 MTNHF-----------VIYDYETFGRDVALDRPAQFAGVRVD---RQWEKI-----ESTE 41 M F ++ D ET G D Q A + D + E+ E Sbjct: 34 MPEKFNEAPVGDVRRALVVDVETTGLSQETDDVMQLAMLPFDYEVETGRILTVYKDEAFE 93 Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 EA ITGIT ++AE + + N ++ +N +F Sbjct: 94 ALR---EPAAPISEEASIITGITADMVAGT-TIDAEAVAGMVE-----NADLVIAHNAKF 144 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + + + + D ++ +R Y+ KL Sbjct: 145 DRPMAEKNWDCFVNKPWACT-------LDGVNWLRQGYSAG----------------KLD 181 Query: 162 DLALANGIEHVNAHDAKADVYATLA-LVWLIREKKPKLFEYLYDYRNKNQ 210 L + G + H A AD A LA L + + ++ + + K + Sbjct: 182 YLGMQFGW-FYDGHQALADCEACLALLAQTLPKADVRVMAAVRESALKKE 230 >gi|297566007|ref|YP_003684979.1| exonuclease RNase T and DNA polymerase III [Meiothermus silvanus DSM 9946] gi|296850456|gb|ADH63471.1| Exonuclease RNase T and DNA polymerase III [Meiothermus silvanus DSM 9946] Length = 203 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 48/184 (26%), Gaps = 15/184 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D+ V + + + +P E + I Sbjct: 19 YWALDLETSGLKP-QDQILSVGMVPIRKGVIRYGEHFYSLVRPHRFDTLSLEGLRAHQIR 77 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + + R +HQ ++ ++ + D + R + R Sbjct: 78 PFELREAP-PLCQVLREVHQRLKE--GVLLVHHAL-VDVAFLRRAYARCDLVWPE----- 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + ++ + P L + AH A D AT Sbjct: 129 -PQVVDTVKLLHKLGQRRALLEPHPETPPEN----LAKARAFLDLPPYTAHHALTDALAT 183 Query: 185 LALV 188 + Sbjct: 184 AEIF 187 >gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71] gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71] Length = 210 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 64/216 (29%), Gaps = 31/216 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52 M + F VI D ET G + D + A VR+D + + T F P + Sbjct: 3 MKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEGAN 62 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106 + A+ TGI P R+ + E E + Q I+ +N FD + Sbjct: 63 IEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAGFL 122 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + L + + + Sbjct: 123 NAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSCYE-----------------AG 165 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 ++ AH A D T L I KL ++ Sbjct: 166 IPFDNEQAHSAAYDAERTAELFCGIVNTWQKLGGWM 201 >gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236] gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236] Length = 226 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++++ + + T F P + +PEA+ G Sbjct: 31 VVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 192 HSALYDTMQTAKLFCELVNR 211 >gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8] gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8] Length = 1227 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 22/219 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63 +V+ D E D R A+ ++V R ++ P D + E + + G+ Sbjct: 827 YVMVDLEATSTDPRHCRVAEIGALKV-RDGTVVDRFSELVQLPEDLTADERETLRTVCGL 885 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + EA+ F ++ +N R+D R + + Sbjct: 886 DPASDFDEARPEADVWADFCDF--ADTAPLVAHNGQRYDFRVLRR---------LANTHE 934 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D++ A + PD ++ + + AH A AD Sbjct: 935 ADARWATTYDLLPAAHELFPDLRRYDAAHLRE---------TLLDDDADTAHRALADCED 985 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 ++ ++ ++ + L L + ++ P Sbjct: 986 QQRILARMQAERARQRRRLAHEPLLPLLVAALTYESPAP 1024 >gi|226364575|ref|YP_002782357.1| DNA polymerase III subunit epsilon [Rhodococcus opacus B4] gi|226243064|dbj|BAH53412.1| putative exonuclease [Rhodococcus opacus B4] Length = 247 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 29/128 (22%), Gaps = 7/128 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G D R VD E + A + GI+ Sbjct: 9 ICAFDLETTGPDPTDARIVSACIAVVDAH-----HFESRTWLLDPEVPIPQGASDVHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + A G A R I + + N +D R Sbjct: 64 TEYARAHGQDYATGYREIRDALYDAWTRDHAVVAFNASYDLTVMHTEGLRLGLPELVHGI 123 Query: 123 DNGNSRWD 130 D Sbjct: 124 VVDPYVID 131 >gi|197124141|ref|YP_002136092.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] gi|196173990|gb|ACG74963.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] Length = 200 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 12/186 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D + V ++ +P P +V + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 AE + + + ++ ++ + R G Sbjct: 76 TRGAPA-LAEVLPELERRLR--DAVLLVHHAPIELGFLKRAFRAAGLRWP-------GPP 125 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D + ++ + + + ++P L G+ AHDA D AT L Sbjct: 126 VVDTVKLL--LRLDARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAEL 183 Query: 188 VWLIRE 193 ++RE Sbjct: 184 FLVLRE 189 >gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp. 1501(2011)] Length = 201 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 19/191 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ +V D E G + D A + ++ + C+P +P E + I Sbjct: 30 SDKWVAIDCEMTGLNPKKDHLLSIAAIHINGSNIQSGQGLHLICRPP--VMPTKETIVIH 87 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ P G+ + R+ F N I+GY F + S Sbjct: 88 GLRPIDVEN-GLSYEQMLERLLPFID--NRPIVGY----------CPQLDMGFLNKISKS 134 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++D+ ++ + +L +A + + AHDA D Sbjct: 135 YMGTALPNPIIDI----RDLYNRYSGNRTQGISHQAQQLSSIATQLQLPELAAHDAYNDA 190 Query: 182 YATLALVWLIR 192 T + +R Sbjct: 191 LMTAMVFLHLR 201 >gi|315226729|ref|ZP_07868517.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|315120861|gb|EFT83993.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 292 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 17/192 (8%) Query: 1 MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAV 58 + + +++ +D ET G D A + V D + + +P A Sbjct: 58 LKDSYLLGFDTETTGACYGTDAIASASLVLRDPAAGFPGDRISQWI--INPGVPMNPFAS 115 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + G T G +AE +I + + + N FD R Sbjct: 116 QVNGFTDAYLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDR 175 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAH 175 + + ++D + + S L D G+ H + H Sbjct: 176 NLNQQTQDLGHELLIVDPLVLDRSVSH----------RKGKRTLTDTTYYYGVQPHGSFH 225 Query: 176 DAKADVYATLAL 187 DA AD A + L Sbjct: 226 DATADTIAAVDL 237 >gi|294787077|ref|ZP_06752331.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens F0305] gi|294485910|gb|EFG33544.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens F0305] Length = 244 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 17/192 (8%) Query: 1 MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAV 58 + + +++ +D ET G D A + V D + + +P A Sbjct: 10 LKDSYLLGFDTETTGACYGTDAIASASLVLRDPAAGFPGDRISQWI--INPGVPMNPFAS 67 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + G T G +AE +I + + + N FD R Sbjct: 68 QVNGFTDAYLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDR 127 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAH 175 + + ++D + + S L D G+ H + H Sbjct: 128 NLNQQTQDLGHELLIVDPLVLDRSVSH----------RKGKRTLTDTTYYYGVQPHGSFH 177 Query: 176 DAKADVYATLAL 187 DA AD A + L Sbjct: 178 DATADTIAAVDL 189 >gi|119471955|ref|ZP_01614240.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7] gi|119445213|gb|EAW26504.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7] Length = 234 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 25/200 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58 FV D+ET G + D V + +CK + ++ P ++ Sbjct: 45 FVALDFETTGLNSKADDIVSVGLVPF--------TLARIYCKQSKHWVVQPRRNLSESSI 96 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT +F I + +I + + + + + Sbjct: 97 VIHGITHNDVDNAP----DFDNIIAPLLDALRSKVIVVHYAAIERGFFNSALLLRLKEHI 152 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + + + + G+ + S +L D + H A Sbjct: 153 EFMVVDTME-------LERRALKAKQGLIGQIFNTKLGSLRLNDCRKRYSLPSYEGHHAL 205 Query: 179 ADVYATLALVWLIREKKPKL 198 D AT L+ Sbjct: 206 TDALATAELLQAQLRHHYTE 225 >gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 240 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 23/195 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + DR A + +R + + P A + G+T + Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73 Query: 68 ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +GV E + I + ++G+N FD R+ + R Sbjct: 74 LQANGVDPRVGLEEVAGIIEETMRR-GVPVVGFNV-TFDFAILEAELARHNLPTLR--QR 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVY 182 S ++D + L + A + + H+A+ADV Sbjct: 130 LEGSVGPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVS 180 Query: 183 ATLALVWLIREKKPK 197 ATL L+ + E+ P+ Sbjct: 181 ATLDLLGAMSERFPE 195 >gi|258620661|ref|ZP_05715698.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573] gi|262172598|ref|ZP_06040276.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|258587176|gb|EEW11888.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573] gi|261893674|gb|EEY39660.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 209 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 51/196 (26%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63 +V D ET D A ++ EV C P D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQS---LDSGSVRIHKI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q G+ E E ++ F N ++GY+ + + Sbjct: 87 RHQDLQD-GLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ + L + + + HDA D A Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIA 188 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 189 AALVFVRLTKGDLPQF 204 >gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 289 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 13/121 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G D+ + A D + E + + DP+A+ + GIT Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGEVL-----LCTRLRPTVGIDPQAMGVHGITE 158 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + + S ++ +N+ + F D W + Sbjct: 159 AELSNEP-TWTQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213 Query: 126 N 126 Sbjct: 214 C 214 >gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164] gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164] Length = 455 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V I GIT Sbjct: 230 LILDTETTGFYFQDGDRIIEVGAIEM-VNRKLTGSSIHIYINPEK---PVGDSVDIHGIT 285 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + AE + + + I +N FD + F R + Sbjct: 286 DEFLQDKPR-YAEIAEVLFNYLKGAE---IIAHNASFDMNFLDMEFKRAGFP 333 >gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B] gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B] Length = 192 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 26/199 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET G + Q +G + +D + + F P + EA+ I Sbjct: 2 KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHPQCEIEEEALRICN 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ ++ E + S ++GYNN FD+++ + Sbjct: 59 VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + NG+ + + +I + T FK + +A A GI+ +A Sbjct: 111 ----AFFVQNGDHYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166 Query: 175 --HDAKADVYATLALVWLI 191 HDA D+ T + I Sbjct: 167 KLHDASYDIQLTKEIYNRI 185 >gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] Length = 327 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 62/196 (31%), Gaps = 27/196 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M+ F D+ET + P RV R E +E PA DP + I Sbjct: 1 MSLDFTAIDFET--ANGFRGSPCAVGLSRV-RGGEIVEEAFWLMRPPAGHDRFDPRNIAI 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+TPQ+ + +F I+ +N FD R+ + Sbjct: 58 HGVTPQQVASQPR-FDRVFDEVQRFI---GQDILVAHNAAFDTGVMRSAQEVS------- 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 R+D + S+ L +A A G+ +N HDA D Sbjct: 107 --AKSGPRYDYACTVMLARRSY-----------SLPSYSLPFVAEAAGVPLINHHDAVED 153 Query: 181 VYATLALVWLIREKKP 196 A ++ I + Sbjct: 154 ARACAGIMIDIVARHD 169 >gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] Length = 226 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 58/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F +P + PEA+ G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L L GI A Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + + Sbjct: 192 HSALYDTMQTAKLFCELVNR 211 >gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 205 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P PEA+ G Sbjct: 10 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 69 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 70 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 129 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 130 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 172 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 173 ALYDTERTAVLFCEIVNR 190 >gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 215 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + I+ +N FD + R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D G T LA + AH Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAVLFCEIVNR 200 >gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 239 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 50/195 (25%), Gaps = 25/195 (12%) Query: 22 PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 + V V F + EA+ + GIT + V AE + Sbjct: 13 IIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKVHGITNEFLQDKPV-FAEVADE 68 Query: 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141 +F I +N FD + F + S D L V R +Y Sbjct: 69 FIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT--AEMCSVTDSLAVARKMYPG 123 Query: 142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPKLF 199 L L GI++ H A D + ++ + L Sbjct: 124 --------------KRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 169 Query: 200 EYLYDYRNKNQLRKL 214 + L Sbjct: 170 GEEDATATHENVADL 184 >gi|170050189|ref|XP_001859612.1| oligoribonuclease [Culex quinquefasciatus] gi|167871717|gb|EDS35100.1| oligoribonuclease [Culex quinquefasciatus] Length = 214 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 25/135 (18%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60 ++ V D E G +V DR + A + ++ + +E D + A + Sbjct: 35 QHNLVWIDLEMTGLNVETDRIIEIACIVTNKNLDVLER--------GPDIVIHEPAQIME 86 Query: 61 ------------TGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYY 105 TG+T Q V AE +++ F C + N+I D + Sbjct: 87 AMNEWCKVNHAKTGLT-QAVADSKVTLAEAEQQVLDFVKRHCPEKACPLAGNSIYMDRMF 145 Query: 106 SRNIFYRNFYDSYRW 120 R + Sbjct: 146 LNRYMPRLNDYLHYR 160 >gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13] gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13] Length = 192 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 26/199 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET G + Q +G + +D + + F P + EA+ I Sbjct: 2 KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHPQCEIEEEALRICN 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ ++ E + S ++GYNN FD+++ + Sbjct: 59 VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + NG++ + + +I + T FK + +A A GI+ +A Sbjct: 111 ----AFFVQNGDNYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166 Query: 175 --HDAKADVYATLALVWLI 191 HDA D+ T + I Sbjct: 167 KLHDASYDIQLTKKIYNRI 185 >gi|77164160|ref|YP_342685.1| exonuclease [Nitrosococcus oceani ATCC 19707] gi|254435603|ref|ZP_05049110.1| exonuclease superfamily [Nitrosococcus oceani AFC27] gi|76882474|gb|ABA57155.1| Exonuclease [Nitrosococcus oceani ATCC 19707] gi|207088714|gb|EDZ65986.1| exonuclease superfamily [Nitrosococcus oceani AFC27] Length = 205 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 17/208 (8%) Query: 1 MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + + +++ D ET G V +I + F +P EA Sbjct: 12 LPDDYIVLDTETTGLPDENGLPDIVTLGITVVSN--REIAESVEFKTRPQ--KRISEEAQ 67 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT ++A +++ ++I ++ +I +N FD + R+ Sbjct: 68 SIHGITNKQAAAFDSFDSQ-WQQISEYLKHQ---LIVIHNASFDWPILLDHVLRHGL--- 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 G + A P + PS D + ++DL ++ H AK Sbjct: 121 AMPEIQGVFCSQKAAIPWAQAMDLPCSHRGPSLDTLTKALGVEDLR----VKEDGLHGAK 176 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206 D +V +I + + + ++R Sbjct: 177 IDSRQLAQVVQVISRNENMEWVLIVNHR 204 >gi|190572046|ref|YP_001966288.1| unknown [Pseudomonas sp. CT14] gi|75707029|gb|ABA25992.1| unknown [Pseudomonas sp. CT14] Length = 197 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 27/192 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D + + D + EA I IT Sbjct: 16 LDTETTGVG-DGDEVCEITIL--DASGTPL-----LNTLIRPTQPIPAEATGIHRITNDM 67 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 E + + S + N FD+ R+ Sbjct: 68 VATAPA-WPEIAEQYASIVS---GRTVVAYNASFDERLLSQTHQRHGL------------ 111 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDD---GATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L A+ ++ +W KL + A A G+ AH + AD T Sbjct: 112 VAPALATACAMLLYAEWHGEWVEGRYGAWQWRWIKLIEAARACGVLEDGAHRSLADARMT 171 Query: 185 LALVWLIREKKP 196 L ++ + ++ Sbjct: 172 LGVLRYLHKRTN 183 >gi|241589662|ref|YP_002979687.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] gi|240868374|gb|ACS66033.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] Length = 330 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 27/186 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D ET G A D + A + D + + T + + P A I GIT Sbjct: 161 VYLDTETTGLSAASGDELLELAVI--DDAGKVLFETLIRPNHLTEW----PAAQVIHGIT 214 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + + + +I N FD + Sbjct: 215 PADVAGAP-SLSAVLQGLAAAIEGAEALVIF--NADFDLGF---------LPEPLRPLAK 262 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYA 183 +R A+ AF+ +W LQ A G AH A+AD +A Sbjct: 263 QKARC-------AMQAFALWCGEWDDYRYSYRWQNLQQAAAIAGHVWEGRAHRARADAFA 315 Query: 184 TLALVW 189 + Sbjct: 316 VRTVWH 321 >gi|17545661|ref|NP_519063.1| oligoribonuclease [Ralstonia solanacearum GMI1000] gi|21263804|sp|Q8Y0V1|ORN_RALSO RecName: Full=Oligoribonuclease gi|17427954|emb|CAD14644.1| probable oligoribonuclease protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 N+ V D E G DR + A V D + + V D+ L +A Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGT 87 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K EA+ + F + + N+I D + + Sbjct: 88 HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147 Query: 116 DSYRW 120 + Sbjct: 148 YFHYR 152 >gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583] gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22] gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200] gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1] gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5] gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96] gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1] gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6] gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712] gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613] gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1] gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11] gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248] gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134] gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512] gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102] gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516] gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583] gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22] gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200] gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1] gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5] gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96] gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1] gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6] gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712] gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613] gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1] gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Enterococcus sp. 7L76] gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11] gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134] gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248] gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512] gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102] gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516] gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137] gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027] gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031] gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312] gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645] gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B] gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A] gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family protein [Enterococcus faecalis 62] gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467] Length = 177 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F +D+ET A V+V ++ + I GI Sbjct: 2 NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E ++I F PN ++ +N D Y Sbjct: 56 HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L ++ + KL + I N HDA D A Sbjct: 108 N----YLSLCTVKTSRKLF----------PEFPNHKLNTVCENLNITLNNHHDALEDSRA 153 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 154 CAEILLQQEQR 164 >gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51] gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51] Length = 236 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + D+ V ++ I+ + F L +V I G+ P Sbjct: 42 VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLQRPLLKTNASVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AL G AE + F ++ ++ ++ + + + R +S + + Sbjct: 100 S-ALAAGCEPAEALLDLLDFI--GDSPVLAFH-----APFDQRMLARALKESLGYRLQSP 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L M + L D G++ H A AD T Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198 Query: 186 ALVWLIREKKPKL 198 LV ++ + + Sbjct: 199 ELVLILFSQARRQ 211 >gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603] gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603] Length = 209 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 51/196 (26%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63 +V D ET D A ++ EV C P D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQS---LDSGSVRIHKI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q G+ E E ++ F N ++GY+ + + Sbjct: 87 RHQDLQD-GLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ + L + + + HDA D A Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIA 188 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 189 AALVFVRLTKGDLPQF 204 >gi|150401941|ref|YP_001329235.1| exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] gi|150032971|gb|ABR65084.1| Exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] Length = 189 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 14/189 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G + + AQ + + D I+ E + K +A + G++ Sbjct: 3 VFLDTETTGLEP--GQIAQISYIISDDDLN-IQKAENIYFKVNSMET---KAQSVHGLSI 56 Query: 66 Q--KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDSYRWS 121 + + L DG + + +I I+ +N+ FD + + F R YD ++ Sbjct: 57 EKLELLSDGKSFTDHANQILDDIDQK---ILICHNVPFDYKFLNSEFVRCGIEYDPKKFC 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 N + + P + S L++ G HD++ D Sbjct: 114 TMNHYTNLCGIPNPYRPGYKWPRLEETLDFLSIEKSEVLKNALNLFGNTTG-FHDSRFDS 172 Query: 182 YATLALVWL 190 + Sbjct: 173 MGLFMIYKE 181 >gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] Length = 178 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 58/205 (28%), Gaps = 31/205 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + D A V V + ++ + I GI Sbjct: 2 NFVAMDFET--ANGQRDSACSIALVVVRND-QIVDQFYTL---IKPETYFSSRNSQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + I FF+ ++ +N FD R+ + Sbjct: 56 YEDDVAQAPK-FDQVWPHIAPFFT--PQKLVVAHNATFDIGVLRSTLQHYDIPEPHY--- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L R +Y + KL L I N H+A AD Sbjct: 110 ---LALDTLTTSRRLY-------------PQFKNHKLNTLCTNLEIPLENHHNALADS-- 151 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208 +A ++ ++ + K Sbjct: 152 -IACAKILIKEAQEFGTDPLKQVTK 175 >gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC 8503] gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19] gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3] gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC 8503] gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19] gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3] Length = 192 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 26/199 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET G + Q +G + +D + + F P + EA+ I Sbjct: 2 KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHPQCEIEEEALRICN 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ ++ E + S ++GYNN FD+++ + Sbjct: 59 VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + NG++ + + +I + T FK + +A A GI+ +A Sbjct: 111 ----AFFVQNGDNYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166 Query: 175 --HDAKADVYATLALVWLI 191 HDA D+ T + I Sbjct: 167 KLHDASYDIQLTKEIYNRI 185 >gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] Length = 459 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337 >gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii AYE] gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU] gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056] gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058] gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii AYE] gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 1656-2] gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii TCDC-AB0715] Length = 459 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337 >gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] Length = 834 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 29/203 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D E A + Q V V + + + +TG Sbjct: 21 PKYAVIDLEATSAGTAA-KIIQVGIVIV-EGGKITNTYQT---DVNPHEDLSDHIKLLTG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ Q+ ++ + I CI +N++FD + ++ Sbjct: 76 ISDQQLASAPE-FSQIAGTIFDLIKD---CIFVAHNVKFDANLLAEALFFEGFE------ 125 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R +D + F P + + L L+ +E +AH A AD Sbjct: 126 ----LRTPRVDTVELAQVFFPHLEK----------YNLTYLSTELNLELSDAHTAIADAM 171 Query: 183 ATLALVWLIREKKPKLFEYLYDY 205 AT L+ ++++K L + Y Sbjct: 172 ATANLLLVLQDKIKSLPKESLAY 194 >gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900] Length = 459 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337 >gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301] Length = 214 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 28/192 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D ET G DR V+++ + + + P D P EA + Sbjct: 13 KKRVIVVDTETTGLLP-YDRIVTIGAVKIEGD-DFLHQSLHLIFDPRKDSHPQAEA--VH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + ++ + I ++F + I +N FD Y + F + D Sbjct: 69 GYDNWMTRYQDL-FSDLAAPIRKWFDWADE--IVAHNADFDMRYVQREFRKAEVDML--- 122 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180 + + ++ R I++ S KL D G+ H A D Sbjct: 123 ---PHPVFCTMERSREIWSGQ--------------SAKLDDCLARIGLSRIGKRHGALED 165 Query: 181 VYATLALVWLIR 192 Y T L R Sbjct: 166 AYLTAGLYLHQR 177 >gi|149186517|ref|ZP_01864829.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] gi|148829744|gb|EDL48183.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] Length = 297 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 12/152 (7%) Query: 7 IYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 I D ET G D + A + V E I DP+ +TG+ Sbjct: 51 IVDTETTGLSAETDVIIELAIMLCFVGDNGEVIGHFGPVSWLQDPGQELDPKITLVTGLG 110 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + +R + +I +N +FD + R + D +W Sbjct: 111 AQHLKNQ-KINDTVARGLLD-----RADLIAAHNAKFDAGFIE----RRYPDLAGKAWAC 160 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156 S D L + + S D Sbjct: 161 SCSEIDWLKLGYEGRSQSALLAHAGWFSDAHR 192 >gi|145298879|ref|YP_001141720.1| DNA polymerase III subunit epsilon [Aeromonas salmonicida subsp. salmonicida A449] gi|142851651|gb|ABO89972.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 208 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 20/199 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D+ET D A VR+ + + ++V I G Sbjct: 29 DELIALDFETTSLDPARAEIVSIGAVRIKGNRILTGEALSLRVQAPASL--NAQSVVIHG 86 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q G+ R++ F ++GY+ + + + Sbjct: 87 LRHQDLQ-QGMRLEAALRQLLAFI--GPRELVGYHIAYDLRILNLACQKQWGLTLAQQGI 143 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L + D L + + + HDA +D Sbjct: 144 EVSRLYHDHL---------------YRRYPDAVIDLHLAAIRQHLNLPSLPVHDALSDAI 188 Query: 183 ATLALVWLIREKKPKLFEY 201 + + + P + Sbjct: 189 TAALIYLRLTQGGPLAYPK 207 >gi|145295430|ref|YP_001138251.1| hypothetical protein cgR_1367 [Corynebacterium glutamicum R] gi|140845350|dbj|BAF54349.1| hypothetical protein [Corynebacterium glutamicum R] Length = 197 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 51/196 (26%), Gaps = 20/196 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62 + D ET G + V + + I+ + + + I Sbjct: 14 KLLAVDVETTGLKPHRHQIVSIGWVPI--NGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQ 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + G+ + ++ Q + + + + ++F Sbjct: 72 LTDDEIA-AGIDIEDALGQLLQALQ---GRAMLAHFSPIERDFISAACLKHF-------- 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L+D +P +D +L + G+ + + H A D Sbjct: 120 -GTLLDVPLVDTFAMERRHMERMSTYPRGED----LRLARIRQRYGLPNYSNHQALTDAL 174 Query: 183 ATLALVWLIREKKPKL 198 A + + Sbjct: 175 ACAEVYLVQITHLRAN 190 >gi|157736758|ref|YP_001489441.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315635934|ref|ZP_07891196.1| exonuclease [Arcobacter butzleri JV22] gi|157698612|gb|ABV66772.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315479913|gb|EFU70584.1| exonuclease [Arcobacter butzleri JV22] Length = 202 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 20/194 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +V +D ET G + D V + V F KP EA+ + Sbjct: 29 KDEYVCFDCETTGLNPKKDDIISIGAVIIKDNTIISSKKFVKFIKPK--TKLQAEAIKVH 86 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I ++ +F N ++GY ++ + + + Sbjct: 87 HIRECDLNNANDIDL-VIEEFLEFI--GNRTLVGYFLEFDISMINKYLKPKLGITLPNKT 143 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D + G + + I + HDA D Sbjct: 144 LEVSEIYHD---------------YKIEIIPQGHIDLRFNSIMEELEIPSLGKHDAFNDA 188 Query: 182 YATLALVWLIREKK 195 T + ++ Sbjct: 189 LMTAMIFIKLKNIA 202 >gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] Length = 187 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 29/189 (15%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F+ D+ET G + L DR + A + D++ + + E Sbjct: 8 FLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTL---VNPNIFIPGEVSKFHK 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q +E R ++ II +N++ D + + S Sbjct: 65 LNNQDISNAP-SLSEVFPRFKEYIDDS---IIVSHNVKMDLRFLDIAAKESGMFSIDN-- 118 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D ++ + L+ L+ + H A D Sbjct: 119 ------------------YYIDTLEISKYYFDKGPYNLEFLSKKFNLGIKQFHRAWDDAL 160 Query: 183 ATLALVWLI 191 +T L Sbjct: 161 STAKLFQKY 169 >gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria KACC 11862] Length = 177 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 31/205 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V V ++ + D I GI Sbjct: 2 NFVAMDFET--ASAQRHSAVSMALVVVRDNI-LVDEFYTL---IKPESYFDARNTKIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E +I QF++ ++ +N FD+ R Sbjct: 56 TEADVVDAPK-FPEVWEQIKQFYTANQ--LVIAHNAPFDNGVLRETLGHYGI-------- 104 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD +R P + KL +A A I+ + H+A D Sbjct: 105 -SAPHYLSLDTVRTSRKLYPQL----------PNHKLNTVADALQIDLKHHHNALDD--- 150 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208 T+A ++ + + K Sbjct: 151 TVAAARILVTQAEQFGVDPLKQLVK 175 >gi|300692079|ref|YP_003753074.1| oligoribonuclease [Ralstonia solanacearum PSI07] gi|299079139|emb|CBJ51807.1| oligoribonuclease [Ralstonia solanacearum PSI07] Length = 219 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 N+ V D E G DR + A V D + + V D+ L +A Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGT 87 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K EA+ + F + + N+I D + + Sbjct: 88 HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147 Query: 116 DSYRW 120 + Sbjct: 148 YFHYR 152 >gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] Length = 220 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-VDGKIVNPMSNL---VRPDRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + + +N FD W Sbjct: 57 MVADKPWIE-DIIPQYY------GSDWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ P + +Q A + H A D Y T Sbjct: 97 -----ICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHH------HRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMQTSGW-----------TAEQMVDITGRPALLTT--FTFGKYRGKPVSEVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA polymerase III subunit epsilon [Candidatus Sulcia muelleri SMDSEM] gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA polymerase III, epsilon subunit (DnaQ) [Candidatus Sulcia muelleri SMDSEM] Length = 1406 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 77/249 (30%), Gaps = 23/249 (9%) Query: 5 FVIYDYETFGRDVALDRPA-------QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++I+D ET G + P + + D + I + + KP +P + Sbjct: 2 YIIFDTETTGLPKNYNAPIINWPRLVRLSWCLYDENLKLI-ELKDYIIKPEGFEIPF-NS 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 I GI+ ++AL G + + + N+ + +NI FD F R Sbjct: 60 TKIHGISTEEALEKGYKRNFVLEKFN--IRIKNSKFLIGHNIYFDLKVLCAEFIRLKKIH 117 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 Y + + S + L +L + AHD+ Sbjct: 118 YLYKKK-----------IIDTKEKSINFCAIKIGKGKLKWPTLTELYKKLFNDTFIAHDS 166 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 K+DV AT + + + + + K I++ + F Sbjct: 167 KSDVLATSKCFFELLRI-GIISLKNVNKKLLKINIKKINLSKIQNFNFKKLNFEKKLFKK 225 Query: 238 ALIAPVAWH 246 + + H Sbjct: 226 KYFSHIHNH 234 >gi|154343419|ref|XP_001567655.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064987|emb|CAM43098.1| exonuclease-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 292 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 54/230 (23%), Gaps = 46/230 (20%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--------RVDRQW----------------------- 34 V+ D ET G D + V R Sbjct: 53 VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112 Query: 35 -EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI 93 + + +P+ A + GIT +K + + + ++ Sbjct: 113 WTRGGRVFHRYVRPSHPRRITAAATAVHGITWEKVQHC-APWPVVASELVAYMTLIRADA 171 Query: 94 IGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS-------PDGI 146 + +++ + + ++R+ + R Y Sbjct: 172 LFTKSVQVEAAQHGGHSAVHL-PPLVAHNALFDARFLAHHLQRCGYQIFWHPQYPLTCTR 230 Query: 147 QWPSRDDGATSFKLQDLALANGIE-----HVNAHDAKADVYATLALVWLI 191 QW + L L I+ N H A D T L + Sbjct: 231 QWAQVAYPHLANNLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRM 280 >gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163] Length = 219 Score = 66.8 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V ++D + + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLPEALTFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N ++ +N FD + R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + A + AH Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACH-----------------AAGMAFDSAQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTLQTADLFCELVNR 200 >gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913] gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913] Length = 224 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 72/225 (32%), Gaps = 30/225 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D I+ T F +P + + A+ G Sbjct: 19 VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFNG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P ALR V E E + I + ++ +N FD + RN Sbjct: 79 IEPFSALRGAVPEEEAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERN--- 135 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + + + + +D + L A GIE N A Sbjct: 136 NIKRTPFHPFVSFDTTSLA----------------GLALGQTVLAKACRAAGIEFDNKQA 179 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 H A D T L LI + +L + Q + Q+ Sbjct: 180 HSALYDTERTAELYCLIVNRWQQLGGWPLAIDETQQNEDEVSNQD 224 >gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM 17393] gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM 17393] Length = 164 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V R E +++ +P +Y + Sbjct: 1 MENFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDNYYSLI-RPEPEY-YSYWNTRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T V + I + +N FD+ + Sbjct: 56 GLTLADTAEAPV-FPVVWQEIAPLIE---GLPLVAHNKGFDESCLKA------------- 98 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + Y F R G S++L +A G E H A AD Sbjct: 99 ------VFKTYCLDYPDYEFHCTLSTARRRIKGLPSYQLHTVAAYVGYELEQHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii SDF] gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii] Length = 459 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337 >gi|332076082|gb|EGI86548.1| exonuclease family protein [Streptococcus pneumoniae GA41301] Length = 140 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 9/114 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V+ D E + + Q V + E ++ D +TG Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +T Q+ + ++ +R+I I +N++FD + Y+ Sbjct: 61 LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE 110 >gi|300934269|ref|ZP_07149525.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM 45100] Length = 225 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 19/185 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63 + D ET G D DR + VD +I+ + + + E+ I G+ Sbjct: 43 LLAVDVETTGLDSRKDRLLSIGWIPVD--GHEIDLSGAGYGVIEQETHETVGESATIHGL 100 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T R+G E R+ Q + + + + + + +F Sbjct: 101 TDDHVHREGEAAPEVLARLLQALR---GRAMLVHYKKVESTFISDACQDHF--------- 148 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D + F DG P DD +L + + + H+A D A Sbjct: 149 GTGLKAQYVDTLELARRFIEDGGGHPKGDD----LRLARIRERLELPSYHNHNALTDALA 204 Query: 184 TLALV 188 + Sbjct: 205 CAEVY 209 >gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23] gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23] Length = 163 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R E +++ +P +Y + + Sbjct: 1 MRDFAAIDFET--ANNERTSVCSVGVVIV-RNGEIVDTFYSLI-QPEPNY-YNYWCSQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + V E ++I + + +N FD+ + +F D Sbjct: 56 GLSREDTEDAPV-FPEVWKQIEPLI---DGLPLVAHNKSFDESCLKAVFRCYQMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 Y F + + +L ++ G N H A AD Sbjct: 107 --------------YPDYPFYCTCVASRKAFPQLPNHQLHTVSEYCGYHLENHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|197121230|ref|YP_002133181.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] gi|196171079|gb|ACG72052.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] Length = 206 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 12/190 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D D V V ++ + +P DP ++ + Sbjct: 19 YWALDLETGGLDPRRDAILAVGMVPVRLGSVRLGESFSTLIRPEATAAIDPGSIRAHQLV 78 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P +++ + + ++ + D + + + R Sbjct: 79 PHDVASAPSLDSVLADV--DVRAREGALLV--HQASLDVAFLKRAYQRCGRRWP------ 128 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + ++ P L G+ HDA D AT Sbjct: 129 DPPVVDTVALLIKAAKRQRFVD--PDAPAIEPELNLLAARRRRGLPDYGQHDALTDAVAT 186 Query: 185 LALVWLIREK 194 L ++R + Sbjct: 187 AELFLVLRRQ 196 >gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] Length = 405 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 34/228 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ +D ET + DR +AG+ + E I++ + D +T Sbjct: 109 PDTYIAFDVET--PNKNNDRI-SYAGILLVCNGEIIKNYSTL---INPETRFDHFNTVLT 162 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI E+ I F +I +N FD Sbjct: 163 GIDASAVCHAP-TFKEYWPSIEDLFKK---YVIIAHNANFDLSVLSKTLLHYGLK----- 213 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++ + ++ ++P + L+ +A I N HDAK+D Sbjct: 214 ----------VPPIKYVCTYNESRNKFPQLGK----YSLKSMAEYFDIPLENHHDAKSDA 259 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 ++ I+ + +++ + N++P +V Sbjct: 260 QVCSSIFEAIKSQNYMFTPKEFEFH-----EEKTSEFNISPATNVETF 302 >gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81116] gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 81116] gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp. jejuni M1] gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 253 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ F I +N+RFD + + Sbjct: 126 YEMVENAP-SLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKYC 227 >gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 237 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKLSP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLARALKESLDYRLQHAFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H+A AD T Sbjct: 158 AEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] Length = 215 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + LA + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTLQTAKLFCELVNR 200 >gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] Length = 215 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + LA + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTLQTAKLFCELVNR 200 >gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10] gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125] gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92] gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10] gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92] gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125] gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 215 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + LA + AH Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTLQTAKLFCELVNR 200 >gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua] gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516] gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola] gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27] gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003] gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516] gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua] gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola] gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004] gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038] gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27] gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003] Length = 226 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F +P + PEA+ G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + LA + AH Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 193 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 194 ALYDTLQTAKLFCELVNR 211 >gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F] gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F] gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] Length = 226 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F +P + PEA+ G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + LA + AH Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 193 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 194 ALYDTLQTAKLFCELVNR 211 >gi|212634795|ref|YP_002311320.1| exonuclease [Shewanella piezotolerans WP3] gi|212556279|gb|ACJ28733.1| Exonuclease [Shewanella piezotolerans WP3] Length = 225 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 20/185 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D E G +V D+ V + +++ + ++ I GI + Sbjct: 45 IDLEMTGLNVQFDQILSIGMVPIQNGMLQLKDADYRLVSIEGSV---GDSAAIHGIVDGQ 101 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + E H F ++ ++ D + + +R F + Sbjct: 102 LETA-ISANEAM---HWFLEKTKGHVLIAHHAPLDLCFLKAEIFRCFGE------KMTFV 151 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D + + RA + I+ S +L G+ AH+A D + L Sbjct: 152 SIDTMSLERARILRQHEVIK-------EGSLRLDACRSRYGLPIYAAHNAAVDALSCGEL 204 Query: 188 VWLIR 192 + Sbjct: 205 LLAQM 209 >gi|330954936|gb|EGH55196.1| exonuclease [Pseudomonas syringae Cit 7] Length = 237 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + + + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] Length = 226 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + T F +P + PEA+ G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + N II +N FD + R Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + LA + AH Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 193 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 194 ALYDTLQTAKLFCELVNR 211 >gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 459 Score = 66.4 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337 >gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis] Length = 786 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 6/88 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G +F V + + C + DPEA TG+T Sbjct: 30 VAFDLETSGLGKKAC-ITEFGAVGAGG----TATFHEYVC-LPPGVVMDPEATKTTGLTA 83 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCI 93 + +G E R F + Sbjct: 84 EFLAENGRPFEEAYPRFVSFLRQQRPDV 111 >gi|78485464|ref|YP_391389.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2] gi|78363750|gb|ABB41715.1| Exonuclease [Thiomicrospira crunogena XCL-2] Length = 207 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 20/187 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G + DR + +++ ++ ++E + E++ I I Sbjct: 32 VCFDCETTGLNPRKDRIVSLSAIKIR--GNEVLTSEALNLTFVQEAAISEESIKIHWIRN 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + G+ E E F + ++GY ++ I Sbjct: 90 ED-TKAGLSEQEGIEAFLHFI--GSRPLVGYYLEFDVAMVNQIIKPWLGI---------- 136 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L + + + + + ++ HDA +D + T Sbjct: 137 -----TLPNAQIEVSSRYYDYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTS 191 Query: 186 ALVWLIR 192 + ++ Sbjct: 192 LIYIKLK 198 >gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] Length = 405 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 48/177 (27%), Gaps = 30/177 (16%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F + D ET G DR + A V V E P D A Sbjct: 1 MGRGFAVIDLETTGLFPQKHDRIVEVAIVHVSPAGVVEGVWETL-VNPMRDM----GAQR 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GI+ A R + + I + +N FD + + Sbjct: 56 IHGISAAAAARAPE-FSALAPSIASLLR---GRVPVAHNASFDARFLAHSMEHAGLACPD 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ + M+ F + L D + A G NAH Sbjct: 112 LAY--------WMCTMQLAGTFLQ------------GNRSLADCSAAIGYAMQNAHR 148 >gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 209 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 20/195 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ +I +++ F + D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIID--NRILTSQPFEVRLCAPQSLDSGSVRIHKIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q G+ E E ++ F N ++GY+ + + Sbjct: 88 HQDLQD-GLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L+ + + + HDA D A Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAA 189 Query: 185 LALVWLIREKKPKLF 199 + + + F Sbjct: 190 ALVFVRLTKGDLPQF 204 >gi|319951547|ref|ZP_08025351.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] gi|319434795|gb|EFV90111.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] Length = 231 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 8/110 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N + +D ET G D A + +D ++ + A + G Sbjct: 14 NRLLAFDLETTGPDPRTAHVVTSALIEIDGPHKRERNWLA-----DPGIEIPEGATDVHG 68 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 IT A G AE + ++ +N R Sbjct: 69 ITTAHAREHGRPHAEVIAETVEAIRQGWRDGRTLVVFNACYDLTILRRWH 118 >gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 34/213 (15%) Query: 1 MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ I+D E ++ D V + + E+ P DP Sbjct: 1 MSEKITIFDIE----ELNNDPVSVCSIGIVVL-EDMKVKETFYSLIRPPK--LTFDPYRY 53 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + I PQ + E +I ++F I+ ++I+ D + +F R Sbjct: 54 KVHKIRPQDLKKQP-TFPEIWPKISKYFENS---IVISHDIQSDLNHLLAVFRR------ 103 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + L + F P+ + + L L ++ NAH+A Sbjct: 104 ---FRIRKPTCYLSCTLVLAKLFHPELQK----------YGLGSLCDFYSVDLENAHNAL 150 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 AD A L+ + E+ + L + K + Sbjct: 151 ADSLACAELLKKMMEEHH--YTSLKELHEKENV 181 >gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61] Length = 215 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I+ +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|282864201|ref|ZP_06273257.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] gi|282560688|gb|EFB66234.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] Length = 241 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 10/91 (10%) Query: 5 FVIYD-------YETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 +D ET G DV DR A V D V + A Sbjct: 2 IHWFDGPLAAFGTETTGADVEEDRIVSAALVIQDTTG---GRFRVTRWLVSPGIPVPAGA 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSV 88 I G+T R+G A + + + Sbjct: 59 TEIHGLTDDHLQRNGRWPAPVMEELARALAE 89 >gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] Length = 283 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 57/208 (27%), Gaps = 27/208 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+++D ET G +R +FA D F + A + I Sbjct: 84 TFLVFDLETTGFFHVDNRIVEFA--LRDLSG---GKDCTFQTLINPERDVPIYASELNNI 138 Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117 T + R V ++ + + I +N FD + F R Sbjct: 139 TTELVCRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRC---- 194 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 + D L + R + D L L G +H Sbjct: 195 -SAQVPSDWLFVDSLRLAR----------KLKKIDGKKNLVNLVALGERYGLSSEGPSHR 243 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A DV A ++ I + L + Sbjct: 244 AMPDVEALCNILPKITLDLKLTCDDLMN 271 >gi|172040446|ref|YP_001800160.1| hypothetical protein cur_0766 [Corynebacterium urealyticum DSM 7109] gi|171851750|emb|CAQ04726.1| hypothetical protein cu0766 [Corynebacterium urealyticum DSM 7109] Length = 239 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 56/202 (27%), Gaps = 29/202 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV--------DRQWEKIESTEVFFCKPADDYLPDPE 56 + D ET G D D V + + + I + E Sbjct: 43 LLAVDVETTGLDPKKDLILSIGWVPMTGGRIFPAEADYAVIHHEPEVVERVPAGM----E 98 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + I GIT G + R+ + + + + ++F Sbjct: 99 SAKIHGITHTDI-EAGEPLRDVLSRLLLALR---GRAMVVHFSPIETQFLGQACRQHF-- 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++D + +P +D +L + G+ H +H+ Sbjct: 153 -------GSGLSVSVIDTFAIERRYFERMATYPRGED----LRLPRVRERYGLPHYGSHN 201 Query: 177 AKADVYATLALVWLIREKKPKL 198 A +D A L+ + + + Sbjct: 202 ALSDALACGELLLAMLKYERNN 223 >gi|34498401|ref|NP_902616.1| DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34104255|gb|AAQ60614.1| probable DNA polymerase III [Chromobacterium violaceum ATCC 12472] Length = 202 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 20/187 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET +V+ V++ +I +E + D +P + + G+ + Sbjct: 33 LDCETTSLNVSEAELLSVGAVKLRGD--RILHSEALYLLVKPDSVPSAGNIAVHGLRRRD 90 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 +G+ E R+ F ++GY ++ + + + Sbjct: 91 LA-EGLPAREAVSRLLAFI--GGRPLLGYYLEYDVAVLNKYVKPWLGIGLPQRQIELSAR 147 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 +D ++ R D L L G+ + HDA D + L Sbjct: 148 YYD---------------YRFRQRPDSHIDLSLDALHRELGVPALPRHDALNDALSAAML 192 Query: 188 VWLIREK 194 +R + Sbjct: 193 YQALRRR 199 >gi|207092434|ref|ZP_03240221.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPKX_438_AG0C1] Length = 160 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 10/97 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63 F D ET G + V+V + E I E K DY+ +TGI Sbjct: 73 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100 T + L E + + F N+ + +N Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL--GNSVFVAHNANF 160 >gi|71738029|ref|YP_276841.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558582|gb|AAZ37793.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326412|gb|EFW82465.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] Length = 237 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + + + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSHARRQ 213 >gi|220926351|ref|YP_002501653.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219950958|gb|ACL61350.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 296 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 59/240 (24%), Gaps = 32/240 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +I D ET G D A D + + F E +TGI Sbjct: 42 LILDTETTGLDPAADEVIELGIIAFTYGPSGRIHRVRHRFNQLQQPARPIPEEVTRLTGI 101 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T R + + +I +N + Sbjct: 102 TDADVAG-----RRIDDRAVEALAARARVVIAHNARFDRRMCEARWPVFAGLNW------ 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + Q P R++G + +L L +G H N H A D A Sbjct: 151 ------------------ACSCHQIPWREEGHEAARLGGLLADHGYFH-NGHRAIDDCEA 191 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 L L+ ++ +L + +L L S+ + Sbjct: 192 LLWLLARPLKRSGRLALATLMEAARRPTVRLWASDAPFALKDRLKDRNYRWSSRRRCWYI 251 >gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435] gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 52/197 (26%), Gaps = 30/197 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M N F+ D+ET + V+V E +ES + + Sbjct: 37 MGNAFIALDFET--ANGKRTSICSVGMVKV-VNNEIVESFYTL---VNPFDYFSQTNIEV 90 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP+ + E + + +N FD + ++ Sbjct: 91 HGITPEDVIDAPSFEY----VFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSM 146 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 Q R A + L+ L ++ HDA D Sbjct: 147 --------------------IYFCSYQLAKRTIDAYRYGLKHLMKHYKLDFHGHHDALND 186 Query: 181 VYATLALVWLIREKKPK 197 A + + + + Sbjct: 187 AKACAMITFRLLKHYDN 203 >gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] Length = 164 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 31/186 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + A + VRV + ++ C P + E I Sbjct: 1 MTSFVAIDFET--ANRAKESACAVGLVRV-ENLQIVQKAYYLICPPQPHF----EFTHIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + +H + T I +N FD + Sbjct: 54 GIRWTDVAAQP-TFGDLWSELHPLIA--GTDFIAAHNAGFDRSVLHACCNSYGIPRPAQN 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + R ++ P KL D+ G+E + H A +D Sbjct: 111 F------ICTVQLARRTWSLYPT--------------KLPDVCRFLGLELDHHH-ALSDA 149 Query: 182 YATLAL 187 A + Sbjct: 150 EACAQI 155 >gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] Length = 497 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 272 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 327 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 328 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 375 >gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] Length = 212 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 64/199 (32%), Gaps = 30/199 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G D D + A V V D + + + P DPEA+ ITG Sbjct: 16 VVIDVETGGFDAKKDALLELAAVLVNFDENQRLCRTHTIHYHIHPFPGANIDPEALKITG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR E + + R I+ +N FD + + R Y Sbjct: 76 IDPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINALAERTDYK 135 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + +LD + + L +A G E+ A Sbjct: 136 ------RNPFHPFSVLDTVSLGALAYGQTV-------------LARIARQGGFEYDSSKA 176 Query: 175 HDAKADVYATLALVWLIRE 193 H AK D T + I Sbjct: 177 HGAKYDAELTADIFCHIVN 195 >gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila DC2201] gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila DC2201] Length = 193 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 25/188 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F D+ET + +L VRV R + +++ PA +P V I Sbjct: 1 MPVSFTAIDFET--ANRSLASACALGVVRV-RDGQVVDTRYSLIRPPAGHDAFEPGNVRI 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GI P + + + + ++ +N FD + D Sbjct: 58 HGIRPAEVTHAP-TFDRLWDWMCENITPEDPDAVLVAHNAVFDTGVVKAANRACGRDP-- 114 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 WD +R A S+ L + A G E + H+A + Sbjct: 115 -------RPWDYACTLRLARAAY-----------TLRSYALPSASRAAGAEVEDHHNALS 156 Query: 180 DVYATLAL 187 D A + Sbjct: 157 DALACAGI 164 >gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 238 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 29/227 (12%) Query: 14 GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGV 73 G + + V V F D L DPEA + GI+ + Sbjct: 5 GVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGVHGISDEFLADKP- 60 Query: 74 VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133 A+ + +F I +N FD + F D + + D L Sbjct: 61 TFADITPEFLEFIRGAELII---HNAAFDIGFMDYEFRMLQQDIPKTE--TFCTITDSLL 115 Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLI 191 + R ++ L L I++ H A D + + Sbjct: 116 LARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAM 161 Query: 192 REKKPKLFEYL----YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 + L + + ++++ + +++ + A+ Sbjct: 162 TGGQTSLSFSMEGDQTQNESSEDIQRITRPASGLKIIYATEDEIAAH 208 >gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061] gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus nematophila ATCC 19061] Length = 211 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + T F P + DP A+ TG Sbjct: 12 VVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFTG 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E I + N I+ +N FD + R+ Sbjct: 72 IDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGLK 131 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 132 RIPFHPFATFDTAALSGLVLGQTILAKAC-----------------ITAEIPFDSDQAHS 174 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 175 ALYDTDRTALLFCELVNR 192 >gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 236 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + D+ V ++ I+ + F +V I G+ P Sbjct: 42 VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AL G AE + F N+ ++ ++ + + + R ++ + Sbjct: 100 S-ALAAGCDPAEALLDLLDFI--GNSPVLAFH-----APFDQRMLARALKETLGHRLQSM 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L M + L D G++ H A AD T Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198 Query: 186 ALVWLIREKKPKL 198 L ++ + + Sbjct: 199 ELALILFSQARRQ 211 >gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 217 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + + E F +P D +A+ G Sbjct: 20 VVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDKKAIEFHG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR + E E I + II +N FD + R Sbjct: 80 IDPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAAITRTKIK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + A+ ++ AH Sbjct: 140 NNPFHSFVIFDTATLSGLAVGQTVLARACK-----------------AIGLTFDNNQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTQQTANLFCKIVNR 200 >gi|237785812|ref|YP_002906517.1| putative DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii DSM 44385] gi|237758724|gb|ACR17974.1| putative DNA polymerase III epsilon subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 256 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 16/204 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D DR V ++ + + + + + + + + ++ I GIT Sbjct: 64 LLAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIHGIT 123 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G + + + + + + + R Sbjct: 124 DSQLEN-GRSLLDILTDV---VNAAAGRALLAHLALIEHDFISTACERAVG--------V 171 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 S ++D M + + P R + +L + + G+ + H+A D A Sbjct: 172 PWSPLCVVDTMDLERRSAVSFGRRPGRGEV----RLMNARYSRGLPSYHNHNALVDALAC 227 Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208 L E + R K Sbjct: 228 AELYLAQTSADHFGSELVSVIRKK 251 >gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 209 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 50/196 (25%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63 +V D ET D A ++ EV C P D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQS---LDSGSVRIHKI 86 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q G+ E E + F N ++GY+ + + Sbjct: 87 RHQDLQD-GLSEKEALILLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L+ + L + + N HDA D A Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQNKHDALQDAIA 188 Query: 184 TLALVWLIREKKPKLF 199 + + + F Sbjct: 189 AALVFVRLTKGDLPQF 204 >gi|213967758|ref|ZP_03395905.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301382395|ref|ZP_07230813.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302061212|ref|ZP_07252753.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302132416|ref|ZP_07258406.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927534|gb|EEB61082.1| exonuclease [Pseudomonas syringae pv. tomato T1] Length = 237 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKLSP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + ++ + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLARALKESLDYRLQHAFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H+A AD T Sbjct: 158 AEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELTLILFSHARRQ 213 >gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251] gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 247 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 6/108 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++I D ET G DR Q + + +IE FF A+ Sbjct: 1 MAKRYIILDTETTGIG-EEDRVIQLGFIVLGE--REIEVQNEFFST---SVPISFGAMET 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 GITP+ + + S R + +I +N D + Sbjct: 55 HGITPEMLDGKPLCKDSTSYRRLNELNSDENYLIIHNAKFDIDMLQKE 102 >gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 497 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 272 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 327 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 328 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 375 >gi|320330625|gb|EFW86603.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 237 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + D+ P AV I G+ P Sbjct: 44 VVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E +F ++ I+G++ FD + + + + + Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFDA 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +L L D G+ H A AD T Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200 Query: 186 ALVWLIREKKPKL 198 L ++ + Sbjct: 201 ELALILFSDARRQ 213 >gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92] gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus 525.92] Length = 273 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D ET G + + + +++ + +I E F P +TGI+ Sbjct: 76 FCIVDIETSGG-ITSGQIIEIGALKI-KNGVEIGRFESFVDAP----FVPENITQLTGIS 129 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R F T + +N+ FD + Sbjct: 130 QSDLTGAP-SLKSVLERFKIFL---GTSVFVAHNVNFDYGFISQSLSNIGLGMLLN---- 181 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D+ R A + L L GI + + H A D A Sbjct: 182 --RKLCTIDLSRRTIASQ--------------KYGLGSLKELLGINNTH-HRALNDAIAA 224 Query: 185 LALVWLI 191 ++ + Sbjct: 225 TEILKIC 231 >gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207] gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207] Length = 221 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V +D Q I+ T P + + A+ TG Sbjct: 29 VVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEKAALEFTG 88 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I R E E R I + ++ +N FD + RN Sbjct: 89 IDIYDPERMPEEEGEALRDIFRPIRHEISATGCTRSVMVAHNAHFDLGFVNAAVNRNQIK 148 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + A ++ +AH Sbjct: 149 RNPFHPFSCFDTSTLAGLAYGQTVLAKACQ-----------------AAKMDFDNRSAHS 191 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 192 ALYDAVKTAELFCGIVNR 209 >gi|315605967|ref|ZP_07880998.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180 str. F0310] gi|315312249|gb|EFU60335.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180 str. F0310] Length = 250 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 24/200 (12%) Query: 8 YDYETFGRDVALDRPAQFAGV-RVDR-----QWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +D ET G DR A V R+D + + + +A + Sbjct: 11 FDTETTGVRPLKDRLVTAALVLRIDGASYRFGVSEPDQVATWLT--DPGVEIPEQATAVH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT +A +G E + + N +D R+ S+ Sbjct: 69 GITTAQARDEGRPIEEVLHELAGSIVEHWLRGYPLVAFNASYDITLVNQELRRHRVGSFE 128 Query: 120 WSWDN-GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177 + D L + R + F L ++A G +AH A Sbjct: 129 ERLEGAPMLVVDPLVLDRKLDRFR------------KGKKTLTEMAPVYGAAVSPDAHTA 176 Query: 178 KADVYATLALVWLIREKKPK 197 + DV TL ++ I +K P+ Sbjct: 177 EVDVAMTLDVLAGIADKYPQ 196 >gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 282 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 64/199 (32%), Gaps = 35/199 (17%) Query: 1 MTNHFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAV 58 M FV++D+ET G++ V + + F+ + +P A+ Sbjct: 1 MIEDFVVFDFETARGKNP-----CSLGMVEY-KNGK---KYREFYELINPEVAYFNPFAI 51 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + + +E + F + +N +FD+ R D Sbjct: 52 QIHGITYEDVQHE-RNFSELWDAMLPFIE---GKTLVAHNAKFDNAVLLYSLQRYGIDVP 107 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + + L R + A S+KL LA + + H+A Sbjct: 108 ------PYASFCTLQRARRLVAL--------------PSYKLSSLANFFEVPQLRHHNAL 147 Query: 179 ADVYATLALVWLIREKKPK 197 D + L + + + Sbjct: 148 EDAFVCGELFLKLNRVEEE 166 >gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799] gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799] Length = 222 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 61/199 (30%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++D Q + + T F P + +P A+ G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGANLEPAALEFNG 79 Query: 63 IT-PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 IT P ALR V E E I + N II +N FD + R Sbjct: 80 ITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQSFVNAASERTKM 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A ++ AH Sbjct: 140 KRVPFHPFGTFDTAALSGLALGQTVLAKACR-----------------AAGIPFDNKEAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 SALYDTQRTAELFCYIVNR 201 >gi|317051245|ref|YP_004112361.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316946329|gb|ADU65805.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 206 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 52/189 (27%), Gaps = 20/189 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV D VR+ F P + E++ I + Sbjct: 34 FDCETTGLDVHHDEIISIGAVRIRGNQILTSEKLELFFNPQQEMRV--ESIKIHHLLTCD 91 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + GV E R+ F N ++GY + + R + N Sbjct: 92 LVD-GVPLEEGIRQFLNFI--GNRPLVGYY-----LEFDVAMVNRVLKPMLGITLPNRQI 143 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 L + + G + + + HDA D T + Sbjct: 144 EVSGL----------YYDKKIAAIPQGNVDLRFDSIMHDLDLPPFAKHDALGDAIMTAMM 193 Query: 188 VWLIREKKP 196 ++ K Sbjct: 194 YVKLQHIKY 202 >gi|295690334|ref|YP_003594027.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] gi|295432237|gb|ADG11409.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] Length = 297 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 2/68 (2%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G D + A + R E E F PE +TGI Sbjct: 44 LFVDVETTGLDPKQHEIIELAMIPFRYGLDGVIYEVLEPFHGFRQPSGPIPPEITALTGI 103 Query: 64 TPQKALRD 71 Sbjct: 104 DDAMVAGQ 111 >gi|148272897|ref|YP_001222458.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830827|emb|CAN01769.1| putative DNA polymerase III , epsilon subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 233 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 9/123 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET G DV R V +D Q E +E + A I G Sbjct: 7 DTLASFDLETTGVDVETARIVTACIVVLDAQGEVLERHDWLA---DPGVEIPAGAAAIHG 63 Query: 63 ITPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T ++A G A E I F+ ++ YN +D R+ + Sbjct: 64 VTTERARAAGRDAAVVVLEIVTTIRAMFAR-GLALVVYNAP-YDLTLLNREAVRHGVEPL 121 Query: 119 RWS 121 R + Sbjct: 122 RDT 124 >gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 240 Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 23/195 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + DR A + +R + + P A + G+T + Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73 Query: 68 ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 GV E + I + ++G+N FD R+ + R Sbjct: 74 LQAHGVDPRVGLEEVTGIIAETMRR-GVPVVGFNV-TFDFAILEAELARHNLPTLR--QR 129 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVY 182 S ++D + L + A + + H+A+ADV Sbjct: 130 LEGSVGPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVS 180 Query: 183 ATLALVWLIREKKPK 197 ATL L+ + E+ P+ Sbjct: 181 ATLDLLGAMSERFPE 195 >gi|255523173|ref|ZP_05390144.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296186139|ref|ZP_06854544.1| exonuclease [Clostridium carboxidivorans P7] gi|255513041|gb|EET89310.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296049407|gb|EFG88836.1| exonuclease [Clostridium carboxidivorans P7] Length = 255 Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 30/217 (13%) Query: 4 HFVIYDYETF-GRDVALD-----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++++D E + + Q V++D + I S KP Sbjct: 2 NYIVFDLEFNQSLNSKKENKNLTNLKCPFEIIQIGAVKLDENLQII-SILNKLVKPELYT 60 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + +P +TGIT E + I +F + + + + ++ Sbjct: 61 VMNPFVEEMTGITIDML-NTEQPFQEVYKEILEFIGNDKNILCVWGACDIKELFRNIQYH 119 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + N YA + + +L ++ + N Sbjct: 120 NLDISPISKEYINIQF-----------YASKYLNCPKGTNIGLKNAAELLNINIEN---- 164 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 H+A D Y T + I +K + +Y + K Sbjct: 165 -KFHNALNDAYYTAEVFKKIPKKNINIIKYDVNKNMK 200 >gi|313681469|ref|YP_004059207.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154329|gb|ADR33007.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 247 Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 27/203 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ D ET G DR Q + +D + +E + A+ + Sbjct: 1 MAKYILLDTETTGAG-DDDRIIQLGYMVLD--GKNVEVYNEMCST---EVAISYGAMEVH 54 Query: 62 GITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP+ E +++ + + + +I +N Sbjct: 55 GITPEMIEGKPSCRETSAFQKLCE-LNTSDNVLIIHNAPFDLGML--------------- 98 Query: 121 SWDNGNSRWDLLDVMRAIYAFSP--DGIQWPSRDDGATSFK-LQDLALANGIEHVNAHDA 177 + +N +S+ L+D +R + + +K QD A + GIE AHDA Sbjct: 99 TKENFSSQMRLIDTLRCARHLFDEEESHRLQYFRYRLGLYKIEQDEAESLGIEV-KAHDA 157 Query: 178 KADVYATLALVWLIREKKPKLFE 200 DV + +R++ + +E Sbjct: 158 IGDVLVLKLFLTELRKRLQERYE 180 >gi|227548071|ref|ZP_03978120.1| DNA polymerase III, epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227079869|gb|EEI17832.1| DNA polymerase III, epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 188 Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 27/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPEAV 58 H + D ET G D+ V V+ I+ V + + Sbjct: 15 HLLAVDVETTGLKPERDQLVSIGWVPVND--RVIDLSGAAHFVVAGASVGN-------SA 65 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G+T L G AE + + + + + Sbjct: 66 TLHGVTDDDVLASGTDIAEIVEHFERAIA-------------GRKLLAHFAQMELGFIGH 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + G D + +A ++ + +L + G+ H+A Sbjct: 113 AFKQVRGTRWRLREDEVVDTFALERRHMERMATYPRGEDLRLARVRQRYGLPAYRNHNAL 172 Query: 179 ADVYATLALV 188 D A L Sbjct: 173 TDAVACAELY 182 >gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis] gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis] Length = 460 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 42/255 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V++D ET G D + D Q A ++ + P D A + GI+ Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC--ASENG---DNLHSRYMFPRGS--IDLGATRVHGISK 209 Query: 66 QK------ALRDGVVEAEFS------RRIHQFFSVPNT------CIIGYNNIRFDDYYSR 107 ++DG A+ + R F + + C++ + FD Sbjct: 210 AFIDGSRVLVKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLI 269 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--- 164 N R+ G+ D + V+RA + + +SFK + L+ Sbjct: 270 NCLKRHNL--MNEFISTGSVLLDSVKVVRAS--------KKQEKSPFDSSFKKESLSALH 319 Query: 165 -LANGIEHVNAHDAKADVYATLALVWLIREKKP---KLFEYLYDYRNKNQLRKLIDIQNM 220 G+ HDA+AD A ++ I + + ++ ++ +++ Sbjct: 320 GHLFGVPIDRPHDAQADACALSKVLMKIPKNMSTSVTINNFMKQMKHSQEVKNRKFTLWG 379 Query: 221 TPLVHVSGMFGASRS 235 P+ A Sbjct: 380 LPVSLFMIEKIAKSG 394 >gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179] gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179] Length = 224 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 57/203 (28%), Gaps = 30/203 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + V + + + F K + DP ++ I G Sbjct: 33 VIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLFEGANVDPNSLKING 92 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R+ V E Q I+ +N FD + R Sbjct: 93 INPDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNFLMAAINRTGIK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L+ GI A Sbjct: 153 ------RNPFHPFSTFDTATLAGFMFGQTV-------------LRTACDNAGIPFEPSKA 193 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D T L L+ K + Sbjct: 194 HSALYDTEKTAELFCLMVNKLKQ 216 >gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] Length = 177 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V + + ++ + V I GI Sbjct: 2 NFVALDFET--ASHQRHSACSIALTVV-KNSQIVDHYYSL---IKPETEFFWRNVQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E +I FF N I+ +N + Y + Sbjct: 56 TEDDVQTAP-SFPEVWEKIKPFFKE-NKLIVAHNLPFDRGVLQGCLDY----------YQ 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L +++ + + KL + GI N H+A D A Sbjct: 104 LQQPHFQTLCTVQSSRKLITEI----------PNHKLNTVCDHLGIRLDNHHNALEDSNA 153 Query: 184 TLALVWLIREK 194 A++ + + Sbjct: 154 CAAILLYLEDH 164 >gi|301612101|ref|XP_002935535.1| PREDICTED: three prime repair exonuclease 2-like [Xenopus (Silurana) tropicalis] Length = 230 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 26/202 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV----------RVDRQWEKIESTEVFFCK-PADDY 51 FV D E G + L + + V D+ ++ C Sbjct: 6 KSFVFLDLEATGLNYNLPKITELCLVAVHVSSLENPETDQSEVQLPRVLDKLCLCVDPKK 65 Query: 52 LPDPEAVFITGITPQKALR--DGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSR 107 EA ITG++ +K + + +F + C++ +N + +D + Sbjct: 66 PITKEACNITGLSNEKLANCEKPCFNLNLVQLVKEFLNRQAQPVCLVAHNGLFYDFPLLK 125 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALA 166 F N LL + ++ S L +L + Sbjct: 126 AEFQ----------QQNEELPGSLLCLDSLKAFRQLSQQDRRHQEFTKGSHTLTELYRRS 175 Query: 167 NGIEHVNAHDAKADVYATLALV 188 G E +++H A+ DV + + Sbjct: 176 FGKEPIDSHYAEGDVLTLIKVF 197 >gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 682 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 46/183 (25%), Gaps = 31/183 (16%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V +D ET G + DR R+ + E F + I G+ Sbjct: 490 IVAFDTETTGLALREGDRLISLGACRI-VNGRLLAD-ETFEQHVNPQRPIPSASTAIHGL 547 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q E + R + + ++ +N FD + Sbjct: 548 GDQDVENAPTAE-QVLPRFRDYV---GSAVLLAHNAAFDM---------LAIRPGPGTDA 594 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181 D L + RA D G L LA G H A D Sbjct: 595 FDMPVLDTLLLSRA-------------LDPGLEGHDLDSLAKRYGLRFPPGTRHTALGDA 641 Query: 182 YAT 184 T Sbjct: 642 RVT 644 >gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] Length = 212 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q ++T F +P + +P A+ TG Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMAAAERAGLK 139 Query: 117 SYRWS 121 + Sbjct: 140 RNPFH 144 >gi|9630507|ref|NP_046936.1| gp41 [Enterobacteria phage N15] gi|3192726|gb|AAC19079.1| gp41 [Enterobacteria phage N15] Length = 304 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 12/191 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + +V+ D ET G ++A + PE I Sbjct: 17 LKSDYVVIDTETTGLG-------EYAEIIEIAIINMRGEVL-LDTLVKPTKPIPPEVTEI 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT + + ++ S + +N+ + F + + Sbjct: 69 NHITNEMVASAPA-WCDVFPKVLAIISKHK--WLAWNSGFDARMLEQTCLNTIFLNKNAY 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 SR + A + ++ ++ L A +G+ AH A AD Sbjct: 126 YVTAMVSRIHTSHI-DAKAVYDTWYGEYDAKHQAFKRQSLTIAAARHGVLLEGAHRALAD 184 Query: 181 VYATLALVWLI 191 LA++ + Sbjct: 185 CKMVLAVLQKV 195 >gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii] gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii] Length = 175 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V YD ET + +F V V R E+++S +P+ L P +V Sbjct: 2 IVFYDVETT-VPEVKGQGYEILEFGAVVVSARGLEELDSFTTL-VRPSSLALVSPRSVSC 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E + R+H G+N +RFD + + Sbjct: 60 NGIVQDSLVGAP-SFLEIADRVHALL--HGRVWAGHNILRFD-NLRIKEAFAS----IGR 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D ++R + A + K+ LA G+ H + AD Sbjct: 112 AGPEAAGHIDTFPLLRKSF------------GQRAGNLKMATLASYFGLG-KQEHRSLAD 158 Query: 181 VYATLALVWLI 191 V + ++ L Sbjct: 159 VRMNIEVLKLC 169 >gi|299066912|emb|CBJ38107.1| oligoribonuclease [Ralstonia solanacearum CMR15] Length = 219 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 N+ V D E G DR + A V D + + V D+ L +A Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDELLDGMDAWNKGT 87 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K EA+ + F + + N+I D + + Sbjct: 88 HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147 Query: 116 DSYRW 120 + Sbjct: 148 YFHYR 152 >gi|119587653|gb|EAW67249.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] Length = 179 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|308179139|ref|YP_003918545.1| exonuclease [Arthrobacter arilaitensis Re117] gi|307746602|emb|CBT77574.1| putative exonuclease [Arthrobacter arilaitensis Re117] Length = 467 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET + +V R + I+ P + I IT Sbjct: 3 FTAIDFET--ANGKRASVCAVGMTKV-RNGKIIDQASWLIKPPHGFTTFADRNIAIHKIT 59 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E + RI F I+ + FD R + D + W Sbjct: 60 EADVVNAP-SWTESAARIRDFV---GNDIVVAHYATFDKSVWRQACEWSGVDFGDFHW-- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D+ RA L +A + GI+ ++ H+A +D Sbjct: 114 ----LCSRDLARAHLGLQDC--------------SLPTVADSLGIKGLDHHNAASDASVC 155 Query: 185 LALVWLIREKK 195 +V I ++ Sbjct: 156 AQIVLAIAQRA 166 >gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] Length = 233 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 30/171 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 49 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F I +N+RFD + + Sbjct: 103 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 154 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 R ++ + + +KL+ L G+E+ + Sbjct: 155 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTHHR 189 >gi|315644054|ref|ZP_07897224.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453] gi|315280429|gb|EFU43718.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453] Length = 397 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 5/121 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + F ++D E V + VR+D + E T + KP+ +P P AV Sbjct: 21 LEQKFCVFDLEATDDQVENAEVVEIGAVRMDSTGIQEEQTFHTYIKPS-GPIPQPIAVS- 78 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + F + + Y F + R+ Sbjct: 79 TGIYNADVEGSPR-FPKGYGMFTGFANEC--IFVTYGGYEFVLPLLQRECARHGLPEPAN 135 Query: 121 S 121 Sbjct: 136 P 136 >gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 235 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 58/207 (28%), Gaps = 26/207 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V + S D P +V I G+ P Sbjct: 42 VVVDLETSGLNLNRDQVLSIGAVVI-EDGAVDFSQLFERTLQRTDTKLSP-SVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E + F + + FD + + + + Sbjct: 100 S-AIAAGSDPVEA---LLDFMEFVGDSPLLAFHAPFDQHMLGRALKDSLGYRLAHPFLD- 154 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D+ ++ G L D ++ H A AD AT Sbjct: 155 --VADIAPLLCPEAHIREAG--------------LDDWINHFKLQVGERHHASADALATA 198 Query: 186 ALVWLIR---EKKPKLFEYLYDYRNKN 209 L+ ++ ++ + R Sbjct: 199 ELMLILFSRARQQHIDTPHALQTRLSQ 225 >gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] Length = 256 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTG-SVSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F I +N+RFD + + Sbjct: 126 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKYC 227 >gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ADP1] gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter sp. ADP1] Length = 450 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 225 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 280 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + L AE + + ++ I +N FD + F R Sbjct: 281 DEFLLDKPK-YAEIAEPLFEYLKGAE---IIAHNASFDMNFLDMEFKRAGLP 328 >gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant) gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant) gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant) gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant) gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site Length = 235 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 40 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E I + N I+ +N FD + R Sbjct: 100 IDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G++ A Sbjct: 160 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 200 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 201 HSALYDTERTAVLFCEIVNR 220 >gi|213646704|ref|ZP_03376757.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 154 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 14/149 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N ++ D ET G + + D + EA+ I G Sbjct: 18 NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + F + YN FD R + N S W Sbjct: 70 ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125 Query: 123 DNGNSRWDLLDVMRAIY--AFSPDGIQWP 149 + + +G +W Sbjct: 126 MLAAHSVCAMKLYAEYRGEPGRFNGYKWH 154 >gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043] gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043] Length = 221 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 68/227 (29%), Gaps = 43/227 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYL 52 M F V+ D ET G + D + A V +D Q + + T F +P + Sbjct: 10 MAQRFRGFLPVVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGAN 69 Query: 53 PDPEAVFITGIT-----PQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRF 101 + A+ TGI Q+ + E + I + + I+ +N F Sbjct: 70 IEQAALDFTGIDLDSPLRQQVA---LSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAF 126 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + RN N + D + L Sbjct: 127 DQGFLNAAVERNGIK------RNPFHPFSCFDTATLGGLVYGQTV-------------LA 167 Query: 162 DLALANGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206 A GIE N AH A+ D T L + + L + + Sbjct: 168 RACRAAGIEFDNASAHSARYDTERTAELFCAMVNRYKNLGGWDLALK 214 >gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402] gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 297 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 57/225 (25%), Gaps = 30/225 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ D+ET + V+V TE F+ + + + + Sbjct: 1 MNSFIALDFET--ANHNAASICSVGMVKVIDNMM----TETFYTLVNPETNFNTSNINVH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I P+ E S + + +FD R ++ Sbjct: 55 NIKPEDVTAAPTFE----TVYPHMLSFIGDLPVVCHFAQFDMKVLHASIKRYHFEMPTLP 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + S+ L+++ +E H A D Sbjct: 111 Y--------------------FCSCIMARDTVTNHSYSLKNMMTYYNLEFHGHHHALNDA 150 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 A + + + L +YL R K + + + Sbjct: 151 KACAMITVRLLKNYESLNQYLTYKRRKKYISSVSLKSKRAQMARY 195 >gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 185 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 30/201 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N FV D+ET + V+V E +E+ + + + + Sbjct: 4 KNAFVALDFET--ANGKRTSICSVGMVKVVDN-EIVETFYTL---VNPNDYFSQQNINVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ V + QF + +N FD D+ + Sbjct: 58 GIQPEDVATAPVFNF-VLPYMLQFIEN---LPVVAHNAAFDMTVLHASIQALGLDTPEMT 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +Q R A + L + ++ HDA D Sbjct: 114 Y--------------------FCSLQLARRTVNANRYGLNHMMEYYHLDFHGHHDALNDA 153 Query: 182 YATLALVWLIREKKPKLFEYL 202 A + + + + L + L Sbjct: 154 KACAMITFRLLKNYDSLNDML 174 >gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] Length = 217 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 26/201 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + F +P + DPE++ G Sbjct: 23 VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPFEGANIDPESLKFNG 82 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + +E + + + + II +N FD + R Sbjct: 83 IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D + + F + AH Sbjct: 143 ------RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPF-----------DSQQAHS 185 Query: 177 AKADVYATLALVWLIREKKPK 197 A D T L + + Sbjct: 186 ALYDTERTAELFCYMVNHLKQ 206 >gi|284005763|ref|YP_003391582.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] gi|283820947|gb|ADB42783.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] Length = 193 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 57/202 (28%), Gaps = 27/202 (13%) Query: 4 HFVIYDYETFGRD----------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 ++I D ET G R A D + +++ KP Sbjct: 2 TYLIIDTETNGLPQSYHLPVTDLTNWPRLISVAWGLYDEEGKELCRHYA-IVKPDGYRW- 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + A I ITP++A G + ++ + +NI D F R Sbjct: 60 NKVAQQIHRITPEQAETKGQPLDDVLNQLCPAMERADA--WVGHNIDLDYGVIGAEFIRA 117 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHV 172 + +L +L G + Sbjct: 118 EQRQPGRVGEFP------------ARPVLCTMDVSAKVTPNREPVRLDELYQLLTGKKMK 165 Query: 173 NAHDAKADVYATLALVWLIREK 194 HDA AD+ AT+ + ++++ Sbjct: 166 GMHDASADMLATVRCFFGLKQR 187 >gi|153839349|ref|ZP_01992016.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|149747140|gb|EDM58128.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] Length = 209 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 20/194 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET D A ++ +I +++ F + D +V I I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIID--NRILTSQPFEVRLRAPQSLDSRSVKIHKIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q G+ E E ++ F N ++GY+ + + + Sbjct: 88 HQDLAD-GISEKEALLKLLAFI--GNRPLVGYHIRYDKKILDLACQRQLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189 Query: 185 LALVWLIREKKPKL 198 + + + Sbjct: 190 ALVFVRLTKGDLPN 203 >gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221] gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family [Campylobacter jejuni RM1221] Length = 233 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 49 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 102 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F I +N+RFD + + Sbjct: 103 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 154 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 155 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 197 Query: 185 LALVWLI 191 + Sbjct: 198 AEIFKYC 204 >gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046] gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046] Length = 474 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 9/111 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++ + GI+ Sbjct: 249 LILDTETTGFYYQDGDRIIEVGAIEM-VNRKLTGSSIHIYINPKK---PVGDSENVHGIS 304 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + E + + + I +N FD + F R + Sbjct: 305 DDFLKDKPL-YQEIADTLFAYLKGAE---IIAHNASFDMNFLDMEFKRAGF 351 >gi|83591972|ref|YP_425724.1| DNA polymerase III subunit epsilon [Rhodospirillum rubrum ATCC 11170] gi|83574886|gb|ABC21437.1| Exonuclease [Rhodospirillum rubrum ATCC 11170] Length = 209 Score = 65.6 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 56/191 (29%), Gaps = 17/191 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D D A VRV KP+ +AV I + Q Sbjct: 34 VDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKPS--RPIRRDAVCIHHLREQD 91 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 R G+ E R +F + +IGY F D W Sbjct: 92 VER-GLAPREAVARFLRF--AGSRPLIGYYL----------EFDVALIDRLVRPWLGIGL 138 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 ++V Y + G G + + A I ++ HDA D T Sbjct: 139 PNPRIEVSEMFYDWRTRG--REELYTGTVDLRFATILEALDIPPLHNHDAFEDAVMTSLA 196 Query: 188 VWLIREKKPKL 198 +R + + Sbjct: 197 YLKLRARAGRQ 207 >gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059] Length = 438 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 213 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 268 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + AE + + ++ I +N FD + F R Sbjct: 269 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 316 >gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] Length = 452 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 227 LILDTETTGFYYQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 282 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + AE + + + I +N FD + F R Sbjct: 283 DEFLQDKPK-YAEIADALFAYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 330 >gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp. D11] gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11] gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11] Length = 191 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 23/195 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 N + D ET G + Q +R+D+ + +E F+ KP ++ + +A+ + Sbjct: 1 MNKIIFIDTETGGVNPEKSALIQLSGIIRIDK--KDVEKFN-FYIKPFENSEVNEKALEV 57 Query: 61 TGITPQKALRDGVVEA-EFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYR 112 G T + + +E E ++ + I+ N+RFD + +F R Sbjct: 58 QGRTLDELKAEKYIEEKEVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQR 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + N + LD +S +Q + KL+ GIE Sbjct: 118 HG----------NNFLFSYLDSSMLDPLYSIRLLQIAGILPVLENNKLETWCKHFGIEL- 166 Query: 173 NAHDAKADVYATLAL 187 AHD+ D+ AT L Sbjct: 167 KAHDSLEDIVATKKL 181 >gi|152988293|ref|YP_001347274.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7] gi|150963451|gb|ABR85476.1| probable nuclease [Pseudomonas aeruginosa PA7] Length = 208 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 49/181 (27%), Gaps = 20/181 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET D V V R + + +P D E++ I + Sbjct: 35 LDLETTSLDPRRADILSIGAVLVRRGKLVLGERLELYVEPPPSL--DAESIRIHKLRRAD 92 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + E RR+ F ++GY +R++ R +D + S Sbjct: 93 LEGQ-LQLDEALRRLLAFIGDRP--LLGYYLSFDIAVLNRHLRQR--FDLQLRNPTIEVS 147 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 V R D + LA A + H A D A + Sbjct: 148 SLYHRKVSR-------------HFPDAHLDLRFDTLARALDVPVSGRHTALGDAQAVALM 194 Query: 188 V 188 Sbjct: 195 F 195 >gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium linens BL2] Length = 578 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 10/108 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D A R A V A + GIT + Sbjct: 364 FDLETTGVDPATARIVTAAFVESAEN--------ARTWLADPGVEIPEPARAVHGITTEF 415 Query: 68 ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRN 113 A +G AE + + ++ +NI +D R+ Sbjct: 416 AQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKRH 463 >gi|288941633|ref|YP_003443873.1| ribonuclease T [Allochromatium vinosum DSM 180] gi|288897005|gb|ADC62841.1| ribonuclease T [Allochromatium vinosum DSM 180] Length = 226 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 64/216 (29%), Gaps = 26/216 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-VFFCKPAD--DYLPDPEAVFITG 62 V+ D ET G D + A V + ++ + + C DP A+ G Sbjct: 21 VVVDVETAGFDAQRHALLEVAAVIIRQRSDGLLEPAPTLACHVLPFVGSELDPRALAFNG 80 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P RD + E + RI N I+ +N FD + + R Y Sbjct: 81 IDPHHPFRDAISEHDALERILTPIRKAVKSTGCNRAILVGHNAHFDLGFIKAAVERTGYK 140 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + + D + + A +H AH Sbjct: 141 ------RNPFHAFSVFDTVTLGGLMFGQTV-----------LAKASRAAGLHWKHSEAHS 183 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 A D T L + + +L Y RN + Sbjct: 184 AAYDAEQTARLFCAVVNRWRELDPERYWERNSEVVA 219 >gi|261880650|ref|ZP_06007077.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332603|gb|EFA43389.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 907 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 36/234 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-----DYLPDPEAVF 59 V++D ET G +V D Q A R+ R + ++ V + +P+P Sbjct: 527 IVVFDTETTGLNVFDDDVIQIAAERI-RNGKTVDKFSVHIETGREIPKMLGDIPNP---- 581 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I ++ + E + F + ++ +N +D R + Sbjct: 582 ---IIGEREHQTIRPHEEGLQMFLDFV---GSDVLIGHNAEYDYRIMDYNLRRYL--PHV 633 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D L ++R + + +E N+H A Sbjct: 634 DWQKEHPVCLDSLKIIRLLRPELKAFKLKLLLQELH-------------LEGTNSHLADD 680 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 DV AT++L+ + + K L + + + L A+ Sbjct: 681 DVNATVSLLRYCNTRAQE-----LLNSQKEFLGRKTTRERIRLLRQNYHELYAT 729 >gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063] gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063] Length = 240 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 21/194 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + DR A + +R + + P A + G+T + Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73 Query: 68 ALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +GV E I ++G+N FD R+ + R Sbjct: 74 LQANGVDPRVGLEEVAGIVAETMRRGVPVVGFNV-TFDFAILEAELARHNLPTLR--QRL 130 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYA 183 + ++D + L + A + + H+A+ADV A Sbjct: 131 EGTVGPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVSA 181 Query: 184 TLALVWLIREKKPK 197 TL L+ + E+ P+ Sbjct: 182 TLDLLGAMSERFPE 195 >gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320] gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906] gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320] gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906] Length = 212 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q ++T F P + +P A+ TG Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMAAAERAGLK 139 Query: 117 SYRWS 121 + Sbjct: 140 RNPFH 144 >gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 221 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEV-FFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D +E + F KP + +PE++ G Sbjct: 31 VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + E + + + +I +N FD + + R Sbjct: 91 IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGFLQAAVKR---- 146 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + SF + AH Sbjct: 147 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQAAQISF-----------DGHQAHC 193 Query: 177 AKADVYATLALVWLIREKKPK 197 A D T L + K Sbjct: 194 ALYDTEKTTELFCAMVNKLKD 214 >gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] Length = 452 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 227 LILDTETTGFYYQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 282 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + AE + + + I +N FD + F R Sbjct: 283 DEFLQDKPK-YAEIADALFAYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 330 >gi|295840123|ref|ZP_06827056.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|197696983|gb|EDY43916.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 243 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 33/120 (27%), Gaps = 6/120 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +D E+ G DV R A V R E EA + Sbjct: 5 KQRYCAFDIESTGVDVETARIVT-ACVAQVRGGAL---PETRSWLADPSIEIPDEATAVH 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT +A +G E I + N R+D R+ + Sbjct: 61 GITTDRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPTLA 120 >gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC 3773] Length = 177 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + A V + E ++ + I GI Sbjct: 2 NFVAMDFET--ANHEKHSAVSMALAVVRQN-EVVDEFYSL---IQPETYFSARNTAIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q + E ++ F+ ++ +N FD + ++ Sbjct: 56 REQDVAQAPK-FPEIWAQVSPLFTEDK--LVVAHNAPFDHGVLQGTLAYYGIEA------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD +R+ + KL +A GI + H+A D A Sbjct: 107 ---PHYMLLDTVRSSRQLF----------PHFRNHKLNTVAENLGITLDHHHNALDDAVA 153 Query: 184 TLALVWLIREK 194 ++ + Sbjct: 154 AAQILIYQDQH 164 >gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] Length = 234 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 8 YDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +D ET G D D+ + A V +DR +K + P D EA + ++ Sbjct: 2 FDTETTGLDPKTGDKMVEAAFVELIDR--KKTGRFLHLYFDPKRDV--PDEAREVHNLSR 57 Query: 66 QKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + L G V F+++I F + +N +FD+ + F Y Sbjct: 58 DELVRLSGGRVFGHFAQQIIDFIK---GATLVAHNSKFDEGFFDMEFQHAGY 106 >gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae] gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae] Length = 233 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G D+ + A D + + + DP+A+ + GIT Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGITE 158 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + + S ++ +N+ + F D W + Sbjct: 159 TELSNEP-TWTQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213 Query: 126 N 126 Sbjct: 214 C 214 >gi|257438116|ref|ZP_05613871.1| exonuclease KapD [Faecalibacterium prausnitzii A2-165] gi|257199447|gb|EEU97731.1| exonuclease KapD [Faecalibacterium prausnitzii A2-165] Length = 183 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 17/134 (12%) Query: 1 MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 M + V++D E G + V++D +++ + +P Sbjct: 1 MPRNLVLFDLEWNIGYKPYNFNYHGVQQTFRGEIIEIGAVKIDEDANVLDTFSIHL-RPR 59 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 +TG+T G + + +F D + Sbjct: 60 IFRTLQHHIAKVTGLTQADL-DRGEP---IVQGLRRFMQWCGPDAEFAEWGMDDVPVLKQ 115 Query: 109 IFYRNFYDSYRWSW 122 + D R + Sbjct: 116 NLFLCNLDESRPTQ 129 >gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275] gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9] gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli] gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica] gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1] gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7] gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275] gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9] gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica] gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli] gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1] gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7] gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2] gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Dublin] Length = 289 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G D+ + A D + + + DP+A+ + GIT Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGITE 158 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + + S ++ +N+ + F D W + Sbjct: 159 TELSNEP-TWTQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213 Query: 126 N 126 Sbjct: 214 C 214 >gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 178 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 29/188 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +FV D+ET + A A V V + I+ D + V + Sbjct: 1 MM-NFVAMDFETANQHPASA--CSLALVLVRES-KIIDRFYTV---INPQMAFDAQQVKV 53 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT + AE +I F ++ +N RFD + R Sbjct: 54 HDITAEDVAGAP-TMAEVWPKIQPLFQ--PGMLVAAHNARFDCNVMKQSLARYG------ 104 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + Y + G +++L ++ G+E + H+A +D Sbjct: 105 -------------IAEPHYLVLDSLKVSRELEPGLDNYQLNTVSDLLGVELWHHHNALSD 151 Query: 181 VYATLALV 188 A ++ Sbjct: 152 SEACAGIL 159 >gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans ATCC 51888] gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 237 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 29/197 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D ET G D DR + +I + F + EA + GI+ Sbjct: 4 IVLDTETTGLDPKTGDR---LIEIGGIEIINRIPTGVEFHRFINPERNVPMEAQNVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + E R F I+ +N +FD + + + Sbjct: 61 TEFLIGKPL-FREVYRDFLAFI---GDDILVIHNAQFDVNFLNHELGLVGEKPLSF---- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182 + D L + R + P+ L L GI+ H A D Sbjct: 113 -DRVVDTLALARRRHPAGPN--------------SLDALCKRYGIDTSQRTKHGAIVDSL 157 Query: 183 ATLALVWLIREKKPKLF 199 + + ++ F Sbjct: 158 LLAEVYVELLGERQATF 174 >gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays] Length = 458 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 26/188 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D ET + +F V V R+ ++ S D LPDP A GI Sbjct: 15 IVFLDVETS-TPPCV--LLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTA-RSNGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + ++ G+N + FD + F + Sbjct: 71 TRGTLADAP-PFGDVADMVYDVL--HGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQ---- 123 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L ++ + A KL LA G+ H + DV Sbjct: 124 -PKAMIDTLPLLTQCF------------GPRAGDMKLASLANYFGLG-KQRHRSLDDVKM 169 Query: 184 TLALVWLI 191 + + Sbjct: 170 NIDVFKNC 177 >gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis] gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis] Length = 461 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 41/257 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV++D ET G D + D Q A + + S +F EA GI Sbjct: 155 TFVMFDTETTGLDTSNDVIIQLAC--ASENGDPLHSRYMF----PGGRSIGSEATNAHGI 208 Query: 64 TPQK------ALRDGVVEAEFS------RRIHQFFSVPNT------CIIGYNNIRFDDYY 105 + L+DG A+ + R F + + C++ + FD Sbjct: 209 SEAFIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRL 268 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA- 164 N R+ G+ D + V+RA + + +SFK + L+ Sbjct: 269 LINCLKRHNL--MNEFISTGSVLLDSVKVVRAS--------KKQEKSPFDSSFKKESLSA 318 Query: 165 ---LANGIEHVNAHDAKADVYATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLIDIQ 218 G+ HDA+AD A ++ I + + ++ ++ +++ Sbjct: 319 LHGHLFGVPIDRPHDAQADACALSKVLMKIPKNMSTSVIINNFMKQMKHSQEVKNRKFTL 378 Query: 219 NMTPLVHVSGMFGASRS 235 P+ A Sbjct: 379 WGLPVSLFMIEKIAKSG 395 >gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1] gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 236 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G + D+ V ++ I+ + F +V I G+ P Sbjct: 42 VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AL G AE + F ++ ++ ++ + + + R +S + Sbjct: 100 S-ALAAGCDPAEALLDLLDFM--GDSPVLAFH-----APFDQRMLARALKESLGHRLQSV 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L M + L D G++ H A AD T Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198 Query: 186 ALVWLIREKKPKL 198 L ++ + + Sbjct: 199 ELALILFSQARRQ 211 >gi|255324960|ref|ZP_05366068.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|255298020|gb|EET77329.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] Length = 98 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF 44 FV+ D ET G + DR + A VR D + ++S Sbjct: 31 FVVIDTETTGFNKRYDRIIELAAVRADAYFNPVDSWHTLL 70 >gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1] gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1] Length = 226 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 29/200 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPEAVFI 60 V+ D ET G D Q A V + + E T +P + DP+A+ + Sbjct: 34 VVVDVETGGLQAETDALLQIAAVILRAE-EGTGRLYPAETHTCHVQPFEGARIDPKALEL 92 Query: 61 TGITPQKALRDGVVEAEFSRR----IHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114 GI P+ LR V E + + + Q N ++ +N FD + R Sbjct: 93 NGIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTG 152 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + + L + + A + A Sbjct: 153 FKRNPFHPFSSFDTATLGGLAYGQTVLAKAVK-----------------AAGIEWDAKEA 195 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I Sbjct: 196 HSAIYDAEKTAELFCAIVNC 215 >gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] Length = 226 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 67/265 (25%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 10 IIDTETCGL---QGGIVEIASVDV-VDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 62 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + + +N FD W Sbjct: 63 MVADKPWIE-DVIPQYY------GSEWYVAHNASFDRRV---------LPDMPGEW---- 102 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ P + +Q A + H A D Y T Sbjct: 103 -----ICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHH------HRALYDCYITA- 150 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 151 -ALLIDIMQTSGW-----------TADQMVDITGRPALLTT--FTFGKYRGKPVSEVAER 196 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 197 DPGYLRWLFNNLDNMSPELRLTLKH 221 >gi|255655351|ref|ZP_05400760.1| putative exonuclease [Clostridium difficile QCD-23m63] Length = 258 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 32/226 (14%) Query: 5 FVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 ++I+D E G D + Q +++D ++ I++ + KP Sbjct: 3 YIIFDLEFNQGFDKKFNKTISNKKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIYKEI 61 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 P +T I E +F S + + + YRN Sbjct: 62 HPFISRMTNIKDSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KELYRN 114 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 S S ++ + S LQ+ ++ Sbjct: 115 INYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELDEKM 163 Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + H+A D Y T + I + + K + + + + Sbjct: 164 SYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208 >gi|220915934|ref|YP_002491238.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] gi|219953788|gb|ACL64172.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] Length = 207 Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 13/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63 + D ET G D D V V + ++ + +P DP ++ + Sbjct: 19 YWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQL 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P +++ + + ++ + D + + + R Sbjct: 79 VPHDVATAPSLDSVLADV--DLRAREGALLV--HQASLDVAFLKRAYRRCGRRWPE---- 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + ++ P L G+ HDA D A Sbjct: 131 --PPVVDTVALLIKAAKRQRFVN--PDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVA 186 Query: 184 TLALVWLIREK 194 T L ++R + Sbjct: 187 TAELFLVLRRQ 197 >gi|296451339|ref|ZP_06893077.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296880311|ref|ZP_06904276.1| exonuclease superfamily protein [Clostridium difficile NAP07] gi|296259755|gb|EFH06612.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296428754|gb|EFH14636.1| exonuclease superfamily protein [Clostridium difficile NAP07] Length = 258 Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 32/226 (14%) Query: 5 FVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 ++I+D E G D + Q +++D ++ I++ + KP Sbjct: 3 YIIFDLEFNQGFDKKFNKTISNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIYKEI 61 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 P +T I E +F S + + + YRN Sbjct: 62 HPFISRMTNIKDSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KELYRN 114 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 S S ++ + S LQ+ ++ Sbjct: 115 INYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELDEKM 163 Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + H+A D Y T + I + + K + + + + Sbjct: 164 SYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208 >gi|254571599|ref|XP_002492909.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris GS115] gi|238032707|emb|CAY70730.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris GS115] Length = 213 Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 9/128 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYL 52 + V D E G D+ D + + D+ E ++ K + + Sbjct: 34 LQQPIVWIDCEMTGLDIYNDHIVEICCIITDQNLEVVDEGYESVIHYDNDVMSKMNEWCI 93 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +T + VE+E I Q PNT ++ N+I D ++ F + Sbjct: 94 EHHGTSGLTKKVLESTKTLPQVESELLSYISQHIE-PNTGVMAGNSIHMDKFFMYREFPK 152 Query: 113 NFYDSYRW 120 + Sbjct: 153 VIDYLFYR 160 >gi|167645985|ref|YP_001683648.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31] gi|167348415|gb|ABZ71150.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] Length = 296 Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 50/185 (27%), Gaps = 32/185 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G D D + A + R E E F E +TGI Sbjct: 43 LFVDVETTGLDTRRDEIIELAMIPFRYGLVGRIYEVMEPFHGYRQPARPISAEITALTGI 102 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ E ++ +N FD Sbjct: 103 DDAMVEGQ-SIDPEAVAA-----FAAPAALVIAHNASFDRRL------------------ 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + ++ Q +D+G KL LA G + H A D A Sbjct: 139 -----LERFSPVFQTKPWACSMSQIDWKDEGHEGVKLAYLAAGAGF-FYDRHRATNDCAA 192 Query: 184 TLALV 188 + L+ Sbjct: 193 AIELL 197 >gi|269966857|ref|ZP_06180930.1| oligoribonuclease [Vibrio alginolyticus 40B] gi|269828524|gb|EEZ82785.1| oligoribonuclease [Vibrio alginolyticus 40B] Length = 219 Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K D Sbjct: 44 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELAKMDDWCTNT 103 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + E + + +F I N+I D + Sbjct: 104 HTASGL----VERVRNSQISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDRRFLYKHMP 159 Query: 112 RNFYDSYRW 120 + Sbjct: 160 ELEEFFHYR 168 >gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145] gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145] Length = 458 Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 9/111 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++V + GIT Sbjct: 233 LILDTETTGFYYQDGDRIIEVGALEM-INRKLTGSSIHIYINPK---TPVGDSVNVHGIT 288 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + E E S+ + + + I +N FD + F R + Sbjct: 289 DEFLQDKPLFE-EISQVLFDYL---HGAEIIAHNATFDMNFLDMEFKRAGF 335 >gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 183 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 30/186 (16%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +F+ D+ET G + AG+ V R + +E+ + +P + I G Sbjct: 5 NFIAIDFETATG---KRASICE-AGICVVRDGKIVET-RSWLVRPQ-GNSYSYWNMQIHG 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P E I ++ ++ +N FD R+ + ++ Sbjct: 59 IRPNDTADSPE-FPEVWTEISKYLKDIP--VLVAHNAAFDIGCIRHSLELYGMEKLEITY 115 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +RA G L L I + H A D Sbjct: 116 ---------YCSLRAARKLYSFGCN-----------SLDYLCDQFRIPYGQHHRAGDDAE 155 Query: 183 ATLALV 188 L Sbjct: 156 MCARLF 161 >gi|221632413|ref|YP_002521634.1| putative DNA polymerase III, epsilon chain [Thermomicrobium roseum DSM 5159] gi|221156357|gb|ACM05484.1| putative DNA polymerase III, epsilon chain (EC ) [Thermomicrobium roseum DSM 5159] Length = 190 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 58/194 (29%), Gaps = 24/194 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET G + D+ + A +D + T V DP A+ + G++ Sbjct: 21 VILDTETTGIR-SQDQVIELA--VLDTHGNVLLETLV-----KPSCPIDPAALRVHGLSE 72 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E R + I+ YN R + + Sbjct: 73 AHLAHAP--EWPVVYRELRVIFDRARLIVTYNAPFD----------RRLIEQTCRCYGLS 120 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 MR ++ P + +L + GI H AH A AD A Sbjct: 121 LPDLSWDCAMRRFAEYAGP----PPTESWRNYHRLSEALQRLGIPHPGAHRAAADAEACR 176 Query: 186 ALVWLIREKKPKLF 199 LV + +P F Sbjct: 177 RLVRAMAAGQPLRF 190 >gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum] Length = 782 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 55/221 (24%), Gaps = 33/221 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET G + D + V + + + + PEA + + Sbjct: 403 ICFDLETTGFG-SEDSIIEVGAVELIDGCRTGLTFQSYA---KPKAPIHPEAAKVHNLNA 458 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +E + F ++ +N+ FD R+ Sbjct: 459 YLLSSAPPIEF----VLASFMDFVGDALLVAHNLAFDHRMLIQEMMRSKIPIN------- 507 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE---HVNAHDAKADVY 182 +++ + S+ L ++ I+ H A D Sbjct: 508 ------------RSKKCFCTMKYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSE 555 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 + + P +K + + PL Sbjct: 556 ILAIVYSHLTRIPPNY--ASLKLIDKMN-QAPWNQPQPQPL 593 >gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 163 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 28/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + V V R +S +P +Y + Sbjct: 1 MKDFVAIDFET--ANSERSSVCSIGIVIV-RNGVITDSFYSTI-QPEPNY-YSYWCTKVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T E ++I +N RFD+ + +F D Sbjct: 56 GLTKSDTEESP-CFHEIWKQIEPKI---GNLPFVAHNSRFDESCLKAVFRVYQMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 Y F + +L +A G N H A AD Sbjct: 107 --------------YPDYIFFDTLAAARRVLPHLPNHQLHTVAQECGYCLDNHHHALADA 152 Query: 182 YATLALV 188 A + Sbjct: 153 EACAHIA 159 >gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 190 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 32/190 (16%) Query: 15 RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74 D D+ + A +R D + +V K PE + +TGI G+ Sbjct: 1 LDPTKDQITEIAAIRTDL-IREYGRLDVRITK-NSGTKLTPEIINLTGINESMMRG-GIP 57 Query: 75 EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134 E + F S + ++ ++ + + R + Sbjct: 58 EELAIPLLACFMS--GSIVVAHH-----APFDLSFLARYLVEP----------------- 93 Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194 + + S L +A GIE H A ADV AT+ + ++ + Sbjct: 94 -----SSFVCTRVLSKLVEPGESASLAAVAERRGIELTGHHRAMADVEATVKIFQQLKAE 148 Query: 195 KPKLFEYLYD 204 L Y+ Sbjct: 149 ADALGIRYYN 158 >gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides clarus YIT 12056] gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides clarus YIT 12056] Length = 163 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V R E +++ +P +Y + Sbjct: 1 MENFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDNYYSLI-RPEPEY-YTYWNTRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T V + I + +N FD+ + + + Sbjct: 56 GLTLADTACAPV-FPTVWQEIAPRIE---GLTLVAHNKAFDE---------SCLKAVFRT 102 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D ++A G ++L +A G H A AD Sbjct: 103 YGMDYPDYDFRCTLQASR----------RAIKGLPDYQLHTVAAWCGYRLEQHHHALADA 152 Query: 182 YATLALVWLI 191 A + + Sbjct: 153 EACAWIARQV 162 >gi|111022071|ref|YP_705043.1| DNA polymerase III subunit epsilon [Rhodococcus jostii RHA1] gi|110821601|gb|ABG96885.1| DNA polymerase [Rhodococcus jostii RHA1] Length = 231 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 28/113 (24%), Gaps = 7/113 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +D ET G D R VD E + A + GI+ Sbjct: 9 ICAFDLETTGPDPTDARIVSACIAVVDAH-----HFESRTWLLDPEVPIPQGASDVHGIS 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFY 115 + A G A I + T + N +D R Sbjct: 64 TEYARAHGQDYATGYGEIREALHDAWTRDHAVVAFNASYDLTVMHTEGLRLGL 116 >gi|90018234|gb|ABD83930.1| hypothetical protein [Ictalurus punctatus] Length = 216 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 33/195 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V D ET G + + Q + + +R + D A +TG Sbjct: 32 ETLVFXDLETTGLNTSECDIVQLSAISGERSFNV---------YILPRCPIDHGASRVTG 82 Query: 63 ITPQ----KALRDG---VVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +T V E F ++G+N RFD I Sbjct: 83 LTIHSRKLLLHGQPMQTVPLREALTSFISFLKTFSRPVLVGHNCKRFDRPILLRIMTE-- 140 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 ++ + D ++ D L + R ++ Q+ + S++ A Sbjct: 141 FNLLKEFQDVVSAYLDTLLLSREMFMLQKYSQQFLVQYFLQKSYR--------------A 186 Query: 175 HDAKADVYATLALVW 189 HDA DV L Sbjct: 187 HDATEDVRTLQELFR 201 >gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E] gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 223 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F KP + +PE++ G Sbjct: 30 VIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGANINPESIKFNG 89 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E+E + Q II +N FD + R Sbjct: 90 IDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSFVMAAADRTKIK 149 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L +M A + AH Sbjct: 150 RNPFHPFSSFDTASLSGLMFGQTVLVKACQ-----------------AAHIAFDGKQAHS 192 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 193 ALYDTERTAELFCYMVNH 210 >gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T Length = 215 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 56/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + D Q ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E E I + N I +N FD + R Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L G + A Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGXDFDSTQA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAVLFCEIVNR 200 >gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 253 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A+ F I +N+RFD + + Sbjct: 126 YEMVENA-LSLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKYC 227 >gi|229593001|ref|YP_002875120.1| putative DNA poymerase [Pseudomonas fluorescens SBW25] gi|229364867|emb|CAY52927.1| putative DNA poymerase [Pseudomonas fluorescens SBW25] Length = 235 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 23/194 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V + S + P +V I G+ P Sbjct: 42 VVLDLETSGLNLNRDQVLSIGAVVI-EDGAVDFSQLFERTLQRAETKLSP-SVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E + F + + + FD + + + + Sbjct: 100 S-AIAAGSDPVEA---LLDFMAFVGDSPLLAFHAPFDQHMLCRALKDSLGYRLAHPFLD- 154 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D+ ++ G L D + H A AD AT Sbjct: 155 --VADIAPLLCPQAHIREAG--------------LDDWINHFNLHVGERHHASADALATA 198 Query: 186 ALVWLIREKKPKLF 199 L+ ++ + Sbjct: 199 ELMLILFSRARAQH 212 >gi|91228387|ref|ZP_01262313.1| oligoribonuclease [Vibrio alginolyticus 12G01] gi|91188028|gb|EAS74334.1| oligoribonuclease [Vibrio alginolyticus 12G01] Length = 181 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K D Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELVKMDDWCTNT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + E + + +F I N+I D + Sbjct: 66 HTASGL----VERVRNSQISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEEFFHYR 130 >gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri] gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri] Length = 289 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 13/121 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G D+ + A D + + + DP+A+ + GI Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGINE 158 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + + S ++ +N+ + F D W + Sbjct: 159 AELSNEP-TWNQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213 Query: 126 N 126 Sbjct: 214 C 214 >gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania mexicana MHOM/GT/2001/U1103] Length = 347 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 58/231 (25%), Gaps = 48/231 (20%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--------------------------------RVDRQ 33 V+ D ET G D + A ++ Sbjct: 108 VVVDLETTGFSATADEILEVACAELRWTPSSHTSSTGPKHTAPCAPSLGEQSVCGVIEGL 167 Query: 34 WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI 93 W + + +P+D A + GIT + + + + + Sbjct: 168 WTRGGRVFHRYVRPSDPRRISAAATAVHGITWETVQHC-SPWPVVASELVAYMVLVGAD- 225 Query: 94 IGYNNIRFDDYYSRNIFYRN-FYDSYRWSWDNGNSRWDLLDVMRAIYAFS-------PDG 145 G + ++ +R + ++R+ + R Y Sbjct: 226 -GPFSASAQLEAAQAGGHRAVQLPPLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCT 284 Query: 146 IQWPSRDDGATSFKLQDLALANGIE-----HVNAHDAKADVYATLALVWLI 191 QW + L L GI+ N HDA D T L + Sbjct: 285 RQWAQVAYPHLANNLDALCAFLGIDGAADRAANGHDALTDATLTALLFLQM 335 >gi|260893685|ref|YP_003239782.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] gi|260865826|gb|ACX52932.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] Length = 233 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 54/201 (26%), Gaps = 28/201 (13%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV +D ET G A D VR+ ++ F P +TGI Sbjct: 47 FVAFDLETTGLKPGAGDEIIALGAVRLR--GNELL-YPAFDQLVRPGRRVPPLVEKLTGI 103 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + A + S +G+N + ++ Sbjct: 104 SSGLLRYAP-PLASVLPFFLGYLSRGFP--LGFNVAFDLAFLNQA--------LKPHGRL 152 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D+ V RA+ A + ++A + H A D Sbjct: 153 SEQAVLDVWTVARALDARCEHAT-------------MDEIASFLKVNLEGRHTALGDALI 199 Query: 184 TLALVWLIREKKPKLFEYLYD 204 + +RE+ + Sbjct: 200 HARMWLKLRERLKEKGVRTLR 220 >gi|86157195|ref|YP_463980.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85773706|gb|ABC80543.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 207 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 13/191 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63 + D ET G D D V V + ++ + +P DP ++ + Sbjct: 19 YWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSIRAHQL 78 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P +++ + + ++ + D + + + R Sbjct: 79 VPHDVATAPSLDSVLADV--DLRAREGALLV--HQASLDVAFLKRAYRRCGRRWPE---- 130 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + ++ P L G+ HDA D A Sbjct: 131 --PPVVDTVALLIKAAKRQRFVN--PDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVA 186 Query: 184 TLALVWLIREK 194 T L ++R + Sbjct: 187 TAELFLVLRRQ 197 >gi|260361286|ref|ZP_05774394.1| oligoribonuclease [Vibrio parahaemolyticus K5030] gi|308114248|gb|EFO51788.1| oligoribonuclease [Vibrio parahaemolyticus K5030] Length = 148 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K D Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + E + + +F I N+I D + Sbjct: 66 HTASGL----VERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEEYFHYR 130 >gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno] gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno] Length = 164 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 51/192 (26%), Gaps = 28/192 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N FV D+ET + V V E +++ KPA ++ + Sbjct: 1 MNSFVALDFET--ANQYRSSVCSIGLVFV-ENNEIVDTYYQLI-KPAPNF-YSYFNTQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + E I + +N FD+ R + + Sbjct: 56 GLSQYDTENAPL-FPEVWTEILPKIKD---LPLVAHNSMFDEGCLREVLAYYALPQHTNP 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 F + KL ++ G + H A AD Sbjct: 112 -------------------FFCTLRAARKSLPQLVNHKLNTVSAYFGFDLKQHHHALADA 152 Query: 182 YATLALVWLIRE 193 A + + + Sbjct: 153 EACAHIALELFK 164 >gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185] gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185] Length = 534 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 51/184 (27%), Gaps = 27/184 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET + P VR R ++ PA D + GI Sbjct: 6 FTAIDFET--ANSYRGSPCSVGLVRF-RGGRPVDRAYWLIRPPAAASHFDAFNTQLHGID 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ R+ + I+ +N FD R + Sbjct: 63 ADTVRDQPS----WAGRLTEIVEFIGDDIVVSHNASFDIGVIRYACAADGI--------- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R D + A R S++L + A G E + H A AD A Sbjct: 110 AWPRIDFFCTLVAAR-----------RHLRLPSYRLPFVLDAYGAEVNDHHHALADAEAA 158 Query: 185 LALV 188 + Sbjct: 159 GRVA 162 >gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus] Length = 1002 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 22/184 (11%) Query: 14 GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGITPQKALRDG 72 G DR Q A +V S F + P ITGITP+ +G Sbjct: 755 GLRAKEDRVIQLAA-KVLGSENPRHSFAEF---VDPGAVGVPPRVREITGITPEILAANG 810 Query: 73 -VVEAEFSRRIHQFFS-----------VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + + S + +N +FD + + R + + Sbjct: 811 ARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMM 870 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA--TSFKLQDLALA-NGIEHVNAHDA 177 D G ++D +R + S + +FKL + G E +AH+A Sbjct: 871 GQDMG--VVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNA 928 Query: 178 KADV 181 DV Sbjct: 929 MGDV 932 >gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera] Length = 447 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + + +F + V R+ ++ES +P D L +V Sbjct: 10 IAFFDVETT-VPTRVGQGFAILEFGAILVCPRKLVELESYSTL-VRPHDLSLVSSLSVRC 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + + R++ G+N +RFD R + Sbjct: 68 NGITRDAVVSAP-NFRDIADRVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ H + D Sbjct: 120 PAPEPKGSIDSLALL------------TQRFGRRAGDMKMATLATYFGLGQ-QTHRSLDD 166 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 167 VRMNLEVLKYC 177 >gi|225457353|ref|XP_002281793.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 497 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + + +F + V R+ ++ES +P D L +V Sbjct: 10 IAFFDVETT-VPTRVGQGFAILEFGAILVCPRKLVELESYSTL-VRPHDLSLVSSLSVRC 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + + R++ G+N +RFD R + Sbjct: 68 NGITRDAVVSAP-NFRDIADRVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ H + D Sbjct: 120 PAPEPKGSIDSLALL------------TQRFGRRAGDMKMATLATYFGLGQ-QTHRSLDD 166 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 167 VRMNLEVLKYC 177 >gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera] Length = 535 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + + +F + V R+ ++ES +P D L +V Sbjct: 10 IAFFDVETT-VPTRVGQGFAILEFGAILVCPRKLVELESYSTL-VRPHDLSLVSSLSVRC 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + + R++ G+N +RFD R + Sbjct: 68 NGITRDAVVSAP-NFRDIADRVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ H + D Sbjct: 120 PAPEPKGSIDSLALL------------TQRFGRRAGDMKMATLATYFGLGQ-QTHRSLDD 166 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 167 VRMNLEVLKYC 177 >gi|167624484|ref|YP_001674778.1| exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] gi|167354506|gb|ABZ77119.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] Length = 205 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 51/185 (27%), Gaps = 20/185 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D E G D D+ + + ++ ++ ++ I GI + Sbjct: 25 VDLEMTGLDCQFDQILSIGLIPIHNGLLQVAKSQHLLVSIDGSV---GDSATIHGILDNQ 81 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + V + F ++ ++ D + + R + Sbjct: 82 LTQA-VSAKQAMAW---FLEQSKGHVLVAHHAPLDLCFLKTEIQRC------YGQTMQFV 131 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D + V + D I+ + +L G+ AH+A D A L Sbjct: 132 AIDTMAVEKKRLLRQHDVIK-------EGTLRLDACRQRYGLPVYTAHNAAVDALACGEL 184 Query: 188 VWLIR 192 + Sbjct: 185 LLAQM 189 >gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] Length = 256 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + F I +N+RFD + + Sbjct: 126 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKYC 227 >gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617] Length = 219 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D + + A V ++D + T F +P + PEA+ G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLPEALTFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N ++ +N FD + R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + A + AH Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACH-----------------AAGMAFDSAQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 183 ALYDTLQTADLFCELVNR 200 >gi|149194547|ref|ZP_01871643.1| Exonuclease [Caminibacter mediatlanticus TB-2] gi|149135291|gb|EDM23771.1| Exonuclease [Caminibacter mediatlanticus TB-2] Length = 204 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 46/190 (24%), Gaps = 20/190 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D D V V + + K +++ I ITP Sbjct: 31 VVIDTETTGLDTKKDEIISIGAVIVKNNKILLSKKFHIYVK--TTKKISNDSIKIHKITP 88 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 V E F N I+GY ++ + Sbjct: 89 TTLKNA-VETKEAIYEFLNFIQ--NRPIVGYYLEFDIAMINKLTKKYLGIKLSNRQIEVS 145 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +D + + + + H+A D T Sbjct: 146 SLYYD---------------KKIGIIPQKNVDLRFDSIMKDLNLPIFKKHNALNDAIMTA 190 Query: 186 ALVWLIREKK 195 + + K Sbjct: 191 LIYIKLNFKN 200 >gi|194365080|ref|YP_002027690.1| ribonuclease T [Stenotrophomonas maltophilia R551-3] gi|194347884|gb|ACF51007.1| ribonuclease T [Stenotrophomonas maltophilia R551-3] Length = 194 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52 M+ F V+ D ET G D + + A V ++ + T PA+ Sbjct: 1 MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLE 60 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 DP+++ +TGI A + + I+ +N FD + Sbjct: 61 IDPKSLEVTGIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFV 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + S +D + + Y G T A Sbjct: 121 NAAVARTGHKRNPFH---PFSVFDTVTLAGIAY--------------GQTVLARAANAAG 163 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 G + AH A D T L I Sbjct: 164 LGWDANEAHSAVYDTEQTARLFCTIAN 190 >gi|147921738|ref|YP_684442.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I] gi|110619838|emb|CAJ35116.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I] Length = 191 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 15/133 (11%) Query: 2 TNHFVIYDYETFGR-------DVALDRPAQFAGVR--VDRQWEKI---ESTEVFFCKPAD 49 + D E G V D P + VD + + I +S P Sbjct: 1 MEFLTVVDLEMTGLGKFDKANPVDDDYPVSIGIILAGVDEEGKAIRCLDSFHTLIRIPNP 60 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 + E I P+ E +I +F+ N R D ++ + Sbjct: 61 SKV--EETSIFHHIYPEDLEAAPKP-KEVCGQIRKFYEKHGEIPAAAWNHRVDRHFVDIL 117 Query: 110 FYRNFYDSYRWSW 122 F +S W Sbjct: 118 FKMGKMESPIRKW 130 >gi|92113107|ref|YP_573035.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM 3043] gi|91796197|gb|ABE58336.1| Exonuclease [Chromohalobacter salexigens DSM 3043] Length = 241 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 46/189 (24%), Gaps = 12/189 (6%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D V D +I + + ++ IT + Sbjct: 55 DMETTGLDEQRHAIVSIGLVPFD--LRRIRMAQRRYWIVRPPRPLSERSITFHHITHTEI 112 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + + + + ++ + + + + Sbjct: 113 EQAP----DLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIH------FPV 162 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D + + ++ S +L D G+ AH A D AT L+ Sbjct: 163 IDTMSLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELL 222 Query: 189 WLIREKKPK 197 + Sbjct: 223 QAQIAHHYR 231 >gi|311894879|dbj|BAJ27287.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 257 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 7/109 (6%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G DV DR A V Q + V A + GI+ ++ Sbjct: 15 FDTETTGVDVERDRIVSAALVV---QSAPAGTATVRTWLADPGVPIPESARAVHGISDER 71 Query: 68 ALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + ++ N +D R+ Sbjct: 72 VRAHGRPPRAVALEVARALAEQARAGVPLVVMNAP-YDLTLLDRELRRH 119 >gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] Length = 253 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIARFQSF-VKVKE---IPENITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ F I +N+RFD + + Sbjct: 126 YEMVENAP-SLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISRALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKYC 227 >gi|74196748|dbj|BAE43110.1| unnamed protein product [Mus musculus] Length = 237 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + V + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|27229283|ref|NP_077195.2| oligoribonuclease, mitochondrial precursor [Mus musculus] gi|78100196|sp|Q9D8S4|ORN_MOUSE RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|26357838|dbj|BAB25219.2| unnamed protein product [Mus musculus] gi|148693756|gb|EDL25703.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Mus musculus] Length = 237 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + V + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli] gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli] Length = 289 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 13/121 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G D+ + A D + + + DP+A+ + GIT Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGITE 158 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + + + S ++ +N + F D W + Sbjct: 159 TELSNEP-TWTQVAPALARLLS--GRHLVIFNPSFDSRMLRQTAS--AFGDQLSWWQEQN 213 Query: 126 N 126 Sbjct: 214 C 214 >gi|330685586|gb|EGG97232.1| exonuclease [Staphylococcus epidermidis VCU121] Length = 184 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ + FV D+ET + V+V + ES + + + Sbjct: 1 MSENAFVALDFET--ANGKRTSICSVGMVKVIEN-QITESFHTL---VNPNDYFSEQNIS 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P+ + QF + +N FD ++ Sbjct: 55 VHGIHPEDVASSPNFSY-VYPYMMQFIDQ---LPVVAHNAAFDMNVLHQSIQAIGLETPH 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ Q R + + L+ + ++ HDA Sbjct: 111 LTY--------------------FCSYQLAKRTVQSHRYGLKHMMDYYQLDFHGHHDALN 150 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D A + + + + L L Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173 >gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 240 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 21/194 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + DR A + +R + + P A + G+T + Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73 Query: 68 ALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +GV E I ++G+N FD R+ + R Sbjct: 74 LQANGVDPRVGLEEVAVIIAETMRRGVPVVGFNV-TFDFAILEAELARHDLPTLR--QRL 130 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYA 183 S ++D + L + A + + H+A+ADV A Sbjct: 131 EGSVEPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVSA 181 Query: 184 TLALVWLIREKKPK 197 TL L+ + E+ P+ Sbjct: 182 TLDLLGAMSERFPE 195 >gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 180 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 23/193 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +++D ET G D A V + T V P+A I Sbjct: 1 MQEKVLVFDTETTGFRSD-DEVLTLAVV------NGVGETMVDGMYAPARKAEWPDAERI 53 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+P + A + + F+ P+T ++GYN +++ R Sbjct: 54 NRISPAMVAGCDPILAH-REELERLFNAPDTLLVGYNTEFDIRLLAQSG--------IRI 104 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + N + R + G +W + A ++ + AH A AD Sbjct: 105 TNPNRHDVMLAFSAFRKVPDARRGGYRWWKLTECADYYR-------YDWGNTVAHGALAD 157 Query: 181 VYATLALVWLIRE 193 ATL ++E Sbjct: 158 TLATLFCYQKMKE 170 >gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] Length = 254 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D E+ G + + + V++ + +++I+ E F +TGI+ Sbjct: 72 FCVVDIESTGG-IKSGQILEIGAVKI-QNYKEIDRFESFV----KVESIPENITELTGIS 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F I +N+RFD ++ Y N + Sbjct: 126 LDMVENAP-SLKTVLNNFKLFLKDS---IFVAHNVRFDYHFISKAMYENDFGVLLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +D+ + + + L L IE H A +D A Sbjct: 178 --RRLCTIDLAKKC--------------IESPKYGLDALKEFLCIE-SKHHRALSDALAA 220 Query: 185 LALVWLI 191 ++ Sbjct: 221 SEILKYC 227 >gi|255743723|ref|ZP_05417681.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101] gi|255738584|gb|EET93971.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101] gi|259156231|gb|ACV96178.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ban5] gi|259156377|gb|ACV96322.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind5] Length = 301 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 15/237 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + V+V + +V +TG Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +A + + + ++ +N +FD + F + S+ S Sbjct: 113 ITDEIVQGQRIDDAMVASWL------SDDPLVVAHNAQFDRPFFEKRFAAFGHLSWACSA 166 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176 + + + + Y G + F L ++AN + + Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 + V +++ + NK+ R++ + + ++ ++ Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283 >gi|262393026|ref|YP_003284880.1| oligoribonuclease [Vibrio sp. Ex25] gi|262336620|gb|ACY50415.1| oligoribonuclease [Vibrio sp. Ex25] Length = 181 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K D Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELAKMDDWCTNT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + E + + +F I N+I D + Sbjct: 66 HTASGL----VERVRNSKISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEEFFHYR 130 >gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121] gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121] Length = 216 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 64/208 (30%), Gaps = 26/208 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +R+D E I T F +P + + A+ TG Sbjct: 14 VVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANLEKSALEFTG 73 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R VVEAE +I I+ +N FD + R Sbjct: 74 IDPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERCDIK 133 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + A A + AH Sbjct: 134 RNPFHPFSSFDTASLAGLAFGQTVLAKACE-----------------AAAIPFSNAEAHS 176 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 AK D T L I + +L + Sbjct: 177 AKYDTEKTAELFCEIVNRWKRLGGWSLA 204 >gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345] gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345] Length = 232 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 76/240 (31%), Gaps = 35/240 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYL 52 M N F V+ D ET G + D + A +++D + ++ T F +P + Sbjct: 10 MKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLALDKTLHFNIEPFEGAN 69 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106 +PEA+ TGI P LR V E E I + + II +N FD + Sbjct: 70 LEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFV 129 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN + + + +D + + L Sbjct: 130 TQAIERNALK---RTPFHPFATFDTAALAGLAIGHTV----------------LAKACAM 170 Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 GI N AH A D T L LI + L + + + + Sbjct: 171 AGIPFDNREAHSALYDTERTAELFCLIVNRWKALGGWPFIADETEEADTNSSEEKAEDYT 230 >gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 223 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 25/186 (13%) Query: 14 GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGV 73 G R + V + + F D EAV + GIT + + Sbjct: 6 GPHYQGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRDIQSEAVEVHGITDEFLVDKP- 61 Query: 74 VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133 E+ +F + +N FD + F D D+ D L Sbjct: 62 ---EYQDVHAEFLDFIKGAELVAHNAPFDTGFMDYEFG--MLDPTIGKTDDYCKVTDTLA 116 Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYATLALVWLI 191 + + I+ L L GI+ H H A D + L+ Sbjct: 117 MAKKIFPG--------------KRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLM 162 Query: 192 REKKPK 197 + Sbjct: 163 TGGQTS 168 >gi|68536400|ref|YP_251105.1| DNA polymerase III subunit epsilon [Corynebacterium jeikeium K411] gi|68263999|emb|CAI37487.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium K411] Length = 227 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 30/172 (17%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V + + + E+ +A + GIT + Sbjct: 17 FDLETTGVDPKTARIVTSALVTI--KGRERNDIEMLA---DPGVEIPQQASDVHGITTEY 71 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 G E + + +I YN S+ Sbjct: 72 VREHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRALE----------PSFTV 121 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +D V RA + L+ + G+ NAH+ Sbjct: 122 DGPVFDPYVVDRAKDQYR------------KGKRTLESVCQHYGVTLDNAHE 161 >gi|330448832|ref|ZP_08312478.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493023|dbj|GAA06975.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 376 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 31/180 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + + A V DR+ + + +T V + EA I GI+P Sbjct: 2 IYLDTETTGLDPDFNEVLEIAIV--DREGKILLNTLVKPQRNESW----HEAQVIHGISP 55 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + I+ + G + ++ + + + Sbjct: 56 EMVANAPTME-DLKPTIND-------IVKGQHVRIYNKEFDAA-------------FVDL 94 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 ++ VMR + F+ W +L + A AH A AD T Sbjct: 95 SAAEKTSCVMRDMAKFNGYWNNW---HCDYRLLRLSEAASKMSLSWDGTAHRALADTQMT 151 >gi|50914940|ref|YP_060912.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10394] gi|50904014|gb|AAT87729.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS10394] Length = 208 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 168 ARMTAAIYKSFLETDTN 184 >gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis C231] gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis 1002] gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis I19] Length = 453 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 26/172 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D ET + Q V+V + + E PA P + I GI Sbjct: 106 FAAVDVET--ANDDWGSICQIGVVKV-KDGVITDKCEWLCQPPAAINHFAPANIAIHGIR 162 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P +E + S + +N +FD Sbjct: 163 PNDVKTA-QPFSEC---FAEMLSFVGKLPLAAHNAQFDMTAFFRAAQ------------- 205 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +++ AF + + G + KL +A ++ N H+ Sbjct: 206 ------AENLVLPTVAFGCSLALSRAANLGTPNHKLPTVAKHLNVDLTNHHN 251 >gi|262384204|ref|ZP_06077340.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301311117|ref|ZP_07217046.1| exonuclease [Bacteroides sp. 20_3] gi|262295102|gb|EEY83034.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300831180|gb|EFK61821.1| exonuclease [Bacteroides sp. 20_3] Length = 181 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 28/205 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + ++ W ++S +P ++ I Sbjct: 1 MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + + E I + +N FD+ + Sbjct: 56 GLTAEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ D+ Y F + +LQ +A G + H+A AD Sbjct: 100 -------HEVYDLAYPKYPFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTRHHNAMADA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206 YA + + +K Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177 >gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728] gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum] Length = 188 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 11/112 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62 + D ET G D V E F +P D + D A+ + G Sbjct: 2 IFIDTETTGLDPTKCSVISVGAVVY-------EDPSSRFYMEARPDPDAMIDDGALAVNG 54 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRN 113 T + + ++++ ++ + NI FD + N Sbjct: 55 FTKEYLSSIANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMN 106 >gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] Length = 253 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 10/111 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F +TGIT Sbjct: 72 FSIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSFI----KVKEIPENITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + ++ + F I +N+RFD + + Sbjct: 126 YEMVENAPI----LAKVLSDFRLFLKDSIFVAHNVRFDYSFISKALNECGF 172 >gi|258512426|ref|YP_003185860.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479152|gb|ACV59471.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 218 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 23/193 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G A D+ A + + + + D +TG+T Sbjct: 30 YFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGLT 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ A+RDG E + + + + + +++R D + + + Sbjct: 90 PE-AMRDGEPL-EVA--LRRALELGAGRVWVAHHVRHDLGFLQRA-------------TD 132 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R L + + + A L + GI V H A ADV T Sbjct: 133 ALWRLRLRPLAMDTAVVAQVLAR------AARPLTLDEACEWLGIPVVGRHRADADVRMT 186 Query: 185 LALVWLIREKKPK 197 A+ E + Sbjct: 187 AAVWRKEMELCGR 199 >gi|33151672|ref|NP_873025.1| oligoribonuclease [Haemophilus ducreyi 35000HP] gi|38372407|sp|Q7VNN8|ORN_HAEDU RecName: Full=Oligoribonuclease gi|33147893|gb|AAP95414.1| oligoribonuclease [Haemophilus ducreyi 35000HP] Length = 183 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 15/130 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 H + D E G D DR + A + D+ + K + + Sbjct: 7 QHLIWIDLEMTGLDPNQDRIIEIATIVTDKDLNILAKGPVLAVHQPNTLLSKMNEWCIKT 66 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A G+ ++ + + E + F + I N++ D + Sbjct: 67 HTA---NGL-IERVKQSKLTERAAELQTLDFLKQWVMKGSSPICGNSVAQDKRFLYQYMP 122 Query: 112 RNFYDSYRWS 121 + Sbjct: 123 DLADYFHYRH 132 >gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590] gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590] Length = 186 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 30/195 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N FV D+ET + V+V + ES + + + G Sbjct: 6 NAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFHTL---INPQDYFSKKNINVHG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P+ + + + QF + + +N FD + + ++ Sbjct: 60 INPEDVIHAPQFDY-VFPYMLQFIAN---LPVVAHNAAFDMNVLHQSLKQAGIITPDLTY 115 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 Q R A + L+ + ++ HDA D Sbjct: 116 --------------------FCSYQLAKRTIDAPRYGLKHMMDFYNLDFHGHHDALNDAK 155 Query: 183 ATLALVWLIREKKPK 197 A + + + + Sbjct: 156 ACAMITFRLLQHYDD 170 >gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624] gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624] Length = 459 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P E+ I GI+ Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGESENIHGIS 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 V A+ + + ++ I +N FD + F R Sbjct: 290 DDFLKDKPV-YADIADTLFEYLKGAE---IIAHNATFDMNFLDMEFRRVGLP 337 >gi|298376895|ref|ZP_06986849.1| exonuclease [Bacteroides sp. 3_1_19] gi|298265879|gb|EFI07538.1| exonuclease [Bacteroides sp. 3_1_19] Length = 181 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 28/205 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + ++ W ++S +P ++ I Sbjct: 1 MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + + E I + +N FD+ + Sbjct: 56 GLSVEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ D+ Y F + +LQ +A G + H+A AD Sbjct: 100 -------HEVYDLAYPKYPFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTQHHNAMADA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206 YA + + +K Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177 >gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7] Length = 192 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 26/199 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET G + Q +G + +D + + F P + EA+ I Sbjct: 2 KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHSQCEIEEEALRICN 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ ++ E + S ++GYNN FD+++ + Sbjct: 59 VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + NG+ + + +I + T FK + +A A GI+ +A Sbjct: 111 ----AFFVQNGDHYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166 Query: 175 --HDAKADVYATLALVWLI 191 HDA D+ T + I Sbjct: 167 KLHDASYDIQLTKEIYNRI 185 >gi|261419662|ref|YP_003253344.1| hypothetical protein GYMC61_2250 [Geobacillus sp. Y412MC61] gi|319766479|ref|YP_004131980.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC52] gi|261376119|gb|ACX78862.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC61] gi|317111345|gb|ADU93837.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC52] Length = 242 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 30/201 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI D ET G D A + ++ + +TGI Sbjct: 62 FVIIDMETTGFSPEQGDEILAMAAAKT-VGGVVTDAYMTL---VKPEKPIPEHISALTGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + AE R F + +IGY+ D + R+ +R+ YR W Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFIAA--GVLIGYHIGH-DLAFLRHALWRH----YRQKWS 169 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + D GI H A DV A Sbjct: 170 GRFVDLQPMMTLIGHSC-----------------PTFDDALACYGIRCPRRHTADGDVEA 212 Query: 184 TLALVWLIREKKPKLFEYLYD 204 L ++ ++ + Sbjct: 213 MAKLWAILLDEFRQRGIDTLH 233 >gi|94499932|ref|ZP_01306467.1| exonuclease [Oceanobacter sp. RED65] gi|94427790|gb|EAT12765.1| exonuclease [Oceanobacter sp. RED65] Length = 224 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 53/190 (27%), Gaps = 20/190 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++ D ET G + V ++ K+ S + K + ++ I I Sbjct: 43 YLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKVKEGV---GQSATIHQIR 99 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + GV + + ++ +++ D + Y N Sbjct: 100 DCELQD-GVTINQAMAEVLTAMKDS---VLVFHHAPMDMAFLNK---------YCRQLYN 146 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L+D + + F+L G+ H+A D AT Sbjct: 147 APLLMPLVDTL----NIEKSRHMHNDQARKNGFFRLAHCRQRYGLSAHQGHNALTDAIAT 202 Query: 185 LALVWLIREK 194 L+ Sbjct: 203 AELLLAQVAH 212 >gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT] gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT] Length = 218 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 57/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +PE++ G Sbjct: 24 VIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPFEGANINPESLKFNG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR + E + + + +I +N FD + R Sbjct: 84 IDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAAAERTKIK 143 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + + D + SF + AH Sbjct: 144 ------RNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISF-----------DGKKAHS 186 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 187 ALYDAERTAELFCYMVNH 204 >gi|190573537|ref|YP_001971382.1| ribonuclease T [Stenotrophomonas maltophilia K279a] gi|190011459|emb|CAQ45077.1| putative ribonuclease T [Stenotrophomonas maltophilia K279a] Length = 216 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52 M+ F V+ D ET G D + + A V ++ + T PA+ Sbjct: 23 MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLE 82 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 DP+++ +TGI A + + I+ +N FD + Sbjct: 83 IDPKSLEVTGIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFV 142 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + S +D + + Y G T A Sbjct: 143 NAAVARTGHKRNPFH---PFSVFDTVTLAGIAY--------------GQTVLARAATAAG 185 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 G + AH A D T L I Sbjct: 186 LGWDANEAHSAVYDTEQTARLFCTIAN 212 >gi|30248106|ref|NP_840176.1| oligoribonuclease [Nitrosomonas europaea ATCC 19718] gi|37999372|sp|Q82Y15|ORN_NITEU RecName: Full=Oligoribonuclease gi|30179991|emb|CAD83986.1| Exonuclease [Nitrosomonas europaea ATCC 19718] Length = 181 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 +N+ + D E G + DR + A V D Q + V DD L D Sbjct: 5 SNNLIWIDMEMTGLNPGTDRIIEVALVVTDAQLNTLAEAPVLVVHQPDDILNGMDKWNQS 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + K + EAE R+ F + T + N+I D + + Sbjct: 65 THGKSGLIDKVKTSILSEAEVESRMLAFLELHVPAGTSPMCGNSICQDRRFLARSMPKLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 SYFHYR 130 >gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048] gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048] Length = 181 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 36/135 (26%), Gaps = 11/135 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + FVI D ET G D+ + + + + + EA I G Sbjct: 23 DQFVILDTETTGL-TLRDQIIDISVI--NLSGKIL-----LNSLVKPTINIPAEAASIHG 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + + + ++ YN N + S Sbjct: 75 ITNEMVHGAP-SWTAIYKELREV--TVGKTLLIYNAEFDLGMIENTCIANNVEFNNFKST 131 Query: 123 DNGNSRWDLLDVMRA 137 D +D R Sbjct: 132 CVMKMYADYVDSKRW 146 >gi|56419989|ref|YP_147307.1| hypothetical protein GK1454 [Geobacillus kaustophilus HTA426] gi|56379831|dbj|BAD75739.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 242 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 30/201 (14%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI D ET G D A + ++ + +TGI Sbjct: 62 FVIIDMETTGFSPEQGDEILAMAAAKT-VGGVVTDAYMTL---VKPEKPIPEHISALTGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + AE R F + +IGY+ D + R+ +R+ + Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFIAA--GVLIGYHIGH-DLAFLRHALWRH------YRQK 167 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 DL +M I P D GI H A DV A Sbjct: 168 WSGRFLDLQPMMTLIGHSCPT---------------FDDALACYGIRCPRRHTADGDVEA 212 Query: 184 TLALVWLIREKKPKLFEYLYD 204 L ++ ++ + Sbjct: 213 MAKLWAILLDEFRQRGIETLH 233 >gi|56605730|ref|NP_001008327.1| oligoribonuclease, mitochondrial precursor [Rattus norvegicus] gi|81910234|sp|Q5U1X1|ORN_RAT RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|55562847|gb|AAH86420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Rattus norvegicus] gi|149041578|gb|EDL95419.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_c [Rattus norvegicus] Length = 237 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + V + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23] gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23] Length = 163 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R E ++S +P +Y + + Sbjct: 1 MKDFAAIDFET--ANNERTSVCSVGVVIV-RDGEIVDSFYSLI-QPEPNY-YNYWCSQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T Q + E ++I + +N FD+ + +F D Sbjct: 56 GLTRQDTEEAP-IFPEVWKQIEPMIE---GLPLVAHNKAFDESCLKAVFRCYQMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 Y F + A + +L ++ G E N H A AD Sbjct: 107 --------------YPDYQFYCTCVASRKAFPNAANHQLHTISKLCGYELENHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|255015922|ref|ZP_05288048.1| putative DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7] Length = 181 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 28/205 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + ++ W ++S +P ++ I Sbjct: 1 MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ + + E I + +N FD+ + Sbjct: 56 GLSAEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ D+ Y F + +LQ +A G + H+A AD Sbjct: 100 -------HEVYDLAYPKYPFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTQHHNAMADA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206 YA + + +K Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177 >gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80] gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80] Length = 185 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 55/208 (26%), Gaps = 31/208 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F+ D+ET + V+V E +E+ + + Sbjct: 3 KNSFIALDFET--ANKKRTSICSVGMVKVVDN-EIVETFYTL---VNPHDYFSETHIHVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E + QF + + +N FD + Sbjct: 57 GIHPKDVKDAP-DFKEVFPYMLQFINQ---LPVVAHNAAFDMGVLHQSLKHLNIAVPSLT 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + Q R A + L+ L + HDA D Sbjct: 113 Y--------------------FCSYQLARRTIKAYRYGLKHLMNHYNLNFHGHHDALNDA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209 A + + + K + + + KN Sbjct: 153 KACAMITYRL-LKHYDSLQSVLQFHGKN 179 >gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 469 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 34/140 (24%), Gaps = 19/140 (13%) Query: 10 YETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKAL 69 ET G + DR + + + + + + G Sbjct: 11 LETTGANPLRDRITKIGVLEAEG-----DRVSTWSTLVNPQRPIPEFIQQLNGSRDATVA 65 Query: 70 RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRW 129 A+ + + I ++ + + F R + R Sbjct: 66 DAP-TFAQVAAELADRL--HGRLFIAHHARFN-YAFVKREFQRLG----------KSFRA 111 Query: 130 DLLDVMRAIYAFSPDGIQWP 149 D+L +R P+ + Sbjct: 112 DVLCTVRLSRKLFPEHQKHH 131 >gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 239 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 58/214 (27%), Gaps = 17/214 (7%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G R + + + +++F + D EA+ + GI+ Sbjct: 4 ICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYF---NPEREVDEEALKVHGIS 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ + +I ++ + +N FD + N Sbjct: 61 NEFLSDKPL-FSDKADKIIEYLKDAQ---LVIHNAEFDMGFLNYELSLCGKPKLETFIHN 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D ++ R +G L D + + H A D Sbjct: 117 --PVIDTRELAR------ENGFSSAVITLNKLYKDLVDESYKQNTDRE-LHGALLDAVML 167 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + + + ++F + Sbjct: 168 AKVFIKLNSGQNEIFLETSARSEASDDLGFSSQN 201 >gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis ATCC 33386] gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis ATCC 33386] Length = 195 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 38/207 (18%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-----IESTEVFFCKPADDYLPDP 55 M+ + V +D ET G + ++V+ E + + F+ + + Sbjct: 1 MSKNIVFFDVETNG--KVGSSVLSISAIKVNFNGEIQKWEKVGEYDRFYFR-NPGEAINM 57 Query: 56 EAVFITGITPQKALRD------GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 A+ + G+T + V + + F +T +NI+FD Sbjct: 58 GAINVNGLTDDVLEKKREGTIYPVHFKDDIESFYSFCQ--DTAHYVAHNIKFD------- 108 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 R+F + + + +++++A +WP KL + A I Sbjct: 109 --RSFIPFMLKNQFDTM--LENVEIVKAGINEYYGTYKWP---------KLNECARFYNI 155 Query: 170 EHVNA--HDAKADVYATLALVWLIREK 194 ++ H++ DV T + + + + Sbjct: 156 PFDDSSLHESLYDVLITFRVFYKMSKH 182 >gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct] Length = 209 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 49/181 (27%), Gaps = 20/181 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET D V V R + + +P D E++ I + Sbjct: 35 LDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 +E + R++ F + ++GY +R+ R D + S Sbjct: 93 LEGQLQLE-QALRQVLAFI--GDRPLLGYYLSFDVAVLNRH--LRQLLDRQLHNPSIEIS 147 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 V R D + LA A + H A D A + Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194 Query: 188 V 188 Sbjct: 195 F 195 >gi|28899597|ref|NP_799202.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633] gi|153840401|ref|ZP_01993068.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810] gi|260876662|ref|ZP_05889017.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034] gi|260902310|ref|ZP_05910705.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037] gi|31076785|sp|Q87L01|ORN_VIBPA RecName: Full=Oligoribonuclease gi|28807833|dbj|BAC61086.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633] gi|149745937|gb|EDM57067.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810] gi|308093946|gb|EFO43641.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034] gi|308110954|gb|EFO48494.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037] Length = 181 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K D Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + E + + +F I N+I D + Sbjct: 66 HTASGL----VERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEEYFHYR 130 >gi|330873568|gb|EGH07717.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 206 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 6/86 (6%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+ET G R + A V + Q +E + + Sbjct: 1 MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVELFQSLM---NAGVRIPAFIEGL 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF 86 TGI+ E + F Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV 81 >gi|300779647|ref|ZP_07089503.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533757|gb|EFK54816.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 238 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 10/113 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D+ET G D + V +D+ ++ E L + GI Sbjct: 20 YAVIDFETTGMR-DNDAIVEIGVVLLDKDLSVEDTWEAL---VNPHRLI--LNTDVHGIE 73 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G+ + + + ++ ++ Y R F R D Sbjct: 74 EDDV-DRGLTFPALAGYFKHLL---HGRTLVAHDATYEKRYLRYEFERWGMDD 122 >gi|257454146|ref|ZP_05619419.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60] gi|257448474|gb|EEV23444.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60] Length = 215 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 19/188 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDR--QWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 D E G + D V+V + I++ +P + + I G+ P Sbjct: 44 LDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIVIHGLRP 103 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +G+ E ++ N IIG+ F ++ + Sbjct: 104 IDV-DNGLSYDEMLTQLLPMLK--NRPIIGF----------CVDMDMAFLNAIAKPFLGV 150 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L+DV R L L I + AH+A D T Sbjct: 151 ELANKLVDVSR----LYQQNQHRHDPSQVGQLPHLNQLLEEYQIPRLPAHNALNDAIMTA 206 Query: 186 ALVWLIRE 193 L + + Sbjct: 207 MLFTHLMQ 214 >gi|255100360|ref|ZP_05329337.1| putative exonuclease [Clostridium difficile QCD-63q42] Length = 258 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 38/229 (16%) Query: 5 FVIYDYETFGRDVALD--------------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50 ++I+D E + D Q +++D ++ I++ + KP Sbjct: 3 YIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIY 58 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 P +T I E +F S + + + Sbjct: 59 KDIHPFISRMTNIKNSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KEL 111 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 YRN S S ++ + S LQ+ ++ Sbjct: 112 YRNINYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELD 160 Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + H+A D Y T + I + + K + + + + Sbjct: 161 EKMSYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208 >gi|167842269|ref|ZP_02468953.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia thailandensis MSMB43] Length = 292 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 47/182 (25%), Gaps = 33/182 (18%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + A + DR + +A I GIT Sbjct: 130 LFIDTETTGLD-FQAEIVEIAIL--DRAGALL-----LDTLVKPAMPIPADATAIHGITD 181 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A ++ + + + ++ FD+ R+ ++ G Sbjct: 182 AHVAGAPG-WASVGPQVAELLA---GRLWIAHHAAFDERLLLQTSRRHAVKVP--TFRLG 235 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + L D L D A G H A+AD Sbjct: 236 CTIELLGDWA-------------------GRRLSLADAATMLGAAPTTRHRARADAEQCR 276 Query: 186 AL 187 + Sbjct: 277 QI 278 >gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] Length = 188 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 48/191 (25%), Gaps = 29/191 (15%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F D ET G D DR + A V V + + ++ I I Sbjct: 8 FCAMDTETTGIDPMNGDRIVEVAIVPV-YKGRILYR-SIYHTLVNPKIRIPATIEKIHRI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +E + ++ F I+ ++ FD + Sbjct: 66 TNEDIENAPTIE-QVFGQMRSFMRRS---IMIFHRAEFDLTFIDISAKEIGIFP------ 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +D + LA G E H A D Sbjct: 116 ---PSIDYIDTREISEIIFGEKKALSW------------LAERFGFE-KPNHRALTDAIT 159 Query: 184 TLALVWLIREK 194 T L + K Sbjct: 160 TAKLFLKMTRK 170 >gi|156972480|ref|YP_001443387.1| oligoribonuclease [Vibrio harveyi ATCC BAA-1116] gi|166216591|sp|A7MZ48|ORN_VIBHB RecName: Full=Oligoribonuclease gi|156524074|gb|ABU69160.1| hypothetical protein VIBHAR_00112 [Vibrio harveyi ATCC BAA-1116] Length = 181 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P ++ + + T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELVKMDDWCTNT 65 Query: 62 GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + ++ V E + + +F I N+I D + Sbjct: 66 HTSSGLVERVRNSDVSEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMPELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|323143472|ref|ZP_08078155.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] gi|322416757|gb|EFY07408.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] Length = 321 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 45/212 (21%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQW---------EKIESTEVFFCKPADDYLPDPE 56 V D ET G D ++ + VRV + + E E Sbjct: 79 VFLDTETTGMDCNQEKIIELGMVRVTYSFDRKLMLSIDRIYDEFE------DPGKKIPLE 132 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +T IT + + + +I ++ +N +FD + Sbjct: 133 IQQLTHITDEMVAGH-RFDNDSVSQILA-----GRPLVVAHNAKFDRPFFDR-------- 178 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + +A S G+ W + D KL+ L G +AH Sbjct: 179 -------------RFPTLSDLSWACSLSGVNWDALGDNGR--KLEFLCQVRGW-FYDAHR 222 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 A D A L L+ + E L + K Sbjct: 223 AYDDCLALLWLMHIEPEAFEMLINSALRHEYK 254 >gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4] gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4] Length = 257 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + ++ T + +P + +PEA+ G Sbjct: 40 VVIDVETAGFNAQTDALLEIAVTLLKMDDNGDLVLDKTLHYHIEPFEGANLEPEALAFNG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + II +N FD + RN Sbjct: 100 IDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVTQAIERNALK 159 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + D + L GI N A Sbjct: 160 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACEIAGIPFDNKEA 200 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I K Sbjct: 201 HSALYDTERTAELFCHIVNK 220 >gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973] gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973] Length = 163 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R ++ +P +Y V + Sbjct: 1 MKDFAAIDFET--ANNERSSVCSVGLVIV-RNGAVADTFYSLI-QPEPNY-YSYWCVRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T V +E ++I + +N RFD+ R +F D +S Sbjct: 56 GLTHADTDAAPV-FSEVWKQIEPLIE---GLPLVAHNSRFDESCLRAVFRVYQMDYPDYS 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D L R ++ +L +A G + N H A AD Sbjct: 112 F------FDTLTAAR-------------RTFPHLSNHQLHTVATECGYDLKNHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIARKI 162 >gi|300310766|ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1] gi|300073551|gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + + D E G D DR + A V D + + V +D+ L +A Sbjct: 15 NLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELLDGMDAWNKGTH 74 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + V EA+ ++I +F + N+I D + + Sbjct: 75 GRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDRRFMVRGMPKLEEF 134 Query: 117 SYRW 120 + Sbjct: 135 FHYR 138 >gi|323486817|ref|ZP_08092135.1| exonuclease [Clostridium symbiosum WAL-14163] gi|323694961|ref|ZP_08109111.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum WAL-14673] gi|323399830|gb|EGA92210.1| exonuclease [Clostridium symbiosum WAL-14163] gi|323501051|gb|EGB16963.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum WAL-14673] Length = 335 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 29/238 (12%) Query: 2 TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 +++ D E G+D ++DR + V+++ + I +P Sbjct: 1 MGQYIVLDLEWNQSPLGKDGSMDRLPFEIIEIGAVKLNASLQIISEF-RRLIRPRVYRQM 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + +T ++ + +G EF + + +F + D + + Sbjct: 60 HFKISEVTHMSMDELNMEGE---EFGKAMEEFLAWCGDDYKFCTWGSMDLTELQRNMVYH 116 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D + ++R L + GI Sbjct: 117 GLDIPFRMPLLYYDLQKIYGLIRGDKQKD----------------SLDTVVEELGIAEDR 160 Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 H A D Y T ++ + + + YR I ++ VS M+ Sbjct: 161 PFHRALDDAYYTGRIMAEMDFYSMVEYVSVDYYRPPETEEDEIYLEFPGYAKFVSRMY 218 >gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] Length = 595 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 8/155 (5%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G + DR + V + E + + GI Sbjct: 368 LILDTETTGFEAQNGDRIIEVGIVEM-INRRFTGE--KLHVYINPKIEMGEEVIRVHGIH 424 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V E + I+ F + +N FD + + F R + Sbjct: 425 NAFLNDMPVFE-QVGEAIYDFLQGAE---LIAHNAGFDMSFLQAEFARLGLPDINQTVTV 480 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 +S + ++ + +F Sbjct: 481 TDSLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFH 515 >gi|213418624|ref|ZP_03351690.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 158 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 48/170 (28%), Gaps = 19/170 (11%) Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 + + D + EA+ I GIT + + + Sbjct: 1 VEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHGITNEMVAFAPA-WTDICGAV 52 Query: 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 + F + YN FD R + N S W + Sbjct: 53 EELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPWMLAAHSVCAM-------KLY 102 Query: 143 PDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYATLALVWLI 191 + P R +G KL D A G + AH A AD TL LV + Sbjct: 103 AEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGLVRAL 152 >gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides ATCC 33313] gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides ATCC 33313] Length = 177 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET V + ++ D D I GI Sbjct: 2 NFIAMDFET--ASAKRYSAVSLGLAVVRDN-KLVDEFYTL---IKPDSFFDKRNTRIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E +I QF ++ +N FD+ R D Sbjct: 56 TEADVRNAP-IFPEVWEQIQQF--YTPNQLVIAHNAPFDNGVLRETLTHYDIDL------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD +R P+ + KL +A A GI+ + H+A D A Sbjct: 107 ---PHYLSLDTVRTSRKLYPEL----------PNHKLNTVAAALGIDLKHHHNALNDTVA 153 Query: 184 TLALV 188 ++ Sbjct: 154 AAEIL 158 >gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus DSM 14838] gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus DSM 14838] Length = 164 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V E +++ +P +Y + Sbjct: 1 MENFAAIDFET--ANEQRTSVCSVGIVIVRE-GEIVDTYYSLI-RPEPEY-YTYWNTRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + + + I + +N FD+ + + + Sbjct: 56 GLTLADTAKAP-IFPTVWQEIAPLIE---GLPLIAHNKGFDE---------SCLKAVFRT 102 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++ + R G +++L +A G E H A AD Sbjct: 103 YSLDYPDYEFHCTLSTAR----------RRIKGLPNYQLHTVAAYFGYELEQHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI] gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI] Length = 1379 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 25/197 (12%) Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D ET G + P + + D +++ I + + KP +P Sbjct: 2 YIIFDTETTGLPKDYNAPINNIINWPRLVKISWGLYDEKFKLI-ELKDYIIKPECYEIPF 60 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + I GI+ + A+ G ++ ++ + N +N+ FD F+R Sbjct: 61 L-STKIHGISTKYAIEKGYKINYVLKKFNKIINKYN--FFIGHNVFFDIKIICAEFFRIK 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + ++ S + D L +L + A Sbjct: 118 KKIFLYKKKIIDT-----------KEKSINYCAIKIGKDKLKWPTLTELYKKLFNDTFIA 166 Query: 175 HDAKADVYATLALVWLI 191 HD+K+DV AT + + Sbjct: 167 HDSKSDVLATSKCFFEL 183 >gi|217970407|ref|YP_002355641.1| oligoribonuclease [Thauera sp. MZ1T] gi|217507734|gb|ACK54745.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 182 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + D E G + DR + A V D E I V D L D Sbjct: 5 PKTLIWLDMEMTGLEPDRDRIIEIAIVLTDEALEVIAEAPVIAVHQPDSVLDGMDEWNRN 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + + EA+ ++ F T + N++ D + Sbjct: 65 THGKSGLTARVRASTMSEADAEAQVLAFLRAHVPARTSPMCGNSVCQDRRFLARWMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AWFHYR 130 >gi|262198353|ref|YP_003269562.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262081700|gb|ACY17669.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 187 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 15/130 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 N + D E G D +R + A + D E + E + D Sbjct: 4 KNPLIWMDLEMTGLDPERERIIEIAVLITDNALEIVAEGPDLVVHQPESLLEQMDDWNRK 63 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 A +T ++ V EAE ++ F + N+I D + R Sbjct: 64 HHGASGLT----ERVRASQVSEAEAEAQVLAFLREHVKQGAAPLAGNSIHQDRRFLRRYM 119 Query: 111 YRNFYDSYRW 120 + + Sbjct: 120 PQIDDYLHYR 129 >gi|157961523|ref|YP_001501557.1| exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] gi|157846523|gb|ABV87022.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] Length = 228 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 49/177 (27%), Gaps = 20/177 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D E G + D+ + + ++ ++ ++ I GI + Sbjct: 48 VDLEMTGLNSQFDQILSIGLIPIRNGLLQVSHSKHLLVSIDGSV---GDSAVIHGIVDNQ 104 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + + + F ++ ++ D + + R + Sbjct: 105 LTQAVSPKLAMAW----FLEQTQGHVLVAHHAPLDLCFLKAEIQRC------YGQTIQFV 154 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + V + D I+ S +L G+ AH+A D A Sbjct: 155 AIDTMAVEKRRLLMQIDVIK-------EGSLRLDACRQRYGLPVYAAHNAAIDALAC 204 >gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 246 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G + R + + + F D L + EA I Sbjct: 9 IVLDTETTGMNKNGPHYYGHRIIEIGAIEM-INRRLTGR--CFHTYLKPDRLVEIEAFKI 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + E E + F I +N FD + N + Sbjct: 66 HGISDEFLFFQPTFE-EIMEKFINFIKGSELII---HNSVFDIGFINNEIQLCNKNLNNI 121 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 ++ S D L + R I+ L L+ GI+ H A Sbjct: 122 NYY--CSVIDTLKLARNIFPG--------------KRNNLDALSDRYGIDTTKRILHGAL 165 Query: 179 ADVYATLALVWLIREKKPKL 198 D + L+ + + Sbjct: 166 LDAEILSNVYLLMTGGQIPI 185 >gi|152981086|ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille] gi|151281163|gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille] Length = 195 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + V D E G D DR + A V D + VF +D+ L +A Sbjct: 21 NLVWVDMEMTGLDPDKDRIIEVAVVVTDANLNILGEGPVFAIHQSDEVLDGMDAWNKGTH 80 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + V EAE + +F + N I D + + Sbjct: 81 GRSGLIDRIKASTVTEAEAETALIEFLKKYVPSGKSPMCGNTICQDRRFMVRGMPKLEAF 140 Query: 117 SYRW 120 + Sbjct: 141 FHYR 144 >gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 245 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + L R + A V +RQ+ S ++ + D A+ + G+ Sbjct: 4 IVLDTETTGLECKLGHRIVEIAAVELCNRQF--TGSHFHYY--LNPERESDEGALQVHGL 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + E SR F S I +N FD + + Sbjct: 60 TMEFLQDKAK-FYEISREFLNFISDAELII---HNAPFDVGFLNHELG------------ 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181 L + + D ++ L L I++ H A D Sbjct: 104 -----LCNLKALDNYCSQITDTLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDA 158 Query: 182 YATLALVWLIREKKPK 197 + + + Sbjct: 159 ELLAEVYLAMTRGQES 174 >gi|291231281|ref|XP_002735595.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 217 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 20/207 (9%) Query: 5 FVIYDYETFGRDVA----------LDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53 ++ +D E D V +D E+ + +C+P Sbjct: 7 YLCFDLEATCVDPKCPANQVTEGFQPEIIDIGAVILDSNTLEEKGEFQS-YCRPVKHPTL 65 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 P + +T I+ + + R + + Sbjct: 66 QPFCLELTKISQETVDAADE-FPDVWGRFIDWMKSKGLKPGAETPNFQLVTDGPFDCGKY 124 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHV 172 + + + W + + R G KL D+ G + Sbjct: 125 LFIQFNNTSKLSFPHW------ARNFVELKTEYKSYKRLVGRRWPKLSDMLAGLGLLRSG 178 Query: 173 NAHDAKADVYATLALVWLIREKKPKLF 199 + H A AD ++ + + ++ + Sbjct: 179 SNHRALADAHSVADVTKTVLRRRGDKY 205 >gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA polymerase III [Nakamurella multipartita DSM 44233] gi|258555230|gb|ACV78172.1| Exonuclease RNase T and DNA polymerase III [Nakamurella multipartita DSM 44233] Length = 212 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 28/159 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AV 58 M + V D E G D+ D+ + A + D + D + + A+ Sbjct: 1 MNDRLVWVDCEMTGLDLGTDKLIEIAALVTDSDLNILGEGV--------DVVIHADDAAL 52 Query: 59 F-----IT------GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDD 103 +T G+T + V A+ I +F P + + N+I D Sbjct: 53 AAMPQVVTEMHAKSGLTD-RVRESTVTMAQAEQLVLDYIREFVPEPKSAPLAGNSIATDR 111 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 + D Y S L + Sbjct: 112 GFI--ARDMPLLDDYLHYRMVDVSSIKELCRRWYPRIYF 148 >gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185] gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183] gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175] gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185] gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183] gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175] Length = 223 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + I+ T F +P + +PEA+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + S + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L + GI N A Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAELFCHIVNR 200 >gi|139473144|ref|YP_001127859.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes str. Manfredo] gi|134271390|emb|CAM29610.1| putative exonuclease [Streptococcus pyogenes str. Manfredo] Length = 208 Score = 64.1 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 168 ARMTAAIYKSFLETDTN 184 >gi|111018425|ref|YP_701397.1| oligoribonuclease [Rhodococcus jostii RHA1] gi|123340872|sp|Q0SGU7|ORN_RHOSR RecName: Full=Oligoribonuclease gi|110817955|gb|ABG93239.1| oligoribonuclease [Rhodococcus jostii RHA1] Length = 199 Score = 63.7 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 56/204 (27%), Gaps = 36/204 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M + V D E G + D+ + A + D + + DD L Sbjct: 1 MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60 Query: 59 FIT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111 + G+T + + V AE +++ + T + N+I D + Sbjct: 61 KMHENSGLTDE-VRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFI--ARD 117 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 D+Y S L + E Sbjct: 118 MPDLDTYLHYRMIDVSSIKELSRRWYPRIYFG------------------------QPEK 153 Query: 172 VNAHDAKADVYATLALVWLIREKK 195 AH A AD+ ++ + R+ Sbjct: 154 GLAHRALADIRESIRELKYYRKTA 177 >gi|149041576|gb|EDL95417.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus] Length = 254 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + V + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] Length = 221 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEV-FFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D +E + F KP + +PE++ G Sbjct: 31 VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + E + + + II +N FD + + R Sbjct: 91 IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSFLQAAIKR---- 146 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + A + AH Sbjct: 147 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQ-----------AAQINFDGHQAHS 193 Query: 177 AKADVYATLALVWLIREK 194 A D T L + K Sbjct: 194 ALYDTEKTTELFCAMVNK 211 >gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 220 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%) Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M V+ D ET G V R + + +D I + F C + +A+ Sbjct: 1 MKE--VVLDTETTGISVKEGHRIVEIGCIELD---NLIPTKNRFHCYLNPERKVSEKALE 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 + G T + ++ + F I +N FD + N Sbjct: 56 VHGYTDEFLSEQKK-FSDIGEQFLAFIKDKRLII---HNAEFDLGHLNNE 101 >gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni IA3902] Length = 256 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPKNITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ F I +N+RFD + + Sbjct: 126 YEMVENA-SSLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKYC 227 >gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603] gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603] Length = 184 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ + FV D+ET + V+V + E+ + + + Sbjct: 1 MSENAFVALDFET--ANGKRTSICSVGMVKVIDN-QITETFHTL---VNPNDYFSEQNIN 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P+ + QF + +N FD ++ Sbjct: 55 VHGIYPEDVASSPNFSY-VFPYMMQFIDQ---LPVVAHNAAFDMNVLHQSIQDIGLETPH 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ Q R + + L+ + ++ HDA Sbjct: 111 LTY--------------------FCSYQLAKRTVQSHRYGLKHMMDFYQLDFHGHHDALN 150 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D A + + + + L L Sbjct: 151 DAKACAMITYRLLKHYDDLHSML 173 >gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492] gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36] gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492] gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36] Length = 163 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 54/193 (27%), Gaps = 34/193 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R E ++ +P +Y + Sbjct: 1 MKDFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDHYYSLI-RPEPEY-YTYWNTRVH 55 Query: 62 GITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G+T + E + RI + +N FD+ + Sbjct: 56 GLTLADTQDAPIFPVVWQEIAPRIE-------GLPLVAHNKAFDESCLKA---------- 98 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + + Y F G +++L +A+ G + + H A Sbjct: 99 ---------VFRTYCMDYPDYEFYCTLQASRRAIKGLPNYQLHTVAVCCGYQLEHHHHAL 149 Query: 179 ADVYATLALVWLI 191 AD A + + Sbjct: 150 ADAEACAWIAKQV 162 >gi|227504454|ref|ZP_03934503.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] gi|227199102|gb|EEI79150.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] Length = 214 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 20/195 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGI 63 + D ET D V + I+ + E +V I + Sbjct: 27 LLAVDMETTSLDPREGAIVSIGWVPI--NGGVIDLGGADYVLIKGATAGQIEQSVHIHML 84 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q + GV E E R+ + + + + + + R + Sbjct: 85 T-QDVVDAGVAEKEGISRLREALQ---GRALLAHFAALEVGFLKAACKRIY--------- 131 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R D++D +P +D +L + G+ + H+A +D A Sbjct: 132 GAAPRLDVVDTFALERRHMERMATYPRGED----LRLARVRQRYGLPNYGNHNALSDAQA 187 Query: 184 TLALVWLIREKKPKL 198 L +R + Sbjct: 188 CAELFLAMRHDLAGM 202 >gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016] gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016] Length = 208 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 49/181 (27%), Gaps = 20/181 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET D V V R + + +P D E++ I + Sbjct: 35 LDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 +E + R++ F ++GY +R+ R +D + S Sbjct: 93 LEGQLQLE-QALRQLLAFIGDRP--LLGYYLSFDVAVLNRH--LRQLFDRQLHNPSIEIS 147 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 V R D + LA A + H A D A + Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194 Query: 188 V 188 Sbjct: 195 F 195 >gi|302681013|ref|XP_003030188.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8] gi|300103879|gb|EFI95285.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8] Length = 208 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 8/124 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 V D E G D D+ + A + + E ++ + + L D G Sbjct: 19 IVWVDCEMTGLDHNKDKIIEIAVLITNGNLEIVDEGVEYIIRTDKSVLDGMDEWCTTQHG 78 Query: 63 IT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + L E+ I ++ T ++ N++ D + N R Sbjct: 79 KSGLTAACLASPHTTSSAESAVLAYIQKWVPTQRTAVLAGNSVHVDRMFLANEMPRLVDW 138 Query: 117 SYRW 120 + Sbjct: 139 LHYR 142 >gi|295094549|emb|CBK83640.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Coprococcus sp. ART55/1] Length = 216 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 53/196 (27%), Gaps = 33/196 (16%) Query: 5 FVIYDYETFGRDVA--------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 +V D+E D + V++D + +I+S + + KPA + Sbjct: 3 YVFVDFEMNMIDSEYKKEKKICKSEIIEIGAVKLDEDYNEIDSFKS-YVKPAYGTMAS-R 60 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNN--IRFDDYYSRNIFYRNF 114 + +TGIT A ++ + + N + + Sbjct: 61 IIKLTGITDDMVEDAP-SYAFAMGSFIEWCADADVIYAWSENDLRQLRKEARLKEYTHPG 119 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S W + + L + L D G A Sbjct: 120 LESIISRWKDFQKEYAKL-------------------IGTSRRISLSDAVFYLGENFQGA 160 Query: 175 -HDAKADVYATLALVW 189 HDA D T + Sbjct: 161 EHDALWDARNTAEVFK 176 >gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus SK58] gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus SK58] Length = 371 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 51/172 (29%), Gaps = 27/172 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET + P VRV R ++ E P DP V I GIT Sbjct: 6 FTAIDFET--ANGFRGSPCAVGAVRV-RDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGIT 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L A+ + F T ++ +N FD + + D + Sbjct: 63 EDRVLDAPR-FAQVYDELADFV---GTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEF-- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 L + R +Y S+ L A G HD Sbjct: 117 ----VCTLVLARRVYDL--------------PSYALPSAAREAGFTPGRHHD 150 >gi|226360543|ref|YP_002778321.1| oligoribonuclease [Rhodococcus opacus B4] gi|226239028|dbj|BAH49376.1| oligoribonuclease [Rhodococcus opacus B4] Length = 199 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 56/204 (27%), Gaps = 36/204 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M + V D E G + D+ + A + D + + DD L Sbjct: 1 MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60 Query: 59 FIT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111 + G+T + + V AE +++ + T + N+I D + Sbjct: 61 KMHENSGLTDE-VRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFI--ARD 117 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 D+Y S L + E Sbjct: 118 MPDLDTYLHYRMIDVSSIKELSRRWYPRIYFG------------------------QPEK 153 Query: 172 VNAHDAKADVYATLALVWLIREKK 195 AH A AD+ ++ + R+ Sbjct: 154 GLAHRALADIKESIRELKYYRKTA 177 >gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family [Micrococcus luteus NCTC 2665] gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus NCTC 2665] gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family [Micrococcus luteus NCTC 2665] Length = 381 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 51/172 (29%), Gaps = 27/172 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET + P VRV R ++ E P DP V I GIT Sbjct: 13 FTAIDFET--ANGFRGSPCAVGAVRV-RDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGIT 69 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + L A+ + F T ++ +N FD + + D + Sbjct: 70 EDRVLDAPR-FAQVYDELADFV---GTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEF-- 123 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 L + R +Y S+ L A G HD Sbjct: 124 ----VCTLVLARRVYDL--------------PSYALPSAAREAGFTPGRHHD 157 >gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195] gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195] gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678] Length = 223 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + I+ T F +P + +PEA+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + S + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L + GI N A Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAELFCHIVNR 200 >gi|297690289|ref|XP_002822552.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 1 [Pongo abelii] gi|332208258|ref|XP_003253217.1| PREDICTED: oligoribonuclease, mitochondrial-like [Nomascus leucogenys] Length = 237 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3] gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3] Length = 209 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 60/208 (28%), Gaps = 31/208 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52 M + F VI D ET G + D + A +R+D + T F P + Sbjct: 3 MKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEGAN 62 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106 + A+ TGI P R+ E + + Q N I+ +N FD + Sbjct: 63 IEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAGFL 122 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + L + + L Sbjct: 123 NAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSC-----------------LEAG 165 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREK 194 ++ AH A D T L I + Sbjct: 166 IPFDNEQAHSAAYDAERTAELFCSIVNR 193 >gi|150009317|ref|YP_001304060.1| putative DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC 8503] gi|256841885|ref|ZP_05547391.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|149937741|gb|ABR44438.1| putative DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC 8503] gi|256736779|gb|EEU50107.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 181 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 57/205 (27%), Gaps = 28/205 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + ++ W ++S +P ++ I Sbjct: 1 MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + + E I + +N FD+ + Sbjct: 56 GLTAEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 ++ D+ Y+F + +LQ +A G + H+A AD Sbjct: 100 -------HEVYDLAYPKYSFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTRHHNAMADA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206 YA + + +K Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177 >gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1] gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2] gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58] gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719] gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192] gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1] gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719] gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192] gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58] Length = 208 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 49/181 (27%), Gaps = 20/181 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET D V V R + + +P D E++ I + Sbjct: 35 LDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 +E + R++ F + ++GY +R+ R D + S Sbjct: 93 LEGQLQLE-QALRQVLAFI--GDRPLLGYYLSFDVAVLNRH--LRQLLDRQLHNPSIEIS 147 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 V R D + LA A + H A D A + Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194 Query: 188 V 188 Sbjct: 195 F 195 >gi|94311510|ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH34] gi|93355362|gb|ABF09451.1| oligoribonuclease [Cupriavidus metallidurans CH34] Length = 205 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 26/147 (17%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59 N+ V D E G DR + A V D + + V + P+AV Sbjct: 13 NNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVL-------VIHQPDAVLDAM 65 Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 G + +K + EA+ + F N + N+I D + Sbjct: 66 DNWNKGTHGRSGLIEKVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDRRFMAR 125 Query: 109 -----IFYRNFYDSYRWSWDNGNSRWD 130 + ++ + + RW+ Sbjct: 126 YMPKLESFFHYRNLDVSTLKELCKRWE 152 >gi|302563935|ref|NP_001180742.1| oligoribonuclease, mitochondrial [Macaca mulatta] gi|90080269|dbj|BAE89616.1| unnamed protein product [Macaca fascicularis] Length = 237 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|255306302|ref|ZP_05350473.1| putative exonuclease [Clostridium difficile ATCC 43255] Length = 258 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 38/229 (16%) Query: 5 FVIYDYETFGRDVALD--------------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50 ++I+D E + D Q +++D ++ I++ + KP Sbjct: 3 YIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YIKPTIY 58 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 P +T I E +F S + + + Sbjct: 59 KEIHPFISRMTNIKNSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KEL 111 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 YRN S S ++ + S LQ+ ++ Sbjct: 112 YRNINYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELD 160 Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + H+A D Y T + I + + K + + + + Sbjct: 161 EKMSYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208 >gi|224496106|ref|NP_056338.2| oligoribonuclease, mitochondrial precursor [Homo sapiens] gi|55637001|ref|XP_508768.1| PREDICTED: oligoribonuclease, mitochondrial isoform 2 [Pan troglodytes] gi|116242694|sp|Q9Y3B8|ORN_HUMAN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|62897961|dbj|BAD96920.1| small fragment nuclease variant [Homo sapiens] gi|79158846|gb|AAI07888.1| REXO2 protein [Homo sapiens] gi|85397890|gb|AAI05025.1| Small fragment nuclease [Homo sapiens] gi|85397892|gb|AAI05027.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens] gi|119587654|gb|EAW67250.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_b [Homo sapiens] gi|189065256|dbj|BAG34979.1| unnamed protein product [Homo sapiens] gi|219520365|gb|AAI43702.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens] Length = 237 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|325266418|ref|ZP_08133095.1| oligoribonuclease [Kingella denitrificans ATCC 33394] gi|324981861|gb|EGC17496.1| oligoribonuclease [Kingella denitrificans ATCC 33394] Length = 182 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59 N+ D E G + D+ + A + D+ + + V+ +D+ L +A Sbjct: 4 QNNLCWLDMEMTGLNPDSDKIIEIAMIITDKDLNVLAQSPVYAIHQSDEILNGMDAWCTA 63 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+T ++ EAE + + T + N I D + R Sbjct: 64 THARTGLT-ERVRASTHTEAEVEEALLAWMQEWIPAKTTPMCGNTIHQDRRFMVRYMPRL 122 Query: 114 FYDSYRW 120 + Sbjct: 123 EAYFHYR 129 >gi|262273269|ref|ZP_06051084.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262222642|gb|EEY73952.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 207 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 20/190 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET D A ++ + A L ++V I GI Sbjct: 31 VALDCETTSLDPHKAELVTIAATKIRGNTIVTSDPLTLSLR-APHSL-TEQSVKIHGIRH 88 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q GV E E + + +F N I+GY R + Sbjct: 89 QDLHD-GVTEKEAMQALIEF--AGNRPIVGYYIHYDKTILDRYTRKHLGF-------KLP 138 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 NS ++ D+ R + ++ + G+ HDA D + Sbjct: 139 NSTIEVSDIYRRKLE--------QILPNAYYDLSMEAIGHHLGLPLSGRHDALDDAISAA 190 Query: 186 ALVWLIREKK 195 + ++ Sbjct: 191 LIYIRLKYGD 200 >gi|255014610|ref|ZP_05286736.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 2_1_7] gi|293373643|ref|ZP_06619990.1| exonuclease [Bacteroides ovatus SD CMC 3f] gi|292631298|gb|EFF49929.1| exonuclease [Bacteroides ovatus SD CMC 3f] Length = 163 Score = 63.7 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R E ++ P +Y + + Sbjct: 1 MKDFAAIDFET--ANNQRSSVCSVGIVIV-RDGEITDTFYSLI-NPEPNY-YNYWCSQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V E R+I + +N FD+ + +F D Sbjct: 56 GLTRKDTDNAPV-FPEVWRQIEPLIE---GLPLVAHNRPFDEGCLKAVFRVYQMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 Y F + +L +A A G + N H A AD Sbjct: 107 --------------YPCYEFYDTLSASRRALPCLPNHQLHTVAEACGYQLKNHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B] gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B] Length = 214 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 62/194 (31%), Gaps = 30/194 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + I + + C +P + +P A+ TG Sbjct: 19 VVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEPSALEFTG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P+ LRD V EA I N I+ +N FD + R Sbjct: 79 IDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAASMRADIK 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + S +D + Y + L GI+ N A Sbjct: 139 RNPFH---PFSHFDTATLAGLAYGQTV----------------LAKACRTAGIDFDNNEA 179 Query: 175 HDAKADVYATLALV 188 H A D T L Sbjct: 180 HSAAYDAAKTAELF 193 >gi|88800702|ref|ZP_01116261.1| oligoribonuclease [Reinekea sp. MED297] gi|88776566|gb|EAR07782.1| oligoribonuclease [Reinekea sp. MED297] Length = 182 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 ++ + D E G + D+ + A + D+ + +D L D Sbjct: 4 KSNLIWIDLEMTGLNPETDQILEIATIVTDKDLNVLAEGPSLVIHQSDAVLDGMDEWCTT 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + +K + A+ F + N+I D + Sbjct: 64 HHGESGLTEKVRNSSISVAQAEAETLAFVEQWVEPGCSPLCGNSIWQDRRFLIRYMPALD 123 Query: 115 YDSYRW 120 + Sbjct: 124 SYCHYR 129 >gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6] gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6] Length = 169 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 31/192 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D+ET D D +V R E +++ P L ++ GIT Sbjct: 6 YVALDFET--ADYQPDSACAVGLAKV-RGGEVVDTLYSLIRPPRRRVLF----TWVHGIT 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + EF ++ F + +N FD N Sbjct: 59 WKDVQGSP-TFLEFWPQMASFLQ--GVTHLVAHNAPFDRRVLEACCQSNGI--------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +R R S KL + GI + H +D A Sbjct: 107 ALPDLPFVCTLRESR-----------RKLKLPSHKLDAVCRCCGIPLDHHHAG-SDAIAA 154 Query: 185 LALVWLIREKKP 196 ++ ++ + Sbjct: 155 ARILIYLQGESQ 166 >gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii] gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii] Length = 175 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V YD ET + +F V V R +++S +P+ L P +V Sbjct: 2 IVFYDVETT-VPEVKGQGYDILEFGAVVVSARGLGELDSFTTL-VRPSSLALVSPRSVSC 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E + R+H G+N +RFD + + Sbjct: 60 NGIVQDSLVGAP-SFLEIADRVHALL--HGRVWAGHNILRFD-NLRIKEAFAS----IGR 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D ++R + A + K+ LA G+ H + AD Sbjct: 112 AGPEAAGHIDTFPLLRKSF------------GQRAGNLKMATLASYFGLG-KQEHRSLAD 158 Query: 181 VYATLALVWLI 191 V + ++ L Sbjct: 159 VRMNIEVLKLC 169 >gi|254524060|ref|ZP_05136115.1| ribonuclease T [Stenotrophomonas sp. SKA14] gi|219721651|gb|EED40176.1| ribonuclease T [Stenotrophomonas sp. SKA14] Length = 194 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52 M+ F V+ D ET G D + + A V ++ + T PA+ Sbjct: 1 MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLE 60 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 DP+++ +TGI A + + I+ +N FD + Sbjct: 61 IDPKSLEVTGIILDHPFRLAKEEKAALDHIFVPVRAAMKKYGCQRAILVGHNAHFDLGFV 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + S +D + + Y G T A Sbjct: 121 NAAVARTGHKRNPFH---PFSVFDTVTLAGIAY--------------GQTVLARAATAAG 163 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 G + AH A D T L I Sbjct: 164 LGWDANEAHSAVYDTEQTARLFCTIAN 190 >gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 253 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + ++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTGG-VSKGEILEIGAAKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A+ F I +N+RFD + + Sbjct: 126 YEMVENAP-SLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R ++ + + +KL+ L G+E+ + H A D A Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220 Query: 185 LALVWLI 191 + Sbjct: 221 AEIFKYC 227 >gi|254974887|ref|ZP_05271359.1| putative exonuclease [Clostridium difficile QCD-66c26] gi|255092274|ref|ZP_05321752.1| putative exonuclease [Clostridium difficile CIP 107932] gi|255314014|ref|ZP_05355597.1| putative exonuclease [Clostridium difficile QCD-76w55] gi|255516694|ref|ZP_05384370.1| putative exonuclease [Clostridium difficile QCD-97b34] gi|255649792|ref|ZP_05396694.1| putative exonuclease [Clostridium difficile QCD-37x79] gi|306519894|ref|ZP_07406241.1| putative exonuclease [Clostridium difficile QCD-32g58] Length = 258 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 38/229 (16%) Query: 5 FVIYDYETFGRDVALD--------------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50 ++I+D E + D Q +++D ++ I++ + KP Sbjct: 3 YIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIY 58 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 P +T I E +F S + + + Sbjct: 59 KDIHPFISRMTNIKNSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGVGDL------KEL 111 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 YRN S S ++ + S LQ+ ++ Sbjct: 112 YRNINYHKLPSSSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELD 160 Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 + H+A D Y T + I + + K + + + + Sbjct: 161 EKMSYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208 >gi|238020295|ref|ZP_04600721.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147] gi|237867275|gb|EEP68281.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147] Length = 192 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + D+ + A + D+ + +EVF +D+ + D Sbjct: 4 QNNLCWLDMEMTGLNPETDKIIEVAMIITDKDLNVLAQSEVFAIHQSDEIMDNMDEWCTT 63 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+T + EAE +++ F + N I D + R Sbjct: 64 THARTGLT-ARVKASSYNEAEVEQKLLDFMGEWLPAKASPMCGNTIHQDRRFMVKYMPRL 122 Query: 114 FYDSYRW 120 + Sbjct: 123 EAFFHYR 129 >gi|6755877|ref|NP_036037.1| three prime repair exonuclease 2 [Mus musculus] gi|47606218|sp|Q9R1A9|TREX2_MOUSE RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5' exonuclease TREX2 gi|5731111|gb|AAD48777.1| 3'-5' exonuclease TREX2 [Mus musculus] gi|74354406|gb|AAI04385.1| Three prime repair exonuclease 2 [Mus musculus] gi|74355394|gb|AAI04386.1| Three prime repair exonuclease 2 [Mus musculus] gi|123212392|emb|CAM27430.1| three prime repair exonuclease 2 [Mus musculus] gi|148697953|gb|EDL29900.1| three prime repair exonuclease 2 [Mus musculus] Length = 236 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRV----------DRQW-----EKIESTEVFFCK 46 FV D E G +D A+ + V D ++ + C Sbjct: 8 ETFVFLDLEATGL-PNMDPEIAEISLFAVHRSSLENPERDDSGSLVLPRVLDKLTLCMC- 65 Query: 47 PADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + G R + F S C++ +N +D Sbjct: 66 --PERPFTAKASEITGLSSESLMHCGKAGFNGAVVRTLQGFLSRQEGPICLVAHNGFDYD 123 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R + + D L +R + G + G S+ L Sbjct: 124 FPLLCTELQRLGAHLPQDT-----VCLDTLPALRGLDRAHSHGTR----AQGRKSYSLAS 174 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 175 LFHRYFQAEPSAAHSAEGDVHTLLLIFLH 203 >gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC 43734] gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC 43734] Length = 214 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 47/172 (27%), Gaps = 30/172 (17%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G D R A V + + + E+ +A + GIT + Sbjct: 4 FDLETTGVDPKTARIVTSALVTI--KGRERNDIEMLA---DPGVEIPQQASDVHGITTEY 58 Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A G E + + +I YN S+ Sbjct: 59 AREHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRALE----------PSFTV 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 +D V RA + L+ + G+ NAH+ Sbjct: 109 DGPVFDPYVVDRAKDQYR------------KGKRTLESVCQHYGVTLDNAHE 148 >gi|328472277|gb|EGF43147.1| oligoribonuclease [Vibrio parahaemolyticus 10329] Length = 181 Score = 63.7 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K D Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + E + + +F I N+I D + Sbjct: 66 HTASGL----VERVRNSKISEQDAVTQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEEYFHYR 130 >gi|329767022|ref|ZP_08258550.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341] gi|328837747|gb|EGF87372.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341] Length = 616 Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 44/326 (13%), Positives = 103/326 (31%), Gaps = 44/326 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F + D E QF+ ++D+ +++IES ++ KP P + Sbjct: 1 MNKLFCVVDIELT----EEKEIIQFSATKLDQNFKEIESIN-YYIKPKKQV--SPFVTEL 53 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + + ++ ++ F I+ + + D + F+ + Sbjct: 54 TGINNDMLSEK-LYFEDVAKELYDFIKE---DILVCHGLPSDYVILKKRFHDVGIRYHAK 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179 D +++ R S++L DL+ + + + H+A Sbjct: 110 M------SLDTVELARLF-------------MPTQESYRLSDLSNSLALYSGDGYHNAAI 150 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV T+ L+ I ++ + + L + ID + + + + Sbjct: 151 DVQVTVELLKEISKRIANINSNNFK--KIEVLLEKIDYNTLKFSRYCKRIIRGKKIKKED 208 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 + + ++ + +F+S E K + I+ + K Sbjct: 209 FINFDG-----------VDFKKVSYNVNDNNFKDKFIMFSSISEKKYIDNFKIRNYVILK 257 Query: 300 CPILMPIDYCKKEHFERWGIDHKRCL 325 K ++ ++ + L Sbjct: 258 EKSNYVPLNVFKLFPKKEDLNLDKLL 283 >gi|285018765|ref|YP_003376476.1| ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas albilineans GPE PC73] gi|283473983|emb|CBA16484.1| probable ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas albilineans] Length = 217 Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 56/211 (26%), Gaps = 39/211 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G D + A + + D + T PA + Sbjct: 17 MSRRFRGYLPVVVDVETGGFDWNRHALLEIAVIPIEMDAAGKLSPGDTASAHVVPAPGTV 76 Query: 53 PDPEAVFITGITPQKALRDG----VVEAEFSRR----IHQFFSVPNT--CIIGYNNIRFD 102 DP+++ ITGI L E E + I+ +N FD Sbjct: 77 IDPKSLEITGI----VLDHPFRLAKPEREALEHVFTPVRAAVKKYGCQRAILVGHNAHFD 132 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + R + + + L + + Sbjct: 133 LNFLNATVARCGHKRNPFHPFSVFDTVTLAGIAYGQTVLARAVQ---------------- 176 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 177 -AAGFEWSAADAHSAVYDTEQTARLFCKIAN 206 >gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC 43183] gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC 43183] Length = 163 Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 54/193 (27%), Gaps = 34/193 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V R E +S +P +Y + Sbjct: 1 MENFAAIDFET--ANEQRTSVCSVGVVIV-RNGEIADSYYSLI-RPEPEY-YTYWNTRVH 55 Query: 62 GITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G+T R V A E + RI + +N FD+ + +F D Sbjct: 56 GLTLADTSRSPVFPAVWQEIAPRIE-------GLTLVAHNKAFDESCLKAVFRMYGMD-- 106 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 Y F G ++L +A G H A Sbjct: 107 -----------------YPDYDFRCTLQASRRAIKGLPDYQLHTVAAWCGYRLEQHHHAL 149 Query: 179 ADVYATLALVWLI 191 AD A + I Sbjct: 150 ADAEACAWIARQI 162 >gi|269964116|ref|ZP_06178417.1| oligoribonuclease [Vibrio harveyi 1DA3] gi|269831150|gb|EEZ85308.1| oligoribonuclease [Vibrio harveyi 1DA3] Length = 181 Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K D Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + E + + +F I N+I D + Sbjct: 66 HTASGL----VERVQNSQISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEEYFHYR 130 >gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 177 Score = 63.3 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + A V V + ++ + I G+ Sbjct: 2 NFVAMDFET--ANREKHSAVSIALVIVRDN-QVVDKFYSL---IKPETTFSSYNTAIHGL 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q E + I FF+ ++ +N FD+ + D Sbjct: 56 HRQDVADAPK-FPEVWQTISPFFTENK--LVVAHNASFDNSILKGTLQYYDIDE------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD ++ P+ KL +A GI + H+A D A Sbjct: 107 ---PHYLLLDTVQTSRKLFPNFEN----------HKLNTVAGNLGITLDHHHNALDDAVA 153 Query: 184 TLALVWLIREK 194 ++ Sbjct: 154 AANILIYESNH 164 >gi|297530374|ref|YP_003671649.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3] gi|297253626|gb|ADI27072.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3] Length = 242 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 13/132 (9%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FVI D ET G D A + ++ + +TGI Sbjct: 62 FVIIDMETTGFSPEQGDEILAMAAAKT-VGGVVTDAYMTL---VKPEKPIPEHISALTGI 117 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + AE R F + +IGY+ D + R+ +R+ YR W Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFIAA--GVLIGYHIGH-DLAFLRHALWRH----YRQKWS 169 Query: 124 NGNSRWDLLDVM 135 + + Sbjct: 170 GRFVDLQPMMTL 181 >gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5] Length = 72 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G D +DR + G+ + + +T + P D P+A+ + GIT Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61 Query: 66 QKALRD 71 + Sbjct: 62 EFLKDK 67 >gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3] gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3] Length = 223 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 70/211 (33%), Gaps = 30/211 (14%) Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + ++ T + +P + +PEA+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEIAVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + II +N FD + RN Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + + + +D + + L GI N A Sbjct: 140 ---RTPFHPFATFDTATLAGLAIGHTV----------------LAKACSIAGIPFDNNEA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDY 205 H A D T L LI + L + Sbjct: 181 HSALYDTERTAELFCLIVNRWKALGGWPLAT 211 >gi|74214051|dbj|BAE29442.1| unnamed protein product [Mus musculus] Length = 228 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 30 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 89 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + V + F P C + N++ D + + Sbjct: 90 EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 149 Query: 114 FYDSYRW 120 + Sbjct: 150 MKHLHYR 156 >gi|114562985|ref|YP_750498.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB 400] gi|114334278|gb|ABI71660.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 238 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK------PADDYLPDPEAV 58 FV D+ET G D + V + + FC+ +++ Sbjct: 48 FVALDFETTGLDSQKNSIISIGLVPF--------TLQRIFCRKAKKWYLNPKDKLQEDSI 99 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + + Q + ++ + + + + + Sbjct: 100 IIHGITHSDLQDAP----DLLLILEQLLNELAGKVVVVHYRHIERDFLDHTLRMLINEGI 155 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 D + + + G+ + S +L + + HDA Sbjct: 156 V------FPVIDTMQIEANVQREKSQGLFNFFKRKRTESIRLANSRERYHLPAYAPHDAL 209 Query: 179 ADVYATLALVWLIREKK 195 D AT L+ + Sbjct: 210 TDAIATAELLQAQIKYH 226 >gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87] gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87] Length = 184 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M ++ FV D+ET + V+V + ES + Sbjct: 1 MADNAFVALDFET--ANGKRTSICSVGMVKVINN-QITESFYTL---VNPFDYFTETNIN 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P+ E + QF + + +N FD ++ Sbjct: 55 VHGIRPEDVEDAPSFEY-VYPYMLQFINE---LPVVAHNAAFDMNVLHQSLKSLNIETPS 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ Q R A + L+ L ++ HDA Sbjct: 111 MTY--------------------FCSYQLAKRTIDAYRYGLKHLMNHYQLDFHGHHDALN 150 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D A + + + + L L Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173 >gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469] gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469] gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253] gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227] Length = 220 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 64/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V V + + +P D P+A+ I IT Sbjct: 4 VIDTETCGL---QGGIVEIASVDV-VDGKIT-NPMSHLVRP--DRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E + + +N FD W Sbjct: 57 MVADKPWIE-EVIPHYY------GSDWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRHL------WPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ +A Sbjct: 145 -ALLIDIMNVSGW-----------TAEQMANITGRPALLTT--FTFGKYRGKAVSEIAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|215405762|ref|ZP_03417943.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|215413638|ref|ZP_03422306.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 94_M4241A] gi|215448050|ref|ZP_03434802.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210] gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis 94_M4241A] gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis 94_M4241A] gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis W-148] Length = 329 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA DV Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|260198755|ref|ZP_05766246.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T46] gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] Length = 319 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA D Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans ATCC 49185] gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185] gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185] Length = 186 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 22/196 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G Q +G+ + +++ F+ KP EA+ I G Sbjct: 2 KILFVDTETGGI-TERSALIQLSGIV--QIGKEVAEEFNFYIKPFPGSEVTDEALKIQGR 58 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 T ++ E E + + + + ++G N+RFD RN Sbjct: 59 TREEVETYD-SEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNG-- 115 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + LD ++ I A Q + KL+ GIE AHD Sbjct: 116 ---EKYLFSYIQATTLDPLQWIAAL-----QLLKKIPVLKDNKLETWCNHFGIEL-KAHD 166 Query: 177 AKADVYATLALVWLIR 192 + D+ AT AL + Sbjct: 167 SLEDIKATKALTKKMM 182 >gi|215424954|ref|ZP_03422873.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T92] gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] Length = 329 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA D Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|219559793|ref|ZP_03538869.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T17] gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] Length = 284 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA D Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|215432688|ref|ZP_03430607.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] Length = 347 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA D Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus] gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus] Length = 223 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 59/199 (29%), Gaps = 29/199 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + + + A + +++ +++ F K + PEA+ + Sbjct: 20 VVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFPGAILQPEALALNK 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + N II +N FD + R Sbjct: 80 INPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAATERTN-- 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 DN + D + L GI A Sbjct: 138 ---NIQDNPFHPFVTFDTAALSGLVFGQTV-------------LSKACEYAGIIFDKNKA 181 Query: 175 HDAKADVYATLALVWLIRE 193 H A D T L + Sbjct: 182 HSALYDAEKTAILFCTLVN 200 >gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025] gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 282 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 64/215 (29%), Gaps = 29/215 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D ET + + Q V + E + + + DP V I GI Sbjct: 2 KFVVLDVET--ANPRMSSICQIGLVTFEGGVEVAAESHL----IDPEDHFDPVNVAIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + E R+ + ++ + FD + + + SW Sbjct: 56 TAAAVVGEP-TFREVYGRVCDLTA---GTVVACH-THFDRVALSRVCELHALPTLSCSW- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD R + + + L +LA GI HDA D A Sbjct: 110 --------LDTARVAR--------RAWVEFSKSGYGLSNLARHFGI-TFQHHDALHDARA 152 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 ++ E+ N+ + ++ Sbjct: 153 AGLILARAIEETGHDPSEWIRLCNQATRQDRQTLR 187 >gi|296216233|ref|XP_002754546.1| PREDICTED: oligoribonuclease, mitochondrial-like [Callithrix jacchus] Length = 237 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97] gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Tokyo 172] gi|260184632|ref|ZP_05762106.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CPHL_A] gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CPHL_A] gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium bovis AF2122/97] gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Tokyo 172] gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CPHL_A] Length = 329 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA D Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|114562725|ref|YP_750238.1| exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] gi|114334018|gb|ABI71400.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 229 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 53/197 (26%), Gaps = 20/197 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D E G D D+ V + ++ + + ++ + GI + Sbjct: 46 IDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISGSV---GQSATVHGIVDNQ 102 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 + AE F S I+ ++ D + + R F Sbjct: 103 LHMA-LTLAEAIDW---FLSKTKGYILVAHHAPLDIQFIQQQLIRCF------GQSIPLV 152 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 D L + + ++ S +L + +AH+A D + L Sbjct: 153 FIDTLAIEKKRCLMQQPVLK-------EGSLRLNASRTRYRLPVYSAHNALIDALSCAEL 205 Query: 188 VWLIREKKPKLFEYLYD 204 + + + Sbjct: 206 LLAQVSAMGDIKKLSVK 222 >gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 235 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ I+ ++ F D +V I G+ P Sbjct: 42 VVLDLETTGLNLNKDQVLSIGAVVIEDGA--IDFSQQFERTLQCDKQKLGPSVLIHGLAP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G AE +F ++ ++ ++ + ++ R D + Sbjct: 100 S-AIAAGSDPAEALLAFMEFV--GDSPLLAFH-----APFDSHMLGRALKD--YLGYRLQ 149 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +S D+ D+ + L + ++ + H+A AD AT Sbjct: 150 HSFLDVADLAPMLCP-----------QANLRKSGLDEWIDWFKLQVFDRHNASADALATA 198 Query: 186 ALVWLIREKKPKL 198 L ++ + + Sbjct: 199 ELALILFSRARQQ 211 >gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155] gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223] gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155] gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223] Length = 223 Score = 63.3 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + I+ T F +P + +PEA+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + S + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L + GI N A Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAELFCHIVNR 200 >gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] Length = 330 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA D Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|74152556|dbj|BAE42568.1| unnamed protein product [Mus musculus] Length = 224 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 26 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 85 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + V + F P C + N++ D + + Sbjct: 86 EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 145 Query: 114 FYDSYRW 120 + Sbjct: 146 MKHLHYR 152 >gi|323498776|ref|ZP_08103762.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323316138|gb|EGA69163.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 210 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 20/193 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D +V I I Sbjct: 30 YVSLDCETTSLDPNRAELVTIAAAKIIDNRIITSRP--FEVRLRAPQSLDSNSVKIHQIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + G+ E + ++ +F N ++GY+ + + Sbjct: 88 HKDLVD-GIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L+ + + N HDA D + Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLEAICKHLDLPMQNKHDALQDAISA 189 Query: 185 LALVWLIREKKPK 197 + + + Sbjct: 190 ALVFVRLTKGDLP 202 >gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395] gi|326198375|gb|EGD55559.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395] Length = 199 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 10/130 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M + V D E G DV D+ + A + D + D+ L Sbjct: 1 MQDKLVWIDCEMTGLDVGSDKLIEIAALVTDSDLNILGEGVDVVIHADDEALAAMPDVVT 60 Query: 59 FIT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111 + G+T ++ V AE + + + + N+I D + Sbjct: 61 KMHADSGLT-EEVRASTVTLAEAEKAVLDYLREHITTAGAAPLAGNSIATDRGFIARDMP 119 Query: 112 RNFYDSYRWS 121 + Sbjct: 120 ELNAYLHYRM 129 >gi|163814599|ref|ZP_02205988.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759] gi|158450234|gb|EDP27229.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759] Length = 227 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVA--------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 +V D+E D + V++D ++ +I+S + + KPA + Sbjct: 11 YVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKS-YVKPAYGNMAS-R 68 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + +TGIT + E + +F + Y D R Sbjct: 69 IIKLTGITDEMLETAPSYE----DAVGRFIEWCADADVIYAWSENDLRQLRGETR----- 119 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-H 175 ++ ++ R + ++ + L D G A H Sbjct: 120 ---------LKQYTHPELERVFAKWQDFQKEYARMIGTSRRISLSDAVFYLGENFQGAEH 170 Query: 176 DAKADVYATLALVW 189 DA D T + Sbjct: 171 DALWDARNTAEVFK 184 >gi|218288682|ref|ZP_03492945.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] gi|218241040|gb|EED08216.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] Length = 218 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 23/193 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G A D+ A + + + + D +TG++ Sbjct: 30 YFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAVVRHDDVADVPSHIWELTGLS 89 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 PQ L G RR + + +++R D + + + Sbjct: 90 PQAVLD-GEPLDAALRR---ALELGAGRVWVAHHVRHDLSFLQR-------------VSD 132 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R L + + P L + G+ + H A ADV T Sbjct: 133 ALWRLRLRPLAIDTAVVGQALARAPRP------LTLDEACKWLGVPVIGRHQADADVRMT 186 Query: 185 LALVWLIREKKPK 197 A+ E + Sbjct: 187 AAVWRKEMELCMR 199 >gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401] gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 220 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD R W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFD---------RCVLPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ P +Q ++ H A D Y T Sbjct: 97 -----ICTMKLARRLWPGLKYSNMALYKTRKLNVQT------PPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 +P Y + S + L Sbjct: 191 YPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp. D12] Length = 129 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 9/122 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + +D ET G Q A + ++ E E+ + P D EA+ +T + Sbjct: 2 KILYFDTETTGL-TYRSTIIQLAAI-IEIDGEVKETVN-LYSAPFPDSDISEEALAVTKL 58 Query: 64 TPQKA--LRDGVVEAEFSRRIH----QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T ++ + E +I ++ + +N++FD RN YR Sbjct: 59 TREEIFRFDSPQLTCEMFTQILGKYVDKYNKNDKFTAVGHNVKFDLDMLRNWAYRCNEKF 118 Query: 118 YR 119 Sbjct: 119 IA 120 >gi|189402589|ref|ZP_02783395.2| YacC [Escherichia coli O157:H7 str. EC4401] gi|189354799|gb|EDU73218.1| YacC [Escherichia coli O157:H7 str. EC4401] Length = 191 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 14 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 66 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 118 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 S + +++ Y + G S E AH A AD T Sbjct: 119 LSVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 169 Query: 186 ALVWLIREKK 195 +V I Sbjct: 170 GVVNAIAAYH 179 >gi|168770686|ref|ZP_02795693.1| YacC [Escherichia coli O157:H7 str. EC4486] gi|189360489|gb|EDU78908.1| YacC [Escherichia coli O157:H7 str. EC4486] Length = 282 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 S + +++ Y + G S E AH A AD T Sbjct: 210 LSVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] Length = 231 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 44/219 (20%) Query: 1 MTNHF--------------VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVF 43 MT+ F V+ D ET G + D + A +++D + ++ T F Sbjct: 1 MTDTFDPNLLKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLSLDKTLHF 60 Query: 44 FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYN 97 +P + +PEA+ TGI P LR V E E I + + II + Sbjct: 61 NIEPFEGSNLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAH 120 Query: 98 NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 N FD + RN + + + +D + + Sbjct: 121 NAAFDHGFVTQAIERNALK---RTPFHPFATFDTAALAGLAIGHTV-------------- 163 Query: 158 FKLQDLALANGIEHVN--AHDAKADVYATLALVWLIREK 194 L GI N AH A D T L LI + Sbjct: 164 --LAKACAMAGIAFDNREAHSALYDTERTAELFCLIVNR 200 >gi|72162746|ref|YP_290403.1| exonuclease [Thermobifida fusca YX] gi|71916478|gb|AAZ56380.1| exonuclease [Thermobifida fusca YX] Length = 313 Score = 63.3 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 51/193 (26%), Gaps = 30/193 (15%) Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET G R + A VR+ + P GI Sbjct: 31 YAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTL-VDPRIKVTGQEF----HGI 85 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + AE + FS ++ +N+ F++ + + F Sbjct: 86 AQGDVVGAPRA-AELVAELCALFS---GAVVVGHNLDFENAFLTSEFVPAGLP------- 134 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +G L +R+ + S L G H A D A Sbjct: 135 DGLPGLCTLRTLRSQ-------VHLERYSLARASHALG------GDWPTGQHTALGDARA 181 Query: 184 TLALVWLIREKKP 196 L+ + P Sbjct: 182 CAQLLAELLHNAP 194 >gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2] Length = 459 Score = 62.9 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++ I GI+ Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + A+ + + + I +N FD + F R Sbjct: 290 DDFLKDKPL-YADIADTLFDYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337 >gi|331002829|ref|ZP_08326343.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413318|gb|EGG92686.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon 107 str. F0167] Length = 220 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 21/198 (10%) Query: 6 VIYDYETFGRDVALDRP-------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 ++ D E G + R + + +D +++I S + + KP + + Sbjct: 4 IVVDLEMNGIEK-KHRIFGCTMETIEIGAIMLDENYQEISSFKT-YVKPEYNSKIEKNIS 61 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT + E ++ + + I Y + D YD Sbjct: 62 RLTGITNNMVVNAPK-FNEALKKFSDWCLAADDDIRIYAWSKNDYKQIAKEIRLKRYDI- 119 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R + V + + + S KL L +A H A Sbjct: 120 ---------RPEESMVYLNEWNDFQEEFDTELGFERQISLKL-ALDMAGIDFLGREHSAL 169 Query: 179 ADVYATLALVWLIREKKP 196 D T L + R+++ Sbjct: 170 DDARNTAKLFHIFRDREM 187 >gi|224029725|gb|ACN33938.1| unknown [Zea mays] Length = 457 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 54/188 (28%), Gaps = 26/188 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D ET + +F V V R+ + S D LPDP A GI Sbjct: 15 IVFLDVETS-TPPCV--LLEFGAVVVCSRRLVDVSSFATLVRPANLDALPDPTA-RSNGI 70 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + ++ G+N + FD + F + Sbjct: 71 TRGTLADAP-PFRDVADMVYDVL--HGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQ---- 123 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L ++ + A KL LA G+ H + DV Sbjct: 124 -PKAMIDTLPLLTQCF------------GPRAGDMKLASLANYFGLG-KQRHRSLDDVKM 169 Query: 184 TLALVWLI 191 + + Sbjct: 170 NIDVFKNC 177 >gi|88703768|ref|ZP_01101484.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71] gi|88702482|gb|EAQ99585.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71] Length = 203 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 17/204 (8%) Query: 1 MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + + +++ D ET G V + +I + F +P EA Sbjct: 14 LPDDYIVLDTETTGLPDENGLPDIVTLGITVVRQ--REIAKSVEFKTRPK--KRISEEAQ 69 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT ++A F + +I +N FD R+ R + Sbjct: 70 SIHGITNEQAAE----FKSFDSQWSHMAEYLKDQLIVIHNASFDWPILRDHVVR---YNL 122 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 G A + PS D S +++L + H A+ Sbjct: 123 TTPSIKGVFCSQKAATPWAQAMDLSCSHRGPSVDTLTKSLGVENLRA----KKDGVHGAE 178 Query: 179 ADVYATLALVWLIREKKPKLFEYL 202 D ++ ++R + + Sbjct: 179 IDSQQAAQILEVMRRLEKSNTVWS 202 >gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] Length = 178 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A A V + + + + + V + GI Sbjct: 2 NFVAIDFET--AAPARASACSIALTVV-QNDQITDE---LYSLINPETKFHWRNVQVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E + FF+ ++ +N FD+ + R ++ Sbjct: 56 HEADVQDAP-TFPELWPILQPFFT--PDQLVVAHNANFDNSVLKKTLER---------YE 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD +R +F + KL L GIE + H+A D A Sbjct: 104 LNRLPYQTLDTLRTSRSFF----------PNYPNHKLNTLCDNLGIELEHHHNALDDSLA 153 Query: 184 TLALVWL 190 ++ Sbjct: 154 CANILLY 160 >gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 253 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G V+ + V++ + ++I + F K + +TGIT Sbjct: 72 FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPKNITELTGIT 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + A+ F I +N+RFD + + Sbjct: 126 YEMVENA-SSLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGF 172 >gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus DSM 4304] gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus DSM 4304] Length = 205 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 22/187 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET G + D V + + +P E++ G+ Sbjct: 10 FLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKH---ESMKFHGLD 66 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + +E + + ++ I D + + R + Sbjct: 67 PARLKTA-HDFSEIAEEVADLLR---GKVLVGYAIELDYGFLKRALKREG-------YKV 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N R D++D +A+ + L +LA +E H+A AD + T Sbjct: 116 ENKRIDVIDFEKAVCYILGE--------RPVGEMTLDNLAKKYRVEVSYRHNALADAFIT 167 Query: 185 LALVWLI 191 + + Sbjct: 168 AQIFQVQ 174 >gi|301782497|ref|XP_002926662.1| PREDICTED: oligoribonuclease, mitochondrial-like [Ailuropoda melanoleuca] gi|281353930|gb|EFB29514.1| hypothetical protein PANDA_016351 [Ailuropoda melanoleuca] Length = 237 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|291614958|ref|YP_003525115.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus ES-1] gi|291585070|gb|ADE12728.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus ES-1] Length = 235 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 31/214 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D V V + + F D E + + GI+ Sbjct: 44 VVVDVETTGLNLITDTLISIGAVAVVNGRIALG--DSFSVVLKQQESSDKENILVHGIS- 100 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A RDGV E ++ + +I ++ + R + + Sbjct: 101 STAQRDGVDPVEALLTFLEYLGK--SRLIAFHVAFDETMIRRAM----------RQYLGL 148 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + + LD+ + A + ++ L D I H+A AD AT Sbjct: 149 SFKHEWLDLAYVMPALNRSLMENHRV--------LDDWIGRFNIHIEARHNALADALATA 200 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 L + + +N N L D++ Sbjct: 201 QLFQIAISQA--------RNKNINDFEGLYDLEK 226 >gi|126165254|ref|NP_001075204.1| oligoribonuclease, mitochondrial precursor [Bos taurus] gi|158512836|sp|A2VE52|ORN_BOVIN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|126010762|gb|AAI33576.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Bos taurus] gi|296480277|gb|DAA22392.1| oligoribonuclease, mitochondrial precursor [Bos taurus] Length = 237 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 215 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 50/224 (22%), Gaps = 41/224 (18%) Query: 2 TNHFVIYDYETFGRD-VALDRP-------------AQFAG---VRVDRQWEKIESTEVFF 44 T+ V D ET G + VR D W+ ES + Sbjct: 10 TSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQ--- 66 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + ++ + GI+P + + F + ++ + Sbjct: 67 RRLQPGGPISKASIDVHGISPAELKTAP-SFRDVLDDFEAFI---GQDALLAHSAENEME 122 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 + + R + ++ R + P L L Sbjct: 123 FLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPG--------------SLDVLC 168 Query: 165 LAN---GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 + H A D T + + + Sbjct: 169 DRLWVDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSF 212 >gi|311263942|ref|XP_003129926.1| PREDICTED: oligoribonuclease, mitochondrial-like [Sus scrofa] Length = 237 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|54301691|ref|YP_131684.1| hypothetical protein PBPRB0011 [Photobacterium profundum SS9] gi|46915111|emb|CAG21884.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 191 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 25/194 (12%) Query: 3 NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 N V +D E GRD + +D +I + KP D + Sbjct: 9 NRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEI-SEFCT 67 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI PQ ++G AE R + F + + DD Sbjct: 68 ELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAW---GHDDRILHAECAAKGLKVP 124 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + N + L ++ ++ + H Sbjct: 125 FTEYINLAMIFRLQRHVKKKRCGQRAAMEIAGLE-----------------WEGRQHSGY 167 Query: 179 ADVYATLALVWLIR 192 D Y L + Sbjct: 168 VDAYNLARLTRTLF 181 >gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosus ATCC BAA-974] gi|316253975|gb|EFV13340.1| exonuclease [Segniliparus rugosus ATCC BAA-974] Length = 202 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 36/203 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E G D+ + A + D ++ ++D L + Sbjct: 5 KDRLLWIDCEMTGLRPGHDQLIEIAALVTDGDLNILDEGIDLVIHASEDKLAQMDEYVTN 64 Query: 62 -----GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G+T + AE + + F P T I+ N+I D + Sbjct: 65 MHASSGLTDA-VRAATLSLAEAEAKVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPE 123 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 D++ S L + N E Sbjct: 124 --LDAWLHYRMVDVSTIKELSRRWYPRIYF------------------------NQPEKG 157 Query: 173 NAHDAKADVYATLALVWLIREKK 195 AH A AD+ ++ + R Sbjct: 158 LAHRALADIVESIRELRYYRATA 180 >gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] Length = 458 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++ I GI+ Sbjct: 233 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 288 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + AE + + + I +N FD + F R Sbjct: 289 DNFLKDKPL-YAEIADTLFDYLKGAE---IIAHNATFDMNFLDMEFRRAGLP 336 >gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] Length = 183 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 29/189 (15%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M N +F+ D+ET + AG+ V + + +E+ + + +P D+ + Sbjct: 1 MNNINFIAIDFET--ATAKRSSICE-AGICVVKGGKVVET-KSWLVRPEDNR-YSYWNIQ 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GI PQ + I + ++ +N FD R+ + Sbjct: 56 IHGIRPQDTAYAP-TFPKVWEEITTYLRDCP--VLVAHNAAFDMSCIRHTLQLHHLPC-- 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D +RA G L L I + H A Sbjct: 111 -------PDIDYYCSLRAARHIYDFGCNT-----------LDYLCDHFSISYGTHHRAGD 152 Query: 180 DVYATLALV 188 D L Sbjct: 153 DAEMCARLF 161 >gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908] gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908] Length = 222 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 68/220 (30%), Gaps = 32/220 (14%) Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + ++ T F +P + +PEA+ TG Sbjct: 22 VVIDVETAGFNAQTDALLEIAVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFTG 81 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + II +N FD + R Sbjct: 82 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCALK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + D + L GI N A Sbjct: 142 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACAIAGIPFDNSEA 182 Query: 175 HDAKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLR 212 H A D T L LI + + D +K + Sbjct: 183 HSALYDTERTAELFCLIVNRWKALGGWPIAIDEESKEEQE 222 >gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289] gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289] Length = 163 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V R E ++ P +Y + Sbjct: 1 MQNFAAIDFET--ANFERSSVCSVGVVIV-RGGEVADTFYSL-VHPEPNY-YQWRCTQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V ++ RI + +N FD R F + Sbjct: 56 GLTREDTDDAPV-FSKVWARIEPLIE---GLPLVAHNAPFDKGCLRACFQ---------T 102 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++ LD +RA ++ +L ++ A G + H A AD Sbjct: 103 YRMDYPDYEFLDTLRAARRVF----------PRLSNHQLHTVSAACGYDLSRHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] Length = 178 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 59/208 (28%), Gaps = 30/208 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV++D ET + R + + V + + + D +T Sbjct: 1 MTRFVVFDVET--PNRENRRMSAIG-ITVIEDGKITDEFYSL---VNPETYFDYFNTRLT 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI E + I S ++ +N FD + YR Sbjct: 55 GICEDAVWNAP-TFPELWKTIAPMLSSG---LLVAHNAVFDMGVLKR-----CLRDYRIE 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + + R I S KL L GI + H A +D Sbjct: 106 WKPHVRYLCTVQMGRRIIPGM--------------SHKLNVLCDYYGINLAH-HQAASDS 150 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209 A ++ E + +Y+ Y N Sbjct: 151 RACAQILLRYLEVGADVRQYMRMYSLNN 178 >gi|270295360|ref|ZP_06201561.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274607|gb|EFA20468.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 163 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 34/193 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R E ++ +P +Y + Sbjct: 1 MKDFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDHYYNLI-RPEPEY-YTYWNTRVH 55 Query: 62 GITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G+T + E + RI + +N FD+ + Sbjct: 56 GLTLADTRDAPIFPVVWQEIAPRIE-------GLPLVAHNKAFDESCLKA---------- 98 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + + Y F G +++L +A G + H A Sbjct: 99 ---------VFRTYCMDYPDYEFHCTLQTSRRVLKGLPNYQLHTVAACCGYQLEQHHHAL 149 Query: 179 ADVYATLALVWLI 191 AD A + + Sbjct: 150 ADAEACAWIAKQV 162 >gi|293190188|ref|ZP_06608684.1| putative DNA polymerase III epsilon subunit [Actinomyces odontolyticus F0309] gi|292821004|gb|EFF79957.1| putative DNA polymerase III epsilon subunit [Actinomyces odontolyticus F0309] Length = 250 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 24/200 (12%) Query: 8 YDYETFGRDVALDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +D ET G DR A V + + +A + Sbjct: 11 FDTETTGVRALKDRLVTAALVLRIDGASYRSGVSAPDQVATWLT--DPGVEIPEQATAVH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT ++A RDG E + + N +D R+ S+ Sbjct: 69 GITTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFE 128 Query: 120 WSWDN-GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177 + D L + R + F L ++A G +AH A Sbjct: 129 ERLEGAPMLIVDPLVLDRKLDRFR------------KGKKTLTEMAPVYGAVASPDAHTA 176 Query: 178 KADVYATLALVWLIREKKPK 197 + DV TL ++ + +K P+ Sbjct: 177 EVDVAMTLDVLAGMVDKYPQ 196 >gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069] gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069] Length = 200 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 67/216 (31%), Gaps = 39/216 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----FFCKPADD 50 M F VI D ET G + A D + A V + + E+ F +P + Sbjct: 6 MKERFRGFFPVIIDVETGGFNAATDALLELAAVTT--GFNEQGKLEIKNSYHFNVEPFEG 63 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDY 104 + +A+ TGI P LR + E + + + + + N C++ +N FD Sbjct: 64 ANIEQKALDFTGIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSWFDLS 123 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 + R N + D + L Sbjct: 124 FLNAASERVDIK------RNPFHPFTSFDTASLSALMLGHTV-------------LAQAC 164 Query: 165 LANGIEHV--NAHDAKADVYATLALVWLIREKKPKL 198 GIE AH A D T L L+ + + Sbjct: 165 DLAGIEFSQKEAHSALYDATKTAELFCLLVNRANQF 200 >gi|194446846|ref|YP_002039036.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|218534571|ref|YP_002401101.1| putative exoribonuclease YacC [Escherichia coli S88] gi|194358598|gb|ACF57041.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|218349775|emb|CAQ87168.1| putative exoribonuclease YacC [Escherichia coli S88] gi|301130428|gb|ADK62229.1| putative exonuclease protein [Salmonella enterica subsp. enterica serovar Kentucky] gi|301130557|gb|ADK62357.1| putative exonuclease protein [Salmonella enterica subsp. enterica serovar Kentucky] gi|315285557|gb|EFU44999.1| exonuclease [Escherichia coli MS 110-3] gi|323948908|gb|EGB44804.1| exonuclease [Escherichia coli H252] Length = 282 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + +++ Y + G S E AH A AD T Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|282164255|ref|YP_003356640.1| hypothetical protein MCP_1585 [Methanocella paludicola SANAE] gi|282156569|dbj|BAI61657.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 198 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 34/196 (17%) Query: 2 TNHFVIYDYETFGR------DVAL-DRPAQFAGVRVDRQW--EKIESTEVFFCKPA-DDY 51 + D ET G + D P V D +++ + + D Sbjct: 1 MTLLCVIDTETTGLGKFDRANPGRVDYPISIGAVVADVNVVKKQVRCVDGMYSLIRIPDT 60 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + + I GI P++ + + F+ +G N FD ++ Sbjct: 61 SKADDTMLIHGILPEELDSAPAP-TQVCLDLKALFAKYEAMPVGAWNYHFDKHFVDV--- 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 L + R + P R + + G+ Sbjct: 117 -------------------LFRMARMLPPSLVWREMMPERYSRLERYVQNHVTHD-GVLR 156 Query: 172 VNAHDAKADVYATLAL 187 + AH+A D TLA+ Sbjct: 157 LEAHNAFNDCIRTLAV 172 >gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] Length = 308 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 50/184 (27%), Gaps = 30/184 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT F+ D ET + V+ ++++S + + I Sbjct: 1 MTYSFIALDVET--ANSFRGSLCSIGLVKF-IDGQEVDSFYTL---INPEEKFSSRNIKI 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I P+ + E + I F + I +N RFD Sbjct: 55 HAIKPEDVIGAP-TFPEVQKEIINFI---DNLPIVAHNARFDA---------YALQDVYL 101 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ + D + KL LA I + H+A +D Sbjct: 102 KYEIPFDNIQYFCSYQVCKIILTDL----------PNHKLHTLAEHFKISLDH-HNALSD 150 Query: 181 VYAT 184 A Sbjct: 151 ARAC 154 >gi|239927654|ref|ZP_04684607.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291435992|ref|ZP_06575382.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291338887|gb|EFE65843.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis ATCC 14672] Length = 204 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 16/195 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60 + D ET G D + A + + + VF+ D + DP+A+ I Sbjct: 10 SPPLAFVDTETTGLDPFQHDAWEIAVILRKPG--ETDQESVFY--LEPDLINADPKALEI 65 Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ++ + + +R +++ + ++ +N FD NIF R ++ Sbjct: 66 NRY-HERVKTEDWTWGKPQDVARDLYRLL---DGTVLIGSNPPFDADMIANIFGRYYWHP 121 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT--SFKLQDLALANGIEHVN 173 W + + A +P S+ L Sbjct: 122 KPWHYRTIDIAILAAGYRHGQAASGAYGGDFLFPDDYPQLPYSSYGLSRAVGVEPPAKDV 181 Query: 174 AHDAKADVYATLALV 188 AH A D + Sbjct: 182 AHTALGDARWARDVF 196 >gi|291295679|ref|YP_003507077.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM 1279] gi|290470638|gb|ADD28057.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM 1279] Length = 200 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 51/193 (26%), Gaps = 15/193 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G + + D+ V + + + +P E + I Sbjct: 15 NYWALDLETSGLEPS-DQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQAHHI 73 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + A+ + Q ++ + D + R + Sbjct: 74 LPSELEAAP-PLAQVLDEMEQRI---GQDVLILHFSSIDLSFLRQSYKTLGRPWP----- 124 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D ++ + GA L G+ H A D A Sbjct: 125 -KPLVVDTAVLLARLNERKRWLEPHSQPYPGA----LGAARATFGLPGHLEHHALWDALA 179 Query: 184 TLALVWLIREKKP 196 T L ++R + Sbjct: 180 TAELFLVLRHRLQ 192 >gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 215 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 50/181 (27%), Gaps = 20/181 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET D A ++ +I +++ F + A D +V I + Q Sbjct: 33 LDCETTSLDPQRAELVSIAATKIID--NRILTSQAFHIRLAAPPSLDSGSVRIHQLRHQD 90 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 G+ E + +++ F N ++GY+ + + + Sbjct: 91 LA-YGLSEPQALQQLLAFI--GNRPLVGYHIRYDKTILDIACRKQLGFPLPNPLIEVSQL 147 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 L+ F L + + + HDA D + Sbjct: 148 YHQQLEKQLPNAYF---------------DLSLAAICHHLDLPMQDKHDALQDAITAALV 192 Query: 188 V 188 Sbjct: 193 F 193 >gi|330721640|gb|EGG99654.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047] Length = 224 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 20/184 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F++ D ET D V V ++ E F K ++ I I Sbjct: 41 FLVVDLETTSLDADNGEVVSIGWVPVKSGSIQLADAEHHFSKVDAGV---GQSAVIHHIR 97 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + A + +++F +V ++ +++ D + + + + Sbjct: 98 DSELHDA----ASVTAIMNRFLAVAAGKVLVFHHAELDMAFLNRLSKKLY---------- 143 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 LL + + +L + HDA D AT Sbjct: 144 ---SVPLLAPIVDTLQLERRRLLRKESALAPGVLRLHRCRQRYNLPDYPGHDALTDAIAT 200 Query: 185 LALV 188 L+ Sbjct: 201 AELL 204 >gi|41152197|ref|NP_957038.1| oligoribonuclease, mitochondrial [Danio rerio] gi|37590357|gb|AAH59540.1| Small fragment nuclease [Danio rerio] Length = 199 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 7/122 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63 V D E G D+ D+ + A + D I DD L G Sbjct: 10 VWVDLEMTGLDIEKDQIIEMACIVTDSDLNVIAEGPNLIINQPDDLLDGMSDWCKEHHGK 69 Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + Q + + F P C + N++ D + + + + Sbjct: 70 SGLTQAVRDSHITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPQFMHHLH 129 Query: 119 RW 120 Sbjct: 130 YR 131 >gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Sphingomonas sp. SKA58] gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Sphingomonas sp. SKA58] Length = 312 Score = 62.9 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 12/140 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D ET G D DR + A R D I+ + D +TG+ Sbjct: 67 VAVDVETTGLDRETDRIIELAVQRFRFDALGRVIQVGVPRVWREDPGIPIDLRITKLTGL 126 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + + II +N FD + R W Sbjct: 127 MADDLAGQVIDETAAVEIL------SSADIIVAHNAAFDRPFID----RRLPAIAGKPWA 176 Query: 124 NGNSRWDLLDVMRAIYAFSP 143 + D L++ A + Sbjct: 177 CSMAELDWLELGFDGRALAH 196 >gi|149716526|ref|XP_001502237.1| PREDICTED: similar to Oligoribonuclease, mitochondrial precursor (Small fragment nuclease) (RNA exonuclease 2 homolog) [Equus caballus] Length = 237 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|118496683|ref|YP_897733.1| oligoribonuclease [Francisella tularensis subsp. novicida U112] gi|194323992|ref|ZP_03057767.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] gi|208780043|ref|ZP_03247386.1| exonuclease family protein [Francisella novicida FTG] gi|166216259|sp|A0Q414|ORN_FRATN RecName: Full=Oligoribonuclease gi|118422589|gb|ABK88979.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella novicida U112] gi|194321889|gb|EDX19372.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] gi|208744047|gb|EDZ90348.1| exonuclease family protein [Francisella novicida FTG] Length = 178 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 9/127 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60 ++ + D E G DV + + A + D+ I E +D+ L + + Sbjct: 5 DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIHQSDEILNSMNEWCIKV 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T Q+ + ++I +F + + N+I D + + Sbjct: 65 HCETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPKID 123 Query: 115 YDSYRWS 121 + Sbjct: 124 EYCHYRM 130 >gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 181 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A A V + + + + + V + GI Sbjct: 5 NFVAIDFET--AAPARASACSIALTVV-QNDQITDE---LYSLINPETKFHWRNVQVHGI 58 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E + FF+ ++ +N FD+ + R ++ Sbjct: 59 HEADVQDAP-TFPELWPILQPFFT--PDQLVVAHNANFDNSVLKKTLER---------YE 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD +R +F + KL L GIE + H+A D A Sbjct: 107 LNRLPYQTLDTLRTSRSFF----------PNYPNHKLNTLCDNLGIELEHHHNALDDSLA 156 Query: 184 TLALVWL 190 ++ Sbjct: 157 CANILLY 163 >gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] Length = 459 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++ I GI+ Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 289 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + A+ + + + I +N FD + F R Sbjct: 290 DDFLKDKPL-YADIADTLFDYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337 >gi|192360800|ref|YP_001983571.1| oligoribonuclease [Cellvibrio japonicus Ueda107] gi|190686965|gb|ACE84643.1| oligoribonuclease [Cellvibrio japonicus Ueda107] Length = 185 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60 N+ + D E G D D + A + D + VF D + + + Sbjct: 9 NNLIWIDLEMTGLDPDKDVIIEIATIVTDAHLNILAEGPVFAIHQPDSIMLNMDEWNTNQ 68 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + Q+ V + F I N+I D + R Sbjct: 69 HGKSGLTQRVRDSQVSIEQAEAATIAFLEQWVPKGKSPICGNSICQDRRFLVRGMPRLEN 128 Query: 116 DSYRW 120 + Sbjct: 129 YFHYR 133 >gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] Length = 180 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 29/207 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV +D+ET + + A V + + ++ + D + I GI Sbjct: 2 NFVAFDFET--ANAKRNSACSLALTVV-QNNQIVDE---LYSLINPKTNFDYRNIAIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 PQ +E I FF+ ++ +N FD + Sbjct: 56 KPQMVADSP-DFSELWPHIESFFT--PESLVVAHNAPFDCSVLTRTLEKYGI-------- 104 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++++D ++ F KL L I+ + H+A D A Sbjct: 105 -AAPHFNVIDTVKTSKQFYDFQDN-----------KLDTLCQNLDIDLAHHHNALDDSQA 152 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210 ++ + + Y+ + Sbjct: 153 CAKILLSQLQNFGSDTLKSFIYKYPRK 179 >gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976] gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976] Length = 218 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +P+++ G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFDQAFVQAAVKR---- 136 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + SF + AH Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKISF-----------DGKQAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 184 ALYDTEKTTELFCAMVNR 201 >gi|94995036|ref|YP_603134.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10750] gi|94548544|gb|ABF38590.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS10750] Length = 208 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 168 ARMTAAIYKSFLETDTN 184 >gi|15675683|ref|NP_269857.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes M1 GAS] gi|13622898|gb|AAK34578.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes M1 GAS] Length = 208 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K + VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSDKIAAEPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T + E Sbjct: 168 ARMTAVIYKSFLETDTN 184 >gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6] gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272] gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227] Length = 220 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ P +Q ++ H A D Y T Sbjct: 97 -----ICTMKLARRLWPGLKYSNMALYKTRKLNVQT------PPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|89098850|ref|ZP_01171731.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911] gi|89086526|gb|EAR65646.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911] Length = 214 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 36/192 (18%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWE-----KIESTEVFFCKPADDYLP--DPEAVFI 60 D ET G D + A + ++E E F +P A I Sbjct: 10 VDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSSAYRI 69 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + V E + F + ++ + +N FD + + + Sbjct: 70 HGIPFEMVRGQ-VFHDE---SVQSFLNKADS--VFAHNASFDRSFMYQM----------Y 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + + ++ + KL L A+ I H A D Sbjct: 114 PEVNDLKWYCTMKGVQWKKYGFANS-------------KLATLLSAHNITDHQTHRAMDD 160 Query: 181 VYATLALVWLIR 192 + + L+ Sbjct: 161 ITYLMELMKQQN 172 >gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338] gi|291007403|ref|ZP_06565376.1| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 12/156 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G D+ D + A + D + D+ L P+ V Sbjct: 1 MNDRLVWIDCEMTGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVR 60 Query: 60 -IT---GITPQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFY 111 + G+T ++ R V AE +RI + + N+I D + Sbjct: 61 EMHERSGLT-EEVRRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFI--ARD 117 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 D++ S L + + Sbjct: 118 MPTLDAHLHYRMVDVSSIKELCRRWFPRIYYAQPEK 153 >gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus N315] gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus Mu3] gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117] gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1] gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796] gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315] gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117] gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398] gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981] gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796] gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus subsp. aureus ED133] gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60] gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp. aureus CGS03] gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp. aureus CGS00] gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172] gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193] Length = 184 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV D+ET + V+V + E+ + + + Sbjct: 3 QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + + QF + + +N FD + + Sbjct: 57 GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + Q R + + L+ + ++ HDA D Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152 Query: 182 YATLALVWLIREKKPK 197 A + + + + Sbjct: 153 KACAMITFRLLKNYEN 168 >gi|149188401|ref|ZP_01866694.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1] gi|148837619|gb|EDL54563.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1] Length = 197 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 55/186 (29%), Gaps = 23/186 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW--EKIESTEVFFCKPADDYLPDPEAVFITG 62 +++ D+ET G D + V + + + ++F P + E I Sbjct: 10 YLVLDFETTGLDANTNTILSLGWVEI-ANFTVNVASAKQLFIESPNE---VKAETAVINH 65 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P+ G+ ++ F I+ + + + + Sbjct: 66 IMPEMLQD-GISLDSAMTQL---FQAAKNKILIAHGSMIEAAFVDE----------YLTQ 111 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G S L VM + D +L + G+ N H+A D Sbjct: 112 KYGVSD---LPVMWLDTLAIEKSMALAVNKDAEIDVRLSETRKRYGLPEYNGHEALIDAI 168 Query: 183 ATLALV 188 AT L Sbjct: 169 ATAELF 174 >gi|319892935|ref|YP_004149810.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius HKU10-03] gi|317162631|gb|ADV06174.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius HKU10-03] gi|323464018|gb|ADX76171.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 186 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 54/202 (26%), Gaps = 30/202 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M N FV D+ET + V+V E +E+ + + + Sbjct: 2 MENSFVALDFET--ANYKRTSICSVGMVKVVAN-EIVETFYTL---VNPNDFFAARNIEV 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + A + QF + +N FD + Sbjct: 56 HGIQAKDVQHSP-NFAYVYPYMMQFI---GDLPVVAHNAAFDMSVLHASIQAENLITPPM 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ Q R A L+ + ++ HDA D Sbjct: 112 TY--------------------FCSYQLAKRTVSARRHGLKHMMSHFNLDFHGHHDALND 151 Query: 181 VYATLALVWLIREKKPKLFEYL 202 A + + + + P L L Sbjct: 152 AKACAMITYRLLKHYPSLNNVL 173 >gi|71904232|ref|YP_281035.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS6180] gi|71803327|gb|AAX72680.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS6180] Length = 208 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 168 ARMTAAIYKSFLETDTN 184 >gi|331245678|ref|XP_003335475.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314465|gb|EFP91056.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 200 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 9/115 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 H V D E G DV +D+ + A + D+ ++++ F L P Sbjct: 13 KHLVWIDCEMTGLDVTVDQIIEIACIITDKDLKELDDGIQFVIHVDQSVLDRMGPWCQNQ 72 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRN 108 G + + L+ E ++I ++ + ++ N++ D + Sbjct: 73 HGKSGLSEACLQSPHTLTEVDQKIRRYLELHLPGLKGKAVLAGNSVYADKMFLDK 127 >gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1] gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1] Length = 274 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 66/216 (30%), Gaps = 36/216 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYL 52 M F V+ D ET G + A D + A + +D + + P + Sbjct: 53 MVERFRKFLPVVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGAN 112 Query: 53 PDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDY 104 + A+ TGI P +R + E E RRI + CI+ +N FD Sbjct: 113 LEQRALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLS 172 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 + R N ++ +LD + + L Sbjct: 173 FLNAAIERTN-----SKNHNPFHQFSVLDTVTLSALAFGQTV-------------LARAC 214 Query: 165 LANGIEHV--NAHDAKADVYATLALVWLIREKKPKL 198 A GIE AH A D T L I + Sbjct: 215 RAAGIEFDGSEAHSALYDTQKTAELFCKILNHYSMM 250 >gi|312882822|ref|ZP_07742555.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122] gi|309369514|gb|EFP97033.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122] Length = 181 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 15/130 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + + D E G D + + A + DR+ + EV K D Sbjct: 5 SQNLIWIDLEMTGLDPEEHKIIEIATIVTDRELNILAEGPVLAIHQPEVELAKMDDWCTN 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 A + ++ + E + F I N++ D + Sbjct: 65 THTASGL----VERVQSSAISEHSAVSQTIDFLEKWVPKGASPICGNSVGQDRRFLYKHM 120 Query: 111 YRNFYDSYRW 120 + + Sbjct: 121 PKLEEYFHYR 130 >gi|19746791|ref|NP_607927.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS8232] gi|209560018|ref|YP_002286490.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes NZ131] gi|19749025|gb|AAL98426.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes MGAS8232] gi|209541219|gb|ACI61795.1| Putative DNA polymerase III epsilon subunit [Streptococcus pyogenes NZ131] Length = 195 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 5 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 58 TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 113 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 154 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 155 ARMTAAIYKSFLETDTN 171 >gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JKD6159] Length = 184 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV D+ET + V+V + E+ + + + Sbjct: 3 QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + + QF + + +N FD + + Sbjct: 57 GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + Q R + + L+ + ++ HDA D Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152 Query: 182 YATLALVWLIREKKPK 197 A + + + + Sbjct: 153 KACAMITFRLLKNYEN 168 >gi|260779555|ref|ZP_05888445.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604364|gb|EEX30668.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 210 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 48/193 (24%), Gaps = 20/193 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D +V I I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIIDNRIITSQP--FEVRLRAPQSLDSNSVKIHQIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 G+ E + ++ F N ++GY+ + + Sbjct: 88 HSDLAD-GIDEKQALTQLLAFV--GNRPLVGYHIRYDKKILDLACKRHLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L+ + + + HDA D + Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLEAICKHLDLPMQSKHDALQDAISA 189 Query: 185 LALVWLIREKKPK 197 + + + Sbjct: 190 ALVFVRLTKGDLP 202 >gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217] gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217] Length = 226 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 73/223 (32%), Gaps = 30/223 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A ++++ ++ T F +P + +PEA+ G Sbjct: 20 VVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + S + II +N FD + RN Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L GI+ N A Sbjct: 140 ---RSPFHPFASFDTATLAGLSIGHTV----------------LAKACKMAGIDFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 H A D T L I + L + ++ + + Sbjct: 181 HSALYDTERTAELFCHIVNRWKALGGWPLATPEQSAIENTDEK 223 >gi|71911395|ref|YP_282945.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS5005] gi|71854177|gb|AAZ52200.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS5005] Length = 195 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 5 DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K + VE E F +IGYN + D + D Y+ Sbjct: 58 TGITSDKIAAEPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 113 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 154 Query: 181 VYATLALVWLIREKKPK 197 T + E Sbjct: 155 ARMTAVIYKSFLETDTN 171 >gi|290979061|ref|XP_002672253.1| predicted protein [Naegleria gruberi] gi|284085828|gb|EFC39509.1| predicted protein [Naegleria gruberi] Length = 1200 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 20/255 (7%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++++D+ET G D + ++ + + E + + I Sbjct: 807 DKYILFDFETTGFWTNDDPPKITEYCFLNMATG-------ESIYGLVNPTKSISYHSTKI 859 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 TGI ++E E I F S T +I +N D + + Sbjct: 860 TGINLNYVRDKPIIEKE-LDFIIDFISNTKGKTFLIAHNGEILDFKVFKKE-----FYPK 913 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDA 177 R S D L +M++ + G T+FK + L + + + H A Sbjct: 914 RESKFENIVFVDSLKLMKSHKDLHHKLPK--KESSGRTAFKEEMLIEHFQVGNVADCHCA 971 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 DV ++ + + ++ + + K N + + S + Sbjct: 972 FFDVIGLFNILNKFFDDVNTAISNIQEFSKTSNIEKKRKKSNSESKLTKVTGCRCTTSCS 1031 Query: 238 ALIAPVAWHPRYKDS 252 L + RY Sbjct: 1032 NLKCSCKKNERYCFP 1046 >gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] Length = 260 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 27/195 (13%) Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G DR + V + ++ + + + E + + IT Sbjct: 4 ICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEY---IDPERQMEAEVIRVHKIT 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + A+ + + +F I +N +FD + + S Sbjct: 61 NEFLVGKPK-FADIADKFIEFVQGARLII---HNAQFDIGFLNEELRKLGKPSMEEIC-G 115 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NAHDAKAD 180 ++ D +++ +A + + L L I+ H A D Sbjct: 116 KDNIIDSMELAKAAFPQMHN--------------SLDALCKRLEIDTTRRVKEGHGALLD 161 Query: 181 VYATLALVWLIREKK 195 + ++++++ Sbjct: 162 AELLGQVYLVLKQQQ 176 >gi|152993185|ref|YP_001358906.1| exonuclease [Sulfurovum sp. NBC37-1] gi|151425046|dbj|BAF72549.1| exonuclease [Sulfurovum sp. NBC37-1] Length = 263 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 59/206 (28%), Gaps = 17/206 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT D E+ G D+ DR Q A ++V Q +KIE+ D + V I Sbjct: 1 MTPTLYFVDVESTGVDLKNDRLIQLAFLKV--QGDKIEAFNDLCYT---DIEMNDTVVAI 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT E I + D + Sbjct: 56 HNITNAMLEDK-YWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEHE----------- 103 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D R + + + K + +A G+ +++AHDA +D Sbjct: 104 ELILEMQKVDTDKCARLLLKEAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSD 163 Query: 181 VYATLALVWLIREKKPKLFEYLYDYR 206 L + E+ + L Sbjct: 164 ALWHYVLFEELLERVEGGIDALVSLT 189 >gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044] gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 219 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 69/263 (26%), Gaps = 54/263 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V + + + +P D P+A+ I IT + Sbjct: 4 VIDTETCGL---QGGIVEIASVDI-VDGQIT-NPMSHLVRP--DRPISPQAMAIHRITEE 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E H + +N FD W Sbjct: 57 MVADKPWIE-EIIPHYH------GSPWYVAHNASFDRRV---------LPEMHGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVTTP----PGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 L+ I + + D + L F + +A +A + Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190 Query: 247 -PRYKDSVIGCNLSGDMRVFQDL 268 P Y + + L Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTL 213 >gi|90409780|ref|ZP_01217797.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK] gi|90329133|gb|EAS45390.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK] Length = 186 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 25/194 (12%) Query: 3 NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 N V +D E GRD + +D +I + KP D + Sbjct: 4 NRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEI-SEFCT 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI PQ ++G AE R + F + + DD Sbjct: 63 ELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAW---GHDDRILHAECAAKGLKVP 119 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + N + L ++ ++ + H Sbjct: 120 FTEYINLAMIFRLQRHVKKKRCGQRAAMEIAGLE-----------------WEGRQHSGY 162 Query: 179 ADVYATLALVWLIR 192 D Y L + Sbjct: 163 VDAYNLARLTRTLF 176 >gi|315295605|gb|EFU54928.1| exonuclease [Escherichia coli MS 16-3] Length = 282 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + +++ Y + G S E AH A AD T Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|301051375|ref|ZP_07198192.1| exonuclease [Escherichia coli MS 185-1] gi|300296987|gb|EFJ53372.1| exonuclease [Escherichia coli MS 185-1] Length = 282 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + +++ Y + G S E AH A AD T Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|294339527|emb|CAZ87886.1| oligoribonuclease [Thiomonas sp. 3As] Length = 203 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 ++ + D E G + DR + A V D Q V +D L +A Sbjct: 17 DNLIWVDMEMTGLNPDTDRIIEVAVVVTDPQLTVRVEGPVLAIHQSDAVLAGMDAWNQNT 76 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + V EA+ S+ I F + N I D + Sbjct: 77 HGKSGLTDRVRASTVDEAQASKAIIAFLKKYVPAGKSPMCGNTICQDRRFMARGMPELEA 136 Query: 116 DSYRW 120 + Sbjct: 137 YFHYR 141 >gi|77461407|ref|YP_350914.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77385410|gb|ABA76923.1| putative DNA poymerase [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 23/193 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G +++ DR V ++ I+ ++ F L +V I G+ P Sbjct: 42 VVLDLETTGLNLSKDRVLSIGAVVIEDGA--IDFSQQFERTLQCHELKLGPSVLIHGLAP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E + +F ++ ++ ++ + +++ R + Sbjct: 100 S-AIAAGSEPTEALVELLEFI--GDSPVLAFHAS-----FDQHMLGRALKEHLGHKLQTV 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + A + L + +E H A AD AT Sbjct: 152 FLDVAQIAPLVCPQAHIREAG-------------LDEWIDWFKLEVFERHHASADALATA 198 Query: 186 ALVWLIREKKPKL 198 L ++ + + Sbjct: 199 ELALILFSRARQQ 211 >gi|9507445|ref|NP_052452.1| hypothetical protein ColIb-P9_p006 [Plasmid ColIb-P9] gi|194447291|ref|YP_002043847.1| YacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300820024|ref|ZP_07100202.1| exonuclease [Escherichia coli MS 107-1] gi|4512442|dbj|BAA75091.1| yacC [Plasmid ColIb-P9] gi|70610197|gb|AAZ05344.1| YacC [Salmonella enterica] gi|194405595|gb|ACF65816.1| YacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300527391|gb|EFK48453.1| exonuclease [Escherichia coli MS 107-1] gi|321271367|gb|ADW79457.1| hypothetical protein YacC [Escherichia coli] gi|323133063|gb|ADX20491.1| YacC protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323959251|gb|EGB54915.1| exonuclease [Escherichia coli H489] gi|325495902|gb|EGC93762.1| hypothetical protein ECD227_4199 [Escherichia fergusonii ECD227] gi|330907847|gb|EGH36370.1| yacC [Escherichia coli AA86] Length = 282 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + +++ Y + G S E AH A AD T Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|297690291|ref|XP_002822553.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Pongo abelii] Length = 222 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92 Query: 61 TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ++ G E EF + Q + P C + N++ D + + + Sbjct: 93 --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHY 149 Query: 120 W 120 Sbjct: 150 R 150 >gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143] gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143] Length = 235 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 62/211 (29%), Gaps = 26/211 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D D + A + ++ + I+ T F P + +P A+ TG Sbjct: 35 VVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLEPAALEFTG 94 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R+ E + ++ +N FD + R Sbjct: 95 IDPYHPFREADPEEVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMAAVERCQIK 154 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + + D + + SF + AH Sbjct: 155 ------RNPFHPFSVFDTATLAGLAFGQTVLAKACQTAGISF-----------NNAEAHS 197 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207 A D T L LI K L + + + Sbjct: 198 AAYDTGKTAELFCLIVNKWKDLGGWNIENDS 228 >gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5] gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5] Length = 210 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV++D E DV + V V + +I+ ++ F+ D + +A I GIT Sbjct: 37 FVVFDCEATELDVKKAKLLSIGAVEV-KNL-EIDLSKSFYEILKSDEI---KAAEIHGIT 91 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + G E ++ + ++GY + Y + Sbjct: 92 REDVEKYGKEPKEVIYDFLKYIK--GSVLVGYYVKFDVSLVEKYSIKYFQYPIINYK--- 146 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 DL ++ Y + L DL G+E H+A D Y T Sbjct: 147 ----LDLFSFVKREY---------------QSGRSLDDLMKELGVEIRARHNALEDAYIT 187 Query: 185 LALVWLIREKKPKL 198 L + Sbjct: 188 ALLFLKYVYPNREY 201 >gi|296135421|ref|YP_003642663.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] gi|295795543|gb|ADG30333.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] Length = 203 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 ++ + D E G + DR + A V D Q V +D L +A Sbjct: 17 DNLIWVDMEMTGLNPDTDRIIEVAVVVTDPQLTVRVEGPVLAIHQSDAVLAGMDAWNQNT 76 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + V EA+ S+ I F + N I D + Sbjct: 77 HGKSGLTDRVRTSTVDEAQASKAIIAFLKKYVPAGKSPMCGNTICQDRRFMARGMPELET 136 Query: 116 DSYRW 120 + Sbjct: 137 YFHYR 141 >gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] Length = 458 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 9/112 (8%) Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I D ET G DR + + + + S+ + P P ++ I GI+ Sbjct: 233 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 288 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + A+ + + + I +N FD + F R Sbjct: 289 DNFLKDKPL-YADIADTLFDYLKGAE---IIAHNATFDMNFLDMEFRRAGLP 336 >gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 223 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 31/211 (14%) Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M VI D ET G V R + + ++ I + F C + +A+ Sbjct: 1 MKE--VILDTETTGLSVRDGHRIVEIGCIELE---NLIPTKNRFHCYLNPERKVSEKALE 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G T + +F + +F + +N FD + N Sbjct: 56 VHGYTDEFL----STHKKFGDIVDEFLVFIENKRLVIHNAEFDLSHLNNE-----LSLLG 106 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDA 177 N + D L + R + SP L L I++ H A Sbjct: 107 KEKLNSENVVDTLALARDKFPGSP--------------ISLDALCKRYRIDNSKRTQHTA 152 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK 208 D + + ++K + + K Sbjct: 153 LIDCDLLAKVYINLLDQKEPTLNFKNEDNEK 183 >gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948] gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132] gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948] gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus CGS01] gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131] gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177] gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131] gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189] Length = 184 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV D+ET + V+V + E+ + + I Sbjct: 3 QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKIH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + + QF + + +N FD + + Sbjct: 57 GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + Q R + + L+ + ++ HDA D Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152 Query: 182 YATLALVWLIREKKPK 197 A + + + + Sbjct: 153 KACAMITFRLLKNYEN 168 >gi|167752075|ref|ZP_02424202.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216] gi|167660316|gb|EDS04446.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216] Length = 164 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 27/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + VRV + E +P DY I Sbjct: 1 MKDFVAIDFET--ANRERTSICSVGLVRV-ENGDIREKIY-RLIRPYPDY-YSSWNTRIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E I + + +N FD+ + F + Sbjct: 56 GLTYRDTAHA-APFPEVWADISPELA---GLPLVAHNSPFDEGCLKAAFRQYGM------ 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + RA + +LQ +A G + + H A AD Sbjct: 106 ---AYPDYRFFCTCRASRRVF---------GRELPNHQLQTVAARCGFDLRDHHHALADA 153 Query: 182 YATLALVWLI 191 A + LI Sbjct: 154 EACAWIARLI 163 >gi|291234393|ref|XP_002737131.1| PREDICTED: Three prime repair exonuclease 2-like [Saccoglossus kowalevskii] Length = 598 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 72/213 (33%), Gaps = 20/213 (9%) Query: 3 NHFVIYDYETFGR---DVALDRPAQFA-------GVRVDRQWEKIESTEVFFCKPADDYL 52 N FV D ET + L + + A + + ++ V P D + Sbjct: 153 NSFVFMDLETTTLIQYNKPLPKITEIALVAVSREALMTEGDIRIVDK-LVMCVDPLDQIV 211 Query: 53 PDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRN 108 P A +TG++ + + + QFF P C+I +N +FD R+ Sbjct: 212 PI--ASQMTGLSNESLQLHNKQTFDVNVMVALRQFFKRQIPPICMIAHNGNKFDFPILRD 269 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 R D + ++ D + P R G + K G Sbjct: 270 ELLRVRGQLDILCGDTLQAFIEIRD--EEERTAFSNYYSSPMRQKGDLTLKSLH-QKYLG 326 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201 + ++AH A++D A + +V + F+ Sbjct: 327 SQFLSAHCAESDAIALMKIVQKQHHTLLRWFDR 359 >gi|297269235|ref|XP_002799845.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Macaca mulatta] Length = 222 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92 Query: 61 TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ++ G E EF + Q + P C + N++ D + + + Sbjct: 93 --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHY 149 Query: 120 W 120 Sbjct: 150 R 150 >gi|194447077|ref|YP_002039046.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194358521|gb|ACF56965.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 282 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + + Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSDPADWLEE---- 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + M + ++ G S E AH A AD T Sbjct: 210 ---LTVYCAMELAAGYYGATYRY-----GTISLACAASQAGLTWE-GQAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|121997034|ref|YP_001001821.1| oligoribonuclease [Halorhodospira halophila SL1] gi|166216263|sp|A1WTK7|ORN_HALHL RecName: Full=Oligoribonuclease gi|121588439|gb|ABM61019.1| Exonuclease, RNase T and DNA polymerase III [Halorhodospira halophila SL1] Length = 183 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFIT 61 + + D E G D + DR + A V D + + V L + Sbjct: 7 NLIWIDLEMTGLDPSRDRIIEIAVVVTDSNLDTLAEGPVLAIHQDRSLLDSMDEWNTRQH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ V EAE ++ F T + N+I D + Sbjct: 67 GRSGLTERVRASTVTEAEAEAQVLAFLKQYVPARTSPMCGNSICQDRRFLARWMPDLEAY 126 Query: 117 SYRWS 121 + Sbjct: 127 FHYRH 131 >gi|120603536|ref|YP_967936.1| exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris DP4] gi|120563765|gb|ABM29509.1| Exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris DP4] Length = 251 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 5/118 (4%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV+ D E G D AGV + + F K P+ +A+ + G+ Sbjct: 47 TFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGR--CFEAKMRPHLPPEEDAIAVHGL 104 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 P + AE F G++ + R + Sbjct: 105 LPDETATHDDP-AESLAAFRTFCGEAVPT--GWHVGLDAAFLDAAAQRHGVRPWPRRT 159 >gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa UCBPP-PA14] gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1] gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14] Length = 208 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 20/181 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET D V V R + + +P D E++ I + Sbjct: 35 LDLETTSLDPRRADVLSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 +E + R++ F + ++GY +R+ R +D + S Sbjct: 93 LEGQLQLE-QALRQLLAFI--GDRPLLGYYLSFDVAVLNRH--LRQLFDRQLHNPSIEIS 147 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 V R D + LA A + H A D A + Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194 Query: 188 V 188 Sbjct: 195 F 195 >gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 232 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP S ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|217972890|ref|YP_002357641.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] gi|217498025|gb|ACK46218.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] Length = 228 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 20/188 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D E G + D+ V ++R + E + ++ I GI Sbjct: 42 LVAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQIRGSV---GQSATIHGIL 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ +E E F + ++ + D + + + Sbjct: 99 DNHLVQAVTIE-EAMGW---FINQTYGRVLVAHYAPLDCRFLQQDLLA------IYHQAL 148 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R I+ S +L G+ AH A D A Sbjct: 149 ILPAIDTLMLERHRLLREHSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALAC 201 Query: 185 LALVWLIR 192 L+ Sbjct: 202 GELLLAQM 209 >gi|5817183|emb|CAB53690.1| hypothetical protein [Homo sapiens] gi|49065426|emb|CAG38531.1| DKFZP566E144 [Homo sapiens] gi|117646830|emb|CAL37530.1| hypothetical protein [synthetic construct] gi|208965440|dbj|BAG72734.1| REX2, RNA exonuclease 2 homolog [synthetic construct] Length = 237 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGRSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|71901523|ref|ZP_00683608.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|71728710|gb|EAO30856.1| Ribonuclease T [Xylella fastidiosa Ann-1] Length = 210 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G + + A + + D PA Sbjct: 13 MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 72 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106 DP+++ +TGI A + + + I+ +N FD + Sbjct: 73 IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFL 132 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R Y + + L + + A Sbjct: 133 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 175 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 176 LDWNAADAHSAVYDAEKTAHLFCTITN 202 >gi|328675229|gb|AEB27904.1| Oligoribonuclease [Francisella cf. novicida 3523] Length = 178 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 11/163 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G DV R + A + D+ I E D+ L + + Sbjct: 5 DNLIWIDLEMTGLDVDNCRIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLATMNEWCIKT 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T Q+ + ++I +F + + N+I D + Y Sbjct: 65 HAETGLT-QRVKASTISTEAAEQQILEFIREFVPYQSSPLCGNSIWQDRRFL--AKYMPK 121 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 122 IDDYCHYRMLDVTTLKLLNQYWGDSKGFDKKNTHKALDDIRES 164 >gi|320087113|emb|CBY96881.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 235 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 43/182 (23%), Gaps = 35/182 (19%) Query: 3 NHFVIYDYETFGR-------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 + VI D ET G ++++ + Sbjct: 63 KNIVIVDTETTGLGREAEIIEISIIDCT--GAIL-------------LNTLIKPSKDIPA 107 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 EA I GIT + E ++ + S + YN + R Sbjct: 108 EATEIHGITDEMVEDAP-SWKEMLPQVLELISHG---WVAYNAKFDARMLEQASGSRVDP 163 Query: 116 D---------SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 D ++ + + + + WP D L D L Sbjct: 164 DYFGVPECAMQLYAEYNGEWDKKRRKYKWKKLTDAATSLDAWPEEIDENPHRALYDCYLT 223 Query: 167 NG 168 G Sbjct: 224 LG 225 >gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] Length = 221 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A V V + + D +A+ + IT Sbjct: 2 FRVIDTETCGL---QGGVVEVASVDV-INGQIVNPMSDLIS---PDRPISRQAIAVHKIT 54 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + R H + +N FD R W Sbjct: 55 EAMVRGKPTIE-QAIGRYH------GSPFYVAHNASFD---------RRMLPEMHGEW-- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + R + WP S + + ++AH A D Y T Sbjct: 97 ----ICTMTLARRL---------WPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVT 143 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 144 AALLIRIMSF 153 >gi|114640399|ref|XP_001150488.1| PREDICTED: similar to CGI-114 protein isoform 1 [Pan troglodytes] Length = 222 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92 Query: 61 TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 ++ G E EF + Q + P C + N++ D + + + Sbjct: 93 --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHY 149 Query: 120 W 120 Sbjct: 150 R 150 >gi|15838737|ref|NP_299425.1| ribonuclease T [Xylella fastidiosa 9a5c] gi|24638168|sp|Q9PBJ8|RNT_XYLFA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|9107281|gb|AAF84945.1|AE004029_5 ribonuclease T [Xylella fastidiosa 9a5c] Length = 211 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G + + A + + D PA Sbjct: 14 MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 73 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106 DP+++ +TGI A + + + I+ +N FD + Sbjct: 74 IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFL 133 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R Y + + L + + A Sbjct: 134 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 176 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 177 LDWNAADAHSAVYDAEKTAHLFCTITN 203 >gi|158335553|ref|YP_001516725.1| exonuclease [Acaryochloris marina MBIC11017] gi|158305794|gb|ABW27411.1| exonuclease [Acaryochloris marina MBIC11017] Length = 168 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 31/191 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET D D +RV+ + ++ + P + +I GI Sbjct: 9 NFVAIDFET--ADYQRDSACAIGVIRVEND-QIVDRSHFLIRPPRQKFQF----TYIHGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE + F+ + + +N FD D + Sbjct: 62 TWSDVKHHP-TFAELWPNLQPKFA--GSDFVAAHNANFDRSVLNACCQAAELDPMPLPF- 117 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + R ++ P KL ++ I H A +D A Sbjct: 118 -----LCTVKLAREVWNIRPT--------------KLPNVCEFLDIPL-QHHQALSDAEA 157 Query: 184 TLALVWLIREK 194 +V R++ Sbjct: 158 CAKIVIAARQQ 168 >gi|149922094|ref|ZP_01910534.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Plesiocystis pacifica SIR-1] gi|149817031|gb|EDM76513.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Plesiocystis pacifica SIR-1] Length = 213 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 6/149 (4%) Query: 5 FVIYDYETF----GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +++ D E G + + V VD Q + F +P P Sbjct: 6 YLVIDLEATCDDAGAVPRREMEIIEIGAVLVDGQTLCPKREFQRFVRPLRHRTLTPFCRQ 65 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T IT + E + F + +D + Sbjct: 66 LTSITQAEVDGA-ATFPEVIAELRAFMYDDGGRPRFCSWGAYDRGQFEQDARFHGVALPF 124 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQW 148 N + + + R Y + + Sbjct: 125 TDHLNLKAGFSRVLGTRKRYGMAGALRRL 153 >gi|119946941|ref|YP_944621.1| oligoribonuclease [Psychromonas ingrahamii 37] gi|119865545|gb|ABM05022.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 179 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ V D E G + D+ + A + D + F ++ L D Sbjct: 3 KNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWCTT 62 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + + A + F + N+I D + Sbjct: 63 QHGKSGLTDRVKASQISCANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPALE 122 Query: 115 YDSYRW 120 + Sbjct: 123 AYFHYR 128 >gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans PV-1] gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans PV-1] Length = 310 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 33/190 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ D ET G D D + V E + +TG Sbjct: 40 LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ + +AE I + + ++ +N FD Sbjct: 100 ISDAMVAGQRLDDAE----IETWLKKAD--LLIAHNAAFDRPM----------------- 136 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + A ++ +G S KL +A G H A D Sbjct: 137 ------LERRLPLAAEKNWACTFCDINWDAEGIASRKLDYIACRLGYFFDG-HRAVVDAQ 189 Query: 183 ATLALVWLIR 192 ATL L+ Sbjct: 190 ATLHLLTRAM 199 >gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158] Length = 221 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A V V + + D +A+ + IT Sbjct: 2 FRVIDTETCGL---QGGVVEVASVDV-INGQIVNPMSDLIS---PDRPISRQAIAVHKIT 54 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + R H + +N FD R W Sbjct: 55 EAMVRGKPTIE-QAIGRYH------GSPFYVAHNASFD---------RRMLPEMHGEW-- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + R + WP S + + ++AH A D Y T Sbjct: 97 ----ICTMTLARRL---------WPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVT 143 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 144 AALLIRIMSF 153 >gi|304411957|ref|ZP_07393568.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|307303275|ref|ZP_07583030.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] gi|304349817|gb|EFM14224.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|306913635|gb|EFN44057.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] Length = 228 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 51/188 (27%), Gaps = 20/188 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D E G + D+ V ++ + E + ++ I GI Sbjct: 42 LVAMDLEMTGLNPQQDQILSIGLVPIEHGEIPLARAEQKLVQIRGSV---GQSATIHGIL 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ +E E F + ++ ++ D + + + Sbjct: 99 DNHLVQAVTIE-EAMGW---FINQTYGRVLVAHHAPLDCRFLQQDLLA------IYHQAL 148 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R I+ S +L G+ AH A D A Sbjct: 149 VLPAIDTLMLERHRLLREQSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALAC 201 Query: 185 LALVWLIR 192 L+ Sbjct: 202 GELLLAQM 209 >gi|117621105|ref|YP_856588.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562512|gb|ABK39460.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 208 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 51/196 (26%), Gaps = 20/196 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET D A VR+ + +V I G+ Sbjct: 32 VALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQAPASL--SEHSVVIHGLRH 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q G+ R + F ++GY+ + + + Sbjct: 90 QDLQ-QGMTLEAALRLLLAFI--GPRELVGYHIAYDLRILNLACQRCWGLTLAQRGIEVS 146 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + D A L ++ G+ + AHDA +D Sbjct: 147 RLYHDHL---------------YRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAA 191 Query: 186 ALVWLIREKKPKLFEY 201 + + P + Sbjct: 192 LIFLRLTRGGPLAYPK 207 >gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] Length = 260 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 31/213 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G + + + V++ + ++++ E F K + +TGI Sbjct: 72 FCIVDIESTGG-INSGQILEIGAVKI-QNHKELDRFESF-VKVDE---IPLNITKLTGIE 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +R + F N + +N++FD + Y + Sbjct: 126 LNMVKDAPN----LTRVLEAFRLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D + ++ +KL L IE H A D A Sbjct: 178 --RKICTVDFAQCC--------------IQSSHYKLDTLKEILKIE-SIHHRALNDALAA 220 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 + K P + + + + KL + Sbjct: 221 AEIFKYCLSKLPPHIKTTEELIHFTKTAKLKNK 253 >gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CDC1551] gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11] gi|218755494|ref|ZP_03534290.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis GM 1503] gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis str. Haarlem] gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis GM 1503] gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu002] gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu003] gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu004] gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu005] gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu006] gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu008] gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu007] gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu009] gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis CDC1551] gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis str. Haarlem] gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis F11] gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis GM 1503] gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu002] gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu003] gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu004] gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu005] gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu006] gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu007] gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu008] gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu009] gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CDC1551A] Length = 329 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA DV Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] Length = 329 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA DV Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Rv] gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu001] gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu010] gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu011] gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu012] gi|2960135|emb|CAA18033.1| PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium tuberculosis H37Rv] gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis H37Ra] gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu001] gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu010] gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu011] gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu012] Length = 329 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA DV Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11] gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46] Length = 157 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 30/185 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV D+ET + V+V + E+ + + + Sbjct: 3 QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + + QF + + +N FD + + Sbjct: 57 GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + Q R + + L+ + ++ HDA D Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152 Query: 182 YATLA 186 A Sbjct: 153 KACAM 157 >gi|331685967|ref|ZP_08386544.1| exonuclease superfamily [Escherichia coli H299] gi|331076920|gb|EGI48141.1| exonuclease superfamily [Escherichia coli H299] Length = 282 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N+ + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNSRFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A AD Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400] gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400] Length = 221 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A ++++ + + T F +P + +P A+ G Sbjct: 20 VVIDVETAGFNANTDALLEIAVSLLKMNSDGVIVLDRTLHFNIEPFEGANLEPAALAFNG 79 Query: 63 ITPQK----ALRDGVVEAEFSRRI--HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P A+ + V E + + Q + + II +N FD + RN Sbjct: 80 IDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVNKAIERNGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L GI+ N A Sbjct: 140 ---RSPFHPFASFDTATLAGLAIGHTV----------------LAKACKMAGIDFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L LI + Sbjct: 181 HSALYDTERTAELFCLIVNR 200 >gi|115351259|ref|YP_773098.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] gi|115281247|gb|ABI86764.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] Length = 276 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 40/211 (18%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVFI 60 I D ET G A D P + V+ + ++I P+A + Sbjct: 24 IIDTETTGV-AAHDEPISIGILLVEIEPGSGVLVQEIGRYHGLR---EPCVPIHPKAQAV 79 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+T + A + I++ ++ +N +FD Sbjct: 80 HGMTAADLSGKVLDLAWITSLINE------ADVLIAHNAQFDARM--------------- 118 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 ++ + ++ Q+P KL + G+ HDA D Sbjct: 119 --------LAVVCDAGSAKSWRCSLQQFPWPA-AVGRKKLDSVCEFYGVVKQLRHDALGD 169 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 A LA++ + K + YL K + Sbjct: 170 CQALLAVLLIHTGKTTRSRTYLALLLAKAPV 200 >gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B] gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B] Length = 258 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +D ++ T F +P + +P A+ G Sbjct: 40 VVIDVETAGFNAQTDALLEIAVTLLTMDDNGMLALDKTLHFHIEPFEGANLEPAALAFNG 99 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + + +I +N FD + R+ Sbjct: 100 IDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHGFVTKAIDRSGVK 159 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + + D + L GI N A Sbjct: 160 ------RSPFHPFATFDTACLSGLALGHTV-------------LAQACKIAGIPFDNKEA 200 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 201 HSALYDTERTAELFCYIVNR 220 >gi|83648050|ref|YP_436485.1| oligoribonuclease [Hahella chejuensis KCTC 2396] gi|123531236|sp|Q2SBB4|ORN_HAHCH RecName: Full=Oligoribonuclease gi|83636093|gb|ABC32060.1| Oligoribonuclease (3'->5' exoribonuclease) [Hahella chejuensis KCTC 2396] Length = 182 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 ++ + D E G D DR + A V E + + D Sbjct: 5 DNLIWIDLEMTGLDPDSDRIIEMAVVVTTSNLELVAEGPVIAVHQPDSVLALMDDWNRNT 64 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A +TG + + EA+ ++I F + + N+I D + Sbjct: 65 HGASGLTG----RVKGSTIGEADAEKQILDFLAQHVDAGCSPMCGNSIGQDRRFLARYMK 120 Query: 112 RNFYDSYRW 120 + Sbjct: 121 DLEKFFHYR 129 >gi|282877400|ref|ZP_06286223.1| DNA polymerase III subunit epsilon domain protein [Prevotella buccalis ATCC 35310] gi|281300452|gb|EFA92798.1| DNA polymerase III subunit epsilon domain protein [Prevotella buccalis ATCC 35310] Length = 194 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 26/186 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F D+ET + V V + +S +P +Y P + + G Sbjct: 31 KDFAAIDFET--ANSCRSSVCSVGVVIV-ENGKITDSYYHLI-RPYPNY-YHPRNIAVHG 85 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P E +I + +N FD+ + + +Y ++ Sbjct: 86 ILPSDTQDAP-TFPEVWAQIAPLIKH---LPLVAHNKAFDE-----SCLKACFATYGMAY 136 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N L+ R + +L +A G VN H A AD Sbjct: 137 LNYPFYCTLIASRRVFCHH------------ELANHQLHTVAAHLGYNLVNHHHALADAE 184 Query: 183 ATLALV 188 A + Sbjct: 185 ACSVIA 190 >gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2] Length = 218 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 30/210 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V+++ + T + P + +P A+ G Sbjct: 18 VVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYPDQTFHYHVDPFEGANLEPAALEFNG 77 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P ALR + E+E + + + + +I +N FD + R Sbjct: 78 IDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARC--- 134 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + + + + +D + L A GIE A Sbjct: 135 NIKRTPFHPFVSFDTTSLA----------------GLTLGQTVLVKACRAAGIEFDQKEA 178 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYD 204 H A D T L + + L + Sbjct: 179 HSALYDAQKTTELFCFMVNRYKALGGWPLA 208 >gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154] gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154] Length = 177 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 28/200 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + A V + ++ + + G+ Sbjct: 2 NFIAMDFET--ANHEKHSAVSIAIAVVRHN-QVVDKFYSL---IKPETYFSARNTAVHGL 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I F ++ +N FD+ + + Sbjct: 56 KESDVAQAPK-FPEVWKIIAPLFKEDK--LVVAHNAAFDNSILKGTLAYYGIEE------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD +R PD + KL +A GI + H+A D A Sbjct: 107 ---PHYMLLDTVRTSRKLLPD----------FKNHKLNTVAENFGITLDHHHNALDDAVA 153 Query: 184 TLALVWLIREKKPKLFEYLY 203 ++ + + Sbjct: 154 AANILIYEADHFGVDNLKSF 173 >gi|90416474|ref|ZP_01224405.1| oligoribonuclease [marine gamma proteobacterium HTCC2207] gi|90331673|gb|EAS46901.1| oligoribonuclease [marine gamma proteobacterium HTCC2207] Length = 188 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + + D E G DR + A V D+ + + +D+ + D Sbjct: 14 NLIWIDLEMTGLSPERDRIIEIATVVTDKDLNVLAEGPMIAVHQSDELIDGMDEWNTRQH 73 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ + V EAE +F + + N+I D + N Sbjct: 74 GGSGLTERVRQSLVTEAEAELATIEFLRQWVPAGSSPMCGNSICQDRRFLANYMTDLQRF 133 Query: 117 SYRW 120 + Sbjct: 134 FHYR 137 >gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T] gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301] gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T] gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017] gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T] gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71] gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671] gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71] gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304] Length = 220 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 72/265 (27%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S + KL ++ G+ H H A D Y T Sbjct: 97 --ICTMKLARRLWPGLK-----YSNMALYKTRKL-NVQTPLGLHH---HRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 +P Y + S + L Sbjct: 191 YPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 219 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 69/263 (26%), Gaps = 54/263 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V + + + +P D P+A+ I IT + Sbjct: 4 VIDTETCGL---QGGIVEIASVDI-VDGQIT-NPMSHLVRP--DRPISPQAMAIHRITEE 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E H + +N FD W Sbjct: 57 MVADKPWIE-EIIPHYH------GSRWYVAHNASFDRRV---------LPEMHGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVTTP----PGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 L+ I + + D + L F + +A +A + Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190 Query: 247 -PRYKDSVIGCNLSGDMRVFQDL 268 P Y + + L Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTL 213 >gi|53803894|ref|YP_114507.1| ribonuclease T [Methylococcus capsulatus str. Bath] gi|53757655|gb|AAU91946.1| ribonuclease T [Methylococcus capsulatus str. Bath] Length = 209 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 53/199 (26%), Gaps = 28/199 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V+ D ET G D + + A V +D + T KP + D A+ Sbjct: 18 VVVDVETSGFDPHANALLEIAAVHLDMDESGNLHPV-RTHQLHVKPFEGAKLDEAALNFN 76 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P R V E E +I I+ +N FD + R Sbjct: 77 KINPFHPFRFAVDEREALSQIFDAVQQSIRQHGCTRAILVGHNPAFDIAFLNAASSR--- 133 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 N + D + + A +H AH Sbjct: 134 ---ARIKKNPFHPFSTFDTATLGGLAYGQTVLARAAQ-----------AAGLSWDHQEAH 179 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I + Sbjct: 180 SAAYDANQTARLFCTIVNR 198 >gi|241889971|ref|ZP_04777269.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC 10379] gi|241863593|gb|EER67977.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC 10379] Length = 616 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 95/304 (31%), Gaps = 40/304 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F + D E QF+ ++D + +I S ++ +P + Sbjct: 1 MNKLFCVVDIELT----DDKEIIQFSATKLDENFREILSIN-YYIQPKKQV--STFVTEL 53 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI+ + + + ++ + I+ + + D + Sbjct: 54 TGISNEMLHDKP-FFEDVAHELYNYIK---GDILVCHGLPSDYVILK------------- 96 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179 R+ + ++ TS++L DL+ + G+ + H+A Sbjct: 97 ------KRFHDVGILYKAKLSLDTVELSRLFLPSQTSYRLSDLSNSLGLYTGDQYHNAAI 150 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 DV T+ L+ I K K + N ++ L++ +++ F +R+ + Sbjct: 151 DVKVTVKLLKEIARKISK-----INTDNYKKIENLLEKIDLSMYKF--ARFCRNRAKS-- 201 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299 + + V + D R D D L + K + + + Sbjct: 202 VEFNSDEFINYQGVDFRKVVYDNRKTCDNDKFILFSSIDEDDYVSKFKITDFVILKKKSS 261 Query: 300 CPIL 303 L Sbjct: 262 YIPL 265 >gi|291383854|ref|XP_002708465.1| PREDICTED: small fragment nuclease [Oryctolagus cuniculus] Length = 237 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158 Query: 114 FYDSYRW 120 + Sbjct: 159 MKHLHYR 165 >gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] Length = 173 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 48/192 (25%), Gaps = 31/192 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 MT +V D+ET G A R+ +S P+ L + Sbjct: 2 MTGRYVALDFETSG--YAAHSACAVGLCRI-EDGAVTDSFYSLIRPPSSRVLF----THV 54 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G+T E ++ F + I +N FD Sbjct: 55 HGLTWPLLKDAP-TFTEVWPQLAAFME--GSRAILAHNAGFDRRVLHASCQALGL----- 106 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + L ++ R S L + GI + H +D Sbjct: 107 ----VQPQLPFLCTLKGAR-----------RSLPLASRALDSVCDYFGIPLDHHHAG-SD 150 Query: 181 VYATLALVWLIR 192 A + + Sbjct: 151 ARACAEIYLRLH 162 >gi|149192489|ref|ZP_01870676.1| oligoribonuclease [Vibrio shilonii AK1] gi|148833680|gb|EDL50730.1| oligoribonuclease [Vibrio shilonii AK1] Length = 181 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 ++ + D E G D + + A + D + + ++ K D Sbjct: 6 DNLIWVDLEMTGLDPEQHKIIEIASIVTDSELNILAEGPVIAIHQSDEELAKMDDWCTNT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + EAE ++ F I N+I D + Sbjct: 66 HTASGL----VARVKDSEYDEAEAIKQTITFLEQWVPKGKSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEEYFHYR 130 >gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901] gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901] Length = 211 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 66/198 (33%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + A D + A V + D + + + T F +P + + A+ TG Sbjct: 21 VIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEKAALEFTG 80 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I + R+ V EA I N ++ +N FD + R+ Sbjct: 81 IDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAAAARSDIK 140 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + D + ATS KL L +N AH Sbjct: 141 ------RNPFHPFSCFDTATLCGLIFGHTV-------LATSCKLAGLEFSNR----EAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D T L L+ K Sbjct: 184 AAYDAEKTADLFCLMVNK 201 >gi|328865534|gb|EGG13920.1| hypothetical protein DFA_11681 [Dictyostelium fasciculatum] Length = 383 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 15/117 (12%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + +D ET G + + + + + + + F+ K + A G+ Sbjct: 81 ILFFDTETTGLATSTTSQIIELSLINIKDG-------DSFYRKVNPTIPIEDGATKKHGM 133 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114 T Q E + + QF P II +N +FD + +N Sbjct: 134 TNQSLAGHPYWE-DVEPELIQFLDKYCVGDTPVEIIIVAHNEKFDRHILATRIVKNM 189 >gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A] gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A] Length = 178 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V R E ++ P +Y + Sbjct: 16 MQNFAAIDFET--ANFERSSVCSVGVVIV-RGGEVADTFYSL-VHPEPNY-YQWRCTQVH 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + V ++ RI + +N FD R F + Sbjct: 71 GLTREDTDGAPV-FSKVWARIEPLIE---GLPLVAHNAPFDKGCLRACFQ---------T 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++ LD +RA P ++ +L ++ A G + H A AD Sbjct: 118 YRMDYPDYEFLDTLRAARRVFPHL----------SNHQLHTVSAACGYDLSRHHHALADA 167 Query: 182 YATLALVWLI 191 A + I Sbjct: 168 EACAWIAREI 177 >gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] Length = 208 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 59/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + T F P + DP A+ TG Sbjct: 12 VVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFTG 71 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E I + N II +N FD + R+ Sbjct: 72 IDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGLK 131 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + + + AH Sbjct: 132 RNPFHPFATFDTAALSGLVLGQTILAKAC-----------------ITAEIPFDSNQAHS 174 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 175 ALYDTDRTALLFCELVNR 192 >gi|238793401|ref|ZP_04637027.1| Oligoribonuclease [Yersinia intermedia ATCC 29909] gi|238727370|gb|EEQ18898.1| Oligoribonuclease [Yersinia intermedia ATCC 29909] Length = 181 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ +++ + +F I N++ D + Sbjct: 65 THTGSGL-VERVKASPFSDSDAELQTIEFLKQWVPAGASPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|25027941|ref|NP_737995.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259506334|ref|ZP_05749236.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens YS-314] gi|23493224|dbj|BAC18195.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259166114|gb|EEW50668.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens YS-314] Length = 227 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 18/184 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + V V + ++ + + + AV I +T Sbjct: 45 LLAVDVETTGLKPDEHQIVSIGWVPVTGRVIELGGAGYRVIRGTEGFTVGSSAV-IHRLT 103 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + GV + + ++ + + + + F + Sbjct: 104 DDELA-AGVDLEDALVELLAALK---GRVLLAHFAPMEQNFLSAACLKYFDAPLQ----- 154 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D +P +D +L + G+ + H A D A Sbjct: 155 ----LPVVDTFAIERRHMEKMSTYPRGED----LRLARVRTRYGLPQYSNHQALTDALAC 206 Query: 185 LALV 188 L Sbjct: 207 AELY 210 >gi|218296944|ref|ZP_03497630.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23] gi|218242647|gb|EED09183.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23] Length = 1684 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 22/194 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E D + A D Q + D EA IT I Sbjct: 7 FVALDLEATSPDPEEAEILELAAQ--DSQGRTFHRYLATNKPLSKD----HEAFRITQIP 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ R+ V R F ++G+N +R+D + Sbjct: 61 FEEYEREKVPPERALREFLDFL--GGRSLLGHNLLRYDLPLLERALGEVGLN-------L 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVNAHDAKADVYA 183 + LD +R + +P DG ++L DL E AH A DV A Sbjct: 112 PPEAYRALDTLRLAHLV------FPIPKDGLAGYRLGDLYHYLTQEELEGAHRAATDVGA 165 Query: 184 TLALVWLIREKKPK 197 T ++ + + + Sbjct: 166 TWRILEALSQVQIP 179 >gi|154507795|ref|ZP_02043437.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC 17982] gi|153797429|gb|EDN79849.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC 17982] Length = 250 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 26/201 (12%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEK-------IESTEVFFCKPADDYLPDPEAVFI 60 +D ET G DR + + + + +A + Sbjct: 11 FDTETTGVRALKDRLVT-GALVLRIDGASYRSGVSAPDQVATWLT--DPGVEIPEQATAV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GIT ++A RDG E + + N +D R+ S+ Sbjct: 68 HGITTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSF 127 Query: 119 RWSWDN-GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHD 176 + D L + R + F L ++A G +AH Sbjct: 128 EERLEGAPMLIVDPLVLDRKLDRFR------------KGKKTLTEMAPVYGAVASPDAHT 175 Query: 177 AKADVYATLALVWLIREKKPK 197 A+ DV TL ++ + +K P+ Sbjct: 176 AEVDVAMTLDVLAGMVDKYPQ 196 >gi|308048230|ref|YP_003911796.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307630420|gb|ADN74722.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 181 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + + D E G D + + A + D + + V + L D V Sbjct: 7 NLIWIDLEMTGLDPEQNTIIEIATIVTDSELNVLAEGPVLAVHQPESELAKMDEWNVRTH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ V AE R+ F + I N++ D + Sbjct: 67 GNSGLTERVRASKVDMAEAERQTLAFLAEWVPAGASPICGNSVGQDRRFLVKYMPALEAY 126 Query: 117 SYRWS 121 + + Sbjct: 127 FHYRT 131 >gi|254583524|ref|XP_002497330.1| ZYRO0F03036p [Zygosaccharomyces rouxii] gi|238940223|emb|CAR28397.1| ZYRO0F03036p [Zygosaccharomyces rouxii] Length = 251 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 9/127 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFC------KPADDYLP 53 V D E G D DR + + D +++ V C + + Sbjct: 38 KPLVWVDCEMTGLDHNSDRIIEICCIITDGHLSVVDNNCYESVIHCDKSILDQMGPWCVE 97 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + +T VE E + I ++ P T ++ N+I D + F R Sbjct: 98 HHGSSGLTQKVLDSDKTREQVEEELLQFIRKYVPEPRTGVLSGNSIHMDRLFMLKDFPRV 157 Query: 114 FYDSYRW 120 + Sbjct: 158 LEHLHYR 164 >gi|332290039|ref|YP_004420891.1| oligoribonuclease [Gallibacterium anatis UMN179] gi|330432935|gb|AEC17994.1| oligoribonuclease [Gallibacterium anatis UMN179] Length = 182 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D DR + A + D+ + V K D L + Sbjct: 5 KQNLIWIDLEMTGLDPNKDRIIEIATIVTDKNLNILAEGPVLAIKQDDKILAGMNEWCQK 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ + + E + F I N++ D + N Sbjct: 65 THSANGLIERVRQSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFIFNYMPDLA 124 Query: 115 YDSYRW 120 + Sbjct: 125 DYFHYR 130 >gi|153001188|ref|YP_001366869.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] gi|151365806|gb|ABS08806.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] Length = 228 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 20/188 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D E G + D+ V ++R + E + ++ I GI Sbjct: 42 LVAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQIRGSV---GQSATIHGIL 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ +EA F + ++ ++ D + + + Sbjct: 99 DNHLVQAVTIEAAMGW----FINQTYGRVLVAHHAPLDCRFLQQDLLA------IYHQAL 148 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R I+ S +L G+ AH A D A Sbjct: 149 ILPAIDTLMLERHRLLREHSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALAC 201 Query: 185 LALVWLIR 192 L+ Sbjct: 202 GELLLAQM 209 >gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47] gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage phi2958PVL] gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 132] gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47] gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL] gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] Length = 306 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 30/205 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET + A ++ + + + + I GI+ Sbjct: 3 FVAIDVET--ANEQRSSICSIALLKFQDNKMR----DAIYTHINPETYFSSINTSIHGIS 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + I +F II +N FD Y + F + + Sbjct: 57 EEDVMDSPKM-YQMHEAIIRFLDNH---IIVAHNTSFDMYALCDSFKKYNLPLPSNQY-- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + S++LQDLA I++ H+A D Sbjct: 111 ------------------FCTYRLSKDLYNLPSYRLQDLAEHFDIKNEEYHNAFYDAKVC 152 Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209 + + I + + L + +N Sbjct: 153 AKIAYNILKDQDANLNDLVENQNFK 177 >gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium baculatum DSM 4028] gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium baculatum DSM 4028] Length = 177 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 29/183 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D+ET D D +V + E ++ P P V + GI Sbjct: 7 YVAIDFET--ADSCRDSACAVGLTKV-QGGEIVDRLYGLIRPPR--SRFSPFCVNVHGIH 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 EF F + +N FD + + Sbjct: 62 WSDVKDAPA-FREFWIENAGFLE--GADFLAAHNASFDRSVLGACCTMAGLPAPSLPF-- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +++ R + P KL D+ G++ + H +D A Sbjct: 117 ----VCTVELARNQWNLRPT--------------KLPDVCRHLGLDLNHHHAG-SDAEAC 157 Query: 185 LAL 187 + Sbjct: 158 ARI 160 >gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70] gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218] Length = 220 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 66/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ P +Q ++ H A D Y T Sbjct: 97 -----ICTMKLARRLWPGLKYSNMALYKTRKLNVQT------PPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 +P Y + S + L Sbjct: 191 YPGYLRWLFNNLNSMSPELRLTLKH 215 >gi|322373528|ref|ZP_08048064.1| exonuclease [Streptococcus sp. C150] gi|321278570|gb|EFX55639.1| exonuclease [Streptococcus sp. C150] Length = 196 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E F + Q + V++DR E++ + F D +TG Sbjct: 5 ETYIAFDLE-FNTVDGVSHIIQVSAVKMDRH-EEVGQFDSF---VYSDVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E+ F +T +IGYN ++ D + + Y Sbjct: 60 ITADKIAKAPKLES-VLADFKAFV--GDTPLIGYNALKSDLPV-LAENGLDLEEQYA--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ D A +GI + KL +A GI+ + H++ D Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAQIYEKFLELDEN 171 >gi|237747031|ref|ZP_04577511.1| oligoribonuclease [Oxalobacter formigenes HOxBLS] gi|229378382|gb|EEO28473.1| oligoribonuclease [Oxalobacter formigenes HOxBLS] Length = 218 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + + D E G D DR + A V D + V+ D+ L +A Sbjct: 44 NLIWVDLEMTGLDPETDRIIEVALVVTDPDLNILAEGPVYAIHQPDEILNAMDAWNKGTH 103 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ V EA + +F + N I D + + Sbjct: 104 GRSGLIERVKASNVTEAMAEDALIEFLEAYVPKGKSPMCGNTICQDRRFMAKTMPKLEAY 163 Query: 117 SYRW 120 + Sbjct: 164 FHYR 167 >gi|241895341|ref|ZP_04782637.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides ATCC 33313] gi|241871315|gb|EER75066.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides ATCC 33313] Length = 183 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 60/204 (29%), Gaps = 43/204 (21%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59 ++V++D E G + + + ++V IE V P A+ Sbjct: 7 KNYVVFDLEMNGSN----QIIEIGAIKVTGSQN-IEKFSVIVNNPPVGS-----AMKSFK 56 Query: 60 -ITG--------ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 IT IT G+ E R +F I+G+ + D + Sbjct: 57 YITKSMGGKNGWITLDMI-SHGICEERALNRFMRFVGDY--AIVGHAIVDGDVQLIKEGL 113 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 N +WD + P L DLA G++ Sbjct: 114 QHNNL-----------GKWDTRGKLYDTQQIHGAIAGNPQDI------SLMDLAEMYGVD 156 Query: 171 HVNA-HDAKADVYATLALVWLIRE 193 H A D TLA+ +++ Sbjct: 157 LGEQKHRALPDAKETLAIFLAMKK 180 >gi|153008882|ref|YP_001370097.1| exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi ATCC 49188] gi|151560770|gb|ABS14268.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi ATCC 49188] Length = 213 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 23/200 (11%) Query: 4 HFVIYDYETFGR-------DVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD- 54 ++ +D ET G D R A A + D +I+ + ++ +P +P Sbjct: 6 KYLTFDTETNGLFNFKLPADAEGQPRLAHLAMIWADEDGNEIKR-KDYYIRPDGWTMPQG 64 Query: 55 PE-AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 P A + G+T + + +G + I N ++D R R Sbjct: 65 PGSAGAVNGLTDEFLMENGGHIDAVLHAYTREIER--GLIAVAFNAQYDLKIMRGELRRA 122 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 N + + KL + G Sbjct: 123 GMPDLFEKTLNIC--------VMRPMTGLCQLPKRNGFGFKFP--KLSEALEYFGHSLEG 172 Query: 174 AHDAKADVYATLALVWLIRE 193 AH A D L ++ + Sbjct: 173 AHQAINDAEGALIVMRELMR 192 >gi|37528414|ref|NP_931759.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017433|sp|Q7MYS8|ORN_PHOLL RecName: Full=Oligoribonuclease gi|36787852|emb|CAE16967.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1] Length = 181 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 12/131 (9%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDP 55 M+ + + D E G D DR + A + D ++ V +D+ L D Sbjct: 1 MSKSEHNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILDEGPVIAVHQSDEQLALMDK 60 Query: 56 EAVFIT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 V G+ ++ + + E + +F I N++ D + Sbjct: 61 WNVRTHTGSGL-VERVKASKIDDREAEKATIEFLEKWVPAGASPICGNSVSQDRRFLFRY 119 Query: 110 FYRNFYDSYRW 120 + Sbjct: 120 MPELEAYFHYR 130 >gi|254372051|ref|ZP_04987544.1| oligoribonuclease [Francisella tularensis subsp. novicida GA99-3549] gi|254375197|ref|ZP_04990677.1| oligoribonuclease [Francisella novicida GA99-3548] gi|151569782|gb|EDN35436.1| oligoribonuclease [Francisella novicida GA99-3549] gi|151572915|gb|EDN38569.1| oligoribonuclease [Francisella novicida GA99-3548] gi|328676136|gb|AEB27006.1| Oligoribonuclease [Francisella cf. novicida Fx1] Length = 178 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G DV + + A + D+ I E D+ L + + Sbjct: 5 DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T Q+ + ++I +F + + N+I D + Y Sbjct: 65 HAETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKGFEKKNTHKALDDIRES 164 >gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213] gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213] Length = 215 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 26/201 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + F P + +PE++ G Sbjct: 23 VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + E + + + +I +N FD + + R Sbjct: 83 IDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKR---- 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + F + AH Sbjct: 139 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPF-----------DGKQAHS 185 Query: 177 AKADVYATLALVWLIREKKPK 197 A D T L + + Sbjct: 186 ALYDTERTAELFCAMVNRLKD 206 >gi|160931331|ref|ZP_02078731.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753] gi|156869715|gb|EDO63087.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753] Length = 172 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 15/161 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET D R + + + ++ EA + I+P Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVLMDQLIN-----PQGAPICAEARTVHHISP 68 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + R+ + ++ N FD + D+ W W Sbjct: 69 DDLATAP-TFTQVRPRLEDVVADR---VVMAWNAPFDRERIEAEYALAGLDAPAWPW--- 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 L + DG D A +L L Sbjct: 122 CCLMRLEASVMGCQWRRLDGPHRGLGDVIAARRRLIALQEM 162 >gi|291561739|emb|CBL40538.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [butyrate-producing bacterium SS3/4] Length = 324 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 26/237 (10%) Query: 2 TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 +F+++D E G++ +++R + V+++ + EK+ +P Sbjct: 1 MKNFIVFDLEWNQNPGGKEASVERLPFEIFEIGAVKLNEEREKVAEFH-RIIRPCVYRQM 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +T ++ ++ RDG A F I D + + Sbjct: 60 HRIISEVTHVSIEELERDGEPFAAVME---DFLKWCGEDCIFCTWGSMDLTELQRNMVYH 116 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + DV + DG S D+ SF L A Sbjct: 117 GMTIPF------PKPFLFYDVQKLYSLCYQDGKARISLDEAVESFALDVDAPF------- 163 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 H A D T ++ + K + + Y + ++ VS MF Sbjct: 164 -HRALGDAEYTGRVLQAMDFDSVKDYVSVDYYLPPESEDEEFTLRFPEYTKFVSQMF 219 >gi|171909847|ref|ZP_02925317.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Verrucomicrobium spinosum DSM 4136] Length = 200 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 54/196 (27%), Gaps = 26/196 (13%) Query: 2 TNHFVIYDYETF----GRDVALD-RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDP 55 + H +I D E G+ + + V +D + E + F KP + P Sbjct: 12 SPHLLIIDLEATCCDRGKVPRDEMEIIEIGAVLLDGKTLETVSEFGTFI-KPVRHPVLTP 70 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T IT + + E ++ + C+ + + + + Sbjct: 71 FCTKLTTITQAEVDAAPM-FPEALAKLKAWLEPYPDCMFSSWGAYDKGQFQLDCAFHDLP 129 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + + N ++ +A + + P +L+ H Sbjct: 130 YPFSEAHLN----------LKKAFAEARGLKKRPGMGQALGMLRLEL--------EGTHH 171 Query: 176 DAKADVYATLALVWLI 191 D +V Sbjct: 172 RGIDDARNMARIVARC 187 >gi|304311523|ref|YP_003811121.1| Oligoribonuclease [gamma proteobacterium HdN1] gi|301797256|emb|CBL45476.1| Oligoribonuclease [gamma proteobacterium HdN1] Length = 184 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 10/130 (7%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55 MT+ + + D E G D DR + A V ++ E + VF D+ L D Sbjct: 1 MTDRKTNLIWIDLEMTGLDPDQDRIIEIATVITNKDLEILAEGPVFAVHQPDEILNGMDE 60 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 G + + V +A+ + +F T I N+I D + Sbjct: 61 WCTTQHGKSGLTARVRASTVNDAQAEAQTIEFLKEWVDPRTSPICGNSICQDRRFLYRYM 120 Query: 111 YRNFYDSYRW 120 + Sbjct: 121 PALEGYFHYR 130 >gi|296119553|ref|ZP_06838111.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295967436|gb|EFG80703.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 223 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 46/169 (27%), Gaps = 24/169 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET + R A +R+ + T A I GIT ++ Sbjct: 11 FDLETTSVNTREARIVTSAVLRIAGPDVVKKETLA-----DPGVEIPEAAAKIHGITTEQ 65 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 A +G E + +D+ ++ Y +D Sbjct: 66 ARAEGRPHDEVLQETVNAIKAA-----------WDEGFT--------LIVYNAPYDLSVL 106 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R D F P I L DL +E NAH+ Sbjct: 107 RNLTGDFTVTGPVFDPYLIDRVKDRYRKGKRTLGDLCKEYRVELGNAHE 155 >gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] Length = 234 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D I+ T F +P + + A+ G Sbjct: 19 VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFNG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E + I + +I +N FD + RN Sbjct: 79 IDPFSPLRGAVPEDEVIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERN--- 135 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + + + + +D + L A GIE N A Sbjct: 136 NIKRTPFHPFVSFDTTSLA----------------GLALGQTVLAKACRAAGIEFDNSQA 179 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L LI + Sbjct: 180 HSALYDTERTAELYCLIVNR 199 >gi|160935985|ref|ZP_02083359.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC BAA-613] gi|158441227|gb|EDP18944.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC BAA-613] Length = 337 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 29/240 (12%) Query: 4 HFVIYDYETFGRDVA--LD-------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++++D E + + D + V+++ +E+ + +P Sbjct: 2 NYIVFDLE-WNQSPNGKEDSVEHLPFEIIEIGAVKLNGNFEQTGTFHKLI-RPKVYKKMH 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + +T + + ++G R + C + ++ + +++ Sbjct: 60 FKISEVTHMDMAELRQEGEPFDVVMNRFLAWCGEEEYCFCTWGSMDLTELQRNMAYHK-- 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + D+ + Y DG L G+E Sbjct: 118 ---LPNPFPRPLLYLDIQKLYCLQY------------GDGKNKVSLDMAVQIQGMEEERP 162 Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 H A D Y T ++ ++ + + + Y + + +VS F + Sbjct: 163 FHRALDDAYYTGRILSVLDMETFGTYVSVDYYGLPRNKAEEYRLHFPEYSKYVSREFDSR 222 >gi|47223800|emb|CAF98570.1| unnamed protein product [Tetraodon nigroviridis] Length = 248 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 4/95 (4%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M+ V D E G D+ D+ + A + D + D+ L Sbjct: 2 MSQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDGMSEWCK 61 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT 91 G + Q + + F Sbjct: 62 EHHGKSGLTQAVRNSKITLEQAEYEFLSFVRQHTP 96 >gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] Length = 217 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 58/201 (28%), Gaps = 26/201 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + F + + DPE++ G Sbjct: 23 VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAFEGANIDPESLKFNG 82 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + +E + + + + II +N FD + R Sbjct: 83 IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L M A + AH Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQ-----------------AAKIPFDSQQAHS 185 Query: 177 AKADVYATLALVWLIREKKPK 197 A D T L + + Sbjct: 186 ALYDTERTAELFCYMVNHLKQ 206 >gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] Length = 184 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M ++ FV D+ET + V+V + ES + Sbjct: 1 MADNAFVALDFET--ANGKRTSICSVGMVKVINN-QITESFYTL---VNPFDYFTETNIN 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P+ E + +F + + +N FD ++ Sbjct: 55 VHGIRPENVEDAPSFEY-VYPYMLKFINE---LPVVAHNAAFDMNVLHQSLKSLNIETPS 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ Q R A + L+ L ++ HDA Sbjct: 111 MTY--------------------FCSYQLAKRTIDAYRYGLKHLMNHYQLDFHGHHDALN 150 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D A + + + + L L Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173 >gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810] Length = 229 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F KP + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M LA + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|323974622|gb|EGB69741.1| exonuclease [Escherichia coli TW10509] Length = 282 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 50/190 (26%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + +++ Y + G S E AH A AD Sbjct: 210 MTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMAA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii DSM 44385] gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 236 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 47/173 (27%), Gaps = 32/173 (18%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + R A V + S A I GI+ + Sbjct: 21 FDLETTGTNPLQARIVTSALVSIHG-----GSANSTELLADPGIEIPESASQIHGISTEY 75 Query: 68 ALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 A G + R I+ + T I+ +N +D Sbjct: 76 AREHGEPHDDVLHKTIRAIYDGWERGQTLIV-FNAA----------------------YD 112 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R + + F P + KL L GI+ NAH+ Sbjct: 113 LTILRHLEPSFVCSGLVFDPLVMGRALEPQRTGPRKLGTLVKRYGIQLDNAHN 165 >gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 232 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMQTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|167522769|ref|XP_001745722.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776071|gb|EDQ89693.1| predicted protein [Monosiga brevicollis MX1] Length = 320 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 58/196 (29%), Gaps = 10/196 (5%) Query: 7 IYDYETF---GRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62 + D+E R + + +D + E +++ + + +P + +TG Sbjct: 103 VMDFEATCEEERSPFPHEIIEIPAILLDAKSGELLDTFQT-YVRPKLNPQLSKFCTNLTG 161 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + E + F +++ + +F D + Sbjct: 162 ITQDQV-DAAKLFPEAWQDFEDFLGKAVQKFKASHDVDDVRVLCASDGPWDFRDFLAFQC 220 Query: 123 DNGNSRWDLLDVMRAI---YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAK 178 + + ++W + A + L + A G+ H Sbjct: 221 QLSQMDYPAVCQQWMDVRKRLTKHFKLKWAGPERAAYATGLDFMLQAVGLTFEGRPHSGI 280 Query: 179 ADVYATLALVWLIREK 194 D LV ++ ++ Sbjct: 281 DDSRNIARLVQVLIDE 296 >gi|149912277|ref|ZP_01900850.1| exonuclase [Moritella sp. PE36] gi|149804647|gb|EDM64704.1| exonuclase [Moritella sp. PE36] Length = 234 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 19/188 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D+ET G + D V + +++S A + V I Sbjct: 42 MNSDILAVDFETTGLNAKQDNILSIGYVELAGSKIRLDSCYHQIV--AAHCELVGDNVTI 99 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT ++ G A + + ++ + + F + Sbjct: 100 HNITDKE-KASGRPLASVVEDLLAALA--GKTMLVH----------YAQIEKTFLEQACI 146 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + ++D + A + ++ + L +L G+ +AH+A D Sbjct: 147 KLYGMAPIFPVIDTL----ALAKKRHDRGNQAYAPSRLHLSNLREEYGLPRYSAHNALND 202 Query: 181 VYATLALV 188 AT L Sbjct: 203 AIATAELF 210 >gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65] gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65] Length = 222 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 28/219 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ--WEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V +D + KP + + A+ TG Sbjct: 19 VVVDVETAGFNSQTDALLEIAMVIMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFTG 78 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I P A +G + + I + V I+ +N FD + RN Sbjct: 79 IDPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNNIK 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + +G L + + S KL + ++ +AH Sbjct: 139 RSPFHPFSGFDTATLSGLALGHTVLA-------------RSCKLAGI----DFDNHSAHS 181 Query: 177 AKADVYATLALVWLIRE--KKPKLFEYLYDYRNKNQLRK 213 A D T L LI K+ +++ Y+ K + Sbjct: 182 ALYDTQKTAELFALIVNKWKQLGGWDWAYEQHVKENEKD 220 >gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium ATCC 27725] gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium ATCC 27725] Length = 188 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G Q +G+ + +++ F+ KP EA+ I G Sbjct: 2 KILFIDTETGGI-TEKSALIQLSGIV--QIGKEVAEEFNFYVKPFPGSEVTDEALKIQGR 58 Query: 64 TPQKALR---DGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T ++ + + VV +F + +++ N ++G N+RFD RN Sbjct: 59 TREEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNG--- 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + + LD ++ I A Q + KL+ GIE AHD+ Sbjct: 116 --EKYLFSYIQATTLDPLQWIAAL-----QLLKKIPVLKDNKLETWCNHFGIEL-KAHDS 167 Query: 178 KADVYATLALVWLIREKKPK 197 D+ AT AL + + Sbjct: 168 LEDIKATKALTKKMMLLMRE 187 >gi|89094457|ref|ZP_01167397.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92] gi|89081349|gb|EAR60581.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92] Length = 209 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 20/191 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET DV V++ + K+ S++ K +++ I I Sbjct: 36 LDCETTSLDVKQGEIVSIGAVKI--KGRKVLSSDRLDIKLKPPKSLTGDSIKIHKIRESD 93 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 G+ + ++ +F N I+GY + Sbjct: 94 LAG-GIDIEDALEQVLEFV--GNRPILGYYVNYDIRMLD--------------KFIRPQF 136 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 + L + + D I+W G + ++ I + H A D + Sbjct: 137 GFGLPNKAIELSHVYHDIIKW-KSVGGNVDLRFDTISKQLDIPMLERHTAIGDALTVALM 195 Query: 188 VWLIREKKPKL 198 ++ P Sbjct: 196 YVRLKYGDPPD 206 >gi|261367316|ref|ZP_05980199.1| exonuclease family protein [Subdoligranulum variabile DSM 15176] gi|282570920|gb|EFB76455.1| exonuclease family protein [Subdoligranulum variabile DSM 15176] Length = 318 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 34/202 (16%) Query: 4 HFVIYDYE--------TF---GRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 + +++D E TF G ++ Q R++ + +++ EV +P Sbjct: 2 NLIVFDLEWNIGYQPKTFLYHGTELTLRGEIIQIGAARINEWGDVLDTFEVNL-RPRIFR 60 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 +TG++ G+ + +F D + + Sbjct: 61 KLQHHIAKVTGLSQGDL-DAGMP---MKEGLQKFLDWAGPDAELAEWGLDDVPVLKQNLF 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 N D R L R L+ + GI Sbjct: 117 LNGLDERWPERWYDLQRIFLQTYPR----------------KEGEGMTLESVVDRLGIPK 160 Query: 172 VNA-HDAKADVYATLALVWLIR 192 H+A D T + + Sbjct: 161 EEPFHNALDDALYTAKICRKLP 182 >gi|256821737|ref|YP_003145700.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM 16069] gi|256795276|gb|ACV25932.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM 16069] Length = 182 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 7/126 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G D D + A + D+ +E V +D+ L + V Sbjct: 6 DNLIWVDLEMTGLDPETDVVIEIATIVTDKDLNILEEGPVIAIHQSDEVLDNMNEWCVVQ 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ + + E + S +F + N+I D + + Sbjct: 66 HGKSGLTERVRQSSINEDQASDLTLEFLKKWIDEGKSPMCGNSICQDRRFMVKHMPKLEA 125 Query: 116 DSYRWS 121 + Sbjct: 126 YFHYRH 131 >gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR] gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR] Length = 215 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 16/136 (11%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51 M F V+ D ET G + D + A V +D + ++S + KP + Sbjct: 9 MKQRFRGYMPVVVDVETAGFNAKTDALLEIAAVLLDFDDDGILKPVDSVH-YHVKPFEGA 67 Query: 52 LPDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYY 105 + A+ GI P A+ +G E + I + ++ +N FD + Sbjct: 68 NIEQAAIDFNGIDPHCPLRGAVEEGEALRELFKPIRKAQKAAGCQRSVLVGHNSNFDHGF 127 Query: 106 SRNIFYRNFYDSYRWS 121 R + Sbjct: 128 MMAAAERANLKRNPFH 143 >gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] Length = 221 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 25/199 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D ++ F K P A+ + Sbjct: 21 VVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGANLHPSALALNK 80 Query: 63 ITPQKALRDGVVEAEFSRRIHQF------FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + II +N FD + R D Sbjct: 81 IDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSFIMAAIER-ISD 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNA 174 + N + D + L G + A Sbjct: 140 TNNNMNVNPFHPFVTFDTAALSGLVFGQTV-------------LATACKHAGIVFDKSKA 186 Query: 175 HDAKADVYATLALVWLIRE 193 H A D T L + Sbjct: 187 HSALYDTEKTAILFCELVN 205 >gi|126326996|ref|XP_001381185.1| PREDICTED: similar to CGI-114 protein [Monodelphis domestica] Length = 333 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + D+ L Sbjct: 135 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDSMSEWCK 194 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 195 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 254 Query: 114 FYDSYRW 120 + Sbjct: 255 MKHLHYR 261 >gi|78486054|ref|YP_391979.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2] gi|78364340|gb|ABB42305.1| conserved hypothetical protein containing exonuclease domain [Thiomicrospira crunogena XCL-2] Length = 293 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 61/211 (28%), Gaps = 35/211 (16%) Query: 7 IYDYETFGRDVALDRPAQFA--GVRVDRQWE--KIESTEVFFCKPADDYLPDPEAVFITG 62 I D ET G D + + V D Q +I + + F +P + E +TG Sbjct: 45 IIDTETTGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNFLNEPEGE--ISAEVTQVTG 102 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T + AE + + + +N FD Sbjct: 103 LTLDDVKGHQIPWAEVEADM------ADVQLCVAHNAAFDRPVVERYSD----------- 145 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +D + A D S + L G AH A DV Sbjct: 146 -------CFIDKVWGCSAVQVD----WFHLAKVGSRSQEFLCWKVGQFFYGAHRALDDVQ 194 Query: 183 A-TLALVWLIREKKPKLFEYLYDYRNKNQLR 212 A T L + I E F +L + ++ Sbjct: 195 ALTHLLTFPISEAALPAFHFLLASVRQQKVL 225 >gi|238796040|ref|ZP_04639551.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969] gi|238719985|gb|EEQ11790.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969] Length = 181 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 65 THTGSGL-VERVKASPFSDHDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] Length = 174 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 36/197 (18%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEA 57 + +++ D ET G D ++ KI KP +P Sbjct: 7 DKYIVVDLETTGLDPFS------GCEIIEIGITEIVNNKIGRNYSRLVKPK-GIIPS-HI 58 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 IT IT +E + F I +N +FD + + Sbjct: 59 TNITSITNDMVEDAESLE----TVLPNFRKYVGDTTIIAHNAKFDLKFLNYYLDLLGLEK 114 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 L++++ ++ + KL+ I + +AH A Sbjct: 115 INNH-------ICTLEMLKRCKSYKG------------KNKKLETACNYYNIVNEHAHRA 155 Query: 178 KADVYATLALVWLIREK 194 +D AT L I+++ Sbjct: 156 NSDTLATAKLFLTIKDE 172 >gi|55821577|ref|YP_140019.1| DNA polymerase III subunit epsilon [Streptococcus thermophilus LMG 18311] gi|55737562|gb|AAV61204.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus LMG 18311] Length = 196 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E F + Q + V++ + ++++ + F + +TG Sbjct: 5 ETYIAFDLE-FNTVDGVSHIIQVSAVKMGQH-KEVDQFDSF---VYSNVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E+ F NT +IGYN ++ D N + Y Sbjct: 60 ITADKIAKAPKLES-VLAEFKAFI--GNTPLIGYNALKSDLPI-LAENGLNLEEQYA--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ D A +GI + KL +A GI+ + H++ D Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAQIYKKFLELDDN 171 >gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces sp. AA4] gi|302438162|gb|EFL09978.1| oligoribonuclease [Streptomyces sp. AA4] Length = 202 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 15/129 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +H V D E G D+ D + A + D + ADD D + Sbjct: 1 MNDHLVWIDCEMTGLDLGKDALIEIAALVTDADLNVLGEGVDIVIH-ADDAKLDGMPQVV 59 Query: 61 T------GITPQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRN-- 108 G+T ++ AE +R+ ++ + N+I D + Sbjct: 60 HDMHAKSGLT-EEVRASTTTLAEAEQRVLEYIREWVPDPASAPLAGNSIATDRGFIARDM 118 Query: 109 -IFYRNFYD 116 R+ + Sbjct: 119 PELDRHLHY 127 >gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] Length = 262 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D ET G + + + ++V + E + + + F V +TGI Sbjct: 75 FCFVDIETNGG-IDKGQIIEIGAIKVRAK-EILNTFKTFVYASN----IPENIVELTGIH 128 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 S + F + +N++FD + + + Sbjct: 129 TNDLKNAPH----LSNVLENFRLFLGDSVFVAHNVKFDYGFISESLQKIGFGGLLN---- 180 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R D +D+ + A A + L L GIE+ + H A +D + Sbjct: 181 --RRIDTIDLAKRTIA--------------AQKYGLSSLKELLGIENEH-HRAFSDALSC 223 Query: 185 LALVWLIREKKP 196 + +K P Sbjct: 224 YEIFKFCTQKLP 235 >gi|90420422|ref|ZP_01228329.1| polymerase III, epsilon subunit and related 3'-5' exonucleases [Aurantimonas manganoxydans SI85-9A1] gi|90335150|gb|EAS48903.1| polymerase III, epsilon subunit and related 3'-5' exonucleases [Aurantimonas manganoxydans SI85-9A1] Length = 260 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 3 NHFV-IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V + D ET G + D + + VD I + C PA +P A + Sbjct: 13 PTIVRVIDVETAGHRLEDDAVIEIGSIDVDLATGVIGNPLQTLCDPA-GVAINPHARRVH 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQ 84 I+ AE R Sbjct: 72 QISDAMLDGAP-PFAEAVRPFAS 93 >gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 54/223 (24%), Gaps = 41/223 (18%) Query: 3 NHFVIYDYETFGRD---VALDR-----------PAQFAG---VRVDRQWEKIESTEVFFC 45 + + D ET G A R + VR + W+ +S + Sbjct: 11 DRIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQ---R 67 Query: 46 KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + +V + GI+P + + F ++ ++ + + Sbjct: 68 RIQPGGPVSKASVEVHGISPAELKNAP-SFRDILDEFEAFI---GQDVLLAHSAENEMAF 123 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 + R + + + D+ R + P L L Sbjct: 124 LNFEYARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPG--------------SLDVLCD 169 Query: 166 AN---GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 + H A D T + + + Sbjct: 170 RLWVDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSF 212 >gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565] gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565] Length = 225 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 26/205 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D Q + + F +P + + A+ TG Sbjct: 18 VVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEKAALEFTG 77 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + II +N FD + R Sbjct: 78 IDPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + + ++ AH Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------SARIPFDNKEAHS 180 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A D T L I + + + Sbjct: 181 ALYDTERTTELFCHIVNRWKSMGGW 205 >gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] Length = 260 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 31/213 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E+ G + + + V++ + ++++ E F K + +TGI Sbjct: 72 FCIVDIESTGG-INSGQILEIGAVKI-QNHKELDRFESF-VKVDE---IPLNITELTGIE 125 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +R + F N + +N++FD + Y + Sbjct: 126 LNMVKDAPN----LTRVLEAFRLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLN---- 177 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + +D + ++ +KL L IE + H A D A Sbjct: 178 --RKICTIDFAQCC--------------IESSHYKLDALKEILKIESTH-HRALNDALAA 220 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 + K P + + + + KL + Sbjct: 221 AEIFKYCLSKLPPHIKTTEELIHFTKTAKLKNK 253 >gi|238756168|ref|ZP_04617488.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473] gi|238705642|gb|EEP98039.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473] Length = 181 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLALMDEWNVRT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ ++ +++ + F I N++ D + Sbjct: 66 HTGSGL-VERVKASPFSDSDAEMQTIAFLEQWVPAGKSPICGNSVGQDRRFLFRYMPALE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AYFHYR 130 >gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] Length = 249 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 53/223 (23%), Gaps = 31/223 (13%) Query: 6 VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +I D ET G + V + + +F DP+A I Sbjct: 9 IILDTETTGMSSSGHPYEGHNIIEIGAV---EMINRELTGNLFHVYINPKRSVDPKAFEI 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ +E F I +N FD + + R + Sbjct: 66 HKISDNFLKDKP-TFSEIVDDFVDFIRNSELII---HNASFDVGFINHELSR--IEYSFC 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 S D L + R+++ L L I+ H A Sbjct: 120 SIKKICRITDTLKIARSLFPG--------------KKNSLDALCDRYHIDRSKRSVHSAI 165 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 D + L+ + D K Q Sbjct: 166 LDAKILSEIYKLMTGGQISFNFDH-DLEKKENFLNQYYFQRKR 207 >gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7] gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7] Length = 177 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V + + ++ + V + GI Sbjct: 2 NFVALDFET--ASNQRHSACSVALTVVRKS-KIVDHYYSL---IKPETEFFWRNVQVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E +I FF+ +I +N+ FD + Sbjct: 56 TENDVKDAP-SFPEVWEQIKPFFTENK--LIVAHNLPFDRGVLQGCLDYYDLPQ------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L +++ + + KL + I N H+A D A Sbjct: 107 ---PHFQTLCTVQSSRKLITEI----------PNHKLNTVCDHLNISLKNHHNALEDSNA 153 Query: 184 TLALVWLIREK 194 A++ + + Sbjct: 154 CAAILLYLEDH 164 >gi|157418213|ref|YP_001481285.1| YacC [Escherichia coli APEC O1] gi|169546444|ref|YP_001711895.1| YacC [Escherichia coli] gi|331652519|ref|ZP_08353530.1| exonuclease superfamily [Escherichia coli M718] gi|88770263|gb|ABD51700.1| YacC [Escherichia coli APEC O1] gi|168830996|gb|ACA34777.1| YacC [Escherichia coli] gi|331049625|gb|EGI21691.1| exonuclease superfamily [Escherichia coli M718] Length = 282 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N+ + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNSRFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH AD Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSTIADARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|323128029|gb|ADX25326.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 195 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 5 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 58 TGITSDKIAAAPKVE-EVITAFKDFVGELP--LIGYNAQKSDLPI-LAENGLDLSDQYQ- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 113 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 154 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 155 ARMTAAIYKSFLETDTN 171 >gi|301156619|emb|CBW16090.1| oligoribonuclease [Haemophilus parainfluenzae T3T1] Length = 182 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K ++ + Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELLNKMSEWCVK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + E + F I N+I D + Sbjct: 65 THTA---NGL-VERVKASKITERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFLYKYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PDLADYFHYRH 131 >gi|170727178|ref|YP_001761204.1| exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] gi|169812525|gb|ACA87109.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] Length = 226 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 49/180 (27%), Gaps = 20/180 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D E G D D+ V +++ + E K ++ I GI Sbjct: 43 LLAIDLEMTGLDAQFDQILSIGIVPIEKGRLILSKAEHKLVKIEGSV---GQSATIHGIL 99 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 V E F ++ ++ D + + +F Sbjct: 100 DHHLNSA-VSPEEAMTW---FLERCQGQMLVAHHSPLDLAFLQKGLSTHFR------QRV 149 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + + + ++ + +L G+ AH+A D A Sbjct: 150 TLMAIDTLAIEKRRLMRQHEVLK-------EGALRLGASRARYGLPVYAAHNALIDAIAC 202 >gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92] gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92] Length = 209 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 66/226 (29%), Gaps = 35/226 (15%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYL 52 M N F V+ D ET G + D + A V +D I+ + +P + Sbjct: 1 MANRFRGFLPVVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGAN 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106 + A+ TGI P R+ V E + I + ++ +N FD + Sbjct: 61 LEQSALDFTGIDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFV 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R N + D + L Sbjct: 121 NAAANRADIK------RNPFHPFSTFDTATLGGLAFGQTV-------------LARACQV 161 Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 GIE AH A D T L LI + +L + ++ Sbjct: 162 AGIEFDGKQAHSALYDTMKTAELFCLIVNRWKELGGWEMAESFQDD 207 >gi|325281116|ref|YP_004253658.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324312925|gb|ADY33478.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 163 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V + E +++ KP +Y + + Sbjct: 1 MQNFAAIDFET--ANNERSSVCSIGIVIVRGE-EIVDTFYSLI-KPEPEY-YNYWCSQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ + E ++I + +N FD+ + +F D Sbjct: 56 GLCSNDTTDAP-IFPEVWKQIEPLIK---GLPLVAHNKPFDESCLKAVFRVYQMD----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 Y F + +L +A G + N H A AD Sbjct: 107 --------------YPDYEFYDTLCASRQAFPELENHQLHTVAATCGYQLENHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus DSM 2379] gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus DSM 2379] Length = 304 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 32/179 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITG 62 + D ET G + + D + V D +I + D P DPE +TG Sbjct: 48 LCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDPCRPLDPEVTAVTG 107 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT G + + + + S + C +N +FD + Sbjct: 108 ITDDML--AGQSLDDAA--VGKIVSQASLCFC--HNCKFDRSFLER-------------- 147 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R+ + + F+ Q +++ TS L+ L G ++AH A D Sbjct: 148 -----RFPEFEKL----PFACTMSQIDWKNELVTSRTLEYLLYKCGACFIDAHRALNDA 197 >gi|89255617|ref|YP_512978.1| oligoribonuclease [Francisella tularensis subsp. holarctica LVS] gi|134302673|ref|YP_001122642.1| oligoribonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|156501565|ref|YP_001427630.1| oligoribonuclease [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010118|ref|ZP_02275049.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC200] gi|187932223|ref|YP_001892208.1| oligoribonuclease [Francisella tularensis subsp. mediasiatica FSC147] gi|254367012|ref|ZP_04983048.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257] gi|254368614|ref|ZP_04984630.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022] gi|290953723|ref|ZP_06558344.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1] gi|295312909|ref|ZP_06803630.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1] gi|122501292|sp|Q2A5M3|ORN_FRATH RecName: Full=Oligoribonuclease gi|166216258|sp|A7N9M1|ORN_FRATF RecName: Full=Oligoribonuclease gi|166216260|sp|A4J020|ORN_FRATW RecName: Full=Oligoribonuclease gi|89143448|emb|CAJ78624.1| Oligoribonuclease [Francisella tularensis subsp. holarctica LVS] gi|134050450|gb|ABO47521.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|134252838|gb|EBA51932.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257] gi|156252168|gb|ABU60674.1| oligoribonuclease [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121517|gb|EDO65708.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022] gi|187713132|gb|ACD31429.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella tularensis subsp. mediasiatica FSC147] Length = 178 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G DV + + A + D+ I E D+ L + + Sbjct: 5 DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T Q+ + ++I +F + + N+I D + Y Sbjct: 65 HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 164 >gi|306826686|ref|ZP_07459989.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus pyogenes ATCC 10782] gi|304431134|gb|EFM34140.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus pyogenes ATCC 10782] Length = 208 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAEKGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 168 ARMTAAIYESFLETDTN 184 >gi|308067866|ref|YP_003869471.1| Inhibitor of the KinA pathway to sporulation, exonuclease [Paenibacillus polymyxa E681] gi|305857145|gb|ADM68933.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Paenibacillus polymyxa E681] Length = 230 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 24/190 (12%) Query: 5 FVIYDYE-TFGRDVALD-RPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++IYD E T R+ V+V D ++ F +P++ + + V Sbjct: 10 YIIYDLEFTVSRNARYSSEIIDIGAVKVVQGDDGLYVADTFHSF-VRPSNRPVLSTDTVQ 68 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT + + E ++ + + + + + Sbjct: 69 FTGITQRDIDAAPL-FPEAVKQFVTWLGTDSPYYLCAWGPDDRQKLVSHCRTHHV----- 122 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAK 178 L + + S + L Q L L N H A Sbjct: 123 -----------DLGWIHNTNDIQKQISRLLSSNGKYRQLSLSQALELCNIDFDGQQHRAL 171 Query: 179 ADVYATLALV 188 D T + Sbjct: 172 DDAVNTAQVF 181 >gi|124007771|ref|ZP_01692473.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134] gi|123986717|gb|EAY26498.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134] Length = 185 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 8/149 (5%) Query: 5 FVIYDYETFGRDVALDRP---AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +VI D E + +R + V + + + ++ + F KP + +T Sbjct: 3 YVIVDLEATCWETRENRANETIEIGAVCIGNEGKWVDEFDTF-VKPVTHPVLSEFCTQLT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 IT + + E Q+ + + ++ + + N + Sbjct: 62 SITQEMVDDAPL-FPEALDDFQQWINNCANGDQYVLCSWGYYDRVQFKNDCLLHNLPTQW 120 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 S + ++ + MR + Sbjct: 121 LASHISLKHQYADIKNMRRPIGMKKALQK 149 >gi|56270497|gb|AAH87528.1| LOC496097 protein [Xenopus laevis] Length = 223 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D + A + D + + K D+ L Sbjct: 42 MGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIKQPDELLDGMSDWCK 101 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + Q + + F P C + N++ D + R Sbjct: 102 EHHGKSGLTQAVRESRITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPRF 161 Query: 114 FYDSYRW 120 + Sbjct: 162 MRHLHYR 168 >gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031] gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031] Length = 229 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F KP + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M LA + AH Sbjct: 143 RNPFHPFGMFDTASLSGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAELFCYMVNH 203 >gi|120555687|ref|YP_960038.1| oligoribonuclease [Marinobacter aquaeolei VT8] gi|166216266|sp|A1U4D2|ORN_MARAV RecName: Full=Oligoribonuclease gi|120325536|gb|ABM19851.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 180 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D +R + A + D Q + + + + Sbjct: 5 DRLIWIDLEMTGLDPEQERIIEMASIITDSQLNIVAEGPVIAIHQPDSLLEQMDEWCTRT 64 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFY 111 A +T Q+ + EAE ++ +F P + N+I D + Sbjct: 65 HGASGLT----QRVKESTISEAEAEQQTLEFLGKHLEPGQSPLCGNSIGQDRRFLVKYMP 120 Query: 112 RNFYDSYRW 120 + + Sbjct: 121 KLEAFFHYR 129 >gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 484 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 25/190 (13%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +D ET + +F + V + +PA+ L P +V Sbjct: 13 IAFFDVETT-IPFRAGQGYAILEFGSILVCPKKLVELRNYSVLVRPANLNLITPRSVKCN 71 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI + A+ + ++ G+N ++FD F D Sbjct: 72 GIKREDVESA-ATFADIADTVYDIL--HGRIWAGHNILKFDCPRISEAFAEIGRDPPE-- 126 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L ++ A K+ LA G+ + H + DV Sbjct: 127 ---PKGTIDSLALL------------TQRFGRRAGDMKMATLASYFGLGN-QTHRSLDDV 170 Query: 182 YATLALVWLI 191 L ++ Sbjct: 171 RMNLEVLKYC 180 >gi|115314122|ref|YP_762845.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|122325833|sp|Q0BNX6|ORN_FRATO RecName: Full=Oligoribonuclease gi|115129021|gb|ABI82208.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18] Length = 178 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G DV + + A + D+ I E D+ L + + Sbjct: 5 DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T Q+ + ++I +F + + N+I D + Y Sbjct: 65 HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 164 >gi|94989217|ref|YP_597318.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS9429] gi|94993104|ref|YP_601203.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS2096] gi|94542725|gb|ABF32774.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS9429] gi|94546612|gb|ABF36659.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS2096] Length = 208 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSNKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 168 ARMTAAIYKSFLETDTN 184 >gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 218 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 26/211 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + K T F +P + PEA+ G Sbjct: 20 VVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQPEALIFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E + + I+ +N FD + R Sbjct: 80 IDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAAANRTKIK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ L AH Sbjct: 140 HNPFHPFATFDTAALSGLVLGQTVLLKAC-----------------LTAGIPFNTSEAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207 A D T L + + +L + + Sbjct: 183 ALYDAERTAELFCELVNRWKRLGGWTKVTTS 213 >gi|312795486|ref|YP_004028408.1| Oligoribonuclease [Burkholderia rhizoxinica HKI 454] gi|312167261|emb|CBW74264.1| Oligoribonuclease (EC 3.1.-.-) [Burkholderia rhizoxinica HKI 454] Length = 204 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 19/177 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV----- 58 + + D E G DR + A V D + V +D L +A+ Sbjct: 20 NLIWLDMEMTGLLPNTDRIIEVAVVVTDSNLTVVVEGPVLAIHQSDSTL---DAMDQWNK 76 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN----- 108 G + ++ V EA+ + ++ F S + N+I D + Sbjct: 77 NTHGRSGLIERVRASSVTEADAAAQLLAFLSQYVPAGKSPMCGNSICQDRRFMARWMPEL 136 Query: 109 IFYRNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 + ++ + + RW + A D ++ L Sbjct: 137 EAFFHYRNLDVSTLKELCRRWQPAVYKGFQKRALHTALADIHESIDELKYYREHFLR 193 >gi|261823163|ref|YP_003261269.1| oligoribonuclease [Pectobacterium wasabiae WPP163] gi|261607176|gb|ACX89662.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium wasabiae WPP163] Length = 180 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G + DR + A + D + V D L D V Sbjct: 5 NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVLAVHQPDSQLALMDDWNVRT 64 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + E F I N+I D + Sbjct: 65 HGSSGLTDRVKASTTDEHAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRYMPELEA 124 Query: 116 DSYRW 120 + Sbjct: 125 YFHYR 129 >gi|307578072|gb|ADN62041.1| ribonuclease T [Xylella fastidiosa subsp. fastidiosa GB514] Length = 198 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G + + A + + D PA Sbjct: 1 MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 60 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106 DP+++ +TGI A + + + I+ +N FD + Sbjct: 61 IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R Y + + L + + A Sbjct: 121 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 163 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 164 LDWNAADAHSAVYDAEKTAHLFCTITN 190 >gi|238784781|ref|ZP_04628783.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970] gi|238714294|gb|EEQ06304.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970] Length = 181 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQTDEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 65 THTGSGL-VERVKASPFSDHDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3] gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3] Length = 235 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 80/250 (32%), Gaps = 44/250 (17%) Query: 1 MTNHF--------------VIYDYETFGRDVALDRPAQFA--GVRVDRQWE-KIESTEVF 43 MT+ F V+ D ET G + D + A +++D +++ T + Sbjct: 5 MTDTFDHNKLKNRFRGYFPVVIDVETAGFNSKTDALLEIAVTMLKMDDDGVLQLDKTLHY 64 Query: 44 FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYN 97 +P + +PEA+ GI P LR V E E I + + II + Sbjct: 65 HIEPFEGANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKEVKKAQKASECHRSIIVAH 124 Query: 98 NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 N FD + RN + + + +D + Sbjct: 125 NAAFDHGFVSEAIERNGLK---RTPFHPFATFDTAALA----------------GLAIGQ 165 Query: 158 FKLQDLALANGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215 L GI N AH A D T L LI + L + Y + + + Sbjct: 166 TVLAKACAMAGIPFDNREAHSALYDTERTAELFCLIVNRWKSLGGWPYIADESDPEAEDV 225 Query: 216 DIQNMTPLVH 225 ++ P+ Sbjct: 226 AEADVKPIAE 235 >gi|153217654|ref|ZP_01951335.1| oligoribonuclease [Vibrio cholerae 1587] gi|229519881|ref|ZP_04409314.1| oligoribonuclease [Vibrio cholerae TM 11079-80] gi|297582247|ref|ZP_06944163.1| oligoribonuclease [Vibrio cholerae RC385] gi|124113399|gb|EAY32219.1| oligoribonuclease [Vibrio cholerae 1587] gi|229343122|gb|EEO08107.1| oligoribonuclease [Vibrio cholerae TM 11079-80] gi|297533548|gb|EFH72393.1| oligoribonuclease [Vibrio cholerae RC385] Length = 181 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + V E E + F I N+I D + Sbjct: 66 HTASGL----VARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|113969858|ref|YP_733651.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] gi|113884542|gb|ABI38594.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] Length = 228 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 43/176 (24%), Gaps = 20/176 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D E G D D+ V ++ + S + + ++ I GI Sbjct: 46 DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQGSV---GQSATIHGILDNHL 102 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 V E F S I+ ++ D + + + Sbjct: 103 TEA-VSIEEAMAW---FVSQTRGHILVAHHSPLDCRFLQQDILS------IYHQAIVIPA 152 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + S +L G+ AH A D A Sbjct: 153 IDTL-------LLEKHRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTDALAC 201 >gi|325103810|ref|YP_004273464.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] gi|324972658|gb|ADY51642.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] Length = 214 Score = 61.4 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 29/202 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADD 50 M ++ + D ET G D P Q + + +I+ F +D Sbjct: 1 MKDYLLFIDTETSGLPKRWDLPYTNNLNWPYALQISWIIYHPDGTEIKRENYFIN--END 58 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 +++ I GIT G + R++ + IIG+ + Sbjct: 59 VTISKDSIKIHGITEDFLKSHGKKRKDILRKLAYDIKKFDPLIIGH--------FVELDI 110 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 + D R N + M + FS + KL +L + Sbjct: 111 HVLSVDYLRARIKNPFKGRNFFCTMLKSHDFSKN--------PRIKFLKLSELFEYLFDK 162 Query: 171 H-VNAHDAKADVYATLALVWLI 191 H + H+A+ D + + Sbjct: 163 HPADLHNAEKDAEHAADCFFEL 184 >gi|153940748|ref|YP_001391589.1| exonuclease family protein [Clostridium botulinum F str. Langeland] gi|152936644|gb|ABS42142.1| exonuclease family protein [Clostridium botulinum F str. Langeland] gi|295319617|gb|ADF99994.1| exonuclease family protein [Clostridium botulinum F str. 230613] Length = 253 Score = 61.4 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 70/207 (33%), Gaps = 30/207 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q ++++ + I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + + + ++Y+ Sbjct: 58 PFVKNLTNLTMDSLNKA-KSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYQLD 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S + N + A++ + +P + S + L + ++ + Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLS---NAVQLFHITKNNDF 160 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H+A D + T + I +K + Y Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKMRTKIY 187 >gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] Length = 213 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M ++ FV D+ET + V+V + ES + Sbjct: 30 MNHNAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFYTL---VNPFDYFTETNIN 83 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P+ E + QF + +N FD + ++ Sbjct: 84 VHGIKPEDVEGAPSFEY-VYPYMLQFIDQ---LPVVAHNAAFDMNVLHQSLKQLNIETPS 139 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ Q R A + L+ L ++ HDA Sbjct: 140 MTY--------------------FCSYQLAKRTIDAYRYGLKHLMNHYKLDFHGHHDALN 179 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D A + + + + L L Sbjct: 180 DAKACAMITFRLLKHYDDLPSML 202 >gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1] gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1] Length = 220 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|114332250|ref|YP_748472.1| oligoribonuclease [Nitrosomonas eutropha C91] gi|122313081|sp|Q0ADS5|ORN_NITEC RecName: Full=Oligoribonuclease gi|114309264|gb|ABI60507.1| Exonuclease, RNase T and DNA polymerase III [Nitrosomonas eutropha C91] Length = 181 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 +N+ + D E G + D + A V D Q + V D L D Sbjct: 5 SNNLIWIDMEMTGLNPNTDCIIEIALVVTDAQLNTVAEAPVLVISQPDSVLNGMDKWNQS 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + K + EAE R+ F + + + N+I D + + Sbjct: 65 THGKSGLIDKVKASTLSEAEAEARMLAFLAPYVPADISPMCGNSICQDRRFLARCMPQLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AYFHYR 130 >gi|330815929|ref|YP_004359634.1| oligoribonuclease [Burkholderia gladioli BSR3] gi|327368322|gb|AEA59678.1| oligoribonuclease [Burkholderia gladioli BSR3] Length = 202 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61 + V D E G + DR + A V + +K V +D+ L +A Sbjct: 19 NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETLARMDAWNQSTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111 G + + V EAE + RI F + P + N+I D + + Sbjct: 79 GRSGLIDRVRASTVSEAEAAARIQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPELESF 138 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW + A D ++ L Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191 >gi|291222534|ref|XP_002731271.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 954 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 72/264 (27%), Gaps = 54/264 (20%) Query: 6 VIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V++D ET G D Q A + + P A +TG+ Sbjct: 497 VVFDLETTSFGID---SSICQIAA---SYDGKIFDEY------VDPCQPIHPAASNVTGL 544 Query: 64 TPQKALRDGVVEAEF--------SRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN 113 T G + F + F N+ ++ +N FD + R Sbjct: 545 T----YTCGKLFHNFNLVPTLSQKDALESFIEWIPLNSVLVAHNCKNFDARILVSSVQRY 600 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 L + FS + +S+ ++L + Sbjct: 601 GL---------------LDKLKHKHCCFSDTLSVFREILPPRSSYSEENLVNDYLHTEYS 645 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYD-----------YRNKNQLRKLIDIQNMTP 222 AH+AK DV+ L+ + ++ + K L L + + Sbjct: 646 AHNAKHDVHMLQQLIGKCNVDISHISKHSFSVDFIIEALEFLLCKKKNLSSLSQLISKKV 705 Query: 223 LVHVSGMFGASRSNTALIAPVAWH 246 + A+ +A++ Sbjct: 706 ITKCMAEKIAASGLAFCHLNLAYN 729 >gi|260770593|ref|ZP_05879525.1| oligoribonuclease [Vibrio furnissii CIP 102972] gi|260614423|gb|EEX39610.1| oligoribonuclease [Vibrio furnissii CIP 102972] gi|315178350|gb|ADT85264.1| oligoribonuclease [Vibrio furnissii NCTC 11218] Length = 181 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + A + D Q + V + L D Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEIATIVTDSQLNILAEGPVLAVHQPESELQKMDDWCTNT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + ++ + V E + + F I N+I D + R Sbjct: 66 HTQSGLVERVRQSQVSEDDAVAQTIAFLEQWVPAGKSPICGNSIGQDRRFLYKHMPRLEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|160932735|ref|ZP_02080124.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753] gi|156867809|gb|EDO61181.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753] Length = 293 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 29/222 (13%) Query: 5 FVIYDYETFGR-----DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 FVI D E G + +F V+V+ + ++ V KP + Sbjct: 3 FVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSV-VVKPQIGKKLSSKVKN 61 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I+ ++ GV + +F N ++ + + +Y Sbjct: 62 LTNISSEEL-GLGVTYTRAVSKFKKFL--GNAVLMTWGTSDILALMENHQYYW------- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 G R D ++ Y + + L A GI+ H A Sbjct: 112 -----GTDRLDYIE----GYVNLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRA 162 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 D LA + + + ++ +K+Q + + Sbjct: 163 LDDSLLALACFRRL--YDEEELKPFFEDASKDQFYDKMRFKT 202 >gi|154493796|ref|ZP_02033116.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC 43184] gi|154086409|gb|EDN85454.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC 43184] Length = 174 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 28/193 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+E + V + + I+S + +P ++ I Sbjct: 1 MERFAAIDFEI--ANGKRSSICSIG-VAIIEDNKVIDSVYML-VRPYPNF-YTRFTTAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT Q + E E RI + +N FD+ R Sbjct: 56 GITMQDTIDSPDFE-EAWTRIAGRLQD---IPLVAHNSSFDEGCLRAA------------ 99 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D+ Y F + +LQ +A G + H A AD Sbjct: 100 -------HEAYDLAYPKYQFYCTCRLSRRMYPFLANHQLQTVAAHCGYDLTYHHHAMADA 152 Query: 182 YATLALVWLIREK 194 YA + + + Sbjct: 153 YACAHIAATMMRE 165 >gi|290958841|ref|YP_003490023.1| hypothetical protein SCAB_44151 [Streptomyces scabiei 87.22] gi|260648367|emb|CBG71478.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 201 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 24/200 (12%) Query: 2 TNHFVIYDYE-TF---------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 FVI+D E T L Q +R++ ++ ++S + +P + Sbjct: 1 MPTFVIFDLEFTTWPGAMEQHWSGPGRLREIVQIGALRLNEEYAVVDSYDTL-VRPVVNP 59 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + P +TGI Q RDG+ A F + N++ Sbjct: 60 VLSPYFTTLTGIGQQAVDRDGLAPARALGDFLAF-CQGQSVFSYGNDMVVVGENIGWARA 118 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R + L+ + A G W + Sbjct: 119 RGEEIGPSALTPGFVNLRPWLNAVAPATAGVNSGRLWKALGLPRP------------GVP 166 Query: 172 VNAHDAKADVYATLALVWLI 191 + H A D ++ + + Sbjct: 167 GDEHAALFDCHSIALALRHL 186 >gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio rerio] gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio rerio] Length = 235 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 31/210 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET G D + Q A V + +F A ITG + Sbjct: 13 VFFDLETTGLD-SSCEIVQLAAV---SGGH---TFNLFMV---PRRPFQRGASRITGFSV 62 Query: 66 QK----ALRDGV---VEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + R + E F + + ++G+N RFD S Sbjct: 63 KHQRLFLHRRPLLTSSLKEALLSFISFLRMLDHPLLLGHNIRRFDCPVLARALDEFSLRS 122 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +G D L + R + +D G SFK + L AH+A Sbjct: 123 HFQREVSGF--VDTLPLARQL-----------LKDHGLQSFKQESLVKNLLGVSYAAHNA 169 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRN 207 DV A L W ++ ++ ++ + + Sbjct: 170 LEDVQALQKLYWKLKPSANQIQQHTFTLDS 199 >gi|260805280|ref|XP_002597515.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae] gi|229282780|gb|EEN53527.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae] Length = 279 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 61/207 (29%), Gaps = 18/207 (8%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E +F + V+ + +E +C+P + P + Sbjct: 68 LLVIDFEATCMEENPPDFQHEIIEFPILLVNTETLIVEDQFHSYCRPTINPKLTPFCTKL 127 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + + + + S GY + + + Y+ Sbjct: 128 TGITQKMVDKAPE-FPQVLEDVLDWMSSK-----GYGMGHSRFAVATDGPWDMCRFLYQ- 180 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + + R + + + KLQ++ + G++ H + Sbjct: 181 -----QCLYCGIPYPRPFRRWINVKKHFANFYQTRGGTKLQEMLASLGLQFEGKPHSGRD 235 Query: 180 DVYATLALV-WLIREKKPKLFEYLYDY 205 D + LI++ + Sbjct: 236 DAVNIARIAGRLIQDGCELRVNECLNN 262 >gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] Length = 1405 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 51/355 (14%), Positives = 114/355 (32%), Gaps = 34/355 (9%) Query: 5 FVIYDYETFGRDVALDRPA------------QFAGVRVDRQWEKIESTEVFFCKPADDYL 52 ++I+D ET G + + P + + V +D + + I + + KP + Sbjct: 2 YIIFDTETTGLPLDFNTPIINIINLPLPRLVKLSWVLLDEKLQLI-ELKDYIIKPEGYEI 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P + I GI+ + A+ G+ + N + +N+ FD F R Sbjct: 61 PF-NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSN--FLIGHNVFFDIKIVCAEFIR 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + +++ ++ + ++WP+ L +L + Sbjct: 118 IHKKISFFKKKIIDTKEISIN---YCAIKMGEKLKWPT---------LTELYKKLFNDTF 165 Query: 173 NAHDAKADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 AHD+K+DV AT L+R L + I+++ + + Sbjct: 166 IAHDSKSDVLATTKCFFELLRIGIISLNKVYLKKELLINNINRINLKKNKKIKLKNFNIE 225 Query: 232 ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291 S + + H + +++ ++ + D + T + L G+ Sbjct: 226 NQISKNKYYSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGI---TDYGNLMGVFNFI 282 Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346 + ++N + K I + ++ + Q YN Sbjct: 283 NRIKNINDN--FLVKKKIKPIIGCELYISYNDLIKKTDKIYNQVFFAKNKNGYYN 335 >gi|227488026|ref|ZP_03918342.1| DNA polymerase III, epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227542667|ref|ZP_03972716.1| DNA polymerase III, epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227091888|gb|EEI27200.1| DNA polymerase III, epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227181550|gb|EEI62522.1| DNA polymerase III, epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 224 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 30/192 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D ET D + +R+D + + + EA + GI+ Sbjct: 10 VAFDLETTTNDPLKAHVVTSSVIRIDGS-----NADETYLLADPGIPISEEAEKVHGISN 64 Query: 66 QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + A +G + + + +I +N + Sbjct: 65 EYAKANGEPHDDVVAKTVELIRRGWDEGFTLIVFNGCFDLTILHQCS------------- 111 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + ++ Y + A L ++ I AH++ AD Sbjct: 112 ----PDFTIDGLVVDPYIIDKKKDHY-----RAGKRNLSAMSEYYEIRLDKAHNSSADSL 162 Query: 183 ATLALVWLIREK 194 A + W + Sbjct: 163 AAARIAWKQARR 174 >gi|153831492|ref|ZP_01984159.1| oligoribonuclease [Vibrio cholerae 623-39] gi|148873026|gb|EDL71161.1| oligoribonuclease [Vibrio cholerae 623-39] Length = 181 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + V E E + F I N+I D + Sbjct: 66 HTASGL----VARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739] gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC 8739] Length = 220 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-KPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|238764684|ref|ZP_04625628.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638] gi|238697080|gb|EEP89853.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638] Length = 181 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 11/173 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPLRDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ Q+ +++ + +F I N++ D + Y Sbjct: 65 THTGSGL-VQRVKDSPFSDSDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFR--YMP 121 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 ++Y S L + + + + +LA Sbjct: 122 ELEAYFHYRYLDVSTLKELARRWKPEILAGFKKKNTHQALDDIRESVAELAYY 174 >gi|157821045|ref|NP_001101050.1| three prime repair exonuclease 2 [Rattus norvegicus] gi|149029940|gb|EDL85052.1| rCG43845 [Rattus norvegicus] Length = 236 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 61/209 (29%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRV----------DRQW-----EKIESTEVFFCK 46 FV D E G +D A+ + V D ++ + C Sbjct: 8 ETFVFLDLEATGL-PNMDPEIAEISLFAVHRSSLENPERDDSGSLVLPRVLDKLTLCMC- 65 Query: 47 PADDYLPDPEAVFITGITPQ--KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + R R + F S C++ +N +D Sbjct: 66 --PERPFTAKASEITGLSSEGLMNCRKAAFNDAVVRTLQGFLSRQEGPICLVAHNGFDYD 123 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + G + G S+ L Sbjct: 124 FPLLCTELQRLGAHLPRDT-----VCLDTLPALRGLDRVHSHGTR----AQGRKSYSLAS 174 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV L + Sbjct: 175 LFHRYFQAEPSAAHSAEGDVNTLLLIFLH 203 >gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 30/186 (16%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +F+ D+ET G + AG+ V R E T + +P + + I G Sbjct: 5 NFIAIDFETATG---KRASICE-AGICVVRNGEVT-KTRSWLVRPQGNR-YSYWNMQIHG 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P + E I ++ I+ +N FD R+ + ++ Sbjct: 59 IRPNDTVDSPE-FPEVWAEISEYLKDIP--ILVAHNAAFDVGCIRHSLELYGMEKPDITY 115 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +RA G L L I + H A D Sbjct: 116 ---------YCSLRAARKLYDFGCN-----------SLDYLCDQFKIPYGRHHRAGDDAE 155 Query: 183 ATLALV 188 L Sbjct: 156 MCARLF 161 >gi|197335542|ref|YP_002157176.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] gi|197317032|gb|ACH66479.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] Length = 213 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 65/205 (31%), Gaps = 20/205 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D ET + A +++ + ++ +++ K + +++ I Sbjct: 28 DELVSIDCETTSLNPNHAELVSIAAIKI--KNNRVLTSQTIHLKLTPPQSLNSDSIKIHQ 85 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q G+ E + ++ +F N I+GY+ R+D R+F S Sbjct: 86 LRHQDL-HHGLSEQQAMTQLLEFI--GNRPIVGYHI-RYDKKILDRACLRHFSHPLPNS- 140 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++ + + + ++ ++ G+ HDA D Sbjct: 141 -----------LIEVSHIYHNKLERLLPNAYY--DLSIEAISKHLGLPQTERHDALEDAI 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 A + + + + Sbjct: 188 AAALIYVRLTHGDFPDIPSSKNAHS 212 >gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3] gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3] Length = 222 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D I+ T F +P + +PEA+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + S + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L + GI N A Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAELFCHIVNR 200 >gi|304393986|ref|ZP_07375910.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130] gi|303293961|gb|EFL88337.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130] Length = 230 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 34/188 (18%) Query: 7 IYDYETFGRDVALDRPAQFAG---VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G + A + D + +I T KP EA+ + I Sbjct: 9 VIDTETTGFLPDAS-MVEIAWTDLLVGDDGFAEIGETISHLLKPKH--PIGLEAMAVHHI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ + + +N FD + W Sbjct: 66 TEAMVADAP-----MLGQLDPQ-PSIGSDYLAAHNADFDK----------GFYPVDREW- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++ D PS +G + L A + + AH A D Y Sbjct: 109 --------ICTLKCSRRLWEDA---PSHKNGVLRYWLNLDADMDYDRTLPAHRAGPDSYV 157 Query: 184 TLALVWLI 191 T L+ + Sbjct: 158 TAYLLERM 165 >gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1] Length = 220 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMSDITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-23m63] gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] Length = 168 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 26/194 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D ET G D G+ + + +++ + +T Sbjct: 1 MKEYVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRL---IKPKGIISSFITELT 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ + + +E R ++ I +N +FD + + Sbjct: 58 HISNEMVENEEPLEL-VLPRFRKYI---GDRTIIAHNAKFDLKFLNYYLRMLNLEPINN- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +++++ ++ + KL+ IE++NAH A +D Sbjct: 113 ------YICTVELLKKCKSYKG------------KNKKLETACAYYNIENINAHRADSDT 154 Query: 182 YATLALVWLIREKK 195 AT L I+++ Sbjct: 155 LATAKLFLKIKDEY 168 >gi|302879370|ref|YP_003847934.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] gi|302582159|gb|ADL56170.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] Length = 181 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59 NH V D E G + DR + A V D E I V D + +A Sbjct: 5 QNHLVWIDMEMTGLNPDTDRIIEVAIVVTDSNLETIAEAPVLVVHQPDSIMDGMDAWNKS 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNF 114 G + ++ + EA S ++ F + N+I D + Sbjct: 65 THGKSGLIERVKASTLNEAAVSAQMVAFLKEYVPIRTSPMCGNSICQDRRFMARWMPEFE 124 Query: 115 YDSYRW 120 + Sbjct: 125 EYFHYR 130 >gi|228476985|ref|ZP_04061623.1| DNA polymerase III subunit epsilon [Streptococcus salivarius SK126] gi|228251004|gb|EEK10175.1| DNA polymerase III subunit epsilon [Streptococcus salivarius SK126] Length = 196 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E F Q + V++++ E+++ + F D +TG Sbjct: 5 ETYIAFDLE-FNTVDGFSHIIQVSAVKMEQH-EEVDQFDSFVYS---DVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E+ F +T +IGYN ++ D + + D Y Sbjct: 60 ITADKIAKAPKLES-VLADFKSFV--GDTPLIGYNALKSDLPI-LSENGLDLEDQYA--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ D A +GI + KL +A GI+ + H++ D Sbjct: 113 ------LDIFDEAFDRRASDLNGI---------VNLKLTSVAEFFGIK-GHGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAQIYEKFLELDEN 171 >gi|310831493|ref|YP_003970136.1| putative helicase/exonuclease [Cafeteria roenbergensis virus BV-PW1] gi|309386677|gb|ADO67537.1| putative helicase/exonuclease [Cafeteria roenbergensis virus BV-PW1] Length = 870 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 56/198 (28%), Gaps = 34/198 (17%) Query: 7 IYDYETFGRDV------------ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 I D ET G R + + + + + I+ + + Sbjct: 691 ILDTETTGLPKQRPFNPNNTSAYDNARMIELGYIIYNTKGDIIKKYNNL---INHNIKIN 747 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 FI GIT + G++ + +Q + ++ +N+ FD N YR Sbjct: 748 --NSFIHGITSDICSKKGLIIDDVLDTFYQDLKECD--VLVCHNVDFDKNILLNEIYR-I 802 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + N S L + +Y W ++ + Sbjct: 803 KKMELYEHLNNKSTICTLKKTKELYGKRTKLSDWYKKN--------------FNDNTIQN 848 Query: 175 HDAKADVYATLALVWLIR 192 H A DV T + + Sbjct: 849 HRALDDVIMTGKCFFKCK 866 >gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1] Length = 229 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 54/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L M A + AH Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAELFCYMVNH 203 >gi|116687265|ref|YP_840511.1| exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia HI2424] gi|116652980|gb|ABK13618.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia HI2424] Length = 293 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 12/109 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + A + DR + T V A I GIT Sbjct: 130 LFIDTETTGLDH-QAAIVEIAIL--DRAGAVLIDTLV-----KPAMPIPAAATEIHGITD 181 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ + + ++ +N FD+ + Sbjct: 182 ADVAGAPA-WNTIGPQVAELLA---GRLLIAHNGAFDERLLYQTSRSHG 226 >gi|238757512|ref|ZP_04618697.1| Oligoribonuclease [Yersinia aldovae ATCC 35236] gi|238704274|gb|EEP96806.1| Oligoribonuclease [Yersinia aldovae ATCC 35236] Length = 181 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 65 THTGSGL-VERVKASPFSDHDAELQTIEFLKQWVPAGISPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|297194244|ref|ZP_06911642.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486] gi|197720537|gb|EDY64445.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486] Length = 200 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 56/200 (28%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G + D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60 Query: 60 ITGITPQ--KALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 T L DG E + I + P + N++ D + Sbjct: 61 QMHTTSGLLDVLADGKTLADAEEQVLSYIREHVKEPGKAPLCGNSVGTDRGF-------L 113 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ + + P A N E Sbjct: 114 LRDMPTLEAFLHYRIVDVSSIKELARRWYPR-------------------AYFNSPEKSG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIRESIAELRYYRE 174 >gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1] gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1] Length = 261 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 4/110 (3%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G ++ D V + + +P+A + G T + Sbjct: 34 FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVS-TWLINPHQPMNPKASEVNGFTDEY 92 Query: 68 ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + E EF R N ++ YN ++ + + Sbjct: 93 LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHL 142 >gi|94991158|ref|YP_599258.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10270] gi|94544666|gb|ABF34714.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS10270] Length = 199 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 9 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 62 TGITSDKIAAAPKVE-EVITAFKDFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 117 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 158 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 159 ARMTAAIYKSFLETDTN 175 >gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 232 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|304406144|ref|ZP_07387801.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus curdlanolyticus YK9] gi|304344728|gb|EFM10565.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus curdlanolyticus YK9] Length = 223 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 9/129 (6%) Query: 2 TNHFVIYDYETFGRDVAL--DRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPE 56 +++YD E + V++ D+ +I+ + + KP + + Sbjct: 1 MRTYIVYDLEFTVLRKQQYAADIIEIGAVKLTDGDQGPIEIDRFQT-YVKPERNKVITTH 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGIT ++ + Q+ +T + D + + Sbjct: 60 TTEFTGITQEQVDAAP-TFPDAIDLFRQWI--GDTTYYLCSWGPDDKQHFVRQCRDMKIE 116 Query: 117 SYRWSWDNG 125 N Sbjct: 117 LNWLRNMND 125 >gi|163800878|ref|ZP_02194778.1| hypothetical protein 1103602000593_AND4_01408 [Vibrio sp. AND4] gi|159175227|gb|EDP60024.1| hypothetical protein AND4_01408 [Vibrio sp. AND4] Length = 207 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 14/210 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I + +T G + +F + D + +A I GIT Sbjct: 10 IILNTKTTGFG-SSAEIVEFTAICADSGKVIVNKL------VKPTCSIPAQATAIHGITD 62 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + FS + II YN F+ ++ +Y S Sbjct: 63 EDVQGAFDFHLVFSNHFLPLLN--GRPIIIYN-TDFETRMIIQSLEKHCNSAYLQSVQEL 119 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183 S + + YA W D L + ++ + AH A +D Sbjct: 120 LSIFCVPQCAMLWYAEFHGL--WDHEHDDFKWQSLSNACAQELVDVSDLTAHRALSDCEM 177 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 T L+ + K L D K+ Sbjct: 178 TRRLINAVNSKIDDQTNQLSDGVTKSSSEA 207 >gi|194439945|ref|ZP_03072006.1| YacC [Escherichia coli 101-1] gi|194421140|gb|EDX37166.1| YacC [Escherichia coli 101-1] Length = 282 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGVQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N+ + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNSRFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A AD Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|260773739|ref|ZP_05882654.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610700|gb|EEX35904.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 237 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 21/183 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D+ET G + D + + + + + ++ ++ + E + I P Sbjct: 53 VVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYV--ESEHCIEAETAVVNHIVP 110 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + L G+ E + + S ++ + + F D+ Sbjct: 111 ETLLG-GISRHELIECLVESLS---GKVVIAHG---------AEIEKQFLRQLLSLEDSL 157 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 LD MR + R +L + G+ AH+A ADV AT Sbjct: 158 PLPLIFLDTMRLERSL------IKYRGIMYPDLRLAHIREQKGLPPYLAHNAFADVVATG 211 Query: 186 ALV 188 L Sbjct: 212 ELF 214 >gi|332160015|ref|YP_004296592.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607428|emb|CBY28926.1| 3'-to-5' oligoribonuclease (orn) [Yersinia enterocolitica subsp. palearctica Y11] gi|325664245|gb|ADZ40889.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862350|emb|CBX72509.1| oligoribonuclease [Yersinia enterocolitica W22703] Length = 181 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPEKDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F T I N++ D + Sbjct: 65 THTGSGL-VERVKASPFNDHDAELQTIEFLKQWVPAGTSPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05] gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05] Length = 259 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 4/110 (3%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G ++ D V + + +P+A + G T + Sbjct: 32 FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVS-TWLINPHQPMNPKASEVNGFTDEY 90 Query: 68 ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + E EF R N ++ YN ++ + + Sbjct: 91 LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHL 140 >gi|152990271|ref|YP_001355993.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] gi|151422132|dbj|BAF69636.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] Length = 197 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 52/194 (26%), Gaps = 20/194 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D ET G D D A + V + + + + +++ I Sbjct: 22 DEIVFIDCETTGLDPKNDEILSIACLPVKKDKILLSK--ALYLELKPQKDISAQSIKIHH 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + E R+ F N + GY S+ + Sbjct: 80 LRACDLQGAMEP-KEAIERVLYFIK--NRPVAGYYVEFDVKMISKYTKKFFGF------- 129 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + + + + G K + + + AH+A D Sbjct: 130 --------TLPNKQIEVSGLYYDYKQKAIPQGFIDLKFDTILKDLNLPKLKAHNALNDTI 181 Query: 183 ATLALVWLIREKKP 196 + + + +++ Sbjct: 182 MSAMIYLKLIKRRQ 195 >gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile 630] gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-66c26] gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CIP 107932] gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-63q42] gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile ATCC 43255] gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-76w55] gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-97b34] gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-37x79] gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile CD196] gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile R20291] gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-32g58] gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile] gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CD196] gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile R20291] Length = 168 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 26/194 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V+ D ET G D G+ + + +++ + +T Sbjct: 1 MKEYVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRL---IKPKGIISSFITELT 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ + + +E R ++ I +N +FD + + Sbjct: 58 HISNEMVENEEPLEL-VLPRFRKYI---GDRTIIAHNAKFDLKFLNYYLRMLDLEPINN- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +++++ ++ + KL+ IE++NAH A +D Sbjct: 113 ------YICTVELLKKCKSYKG------------KNKKLETACAYYNIENINAHRADSDT 154 Query: 182 YATLALVWLIREKK 195 AT L I+++ Sbjct: 155 LATAKLFLKIKDEY 168 >gi|169841446|ref|ZP_02874559.1| exonuclease I [candidate division TM7 single-cell isolate TM7a] Length = 106 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 341 FKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + KP + D +S+LYDGF + D+ + + Q+ F D RL +++ Sbjct: 1 MLNLLKKPDFTPQADAESKLYDGFINNQDKLRSEVVRNLDQNQIKQYTPEFEDSRLKQIY 60 Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKL 440 RY+ARN+P+ LS E+ ++ E+RK L R + + L Sbjct: 61 PRYKARNYPNALSSDERIEYDEYRKNRLNRQ-LPGFLKDL 99 >gi|170730478|ref|YP_001775911.1| ribonuclease T [Xylella fastidiosa M12] gi|167965271|gb|ACA12281.1| ribonuclease T [Xylella fastidiosa M12] Length = 210 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G + + A + + D PA Sbjct: 13 MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 72 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106 DP+++ +TGI A + + + I+ +N FD + Sbjct: 73 IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 132 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R Y + + L + + A Sbjct: 133 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 175 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 176 LDWNATDAHSAVYDAEKTAHLFCTITN 202 >gi|126174849|ref|YP_001050998.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS155] gi|160875861|ref|YP_001555177.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|125998054|gb|ABN62129.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica OS155] gi|160861383|gb|ABX49917.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|315268052|gb|ADT94905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 228 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 51/184 (27%), Gaps = 20/184 (10%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D E G + D+ V ++R + E + ++ I GI Sbjct: 46 DLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQIRGSV---GQSATIHGILDNHL 102 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ +EA F + ++ ++ D + + + Sbjct: 103 VQAVTIEAAMGW----FINQTYGRVLVAHHAPLDCRFLQQDLLA------IYHQALVLPA 152 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D L + R I+ S +L G+ AH A D A L+ Sbjct: 153 IDTLMLERHRLLREHSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALACGELL 205 Query: 189 WLIR 192 Sbjct: 206 LAQM 209 >gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus torques L2-14] Length = 168 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 26/192 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V +D E+ G D D Q + + + E + S + + EA I I+P Sbjct: 3 VFFDIESTGLDPVRDEILQLSII--NENEEVLFSDYIRLVRHKTWN----EAEKINHISP 56 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E+ + I + F T +I YN + Sbjct: 57 EMVKDKQTFESR-KQEIQKIFDQA-TELIAYNANFDISFLKAVGI--------------- 99 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + + + FS ++ + KL A G E AHD+ D+ AT Sbjct: 100 --VLPDVPISDPMIDFSFVYREYSEKYGIFKWQKLVVAARYYGYEFD-AHDSLEDIKATK 156 Query: 186 ALVWLIREKKPK 197 + ++EK K Sbjct: 157 FVYDKMKEKSQK 168 >gi|188589093|ref|YP_001920974.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] gi|188499374|gb|ACD52510.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] Length = 243 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 27/198 (13%) Query: 4 HFVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 ++++YD E F + D Q V+++ E + + KP P Sbjct: 2 NYIVYDLE-FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFN-RLIKPTVHTEIHP 59 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T IT + + ++ +F + + +N+ + N Sbjct: 60 FIKDLTQITTEMVNSEKY-FSDVYDDFIKFIGNKEFTVCIW-GTSDIKELLKNVKFHNLE 117 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + Y + D+ ++ ++ G + N H Sbjct: 118 EIY-----DLRKYIDVQNLA----------SKYIKTQKGTKVGLKAAIEFFNLPIEKEFH 162 Query: 176 DAKADVYATLALVWLIRE 193 DA D Y T + + Sbjct: 163 DAFNDAYYTAQIFKKLYT 180 >gi|312140423|ref|YP_004007759.1| exonuclease [Rhodococcus equi 103S] gi|311889762|emb|CBH49079.1| exonuclease [Rhodococcus equi 103S] Length = 199 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 12/151 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M + V D E G + D+ + A + D + D+ L Sbjct: 1 MQDKLVWIDCEMTGLRLGSDKLIEIAALVTDSDLNILGEGVDIVIHADDEALADMPDVVT 60 Query: 59 FIT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + G+T ++ V AE I + V T + N+I D + Sbjct: 61 QMHAKSGLT-EEVRASTVTLAEAEQMVLAYIREHVPVAGTVPLAGNSIATDRGFI--ARD 117 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 DS+ S L + Sbjct: 118 MPELDSHLHYRMIDVSSIKELCRRWYPRIYF 148 >gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] Length = 210 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 26/205 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V++D + T + P + +P A+ G Sbjct: 18 VVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFNG 77 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P ALR + E+E + + + +I +N FD + R Sbjct: 78 IDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERC--- 134 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + +D + G T A + AH Sbjct: 135 NIKRTPFHPFVSFDTTSLA--------------GLALGQTVLVKACRAAGIAFDQSEAHS 180 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A D T L + + L + Sbjct: 181 ALYDAQKTTELFCFMVNRYKALGGW 205 >gi|302877099|ref|YP_003845732.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307687794|ref|ZP_07630240.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|302579956|gb|ADL53968.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 255 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 32/243 (13%) Query: 4 HFVIYDYE-------TFGRDVALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++IYD E + A + Q +++ +E + + KP Sbjct: 2 NYIIYDLEFNQEYLHSSEVQSANNSSLPFEIIQIGALKLTENFETVANFNSLI-KPTVYP 60 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + P +T I + +F T + + Sbjct: 61 IIHPYVESLTKINDSMVSSC-ETFPQVYEDFLEFIGNDETTLCVWGISDI------KELL 113 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 RN S + D+ ++ ++ P++ S ++L N + Sbjct: 114 RNIKFYNLPSSTISKNYIDI-------QKYASKHLRTPNKSRIGLS---TAISLLNIPTN 163 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYL--YDYRNKNQLRKLIDIQNMTPLVHVSGM 229 HDA D Y T + I K Y+ + R K K+ + + + Sbjct: 164 GQFHDAFNDAYYTTEVFKHIYNNNIKTTTYIPNFSRRVKQSKEKIDTVALINQFEKMYNR 223 Query: 230 FGA 232 + Sbjct: 224 EMS 226 >gi|222622820|gb|EEE56952.1| hypothetical protein OsJ_06659 [Oryza sativa Japonica Group] Length = 348 Score = 61.0 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 41/201 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G DVA DR + A + D + I + + Sbjct: 169 LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 228 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 A +T Q+ L+ + E + ++ F + +I N++ D + + Sbjct: 229 ASGLT----QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLK------ 278 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++DV + + R Sbjct: 279 ----NYMPQLAAIFSHVIVDVSSIMALCIRWYPKERKRTPQK----------------GK 318 Query: 174 AHDAKADVYATLALVWLIREK 194 H A D+ ++A + + Sbjct: 319 KHRAMNDIKESIAELKYYEDN 339 >gi|72162668|ref|YP_290325.1| oligoribonuclease [Thermobifida fusca YX] gi|71916400|gb|AAZ56302.1| exonuclease [Thermobifida fusca YX] Length = 213 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 9/129 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D + A + D + +++ KP + L F+ Sbjct: 1 MNDSLVWIDCEMTGLDLKKDALIEVACLITDGELNQLDEGINVVIKPPQEALDQMG-EFV 59 Query: 61 T--GITPQKAL--RDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 T T +GV AE I ++ P + N+I D + R Sbjct: 60 TQMHTTSGLLAELENGVTLAEAEQLVLDHIRRYIPEPKKVPLCGNSIATDRAFLARDMPR 119 Query: 113 NFYDSYRWS 121 + Sbjct: 120 VDEHLHYRM 128 >gi|324115837|gb|EGC09771.1| exonuclease [Escherichia coli E1167] Length = 285 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 53/202 (26%), Gaps = 26/202 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + + + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTTEALEIG--LTNASGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + + +R++ +I +N + W Sbjct: 157 QALCGAPL-WTDVARQLRHAI--GGRPVIIFNARFDIRILKQTAAAHRD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A AD T Sbjct: 210 MTVYCAMELAAGYYGVTN----------RYGTISLASAASQAGLTWEGLAHSAIADARMT 259 Query: 185 LALVWLIREKKPKLFEYLYDYR 206 +V I P L Sbjct: 260 AGVVNAIAAYHPSLMLMYAYIS 281 >gi|253690114|ref|YP_003019304.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756692|gb|ACT14768.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 180 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 44/171 (25%), Gaps = 9/171 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G + DR + A + D + V +D L D V Sbjct: 5 NNLIWIDLEMTGLNPERDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMDDWNVRT 64 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + E F I N+I D + Y Sbjct: 65 HGASGLTDRVKASTTDERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFR--YMPEL 122 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 ++Y S L + Q + L +LA Sbjct: 123 EAYFHYRYLDVSTLKELARRWKPEILTGFKKQGTHQAMDDIRESLAELAYY 173 >gi|163802739|ref|ZP_02196629.1| oligoribonuclease [Vibrio sp. AND4] gi|159173446|gb|EDP58268.1| oligoribonuclease [Vibrio sp. AND4] Length = 181 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P ++ E T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPKEELAKMDEWCTNT 65 Query: 62 GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 T ++ + E + + +F I N+I D + Sbjct: 66 HTTSGLVERVCHSQISEQDAVEQTIEFLQKWVPRGVSPICGNSIGQDRRFLYKHMPDLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75] gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75] gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3] gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86] gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] Length = 220 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 68/267 (25%), Gaps = 58/267 (21%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV--------------------- 88 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYAT 184 L M + + + ++ L + N ++ H A D Y T Sbjct: 89 -----LPEMPGEWICTMKLARRLWPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYIT 143 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 LI + + + P + + F + ++ VA Sbjct: 144 A--ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVA 188 Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 189 ERDPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|182417499|ref|ZP_02948826.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum 5521] gi|237666097|ref|ZP_04526085.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378668|gb|EDT76195.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum 5521] gi|237659044|gb|EEP56596.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 270 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 25/203 (12%) Query: 21 RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 Q V+++ +E I + KP+ P +TGI + + + Sbjct: 54 EIIQIGAVKLNDNFEIIATFN-RLIKPSLYKEIHPFIEELTGINTEMVATEKH-FPSVYK 111 Query: 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 +F + + + RN + +N D+ ++ Sbjct: 112 EFLKFIGSNDFVMCVWGIDDIKQLI------RNIHYHSLNIHNNIKKYIDIQNLA----- 160 Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE------- 193 + + G + N + H+A D T + + Sbjct: 161 -----SKEFNTPKGNRLGLKTAVEFWNIPIQNDFHNALNDAVYTCHVFKKVFNKNLKPSI 215 Query: 194 KKPKLFEYLYDYRNKNQLRKLID 216 + + K KLI Sbjct: 216 YSNPNYNRIPTNSLKVDTEKLIS 238 >gi|71276282|ref|ZP_00652560.1| Ribonuclease T [Xylella fastidiosa Dixon] gi|71898489|ref|ZP_00680661.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|182681822|ref|YP_001829982.1| ribonuclease T [Xylella fastidiosa M23] gi|71162890|gb|EAO12614.1| Ribonuclease T [Xylella fastidiosa Dixon] gi|71731802|gb|EAO33861.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|182631932|gb|ACB92708.1| ribonuclease T [Xylella fastidiosa M23] Length = 210 Score = 61.0 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G + + A + + D PA Sbjct: 13 MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 72 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106 DP+++ +TGI A + + + I+ +N FD + Sbjct: 73 IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 132 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R Y + + L + + A Sbjct: 133 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 175 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 176 LDWNAADAHSAVYDAEKTAHLFCTITN 202 >gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] Length = 217 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 26/201 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D + + F P + DPE++ G Sbjct: 23 VVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGANIDPESIKFNG 82 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + +E + + + + II +N FD + R Sbjct: 83 IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGFVMAAAQRMNAK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L M A + AH Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQ-----------------AAKIPFDSQQAHS 185 Query: 177 AKADVYATLALVWLIREKKPK 197 A D T L + Sbjct: 186 ALYDTERTAELFCYMVNHLKH 206 >gi|254514041|ref|ZP_05126102.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium NOR5-3] gi|219676284|gb|EED32649.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium NOR5-3] Length = 183 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 20/185 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+I D E G D A VRV+ + S E + ++ I + Sbjct: 2 SFLICDAEMSGLDPAKAELLSMGWVRVEGLEIVMGSAEHRLIRNRRSV---GQSATIHQL 58 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + + F C++ ++N R D + + F Sbjct: 59 RDCELREAD----DITEVLSDFLQAAAGCVLVFHNARLDTAFLDRAAKQAF--------- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + + G +L G+ H +AH+A D A Sbjct: 106 GTPLLLPTVDTLWLEQRLLQRQER----PIGQGDLRLGACRDRYGLIHHSAHNALTDAMA 161 Query: 184 TLALV 188 T L+ Sbjct: 162 TAELL 166 >gi|210614957|ref|ZP_03290405.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787] gi|210150481|gb|EEA81490.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787] Length = 190 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 61/196 (31%), Gaps = 29/196 (14%) Query: 6 VIYDYETFGRDVAL----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++YD ET G D +D Q + + KP + +A I Sbjct: 17 IVYDLETTGLYPFSPELGDEILSMCI--MDLQGSVLFEH---YFKP-EHTESWSKAAAIN 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP+K + F R Q +I YN I FDD + Sbjct: 71 GITPEKVENEKP--FSFYRDEVQRIFDAADILITYNGIHFDDSFLEAAG----------- 117 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 DVM +W KL + A E AHDA DV Sbjct: 118 --IEIPDVMQFDVMLKFAWL---MHEWDDYHKSWRWHKLINCAAYYNYEF-PAHDATEDV 171 Query: 182 YATLALVWLIREKKPK 197 ATL + +K K Sbjct: 172 RATLHCYTEMMFQKSK 187 >gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] Length = 219 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 58/265 (21%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V + + + +P D P+A+ I IT + Sbjct: 4 VIDTETCGL---QGGIVEIASVDI-VDGQIT-NPMSHLVRP--DRPISPQAMAIHRITEE 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E H + +N FD Sbjct: 57 MVADKPWIE-EIIPHYH------GSPWYVAHNASFDRRV--------------------- 88 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVYAT 184 L M + + ++ L N ++ H A D Y T Sbjct: 89 -----LPEMHGEGICTMKLARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYIT 143 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 AL+ I + + D + L F + +A +A Sbjct: 144 AALLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIA 188 Query: 245 WH-PRYKDSVIGCNLSGDMRVFQDL 268 + P Y + + L Sbjct: 189 ENDPGYLRWLFNNLDRMSPELRLTL 213 >gi|149578823|ref|XP_001514027.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 350 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 40 MGQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAKGPNLIIKQPDELLDSMSEWCK 99 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 100 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 159 Query: 114 FYDSYRW 120 + Sbjct: 160 MKHLHYR 166 >gi|293392189|ref|ZP_06636523.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952723|gb|EFE02842.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1] Length = 182 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + + K ++ + Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIHQPDELLNKMSEWCVK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + E + F T I N++ D + Sbjct: 65 THMA---NGL-IERVKASKLTERAAELQTLDFLKKYVPKGTSPICGNSVAQDKRFLFKYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PELADYFHYRH 131 >gi|157374891|ref|YP_001473491.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] gi|157317265|gb|ABV36363.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 228 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 20/177 (11%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D E G D D+ + +++ ++ E + ++ I GI + Sbjct: 46 VDLEMTGLDPNSDQILSIGLIPIEKGLLQLSRAEQKLIQINGSV---GQSATIHGIVDHQ 102 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 GV F ++ ++ D + + + + Sbjct: 103 LQ-AGVSIDSAIEW---FLDRTRGKLLVAHHSPLDLGFLQVAIKQVTGE------SIKLL 152 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + R D ++ + +L G+ AH+A D A Sbjct: 153 AIDTLALERKRLLRKQDVLK-------EGTLRLGACRARYGLPVYAAHNALVDALAC 202 >gi|123440753|ref|YP_001004745.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166216592|sp|A1JIQ8|ORN_YERE8 RecName: Full=Oligoribonuclease gi|122087714|emb|CAL10499.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 181 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F T I N++ D + Sbjct: 65 THTGSGL-VERVKASPFNDHDAELQTIEFLKQWVPAGTSPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|325577877|ref|ZP_08148110.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392] gi|325160307|gb|EGC72434.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392] Length = 200 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K ++ + Sbjct: 23 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELLNKMSEWCVK 82 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + E + F I N+I D + Sbjct: 83 THTA---NGL-VERVKASKITERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFLYKYM 138 Query: 111 YRNFYDSYRWS 121 + Sbjct: 139 PDLADYFHYRH 149 >gi|319786534|ref|YP_004146009.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1] gi|317465046|gb|ADV26778.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1] Length = 219 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 54/211 (25%), Gaps = 39/211 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYL 52 M F V+ D ET G D + A V ++ T PA Sbjct: 22 MARRFRGYLPVVVDVETGGFDWNRHALLEMAAVPIEMDEQGLLVPGKTAAAHFIPAPGTE 81 Query: 53 PDPEAVFITGITPQKALRDG----VVEAEFSRRIHQFFSV------PNTCIIGYNNIRFD 102 DP+++ +TGI L E + + I+ +N FD Sbjct: 82 IDPKSLEVTGI----VLDHPFRLAKPERDALGHVFNQVRAAVRRNGCQRAILVGHNAHFD 137 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + R+ + + + L + + Sbjct: 138 LNFVNAAVARSGHKRNPFHPFSVFDTVTLGGIAYGQTVLARALQ---------------- 181 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193 A + AH A D T L I Sbjct: 182 -AAGLEWDAREAHSAVYDAEQTAKLFCRIAN 211 >gi|108802442|ref|YP_642638.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119855268|ref|YP_935871.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] gi|108772861|gb|ABG11582.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697985|gb|ABL95056.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 193 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 9/101 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G D R A + V + P P I G+T Sbjct: 7 FVVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTL---LDPGVDPGP--TDIHGLT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 A+ + + S I+ +N FD + Sbjct: 62 TAMLAGQPR-YADIATDLAALLS---GRILVAHNAAFDYAF 98 >gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20] Length = 184 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV D+ET + V+V + ++ + + I Sbjct: 3 QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITKTFHTL---VNPQDYFSQQNIKIH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + + QF + + +N FD + + Sbjct: 57 GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + Q R + + L+ + ++ HDA D Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152 Query: 182 YATLALVWLIREKKPK 197 A + + + + Sbjct: 153 KACAMITFRLLKNYEN 168 >gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 2526 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 86/298 (28%), Gaps = 45/298 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + + +T G DR + V + + A I GI+ Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTL---INPRRSFSDSA--IHGIS 2182 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + V E E + I + I+ ++ F F R+ + Sbjct: 2183 ERMTVAAPVFE-EVADDIAELLDRR---ILIAHDAPFVSKQLGREFSRSNVKAIHL---- 2234 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + G++ L A G+++ ++H A D AT Sbjct: 2235 ---------------NDGYCTMSHSPKLLGSSGRSLSSALDAAGLKNEHSHCALDDAMAT 2279 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+ ++ K + +H +R + + Sbjct: 2280 ANLLNVLLH--------------KGAIAAKYPAMQFVSAIHPRRTPTVTREFVEMTESTS 2325 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT--SHDELKGLVPVPIKEVHLNKC 300 W + D + + Q LD V L + + T D K V + + + +N+ Sbjct: 2326 WISQIIDQLPTSGEADIDEFMQLLDIVMLDREVSTHERLDLYKQAVNLGLSQQDINRA 2383 >gi|167581087|ref|ZP_02373961.1| oligoribonuclease [Burkholderia thailandensis TXDOH] Length = 201 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55 + V D E G + DR + A V + + I ++ K D Sbjct: 19 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 75 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 G + + V EA+ + +I F P + N+I D + Sbjct: 76 ---NTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132 Query: 111 YRNFYDSYRW 120 + Sbjct: 133 PELERFFHYR 142 >gi|160893764|ref|ZP_02074548.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50] gi|156864749|gb|EDO58180.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50] Length = 216 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 56/194 (28%), Gaps = 31/194 (15%) Query: 5 FVIYDYETFGRD--------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DP 55 ++ D+E D + + + V++D +++I+S + + P Sbjct: 3 YIFVDFEMNQIDNSHPDELKICKNEIIEIGAVKLDDTYKEIDSFKTY---VKPGITPVTS 59 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +TGIT + +F+ + +F + + + Y D Sbjct: 60 RITNLTGITNEMVDDAP----DFAIAMDRFIAWGLSADVIYAWSENDLRQFNRER----- 110 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNA 174 ++ D + + ++ L D G + Sbjct: 111 ---------KLKSYNNPDAQKLASKWKDFQKEFARMLGTRRRLALSDAVFYLGEDFQGKE 161 Query: 175 HDAKADVYATLALV 188 HDA D T + Sbjct: 162 HDALWDARNTAEVF 175 >gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS] gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS] Length = 220 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLHWLFNNLDSMSPELRLTLKH 215 >gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4] gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7] gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4] gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7] Length = 222 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 66/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D I+ T F +P + +PEA+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + S + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L + GI N A Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A D T L I + L + Sbjct: 181 HSALYDTERTAELFCYIVNRWKHLGGW 207 >gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 232 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 63/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D L P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRLITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489] Length = 220 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|301166629|emb|CBW26205.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 273 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 27/196 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V E G ++A DR + V D ++ + D E + Sbjct: 28 MNENLV----E-NGLNLAKDRVTEIGAVLWDTEFNQPIKIYSELIHEEDRLPISEEIEEL 82 Query: 61 TGITPQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 TGI L+ G+ E + + I+ +N +D R +F R Sbjct: 83 TGINDIMLLKYGLQGDEIRMALERLSIIMKKADFIMAHNGPNYDIPMLRALFERFRVPFP 142 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 W + + + + L L A+G + H A Sbjct: 143 EMKWIDSKTDIEF--------------------PKRIIANSLSALEHAHGFINPFPHRAV 182 Query: 179 ADVYATLALVWLIREK 194 DV + L + + Sbjct: 183 TDVLSMLKVAAHYDFE 198 >gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN] gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN] gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus jensenii JV-V16] gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN] gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN] gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus jensenii JV-V16] Length = 177 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 28/195 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET R A V V + I+ D + + I Sbjct: 2 NFIAMDFETANRHPESA--CSLALVMVRNN-KIIDRFYTV---INPQMPFDGRNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP AE +I ++ +N RFD + R D Sbjct: 56 TPDDVKDAP-TMAEVWPKIKAL--YQPGMLVAAHNARFDANVLKMSLARYDIDE------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++D ++ F PD + KL +A A +E + H+A +D A Sbjct: 107 ---PHYLVIDTLKTSRLFEPDL----------PNHKLNTVAEALDVELWHHHNALSDSEA 153 Query: 184 TLALVWLIREKKPKL 198 ++ EK Sbjct: 154 CAGILIKQNEKMGDE 168 >gi|169847019|ref|XP_001830222.1| oligoribonuclease [Coprinopsis cinerea okayama7#130] gi|116508698|gb|EAU91593.1| oligoribonuclease [Coprinopsis cinerea okayama7#130] Length = 216 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 53/201 (26%), Gaps = 24/201 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 V D E G + D+ + A + + E ++ + + L D G Sbjct: 15 IVWVDLEMTGLNPQKDKIIEIAVLITNGNLELVDDGIQYIIRAEKSLLDGMDEWCTKQHG 74 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRN--- 113 + Q LR + + + ++ N++ D + Sbjct: 75 QSGLTQACLRSPYTTEYVKKEVLAYIKKWIPRQRVGVLAGNSVHVDRTFLAAEMPEIVDW 134 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + +R + + Y +W + + Sbjct: 135 LHYRIIDVSSVKVARLSVSPFDVSSYELQELSRRWFPNKVPPKNP-------------ES 181 Query: 174 AHDAKADVYATLALVWLIREK 194 +H A D+ ++ + RE Sbjct: 182 SHRALDDIQGSIQELKWYREN 202 >gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544] gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544] Length = 196 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 32/226 (14%) Query: 1 MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +F D+ET G A D A V R ++S PA+ Y Sbjct: 1 MM-NFTAIDFETATG---ARDSACSVA-VVTIRAGALVDSYYTLIQPPANRY--SYFNTK 53 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I G+T A+F+ + + ++ +N +FD R+ R + Sbjct: 54 IHGLTEADTANA----ADFAGIWPELEAKLEGQLVVAHNAKFDMSVLRSCLARYGLQAPA 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +S+ D + + R + + KL + + H HDA Sbjct: 110 FSY------CDTVAIARRAW-------------PNLANHKLGTVGAYLNL-HFRHHDALE 149 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 D A A+ + ++ + + + Sbjct: 150 DAKACAAIPIRAGLELADASMEALVQHLGVRVEAFESHGSASCGLF 195 >gi|42568689|ref|NP_200947.3| exonuclease family protein [Arabidopsis thaliana] gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana] gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana] Length = 487 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + + +F + V ++ ++++ V +PA+ L P +V Sbjct: 16 IAFFDVETT-IPFRVGQGYAILEFGSILVCPKKLVELKNYSVL-VRPANLNLITPRSVKC 73 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + A+ + ++ G+N ++FD R F D Sbjct: 74 NGIKREDVESA-LTFADIADTVYDIL--HGRIWAGHNILKFDCPRIREAFAEIGRDPPE- 129 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ + H + D Sbjct: 130 ----PKGTIDSLALL------------TQRFGRRAGDMKMATLATYFGLGN-QTHRSLDD 172 Query: 181 VYATLALVWLI 191 V ++ Sbjct: 173 VRMNFEVLKYC 183 >gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407] gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520] Length = 220 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLGSMSPELRLTLKH 215 >gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 218 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 30/217 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +P+++ G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF-- 114 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D + + + + + + P A Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGK-------------------QA 181 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 H A D T L + + L + +++ + Sbjct: 182 HSALYDTEKTTELFCAMVNRLKGLGGFPLVSDSESNV 218 >gi|330829910|ref|YP_004392862.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565] gi|328805046|gb|AEB50245.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565] Length = 208 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 20/170 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET D VR+ Q ++ + E K ++V I G+ Sbjct: 32 VALDFETTSLDPEQAEIVSIGAVRI--QGNRLLTGEALAIKVQPPASLTGQSVVIHGLRH 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q G+ R + F ++GY+ N W Sbjct: 90 QDLQ-QGMTLEAALRLLLHFI--GPRELVGYHVAYDLRIL-------NLACQKLWELTLP 139 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 ++ + D A L + + + AH Sbjct: 140 QRGIEVSQLYHDHLYRRY--------PDAAIDLHLSAICSHLELPSLPAH 181 >gi|28199095|ref|NP_779409.1| ribonuclease T [Xylella fastidiosa Temecula1] gi|32129969|sp|Q87C86|RNT_XYLFT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28057193|gb|AAO29058.1| ribonuclease T [Xylella fastidiosa Temecula1] Length = 211 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G + + A + + D PA Sbjct: 14 MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 73 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106 DP+++ +TGI A + + + I+ +N FD + Sbjct: 74 IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 133 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R Y + + L + + A Sbjct: 134 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 176 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 177 LDWNAADAHSAVYDAEKTAHLFCTITN 203 >gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297] gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297] Length = 215 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV---RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V D W + + F +P + + A+ TG Sbjct: 11 VVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFTG 70 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + + I + I+ +N FD + R Sbjct: 71 IDPHNPLRGAVDEGDALKEIFKMIRKGMKAAGCKRAILVGHNANFDHNFLFAAAERANNK 130 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + D + L+ A+G+E A Sbjct: 131 ------RNPFHPFTTFDTAALSALVYGQTV-------------LKRACQASGVEFSDKEA 171 Query: 175 HDAKADVYATLALVWLIREK 194 H+A+ D T L + + Sbjct: 172 HNAEYDTRKTAELFCNMINQ 191 >gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1] gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1] gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1] gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1] gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1] Length = 220 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSQL---VRPDRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 177 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + A V + ++ + I G+ Sbjct: 2 NFVAMDFET--ANREKHSAVSIALAIVRDN-QVVDKFYSL---IKPETTFSSYNTAIHGL 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q E + I FF+ ++ +N FD+ + D Sbjct: 56 HRQDVADAPK-FPEVWQTISPFFTENK--LVVAHNASFDNSILKGTLQYYDIDE------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD ++ P+ KL +A GI + H+A D A Sbjct: 107 ---PHYLLLDTVQTSRKLFPNFEN----------HKLNTVAGNLGITLDHHHNALDDAVA 153 Query: 184 TLALVWLIREK 194 ++ Sbjct: 154 AANILIYESNH 164 >gi|254489693|ref|ZP_05102889.1| exonuclease superfamily [Methylophaga thiooxidans DMS010] gi|224465102|gb|EEF81355.1| exonuclease superfamily [Methylophaga thiooxydans DMS010] Length = 185 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVF 59 N+ + D E G D D + A + D + + +F D L + Sbjct: 5 KNNLIWIDLEMTGLDTNNDYIIEIATIVTDAKLNVLAEGPIFAIHQQDAILDSMDEWNTR 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V EAE ++ +F + N+I D + Sbjct: 65 QHGKSGLTQRVKDSTVTEAEAEQKTIEFLRKYVPAGVSPMCGNSICQDRRFLARCMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AFFHYR 130 >gi|127513296|ref|YP_001094493.1| exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] gi|126638591|gb|ABO24234.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 226 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 47/180 (26%), Gaps = 20/180 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D E G + + D+ V + + + + + ++ I GI Sbjct: 43 LLAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSV---GQSATIHGIL 99 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + F SV ++ ++ D + ++ Sbjct: 100 DTHLDAALTPEQAMAW----FLSVSEGMVLVAHHAPLDLAFLQSGLQACL---------G 146 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +D + + +L G+ AH+A D A Sbjct: 147 EKPRLLAIDTL----LLEKQRLLRQQEHLQEGCLRLGRSRARYGLPVYAAHNALIDALAC 202 >gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] Length = 1411 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 28/199 (14%) Query: 5 FVIYDYETFGRDVALD------------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 ++I+D ET G + D R + + V +D + + I + + KP + Sbjct: 2 YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLI-ELKDYIIKPEGYEI 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P + I GI+ + A+ G+ + N + +N+ FD F R Sbjct: 61 PF-NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSN--FLIGHNVFFDIKIVCAEFIR 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + +++ ++ + +WP+ L +L + Sbjct: 118 INKKISFFKKKIIDTKEISIN---YCAIKMGEKFKWPT---------LTELYKKLFNDTF 165 Query: 173 NAHDAKADVYATLALVWLI 191 AHD+K+DV AT + + Sbjct: 166 IAHDSKSDVLATTKCFFEL 184 >gi|307243536|ref|ZP_07525684.1| exonuclease [Peptostreptococcus stomatis DSM 17678] gi|306493092|gb|EFM65097.1| exonuclease [Peptostreptococcus stomatis DSM 17678] Length = 460 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 55/274 (20%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-------- 52 + +V D E G + L+ + A ++V R I+ P + L Sbjct: 15 LPETYVAIDLELTG-NYCLNYIIELAALKV-RDGVIIDEFSSLVRPPDYNVLEKRKGSKS 72 Query: 53 --------------------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92 D +TGI+ + E ++ H F Sbjct: 73 GYKAKKIKSTVNVDGQEIYYIDEFIEDLTGISNEMIYSA-EDETHVIKKFHDFI---GDL 128 Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152 + + + D ++ F R + D D+ Y Sbjct: 129 PVIGHGMGNDIREIKDSFDRILDKDFEN------PCIDTFDLGEFAYG------------ 170 Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 F L L GI++ + H A++D Y T + + + Y + Sbjct: 171 ---EKFSLIRLCDHLGIDNSDVHRARSDAYRTHLSYLNLLDDLDSKYGETYSQEFFQWMD 227 Query: 213 KLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 + + QN V A + A + H Sbjct: 228 RALMKQNRILKNRVMRSINAKNWSLKRQAYLEDH 261 >gi|148652365|ref|YP_001279458.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PRwf-1] gi|148571449|gb|ABQ93508.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp. PRwf-1] Length = 201 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 19/183 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D E G + + A + + I++ + +P + + I G+ P Sbjct: 34 VAIDCEMSGLNAKKNHLLSIAAIHI--NGSVIDTGQGLHLICRPPVMPTKDTIIIHGLRP 91 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G+ + ++ F N I+G+ +F + ++ Sbjct: 92 IDVEN-GLSYEQMLAKLLPFI--GNRPIVGF----------CPQLDISFLNPLVKAYMGT 138 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++D+ ++ S L + + + AHDA D T Sbjct: 139 YLPNPVIDI----RTLYNRYSGNRTQGIPHQSSHLSAICQQLKLPDMAAHDAYNDAIMTA 194 Query: 186 ALV 188 Sbjct: 195 MAF 197 >gi|93005267|ref|YP_579704.1| DNA polymerase III subunit epsilon [Psychrobacter cryohalolentis K5] gi|92392945|gb|ABE74220.1| Exonuclease [Psychrobacter cryohalolentis K5] Length = 203 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 19/187 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D E G + A + ++ + C+P +P+ + + I G+ Sbjct: 36 VAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPP--VMPEGDTIVIHGLRT 93 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + F S N ++G+ F + + Sbjct: 94 ADVEHA-MSYDEMLGLLLPFIS--NRPLVGF----------CPQIDVGFLNPLVKHYMGT 140 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + +++D+ + S+ + + L + I + HDA D T Sbjct: 141 HLPNEIIDI----RPLYSRRMMGRSQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTA 196 Query: 186 ALVWLIR 192 +R Sbjct: 197 MAFLHMR 203 >gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] Length = 219 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 67/265 (25%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V + + +P D P+A+ I IT + Sbjct: 4 VIDTETCGL---QGGIVEIASVDI-VDGRIT-NPMSHLVRP--DRPITPQAMAIHRITEE 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E + +N FD W Sbjct: 57 MVADKPWIE-EIIPH------YLGSPWYVAHNASFDRRV---------LPEMSGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVATP----PGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 L+ I + + D + L F + +A +A + Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190 Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + L Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTLKH 215 >gi|162147891|ref|YP_001602352.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209542508|ref|YP_002274737.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] gi|161786468|emb|CAP56050.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209530185|gb|ACI50122.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] Length = 269 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 54/194 (27%), Gaps = 33/194 (17%) Query: 5 FV-IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-----ADDYLPDPEAV 58 FV + D ET GR+ A + V R + T P P+ + Sbjct: 15 FVRVIDLETSGRNAADGGIVEIGWQDVARDA---DGTWALAGPPGARLTHPGGPITPQTM 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I IT AE + I + + F+ Sbjct: 72 AIHHITDAHVRDAP-PFAEIAPDILH--PADRPAAMAAHRASFEQ--------------- 113 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH---VNAH 175 W G+ L + I + WP + G ++ L+ G+E H Sbjct: 114 --GWIRGSLPPALTTGLHWICTYKCALRLWP-DEPGHSNQGLRHSRRPAGLERALGDPPH 170 Query: 176 DAKADVYATLALVW 189 A D Y T + Sbjct: 171 RAGPDAYVTAHHLR 184 >gi|24374384|ref|NP_718427.1| exonuclease [Shewanella oneidensis MR-1] gi|24348949|gb|AAN55871.1|AE015724_4 exonuclease [Shewanella oneidensis MR-1] Length = 181 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 41/172 (23%), Gaps = 20/172 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D E G D D+ V ++ + + + ++ I GI Sbjct: 2 DLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQQKLVQIRGSV---GQSAIIHGILDNHL 58 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + V E F ++ ++ D + + + Sbjct: 59 TQA-VSIEEAMAW---FMEQTRGRVLVAHHSPLDCRFLQQDILT------IYHQAVLLPA 108 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + S +L G+ AH A D Sbjct: 109 IDTL-------VLEKQRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTD 153 >gi|237702502|ref|ZP_04532983.1| yacC [Escherichia sp. 3_2_53FAA] gi|226903283|gb|EEH89542.1| yacC [Escherichia sp. 3_2_53FAA] Length = 282 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A AD Sbjct: 210 LTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|170755896|ref|YP_001781901.1| exonuclease family protein [Clostridium botulinum B1 str. Okra] gi|169121108|gb|ACA44944.1| exonuclease family protein [Clostridium botulinum B1 str. Okra] Length = 253 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 30/207 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q V+++ I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAVKLNENLTTIDTFNAL-VKPEIYSNLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + + + ++Y Sbjct: 58 PFIKNLTNLTMDSLNKA-KPFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYELD 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S + N + A++ + +P + S ++ L + ++ + Sbjct: 117 TESIPKEYIN-------------VQAYTGKYLNFPKSINVGLSNAVE---LFHITKNNDF 160 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H+A D + T + I +K K Y Sbjct: 161 HNAFNDAFYTAKIFKKIYSEKIKTKIY 187 >gi|153003684|ref|YP_001378009.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152027257|gb|ABS25025.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 12/191 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G D D V + ++ + +P P+++ + Sbjct: 12 TYWALDLETGGLDPKSDPILAVGMVPIRGGAIRLAESYASLVRPDVREGIRPDSMRAHHL 71 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ +E +I ++ +N + R Sbjct: 72 VPRDVAEAPPLET-VLDQIDARIRE--GALLVHNAALDVSFLRRAYRRAGRRWP------ 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 G D + ++ + P L + +HDA D A Sbjct: 123 -GPPVVDTVVLLLKAAKRARFVD--PDATGIEPELNLAAARRRAKLPEYASHDALTDAIA 179 Query: 184 TLALVWLIREK 194 L ++R + Sbjct: 180 AAELFLVLRRR 190 >gi|332882889|ref|ZP_08450497.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679166|gb|EGJ52155.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 182 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 27/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R E +P +Y + + Sbjct: 19 MKDFAAIDFET--ANGQRSSICSVGLVVV-RDGEITIRHY-RLVRPYPNY-YNYWNTQVH 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ Q E R I + +N FD+ + F + Sbjct: 74 GMSFQDTAHA-APFPEVWREIIPLIE---GLPLVAHNRPFDEGCLKAAFQAYGME----- 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +RA + +LQ +AL G + H A D Sbjct: 125 ----YPGYPFHCTLRASRLAF---------GRDLPNHQLQTVALRCGYDLTQHHHALTDA 171 Query: 182 YATLALVWLI 191 A + I Sbjct: 172 EACARIALKI 181 >gi|167957555|ref|ZP_02544629.1| oligoribonuclease [candidate division TM7 single-cell isolate TM7c] Length = 182 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 17/129 (13%) Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL------- 52 M+ + D E G D D+ + A + D + ++ E K D + Sbjct: 1 MSKAKILWVDLEMTGLDPTKDKILEVAAIATDWDFNEVGRFES-AVKVDDSLISARFKAG 59 Query: 53 -------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 PD I + K VE + + ++F+ ++ N+I D + Sbjct: 60 HNFWDANPDARDGLILQNSQAKLTSK-QVEEDILKFTKEYFTHDEPILLAGNSIHQDRKF 118 Query: 106 SRNIFYRNF 114 + Sbjct: 119 IDREWPNLG 127 >gi|59713532|ref|YP_206307.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] gi|59481780|gb|AAW87419.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 259 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 58/199 (29%), Gaps = 31/199 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-------- 56 F + D+ET G + D V + I+ + + E Sbjct: 66 FTVVDFETSGLNPKTDHIVSVGWVHIIDG--VIKLSSAQHHIINEPTSISAEDGHEEREH 123 Query: 57 -AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 A + I P++ + G+ E FFS + I+ + + + Sbjct: 124 IARSLHHILPEQ-QKMGISLEEAME---CFFSNLPSNILVVHGATIEQRFLEQFILSLQL 179 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + W LD +R ++ F+L L + AH Sbjct: 180 PNLPIIW---------LDTLRIEQ-------NTIQQNRYQRDFRLFSLRRQYKLPDYPAH 223 Query: 176 DAKADVYATLALVWLIREK 194 A D +T L +++ Sbjct: 224 HALVDAISTAELFLAQKKR 242 >gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 216 Score = 60.6 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 45/220 (20%), Gaps = 39/220 (17%) Query: 5 FVIYDYETFGRD-VALDRP-------------AQFAGV--RVDRQWEKIESTEVFFCKPA 48 + D ET G + V K + + Sbjct: 14 LIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGE--SWHRRIQ 71 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 ++ + GITP + + F ++ ++ + + Sbjct: 72 PGGPIAKASIAVHGITPAELKDAPQ-FRDVLDEFETFI---GQDMLLAHSAENEIEFLNF 127 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN- 167 + R R DV+ + F G L L Sbjct: 128 EYARVG-------------RCGFDDVIFSDNDFVCTQELSRQFFPGVPG-SLDVLCDRLW 173 Query: 168 --GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 + H A D T + + + Sbjct: 174 IDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSF 213 >gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 218 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 30/217 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +P+++ G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF-- 114 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D + + + + + + P A Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGK-------------------QA 181 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 H A D T L + + L + +++ + Sbjct: 182 HSALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218 >gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 218 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 30/217 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +P+++ G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF-- 114 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D + + + + + + P A Sbjct: 141 RDPFHPFAMFDTATLTGFMYGQTVLVKACQMAKIPFDGK-------------------QA 181 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 H A D T L + + L + +++ + Sbjct: 182 HSALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218 >gi|229512381|ref|ZP_04401856.1| oligoribonuclease [Vibrio cholerae TMA 21] gi|229526905|ref|ZP_04416308.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426] gi|229526997|ref|ZP_04416393.1| oligoribonuclease [Vibrio cholerae 12129(1)] gi|262172561|ref|ZP_06040239.1| oligoribonuclease [Vibrio mimicus MB-451] gi|229335520|gb|EEO01001.1| oligoribonuclease [Vibrio cholerae 12129(1)] gi|229336074|gb|EEO01093.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426] gi|229350596|gb|EEO15541.1| oligoribonuclease [Vibrio cholerae TMA 21] gi|261893637|gb|EEY39623.1| oligoribonuclease [Vibrio mimicus MB-451] Length = 181 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + V E E + F I N+I D + Sbjct: 66 HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|119474667|ref|ZP_01615020.1| putative exonuclease [marine gamma proteobacterium HTCC2143] gi|119450870|gb|EAW32103.1| putative exonuclease [marine gamma proteobacterium HTCC2143] Length = 255 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 51/193 (26%), Gaps = 27/193 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET G + + + D + + + A + GI Sbjct: 43 VILDTETTGLS-ETAQLIEICIL--DFEGNIL-----LNERVKPSVKVSKGAREVHGIKA 94 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + R + + I+ YN ++ N Sbjct: 95 RDLKSC-RSWPDVYRDYVEVTA--GKNIVAYNAKFDRRIITQTCRAFNL--------TMK 143 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 +W L + + R KL A + +AH A D T Sbjct: 144 KRKWYCLMLAFSELVGRT-------RYGDYKWHKLSTAAWVFDVPPNDDAHSAYGDCETT 196 Query: 185 LALVWLIREKKPK 197 LA+ + P+ Sbjct: 197 LAVAKEFLQFDPE 209 >gi|94984265|ref|YP_603629.1| exonuclease, RNase T and DNA polymerase III [Deinococcus geothermalis DSM 11300] gi|94554546|gb|ABF44460.1| exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T [Deinococcus geothermalis DSM 11300] Length = 188 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 57/185 (30%), Gaps = 18/185 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +T + D ET GRD A V + Q E + + Y + EA+ + Sbjct: 10 LTQPIIFVDTETGGRDPARHPLLTVGLVTLTPQGEVT-RPLHLRVR-HEHYEVEEEAMAV 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI E + + + ++G +N+ +D + R + Sbjct: 68 NGIDLATHHATAQAPEEVAEAVRAYARAVGRVMLGGHNLAYDLGFLRW-----LLPDLKS 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + G L P + P L LA G+ + AHDA D Sbjct: 123 IFRRGRVDTKLTAQFLLHAGILPRKVGTP----------LDQLAKYFGLAY-QAHDALED 171 Query: 181 VYATL 185 T Sbjct: 172 ARVTA 176 >gi|254506426|ref|ZP_05118568.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16] gi|219550600|gb|EED27583.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16] Length = 210 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 20/193 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D +V I + Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSRP--FEVRLRAPQSLDSSSVKIHQMR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E + ++ +F N ++GY+ + + Sbjct: 88 HQDLVD-GLDEKQALIKLLEFV--GNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L+ + L + + + HDA D + Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLDLPIQDKHDALQDAISA 189 Query: 185 LALVWLIREKKPK 197 + + + Sbjct: 190 ALVFVRLTKGDLP 202 >gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1] Length = 176 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 30/192 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++++D ET + A DR + V + + + + D +T Sbjct: 1 MAVYIVFDVET--PNHANDRMSAIGITAVKDN-KIVANYFSL---VDPETHFDSFNTQLT 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI +K AE ++I S I+ +N FD R+ SY + Sbjct: 55 GIDAEKVKDAP-NFAELWKKIEPIMSKG---ILVAHNAVFDMSVL-----RSCLRSYGIT 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + + R R L + GI + H A +D Sbjct: 106 WKPTAEYLCTVQIGR--------------RVLPNMKHNLNVMCDHYGIALDH-HQADSDA 150 Query: 182 YATLALVWLIRE 193 +A ++ E Sbjct: 151 HACAEILLRYME 162 >gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] Length = 223 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + F +P + + A+ TG Sbjct: 18 VVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEKAALEFTG 77 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + S N II +N FD + R Sbjct: 78 IDPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAAAERAGLK 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + + ++ AH Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------SARIPFDNKEAHS 180 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 181 ALYDTERTTELFCHIVNR 198 >gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Pediococcus pentosaceus ATCC 25745] gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Pediococcus pentosaceus ATCC 25745] Length = 178 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET A V + + + + + V + GI Sbjct: 2 NFIAMDFET--AAPTRASACSIALTVV-QNDVITDE---LYSLINPETEFNWRNVQVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 E + QFF+ ++ +N FD+ + R + Sbjct: 56 HQADVSDAP-TFPELWPVVKQFFT--PDKLVVAHNATFDNSVLKKTLER---------YQ 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD +R +F PD KL + GI+ + H+A D A Sbjct: 104 INRLPYQTLDTLRTSKSFYPDYTN----------HKLNTICDNLGIDLQHHHNALDDSRA 153 Query: 184 TLALVWLIREK 194 ++ + Sbjct: 154 CANILLHQEHQ 164 >gi|227541474|ref|ZP_03971523.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227182756|gb|EEI63728.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 427 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 53/192 (27%), Gaps = 27/192 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + Q A V+V + ++ P E ++ Sbjct: 251 KPKFVAVDFET--ANRSSRSACQIAMVKV-EYGQIVDRFSTLLKPPPGHDEF--EFTYLH 305 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + I F + +N FD + DSY + Sbjct: 306 GISARDVADAP-SWKFVEPYIRAFVDR---LPVYAHNASFDRGVWVS------MDSYYGT 355 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + + A F+L H A +D Sbjct: 356 RTLPEEFYCSYRTAKRLIPGLENYKLPTVTKAIAPWFRLDH------------HRADSDA 403 Query: 182 YATLALVWLIRE 193 A +V ++ Sbjct: 404 EACALIVIGLQM 415 >gi|114047088|ref|YP_737638.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] gi|113888530|gb|ABI42581.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] Length = 228 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 43/176 (24%), Gaps = 20/176 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D E G D D+ V ++ + S + + ++ I GI Sbjct: 46 DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQGSV---GQSATIHGILDNHL 102 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 V E F S I+ ++ D + + + Sbjct: 103 TEA-VSIEEAMAW---FVSQTRGHILVAHHSPLDCRFLQQDILS------IYHQVVVIPA 152 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + S +L G+ AH A D A Sbjct: 153 IDTL-------LLEKHRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTDALAC 201 >gi|258624475|ref|ZP_05719421.1| oligoribonuclease [Vibrio mimicus VM603] gi|258583224|gb|EEW08027.1| oligoribonuclease [Vibrio mimicus VM603] Length = 181 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + V E E + F I N+I D + Sbjct: 66 HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYRHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 232 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FSFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|170744636|ref|YP_001773291.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168198910|gb|ACA20857.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 296 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 32/124 (25%), Gaps = 7/124 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63 ++ D ET G D A D + V Q +I F + P PEA +TGI Sbjct: 42 LVLDTETTGLDPACDEVIELGIVAFTYGQSGRIYRVRHRFNQLHQPGKPIPEAVTRLTGI 101 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + +I +N + + Sbjct: 102 TDADVAGK-----RIDDAAVAALAAKARVVIAHNARFDRRMCEVRWPFFAELNWACSCHQ 156 Query: 124 NGNS 127 Sbjct: 157 IDWR 160 >gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135] gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135] gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144] gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045] gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028] Length = 184 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 34/211 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N FV D+ET + V+V + ES + + Sbjct: 3 QNAFVALDFET--ANSKRTSICSVGMVKVIDN-QITESFHTL---VNPFDYFTETNITVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + +F + +N FD + D+ + Sbjct: 57 GIHPEDVQDAPG-FKHVYPYMLKFIDQ---LPVVAHNAAFDMNVLHQSLKSHNIDTPSLT 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD- 180 + Q R A + L+ L ++ HDA D Sbjct: 113 Y--------------------FCSYQLAKRTINAYRYGLKHLMNHYHLDFHGHHDALNDA 152 Query: 181 ---VYATLALVWLIREKKPKLFEYLYDYRNK 208 T L+ + + L Y + ++K Sbjct: 153 KACAMITYRLLKHYDDLQSMLSIYGKNLKDK 183 >gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20] gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW] gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20] gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW] Length = 229 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F KP + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M A + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|237749183|ref|ZP_04579663.1| oligoribonuclease [Oxalobacter formigenes OXCC13] gi|229380545|gb|EEO30636.1| oligoribonuclease [Oxalobacter formigenes OXCC13] Length = 206 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + + D E G D DR + A V D + V+ +D L +A Sbjct: 32 NLIWVDLEMTGLDPETDRIIEVAVVVTDANLNVLAEGPVYAIHQSDAVLNGMDAWNKGTH 91 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + + EA + F + N I D + R Sbjct: 92 GRSGLIDRVKASNITEAMAEDALIDFLIDYVPRGKSPMCGNTICQDRRFMAKTMPRLEAF 151 Query: 117 SYRW 120 + Sbjct: 152 FHYR 155 >gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60] gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60] Length = 242 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 68/218 (31%), Gaps = 31/218 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + D +P + + A+ TG Sbjct: 20 VVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPFEGANLEARALQFTG 79 Query: 63 ITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P +R + E E RRI ++ CI+ +N FD + + R Sbjct: 80 INPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNAHFDLSFLNALIERTN 139 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 + ++ +LD + + L G+E Sbjct: 140 -----SKNQSQFHQFSVLDTVTLSALAFGQTV-------------LARACKLAGLEFDGN 181 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 AH A D T L I P L L K++ Sbjct: 182 EAHSALYDTQKTAELFCYILNNYPMLTPNLASDEAKDE 219 >gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20] gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 218 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 26/215 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +P+++ G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKR---- 136 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + F + AH Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPF-----------DGKQAHS 183 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 A D T L + + L + +++ + Sbjct: 184 ALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218 >gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046] gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197] gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110] gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536] gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073] gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11] gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11] gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1] gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88] gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a] gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989] gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39] gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026] gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952] gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9] gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B] gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354] gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185] gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088] gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1] gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7] gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1] gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1] gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1] gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1] gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1] gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1] gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1] gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1] gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1] gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1] gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1] gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736] gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617] gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7] gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70] gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9] gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli] gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110] gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536] gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11] gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli] gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli] gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11] gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989] gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1] gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88] gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39] gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a] gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026] gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82] gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952] gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1] gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15] gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042] gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088] gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185] gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354] gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034] gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1] gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1] gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1] gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1] gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1] gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1] gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1] gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1] gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1] gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1] gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7] gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1] gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1] gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972] gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146] gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7] gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617] gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70] gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C] gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W] gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1] gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3] gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1] gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327] gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B] gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101] gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89] gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687] gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905] gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61] gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14] gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010] gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G] gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180] gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357] gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11] gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482] gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120] gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252] gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263] gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863] gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007] gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509] gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2] gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1] gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3] gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167] gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v] gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9] gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88] Length = 220 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1] Length = 179 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 30/190 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++++D ET + A + + + V +S + D + +T Sbjct: 1 MTRYIVFDVET--PNFANNHMSAIG-ITVVEDGRIADSFFSL---VDPETHFDHFNIRLT 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+K A+ ++I + I+ +N FD + +Y Sbjct: 55 GIDPKKVQGAP-NFAQLWQKIEPIMNSG---ILVAHNAVFDMSVLKK-----CLSAYGIE 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + + R + KL ++ GI + H A +D Sbjct: 106 WKSTAKYLCTVQAGRKLLPGRG--------------HKLNEMCDYYGISLDH-HQADSDS 150 Query: 182 YATLALVWLI 191 A ++ Sbjct: 151 RACAEILLRY 160 >gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella chromatophora] gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella chromatophora] Length = 302 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 43/200 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAV 58 + +I D ET + + + S F C+ + Sbjct: 74 LPEKLLILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPCENNP-------SY 126 Query: 59 FITGITPQKAL-----RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + GI+ + G+ V ++ +I +N FD + Sbjct: 127 SLNGISAETTRLIYPWEAGLSYF--------LTLVESSDLIVAHNASFDRQWFG------ 172 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D L ++ + S I WP + ++ ++DLALA G+ + Sbjct: 173 ---------------IDPLPIINKPWLCSMQDINWPVQRSLRSNPSIRDLALAYGVPVWS 217 Query: 174 AHDAKADVYATLALVWLIRE 193 H A D + E Sbjct: 218 THRALTDCLYMSQVFERCPE 237 >gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 186 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 30/194 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + D + + E +P D P + + Sbjct: 1 MRTLAI-DFET--ANERRDSACAVGLAWI-EDGRVVRR-EARLIRP-PDLRFSPFNIRVH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E F ++ +N FD Sbjct: 55 GIRPEDVADA-KPFGEAMA---PFLPEIAGALVLAHNASFDVGVLCAALAACGLP----- 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R+ L ++ QWP ++L LA GI HDA D Sbjct: 106 ----RPRFTSLCTVQLAR------RQWPGEA----RYRLPILAERLGIPL-RHHDAGEDA 150 Query: 182 YATLALVWLIREKK 195 +A + + Sbjct: 151 FACAQIALAAMREA 164 >gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP] gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP] Length = 229 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F KP + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M A + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|194228403|ref|XP_001492131.2| PREDICTED: similar to Three prime repair exonuclease 2 (3-5 exonuclease TREX2) [Equus caballus] Length = 269 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 26/205 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA------------DD 50 FV D E G A+ + V R + + F + Sbjct: 41 ETFVFLDLEATGLPSVDPEIAEISLFAVHRSSLENPERDEFGIPVLPRVLDKLTLCMSPE 100 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDDYYS 106 +A ITG++ + R G + R + F S C++ +N +D Sbjct: 101 RPFTAKASEITGLSSEGLARCGKAGFDSAVVRMLQAFLSRQESPICLVAHNGFDYDFPLL 160 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-AL 165 R R + D L +R + G + + L L Sbjct: 161 CTELRRLGARLPRDT-----VCLDTLPALRGLDHAHSHGTR----AQSCKGYSLGSLFRR 211 Query: 166 ANGIEHVNAHDAKADVYATLALVWL 190 E AH A+ DV+ L + Sbjct: 212 YFQEEPKAAHSAEGDVHTLLMVFLH 236 >gi|270208409|ref|YP_003329183.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Klebsiella pneumoniae] gi|283826841|ref|YP_003377712.1| conserved hypothetical plasmid protein [Shigella sonnei] gi|218546445|gb|ACK98834.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Klebsiella pneumoniae] gi|283466733|emb|CBI12389.1| conserved hypothetical plasmid protein [Shigella sonnei] gi|301333093|gb|ADK71040.1| hypothetical protein pHK01_007 [Escherichia coli] Length = 282 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDMARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A D Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGLAHSAIVDARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693] gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693] Length = 191 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 N + D ET G + Q +R+D+ + +E F+ KP + + +A+ + Sbjct: 1 MNKIIFIDTETGGVNPEKATLIQLSGIIRIDK--KDVEKFN-FYIKPFKNSEVNEKALEV 57 Query: 61 TGITPQKAL-RDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYR 112 G T ++ V E E ++ + I+ N+RFD + F R Sbjct: 58 QGRTLEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYNVRFDVDILKAFFQR 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + N + LD +S +Q + KL+ GIE Sbjct: 118 HG----------NNFLFSYLDSSMLDPLYSIRLLQIAEILPVLENNKLETWCKHFGIEL- 166 Query: 173 NAHDAKADVYATLAL 187 AHD+ ++ AT L Sbjct: 167 KAHDSLENIEATKKL 181 >gi|88859048|ref|ZP_01133689.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas tunicata D2] gi|88819274|gb|EAR29088.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas tunicata D2] Length = 210 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 20/202 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ D E G D +D A + ++ Q + +E F ++ P GI Sbjct: 27 KYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSP---IFHGI 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + A++ GV + + ++ ++N D + + F Sbjct: 84 -DRFAVKGGVPLRQALLELQPLLDDH---VLVFHNAELDWAFLKAAFQNANL-------- 131 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 S +LD M+ Y + + DD L + H+A D A Sbjct: 132 -LLSSSVMLDTMKIEYKRLMNQGHEIASDDLN----LARCRSRYQLPEYLTHNALTDALA 186 Query: 184 TLALVWLIREKKPKLFEYLYDY 205 T L + + Sbjct: 187 TAELFLAQLNQIAGAKGLTLKH 208 >gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] Length = 183 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 52/186 (27%), Gaps = 30/186 (16%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +F+ D+ET G+ ++ AG+ V + + +E+ +D + I G Sbjct: 5 NFIAIDFETATGKRASVCE----AGICVVKDGKIVETKSWLIR--PEDNAYSYWNIQIHG 58 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P+ + I + T I+ +N FD R D+ Sbjct: 59 IHPEDTENAP-SFPCVWQEILTYLKE--TPILVAHNAAFDISCIRKSLELYHLDTL---- 111 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D +RA L L I H A D Sbjct: 112 -----DVDYYCTLRAARHHYDFECHT-----------LGYLCEQFEIPEGTHHRAGDDAE 155 Query: 183 ATLALV 188 L Sbjct: 156 MCARLF 161 >gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana] Length = 500 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + + +F + V ++ ++++ V +PA+ L P +V Sbjct: 13 IAFFDVETT-IPFRVGQGYAILEFGSILVCPKKLVELKNYSVL-VRPANLNLITPRSVKC 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + A+ + ++ G+N ++FD R F D Sbjct: 71 NGIKREDVESA-LTFADIADTVYDIL--HGRIWAGHNILKFDCPRIREAFAEIGRDPPE- 126 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ + H + D Sbjct: 127 ----PKGTIDSLALL------------TQRFGRRAGDMKMATLATYFGLGN-QTHRSLDD 169 Query: 181 VYATLALVWLI 191 V ++ Sbjct: 170 VRMNFEVLKYC 180 >gi|314976530|gb|EFT20625.1| exonuclease [Propionibacterium acnes HL045PA1] Length = 169 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 15/161 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET D R + + + D + + EA + I+P Sbjct: 17 VILDTETTDLD---GRIIEISII--DAA---TGTVLMNQLINPQGAPIYAEARTVHHISP 68 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + R+ + ++ N FD + D+ W W Sbjct: 69 DDLATAP-TFTQVRPRLEDVVADR---VVMAWNAPFDQGRIEAEYGLAGLDAPAWPW--- 121 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 L M DG D A +L L Sbjct: 122 CCLMRLEAAMMGCRWRRLDGPHRGLGDVIAARQRLIALQQM 162 >gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073] Length = 238 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 22 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 74 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 75 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 114 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 115 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 162 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 163 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 208 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 209 DPGYLRWLFNNLDSMSPELRLTLKH 233 >gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi] gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|167837413|ref|ZP_02464296.1| oligoribonuclease [Burkholderia thailandensis MSMB43] Length = 201 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 19/130 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55 + V D E G DR + A V + + I ++ K D Sbjct: 19 NLVWLDMEMTGLSPDTDRIIEIAVVVTNSTLDIALEGPVLAIHQSDETLAKMDDWNK--- 75 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 G + + V EA+ + +I F P + N+I D + Sbjct: 76 ---NTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132 Query: 111 YRNFYDSYRW 120 + Sbjct: 133 PELERFFHYR 142 >gi|319946618|ref|ZP_08020852.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC 700641] gi|319746666|gb|EFV98925.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC 700641] Length = 819 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 39/209 (18%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFA-----GVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 + + D E A G+ + + + +E+ E D Sbjct: 6 KRKYAVVDLEATSASSN-------AKIIQIGIVIIQDGQIVETYET---DVNPHEELDEH 55 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT Q+ + ++ +R++++ + +N++FD + ++ Sbjct: 56 IRQLTGITNQQLKKAP-DFSQVARQVYELIED---AVFVAHNVKFDANLLAESLFWEGFE 111 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R D +++ + + + L L I +AH Sbjct: 112 LIT-------PRIDTVELAQVFFPTLE-------------RYNLSSLCEELAIPLDHAHS 151 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDY 205 A +D AT L +RE L L + Sbjct: 152 AISDAQATAQLFLKLRETIASLPRELVET 180 >gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30] gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10] gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20] gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30] gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10] gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20] Length = 180 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + A V V + + + + + + I GI Sbjct: 5 NFIAMDFET--ANYQKHSACSLALVMV-QDSKIVGEYYTL---IQPETEFFWKNIQIHGI 58 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + ++I Q+ N+ I+ +N + D Y S Sbjct: 59 RPEDVQEAPK-FPDVWKQIQQY-YQLNSLIVAHNAGFDTGVLAGC------LDYYGLSQP 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L +R P+ KL + I +N HDA D A Sbjct: 111 N----YLSLCTVRTSRKLYPEFTN----------HKLNTVCEQLQIPLLNHHDALEDSRA 156 Query: 184 TLALVWLIREK 194 ++ E+ Sbjct: 157 CAQILLRQEEE 167 >gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1] gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1] Length = 229 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M LA + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAELFCYMVNH 203 >gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH] gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH] Length = 229 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M LA + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145] gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145] Length = 222 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 62/205 (30%), Gaps = 37/205 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51 M F V+ D ET G + + D + A V ++ + +ES + F +P + Sbjct: 21 MKQRFRGYLPVVIDVETAGFNASTDALLEIAAVILNFDEHGQLKPVESHQ-FHVEPFEGA 79 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105 + A+ GI P LR + E E + + + ++ +N FD + Sbjct: 80 NIEQAAIEFNGIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSF 139 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 R N + D + L Sbjct: 140 LMRAAERANIK------RNPFHPFVSFDTTSLAALTLGQTV-------------LIKACK 180 Query: 166 ANGIEHV--NAHDAKADVYATLALV 188 A GIE AH A D T L Sbjct: 181 AAGIEFDQKQAHSALYDTEKTAELF 205 >gi|251783306|ref|YP_002997611.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391938|dbj|BAH82397.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 199 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 9 DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 62 TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 117 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 158 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 159 ARMTAAIYESFLETDTN 175 >gi|259419276|ref|ZP_05743193.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B] gi|259345498|gb|EEW57352.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B] Length = 240 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 24/193 (12%) Query: 7 IYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + DYET G + + +F RVD + + F P + + IT Sbjct: 11 VIDYETTGTQEDENAQVIEFG--RVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHITD 68 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + + +N +F+ + F+D W Sbjct: 69 TDVADAPPP-GQVWQPFWD--GCRSEDYVAAHNAKFE---------QYFHDGNGRKWICT 116 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L+ A + W D+ SF H A D Y T Sbjct: 117 YKSA-LVVWPDAPSHGNQALRYWLGIDNIHPSFD--------RDAAQPPHRALPDAYVTA 167 Query: 186 ALVWLIREKKPKL 198 ++ + + K Sbjct: 168 HILLELLKHKTPE 180 >gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] Length = 184 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 57/213 (26%), Gaps = 35/213 (16%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + FV D+ET + V+V + ES + Sbjct: 1 MAQNAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFHTL---VNPFDYFTETNIN 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P+ + QF + +N FD D+ Sbjct: 55 VHGIHPEDVQDAPG-FKHVYPYMLQFIDQ---LPVVAHNAAFDMNVLHQSLKSLNIDTPS 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ Q R A + L+ L ++ HDA Sbjct: 111 LTY--------------------FCSYQLAKRTINAYRYGLKHLMNHYHLDFHGHHDALN 150 Query: 180 D----VYATLALVWLIREKKPKLFEYLYDYRNK 208 D T L+ + + L Y + ++K Sbjct: 151 DAKACAMITYRLLKHYDDLQSMLSIYGKNLKDK 183 >gi|194290291|ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424] gi|193224126|emb|CAQ70135.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424] Length = 211 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 12/140 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G DR + A V D + + V +D L D Sbjct: 14 NNLIWLDMEMTGLQPDTDRIIEVAVVITDSELNILAEGPVLVIHQSDAVLDGMDNWNKGT 73 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN-----IF 110 G + K + E + + F + N+I D + Sbjct: 74 HGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPAGKSPMCGNSICQDRRFMARYMPKLEA 133 Query: 111 YRNFYDSYRWSWDNGNSRWD 130 + ++ + + RW+ Sbjct: 134 FFHYRNLDVSTLKELCKRWE 153 >gi|104784044|ref|YP_610542.1| exonuclease [Pseudomonas entomophila L48] gi|95113031|emb|CAK17759.1| putative exonuclease [Pseudomonas entomophila L48] Length = 236 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 26/218 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V ++ + F +V I + P Sbjct: 42 VVLDLETSGLNLNRDQVLSIGAVAIEDGAIDLGRP--FERTLHRPTQKTNASVLIHRLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 AL G AE + F ++ ++ ++ + + + R DS + Sbjct: 100 S-ALAAGCDPAEALLDLLAFI--GDSPVLAFH-----APFDQRMLARALKDSLGLRLQHV 151 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L M + L D G+E H A AD T Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWIARFGLEVQARHHASADAQVTA 198 Query: 186 ALVWLIR---EKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 L ++ ++ + R K R+ + Sbjct: 199 ELALILFSQARRQQLDSPLQLEQRLKQWRRRKVHNHGF 236 >gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3] gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3] Length = 189 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 50/202 (24%), Gaps = 31/202 (15%) Query: 2 TNH--FVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 N F+ D+ET G + V +I T + +P + + Sbjct: 1 MNTLDFIAIDFETATG---QRTSICEVGICLVRNG--EIAETRSWLVQP-EGNRYSYWNM 54 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GI P+ R AE + I + + ++ +N R+ + Sbjct: 55 QCHGIRPEDTKRAP-SFAEVWQEIAEQYIGEGALLVAHNVPFD----------RSCLEQA 103 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ +R G L L I H A Sbjct: 104 AQLYELTLPELQWDCSLRRARQIYDYGCHT-----------LAYLCEQLSIPEGRHHRAG 152 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D L + + Sbjct: 153 DDAEMCARLYLRELHDSYESYT 174 >gi|170758360|ref|YP_001787672.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree] gi|169405349|gb|ACA53760.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree] Length = 200 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 67/204 (32%), Gaps = 30/204 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q ++++ + I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALI-KPEIYSNLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + + + + ++Y Sbjct: 58 PFVKNLTNLTMDSLNKAN-PFREVYKDFLEFLNKDKNILCIWGMTDMKELFRNIVYYELD 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S + N + A++ + +P + S ++ L + ++ + Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160 Query: 175 HDAKADVYATLALVWLIREKKPKL 198 H+A D + T + + Sbjct: 161 HNAFNDAFYTAEVFKKVYLFYRLQ 184 >gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 232 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FSFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|76798115|ref|ZP_00780369.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae 18RS21] gi|76586523|gb|EAO63027.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae 18RS21] Length = 740 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L LA + IE +AH A Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AD AT L ++ K L + + + L + + + F + Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227 Query: 239 L 239 Sbjct: 228 W 228 >gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] Length = 220 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y S + L Sbjct: 191 DPGYLRWSFNNLDSMSPELRLTLKH 215 >gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 240 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D Q + + F +P + + A+ TG Sbjct: 39 VVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEKAALEFTG 98 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + II +N FD + R Sbjct: 99 IDPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 158 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + + ++ AH Sbjct: 159 RNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------SARIPFDNKEAHS 201 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 202 ALYDTERTTELFCHIVNR 219 >gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 189 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 30/194 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + D + + E +PA+ P V + Sbjct: 1 MRTLAI-DFET--ANERRDSACAVGLAWI-EDGRVVRR-EARLIRPAEMR-FSPFNVRVH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ +F+ + F ++ +N FD ++ Sbjct: 55 GIRPEDVADAP----DFAAAMAPFLPEIAGALVLAHNASFDIGVLAAALAACGLPQPDYT 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + R + G ++L LA GI HDA D Sbjct: 111 ------SLCTLQLARRQW-------------PGQERYRLPALAARLGIAF-RHHDAGEDA 150 Query: 182 YATLALVWLIREKK 195 + + + Sbjct: 151 FVCAEVALAAMREA 164 >gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581] gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581] Length = 221 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 33/222 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYL 52 M F V+ D ET G + D + A V +D + + ++T + P + Sbjct: 10 MAQRFRSFLPVVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGAN 69 Query: 53 PDPEAVFITGITPQK-ALRD-GVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDY 104 + A+ TGI R V EAE I + I+ +N FD Sbjct: 70 VEQSALDFTGIRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHG 129 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 + R + + L ++ + A Sbjct: 130 FLNAAVERCAIKRNPFHPFSSFDTASLAGLIYGQTVLARACR-----------------A 172 Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206 ++ AH A+ D T L + + L + R Sbjct: 173 AGIEFDNGAAHSARYDTERTAELFCAMINRYKDLGGWRLAQR 214 >gi|300361318|ref|ZP_07057495.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] gi|300353937|gb|EFJ69808.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] Length = 177 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET A V V E ++ D + + GI Sbjct: 2 NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I + ++ +N RFD R + + Sbjct: 56 TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYF-- 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + AF PD + KL ++ A I + H+A +D A Sbjct: 111 -------AIDTLATSKAFEPDL----------PNHKLDTVSEALNINLWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] Length = 219 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 67/265 (25%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V + + +P D P+A+ I IT + Sbjct: 4 VIDTETCGL---QGGIVEIASVDI-VDGRIT-NPMSHLVRP--DRPITPQAMAIHRITEE 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E + +N FD W Sbjct: 57 MVADKPWIE-EIIP------YYLGSPWYVAHNASFDRRV---------LPEMSGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVATP----PGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 L+ I + + D + L F + +A +A + Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190 Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + L Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTLKH 215 >gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227] gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112] gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83] gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74] Length = 220 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y S + L Sbjct: 191 DPGYLRWSFNNLDSMSPELRLTLKH 215 >gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 231 Score = 60.2 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITES 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSQWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ +A Sbjct: 145 -ALLIDIIRTTGW-----------TEEEMVNITGRPALLTT--FPFGKYRGKAVSEIAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|327394158|dbj|BAK11580.1| exodeoxyribonuclease X exoX [Pantoea ananatis AJ13355] Length = 223 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 52/193 (26%), Gaps = 40/193 (20%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + A V V + + + D +A+ + Sbjct: 1 MMLR--VIDTETCGL---QGGVVEVASVDV-IDGQIVNPMSDL---VSPDRPISRQAMAV 51 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT + +E + +N FD R Sbjct: 52 HRITEAMVMGKPPIE-------EAILRYHGSPFYVAHNASFD---------RRMLPEMHG 95 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W + + R + WP G + + ++AH A D Sbjct: 96 EW------ICTMTLARQL---------WPGIKYGNQALRHSLKLDVTPPADLHAHRALYD 140 Query: 181 VYATLALVWLIRE 193 Y T AL+ I + Sbjct: 141 CYVTAALLIRIMD 153 >gi|322806628|emb|CBZ04197.1| putative DNA polymerase III epsilon chain [Clostridium botulinum H04402 065] Length = 253 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 58/207 (28%), Gaps = 30/207 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q ++++ + I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + +RN Sbjct: 58 PFVKNLTNLTMDSLNKA-KSFREVYKDFLKFLNKDRNIFCIWGMTDM------KELFRNI 110 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + ++ Y + + +L + N Sbjct: 111 VYYEFHTESMPKEYINV-----QAYTGKYLNYPKSINVGLSNAVELFHITKNNDF----- 160 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H+A D + T + I +K K Y Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187 >gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 218 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 26/215 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +P+++ G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKR---- 136 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + F + AH Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPF-----------DGKQAHS 183 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 A D T L + + L + +++ + Sbjct: 184 ALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218 >gi|167854572|ref|ZP_02477353.1| oligoribonuclease [Haemophilus parasuis 29755] gi|167854327|gb|EDS25560.1| oligoribonuclease [Haemophilus parasuis 29755] Length = 183 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + + K ++ + Sbjct: 6 KQNLIWIDLEMTGLDPEKERIIEIATIITDKDLNILAEGPVLAVHQPDELLNKMSEWCVK 65 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + + E + F I N+I D + Sbjct: 66 THTA---NGL-VERVKQSKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLYKYM 121 Query: 111 YRNFYDSYRWS 121 + Sbjct: 122 PDLADYFHYRH 132 >gi|157736764|ref|YP_001489447.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315635941|ref|ZP_07891202.1| exonuclease [Arcobacter butzleri JV22] gi|157698618|gb|ABV66778.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315479725|gb|EFU70397.1| exonuclease [Arcobacter butzleri JV22] Length = 203 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 20/196 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N +V D ET G + D V + + T F KP+ D + E++ + Sbjct: 28 QNEYVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKD--INIESIKVH 85 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + E I+Q + I I FD Sbjct: 86 HLRQIDLNDALEPEI----GIYQLLDFIGSRPIVGYYIEFDMAIISK------------- 128 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + L + + + D + S K + I + HDA D Sbjct: 129 YTKKYLGIKLPNTPIEVSSIYYDSRKSTSNYGF-IDLKFDTIMKNLNIPVLGKHDALNDA 187 Query: 182 YATLALVWLIREKKPK 197 T + +++ + Sbjct: 188 IMTSMIFLKLKQFINQ 203 >gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] Length = 248 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 43/184 (23%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + I D E + + V++ + I+ +TGI Sbjct: 66 YTILDLEVNNSKPKEGQIIEIGAVKL-KNLVPIDEFSFLIYAKD----IPRYVTKVTGIN 120 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + + E + F +I + FD + F + Sbjct: 121 NQMLKNE-KSQKEILEKFRLFL---GDSVIVAHAADFDFNFLAKQFEKEDLGYLLNP--- 173 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 I + A + L+ L + H A D T Sbjct: 174 -----------------HLCTITLAKKTLKANRYGLKYLKEELNLPEEIDHRALGDARTT 216 Query: 185 LALV 188 + Sbjct: 217 TRVF 220 >gi|22536702|ref|NP_687553.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae 2603V/R] gi|25010639|ref|NP_735034.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae NEM316] gi|22533544|gb|AAM99425.1|AE014216_1 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus agalactiae 2603V/R] gi|23094993|emb|CAD46214.1| Unknown [Streptococcus agalactiae NEM316] Length = 835 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L LA + IE +AH A Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AD AT L ++ K L + + + L + + + F + Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227 Query: 239 L 239 Sbjct: 228 W 228 >gi|77405453|ref|ZP_00782546.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae H36B] gi|77175946|gb|EAO78722.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae H36B] Length = 835 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIXGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L LA + IE +AH A Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AD AT L ++ K L + + + L + + + F + Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227 Query: 239 L 239 Sbjct: 228 W 228 >gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] Length = 337 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 52/188 (27%), Gaps = 27/188 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F D+ET + P +V R +E P D D V I Sbjct: 1 MGLDFTAIDFET--ANGFRGSPCAVGLSKV-RGGVVVEEASWLMRPPEDHDRFDYHNVRI 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI P+ E I F ++ +N FD R+ + Sbjct: 58 HGIRPEDVAGLPR-FGELFPEIGAFI---GGDVLAAHNAAFDLGVIRSALEVSGLP---- 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D + + S L A G+ VN HDA D Sbjct: 110 -----GPAYDYVCTVMLSRRCY-----------SLVSNSLPYAAEEAGVPLVNHHDAAED 153 Query: 181 VYATLALV 188 A ++ Sbjct: 154 ARACAGIL 161 >gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 468 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 28/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V ++ ++ S +PAD L +V Sbjct: 9 IAFFDVETT--VPNRGQRFAILEFGSILVCPKKLTELRSYTTL-VQPADLSLISSLSVRC 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + A+ + ++ G+N +RFD R + Sbjct: 66 NGIKRDDVVLAPL-FADIADTVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ + H + D Sbjct: 118 QPPEPKGAIDSLGLL------------TQQFGRRAGDMKMATLARYFGLGN-QTHRSLDD 164 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 165 VRMNLEVLKYC 175 >gi|251780665|ref|ZP_04823585.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084980|gb|EES50870.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 243 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 27/198 (13%) Query: 4 HFVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 ++++YD E F + D Q V+++ E + + KP P Sbjct: 2 NYIVYDLE-FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFN-RLIKPTVHTEIHP 59 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T IT + + ++ +F + + +N Sbjct: 60 FIKDLTQITTEMVNSEKY-FSDVYDDFIEFIGNKEFTVCIWGTSDI------KELLKNVK 112 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 D+ D+ ++ ++ G + N H Sbjct: 113 FHNLEEIDDLRKYIDVQNLA----------SKYIKTQKGTKVGLKTAIEFFNLPIEKEFH 162 Query: 176 DAKADVYATLALVWLIRE 193 DA D + T + + Sbjct: 163 DAFNDAHYTAQIFKKLYT 180 >gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans] gi|133738018|emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans] Length = 198 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + V D E G D D + A V D + I VF +D+ L +A Sbjct: 24 NLVWLDMEMTGLDCDNDCIIEIAVVVTDAELNIIGEGPVFAIHQSDETLDKMDAWNKGTH 83 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ V EA+ + +F + N+I D + + Sbjct: 84 GRSGLIERVKASTVSEAQAEEELIEFLKKYVPKGKSPMCGNSICQDRRFMARGMPKLEAF 143 Query: 117 SYRW 120 + Sbjct: 144 FHYR 147 >gi|307110015|gb|EFN58252.1| hypothetical protein CHLNCDRAFT_12089 [Chlorella variabilis] Length = 171 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 12/116 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M + D E G DV D+ Q A + D E++ ++ L + V Sbjct: 4 MKQPLIWIDLEMTGLDVESDQILQIAVICTDGAMEEVVEGPELAIHQPEEVLQTMNEWCV 63 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G + Q AE +++ +F I N++ D + R R Sbjct: 64 EQHGKSGLTQACRDSTTSLAEAEQQVLEF--------IAGNSVHVDLAFMRKHMPR 111 >gi|311743097|ref|ZP_07716905.1| oligoribonuclease [Aeromicrobium marinum DSM 15272] gi|311313777|gb|EFQ83686.1| oligoribonuclease [Aeromicrobium marinum DSM 15272] Length = 203 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 37/201 (18%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M + V D E G + D + A + D + E + KP + L + Sbjct: 1 MNDKLVWIDCEMTGLSLTHDALIEIAVLVTDFELEVLGPGIDLVVKPPQEALDQMNEVVT 60 Query: 59 FIT---GITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + G+ + L G+ A+ + ++ P + N++ D + Sbjct: 61 RMHTASGLITE--LDAGLTLQDAQAQVLDHVREYVKEPGKAPLAGNSVGTDRAFLAR--- 115 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 D D+ + + +P A S Sbjct: 116 ----DMPELENWLHYRVIDVSSIKELSRHW------FPRAYFAAPSK------------- 152 Query: 172 VNAHDAKADVYATLALVWLIR 192 H A D+ ++ + R Sbjct: 153 AGHHRALTDIAESIEELRYYR 173 >gi|269795775|ref|YP_003315230.1| 5' exoribonuclease [Sanguibacter keddieii DSM 10542] gi|269097960|gb|ACZ22396.1| oligoribonuclease (3'->5' exoribonuclease) [Sanguibacter keddieii DSM 10542] Length = 220 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 7/113 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D+ D + A V D + + +P D+ L + + Sbjct: 8 DRIVWIDCEMTGLDLGADALVEVAAVVTDSELTVLGEGIDIIVRPPDEALEQMNDFVRDM 67 Query: 61 T---GITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 G+ + A + EA+ + F P +G N++ D + Sbjct: 68 HTSSGLIDELAAGTTLADAEAQVLDYLRTFVPEPGKAPLGGNSVATDKMFLER 120 >gi|153802855|ref|ZP_01957441.1| oligoribonuclease [Vibrio cholerae MZO-3] gi|124121610|gb|EAY40353.1| oligoribonuclease [Vibrio cholerae MZO-3] Length = 156 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + V E E + F I N+I D + Sbjct: 66 HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|77413703|ref|ZP_00789886.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus agalactiae 515] gi|77160248|gb|EAO71376.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus agalactiae 515] Length = 835 Score = 60.2 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L LA + IE +AH A Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AD AT L ++ K L + + + L + + + F + Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227 Query: 239 L 239 Sbjct: 228 W 228 >gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68] Length = 220 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ P +Q ++ H A D Y T Sbjct: 97 -----ICTMKLARRLWPGIKYSNMALYRTRKLNVQT------PPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 382 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 10/112 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D ET G DR + A V++DR P+ + I Sbjct: 3 YAVVDVETTGFR-RSDRVVEVAVVQLDRDRRVTGEWCTL---LNPGRDLGPQ--HVHRIR 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 F+ ++ +N+ FD + F R D Sbjct: 57 AADVWGAPT----FALAAGALARRLAGRVLVAHNLAFDARFLAAEFGRVGVD 104 >gi|226372920|gb|ACO52085.1| Three prime repair exonuclease 2 [Rana catesbeiana] Length = 221 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 25/204 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV----------RVDRQWEK-IESTEVFFCKPADDY 51 F+ D E G + L + + V + E + C D Sbjct: 6 KTFIFLDLEATGLNEDLPKITELCLVAVHASSLKNPTTNDSGEIQLPRVLDKLCLCIDPV 65 Query: 52 LP-DPEAVFITGITPQKALR-DGVVEAE-FSRRIHQFFSV--PNTCIIGYNNIRFDDYYS 106 P P+A ITG+ + + E + QF + C++ +N +D Sbjct: 66 KPLTPKASEITGLDNELLRTCEKQTFDESLINTVIQFINRQAQPVCLVAHNGFYYDYPLL 125 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 + + +D S +D ++A + P G S Sbjct: 126 KTELLQQDHDL--------CSSILCVDSLQAFRYLHNEEKPRPEYIKGQFSLIEIH-RKF 176 Query: 167 NGIEHVNAHDAKADVYATLALVWL 190 G E +H A+ DV + Sbjct: 177 FGKEPNFSHYAEGDVLTLILAFIC 200 >gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7] gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7] Length = 224 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 35/218 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYL 52 M F V+ D ET G + A D + A V +D + FF +P + Sbjct: 22 MARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGAN 81 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 +P A+ TGI A+++ E R I + I+ +N FD + Sbjct: 82 IEPAALEFTGIKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFL 141 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + S +D + Y + L A Sbjct: 142 NAAVARTGIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 182 Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYL 202 G+E N AH A+ D T L I + ++ ++ Sbjct: 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGGWM 220 >gi|91775826|ref|YP_545582.1| oligoribonuclease [Methylobacillus flagellatus KT] gi|91709813|gb|ABE49741.1| Exonuclease [Methylobacillus flagellatus KT] Length = 183 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 11/131 (8%) Query: 1 MT----NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M ++ + D E G DR + A V D + + + V +D L + Sbjct: 1 MMPQHNDNLIWLDMEMSGLQPDSDRILEVAAVVTDAELNVLGESPVLVIHQSDAVLDGMD 60 Query: 57 AVF--ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 A G + +K + EA S+++ F + N+I D + Sbjct: 61 AWNKGTHGRSGLIEKVKASSLDEAAASQQMIDFLKEHVPAGKSPMCGNSICQDRRFMARY 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEAYFHYR 131 >gi|238787531|ref|ZP_04631329.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641] gi|238724318|gb|EEQ15960.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641] Length = 181 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V +D+ L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLALMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F T I N++ D + Sbjct: 65 THTGSGL-VERVKASPFNDHDAELQTIEFLQQWVPAGTSPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|76786927|ref|YP_329306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae A909] gi|77411574|ref|ZP_00787916.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae CJB111] gi|76561984|gb|ABA44568.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae A909] gi|77162359|gb|EAO73328.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae CJB111] Length = 835 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L LA + IE +AH A Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AD AT L ++ K L + + + L + + + F + Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227 Query: 239 L 239 Sbjct: 228 W 228 >gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82] Length = 220 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEKMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLESMSPELRLTLKH 215 >gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] Length = 222 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 55/188 (29%), Gaps = 38/188 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V V + + C D +A+ + IT Sbjct: 4 VIDTETCGL---QGGVVEVASVDV-IDGQILNPMSDLIC---PDRPISHQAMAVHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + R H + +N FD R W Sbjct: 57 MVADKPTIE-QAIGRYH------GSPHYVAHNASFD---------RRMLPEMPGQW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R + WP + G + + ++AH A D Y T A Sbjct: 97 --ICTMTLARQL---------WPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAA 145 Query: 187 LVWLIREK 194 L+ I EK Sbjct: 146 LLIRIMEK 153 >gi|258620689|ref|ZP_05715724.1| oligoribonuclease [Vibrio mimicus VM573] gi|258586887|gb|EEW11601.1| oligoribonuclease [Vibrio mimicus VM573] Length = 181 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIVIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + V E E + F I N+I D + Sbjct: 66 HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYRHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 218 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 26/215 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + F +P + +P+++ G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKR---- 136 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + F + AH Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPF-----------DDKQAHS 183 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211 A D T L + + L + +++ + Sbjct: 184 ALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218 >gi|168180760|ref|ZP_02615424.1| exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182668520|gb|EDT80499.1| exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 253 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 30/207 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q ++++ + I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSNLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + + + ++Y Sbjct: 58 PFVKNLTNLTMDSLNKAN-PFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELD 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S + N + A++ + +P + S ++ L + ++ + Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H+A D + T + I +K K Y Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187 >gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 217 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 29/200 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D ++ + A ++D ++ + F K + PE++ G Sbjct: 20 VVVDVETAGLDANINALLEIAVATFKMDEYGWLCVDGSLNFHIKSFPGAIIQPESLAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E E I + + II +N FD + R + Sbjct: 80 IDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFLMAAVERVSF- 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 N + + D + L G+ A Sbjct: 139 ----MEKNPFHPFVMFDTATLSGLVFGQTV-------------LAKACACAGVFFDKNKA 181 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + K Sbjct: 182 HSALYDTERTAMLFCELVNK 201 >gi|59712989|ref|YP_205765.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59481090|gb|AAW86877.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 213 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 66/205 (32%), Gaps = 20/205 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D ET + A +++ + ++ +++ K + +++ I Sbjct: 28 DELVSIDCETTSLNPNHAELVSIAAIKI--KNNRVLTSQTIHLKLTPPQSLNSDSIKIHQ 85 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + Q G+ E + ++ +F N I+GY+ R+D R+F S Sbjct: 86 LRHQDL-HHGLSEQQAMTQLLEFI--GNRHIVGYHI-RYDKKILDRACLRHFSHPLPNS- 140 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 ++ + + + ++ ++ G+ + HDA D Sbjct: 141 -----------LIEVSHIYHNKLERLLPNAYY--DLSIEAISKHLGLPQADRHDALEDAI 187 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 A + + + + Sbjct: 188 AAALIYVRLTHGDFPDIPSSKNAHS 212 >gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96] gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96] Length = 207 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 54/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + + A V V+ +I P + D A+ G Sbjct: 18 VVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITERYTTHVIPFKNAELDEAALKFNG 77 Query: 63 ITP----QKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I P + A+ + + I + N I+ +N FD + R Sbjct: 78 IDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAAIQRTQIK 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + D + ++ AH Sbjct: 138 ------RSPFHPFSTFDTATLGGLVYQQTV-----------LAKIAQTAGLDWDNEKAHS 180 Query: 177 AKADVYATLALVWLIREK 194 A D T L +I + Sbjct: 181 ALYDAEKTAELFCMIVNR 198 >gi|241573853|ref|XP_002403219.1| three prime repair exonuclease, putative [Ixodes scapularis] gi|215500196|gb|EEC09690.1| three prime repair exonuclease, putative [Ixodes scapularis] Length = 192 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 20/194 (10%) Query: 3 NHFVIYDYETFGRDVALDR---PAQFAGVRVDR-QWEKIEST-----EVFFCKPADDYLP 53 V +D ET + + A V VDR +EK + Sbjct: 8 QTLVFFDLETTSL-PRAGQRVGITELALVAVDRAHFEKQAKPTFRVLNKLTLCIRPEVYL 66 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFY 111 +P A +G++ + + + F + C++ +N FD R Sbjct: 67 EPMAAQKSGMSEALLGNQ-RLFRDAVPSLRAFLASLPAPVCLLAHNGDYFDFPILRVSSR 125 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R D G D ++A+ + GA + L L Sbjct: 126 RVQGD-------LGLPGLQCCDTIKALRQIVQAAPPPKKKVKGAGPYSLDMLYKRFCGRR 178 Query: 172 VNAHDAKADVYATL 185 NAH A+ D L Sbjct: 179 SNAHQAEQDCVDLL 192 >gi|152978666|ref|YP_001344295.1| oligoribonuclease [Actinobacillus succinogenes 130Z] gi|171704275|sp|A6VN13|ORN_ACTSZ RecName: Full=Oligoribonuclease gi|150840389|gb|ABR74360.1| Exonuclease RNase T and DNA polymerase III [Actinobacillus succinogenes 130Z] Length = 182 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + K +D + Sbjct: 5 KENLIWIDLEMTGLDPEQERIIEIATIVTDKNLNILAEGPVLAVHQPNQLLDKMSDWCIK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + E + F + I N++ D + Sbjct: 65 THTA---NGL-VERVKASKLTERAAELQTIDFLKLWVPKGASPICGNSVAQDKRFLFKYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PDLADYFHYRH 131 >gi|149203420|ref|ZP_01880390.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035] gi|149143253|gb|EDM31292.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035] Length = 172 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE-----KIESTEVFFCKPADDYLPDPEAVFI 60 ++ D ET G D Q A + + +I+ F EA + Sbjct: 50 LVLDVETTGLSHEADEVIQLAMLPFTYELNTGRILEIDHDRGFEGLREPGVPISEEANLV 109 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+T + + I + V + ++ +N FD ++ + Sbjct: 110 TGLTAETVAGQTIN-----GAIVEAL-VADADLVIAHNSSFDRVMVEKLWPCFAEKPWGC 163 Query: 121 S 121 + Sbjct: 164 T 164 >gi|306834330|ref|ZP_07467447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus bovis ATCC 700338] gi|304423503|gb|EFM26652.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus bovis ATCC 700338] Length = 195 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F Q + V+ ++ +++S + + D +TGIT Sbjct: 7 YIAFDLE-FNTVAEKSHIIQVSAVKF-KEGHEVDSFDTY---VYTDVPLQSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K E F T ++GYN ++ D Sbjct: 62 SEKIANAPK-LDEVLADFKTFVGE--TALVGYNALKSDLPLLAENELD------------ 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + + + + +G S KL +A GI + H++ D T Sbjct: 107 -------LTELYKVDLYDEAFERRSTDLNGIASLKLTSVAEFLGIS-GHGHNSLEDARMT 158 Query: 185 LALVWLIREKKPK 197 + E Sbjct: 159 ALVYEKFMEFDEN 171 >gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 253 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 8/112 (7%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66 +D ET G + R A V V AD +P P EA I GI+ + Sbjct: 22 FDLETTGTEPGESRIVTAAVVEVRG-----GEVRARRGWLADPGIPIPGEAAAIHGISTE 76 Query: 67 KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +A+ +G AE + + ++ N FD R Sbjct: 77 RAVAEGRPAAEVAEEVAAALVEHWRGGAVVVAYNAAFDLTLLSAELARYRLP 128 >gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50] gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)] gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)] Length = 220 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAIAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|149927960|ref|ZP_01916210.1| oligoribonuclease [Limnobacter sp. MED105] gi|149823399|gb|EDM82632.1| oligoribonuclease [Limnobacter sp. MED105] Length = 191 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 9/167 (5%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGIT 64 D E G D D+ + A V D + +E V +DD L +A G + Sbjct: 2 WVDMEMTGLDPFNDKVIEVAVVVTDSELNVLEEGPVLAIHQSDDILAGMDAWNTSTHGKS 61 Query: 65 --PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + + EA+ + +F + P + N+I D + Y ++Y Sbjct: 62 GLTARVKESVIDEAQAEELLIEFLTKYIGPGKSPMCGNSICQDRRFM--AKYMPKLEAYF 119 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 + S L + + +L Sbjct: 120 HYRNLDVSTLKELCKRWNPTTARKFVKKTKHTALADIHESIDELRFY 166 >gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1] gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2] gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1] gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016] gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1] gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016] Length = 224 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 35/218 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYL 52 M F V+ D ET G + A D + A V +D + FF +P + Sbjct: 22 MARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGAN 81 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 +P A+ TGI A+++ E R I + I+ +N FD + Sbjct: 82 IEPAALEFTGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFL 141 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + S +D + Y + L A Sbjct: 142 NAAVARTGIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 182 Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYL 202 G+E N AH A+ D T L I + ++ ++ Sbjct: 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGGWM 220 >gi|226307350|ref|YP_002767310.1| oligoribonuclease [Rhodococcus erythropolis PR4] gi|229494052|ref|ZP_04387821.1| oligoribonuclease [Rhodococcus erythropolis SK121] gi|226186467|dbj|BAH34571.1| oligoribonuclease [Rhodococcus erythropolis PR4] gi|229319121|gb|EEN84973.1| oligoribonuclease [Rhodococcus erythropolis SK121] Length = 202 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 12/150 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV-F 59 + V D E G + D+ + A + D + DD L P+ V Sbjct: 5 QDKLVWIDCEMTGLRLESDKLIEIAALVTDSDLNILGEGVDIVIHADDDALAAMPDVVKK 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 + G+T ++ + V AE + + + T + N+I D + Sbjct: 65 MHAKSGLT-EEVRKSTVTLAEAEKEVLAYIRKHVPVAGTAPLAGNSIATDRGFISR--DM 121 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D+Y S L + Sbjct: 122 TALDTYLHYRMIDVSSIKELSRRWYPRIYF 151 >gi|167563592|ref|ZP_02356508.1| oligoribonuclease [Burkholderia oklahomensis EO147] gi|167570756|ref|ZP_02363630.1| oligoribonuclease [Burkholderia oklahomensis C6786] Length = 201 Score = 59.8 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G + DR + A V + + VF +D+ L D Sbjct: 19 NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + V EA+ + +I F P + N+I D + Sbjct: 79 GRSGLIDRVRASTVTEADAAAQIEAFLGQHVPPGKSPMCGNSICQDRRFMARWMPELERF 138 Query: 117 SYRW 120 + Sbjct: 139 FHYR 142 >gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 177 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 30/205 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++++D ET + +R + + V E F D +T Sbjct: 1 MYRYIVFDVET--PNRYNNRMSAIG-IAVIENGAVTEEY---FSYVDPQTYFDRFNTQLT 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI E RI S ++ +N FD + +Y Sbjct: 55 GINKYTVSGAP-TFPELWERIEPIMSSG---VLAAHNAVFDLGVLKK-----CLKAYGIE 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W N + + R R S KL L GI + H A +D Sbjct: 106 WKNTVKYCCTVQMGR--------------RVLPGISHKLNVLCEHYGIALDH-HKADSDS 150 Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206 A ++ E + E++ +R Sbjct: 151 RACADILLRYFESGAQEREHIRTFR 175 >gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa] gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa] Length = 244 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 25/190 (13%) Query: 5 FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V +D ET + A R +F + V R+ +++S +P D ++ Sbjct: 12 IVFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLI-RPEDLSAVALKSGRCD 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + E E + +I + G+N RFD + F + Sbjct: 71 GITREAVANAPAFE-EVADKIFTILN--GRIWAGHNIQRFDCVRIKEAFAEIGRPAP--- 124 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + F G+ A + K+ LA G+ H + DV Sbjct: 125 --------------MPVGMFDSLGVLTEKFGRRAGNMKMATLATYFGLGQQK-HRSLEDV 169 Query: 182 YATLALVWLI 191 L ++ Sbjct: 170 RMNLEVLKHC 179 >gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905] gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74] Length = 220 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLESMSPELRLTLKH 215 >gi|84386967|ref|ZP_00989991.1| oligoribonuclease [Vibrio splendidus 12B01] gi|84378257|gb|EAP95116.1| oligoribonuclease [Vibrio splendidus 12B01] Length = 181 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P + E T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65 Query: 62 GITPQKAL---RDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 V E E ++ +F I N+I D + Sbjct: 66 HTGSGLVKRIQESTVSEQEAIQQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|311104954|ref|YP_003977807.1| oligoribonuclease [Achromobacter xylosoxidans A8] gi|310759643|gb|ADP15092.1| oligoribonuclease [Achromobacter xylosoxidans A8] Length = 181 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 N V D E G D +R + A V + + V D L ++ Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQPDSLLDAMDSWNKST 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K + E+E + F + + N I D + R Sbjct: 66 HGKSGLIDKVKASTISESEAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYMPRLEQ 125 Query: 116 DSYRW 120 + Sbjct: 126 FFHYR 130 >gi|56707099|ref|YP_170696.1| putative exonuclease [Streptomyces albulus] gi|56675918|dbj|BAD80780.1| putative exonuclease [Streptomyces albulus] Length = 288 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 10/168 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET D + + A + + KP + DP+A + +T Sbjct: 131 VLLDTETTALD---GQIIEIA-ILDAATGRPL---LDTLVKPTEGVEIDPQAHAVHRLTL 183 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + ++ + + I+ Y+ + + DN Sbjct: 184 EDLADAP-PWEKVLPKVRKLTK--DRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNW 240 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 S +G D L+ ++ +G H Sbjct: 241 WCLMQARSQFYGHGRRSLNGPHRAMGDCRKERELLKKISEGHGRLHQP 288 >gi|93006558|ref|YP_580995.1| oligoribonuclease [Psychrobacter cryohalolentis K5] gi|92394236|gb|ABE75511.1| Exonuclease [Psychrobacter cryohalolentis K5] Length = 195 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 V D E G D D + A V D + VF K +D L D Sbjct: 17 KKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDQKLNGMDDWNTK 76 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + R V AE +F + + N+I D + Sbjct: 77 QHGQSGLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELE 136 Query: 115 YDSYRW 120 + Sbjct: 137 RFFHYR 142 >gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII] gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII] gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866] Length = 229 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F KP + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M A + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|325917447|ref|ZP_08179656.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria ATCC 35937] gi|325536321|gb|EGD08108.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria ATCC 35937] Length = 194 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 54/207 (26%), Gaps = 48/207 (23%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59 + + D E G D D + A + D Q + + P A Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPEL-------AIAHPLATLEAM 61 Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 + Q+ L V A+ + F + N+I D + Sbjct: 62 DEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHR 121 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 R + D+ + ++P ANG Sbjct: 122 QMSRLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANG 154 Query: 169 IEHVNAHDAKADVYATLALVWLIREKK 195 +AH A +DV ++ + R+ Sbjct: 155 FAKSSAHTALSDVRDSIDELRHYRQFM 181 >gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium moorei F0204] gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium moorei F0204] Length = 186 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 31/188 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFA--GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 V D+ET A ++ A GV V I+ + P + Sbjct: 1 MTKIVAIDFET-----ANNQMASVCSVGVAVMEDGVIIDHYYSLIKPEENVGYFSPYNIR 55 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GIT + +E + +F +I +N RFD + Sbjct: 56 IHGITARDVKGAP-TFSEIYSELTGYFED---AVIVAHNARFDMSCLKQTCLNTGKKIPV 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D + + +L D+ GIE + H+A + Sbjct: 112 LEY---------FDTVELCKRVFSNLEH----------HRLNDVCEYIGIELDH-HNALS 151 Query: 180 DVYATLAL 187 D L + Sbjct: 152 DANGCLEI 159 >gi|90407113|ref|ZP_01215302.1| oligoribonuclease [Psychromonas sp. CNPT3] gi|90311835|gb|EAS39931.1| oligoribonuclease [Psychromonas sp. CNPT3] Length = 179 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI 60 N+ + D E G + D + A + D +E P + E Sbjct: 3 KNNLIWIDLEMTGLNPETDLIIEIATIVTDSDLNVLEEGPAFVIHAPKQNMDAMDEWCTT 62 Query: 61 T----GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+T Q+ L + A+ + F + N+I D + Sbjct: 63 HHGDSGLT-QRVLESDISCAQAEQATLAFLKKWTLQGASPLCGNSIGQDRRFLVRYMPEL 121 Query: 114 FYDSYRWS 121 + S Sbjct: 122 EAYFHYRS 129 >gi|13097411|gb|AAH03445.1| Rexo2 protein [Mus musculus] Length = 205 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 7 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + V + F P C + N++ D + + Sbjct: 67 EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 126 Query: 114 FYDSYRW 120 + Sbjct: 127 MKHLHYR 133 >gi|56707385|ref|YP_169281.1| oligoribonuclease [Francisella tularensis subsp. tularensis SCHU S4] gi|110669856|ref|YP_666413.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC198] gi|224456460|ref|ZP_03664933.1| oligoribonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|254370915|ref|ZP_04986920.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033] gi|254874223|ref|ZP_05246933.1| oligoribonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|81820821|sp|Q5NI61|ORN_FRATT RecName: Full=Oligoribonuclease gi|123169637|sp|Q14JL3|ORN_FRAT1 RecName: Full=Oligoribonuclease gi|56603877|emb|CAG44861.1| Oligoribonuclease [Francisella tularensis subsp. tularensis SCHU S4] gi|110320189|emb|CAL08244.1| Oligoribonuclease [Francisella tularensis subsp. tularensis FSC198] gi|151569158|gb|EDN34812.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033] gi|254840222|gb|EET18658.1| oligoribonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|282158524|gb|ADA77915.1| oligoribonuclease [Francisella tularensis subsp. tularensis NE061598] Length = 178 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G DV + + A + D+ I E D+ L + + Sbjct: 5 DNLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T Q+ + ++I +F + + N+I D + Y Sbjct: 65 HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 164 >gi|224824186|ref|ZP_03697294.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum 2002] gi|224603605|gb|EEG09780.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum 2002] Length = 181 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 11/128 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N+ + D E G + DR + A V D Q + + V D L Sbjct: 5 QNNLIWLDMEMTGLNPDSDRIIEIAVVVTDGQLNVLAESPVLAIHQPDSVL--DGMDEWN 62 Query: 62 GITP------QKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYR 112 T ++ + E + ++ F T + N+I D + R Sbjct: 63 KSTHARSGLIERVKASTLSETDAEEQMLAFLQEYVPAKTSPMCGNSICQDRRFMARGMPR 122 Query: 113 NFYDSYRW 120 + Sbjct: 123 LEAFFHYR 130 >gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024] gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359] gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli] gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli] gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359] gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125] Length = 220 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHL---VHPDRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADMTGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999] Length = 212 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 63/208 (30%), Gaps = 26/208 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 VI D ET G + D + A VR+D E+ + P + +P A+ G Sbjct: 17 VIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHINPFEGANIEPAAIEFNG 76 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I ALR V E E + + + S +I +N FD + R Sbjct: 77 IKVDCALRGAVDETEAMKGLSKAISKLQKAANCQRSVIVAHNASFDMSFVNAALART--- 133 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R + S D + G T A + AH Sbjct: 134 --------NVKRSPFHPFV------SFDTTSLAALTLGQTVLVKACEAANIAFDQKQAHG 179 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 A D T L + + L + + Sbjct: 180 ALYDAQRTAELFCFMMNRYQSLGGWPLE 207 >gi|328850543|gb|EGF99706.1| hypothetical protein MELLADRAFT_94133 [Melampsora larici-populina 98AG31] Length = 194 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 56/195 (28%), Gaps = 17/195 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVF 59 + V D E G D++ ++ + A + D+ E ++ + + L Sbjct: 5 QDRLVWIDCEMTGLDLSKEQIIEIACIITDKNLEPLDEGISYVIGVEKNILDQMGEWCTV 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRNIFYR 112 G + ++ L+ + + + + +I N++ D + Sbjct: 65 QHGKSGLTEECLKSKFSLKQVDQLVRDYIERHIPNSRGQAVIAGNSVYADKAFLLKKISN 124 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 F + + R + S + D K Sbjct: 125 FFIMIWNVKQEKDMPITAEYLHYRIVDVSSIKELARRWNHDVFLKSK--------DTSTP 176 Query: 173 NAHDAKADVYATLAL 187 +AH A D+ ++ + Sbjct: 177 SAHRALDDIRDSIKV 191 >gi|330447523|ref|ZP_08311171.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491714|dbj|GAA05668.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 185 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 8/126 (6%) Query: 3 NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + V +D E GR + +D KI + +PA D + P Sbjct: 4 DRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEI-SPFCT 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI P+ ++G + + I Q F + + DD + Sbjct: 63 ELTGIKPEIVEKNGKPLSVILKSIEQKFGGRHKIYAAW---GHDDRILKKECLAKDLKVP 119 Query: 119 RWSWDN 124 + N Sbjct: 120 FREYLN 125 >gi|73540610|ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134] gi|72118023|gb|AAZ60286.1| Exonuclease [Ralstonia eutropha JMP134] Length = 210 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 12/140 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ V D E G DR + A V D + + V +D L D Sbjct: 14 NNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSDAVLDGMDNWNKGT 73 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN-----IF 110 G + K + E + + F + + N+I D + Sbjct: 74 HGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFMARYMPKLEA 133 Query: 111 YRNFYDSYRWSWDNGNSRWD 130 + ++ + + RW+ Sbjct: 134 FFHYRNLDVSTLKELCKRWE 153 >gi|42518811|ref|NP_964741.1| hypothetical protein LJ0886 [Lactobacillus johnsonii NCC 533] gi|41583097|gb|AAS08707.1| hypothetical protein LJ_0886 [Lactobacillus johnsonii NCC 533] Length = 177 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET A V V E ++ D + I GI Sbjct: 2 NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIKIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I + ++ +N RFD R + + Sbjct: 56 TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L +A + + KL ++ A I + H+A +D A Sbjct: 110 ---FAIDTLATSKAFEPYL-------------PNHKLDTVSEALNINLWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|296118714|ref|ZP_06837290.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306] gi|295968203|gb|EFG81452.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306] Length = 222 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 8/118 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A + D + I D+ L D + Sbjct: 21 DRLVWIDLEMTGLDPKRHTIVEIAAIITDAELNVIGEGLDIVIHATDEELSRMDDFVTNM 80 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 + ++ E + + + + N+I D + R R Sbjct: 81 HNSSGLTEEIKAATTTLKEAETAVLELIEKHCDPEHPAPLAGNSIATDRTFIREYMPR 138 >gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] Length = 309 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + + IE KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGKIIEEVHHLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + + + +I +F+ ++ +N FD RN + Y Sbjct: 57 RPRMVQDE-LEFDKVWEKIKHYFNEN---LVIAHNASFDISVL-----RNTLELYNIE-- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + M+ F + +L + G E HDA AD A Sbjct: 106 --MPSFQYICTMKLSKNFYSNLDN----------ARLNTVNNFLGYEF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CGNIL 157 >gi|326470961|gb|EGD94970.1| RNA exonuclease Rex2 [Trichophyton tonsurans CBS 112818] gi|326482205|gb|EGE06215.1| RNA exonuclease Rex2 [Trichophyton equinum CBS 127.97] Length = 188 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 17/132 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---------STEVFFCKPADDYL 52 ++ V D E G D A DR Q D Q +E + + + Sbjct: 7 SDPLVWIDCEMTGLDPANDRILQICCYITDAQLNLLEPEGFEAVVHQPQEVLDRMNAWCI 66 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRN 108 +T L E +R + + T ++ N++ D + Sbjct: 67 DTHGRSGLT----AAVLASPTTAEEAARDLLAYIKQYVPTQRTALLAGNSVHADRAFLAQ 122 Query: 109 IFYRNFYDSYRW 120 Y D + Sbjct: 123 PPYVQVLDWLHY 134 >gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] Length = 215 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 60/199 (30%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + +D I ST F +P + + EA+ G Sbjct: 20 VVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANIEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V EAE + I++ + N II +N FD + R Sbjct: 80 IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + ++ AH Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------TAGMEFDNKEAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 183 SALYDTQKTAELFCGIVNK 201 >gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755] gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755] Length = 177 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + A V V + + + + + + I GI Sbjct: 2 NFIAMDFET--ANYQKHSACSLALVMV-QDSKIVGEYYTL---IQPETEFFWKNIQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + ++I Q+ N+ I+ +N + D Y S Sbjct: 56 RPEDVQEAPK-FPDVWKQIQQY-YQLNSLIVAHNAGFDTGVLAGC------LDYYGLSQP 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L +R P+ KL + I +N HDA D A Sbjct: 108 N----YLSLCTVRTSRKLYPEFTN----------HKLNTVCEQLQIPLLNHHDALEDSRA 153 Query: 184 TLALVWLIREK 194 ++ E+ Sbjct: 154 CAQILLRQEEE 164 >gi|320547520|ref|ZP_08041806.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus equinus ATCC 9812] gi|320447865|gb|EFW88622.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus equinus ATCC 9812] Length = 195 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F + Q + V+ + E+I+S + + D +TGIT Sbjct: 7 YIAFDLE-FNTVAEVSHIIQVSAVKF-KDGEEIDSFDTY---VYTDVPLQSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K + + F T ++GYN ++ D Sbjct: 62 SEKIAKAPK-LDKVLANFKDFVGK--TALVGYNALKSDLPLLAENNLD------------ 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + + + S +G + KL +A GI + H++ D T Sbjct: 107 -------LTELYKVDLYDEAYERRSSDLNGIANLKLTSVADFLGIS-GHGHNSLEDARMT 158 Query: 185 LALVWLIREKKPK 197 + E Sbjct: 159 ALVYEKFMEFDEN 171 >gi|148927126|ref|ZP_01810755.1| oligoribonuclease [candidate division TM7 genomosp. GTL1] gi|147887420|gb|EDK72865.1| oligoribonuclease [candidate division TM7 genomosp. GTL1] Length = 184 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%) Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK------PADDYL 52 M + D E G D DR + A + D +E++ E + DD++ Sbjct: 7 MKKHAKLLWLDLEMTGLDPQRDRVLEVAAIATDWNFEEMAVIESVVHQSPKVLDLMDDWV 66 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF----SVPNTCIIGYNNIRFDDYYSRN 108 A G+T ++ V E + + QF + ++ N+I D + R Sbjct: 67 RSQHASS--GLT-ERVRASDVSETDAEDILLQFIDSVYKDGDPVVLAGNSIHQDRRFIRQ 123 Query: 109 IFYRNFYDSYRWS 121 + R + Sbjct: 124 YWQRLDARLHYRM 136 >gi|113461243|ref|YP_719312.1| oligoribonuclease [Haemophilus somnus 129PT] gi|112823286|gb|ABI25375.1| oligoribonuclease [Haemophilus somnus 129PT] Length = 184 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + + + + Sbjct: 5 KQNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAEGPVLAIHQSNELLNNMNEWCVK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 + G+ ++ + E + F I N++ D + N Sbjct: 65 THTS---NGL-IERVKNSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFLVNYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PELAEYFHYRH 131 >gi|329667640|gb|AEB93588.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii DPC 6026] Length = 177 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET A V V E ++ D + I GI Sbjct: 2 NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I + ++ +N RFD R + + Sbjct: 56 TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L +A + + KL ++ A I + H+A +D A Sbjct: 110 ---FAIDTLATSKAFEPYL-------------PNHKLDTVSEALNINLWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|319948216|ref|ZP_08022374.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] gi|319438119|gb|EFV93081.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] Length = 240 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 17/204 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFIT 61 + D ET G D DR V VD + S + + D ++ + Sbjct: 45 LLAVDVETTGLDPRRDRVVSVGFVPVDGDRIVLRGAGSMVLRSDGRSGDDGGVGQSATVH 104 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T G AE R+ + ++ + + + + R + Sbjct: 105 GLTDDDVA-HGSGVAEVLDRVLTALT---GRVLLAHYSTIEVDFLGVLCRRVY------- 153 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAHDAKAD 180 + +D + GI D + +L G+ AHDA D Sbjct: 154 --GVRPPLEAVDTLELQRRILGGGIGMGFTADPSPDELRLWGARGRYGLPRYRAHDAAVD 211 Query: 181 VYATLALVWLIREKKPKLFEYLYD 204 A L + + Sbjct: 212 ALACAELYLAQVAELRDRGARVLR 235 >gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627] gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627] Length = 220 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-VDGKIV-NPMSHLVRP--DRPITPQAMAIHRITES 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLLTT--FTFGKYRGKAVSEVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|78776758|ref|YP_393073.1| exonuclease [Sulfurimonas denitrificans DSM 1251] gi|78497298|gb|ABB43838.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 234 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 56/205 (27%), Gaps = 23/205 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + D+ + V + + + +A I IT Sbjct: 2 LIFLDVETTGLE-NGDKICSIGIICVSET-----AIFSKYELVNEGKKISSKASSINHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + I + ++ II +N ++ F Sbjct: 56 NEMIKDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGK--------- 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182 ++D +R P+ ++ + +D AH+A +D Sbjct: 107 ------VVDTLRVTKHLIPECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDAL 160 Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207 L + E K +N Sbjct: 161 HVKLLYEYLLEIKEHDELVALSLKN 185 >gi|328464770|gb|EGF36087.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus MTCC 5462] Length = 140 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 9/142 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET + A V V + ++S DP+ + I GIT Sbjct: 3 FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P I F I+ +N FD R R + + + Sbjct: 57 PDMVQNQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPSYQVID 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGI 146 + + Sbjct: 114 TVKHHGSFTKVTESSSGYSQCC 135 >gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a] Length = 177 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 28/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + A V + + + D + + GI Sbjct: 2 NFVAIDFET--ANPKRYSACSLALTVV-KNNQIADQFYSL---IKPDTDFSWRNIQVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ E I FF+ N +I +N FD +D Sbjct: 56 TEKQVQNAP-SFPELWPHIQNFFTPNN--LIVAHNASFDSSVLLRT---------LEHYD 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD +R F D KL + I+ + H+A D A Sbjct: 104 ITLPHYQLLDTLRTSKKFFKDLEN----------HKLDTICNNLNIDLKHHHNALFDSTA 153 Query: 184 TLALVWLIRE 193 ++ Sbjct: 154 CAEILLYQAN 163 >gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA polymerase III [Segniliparus rotundus DSM 44985] gi|296179940|gb|ADG96846.1| Exonuclease RNase T and DNA polymerase III [Segniliparus rotundus DSM 44985] Length = 202 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 12/155 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D E G D+ + A + D + I+ +D L + Sbjct: 5 KDRLLWVDCEMTGLRPGFDQLIEIAALVTDGELNIIDDGIDLVIHAEEDKLAQMDEYVTN 64 Query: 62 -----GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G+T + + AE + + F P T I+ N+I D + Sbjct: 65 MHASSGLT-EAVRASELSLAEAEERVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPE 123 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 D++ S L + + Sbjct: 124 --LDAWLHYRMVDVSTIKELSRRWYPRIYFNQPEK 156 >gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813] Length = 821 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 39/241 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 8 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 57 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ ++ + + I+Q CI +N++FD + ++ Sbjct: 58 HLTGITDKQLVKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGFE-- 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L LA + IE +AH A Sbjct: 112 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AD AT L ++ K L + + + L + + + F + Sbjct: 154 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 213 Query: 239 L 239 Sbjct: 214 W 214 >gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN 4207] gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN R506] gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN V2475] gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 4207] Length = 329 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA + HDA DV Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWRVPQQRPHDAFDDVRVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum NCTC 2916] gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum A2 str. Kyoto] gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum NCTC 2916] gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A2 str. Kyoto] Length = 195 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 10/197 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + Q D + E D + A I Sbjct: 1 MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAI 56 Query: 61 TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G + +K G + + I + I +N + + N + Sbjct: 57 HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114 Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + R P + D L+ + V HD Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKGAKKLFNCDDVGFHD 174 Query: 177 AKADVYATLALVWLIRE 193 A+ DV A ++ + + Sbjct: 175 ARYDVAALVSCYYRAKR 191 >gi|317493562|ref|ZP_07951983.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918505|gb|EFV39843.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 181 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 9/125 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFIT 61 + + D E G + +DR + A + D + V +D+ L D V Sbjct: 7 NLIWIDLEMTGLNPEVDRIIEIATLVTDANLNILAEGPVIAVHQSDEQLALMDEWNVRTH 66 Query: 62 ---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G+ ++ EA +++ +F I N++ D + Sbjct: 67 TGSGL-VERVKASTFDEATAAQKTIEFLQQWVPAGVSPICGNSVGQDRRFLFRYMPELEQ 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|21957334|gb|AAM84211.1|AE013664_6 hypothetical protein y0623 [Yersinia pestis KIM 10] gi|45435231|gb|AAS60791.1| Oligoribonuclease (3'->5' exoribonuclease) [Yersinia pestis biovar Microtus str. 91001] Length = 230 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V + + L D V Sbjct: 54 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 113 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 114 THTGSGL-VERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 172 Query: 114 FYDSYRW 120 + Sbjct: 173 EAYFHYR 179 >gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA] gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA] gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846] Length = 229 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M LA + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|303240250|ref|ZP_07326769.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] gi|302592160|gb|EFL61889.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] Length = 211 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 25/209 (11%) Query: 4 HFVIYDYETFGR---DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++IYD E + + + +++D ++I++ + F KP P Sbjct: 2 NYIIYDLELNSKPFKSKLPNEIIEIGAIKLDSDLKEIDTFQAFI-KPHYFKKLFPVVKRK 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT + E ++ + I ++ + + Sbjct: 61 TKITQEDVNNA-ESFKEIISSFRKWIGDNSILISWGHDDVHHLLVNCKN--------NKI 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179 + DL + +IY + L++ I+ + H A A Sbjct: 112 TTSWLKKNIDLQKQVSSIY-----------EVPAGQRYSLENAINVLEIDVGESFHRALA 160 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208 D T + ++ + + K Sbjct: 161 DARYTAQIFSKTFDRLDLSVFNSLEVKKK 189 >gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae COH1] gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae COH1] Length = 835 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 39/241 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ ++ + + I+Q CI +N++FD + ++ Sbjct: 72 HLTGITDKQLVKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGFE-- 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L LA + IE +AH A Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 AD AT L ++ K L + + + L + + + F + Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227 Query: 239 L 239 Sbjct: 228 W 228 >gi|218708317|ref|YP_002415938.1| oligoribonuclease [Vibrio splendidus LGP32] gi|218321336|emb|CAV17286.1| Oligoribonuclease [Vibrio splendidus LGP32] Length = 181 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P + E T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65 Query: 62 GITPQKAL---RDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 V E + ++ +F I N+I D + Sbjct: 66 HTGSGLVKRIQDSTVSEQDAIQQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|315604595|ref|ZP_07879658.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310] gi|315313607|gb|EFU61661.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310] Length = 213 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 24/126 (19%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + + D E G DVA D + A V D ++ P D L P A + Sbjct: 7 LKDPLIWIDCEMTGLDVANDALIEVAVVVTDGDLSIVD--------PGMDVLITPPACAL 58 Query: 61 TGITP------------QKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDY 104 + + R GV E + + I +F P ++ N++ D Sbjct: 59 ENMNDFVRNMHTSSGLLTELARSGVSMEEATEQVLSYIKRFVPQPGKALLAGNSVGTDKM 118 Query: 105 YSRNIF 110 + Sbjct: 119 FLEANM 124 >gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia insecticola CARI] gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia insecticola CARI] Length = 222 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 27/202 (13%) Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +I D ET G +V DR + A +++ + + + F + + +A+ I Sbjct: 1 MKKEIILDIETTGLNVKKGDRIIEIACIKI---LNRKITNKKFHEYINPNRKSNKDALKI 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + ++ F I +N FD + F Y +++ Sbjct: 58 HGISDKFLKNKP-FFKDIIDKLINFIKNYTIII---HNSSFDISFLNKEFKILKYKKFKY 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178 N D ++ + L L I H+A Sbjct: 114 YVKN-----------------IVDSLKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNAL 156 Query: 179 ADVYATLALVWLIREKKPKLFE 200 D + ++ K+ +F Sbjct: 157 LDCILLSKIYLILIRKQKNIFY 178 >gi|300824605|ref|ZP_07104714.1| exonuclease [Escherichia coli MS 119-7] gi|300522930|gb|EFK43999.1| exonuclease [Escherichia coli MS 119-7] Length = 282 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 50/191 (26%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 D ET G D + D + + F + +A + GI+ Sbjct: 105 FFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A AD Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGLAHSAIADARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|183985996|gb|AAI66309.1| LOC100158598 protein [Xenopus (Silurana) tropicalis] Length = 273 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D + A + D + + K D+ L Sbjct: 71 MGQRMVWVDLEMTGLDIEKDHIIEMACLITDSDLDILAEGPNLIIKQPDELLDGMSDWCK 130 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + Q + + F P C + N++ D + + Sbjct: 131 EHHGKSGLTQAVRESKITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPQF 190 Query: 114 FYDSYRW 120 + Sbjct: 191 MRHLHYR 197 >gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 232 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1] gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1] Length = 222 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D I+ T F +P + +PEA+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + I + S + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 S + + +D + + L + GI N A Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I + Sbjct: 181 HSALYDTERTAELFCYIVNR 200 >gi|319787041|ref|YP_004146516.1| exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas suwonensis 11-1] gi|317465553|gb|ADV27285.1| Exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas suwonensis 11-1] Length = 189 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 13/129 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A V D Q + L EA+ Sbjct: 7 MDRLIWIDLEMTGLDTDRDSILEIATVVTDAQLNVLAEGPELAISHPLQVL---EAMDDW 63 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 G + Q+ L V A+ R F + + N+I D + + Sbjct: 64 NRNQHGRSGLWQRVLDSDVTLAQAEARTVAFLNEWVPAKASPMCGNSICQDRRFLHRLMP 123 Query: 112 RNFYDSYRW 120 R + Sbjct: 124 RLEQYFHYR 132 >gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1] gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1] Length = 231 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 26/203 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + +DR V + + + A I IT Sbjct: 2 LIFLDVETTGLE-EIDRVCSIGIVWSED-----GENRTIYELVNEGKKIPSLASSINHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + +T I+G+N + Sbjct: 56 NEMLKGKPKFQESEAYKLLTQHNNEDTTIVGHNIKFDLAMLKK---------------SG 100 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 N +++D +R + Q+ + + + E + AH A +D Sbjct: 101 FNFIGEIIDTLRVTKHLVSECEQFSLQF-----LRYELKLYKEEKELLQAHHALSDATIA 155 Query: 185 LALVWLIREKKPKLFEYLYDYRN 207 L + E +PK + N Sbjct: 156 KNLYEYLLEIQPKEKLAKLSFEN 178 >gi|187777769|ref|ZP_02994242.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC 15579] gi|187774697|gb|EDU38499.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC 15579] Length = 286 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 34/233 (14%) Query: 4 HFVIYDYETFGRD----------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKP 47 +++I+D E D + ++++ + E ++S V + KP Sbjct: 2 NYIIFDLEWNSFRNVKNHINYYKKFNKKTRFFDEIIEIGAMKLNDELECVDSFRV-YIKP 60 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 +P + +TGI + +F + + F I + D + Sbjct: 61 TIYKELNPRIIELTGINNEDLKYG----FDFKKALKHFKEWIGKDYILCSWCDSDIKVLK 116 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 + S+ Y S ++ S Sbjct: 117 KNIEYYNPNYKVESFLVPYIDIQKYCCEILEYGRRVSLHDIISTENIVPS---------- 166 Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 H A D T+ + + K + D + L +M Sbjct: 167 ---TDTFHQALDDSKLTVDVFRKMFHKCKIENYIINDLDSFYDSLDLKVSFDM 216 >gi|55823505|ref|YP_141946.1| DNA polymerase III subunit epsilon [Streptococcus thermophilus CNRZ1066] gi|55739490|gb|AAV63131.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus CNRZ1066] Length = 196 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E F + Q + V++ + ++++ + F + +TG Sbjct: 5 ETYIAFDLE-FNTVDGVSHIIQVSAVKMGQH-KEVDQYDSF---VYSNVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E+ F NT +IGYN ++ D N + Y Sbjct: 60 ITADKIAKAPKLES-VLAEFKAFI--GNTPLIGYNALKSDLPI-LAENGLNLEEQYA--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ D A +GI + KL +A GI+ + H++ D Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAQIYKKFLELDEN 171 >gi|159036666|ref|YP_001535919.1| oligoribonuclease [Salinispora arenicola CNS-205] gi|157915501|gb|ABV96928.1| Exonuclease RNase T and DNA polymerase III [Salinispora arenicola CNS-205] Length = 196 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 14/157 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEA 57 M + V D E G D+ D+ + A + D + + D +P+ A Sbjct: 1 MADLLVWIDCEMTGLDLGSDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVA 60 Query: 58 VFIT---GITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYSRNIF 110 G+T ++ R V AE I + P T + N+I D + Sbjct: 61 TM-HAKSGLT-EEVRRSTVGLAEAEDLILDYVTSHVKDPRTAPLCGNSIATDRGFIARDM 118 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 R D++ S L + + Sbjct: 119 PR--LDNHLHYRMIDVSSIKELCRRWYPRVYFSQPQK 153 >gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021] gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655] gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021] gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021] gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655] gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21] Length = 229 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M LA + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|145600855|ref|YP_001164931.1| oligoribonuclease [Yersinia pestis Pestoides F] gi|108777113|gb|ABG19632.1| oligoribonuclease [Yersinia pestis Nepal516] gi|108781821|gb|ABG15879.1| oligoribonuclease [Yersinia pestis Antiqua] gi|145212551|gb|ABP41958.1| oligoribonuclease [Yersinia pestis Pestoides F] Length = 227 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V + + L D V Sbjct: 51 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 110 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 111 THTGSGL-VERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 169 Query: 114 FYDSYRW 120 + Sbjct: 170 EAYFHYR 176 >gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] Length = 229 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 53/198 (26%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L M A + AH Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAELFCYMVNH 203 >gi|291619097|ref|YP_003521839.1| Orn [Pantoea ananatis LMG 20103] gi|291154127|gb|ADD78711.1| Orn [Pantoea ananatis LMG 20103] gi|327395429|dbj|BAK12851.1| oligoribonuclease Orn [Pantoea ananatis AJ13355] Length = 194 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 19 NNLIWIDLEMTGLDPERDRIIEIATIVTDADLNILAE 55 >gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7] gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7] Length = 227 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 66/200 (33%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D I+ T F +P + + A+ G Sbjct: 19 VVIDVETAGFNKETDALLEIAVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFNG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E + I + +I +N FD + RN Sbjct: 79 IDPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERN--- 135 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + + + + +D + L A GIE N A Sbjct: 136 NIKRTPFHPFVSFDTTTLA----------------GLALGQTVLAKACRAAGIEFDNSQA 179 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L LI + Sbjct: 180 HSALYDTERTAELYCLIVNR 199 >gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] Length = 220 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 62/264 (23%), Gaps = 52/264 (19%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 LI + + + P + + FG R Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTTFTFGKYRGKAISDVAE-RD 191 Query: 247 PRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 192 PGYLRWLFNNLDSMSPELRLTLKH 215 >gi|171913521|ref|ZP_02928991.1| hypothetical protein VspiD_20115 [Verrucomicrobium spinosum DSM 4136] Length = 202 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 9/125 (7%) Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M++ ++ D ET G D + V + E V C+P D + + A+ Sbjct: 1 MSDEPRLLVTDLETTGLDGRACGIVEIGAVWMLGAGE-----FVMKCRPHADAVIEARAM 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + G E E + ++ I+ N R D ++ + R+ + Sbjct: 56 EVNGCDW-HLDPTVAAEVEALEQFVEWVG-AGPVILCGQNPRHDLWFLQEGAKRHGLELP 113 Query: 119 RWSWD 123 Sbjct: 114 FVHRT 118 >gi|260202912|ref|ZP_05770403.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis K85] gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] Length = 329 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G R A + +D +S P P + G+T Sbjct: 18 VIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 A+ + + + +N+ FD + + + Sbjct: 73 MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +++ R + + +L+ LA G+ HDA D Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169 Query: 187 LV 188 ++ Sbjct: 170 IL 171 >gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 511 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 28/199 (14%) Query: 5 FVIYDYETFGRDVALD------------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 ++I+D ET G + D R + + V +D + + I + + KP + Sbjct: 2 YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLI-ELKDYIIKPEGYEI 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 P + I GI+ + A+ G+ + N + +N+ FD F R Sbjct: 61 PF-NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSN--FLIGHNVFFDIKIVCAEFIR 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + +++ ++ + +WP+ L +L + Sbjct: 118 INKKISFFKKKIIDTKEISIN---YCAIKMGEKFKWPT---------LTELYKKLFNDTF 165 Query: 173 NAHDAKADVYATLALVWLI 191 AHD+K+DV AT + + Sbjct: 166 IAHDSKSDVLATTKCFFEL 184 >gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease [Agrobacterium vitis S4] gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease [Agrobacterium vitis S4] Length = 207 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 49/194 (25%), Gaps = 29/194 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + D+ET + V + + E +P + I Sbjct: 5 LQPKIIAIDFET--ANEERGSACSVGLAFV-ENGQVV-RVEERLIRPKTMR-FSSFNIAI 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI P G E FS ++ +N FD R Sbjct: 60 HGIRPDHVEDAGE-FPEVMDEFADDFS---GAMVVAHNAAFDLSVWRASCDLYRQPYPSL 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S+ + + WP S +L LA + H+A D Sbjct: 116 SY---------------VCSVKLAQKVWP----QLPSHRLNVLAAHLQLSF-RHHNAAED 155 Query: 181 VYATLALVWLIREK 194 V + E+ Sbjct: 156 ASVCAQAVIAMMER 169 >gi|70732988|ref|YP_262761.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68347287|gb|AAY94893.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 235 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 6/154 (3%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ D+ V + S + + P +V I G+ P Sbjct: 42 VVVDVETTGLNLNRDQVLSIGAVVI-EDGAIDFSQQFERTLQRQGHKLSP-SVLIHGLGP 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ G E + F + + FD + + + S+ + Sbjct: 100 S-AIAAGCDPVEA---LLDFMEFVGDSPLLAFHAPFDQHMLGRALKDSLGYRLQHSFLDV 155 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 LL I D Sbjct: 156 ADMAPLLCPQAQIREAGLDDWVRWFNLQVVERHN 189 >gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25] gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25] Length = 214 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D ST F +P + + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ + + I+ +N FD + R Sbjct: 80 IRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201 >gi|261254064|ref|ZP_05946637.1| oligoribonuclease [Vibrio orientalis CIP 102891] gi|260937455|gb|EEX93444.1| oligoribonuclease [Vibrio orientalis CIP 102891] Length = 181 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P + E T Sbjct: 6 QNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQPDAELKKMDEWCTTT 65 Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + + E E R+ +F I N++ D + Sbjct: 66 HTGSGLVDRVRKSNIDEQEAVRQTIEFLEKWVPKGKSPICGNSVGQDRRFLYKHMAELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|71066107|ref|YP_264834.1| oligoribonuclease [Psychrobacter arcticus 273-4] gi|71039092|gb|AAZ19400.1| putative oligoribonuclease protein [Psychrobacter arcticus 273-4] Length = 195 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 V D E G D D + A V D + VF K +D L D Sbjct: 17 KKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDRKLNGMDDWNTK 76 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + R V AE +F + + N+I D + Sbjct: 77 QHGQSGLVDRVRRSTVTLAEAEAETLKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELE 136 Query: 115 YDSYRW 120 + Sbjct: 137 KFFHYR 142 >gi|325917515|ref|ZP_08179720.1| RNAse T [Xanthomonas vesicatoria ATCC 35937] gi|325536273|gb|EGD08064.1| RNAse T [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 58/211 (27%), Gaps = 39/211 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52 M+ F V+ D ET G D + A V + D T PA Sbjct: 18 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDADGRFFPGETASAHLVPAPGLE 77 Query: 53 PDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRFD 102 DP+++ ITGI L A+ + I+ +N FD Sbjct: 78 IDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFD 133 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + R + + S +D + + Y G T Sbjct: 134 LNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAA 176 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 177 QAAGLDWNAADAHSAVYDTEQTARLFCTIAN 207 >gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] Length = 186 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 32/195 (16%) Query: 1 MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +++ D+ET G +++ A V V R + E D + Sbjct: 1 MM-NYIAIDFETATG---SMNSACSVATVEV-RDGQLKEGWTTLI--QPPGLRFDSFNIG 53 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GI+P+ AE + + + I+ +N FD + N Sbjct: 54 IHGISPKDVTDAP-TFAEVWEELKERLA---GKIVVAHNASFDMGVLKASLLAN------ 103 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + +R WP+ DD KL + I H A Sbjct: 104 ---RLQAPYFRTCCTVRIARKV------WPALDD----HKLNTVGAHLNINF-RHHRALD 149 Query: 180 DVYATLALVWLIREK 194 D A++ + Sbjct: 150 DARTCAAILLFAGME 164 >gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185] gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185] Length = 202 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 32/195 (16%) Query: 1 MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M +++ D+ET G +++ A V V R + E D + Sbjct: 17 MM-NYIAIDFETATG---SMNSACSVATVEV-RDGQLKEGWTTLI--QPPGLRFDSFNIG 69 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I GI+P+ AE + + + I+ +N FD + N Sbjct: 70 IHGISPKDVTDAP-TFAEVWEELKERLA---GKIVVAHNASFDMGVLKASLLAN------ 119 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + +R WP+ DD KL + I H A Sbjct: 120 ---RLQAPYFRTCCTVRIARKV------WPALDD----HKLNTVGAHLNINF-RHHRALD 165 Query: 180 DVYATLALVWLIREK 194 D A++ + Sbjct: 166 DARTCAAILLFAGME 180 >gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans ATCC 49185] gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185] gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185] Length = 190 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 23/197 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G + Q +G+ V + +E FF KP + + +A+ + G Sbjct: 2 KILFIDTETGGLNPKESALIQLSGI-VRIDKKDVEEFN-FFIKPFAESEVNAKALEVQGR 59 Query: 64 TPQKALRDGV-VEAEFSRRIHQFFSV--------PNTCIIGYNNIRFDDYYSRNIFYRNF 114 T ++ + E E + + GYN D Sbjct: 60 TEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVKFDIDMLQSFFKRNGD 119 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + + + + +++ + KL+ GI A Sbjct: 120 NFLFSYISSSVLDPLPCIGMLQLCEVL-----------PELKNNKLETWCEYFGIGF-KA 167 Query: 175 HDAKADVYATLALVWLI 191 HD+ D+ AT L++ I Sbjct: 168 HDSLEDIKATKELIFKI 184 >gi|237785970|ref|YP_002906675.1| oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385] gi|237758882|gb|ACR18132.1| putative oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385] Length = 222 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 8/127 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + + A + D ++ DD L D + Sbjct: 23 DRIVWIDCEMTGLDPSTHVLVEIAAIVTDANLNILDEGLDIVIHATDDELAKMDDFVTQM 82 Query: 61 T---GITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T + G E E + ++ + P T + N+I D + + Sbjct: 83 HTKNGLTDEIRKSTVSVGEAENEVLDYVKKWVNAPRTAPLAGNSIASDRKFIAAYMPKLD 142 Query: 115 YDSYRWS 121 + Sbjct: 143 EFLHYRM 149 >gi|218190704|gb|EEC73131.1| hypothetical protein OsI_07145 [Oryza sativa Indica Group] Length = 247 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 41/201 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G DVA DR + A + D + I + + Sbjct: 68 LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 127 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 A +T Q+ L+ + E + ++ F + +I N++ D + + Sbjct: 128 ASGLT----QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLK------ 177 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++DV + + R Sbjct: 178 ----NYMPQLAAIFSHVIVDVSSIMALCIRWYPKERKRTPQK----------------GK 217 Query: 174 AHDAKADVYATLALVWLIREK 194 H A D+ ++A + ++ Sbjct: 218 KHRAMNDIKESIAELKYYKDN 238 >gi|152985597|ref|YP_001350999.1| oligoribonuclease [Pseudomonas aeruginosa PA7] gi|166216274|sp|A6VD64|ORN_PSEA7 RecName: Full=Oligoribonuclease gi|150960755|gb|ABR82780.1| oligoribonuclease [Pseudomonas aeruginosa PA7] Length = 180 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + V ++ L D Sbjct: 4 PQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEVLAGMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + F I N+I D + R Sbjct: 64 QHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMPRLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 GYFHYR 129 >gi|15600144|ref|NP_253638.1| oligoribonuclease [Pseudomonas aeruginosa PAO1] gi|107104050|ref|ZP_01367968.1| hypothetical protein PaerPA_01005123 [Pseudomonas aeruginosa PACS2] gi|116053100|ref|YP_793419.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14] gi|218894046|ref|YP_002442915.1| oligoribonuclease [Pseudomonas aeruginosa LESB58] gi|254238334|ref|ZP_04931657.1| oligoribonuclease [Pseudomonas aeruginosa C3719] gi|254244161|ref|ZP_04937483.1| oligoribonuclease [Pseudomonas aeruginosa 2192] gi|296391791|ref|ZP_06881266.1| oligoribonuclease [Pseudomonas aeruginosa PAb1] gi|313109953|ref|ZP_07795880.1| oligoribonuclease [Pseudomonas aeruginosa 39016] gi|11386963|sp|P57665|ORN_PSEAE RecName: Full=Oligoribonuclease gi|122256887|sp|Q02F67|ORN_PSEAB RecName: Full=Oligoribonuclease gi|9951232|gb|AAG08336.1|AE004908_2 oligoribonuclease [Pseudomonas aeruginosa PAO1] gi|115588321|gb|ABJ14336.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14] gi|126170265|gb|EAZ55776.1| oligoribonuclease [Pseudomonas aeruginosa C3719] gi|126197539|gb|EAZ61602.1| oligoribonuclease [Pseudomonas aeruginosa 2192] gi|218774274|emb|CAW30091.1| oligoribonuclease [Pseudomonas aeruginosa LESB58] gi|310882382|gb|EFQ40976.1| oligoribonuclease [Pseudomonas aeruginosa 39016] Length = 180 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + V ++ L D Sbjct: 4 PQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEILAGMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + F I N+I D + R Sbjct: 64 QHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMPRLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 GYFHYR 129 >gi|326385272|ref|ZP_08206935.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL B-59395] gi|326196015|gb|EGD53226.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL B-59395] Length = 236 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 34/210 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLP- 53 MT+ +V D ET G + P + V + + F D + Sbjct: 1 MTHRYVALDLETTGLNTLTACPLEIGAVEILENDPRGPYGRVLG-----FVPHTPDAVLH 55 Query: 54 --DPEAVFITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 P+A+ + ++ A+ + + ++G N Sbjct: 56 KASPDALAVNRFYERRLYAAMLRPAETADMMLELVELLR--GATLVGANVAYDAAILW-- 111 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + F D W + R +++ + D S + Sbjct: 112 AWLATFTDDETPPW---HFRLYDVELATEVAL----------NLDRTPSLRSSCELWNVD 158 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198 + AH A D Y + +R Sbjct: 159 TDRDAAHTALGDAYMAADVFLAVRAHCRGD 188 >gi|89071984|ref|ZP_01158580.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34] gi|89052085|gb|EAR57536.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34] Length = 186 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 8/126 (6%) Query: 3 NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + V +D E GR + +D KI + +PA D + P Sbjct: 4 DRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEI-SPFCT 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI P+ ++G + + I Q F + + DD + Sbjct: 63 ELTGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAW---GHDDRILKKECLAKELKVP 119 Query: 119 RWSWDN 124 + N Sbjct: 120 FREYLN 125 >gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 232 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N F R W Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 LI + + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|148380237|ref|YP_001254778.1| exonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153931193|ref|YP_001384542.1| exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153935233|ref|YP_001388058.1| exonuclease family protein [Clostridium botulinum A str. Hall] gi|148289721|emb|CAL83826.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] gi|152927237|gb|ABS32737.1| exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152931147|gb|ABS36646.1| exonuclease family protein [Clostridium botulinum A str. Hall] Length = 253 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 30/207 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++I+D E + + Q ++++ + I++ KP + Sbjct: 2 SYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + + + ++Y+ Sbjct: 58 PFVKNLTNLTMDSLNKA-KSFREVYKDFLEFLNKDRNIFCIWGMTDMKELFRNIVYYQLD 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S + N + A++ + +P + S ++ L + ++ + Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H+A D + T + I +K K Y Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187 >gi|115446061|ref|NP_001046810.1| Os02g0465500 [Oryza sativa Japonica Group] gi|47496882|dbj|BAD19846.1| putative oligoribonuclease [Oryza sativa Japonica Group] gi|47497504|dbj|BAD19557.1| putative oligoribonuclease [Oryza sativa Japonica Group] gi|113536341|dbj|BAF08724.1| Os02g0465500 [Oryza sativa Japonica Group] gi|215687346|dbj|BAG91911.1| unnamed protein product [Oryza sativa Japonica Group] Length = 247 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 41/201 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G DVA DR + A + D + I + + Sbjct: 68 LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 127 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 A +T Q+ L+ + E + ++ F + +I N++ D + + Sbjct: 128 ASGLT----QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLK------ 177 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++DV + + R Sbjct: 178 ----NYMPQLAAIFSHVIVDVSSIMALCIRWYPKERKRTPQK----------------GK 217 Query: 174 AHDAKADVYATLALVWLIREK 194 H A D+ ++A + + Sbjct: 218 KHRAMNDIKESIAELKYYEDN 238 >gi|312278915|gb|ADQ63572.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus ND03] Length = 196 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E F + Q + V++ + ++++ + F + +TG Sbjct: 5 ETYIAFDLE-FNTVDGVSHIIQVSAVKMGQH-KEVDQFDSFVYS---NVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E+ F NT +IGYN ++ D N + Y Sbjct: 60 ITADKIAKAPKLES-VLAEFKAFI--GNTPLIGYNALKSDLPI-LAENGLNLEEQYA--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ D A +GI + KL +A GI+ + H++ D Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAQIYEKFLELDEN 171 >gi|291327132|ref|ZP_06127108.2| oligoribonuclease [Providencia rettgeri DSM 1131] gi|291311676|gb|EFE52129.1| oligoribonuclease [Providencia rettgeri DSM 1131] Length = 187 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 9/171 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N+ + D E G D DR + A + D + V D+ L + + Sbjct: 12 NNLIWIDLEMTGLDPVRDRIIEIATIVTDSHLNILAEGPVIAVHQTDEQLALMDEWNVNT 71 Query: 63 ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 T ++ + V E E F I N++ D + N Y Sbjct: 72 HTNSGLVERVRKSTVSEREAELATIAFLEKWVPQGASPICGNSVGQDRRFLFN--YMPEL 129 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 +SY S L + + + + +LA Sbjct: 130 ESYFHYRYLDVSTLKELARRWKPEILAGFTKKNTHQALDDIRESVAELAYY 180 >gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952] gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952] Length = 177 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + A V V R + + + + I GI Sbjct: 2 NFIAMDFET--ANHQRHSACSLALVMV-RDSKIVGEYYSL---IQPETSFFWRNIQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 PQ E I Q+F+ P + II +N + + + Y N + + Sbjct: 56 KPQDVKTAPK-FPEVWESIAQYFN-PYSLIIAHNAPFDNGVLAGCLDYYNLEQPHYLT-- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 LD +R F + + +L + I +N HDA D A Sbjct: 112 --------LDTVRTSRKFYQNL----------PNHRLNTVCGYLDIPLLNHHDALEDSRA 153 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 154 CAEILLAQEKE 164 >gi|227113804|ref|ZP_03827460.1| oligoribonuclease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227326226|ref|ZP_03830250.1| oligoribonuclease [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 180 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 44/171 (25%), Gaps = 9/171 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G + DR + A + D + V +D L D V Sbjct: 5 NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVMAVHQSDSQLALMDDWNVRT 64 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + E F I N+I D + Y Sbjct: 65 HGASGLTDRVKASTTDERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFR--YMPEL 122 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 ++Y S L + Q + L +LA Sbjct: 123 EAYFHYRYLDVSTLKELARRWKPEILTGFKKQGTHQAMDDIRESLAELAYY 173 >gi|170717217|ref|YP_001784337.1| oligoribonuclease [Haemophilus somnus 2336] gi|168825346|gb|ACA30717.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus 2336] Length = 184 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + + + + Sbjct: 5 KQNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAEGPVLAIHQSNELLNNMNEWCVK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 + G+ ++ + E + F I N++ D + N Sbjct: 65 THTS---NGL-IERVKNSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFLINYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PELAEYFHYRH 131 >gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)] Length = 268 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 36/228 (15%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYL 52 M + F V+ D ET G D D + A + +D Q + I P + Sbjct: 54 MVDRFRKFLPVVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGAN 113 Query: 53 PDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDY 104 + A+ TGI P +R + E E RRI + CI+ +N FD Sbjct: 114 LEQRALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLS 173 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 + R N ++ +LD + + L Sbjct: 174 FLNAAIERTN-----SKNHNPFHQFSVLDTVTLSALAFGQTV-------------LARAC 215 Query: 165 LANGIEH--VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 A GIE AH A D T L I P L L + N+ Sbjct: 216 KAAGIEFSGTEAHSALYDTQKTAELFCHILNSYPMLTNALLEDNTANE 263 >gi|156376678|ref|XP_001630486.1| predicted protein [Nematostella vectensis] gi|156217508|gb|EDO38423.1| predicted protein [Nematostella vectensis] Length = 201 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 25/197 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----------EKIESTEVFFCKPADDYL 52 F+ D ET G + + V + I+ Sbjct: 1 TFIFLDLETTGLR-RPIEITEICLIAVQKDHLLRAAETKTEPRLIDK---LSICVKPVQN 56 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIF 110 + A ITGI + + ++ I F +C++ ++ RFD + F Sbjct: 57 IECGASSITGINKMDLAEKREFDRKLAKVIKTFLRRQPSPSCLVAHSGDRFDFDILASEF 116 Query: 111 YRNFYDSY-----RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 SW ++ + + P G SF L +L Sbjct: 117 VNAGVKFPSEIQAADSWKAFRKLHQAEELKTSEAKRTTRTKLAPYT--GRLSFSLGNLYK 174 Query: 166 AN-GIEHVNAHDAKADV 181 G E N+H A+ D Sbjct: 175 RMTGSEIENSHTAEGDT 191 >gi|256832848|ref|YP_003161575.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM 20603] gi|256686379|gb|ACV09272.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM 20603] Length = 298 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 39/146 (26%), Gaps = 17/146 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + D ET G DR + A V D E + A I Sbjct: 1 MTGYAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETL---INPQR--NLTAQHIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + A+ + + + + +N FD + +R Sbjct: 56 HIHASHIQHAPL-FADIATDLLTLL---DGRVPVAHNAPFDARFLAAELHRTG------- 104 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQ 147 + + D L M + P + Sbjct: 105 -KTLHQQHDFLCTMNLSRRYLPGVGK 129 >gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardia sp. P1] Length = 213 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 43/153 (28%), Gaps = 16/153 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-------DDYLP 53 MT+ V D E G D+ D + A + D + D + Sbjct: 1 MTDRLVWIDCEMTGLDLGSDALIEIAALVTDGDLNVLGEGVDVVIACDDAQLDAMPDVVR 60 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS----VPNTCIIGYNNIRFDDYYSRNI 109 D A G+T ++ V AE R+ + T + N+I D + Sbjct: 61 DMHARS--GLT-EEVRAATVTIAEAEERVLAYIRAHVPDARTAPLAGNSIATDRGFLARD 117 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D+Y S L F Sbjct: 118 MQE--LDAYLHYRMIDVSSVKELARRWFPRVFY 148 >gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1] gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1] Length = 220 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 65/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V + + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDI-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|329295775|ref|ZP_08253111.1| Orn [Plautia stali symbiont] Length = 182 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 7 NNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAE 43 >gi|260942501|ref|XP_002615549.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720] gi|238850839|gb|EEQ40303.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720] Length = 283 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 10/128 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAVF 59 V D E G D+A D + + D I+ + + V Sbjct: 33 KPLVWIDCEMTGLDIAKDHIIEICCIITDGNLNIIDEKGYESTVYVPKKVLDSMNEWCVN 92 Query: 60 ITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G + K L + V+ E I + P T ++ N++ D ++ F + Sbjct: 93 QHGKSGLTAKVLANPQQTLAKVQQELLDYIQFYIPEPRTSLLAGNSVHMDKFFMMKEFPQ 152 Query: 113 NFYDSYRW 120 + Sbjct: 153 VIDHLHYR 160 >gi|15640368|ref|NP_229995.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591589|ref|ZP_01678842.1| oligoribonuclease [Vibrio cholerae 2740-80] gi|121730775|ref|ZP_01682865.1| oligoribonuclease [Vibrio cholerae V52] gi|147673115|ref|YP_001218609.1| oligoribonuclease [Vibrio cholerae O395] gi|227080553|ref|YP_002809104.1| oligoribonuclease [Vibrio cholerae M66-2] gi|229506863|ref|ZP_04396371.1| oligoribonuclease [Vibrio cholerae BX 330286] gi|229508668|ref|ZP_04398162.1| oligoribonuclease [Vibrio cholerae B33] gi|229516050|ref|ZP_04405501.1| oligoribonuclease [Vibrio cholerae RC9] gi|229606377|ref|YP_002877025.1| oligoribonuclease [Vibrio cholerae MJ-1236] gi|254851651|ref|ZP_05241001.1| oligoribonuclease [Vibrio cholerae MO10] gi|255747141|ref|ZP_05421084.1| oligoribonuclease [Vibrio cholera CIRS 101] gi|262149017|ref|ZP_06028162.1| oligoribonuclease [Vibrio cholerae INDRE 91/1] gi|262166933|ref|ZP_06034653.1| oligoribonuclease [Vibrio cholerae RC27] gi|298501303|ref|ZP_07011100.1| oligoribonuclease [Vibrio cholerae MAK 757] gi|11133789|sp|Q9KV17|ORN_VIBCH RecName: Full=Oligoribonuclease gi|172047716|sp|A5F3M7|ORN_VIBC3 RecName: Full=Oligoribonuclease gi|9654757|gb|AAF93514.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546555|gb|EAX56757.1| oligoribonuclease [Vibrio cholerae 2740-80] gi|121627652|gb|EAX60322.1| oligoribonuclease [Vibrio cholerae V52] gi|146314998|gb|ABQ19537.1| oligoribonuclease [Vibrio cholerae O395] gi|227008441|gb|ACP04653.1| oligoribonuclease [Vibrio cholerae M66-2] gi|227012197|gb|ACP08407.1| oligoribonuclease [Vibrio cholerae O395] gi|229346953|gb|EEO11920.1| oligoribonuclease [Vibrio cholerae RC9] gi|229354303|gb|EEO19232.1| oligoribonuclease [Vibrio cholerae B33] gi|229355968|gb|EEO20887.1| oligoribonuclease [Vibrio cholerae BX 330286] gi|229369032|gb|ACQ59455.1| oligoribonuclease [Vibrio cholerae MJ-1236] gi|254847356|gb|EET25770.1| oligoribonuclease [Vibrio cholerae MO10] gi|255735190|gb|EET90592.1| oligoribonuclease [Vibrio cholera CIRS 101] gi|262024638|gb|EEY43319.1| oligoribonuclease [Vibrio cholerae RC27] gi|262031207|gb|EEY49826.1| oligoribonuclease [Vibrio cholerae INDRE 91/1] gi|297539994|gb|EFH76058.1| oligoribonuclease [Vibrio cholerae MAK 757] Length = 181 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + V E E + F I N+I D + Sbjct: 66 HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|169752556|gb|ACA70074.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186696803|gb|ACC87432.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 227 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V + + L D V Sbjct: 51 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 110 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 111 THTGSGL-VERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 169 Query: 114 FYDSYRW 120 + Sbjct: 170 EAYFHYR 176 >gi|89094643|ref|ZP_01167580.1| oligoribonuclease [Oceanospirillum sp. MED92] gi|89081113|gb|EAR60348.1| oligoribonuclease [Oceanospirillum sp. MED92] Length = 186 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 7/114 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ + D E G + A D + A + D + +D+ + D Sbjct: 9 KNNLIWIDLEMTGLEPATDVIIEIATIVTDSDLNVLAEGPTLAIHQSDEIMDNMDEWCTN 68 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108 G + Q+ V EAE + +F + N+I D + Sbjct: 69 QHGKSGLTQRVKESTVTEAEAEQATIEFLKQYVEAGVSPMCGNSIGQDRRFLDK 122 >gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 303 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 64/212 (30%), Gaps = 29/212 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET D P + V + + I++ + + KP D D + I GI Sbjct: 3 FVTIDFET--ATAQRDSPCEIGLTFV-QDGQIIDT-KSWLIKPMYDE-FDYFNILIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ E I + +N FD R ++ Sbjct: 58 PEHVADKPE-FNELWSEIKPLVENK---FLIAHNAGFDISVLRRTLEAYQLPFPTLNYS- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 Y FS Q G ++ L+ L N I H A AD AT Sbjct: 113 ------------CSYIFSKKVWQ------GLPAYDLKTLCKVNNINL-KHHRAGADSKAT 153 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 L E + + K + +L + Sbjct: 154 AELTLKAFEIAGVSSIDDFPEKLKTTVGQLYN 185 >gi|254393010|ref|ZP_05008173.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064] gi|294812789|ref|ZP_06771432.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064] gi|326441260|ref|ZP_08215994.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064] gi|197706660|gb|EDY52472.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064] gi|294325388|gb|EFG07031.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064] Length = 200 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G + D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALATMPEVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + +AE I + P + N++ D + Sbjct: 61 QMHTASGLLDELAGGTTLADAEERVLAYIREHVREPGKAPLCGNSVGTDRGFLSR----- 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N E Sbjct: 116 --DMPALESWLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKSG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIRESIAELRYYRE 174 >gi|269793338|ref|YP_003318242.1| Exonuclease RNase T and DNA polymerase III [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100973|gb|ACZ19960.1| Exonuclease RNase T and DNA polymerase III [Thermanaerovibrio acidaminovorans DSM 6589] Length = 280 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 28/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET + + P V V + WE +E D +P V + GIT Sbjct: 3 FAAIDFET--ANRFHESPCAVGVVVVRQ-WEIVEEASFLILPHRDFRFFEPMNVRVHGIT 59 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P++ L EF + S+ + +N RFD + Sbjct: 60 PRRVLSSP----EFPDALEDVISMVQGLPLMAHNARFDLEVLMRTMAL---------YSL 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G +R+D + +R L+ +A G N HD D Sbjct: 107 GEARFDWVCSLRLARRAFRLRRC-----------GLESMAEHLGFPF-NHHDPLDDARLC 154 Query: 185 LALV 188 + Sbjct: 155 AKVA 158 >gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831] gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 195 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 30/195 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + + V + E I+ A VFI Sbjct: 1 MVKFAAIDFET--ANEKRNSACSVG-VVIMNDTEIIDEFYTLINPLASFRS---GNVFIH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ AE + + I+ +N FD R + ++ Sbjct: 55 GITEEQVQEAP-TFAELWPTLSAYLED---TILIAHNASFDMSVLRQSLNKYDIPCPNYT 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L ++ P KL +A +GI N H A D Sbjct: 111 S---------LCTVKISRLIWPQLEN----------HKLHTVANHHGIAL-NHHHAMDDA 150 Query: 182 YATLALVWLIREKKP 196 A+ + ++ Sbjct: 151 RASAKIFLASLAEQK 165 >gi|296236689|ref|XP_002763437.1| PREDICTED: three prime repair exonuclease 2-like [Callithrix jacchus] Length = 278 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 63/217 (29%), Gaps = 34/217 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 50 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPERDESGAPVLPRVLDKLTLCMC-- 107 Query: 48 ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + + G + R + F S C++ +N +D Sbjct: 108 -PERPFTAKASEITGLSSEGLVRCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 165 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + +R G + L Sbjct: 166 FPLLCAELQRLGARLPRDT-----VCLDTLPALRG----LDHAHRHGTRARGRQGYSLGS 216 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 L E AH A+ DV+ L + + Sbjct: 217 LFHRYFQAEPSAAHSAEGDVHTLLLIFLHRATELLTW 253 >gi|290473715|ref|YP_003466589.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004] gi|289173022|emb|CBJ79795.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004] Length = 245 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 64/252 (25%), Gaps = 36/252 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + VI D ET G + ++ + P+A I Sbjct: 17 LKEDIVILDTETTGLKSDDEIIE---ISIINADGNVL-----LDTLIKPQKKIPPDATRI 68 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT + + ++ ++ + ++ YN + Sbjct: 69 HRITNEDVQHKPL-WSDVYKKYREIVE--GKTVVIYN----------KSYDTKIIRQTCK 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179 ++ R M + + R KL D N I+ AH A Sbjct: 116 KYELPTPRIKSECAMLLYAKYEGIINK---RTCEYKWHKLTDAIYKNNIQVTGEAHRALT 172 Query: 180 DVYATLALVWLI-----------REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 D TL L+ + ++ + +K + Q + V Sbjct: 173 DARMTLELLKFMACAEVNVSPRVHMNDSVHYKKNKPSNSIQPTKKKSNFQKIILKFFVVV 232 Query: 229 MFGASRSNTALI 240 +F + + Sbjct: 233 IFFLMLNMIWPL 244 >gi|281201272|gb|EFA75484.1| RNA exonuclease 2 [Polysphondylium pallidum PN500] Length = 451 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 7/115 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60 N + D E G D+ D + A + D + +E D L + Sbjct: 273 NRLIWVDLEMTGLDITKDHIMEMACIITDSELNVVEVGPELIVHIDDKDLNSMDQWCTEH 332 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 G + +K + + + +++ +F C + N++ D + Sbjct: 333 HGQSGLTEKCRQSKLSIQDAEKQMVEFLRKHVDKGQCPLAGNSVHQDKRFLLKEM 387 >gi|302879827|ref|YP_003848391.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] gi|302582616|gb|ADL56627.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] Length = 234 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 23/184 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G ++ DR V V ++ + F+ + + + E + + GI Sbjct: 43 VVVDVETSGLNLWEDRLISIGAVAVVNGKIELG--DSFYIVLQQEIVSEKENILLHGIGG 100 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A +GV A + F + + ++ FD + S++ W + Sbjct: 101 A-AQAEGVPAA---DALLAFLAFLQKDPLIAFHVTFDQTMIVRAISKYLGFSFKQPWSDM 156 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L+ + A L D I + H+A AD T Sbjct: 157 AYVMPALN-----------------PELAARFRSLDDWIAHFDIRNDARHNALADALVTA 199 Query: 186 ALVW 189 L Sbjct: 200 QLFQ 203 >gi|29831803|ref|NP_826437.1| oligoribonuclease [Streptomyces avermitilis MA-4680] gi|37999370|sp|Q82CS8|ORN_STRAW RecName: Full=Oligoribonuclease gi|29608920|dbj|BAC72972.1| putative 3'->5' exoribonuclease [Streptomyces avermitilis MA-4680] Length = 200 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60 Query: 60 I----TGITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +G+ + A + EA+ + + P + N++ D + + Sbjct: 61 TMHTASGLLDELAAGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFL--ARDMS 118 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++Y S L A+ N E Sbjct: 119 ALETYLHYRIVDVSSVKELARRWYPRAYF------------------------NSPEKSG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIRESIAELRYYRE 174 >gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909] Length = 184 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 32/210 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + FV D+ET + V+V + ES + Sbjct: 1 MAQNAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFHTL---VNPFDYFTETNIN 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P+ + QF + +N FD D+ Sbjct: 55 VHGIHPEDVQDAPG-FKHVYPYMLQFIDQ---LPVVAHNAAFDMNVLHQSLKSLNIDTPS 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ Q R A + L+ L ++ HDA Sbjct: 111 LTY--------------------FCSYQLAKRTINAYRYGLKHLMNHYHLDFHGHHDALN 150 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKN 209 D A + + + + + + + KN Sbjct: 151 DAKACAMITYRLLK-HYDDLQSMLNIYEKN 179 >gi|167619167|ref|ZP_02387798.1| oligoribonuclease [Burkholderia thailandensis Bt4] Length = 201 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55 + V D E G + DR + A V + + I ++ K D Sbjct: 19 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 75 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 G + + V EA+ + +I F P + N+I D + Sbjct: 76 ---NTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132 Query: 111 YRNFYDSYRW 120 + Sbjct: 133 PELERFFHYR 142 >gi|238853258|ref|ZP_04643643.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4] gi|238834142|gb|EEQ26394.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4] Length = 177 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET A V V E ++ D + + GI Sbjct: 2 NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDSRNIRVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I + ++ +N RFD R + + Sbjct: 56 TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L +A + + KL ++ A I + H+A +D A Sbjct: 110 ---FAIDTLATSKAF-------------EPNLPNHKLDTVSEALDINLWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|226949657|ref|YP_002804748.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|226843422|gb|ACO86088.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 253 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 30/207 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q ++++ + I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNKIEIKCPFEIIQIGAIKLNENFTTIDTFNALI-KPEIYSNLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + + + ++Y Sbjct: 58 PFVKNLTNLTMDSLNKAN-PFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELD 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S + N + A++ + +P + S ++ L + ++ + Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H+A D + T + I +K K Y Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187 >gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933] gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai] gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000] gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966] gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai] gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli] gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212] gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044] Length = 220 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHL---VHPDRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|253996722|ref|YP_003048786.1| oligoribonuclease [Methylotenera mobilis JLW8] gi|253983401|gb|ACT48259.1| Exonuclease RNase T and DNA polymerase III [Methylotenera mobilis JLW8] Length = 186 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 7/114 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59 N+ + D E G DR + A V D + + VF +D+ L +A Sbjct: 10 QNNLIWLDMEMSGLLPDSDRVLELAAVVTDADLNVLAESPVFVVHQSDEVLDGMDAWNKG 69 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 G + K + EAE S ++ +F + N+I D + Sbjct: 70 AHGRSGLIDKVKASTLSEAEASAQMIEFLKAHVPSGKSPMCGNSICQDRRFMAR 123 >gi|224373300|ref|YP_002607672.1| DNA polymerase III PolC-type [Nautilia profundicola AmH] gi|223589694|gb|ACM93430.1| DNA polymerase III PolC-type [Nautilia profundicola AmH] Length = 255 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 51/194 (26%), Gaps = 29/194 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + + D E + + + V++ + + +++ E +TGI Sbjct: 66 YCVVDIEVNNSKPNIGQVIEIGAVKI-KNLKIVDTFEFLIYAKD----VPKYVERVTGIN 120 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + E R+ F + + FD + + F + Sbjct: 121 QEMLKNE-ASQKEILRKFRLFL---GESVFVAHAADFDYNFLAHQFEKENLGEILN---- 172 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + A + L+ L + H A D T Sbjct: 173 ----------------RFLCTLTLSQKTLEAERYGLKYLMEELKLPEETHHRALGDAKTT 216 Query: 185 LALVWLIREKKPKL 198 + + E P Sbjct: 217 ARIFLMCLENLPDN 230 >gi|320332661|ref|YP_004169372.1| Exonuclease RNase T and DNA polymerase III [Deinococcus maricopensis DSM 21211] gi|319753950|gb|ADV65707.1| Exonuclease RNase T and DNA polymerase III [Deinococcus maricopensis DSM 21211] Length = 183 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 57/187 (30%), Gaps = 19/187 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D A+ V + E + D Y DPEA+ + GI Sbjct: 6 IIFLDTETGGMDPAVHPLLTVGLV-TLQDGEIT-RPLHLRVR-HDTYTVDPEAMRVNGID 62 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + AE + I + + ++G +N FD + R Sbjct: 63 LLTHHDEAHPPAEVAAAIRAYAAEVGRVMLGGHNFAFDLGFL-----RTLLPDRSR---- 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R +D GI L LA GIE+ AHDA D T Sbjct: 114 -VFRCGHVDTKTTAQFLIHAGI-----LPKKVGTALDQLAKHFGIEY-QAHDALEDARTT 166 Query: 185 LALVWLI 191 + Sbjct: 167 AIVYNEF 173 >gi|217974867|ref|YP_002359618.1| oligoribonuclease [Shewanella baltica OS223] gi|217500002|gb|ACK48195.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] Length = 181 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V +DD L D Sbjct: 6 NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + EA+ + F + N+I D + Sbjct: 66 HGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|114778579|ref|ZP_01453406.1| hypothetical protein SPV1_06299 [Mariprofundus ferrooxydans PV-1] gi|114551168|gb|EAU53728.1| hypothetical protein SPV1_06299 [Mariprofundus ferrooxydans PV-1] Length = 179 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 48/194 (24%), Gaps = 25/194 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + ++ D ET G A + V EA I Sbjct: 1 MSDILVLDTETTGLGDD-------AEIIEIGIINGSGE-TVMNTLVKPTISIPEEATAIH 52 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT L V A+ + ++ YN ++ Sbjct: 53 GITDNDLLNAPV-FADVVEELEGLIQ--GKILLIYNADYDLRLLRQSARKS--------K 101 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN---AHDAK 178 ++ VM F + W + + L + A G H A Sbjct: 102 VQINLEPAEVRCVMLEYAKFFGE---WNPKYENWKWQSLANAARRTGYVPAEGMLPHRAI 158 Query: 179 ADVYATLALVWLIR 192 AD A L + + Sbjct: 159 ADCVAALHVYRHMH 172 >gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z] gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z] Length = 226 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 28/200 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V +++ + + + + T +P + +PE++ I G Sbjct: 30 VVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGAGINPESMKING 89 Query: 63 ITPQK-ALRD-GVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I + V E+E + Q II +N FD + R Sbjct: 90 IDLESPIRNAIAVSESEAITGLFQMVRRGQKNAGCQRSIIVAHNAAFDHGFVMAAAERTK 149 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + L +M D A Sbjct: 150 IKRNPFHPFGSFDTATLSGLMFGQTVLIKACQSASIPFDSN-----------------QA 192 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L + Sbjct: 193 HSALYDTERTAELFCYMVNH 212 >gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 959 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 12/117 (10%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ H F + D T G DR + V +D+Q + + E +P D Sbjct: 1 MSPHPGFAVIDVVTTGFG-GSDRIVEVGVVLLDQQLREQGTWETL-VQPNRDI----ATC 54 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + +T E E + + Q I +N F+ + F R Sbjct: 55 HVHKLTATHLKNAPTWE-EVAPELAQVIR---GRIGVAHNASFEKRFLSKEFCRVGI 107 >gi|255690157|ref|ZP_05413832.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624444|gb|EEX47315.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 184 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 27/206 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V ++ + I +PA +Y + Sbjct: 1 MRNFAAIDFET--ANGKRTSICSVGVVIV-KEGKIINKIY-RLIRPAPNY-YTQWTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E I + + +N FD+ R ++ Y + Sbjct: 56 GLTYDDTIEAD-DFPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYGMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + RA + +L +A G + N H A AD Sbjct: 107 Y----PPYKFYCTCRASRKVF---------GKELPNHQLHTVAARCGYDLTNHHHALADA 153 Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207 A + LI + K R+ Sbjct: 154 EACAQIALLIIPEPKKTKSSRRKTRD 179 >gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131] gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131] Length = 293 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 54/217 (24%), Gaps = 28/217 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET Q V F DP V + GI Sbjct: 12 FIALDVET--ACSDAGSICQIGLACVFPDNRI----HTFSTLVNPGTRFDPFNVRLHGIG 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + E + S + ++ FD + + W Sbjct: 66 PDHVSGA-LRFDELLDHLFPLLSRH---HLVQHS-NFDKQALNAACRSCGREPPDFRWA- 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + R + L +L G++ N HDA D A Sbjct: 120 -----DSVTIARRAWP----------ELLRNGGHGLGNLKRVLGLDF-NHHDAGEDARAA 163 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 +V FE L KN + + T Sbjct: 164 ALVVLHAETHLNLTFEELIKPARKNHPAAITREGDPT 200 >gi|170752204|ref|YP_001783349.1| exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] gi|170659331|gb|ACB28381.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] Length = 298 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 42/184 (22%), Gaps = 34/184 (18%) Query: 3 NHFV--IYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAV 58 F+ + D ET G D D + ++ + + E Sbjct: 37 PTFIGLVVDVETTGTDFGTDEVIELGILKFEYGASGRIYRVLDTLNQLQEPRKPIPVEIT 96 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT G + Sbjct: 97 RLTGITDADVA-------------------------GQRIDDAAVARIAADAAVVIAHNA 131 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + W RW + + Q P R +G KL L G H H A Sbjct: 132 SFDWQMCEPRWP----VFREKNWGCSCHQIPWRAEGHEGLKLGYLLSDCGFFHRG-HRAI 186 Query: 179 ADVY 182 D + Sbjct: 187 DDCH 190 >gi|319944217|ref|ZP_08018493.1| oligoribonuclease [Lautropia mirabilis ATCC 51599] gi|319742512|gb|EFV94923.1| oligoribonuclease [Lautropia mirabilis ATCC 51599] Length = 236 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 34/197 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 V D E G +DR + A V D + + V D L D G Sbjct: 57 LVWLDMEMTGLHPDIDRIIEVAMVVTDSELNLLAEGPVLAIHQPDTVLDAMDKWNQSTHG 116 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + + + EA + +F + N+I D + R + Sbjct: 117 KSGLIDRVRASTLTEAAAQGILLEFIRAWAPEGKSPMCGNSIGQDRRFMA----RYMPEL 172 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 W L ++ R + SFK + AH A Sbjct: 173 ESWFHYRNLDVSTLKELARR------------WAPEVYRSFKKR-----------GAHTA 209 Query: 178 KADVYATLALVWLIREK 194 AD+ ++ + R+ Sbjct: 210 LADIQESIDELRHYRQH 226 >gi|315127531|ref|YP_004069534.1| DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913] gi|315016045|gb|ADT69383.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913] Length = 207 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 50/188 (26%), Gaps = 20/188 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++ D E G D A V +D + + + ++ Sbjct: 21 LKQRYLVIDLELTGLDPKQHEIVSVAWVLID---NECIKNSLSQHLVNKEVKSLEQSPVF 77 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ G + FS CI+ ++N D + + Sbjct: 78 HGISTDSVA-QGQSLQSIITSLSAHFSD---CILVFHNAMLDWGFLKLALKNAGIT---- 129 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + I+ L + + + H A D Sbjct: 130 --QRPKLIIDTLQIEKKRLLKHSSDIKL-------DDLTLNECRKRYDLPSYHCHHALTD 180 Query: 181 VYATLALV 188 AT L+ Sbjct: 181 AQATAELL 188 >gi|282855067|ref|ZP_06264399.1| exonuclease [Propionibacterium acnes J139] gi|282581655|gb|EFB87040.1| exonuclease [Propionibacterium acnes J139] gi|314982129|gb|EFT26222.1| exonuclease [Propionibacterium acnes HL110PA3] gi|315090368|gb|EFT62344.1| exonuclease [Propionibacterium acnes HL110PA4] gi|315093651|gb|EFT65627.1| exonuclease [Propionibacterium acnes HL060PA1] gi|315103870|gb|EFT75846.1| exonuclease [Propionibacterium acnes HL050PA2] gi|327325415|gb|EGE67219.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL103PA1] Length = 210 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 36/199 (18%) Query: 3 NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 FV D+ET G Q A V+V + ++ P E Sbjct: 41 PSFVAVDFETANRMGGVSA-----CQVAMVKV-CDGQIVDRLNTLIRPPKGWD--SFEFT 92 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ++ GI+ + + F + + +N FD R D + Sbjct: 93 YLHGISAADVADAP-SWTNIADTVSHFV---DGVTVYAHNAAFDSRVWRQ------LDEH 142 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177 + + + G ++KL + A + N H A Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189 Query: 178 KADVYATLALVWLIREKKP 196 +D A +V ++ + Sbjct: 190 DSDAEACALIVCELQRRAQ 208 >gi|226311041|ref|YP_002770935.1| hypothetical protein BBR47_14540 [Brevibacillus brevis NBRC 100599] gi|226093989|dbj|BAH42431.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 113 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 5/86 (5%) Query: 4 HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++I+D E + + V+++ I + F KP + + + Sbjct: 2 NYIIFDLEATCWENDRTKQNEIIEIGAVKLNENLAVIGEFQTFI-KPKLNPILSDFCKKL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF 86 T I+ ++ + E + Sbjct: 61 TSISQKEVDQAP-SFGEAISHFQNWI 85 >gi|154338964|ref|XP_001565704.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 499 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 69/246 (28%), Gaps = 45/246 (18%) Query: 8 YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D E G D + + ++ +P P +T Sbjct: 93 FDMEFTGPPVFTADGPTEDITELGVY-----SPLLDEVFSCLVQPVCGRKQGPGVEELTH 147 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNT----------CIIGYNNIRFDDYYSRNIFYR 112 IT ++G+ E +R +F P ++ + D + Sbjct: 148 ITDAMLAKEGIPFLEAWQRFLKFVQTPQPNEIPGSEERILLLSHGGKLADVSLIKWT--- 204 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EH 171 + + + D + ++R + P D S+KL DL I Sbjct: 205 --LEKFHMELPSSFVFGDTIHLIRDAHRRRPVT-----VDKHPPSWKLVDLVQWLHISPT 257 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 ++AH A D T ++ LY + ++ + + P + Sbjct: 258 LSAHRAGNDARMT--------------WDALYHTLLRYGDDEMTPREQLVPRFFDAEAKQ 303 Query: 232 ASRSNT 237 R T Sbjct: 304 RLREYT 309 >gi|50843187|ref|YP_056414.1| putative DNA polymerase III epsilon subunit (exonuclease) [Propionibacterium acnes KPA171202] gi|50840789|gb|AAT83456.1| putative DNA polymerase III epsilon subunit (exonuclease) [Propionibacterium acnes KPA171202] gi|314924210|gb|EFS88041.1| exonuclease [Propionibacterium acnes HL001PA1] gi|314964999|gb|EFT09098.1| exonuclease [Propionibacterium acnes HL082PA2] gi|315106149|gb|EFT78125.1| exonuclease [Propionibacterium acnes HL030PA1] Length = 236 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 36/199 (18%) Query: 3 NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 FV D+ET G Q A V+V + ++ P E Sbjct: 67 PSFVAVDFETANRMGGVSA-----CQVAMVKV-CDGQIVDRLNTLIRPPKGWD--SFEFT 118 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ++ GI+ + + F + + +N FD R D + Sbjct: 119 YLHGISAADVADAP-SWTNIADTVSHFV---DGVTVYAHNAAFDSRVWRQ------LDEH 168 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177 + + + G ++KL + A + N H A Sbjct: 169 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 215 Query: 178 KADVYATLALVWLIREKKP 196 +D A +V ++ + Sbjct: 216 DSDAEACALIVCELQRRAQ 234 >gi|58258529|ref|XP_566677.1| oligoribonuclease [Cryptococcus neoformans var. neoformans JEC21] gi|57222814|gb|AAW40858.1| oligoribonuclease, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 184 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 8/114 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITG 62 V D E G D DR + A + D + ++ + K + L + G Sbjct: 13 LVWVDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVLDNMGDWCREQHG 72 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110 + Q L ++ + ++ +++ D + Sbjct: 73 KSGLIQACLDSPYSYDTVVEKVLDYIRRWIPERGAGLLAGSSVHADMRFMLMGM 126 >gi|311743281|ref|ZP_07717088.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum DSM 15272] gi|311313349|gb|EFQ83259.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum DSM 15272] Length = 278 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 49/191 (25%), Gaps = 29/191 (15%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G D DR FA ++ A + G+ Sbjct: 59 LDLETTGVDPLRDRVVSFAL---------LDDQVERSGLVDPGVPIPEGASAVHGLDAAA 109 Query: 68 ALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + Q ++ N +D R R WS Sbjct: 110 LRGAPAPRGALTEVLDWVQQVVDRGVPLVVF--NAPYDLTMLRAEAERWGLVQPDWSRLL 167 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 P + W +L D+A +E NAHDA AD A Sbjct: 168 ---------------VIDPYVVDWGIVRGELGPRRLTDVAAYYEVELANAHDALADARAA 212 Query: 185 LALVWLIREKK 195 L + I + Sbjct: 213 LEVARQIAARH 223 >gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528] gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528] Length = 202 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 7/186 (3%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + +D ET G Q + + VD + ++ D P A + G Sbjct: 2 NMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGKNIFFAVDYIEPS--AEKVHGF 57 Query: 64 TPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 T + L G+ + F + +IG+N + S N + + + Sbjct: 58 TVETLYKLSSGMNFKDHLDEFLNDFQNAD-ILIGHNVNFDIKFLSSEFKNCNEILNIKHT 116 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + N ++ ++ ++ R + + ++ N HDA+ D Sbjct: 117 FCTMNYYKNICNLKNRYNKCKAPRLEEVVRFLHIENPYINAVSKKYFNGTGNFHDARFDT 176 Query: 182 YATLAL 187 AT L Sbjct: 177 TATYLL 182 >gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 193 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 26/198 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D ET G D+ D A V++ ++ + E + PE++ GIT Sbjct: 6 FCIVDLETTGLDLTTDTIINAAAVKI-KKGRITKIYETY---VKPPTSIPPESIQFHGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + E F ++ I G++ R++ + W + Sbjct: 62 DDMLVDKP-SIGEVLPEFMTFI--GDSMITGHHINFDLKMLDRHLRENYDCNLEGAPWLD 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L+ + TS +L DL I+ H A D AT Sbjct: 119 TMLLHKLV-------------------MENNTSTQLDDLLNVYCIDCEQRHRALGDSIAT 159 Query: 185 LALVWLIREKKPKLFEYL 202 + I + ++ L Sbjct: 160 AKVFLRILHELSNSYQTL 177 >gi|310640616|ref|YP_003945374.1| exonuclease rnase t and DNA polymerase iii [Paenibacillus polymyxa SC2] gi|309245566|gb|ADO55133.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus polymyxa SC2] Length = 223 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 24/190 (12%) Query: 5 FVIYDYE-TFGRDVALD-RPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++IYD E T R+ V+V + ++ F +P++ + + V Sbjct: 3 YIIYDLEFTVSRNARYSSEIIDIGAVKVIHGEDGLFVADTFHSF-VRPSNRPVISTDTVQ 61 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGIT + + E ++ + +T + + + Sbjct: 62 FTGITQRDIDAAPL-FPEAVKQFIAWLGTDSTYYLCAWGPDDRQKLVSHCRTHHV----- 115 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAK 178 L + + S + L Q L L N H A Sbjct: 116 -----------DLGWIHNTNDIQKQISRLFSSNGKYRQLSLSQALELCNIEFDGQQHRAL 164 Query: 179 ADVYATLALV 188 D T + Sbjct: 165 DDAVNTAQVF 174 >gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius CECT 5713] Length = 177 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + A V + D + + GI Sbjct: 2 NFVAIDFET--ANPKRYSACSLALTVVKNNL-IADQFYSL---IKPDTDFSWRNIQVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ E I FF+ N +I +N FD +D Sbjct: 56 TEKQVQNAP-SFPELWPHIQNFFTPNN--LIVAHNASFDSSVLLRT---------LEHYD 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD +R F D KL + I+ + H+A D A Sbjct: 104 ITLPHYQLLDTLRTSKKFFKDFEN----------HKLDTICNNLNIDLKHHHNALFDSTA 153 Query: 184 TLALVWLIRE 193 ++ Sbjct: 154 CAEILLYQAN 163 >gi|71910349|ref|YP_281899.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS5005] gi|71853131|gb|AAZ51154.1| ATP-dependent helicase [Streptococcus pyogenes MGAS5005] Length = 819 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 8 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 57 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 58 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 110 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 154 ADARATAILFLRLLQKIESLPIECLE 179 >gi|126172800|ref|YP_001048949.1| oligoribonuclease [Shewanella baltica OS155] gi|153002280|ref|YP_001367961.1| oligoribonuclease [Shewanella baltica OS185] gi|160877004|ref|YP_001556320.1| oligoribonuclease [Shewanella baltica OS195] gi|304410908|ref|ZP_07392525.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|307304921|ref|ZP_07584671.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] gi|166216585|sp|A3D017|ORN_SHEB5 RecName: Full=Oligoribonuclease gi|166216586|sp|A6WSV9|ORN_SHEB8 RecName: Full=Oligoribonuclease gi|125996005|gb|ABN60080.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica OS155] gi|151366898|gb|ABS09898.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] gi|160862526|gb|ABX51060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|304350805|gb|EFM15206.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|306912323|gb|EFN42747.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] gi|315269207|gb|ADT96060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 181 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V +DD L D Sbjct: 6 NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + EA+ + F + N+I D + Sbjct: 66 HGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|315502266|ref|YP_004081153.1| exonuclease rnase t and DNA polymerase iii [Micromonospora sp. L5] gi|315408885|gb|ADU07002.1| Exonuclease RNase T and DNA polymerase III [Micromonospora sp. L5] Length = 196 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 12/156 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G D+ D + A + D + D+ L PE V Sbjct: 1 MADLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVR 60 Query: 60 I----TGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 +G+T ++ R V AE + + P T + N+I D + Sbjct: 61 TMHAKSGLT-EEVRRSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMT 119 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 R D++ S L + + Sbjct: 120 R--LDAHLHYRMIDVSSIKELCRRWYPRVYFGQPQK 153 >gi|291617739|ref|YP_003520481.1| ExoX [Pantoea ananatis LMG 20103] gi|291152769|gb|ADD77353.1| ExoX [Pantoea ananatis LMG 20103] Length = 223 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 52/193 (26%), Gaps = 40/193 (20%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + A V V + + + D +A+ + Sbjct: 1 MMLR--VIDTETCGL---QGGVVEVASVDV-IDGQIVNPMSDL---VSPDRPISRQAMAV 51 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I+ + +E + +N FD R Sbjct: 52 HRISEAMVMGKPPIE-------EAILRYHGSPFYVAHNASFD---------RRMLPEMHG 95 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W + + R + WP G + + ++AH A D Sbjct: 96 EW------ICTMTLARQL---------WPGIKYGNQALRHSLKLDVTPPADLHAHRALYD 140 Query: 181 VYATLALVWLIRE 193 Y T AL+ I E Sbjct: 141 CYVTAALLIRIME 153 >gi|222153714|ref|YP_002562891.1| DNA polymerase III subunit epsilon [Streptococcus uberis 0140J] gi|222114527|emb|CAR43445.1| putative exonuclease [Streptococcus uberis 0140J] Length = 196 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 32/196 (16%) Query: 4 HFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 HF+ +D E + D+ Q + V++D +I+ + D +T Sbjct: 6 HFIAFDLE---FNTVNDKSHLIQLSAVKIDAD-TEIDHFNSY---VYTDVPLQSFINGLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT K + +EA F S +IGYN + D Sbjct: 59 GITADKIAQAPKIEA-VLSAFKAFVSDYP--LIGYNAHKSDLPILAENGLDL-------- 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + R D+ D + +GI + KL +A GI+ H++ D Sbjct: 108 --SNHYRVDVYDEAFERRSTDLNGIA---------NLKLTSVADFLGIK-GRGHNSLEDA 155 Query: 182 YATLALVWLIREKKPK 197 T + E Sbjct: 156 RMTAHVYQHFMELDAN 171 >gi|150025263|ref|YP_001296089.1| DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum JIP02/86] gi|149771804|emb|CAL43278.1| Probable DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum JIP02/86] Length = 160 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 31/186 (16%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F D+ET V V + ++ P + Y P + + G Sbjct: 2 TFTAIDFETATAFHP-----CSVGIVTV-QNGVIVDEFVTLIKPPNNQY--SPFTIAVHG 53 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P+ + E I + + +N FD D + Sbjct: 54 IRPRDTVNA-KSFLEVYPEIKKRLQNK---TVVAHNESFDRNVLAKSMALYGLD---YET 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N ++RW+ + F P KL D I+ N H+A +D Sbjct: 107 LNISNRWECTLKIYKAKGFKPT--------------KLSDCCQEMNIKL-NHHEALSDAR 151 Query: 183 ATLALV 188 A L Sbjct: 152 ACAKLY 157 >gi|328882628|emb|CCA55867.1| 3-to-5 oligoribonuclease [Streptomyces venezuelae ATCC 10712] Length = 200 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 56/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G + D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEIVR 60 Query: 60 ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 Q G+ EA+ I + P + N++ D + Sbjct: 61 ------QMHTASGLLDALAGGTTLADAEAQVLAYIREHVKEPGKAPLCGNSVSTDRGFLA 114 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ V + P A N Sbjct: 115 R-------DMPALESHLHYRIVDVSSVKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 E H A AD+ ++A + RE Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174 >gi|312863107|ref|ZP_07723345.1| DNA polymerase III, epsilon subunit [Streptococcus vestibularis F0396] gi|311100643|gb|EFQ58848.1| DNA polymerase III, epsilon subunit [Streptococcus vestibularis F0396] Length = 196 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E F + Q + +++++ E+++ + F D +TG Sbjct: 5 ETYIAFDLE-FNTVDGVSHIIQVSAIKLNQH-EEVDQFDSF---VYSDVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E+ F +T +IGYN ++ D + + Y Sbjct: 60 ITADKIAKAPKLES-VLADFKSFV--GDTPLIGYNALKSDLPI-LAENGLDLEEQYA--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ D A +GI + KL +A GI+ + H++ D Sbjct: 113 ------LDVSDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAQIYEKFLELDEN 171 >gi|168032166|ref|XP_001768590.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680089|gb|EDQ66528.1| predicted protein [Physcomitrella patens subsp. patens] Length = 180 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 17/121 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPAD-------DYL 52 M V D E G D+ DR + A + D + + +E + +P D Sbjct: 1 MQMPLVWIDLEMSGLDIEKDRILEIACIVTDGKLEKIVEGPVIVISQPEDVLQGMGEWCQ 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSR 107 A +T V E + + + +F ++ N+I D + + Sbjct: 61 EHHAASGLT----DSVRASTVTEDQAQQEVLEFLRKHTRGNSGQSMLAGNSIYVDLKFLK 116 Query: 108 N 108 Sbjct: 117 K 117 >gi|149041580|gb|EDL95421.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_e [Rattus norvegicus] Length = 113 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 18/52 (34%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90 >gi|149041581|gb|EDL95422.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_f [Rattus norvegicus] Length = 154 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 18/52 (34%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90 >gi|26355291|dbj|BAC41132.1| unnamed protein product [Mus musculus] Length = 121 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 18/52 (34%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M V D E G D+ D+ + A + D + K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90 >gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] Length = 309 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E IE KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIIEEVHHLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + + + +I +F+ ++ +N FD RN + Y Sbjct: 57 RPRMVQDE-LEFDKVWEKIKHYFNKN---LVIAHNASFDISVL-----RNTLELYNLE-- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + M+ F + +L + G E HDA AD A Sbjct: 106 --MPSFQYICTMKLSRNFYSNLDN----------ARLNTVNNFLGYEF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|116629923|ref|YP_815095.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus gasseri ATCC 33323] gi|282851483|ref|ZP_06260848.1| exonuclease [Lactobacillus gasseri 224-1] gi|311110442|ref|ZP_07711839.1| exonuclease [Lactobacillus gasseri MV-22] gi|116095505|gb|ABJ60657.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus gasseri ATCC 33323] gi|282557451|gb|EFB63048.1| exonuclease [Lactobacillus gasseri 224-1] gi|311065596|gb|EFQ45936.1| exonuclease [Lactobacillus gasseri MV-22] Length = 177 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET A V V E ++ D + I GI Sbjct: 2 NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I + ++ +N RFD R + + Sbjct: 56 TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L +A + + KL ++ A I + H+A +D A Sbjct: 110 ---FAIDTLATSKAF-------------EPNLPNHKLDTVSEALDINLWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1] gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1] Length = 224 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 26/218 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +R+D + I T + +P + + A+ TG Sbjct: 16 VVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANLEKAALDFTG 75 Query: 63 ITPQKALRDGVVEAE----FSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R+ + E+E ++ + I+ +N FD + R Sbjct: 76 IDPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLNAAIERCSIK 135 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + A + AH Sbjct: 136 RNPFHPFSSFDTASLAGLAYGQTVLAKACE-----------------AANIPFSNSQAHS 178 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 AK D T L I + ++ + ++ + Sbjct: 179 AKYDTEKTAELFCEIVNRWKQMGGWSQFSESQESAETM 216 >gi|306827727|ref|ZP_07460999.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes ATCC 10782] gi|304430045|gb|EFM33082.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes ATCC 10782] Length = 819 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 8 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 57 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 58 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 109 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 110 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 153 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 154 ADARATAILFLRLLQKIESLPIECLE 179 >gi|257138397|ref|ZP_05586659.1| oligoribonuclease [Burkholderia thailandensis E264] Length = 201 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55 + V D E G + DR + A V + + I ++ K D Sbjct: 19 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 75 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 G + + V EA+ + +I F P + N+I D + Sbjct: 76 ---NTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132 Query: 111 YRNFYDSYRW 120 + Sbjct: 133 PELERFFHYR 142 >gi|253999147|ref|YP_003051210.1| oligoribonuclease [Methylovorus sp. SIP3-4] gi|253985826|gb|ACT50683.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp. SIP3-4] Length = 182 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59 N+ + D E G DR + A V D + + V +D L +A Sbjct: 5 QNNLIWLDMEMSGLLPDSDRILELAAVVTDADLNILGESPVLVVHQSDAVLDGMDAWNKG 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + K + E S+++ +F + N+I D + Sbjct: 65 THGKSGLIDKVKASTLDEVSASQQMIEFLKQYVPAGKSPMCGNSICQDRRFMARYMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 SYFHYR 130 >gi|153808149|ref|ZP_01960817.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185] gi|149129052|gb|EDM20268.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185] Length = 200 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V + + +PA +Y I Sbjct: 1 MKDFAAIDFET--ANGKRTSVCSVGIVIV-KGGRIVNKIY-RLIRPAPNY-YTQWTTAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E I + +N FD+ R ++ Y + Sbjct: 56 GLTYDDTMEAD-DFPEVWAEIKPLLE---GLPLVAHNSPFDE-----GCLRAVHELYGMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + N + R + +L +A G N H A AD Sbjct: 107 YPN----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYNLENHHHALADA 153 Query: 182 YATLALV 188 A + Sbjct: 154 EACAQIA 160 >gi|37200012|dbj|BAC95841.1| oligoribonuclease [Vibrio vulnificus YJ016] Length = 227 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + + A + D + + V +++ L D Sbjct: 52 QNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNT 111 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ ++ + E E + F I N+I D + Sbjct: 112 HTGSGL-VERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELE 170 Query: 115 YDSYRW 120 + Sbjct: 171 GYFHYR 176 >gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Arthrobacter phenanthrenivorans Sphe3] gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 52/202 (25%), Gaps = 27/202 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET + P +V R E P + D V I GI Sbjct: 3 FTAIDFET--ANGFRGSPCAVGLTKV-RGGRIAEEASWLMQPPLNHDHFDYHNVRIHGIR 59 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ E I F I+ +N FD R+ + Sbjct: 60 PEHVAGKPR-FGELFPEIGAFI---GDDILAAHNAAFDLGVIRSGLEVSGLP-------- 107 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D + + S L A G+ VN HDA D A Sbjct: 108 -GPAYDYVCTVMLSRRCY-----------SLVSNSLPFAAEEAGVPLVNHHDAAEDARAC 155 Query: 185 LALVWLIREKKPKLFEYLYDYR 206 ++ I + Sbjct: 156 AGILIDIARRNRANSIAELYLS 177 >gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735] gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735] Length = 284 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 45/186 (24%), Gaps = 36/186 (19%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F + D ET VRV+ ++ DD + Sbjct: 3 KHTFTVIDIET--MTPERTSACALGLVRVEND-VIVQKFYSLIKPIPDDRTVT--NTHVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP+ E I + S ++ +N FD + + Sbjct: 58 GITPEMVENAP-TFQELWPTIEHYIS---GQVLAAHNTSFDLDVLKKVSAHYGITIPITG 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + S T L + ++ HDA D Sbjct: 114 VVDTFS---------------------------LTHLSLDETCKVLHVDLGKHHDALCDA 146 Query: 182 YATLAL 187 A + Sbjct: 147 TACAEI 152 >gi|212211731|ref|YP_002302667.1| ribonuclease T [Coxiella burnetii CbuG_Q212] gi|212010141|gb|ACJ17522.1| ribonuclease T [Coxiella burnetii CbuG_Q212] Length = 221 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + + A V V+ E P + DP ++ IT Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E + + + F ++ +N FD + + R Sbjct: 81 IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + A + AH Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALR-----------------AANLPFDKKEAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D L I + Sbjct: 184 AIYDAKCAAELFCKITNQ 201 >gi|94500535|ref|ZP_01307066.1| oligoribonuclease [Oceanobacter sp. RED65] gi|94427325|gb|EAT12304.1| oligoribonuclease [Oceanobacter sp. RED65] Length = 185 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 ++ + D E G + A DR + A + D + + V D + D Sbjct: 9 KHNLIWIDLEMTGLEPAQDRIIEIATIVTDSELNVLAEGPVLAIHQPDSLMNNMDEWNTR 68 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + ++ + E E ++ F + N++ D + Sbjct: 69 THGNSGLTKRVKESDIDEQEAVKQTIAFLQQYVGKGVSPMCGNSVHQDRRFLNKYMPELE 128 Query: 115 YDSYRW 120 + Sbjct: 129 DFFHYR 134 >gi|62263510|gb|AAX78167.1| unknown protein [synthetic construct] Length = 213 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G DV + + A + D+ I E D+ L + + Sbjct: 31 DNLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 90 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T Q+ + ++I +F + + N+I D + Y Sbjct: 91 HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 147 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D Y + LL+ + DD S Sbjct: 148 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 190 >gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1] gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1] gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200] Length = 223 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 64/217 (29%), Gaps = 26/217 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + I+ T F +P + +P A+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIH------QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I Q + + CII +N FD + R Sbjct: 80 IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + + D AH Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNK-----------------EAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 A D T L I + +L + Sbjct: 183 ALYDTERTAELFCYIVNRWKQLGGWPLLAAGAQDAES 219 >gi|119897809|ref|YP_933022.1| oligoribonuclease [Azoarcus sp. BH72] gi|166215750|sp|A1K5N0|ORN_AZOSB RecName: Full=Oligoribonuclease gi|119670222|emb|CAL94135.1| oligoribonuclease [Azoarcus sp. BH72] Length = 182 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 NH + D E G + DR + A V D Q I V + L D Sbjct: 5 PNHLIWLDMEMTGLEPDRDRIIEIALVITDSQLNTIAEAPVIAVHQPESVLDAMDDWNKN 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYY 105 G + + V EAE R+ F T + N+I D + Sbjct: 65 THGKSGLIDRVRASTVSEAEAEARMLAFLQEWVPARTSPMCGNSICQDRRF 115 >gi|90578520|ref|ZP_01234331.1| hypothetical protein VAS14_15754 [Vibrio angustum S14] gi|90441606|gb|EAS66786.1| hypothetical protein VAS14_15754 [Vibrio angustum S14] Length = 186 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 8/126 (6%) Query: 3 NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + V +D E GR + +D KI + +PA D + P Sbjct: 4 DRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEI-SPFCT 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI P+ ++G + + I Q F + + DD + Sbjct: 63 ELTGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAW---GHDDRILKKECLAKELKVP 119 Query: 119 RWSWDN 124 + N Sbjct: 120 FREYLN 125 >gi|83720885|ref|YP_442207.1| oligoribonuclease [Burkholderia thailandensis E264] gi|83654710|gb|ABC38773.1| oligoribonuclease [Burkholderia thailandensis E264] Length = 229 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55 + V D E G + DR + A V + + I ++ K D Sbjct: 47 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 103 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 G + + V EA+ + +I F P + N+I D + Sbjct: 104 ---NTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 160 Query: 111 YRNFYDSYRW 120 + Sbjct: 161 PELERFFHYR 170 >gi|331005310|ref|ZP_08328699.1| Oligoribonuclease [gamma proteobacterium IMCC1989] gi|330420886|gb|EGG95163.1| Oligoribonuclease [gamma proteobacterium IMCC1989] Length = 180 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G D + A + D + + +D+ L D Sbjct: 5 DNLIWIDLEMTGLYPNDDVIIEIATIVTDSDLNILAEGPMLAIHQSDERLAAMDEWNTNQ 64 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ + ++ ++ F + N+I D + N Sbjct: 65 HGKSGLTERVRNSNISASDAEQQTIDFLKQWVPAGKSPMSGNSICQDRRFLANYMPALEN 124 Query: 116 DSYRW 120 + Sbjct: 125 YFHYR 129 >gi|310767851|gb|ADP12801.1| exodeoxyribonuclease X [Erwinia sp. Ejp617] Length = 221 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A V V + + D +A+ + IT Sbjct: 2 FRVIDTETCGL---QGGVVEVASVDV-INGQILNPMSDLIS---PDRPISRQAMAVHKIT 54 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + R H + +N FD Sbjct: 55 EAMVRGKPAIE-QAIGRYH------GSPFYVAHNASFDRRM------------------L 89 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + M WP + + + ++AH A D Y T Sbjct: 90 PEMHGDWICTMTLARRL------WPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVT 143 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 144 AALLMRIMSF 153 >gi|307324588|ref|ZP_07603795.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306889832|gb|EFN20811.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 202 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G +A D + A + D + +P + L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNIQGEGVDIVVRPPAEALVTMPEVVR 60 Query: 60 -IT-----------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + G T + A + I + + N++ D + Sbjct: 61 DMHTTSGLLAELEGGTTLEDAQD------QVLAYIRKHVPEAGKAPLCGNSVGTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ + + P A N Sbjct: 113 -----LLRDMPTLESYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 + H A AD++ ++A + RE Sbjct: 149 SPKKNGNHRALADIHESIAELRYYRE 174 >gi|218885422|ref|YP_002434743.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756376|gb|ACL07275.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 267 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 65/215 (30%), Gaps = 37/215 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D E G + A D V + +++ + F PE V + GI Sbjct: 25 FVSLDCEMTGLNPARDDLLAVGAVVLR--GMRLDLSATFRGLLRPACPVRPEGVPVHGIL 82 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR-----------FDDYYSRNIFYRN 113 P +A A+ + R+ + + N D+ + R Sbjct: 83 PGEAAHGDEAAAQLA-RLDAWLAGCAAVPGAGNGAEAPVVLLGWCLGLDEAFLAAGRKRA 141 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAF-----SPDGIQWPSRDDGATSFK--------- 159 + R D+LD+ R + A S G PS S Sbjct: 142 GLP------ARTHPRCDVLDLFRHVRARGVAAPSGQGAMPPSGASPLPSTHAALADIPLK 195 Query: 160 ---LQDLALANGIEHVNAHDAKADVYATLALVWLI 191 L +A A G++ AHDA D + + Sbjct: 196 DADLYAVARALGVDVHGAHDALGDACMCAQVFQRL 230 >gi|313201249|ref|YP_004039907.1| exonuclease rnase t and DNA polymerase III [Methylovorus sp. MP688] gi|312440565|gb|ADQ84671.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp. MP688] Length = 182 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59 N+ + D E G DR + A V D + + V +D L +A Sbjct: 5 QNNLIWLDMEMSGLLPDSDRILELAAVVTDADLNILGESPVLVVHQSDAVLDGMDAWNKG 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + K + E S+++ +F + N+I D + Sbjct: 65 THGKSGLIDKVKASTLDEVSASQQMIEFLKQFVPAGKSPMCGNSICQDRRFMARYMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 SYFHYR 130 >gi|269986750|gb|EEZ93030.1| Exonuclease RNase T and DNA polymerase III [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 199 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 10/132 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 ++ D ET G V + E C+ D EA+ + G Sbjct: 2 IVVDIETSGTSPYNHSILSIGAV----DFSNPERQFYQECQIEKDKEYTEEALNVNGFKK 57 Query: 66 QKALR-DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + IG +N+ FD + F + Y ++ Sbjct: 58 EELTDPKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKK-----YNINFSF 112 Query: 125 GNSRWDLLDVMR 136 G+ D ++ Sbjct: 113 GHRVIDTHSLVY 124 >gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 309 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + + IE KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGKIIEEVHHLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + + + +I +F+ ++ +N FD RN + Y Sbjct: 57 RPRMVQDE-LEFDKVWEKIKHYFNEN---LVIAHNASFDISVL-----RNTLELYNIE-- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + M+ F + +L + G E HDA AD A Sbjct: 106 --MPSFQYICTMKLSKNFYSNLDN----------ARLNTVNNFLGYEF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CGNIL 157 >gi|78047167|ref|YP_363342.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925832|ref|ZP_08187202.1| RNAse T [Xanthomonas perforans 91-118] gi|123585431|sp|Q3BV71|RNT_XANC5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|78035597|emb|CAJ23268.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543767|gb|EGD15180.1| RNAse T [Xanthomonas perforans 91-118] Length = 213 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 58/211 (27%), Gaps = 39/211 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52 M+ F V+ D ET G D + A V + D T PA Sbjct: 18 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDTDGRFFPGETASAHLVPAPGLE 77 Query: 53 PDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRFD 102 DP+++ ITGI L A+ + I+ +N FD Sbjct: 78 IDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFD 133 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + R + + S +D + + Y G T Sbjct: 134 LNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAA 176 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 177 QAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 >gi|307327138|ref|ZP_07606327.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306887219|gb|EFN18216.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 202 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 59/207 (28%), Gaps = 32/207 (15%) Query: 2 TNHFVIYDYE--TFGRDVALD--------RPAQFAGVRVDRQ-----WEKIESTEVFFCK 46 + FV++D E T+ + D Q +R+ + +E E Sbjct: 1 MSMFVVFDLEFTTWSGALEQDWSEPGQLREIVQIGALRISTDSSVDAYSVVEEYEALVRP 60 Query: 47 PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106 + L P +TGI Q R+GV AE F ++ Y N + Sbjct: 61 VVNPRL-SPFFTDLTGIDQQTVDREGVAPAEALSDFLAFCR--GQSVLSYGNDMVVLGEN 117 Query: 107 RNIFYRNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 + G L+ + I A + G W + + Sbjct: 118 VGWARARGEEIKNGFLTAGFLNIRPWLNTVAPITASANSGRLWEALNLPKPV-------- 169 Query: 166 ANGIEHVNAHDAKADVYATLALVWLIR 192 H A D Y+ A + + Sbjct: 170 -----AGREHSALFDCYSIAAAIRHVF 191 >gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 176 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 45/187 (24%), Gaps = 31/187 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET G A R+ E P+ L I G+T Sbjct: 10 VAIDFETSG--YAAHSACAVGLARI-EDGRVTEQFYSLVRPPSSRVLF----TEIHGLTW 62 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 V + ++ F ++ +N FD Sbjct: 63 PMLKNAPV-FGDVWPQMESFMKGAG--VLLAHNASFDRRVLLACCREAG----------- 108 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ R S KL + GI + H +D A Sbjct: 109 ---------AGVPEQHFLCTLKGARRSLPLPSKKLNHVCEHFGIALEHHHAG-SDAAACA 158 Query: 186 ALVWLIR 192 + +R Sbjct: 159 EVYLHLR 165 >gi|146422161|ref|XP_001487022.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC 6260] gi|146388143|gb|EDK36301.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC 6260] Length = 288 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 69/230 (30%), Gaps = 50/230 (21%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYLP 53 V D E G +V D + + D I+S + + + Sbjct: 78 KPLVWIDCEMTGLNVYEDHIIEICCIITDGHMNIIDSQGYESTIYYPKEVLDSMNEWCVD 137 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 G+T + + + ++ PN I+ N+I D ++ F Sbjct: 138 QHGKS---GLTAKVLENTDRTLEKVQDELLEYIKRFVEPNKGIMAGNSIHMDKFFMNREF 194 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 R + D+ +M + +P+ ++ + D Sbjct: 195 PRVIDYLHYR-------LIDVSTIMEIGHRHNPELMKLFPKKD----------------- 230 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 H AK+D+ ++A + + + ++K+ ++ I+ Sbjct: 231 --GNHTAKSDILESIAQLK---------WYKKHYLKSKDDVKDFINENKP 269 >gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 219 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D+ E F KP + + +A+ Sbjct: 20 VVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGSIINSDAIAFNK 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTC------IIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR + E I + + I+ +N FD + R Sbjct: 80 IDPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNFLMAAIQRVKIK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + A+ ++ AH Sbjct: 140 NNPFHPFVTFDTAALSGLAVGQTVLAKACK-----------------AIGLSFDNNQAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDSLQTANLFCKIVNR 200 >gi|315634034|ref|ZP_07889323.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393] gi|315477284|gb|EFU68027.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393] Length = 182 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K +D + Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIHQSDELLNKMSDWCVK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + E + F I N++ D + Sbjct: 65 THTA---NGL-VERVKNSKLTERAAELQTLDFLKKYVPKGVSPICGNSVAQDKRFLFKYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PELADYFHYRH 131 >gi|50913902|ref|YP_059874.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10394] gi|139474153|ref|YP_001128869.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes str. Manfredo] gi|50902976|gb|AAT86691.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10394] gi|134272400|emb|CAM30656.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo] Length = 833 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|15674717|ref|NP_268891.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes M1 GAS] gi|13621839|gb|AAK33612.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] Length = 833 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|94993950|ref|YP_602048.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10750] gi|94547458|gb|ABF37504.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10750] Length = 833 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|21909995|ref|NP_664263.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS315] gi|28896308|ref|NP_802658.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes SSI-1] gi|21904184|gb|AAM79066.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS315] gi|28811559|dbj|BAC64491.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1] Length = 833 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|328873520|gb|EGG21887.1| nucleotide binding protein 1-like protein [Dictyostelium fasciculatum] Length = 879 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 15/119 (12%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD--------DYLPD 54 N + D E G D+ DR + A + D + IE+ D Sbjct: 102 NRLIWVDLEMTGLDITKDRIMEIACIVTDDNLQVIEAGPDLCVYIDDAALDGMGKWCKEH 161 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 +T Q+ + E + + +F + C + N + D + Sbjct: 162 HGDSGLT----QRCRESKISIQEAEKIMVEFLAKHVHKGMCPLAGNTVHEDKKFLLKEM 216 >gi|289663085|ref|ZP_06484666.1| ribonuclease T [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 211 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 60/212 (28%), Gaps = 41/212 (19%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51 M+ F V+ D ET G D + A V ++ + ++ PA Sbjct: 16 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLV-PAPGL 74 Query: 52 LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101 DP+++ ITGI L A+ + I+ +N F Sbjct: 75 EIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHF 130 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + R + + S +D + + Y G T Sbjct: 131 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 173 Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 174 AQAAGLDWNTADAHSAVYDTEQTARLFCTIAN 205 >gi|166712351|ref|ZP_02243558.1| oligoribonuclease [Xanthomonas oryzae pv. oryzicola BLS256] Length = 194 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 42/205 (20%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58 ++ + D E G D D + A + D Q + E+ P + EA+ Sbjct: 8 SDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDE 63 Query: 59 ---FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 + Q+ L V A+ + F + N+I D + Sbjct: 64 WNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 R + D+ + ++P ANG Sbjct: 124 SRLERYFHYR-------NLDVSTIKELARRWAPTL--------------------ANGFA 156 Query: 171 HVNAHDAKADVYATLALVWLIREKK 195 +AH A +DV ++ + R+ Sbjct: 157 KSSAHTALSDVRDSIDELRHYRQFM 181 >gi|71903180|ref|YP_279983.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS6180] gi|71802275|gb|AAX71628.1| ATP-dependent helicase [Streptococcus pyogenes MGAS6180] Length = 833 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|21230975|ref|NP_636892.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769021|ref|YP_243783.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004] gi|188992135|ref|YP_001904145.1| ribonuclease T [Xanthomonas campestris pv. campestris str. B100] gi|24638163|sp|Q8PAG3|RNT_XANCP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81305015|sp|Q4UT60|RNT_XANC8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21112595|gb|AAM40816.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574353|gb|AAY49763.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004] gi|167733895|emb|CAP52101.1| Ribonuclease T [Xanthomonas campestris pv. campestris] Length = 216 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 59/211 (27%), Gaps = 39/211 (18%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYL 52 M+ F V+ D ET G D + A V ++ + T PA Sbjct: 18 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAQGHFFPGETASAHLVPAPGLE 77 Query: 53 PDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRFD 102 DP+++ ITGI L A+ + I+ +N FD Sbjct: 78 IDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFD 133 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + R + + S +D + + Y G T Sbjct: 134 LNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAA 176 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 177 QAAGLDWNSADAHSAVYDTEQTARLFCKIAN 207 >gi|127511493|ref|YP_001092690.1| oligoribonuclease [Shewanella loihica PV-4] gi|166216587|sp|A3QAD3|ORN_SHELP RecName: Full=Oligoribonuclease gi|126636788|gb|ABO22431.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 181 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + + D E G + +DR + A + D++ + V ++D L D Sbjct: 7 NLIWVDLEMTGLEPEVDRIIEIATIVTDKELNILAEGPVIAIHQSEDVLAAMDDWNQKHH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + E + + F S + N+I D + Sbjct: 67 GESGLIDRVRASDFSEQDAIEQTIAFLSEHVPAGVSPMCGNSIGQDRRFLNRYMPTLEDY 126 Query: 117 SYRW 120 + Sbjct: 127 FHYR 130 >gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] Length = 201 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 46/169 (27%), Gaps = 26/169 (15%) Query: 42 VFFCKPAD-DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100 F P+A+ + GI+ ++ L V AE +F + + +N Sbjct: 4 TFHKFINPQGRQVHPDALAVHGISNEQLLDKPV-FAEILDEFLEFI---DGARLVAHNAM 59 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 FD + R D L + R + P+ L Sbjct: 60 FDLGFINAELARLDQAEITSEH-----IVDTLALARRKHPMGPN--------------SL 100 Query: 161 QDLALANGIE--HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207 L GI+ H H A D + + K + + Sbjct: 101 DALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGGKQTALGLTMESGS 149 >gi|209559092|ref|YP_002285564.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes NZ131] gi|209540293|gb|ACI60869.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus pyogenes NZ131] Length = 833 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|206579385|ref|YP_002240881.1| oligoribonuclease [Klebsiella pneumoniae 342] gi|288937537|ref|YP_003441596.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|206568443|gb|ACI10219.1| oligoribonuclease [Klebsiella pneumoniae 342] gi|288892246|gb|ADC60564.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] Length = 181 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + +D L D V Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ + V E + +F I N+I D + + Sbjct: 66 HTGSGL-VDRVKASAVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AYFHYR 130 >gi|295098321|emb|CBK87411.1| Oligoribonuclease (3'->5' exoribonuclease) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 181 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + +DD L D V Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQLALMDEWNVRT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ ++ + + E +F I N+I D + Sbjct: 66 HTGSGL-VERVKASSLGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 SYFHYR 130 >gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] Length = 245 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 27/202 (13%) Query: 4 HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F I+D ET G D +++ Q KI + F+ E TG Sbjct: 62 TFTIFDLETTGFFPEIGDEIVSIGAIKM--QGNKILDQKTFYEVINPLQNVSLETKRFTG 119 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + ++ + + F I+ + FD + + + S+ + Sbjct: 120 LRRTDFIKAKTLPV----GLKDFLEFCKGTILVAHPASFDINFLQKRIRKWDLPSFEPEY 175 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + L + Y L DL I H A D Sbjct: 176 IDSYALAKELLNEQKCY--------------------LDDLVKKFQISEKTRHHALNDAI 215 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 T + + + Sbjct: 216 MTAEVFQELLILCKEKKVETIS 237 >gi|58000402|ref|YP_190104.1| YacC [Escherichia coli] gi|219586145|ref|YP_002456239.1| YacC [Escherichia coli] gi|57903302|gb|AAW58931.1| YacC [Escherichia coli] gi|218931728|gb|ACL12501.1| YacC [Escherichia coli] gi|323958954|gb|EGB54627.1| exonuclease [Escherichia coli H489] Length = 282 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 50/191 (26%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETWLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A AD Sbjct: 210 LTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|148227894|ref|NP_001089039.1| ERI1 exoribonuclease 2 [Xenopus laevis] gi|82179168|sp|Q5HZL1|ERI2_XENLA RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease domain-containing protein 1 gi|57032602|gb|AAH88972.1| Exod1 protein [Xenopus laevis] Length = 687 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 57/200 (28%), Gaps = 21/200 (10%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D+E+ G+ +F V ++ E + +P + + Sbjct: 38 LIIIDFESTCWKDGKHSTQ-EIIEFPAVLLNVSNGEIESEFHT-YVQPQEHPILSDFCTE 95 Query: 60 ITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-----Y 111 +TGI Q+ + ++F+ I + + + F + Sbjct: 96 LTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTWSDW 155 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + D+L+ + A + +R + LQDL + Sbjct: 156 DLGVCLLYECRRKQMKKPDILNSWIDLRATYK---LFYNRRPKGLNGALQDLGIEFS--- 209 Query: 172 VNAHDAKADVYATLALVWLI 191 H D T L + Sbjct: 210 GREHSGLDDSRNTAKLASRM 229 >gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor] gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor] Length = 435 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 56/189 (29%), Gaps = 27/189 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADD-YLPDPEAVFITG 62 V D ET + +F V V R+ + S D +PDP A +G Sbjct: 20 IVFLDVETS-TPPRV--LLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTA-RCSG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +++ G+N ++FD R+ F Sbjct: 76 ITRDAVADAP-PFRDVADKVYDVL--HGRVWAGHNIVKFDSVIIRDAFAEIGRPPPE--- 129 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D L ++ A KL LA G+ H + DV Sbjct: 130 --PKGMVDTLPLL------------TQWFGPRAGDMKLASLANYFGLG-KQRHRSLDDVK 174 Query: 183 ATLALVWLI 191 + ++ Sbjct: 175 MNIDVLKNC 183 >gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36] gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36] Length = 231 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 62/208 (29%), Gaps = 26/208 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + +D I T F +P + + A+ TG Sbjct: 19 VVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFTG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I++ + I+ +N FD + R Sbjct: 79 IDPTNPLRGAVPEREAITEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKIK 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + +A +H AH Sbjct: 139 RNPFHPFATFDTTTLAGLAVGQTVLAKAC-----------------VAAGIPFDHKQAHS 181 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204 AK D T L I K + + Sbjct: 182 AKYDTEQTAELFCYIVNKWKDMGGWPLA 209 >gi|330998364|ref|ZP_08322188.1| exonuclease [Paraprevotella xylaniphila YIT 11841] gi|329568470|gb|EGG50275.1| exonuclease [Paraprevotella xylaniphila YIT 11841] Length = 164 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 53/190 (27%), Gaps = 27/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 N F D+ET + V V R E +P +Y + + Sbjct: 1 MNDFAAIDFET--ANGQRSSICSVGLVVV-RNREITIRHY-RLVRPYPNY-YNYWNTQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G++ Q E R I + +N FD+ + F + Sbjct: 56 GLSFQDTAHA-APFPEVWREIIPLIE---GLPLVAHNRPFDEGCLKAAFQAYGME----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +RA + +LQ +AL G + H A AD Sbjct: 107 ----YPGYPFHCTLRASRLAF---------GRDLPNHQLQTVALRCGYDLTQHHHALADA 153 Query: 182 YATLALVWLI 191 A + I Sbjct: 154 EACARIALKI 163 >gi|94990039|ref|YP_598139.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10270] gi|94543547|gb|ABF33595.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10270] Length = 833 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|86147892|ref|ZP_01066197.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|218710857|ref|YP_002418478.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|85834319|gb|EAQ52472.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|218323876|emb|CAV20237.1| putative DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32] Length = 210 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 52/201 (25%), Gaps = 21/201 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D ++ I I Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQP--FEVRLRAPQSLDCNSIKIHRIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E + + F N ++GY+ R + + + Sbjct: 88 HQDL-KHGIEEKQALIELLNFI--GNRPLVGYHIRYDKKILDRACLKQLGFPLPNRLVEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYA 183 D L+ F + + + N HDA D + Sbjct: 145 SQLYQDKLERQLPNAYF---------------DLSMDAICRQLDLPIPVNKHDALQDAIS 189 Query: 184 TLALVWLIREKKPKLFEYLYD 204 + ++ F Y Sbjct: 190 AALIFVRLKHGDLPRFNSSYS 210 >gi|262045407|ref|ZP_06018430.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003307|ref|ZP_08304578.1| oligoribonuclease [Klebsiella sp. MS 92-3] gi|259037236|gb|EEW38484.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537018|gb|EGF63306.1| oligoribonuclease [Klebsiella sp. MS 92-3] Length = 181 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + +D L D V Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ + V E + +F I N+I D + + Sbjct: 66 HTGSGL-VDRVKASTVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AYFHYR 130 >gi|237715092|ref|ZP_04545573.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408959|ref|ZP_06085504.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643917|ref|ZP_06721705.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294809982|ref|ZP_06768656.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|298481822|ref|ZP_07000012.1| exonuclease [Bacteroides sp. D22] gi|229444925|gb|EEO50716.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353170|gb|EEZ02265.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640767|gb|EFF58997.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294442828|gb|EFG11621.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|295087790|emb|CBK69313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bacteroides xylanisolvens XB1A] gi|298272044|gb|EFI13615.1| exonuclease [Bacteroides sp. D22] Length = 198 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V + + + +PA +Y I Sbjct: 1 MRNFAAIDFET--ANGKRTSVCSVGVVIV-KDGKIVNKIY-RLIRPAPNY-YTQWTTAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + + I + + +N FD+ R ++ Y + Sbjct: 56 GLTYDDTMEA-EDFPDVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + N + R + +L +A G N H A AD Sbjct: 107 YPN----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYNLENHHHALADA 153 Query: 182 YATLALV 188 A + Sbjct: 154 EACAQIA 160 >gi|119715587|ref|YP_922552.1| oligoribonuclease [Nocardioides sp. JS614] gi|119536248|gb|ABL80865.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 222 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 19/118 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59 M V D E G D+ D + A + D + S K P EA+ Sbjct: 1 MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVK------PPAEALDQ 54 Query: 60 ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + + G+ E + + +F + + N + D + Sbjct: 55 MNEFVRDMHEKSGLLRELDSGISLDEAEEQVLAYVKEFCPDGSRPPLAGNTVATDRAF 112 >gi|254360517|ref|ZP_04976666.1| exoribonuclease II [Mannheimia haemolytica PHL213] gi|261492357|ref|ZP_05988919.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496143|ref|ZP_05992551.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091057|gb|EDN73062.1| exoribonuclease II [Mannheimia haemolytica PHL213] gi|261308245|gb|EEY09540.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312040|gb|EEY13181.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 184 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 15/130 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D +R + A + D+ + T+ K +D + Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAVHQTDDLLEKMSDWCVKT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A G+ ++ + E + F I N+I D + Sbjct: 66 HTA---NGL-IERVKASKLTERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFLYKYMP 121 Query: 112 RNFYDSYRWS 121 + Sbjct: 122 DLADYFHYRH 131 >gi|332523967|ref|ZP_08400219.1| putative DNA polymerase III, epsilon subunit [Streptococcus porcinus str. Jelinkova 176] gi|332315231|gb|EGJ28216.1| putative DNA polymerase III, epsilon subunit [Streptococcus porcinus str. Jelinkova 176] Length = 195 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 34/204 (16%) Query: 1 MTN--HFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M +++ +D E + D Q + V++ E+I+S + F D Sbjct: 1 MKKLTNYIAFDLE---FNTVKDVSHLIQLSAVKM-ANHEEIDSFDSF---VYTDVPLQSF 53 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT K + + + F +IGYN+ + D N D Sbjct: 54 INGLTGITADKIAKAPKIN-QVLEEFKAFVGDC--ALIGYNSEKSDLPILA----DNGLD 106 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + DL D + +GI T+ KL +A GI+ H+ Sbjct: 107 ------LSEQYTVDLYDEAFERRSSDLNGI---------TNLKLTTVASFLGIK-GKGHN 150 Query: 177 AKADVYATLALVWLIREKKPKLFE 200 + D T + E Sbjct: 151 SLEDARMTARVYEAFLELDDNKNY 174 >gi|239979599|ref|ZP_04702123.1| oligoribonuclease [Streptomyces albus J1074] gi|291451465|ref|ZP_06590855.1| oligoribonuclease [Streptomyces albus J1074] gi|291354414|gb|EFE81316.1| oligoribonuclease [Streptomyces albus J1074] Length = 200 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G +A D + A + D + + +P D+ L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDEALETMPEVVR 60 Query: 60 ITGITPQKALR--DGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + +G EA+ + + P + N++ D + Sbjct: 61 KMHTSSGLLAELAEGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRNFLARDMAAL 120 Query: 114 FYDSYRW 120 + Sbjct: 121 EGYLHYR 127 >gi|238927543|ref|ZP_04659303.1| possible exonuclease [Selenomonas flueggei ATCC 43531] gi|238884825|gb|EEQ48463.1| possible exonuclease [Selenomonas flueggei ATCC 43531] Length = 219 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 29/200 (14%) Query: 6 VIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D E G++ + VR++ + + + + + C + + Sbjct: 4 IVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVC--PEYGMVKKHI 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT +K F+ H F + Y+ D R R Sbjct: 62 TELTGITQEKVAGHPA----FADSFHAFVAWIGEAETKIYSWSMSDIKQLRKEC-RLKLP 116 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + +W + R + + + A L + + H Sbjct: 117 DFDVTWLDT----------RWVDLQQEFDDRLGLHNSLALKHALGAMGRRF---EGSQHS 163 Query: 177 AKADVYATLALVWLIREKKP 196 A AD T A++ L+++ Sbjct: 164 ALADAVNTSAVLALMQDDAK 183 >gi|307139287|ref|ZP_07498643.1| conserved hypothetical plasmid protein [Escherichia coli H736] gi|331643276|ref|ZP_08344408.1| exonuclease superfamily [Escherichia coli H736] gi|331037503|gb|EGI09726.1| exonuclease superfamily [Escherichia coli H736] Length = 282 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 26/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + +R++ + +I +N + + W Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184 + + +++ Y + + L A G AH A AD Sbjct: 210 LTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGLAHSAIADARMA 259 Query: 185 LALVWLIREKK 195 +V I Sbjct: 260 AGVVNAIAAYH 270 >gi|296270642|ref|YP_003653274.1| exonuclease RNase T and DNA polymerase III [Thermobispora bispora DSM 43833] gi|296093429|gb|ADG89381.1| Exonuclease RNase T and DNA polymerase III [Thermobispora bispora DSM 43833] Length = 198 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 9/149 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 MT+ V D E G D+ D + A + D + ++ KP + L Sbjct: 1 MTDPLVWIDCEMTGLDLTRDALVEVACIVTDGELNPVDEGVAVVIKPPPETLEQMSDVVR 60 Query: 59 FIT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + EAE I + N+I D + Sbjct: 61 EMHTASGLLDELAGGVTLAEAEATVLGYIRSHVPEAKKAPLCGNSIATDRAFL--ARDMP 118 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D+Y S L + Sbjct: 119 LVDAYLHYRMVDVSTIKELARRWYPRVYF 147 >gi|225420339|ref|ZP_03762642.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme DSM 15981] gi|225041025|gb|EEG51271.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme DSM 15981] Length = 323 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/256 (10%), Positives = 71/256 (27%), Gaps = 36/256 (14%) Query: 5 FVIYDYETFGRDVA--LD-------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++ D E + + D + V++D + + +P Sbjct: 3 YIVLDLE-WNQSPNGKEDSVEHLPFEIIEIGAVKLDEGFRQKGEFH-RLIRPQVYRQLHF 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + +T + + G + R +F T D + Sbjct: 61 KISEVTHMDMGELKHRGKNFKQVMR---EFLDWCGTEYCFCTWGSMDLTELQRNMDYFKV 117 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + +D+ + Y DG L GI Sbjct: 118 P---NPFPRPLLYYDVQKLYCMEY------------GDGKNKPSLDQAVQERGIRQERPF 162 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF---- 230 H A +D + T ++ ++ ++ + + + +R + + ++ +VS F Sbjct: 163 HRALSDAFYTGRVLAVMDFEQVRPYISVDYFRLPRNKEEEVSLRFPDYAKYVSRPFENRE 222 Query: 231 --GASRSNTALIAPVA 244 ++ ++ P Sbjct: 223 EAMKDKTVNDMVCPYC 238 >gi|168183921|ref|ZP_02618585.1| exonuclease family protein [Clostridium botulinum Bf] gi|237795808|ref|YP_002863360.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|182672939|gb|EDT84900.1| exonuclease family protein [Clostridium botulinum Bf] gi|229261869|gb|ACQ52902.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 253 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 35/234 (14%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q ++++ + I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + E + +F + + + + + ++Y Sbjct: 58 PFVKNLTNLTMDSLNKAN-TFREVYKDFLKFLNKDKNILCIWGMTDMKELFRNIVYYELD 116 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +S + N + A++ + +P + S ++ L + ++ + Sbjct: 117 TESIPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160 Query: 175 HDAKADVYATLALVWLIREKKPKLF-----EYLYDYRNKNQLRKLIDIQNMTPL 223 H+A D + T + I +K K YRNKN K+ + Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIYKPTNNSTTYRNKNTKTKIDTVSLFKQF 214 >gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895] gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895] Length = 220 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 64/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V V + + +P D P+A+ I I+ Sbjct: 4 VIDTETCGL---QGGIVEIASVDV-VAGRIV-NPMSHLVRP--DRPISPQAMAIHRISES 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + H + +N FD W Sbjct: 57 MVADKPWIE-DIIPLYH------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMVDITGRPALLTT--FTFGKYRGKAVSEVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + + L Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215 >gi|62901864|gb|AAY18883.1| CGI-114 [synthetic construct] Length = 229 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 31 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 90 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 91 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 150 Query: 114 FYDSYRW 120 + Sbjct: 151 MKHLHYR 157 >gi|297625330|ref|YP_003687093.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921095|emb|CBL55640.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 522 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 20/161 (12%) Query: 5 FVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV D+ET G Q A VRV ++ P+ D E ++ Sbjct: 348 FVAADFETANRSSGVSA-----CQIALVRV-ESGRVVDRFNTLLKPPSGFD--DFEFTYL 399 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN--IFY--RNFYD 116 GI+ + + I F + +N FD R F+ R+ D Sbjct: 400 HGISARDTRTAP-SWPDIIPAIRGF---AGDATVYAHNAPFDSRVWRQLDEFFHTRSLPD 455 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 + S+ LD R + A S Sbjct: 456 HFFCSYLTARRMMPGLDNYRLPTVLERCAPHFVLDHHKADS 496 >gi|296119586|ref|ZP_06838144.1| exonuclease [Corynebacterium ammoniagenes DSM 20306] gi|295967469|gb|EFG80736.1| exonuclease [Corynebacterium ammoniagenes DSM 20306] Length = 212 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 51/195 (26%), Gaps = 23/195 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D ET G + V + ++ + V E+ I + Sbjct: 29 FLAVDMETTGLKPKQHQIVSIGWVPIKNNRVQLSGAQYVLIKGVDVG-----ESATIHHL 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E I + + + + + + + + + Sbjct: 84 RDSDLEKG----MELEEGIDKLTADLRGKAMLAHFAPIETSFYSHACKKLWGKEPHLE-- 137 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +A ++ S +L + G+ + +H+A D A Sbjct: 138 -----------VVDTFALERRHMERMSTYPRGEDLRLSRVRARYGLPNYPSHNALTDAIA 186 Query: 184 TLALVWLIREKKPKL 198 L + +P Sbjct: 187 CAELYLAMAAHRPPT 201 >gi|77460172|ref|YP_349679.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77384175|gb|ABA75688.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 180 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E T G + + VDR + + + F KP L P Sbjct: 1 MPHWLVIDLEATTDEGGWPVTEMEIIEIGATLVDRAGREQDHFQ-RFVKPTRRPLLTPFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116 +T IT +E ++ T + G+ + +D + R D Sbjct: 60 RELTHITQANI-DAAQPLSEVWPAFERWLGQHQTRLEGWASWGDYDRKQLLQEWQRLQLD 118 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 S + N + R +G L LA H Sbjct: 119 SALSRVPHMNLKQRFAKARRLERPLGLNG----------------ALQLAGMQFTGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALEDARNTARLL 174 >gi|29654993|ref|NP_820685.1| ribonuclease T [Coxiella burnetii RSA 493] gi|153207536|ref|ZP_01946219.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177'] gi|154706868|ref|YP_001423724.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111] gi|165918353|ref|ZP_02218439.1| ribonuclease T [Coxiella burnetii RSA 334] gi|212217974|ref|YP_002304761.1| ribonuclease T [Coxiella burnetii CbuK_Q154] gi|29542262|gb|AAO91199.1| ribonuclease T [Coxiella burnetii RSA 493] gi|120576504|gb|EAX33128.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177'] gi|154356154|gb|ABS77616.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111] gi|165918003|gb|EDR36607.1| ribonuclease T [Coxiella burnetii RSA 334] gi|212012236|gb|ACJ19616.1| ribonuclease T [Coxiella burnetii CbuK_Q154] Length = 224 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + + + A V V+ E P + DP ++ IT Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R V E + + + F ++ +N FD + + R Sbjct: 81 IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L ++ + A + AH Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALR-----------------AANLPFDKKEAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D L I + Sbjct: 184 AIYDAKCAAELFCKITNQ 201 >gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125] gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Pseudoalteromonas haloplanktis TAC125] Length = 232 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D I+ T F +P D + A+ G Sbjct: 19 VVIDVETGGFNKDTDALLEIAVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFNG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P ALR V E + I + ++ +N FD + RN Sbjct: 79 IDPFSALRGAVPEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERN--- 135 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + + + + +D + L A GIE N A Sbjct: 136 NIKRTPFHPFVSFDTTSLA----------------GLALGQTVLAKACRAAGIEFDNSQA 179 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L LI + Sbjct: 180 HSALYDTERTAELYCLIVNR 199 >gi|197337117|ref|YP_002157942.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11] gi|197314369|gb|ACH63818.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11] Length = 259 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 29/198 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV--------DRQWEKIESTEVFFCKPADDYLPDPE 56 F + D+ET G + D V + Q I + + D Sbjct: 66 FTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAE-DEGEERDHT 124 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A + I P++ + G+ + FFS + I+ + + + F Sbjct: 125 ARSLHHILPEQ-QKMGISLEKAME---CFFSNLPSNILVVHGATIEQRFLEQFFLSLQLP 180 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + W LD +R ++ F+L L + AH Sbjct: 181 NLPMIW---------LDTLRIEQ-------NTIQQNRYQRDFRLFSLRRQYKLPDYPAHH 224 Query: 177 AKADVYATLALVWLIREK 194 A D +T L +++ Sbjct: 225 ALVDAISTAELFLAQKKR 242 >gi|52425567|ref|YP_088704.1| oligoribonuclease [Mannheimia succiniciproducens MBEL55E] gi|59798011|sp|Q65SE1|ORN_MANSM RecName: Full=Oligoribonuclease gi|52307619|gb|AAU38119.1| Orn protein [Mannheimia succiniciproducens MBEL55E] Length = 186 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 15/130 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D +R + A + D+ + ++ K +D + Sbjct: 6 QNLIWIDLEMTGLDPENERIIEIATIVTDKDLNILAEGPVLAVHQSDELLAKMSDWCIKT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A G+ + + E + F I N++ D + Sbjct: 66 HSA---NGL-VDRVKASKLTERAAELQTIDFLKKWVPKGASPICGNSVAQDKRFLFKYMP 121 Query: 112 RNFYDSYRWS 121 + Sbjct: 122 ELADYFHYRH 131 >gi|317048373|ref|YP_004116021.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b] gi|316949990|gb|ADU69465.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b] Length = 222 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 56/225 (24%), Gaps = 38/225 (16%) Query: 2 TNHFV-IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + + D ET + A V + + + F A+ I Sbjct: 1 MSTIIRVIDTETTSF---EGGICELASVDI-VEGKICNPMSDF---VKPPEPITVGAMAI 53 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 IT + R + +N FD R Sbjct: 54 HHITNDMVTDAP-PIGDVIDR------YLGADVYVAHNAAFD---------RPKLPQITA 97 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 W + ++ P+ ++ + + + E ++AH A D Sbjct: 98 PW---------ICTLKLARKLYPELESHTNQY-----LRYHFMLDVDVPEGLHAHRALYD 143 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 Y T AL+ + + D ++ L + Sbjct: 144 CYVTAALLIRLNRDVQLTIAQMRDISSRPSLLHTMRFGKHKGKTF 188 >gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Bf] gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str. 657] gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Bf] gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Ba4 str. 657] Length = 195 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 51/192 (26%), Gaps = 10/192 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + Q D + E D + A I Sbjct: 1 MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAI 56 Query: 61 TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G + +K G + + I N I +N + + N + Sbjct: 57 HGFSVEKLKILSKGKKFKDLASEISSDLK--NGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114 Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + R P + + L+ + V HD Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174 Query: 177 AKADVYATLALV 188 A+ DV A ++ Sbjct: 175 ARYDVAALVSCY 186 >gi|319426754|gb|ADV54828.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens 200] Length = 223 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 20/172 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D E G D D+ V ++ +E + + ++ I GI Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQQKLVQIRGSV---GQSATIHGILDNHL 97 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ +E + F + ++ ++ D + + + Sbjct: 98 VQAVTIEDAMAW----FIAKTRGRVLVAHHSPLDCRFLQQDILA------IYHQAVFLPS 147 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + I+ S +L G+ +AH A D Sbjct: 148 IDTLMLEKRRLLRGHHAIK-------KGSLRLGACRERYGLPVYSAHSALTD 192 >gi|94988157|ref|YP_596258.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS9429] gi|94992044|ref|YP_600143.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS2096] gi|94541665|gb|ABF31714.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS9429] gi|94545552|gb|ABF35599.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS2096] Length = 833 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + I+S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088] gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088] Length = 211 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 58/194 (29%), Gaps = 30/194 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A VR++ E + T P + + A+ TG Sbjct: 20 VIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPFEGANLEASALEFTG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R+ + EA+ I + ++ +N FD + R Sbjct: 80 IDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAAVERTGLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 N + D + L L GIE N A Sbjct: 140 ------RNPFHPFSYFDTATLAGLAFGQTV-------------LAKACLQAGIEFDNKAA 180 Query: 175 HDAKADVYATLALV 188 H A D T L Sbjct: 181 HSAAYDADRTAHLF 194 >gi|310816220|ref|YP_003964184.1| Exonuclease [Ketogulonicigenium vulgare Y25] gi|308754955|gb|ADO42884.1| Exonuclease [Ketogulonicigenium vulgare Y25] Length = 200 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 27/200 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET + Q V IE+ P DD++ + A I GI Sbjct: 19 FLALDVET--ANYRAHSICQIGIAAVRPD-NTIETWTTLI-DPEDDFVANNIA--IHGIR 72 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + A+ R++ S + + + FD R + D W+W Sbjct: 73 PEAVVGAPR-FAQAFRQLSPVLSRH----LIFQHSSFDSRCFAAAAERAYLDPPEWTWS- 126 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + R + WP L +L A G++ HDA D A Sbjct: 127 -----DSVTLARRV---------WPELKGAGGGHGLGNLKKALGLQF-RHHDAGEDARAA 171 Query: 185 LALVWLIREKKPKLFEYLYD 204 +V F L Sbjct: 172 AEVVLRAEAHTGLDFTALIK 191 >gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 3502] gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 19397] gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. Hall] gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 19397] gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. Hall] gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402 065] Length = 195 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 10/197 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + Q D + E D + A I Sbjct: 1 MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAI 56 Query: 61 TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G + +K G + + I + I +N + + N + Sbjct: 57 HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114 Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + R P + + L+ + V HD Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174 Query: 177 AKADVYATLALVWLIRE 193 A+ DV A ++ + + Sbjct: 175 ARYDVAALVSCYYRAKR 191 >gi|4929697|gb|AAD34109.1|AF151872_1 CGI-114 protein [Homo sapiens] Length = 205 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D+ + A + D + K D+ L Sbjct: 7 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 67 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 126 Query: 114 FYDSYRW 120 + Sbjct: 127 MKHLHYR 133 >gi|289665843|ref|ZP_06487424.1| oligoribonuclease [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669068|ref|ZP_06490143.1| oligoribonuclease [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 194 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 42/204 (20%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A + D Q + E+ P + EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 + Q+ L V A+ + F S + N+I D + Sbjct: 65 NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMP 124 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R + D+ + ++P ANG Sbjct: 125 RLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANGFAK 157 Query: 172 VNAHDAKADVYATLALVWLIREKK 195 +AH A +DV ++ + R+ Sbjct: 158 SSAHTALSDVRDSIDELRHYRQFM 181 >gi|158284602|ref|XP_307582.4| Anopheles gambiae str. PEST AGAP012804-PA [Anopheles gambiae str. PEST] gi|157020970|gb|EAA03378.5| AGAP012804-PA [Anopheles gambiae str. PEST] Length = 228 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 23/133 (17%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60 + V D E G DV DR + A + D + I + + + P+AV Sbjct: 44 QNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAK--------GPNIIINEPDAVLAG 95 Query: 61 --------TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSR 107 + + + + R + F C + N+I D + Sbjct: 96 MNSWCKDHHSKSGLIEAVKKSTYSVDQAERDVLDFVKKYCPERKCPMAGNSIYMDRLFIM 155 Query: 108 NIFYRNFYDSYRW 120 + Sbjct: 156 KYMPTLNEYLHYR 168 >gi|270158079|ref|ZP_06186736.1| oligoribonuclease [Legionella longbeachae D-4968] gi|289163655|ref|YP_003453793.1| oligoribonuclease [Legionella longbeachae NSW150] gi|269990104|gb|EEZ96358.1| oligoribonuclease [Legionella longbeachae D-4968] gi|288856828|emb|CBJ10639.1| oligoribonuclease [Legionella longbeachae NSW150] Length = 185 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 11/118 (9%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDP 55 M N+ + D E G + DR + A V D I + K D + Sbjct: 1 MKNNQNLIWIDLEMTGLNPEQDRIIELATVVTDPHLNIIAEGPVFAISQSKVLLDGMDS- 59 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRN 108 G + ++ L V EA+ +R +F + N+I D + Sbjct: 60 WNTKQHGQSGLVKRVLESDVNEAQAEKRTIEFLKQYLDKGKSPMCGNSICQDRRFLYK 117 >gi|255020848|ref|ZP_05292904.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756] gi|254969639|gb|EET27145.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756] Length = 200 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 47/174 (27%), Gaps = 17/174 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 T V D E G + D+ + A + D + + V ++ L D Sbjct: 5 TQRLVWIDLEMTGLNPERDQILEIASIVTDNELRVLSEGPVLAVHQSEAVLAAMDDWNQR 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + + F P T + N++ D + + R Sbjct: 65 THGNSGLVQRVRESRLDLGAVEAQTLDFLQAHVQPGTAPLCGNSVCQDRRFLARLMPRLE 124 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + L+DV P L D+ + G Sbjct: 125 RFLHYR----------LIDVSTIKELAYRWYPSLPRYPKTERHEALADIRESIG 168 >gi|297199883|ref|ZP_06917280.1| oligoribonuclease [Streptomyces sviceus ATCC 29083] gi|197710348|gb|EDY54382.1| oligoribonuclease [Streptomyces sviceus ATCC 29083] Length = 200 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDQALETMPEVVR 60 Query: 60 ----ITGITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 ++G+ + A + +AE + + P + N++ D + Sbjct: 61 QMHTVSGLLDELAGGTTLADAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGF-------L 113 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N + Sbjct: 114 LRDMPTLEDYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPDKNG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIRESIAELRYYRE 174 >gi|121606153|ref|YP_983482.1| exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] gi|120595122|gb|ABM38561.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] Length = 550 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 49/184 (26%), Gaps = 25/184 (13%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V+ D ET G + R+ + S F + P + + G T Sbjct: 7 VLIDTETTGLTVPIF--VVELGAQRMRGWLPE-GSP--FRRLLNQNLDIPPASSRVHGYT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + RDG A R + ++ +N D + R Sbjct: 62 REILERDGEPAAVVYRDFAAY--AGGLPVVAFNLEYDLDEVLLPEWKRLGITP------- 112 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 M + Q A + KLQ L + AH A DV Sbjct: 113 ----------MVTAGFCALRLAQRLLDPVPAGNCKLQTLRQYYRLPERGAHTALGDVETV 162 Query: 185 LALV 188 L+ Sbjct: 163 ADLL 166 >gi|328906095|gb|EGG25870.1| exonuclease [Propionibacterium sp. P08] Length = 207 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 36/198 (18%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV D+ET G Q A V+V ++ P E ++ Sbjct: 37 FVAVDFETANRMGGVSA-----CQLAMVKV-HDGHIVDRLNTLIRPPEGWD--SFEFTYL 88 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A + + QF + + +N FD R D Y Sbjct: 89 HGISAADVVDAPL-WANIADGVSQFV---DGATVYAHNAAFDSRVWRQ------LDEYFG 138 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179 + + + + G ++KL + A + N H A + Sbjct: 139 TTTLPSPFFCSYRTAQ-------------RLIPGLPNYKLPTVLNACAPTYRLNHHRADS 185 Query: 180 DVYATLALVWLIREKKPK 197 D A +V ++ Sbjct: 186 DAEACALIVCQLQRLADD 203 >gi|322514990|ref|ZP_08068002.1| oligoribonuclease [Actinobacillus ureae ATCC 25976] gi|322119043|gb|EFX91207.1| oligoribonuclease [Actinobacillus ureae ATCC 25976] Length = 183 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + + D E G D +R + A + D+ + V DD L + Sbjct: 6 SQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLTVHQPDDLLNKMSDWCIK 65 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + E + F I N++ D + Sbjct: 66 THTENGL-IERVKQSKLTERAVELQTLDFLKRWLPKGASPICGNSVPQDKRFLYKYMPDL 124 Query: 114 FYDSYRWS 121 + Sbjct: 125 ADYFHYRH 132 >gi|313835961|gb|EFS73675.1| exonuclease [Propionibacterium acnes HL037PA2] gi|314927196|gb|EFS91027.1| exonuclease [Propionibacterium acnes HL044PA1] gi|314970727|gb|EFT14825.1| exonuclease [Propionibacterium acnes HL037PA3] Length = 184 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 36/198 (18%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV D+ET G Q A V+V ++ P E ++ Sbjct: 14 FVAVDFETANRMGGVSA-----CQLAMVKV-HDGHIVDRLNTLIRPPEGWD--SFEFTYL 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ + + A + + QF + + +N FD R D Y Sbjct: 66 HGISAADVVDAPL-WANIADGVSQFV---DGATVYAHNAAFDSRVWRQ------LDEYFG 115 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179 + + + + G ++KL + A + N H A + Sbjct: 116 TTTLPSPFFCSYRTAQ-------------RLIPGLPNYKLPTVLNACAPTYRLNHHRADS 162 Query: 180 DVYATLALVWLIREKKPK 197 D A +V ++ Sbjct: 163 DAEACALIVCQLQRLADD 180 >gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD] gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD] Length = 261 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 4/110 (3%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G ++ D V + + +P+A + G T + Sbjct: 34 FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVS-TWLINPHQPMNPKASEVNGFTDEY 92 Query: 68 ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + E EF R N ++ YN ++ + Sbjct: 93 LQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNAPFDIAMLRHDLKRWHL 142 >gi|240169372|ref|ZP_04748031.1| hypothetical protein MkanA1_08668 [Mycobacterium kansasii ATCC 12478] Length = 1746 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 37/190 (19%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-VFFCKPADDYLPDPEAVFIT 61 + + D ET G D A D + A V +D + + Sbjct: 102 DRIAVLDIETTGLDSAADFVCELALVGLD------GTPLANIMVQLPAGVA--------- 146 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 P ++ + R + + + +IG+N + FD + R D Sbjct: 147 --RPNESFGAEFPLDDALRLLEAHLAEID-LVIGHNLLEFDRPFLEKAAQRAGVDPPHLP 203 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 S D L + + + L DL I H H A AD Sbjct: 204 -----SCVDSLHLATLVDV-------------AMPNRSLADLTHQFNIVHQEPHRALADA 245 Query: 182 YATLALVWLI 191 AT +V + Sbjct: 246 TATAGVVRAM 255 >gi|78065664|ref|YP_368433.1| oligoribonuclease [Burkholderia sp. 383] gi|123569006|sp|Q39IC7|ORN_BURS3 RecName: Full=Oligoribonuclease gi|77966409|gb|ABB07789.1| Exonuclease [Burkholderia sp. 383] Length = 206 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G D DR + A V + + VF +D+ L D Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYS-----RNIFY 111 G + + V EAE + ++ F + P + N+I D + + Sbjct: 79 GRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERF 138 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW + A D ++ L Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191 >gi|323191668|gb|EFZ76924.1| exonuclease family protein [Escherichia coli RN587/1] Length = 153 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 11/108 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 14 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 Q + + +R++ +I +N + + Sbjct: 66 QALCGAPL-WTDVARQLRHAI--GGRPVIIFNARFDIRILKQTAAAHS 110 >gi|283456582|ref|YP_003361146.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283103216|gb|ADB10322.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 439 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 21/212 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIE--STEVFFCKPADDYLPDPEAVFI 60 V D ET G D D + + + + + Sbjct: 225 TLVGIDLETTGTSPNQDYIIDAGWELYDMATGRASDAQRHTYGLSRQRELRGIGRDITSL 284 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT V E + + + I+ +N RF+ ++ + Y Sbjct: 285 TGITTADVAGH-VPFQEDADAQRTMMTALDGRIMVAHNARFEQFFLIGNC-----EGYAE 338 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-------- 172 + +G R + A ++ + D + L D H Sbjct: 339 ALRDGRIRIIDSMKV-AHHSEDARAQGFRLDDYARRNHALDDDRDMQVPAHDGGLIRLDQ 397 Query: 173 ---NAHDAKADVYATLALVWLIREKKPKLFEY 201 H D + + + +E Sbjct: 398 GERERHLGLEDAHIMMRAIRNQLGVLRSRYER 429 >gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 1246 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 86/298 (28%), Gaps = 45/298 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + + +T G DR + V + + A I GI+ Sbjct: 849 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTL---INPRRSFSDSA--IHGIS 902 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + V E E + I + I+ ++ F F R+ + Sbjct: 903 ERMTVATPVFE-EVADDIAELLDRR---ILIAHDAPFVSKQLGREFSRSNVKAIHL---- 954 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + + G++ L A G+++ ++H A D AT Sbjct: 955 ---------------NDGYCTMSHSPKLLGSSGRSLSSALDAAGLKNEHSHCALDDAMAT 999 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 L+ ++ K + +H +R + + Sbjct: 1000 ANLLNVLLH--------------KGAIAAKYPAMQFVSAIHPRRTPTVTREFVEMTESTS 1045 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT--SHDELKGLVPVPIKEVHLNKC 300 W + D + + Q LD V L + + T D K V + + + +N+ Sbjct: 1046 WISQIIDQLPTSGEADIDEFMQLLDIVMLDREVSTHERLDLYKQAVNLGLSQQDINRA 1103 >gi|171742315|ref|ZP_02918122.1| hypothetical protein BIFDEN_01424 [Bifidobacterium dentium ATCC 27678] gi|171277929|gb|EDT45590.1| hypothetical protein BIFDEN_01424 [Bifidobacterium dentium ATCC 27678] Length = 445 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 21/212 (9%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIE--STEVFFCKPADDYLPDPEAVFI 60 V D ET G D D + + + + + Sbjct: 231 TLVGIDLETTGTSPNQDYIIDAGWELYDMATGRASDAQRHTYGLSRQRELRGIGRDITSL 290 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT V E + + + I+ +N RF+ ++ + Y Sbjct: 291 TGITTADVAGH-VPFQEDADAQRTMMTALDGRIMVAHNARFEQFFLIGNC-----EGYAE 344 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-------- 172 + +G R + A ++ + D + L D H Sbjct: 345 ALRDGRIRIIDSMKV-AHHSEDARAQGFRLDDYARRNHALDDDRDMQVPAHDGGLIRLDQ 403 Query: 173 ---NAHDAKADVYATLALVWLIREKKPKLFEY 201 H D + + + +E Sbjct: 404 GERERHLGLEDAHIMMRAIRNQLGVLRSRYER 435 >gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium leprae TN] gi|221229613|ref|YP_002503029.1| oligoribonuclease [Mycobacterium leprae Br4923] gi|7227905|sp|O07708|ORN_MYCLE RecName: Full=Oligoribonuclease gi|2222713|emb|CAB09908.1| hypothetical protein MLCL383.34c [Mycobacterium leprae] gi|13092683|emb|CAC29935.1| putative oligoribonuclease [Mycobacterium leprae] gi|219932720|emb|CAR70520.1| putative oligoribonuclease [Mycobacterium leprae Br4923] Length = 215 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 26/158 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D+ + A + D + D + ++ + Sbjct: 1 MHDELVWIDCEMTGLDLGSDQLIEIAALVTDADLNILGDGV--------DVVIHIDSTAL 52 Query: 61 TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + + R G++ E+ I+ P T + N+I D Sbjct: 53 SSMIDVVAEMHSRSGLINEVESSIVDLVTAESIVLDYINNHVKQPKTAPLAGNSIATDRS 112 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 + DS+ S L + Sbjct: 113 FI--ARDMPTLDSFLHYRMIDVSSIKELCRRWYPRIYF 148 >gi|152973034|ref|YP_001338180.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166216264|sp|A6TH79|ORN_KLEP7 RecName: Full=Oligoribonuclease gi|150957883|gb|ABR79913.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 181 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + +D L D V Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ + V E + F I N+I D + + Sbjct: 66 HTGSGL-VDRVKASTVSEHDAELATIDFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AYFHYR 130 >gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius UCC118] gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius ATCC 11741] gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius UCC118] gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius ATCC 11741] Length = 177 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 28/190 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + A V + + + D + + GI Sbjct: 2 NFVAIDFET--ANPKRYSACSLALTVV-KNNQIADQFYSL---IKPDTDFSWRNIQVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T ++ E I FF+ N +I +N FD +D Sbjct: 56 TEKQVQNAP-SFPELWPHIQNFFTPNN--LIVAHNASFDSSVLLRT---------LEHYD 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD +R F D KL + I+ + H+A D A Sbjct: 104 ITLPHYQLLDTLRTSKKFFKDFEN----------HKLDTICNNLNIDLKHHHNALFDSTA 153 Query: 184 TLALVWLIRE 193 ++ Sbjct: 154 CAEILLYQAN 163 >gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 182 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + D A V + + + V I GI Sbjct: 6 NFVAMDFET--ANAKRDSACSLALTVVRNN-QISDEFYTL---IKPESDFFWRNVQIHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + I FF ++ +N FD RN Sbjct: 60 HEADVADAPK-FPDVWQHIAPFFQRD--RLVIAHNAPFDIGVLRNTLAHYGI-------- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + +D ++ F P+ + KL + A I+ + H+A D A Sbjct: 109 -SAPEYLSMDTVKTSQRFYPEL----------PNHKLDTVCQALDIDLQHHHNALDDSLA 157 Query: 184 TLALV 188 ++ Sbjct: 158 CANIL 162 >gi|325921138|ref|ZP_08183009.1| RNAse T [Xanthomonas gardneri ATCC 19865] gi|325548410|gb|EGD19393.1| RNAse T [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 58/213 (27%), Gaps = 43/213 (20%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-----VFFCKPADD 50 M+ F V+ D ET G D + A V ++ E PA Sbjct: 18 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAE--GRFFPGDTASAHLVPAPG 75 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIR 100 DP+++ ITGI L A+ + I+ +N Sbjct: 76 LEIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAH 131 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 FD + R + + S +D + + Y G T Sbjct: 132 FDLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLAR 174 Query: 161 QDLALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 175 AAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 >gi|228472478|ref|ZP_04057240.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga gingivalis ATCC 33624] gi|228276163|gb|EEK14910.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga gingivalis ATCC 33624] Length = 184 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 7/138 (5%) Query: 1 MTNHFVIYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 MTN +I D E G + + +D ++ KP P Sbjct: 1 MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEVSDNRGILVKPT-HSKISP 59 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T +TP+ R+GV E + + + + Y N + + R Sbjct: 60 FCTQLTTLTPELVAREGVSFEEALQILKKEYQAYQYTWASYGNYD-RNMLQKQCALRKLP 118 Query: 116 DSYRWSWDNGNSRWDLLD 133 R N R+ + Sbjct: 119 YPMRNEHINVKERFQEVT 136 >gi|187932518|ref|YP_001886209.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] gi|187720671|gb|ACD21892.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] Length = 243 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 61/213 (28%), Gaps = 27/213 (12%) Query: 4 HFVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 ++++YD E F + D Q V+++ + E + + KP P Sbjct: 2 NYIVYDLE-FNHQYSKDNKVSNLTFEIIQIGAVKLNNKLEIVSTFN-RLIKPTVHTEIHP 59 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T IT + + ++ +F + + +N+ + N Sbjct: 60 FIKDLTQITTEMVNSEKH-FSDVYNDFIKFIGNKEFTVCIW-GTSDIKELLKNVKFHNL- 116 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 D L + + I+ P + N H Sbjct: 117 -----------KEIDDLRKYIDVQNLASKYIKTPKGTKVGLK---TAIEFFNLPIEKEFH 162 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 DA D Y T + + K K Y Y + Sbjct: 163 DAFNDAYYTAQIFKKLYTSKIKSSIYNNPYSKR 195 >gi|170760682|ref|YP_001787078.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A3 str. Loch Maree] gi|169407671|gb|ACA56082.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A3 str. Loch Maree] Length = 195 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 10/197 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + Q D ++ E D + A I Sbjct: 1 MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFKGEEKVSFAKNFFFDVDYIEESAESI 56 Query: 61 TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G + +K G + + I + I +N + + N + Sbjct: 57 HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114 Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + R P + + L+ + V HD Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174 Query: 177 AKADVYATLALVWLIRE 193 A+ DV A ++ + + Sbjct: 175 ARYDVAALVSCYYRAKR 191 >gi|150260590|ref|ZP_01917318.1| oligoribonuclease [Yersinia pestis CA88-4125] gi|161484882|ref|NP_667960.2| oligoribonuclease [Yersinia pestis KIM 10] gi|161511446|ref|NP_991914.2| oligoribonuclease [Yersinia pestis biovar Microtus str. 91001] gi|162419396|ref|YP_001605286.1| oligoribonuclease [Yersinia pestis Angola] gi|165926762|ref|ZP_02222594.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016] gi|165936480|ref|ZP_02225048.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|166011882|ref|ZP_02232780.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001] gi|166213971|ref|ZP_02240006.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004] gi|167400566|ref|ZP_02306075.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418918|ref|ZP_02310671.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423542|ref|ZP_02315295.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927569|ref|YP_002345444.1| oligoribonuclease [Yersinia pestis CO92] gi|229358039|ref|YP_653824.2| oligoribonuclease [Yersinia pestis Antiqua] gi|229559847|ref|YP_649232.2| oligoribonuclease [Yersinia pestis Nepal516] gi|229836625|ref|ZP_04456791.1| oligoribonuclease [Yersinia pestis Pestoides A] gi|229840237|ref|ZP_04460396.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842315|ref|ZP_04462470.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India 195] gi|229903946|ref|ZP_04519059.1| oligoribonuclease [Yersinia pestis Nepal516] gi|270489066|ref|ZP_06206140.1| exonuclease [Yersinia pestis KIM D27] gi|294502475|ref|YP_003566537.1| oligoribonuclease [Yersinia pestis Z176003] gi|20138838|sp|Q8ZIW9|ORN_YERPE RecName: Full=Oligoribonuclease gi|115346180|emb|CAL19048.1| oligoribonuclease [Yersinia pestis CO92] gi|149289998|gb|EDM40075.1| oligoribonuclease [Yersinia pestis CA88-4125] gi|162352211|gb|ABX86159.1| oligoribonuclease [Yersinia pestis Angola] gi|165915596|gb|EDR34205.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|165921385|gb|EDR38609.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016] gi|165989241|gb|EDR41542.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001] gi|166204766|gb|EDR49246.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004] gi|166962912|gb|EDR58933.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049934|gb|EDR61342.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057712|gb|EDR67458.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679716|gb|EEO75819.1| oligoribonuclease [Yersinia pestis Nepal516] gi|229690625|gb|EEO82679.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India 195] gi|229696603|gb|EEO86650.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706309|gb|EEO92317.1| oligoribonuclease [Yersinia pestis Pestoides A] gi|262360505|gb|ACY57226.1| oligoribonuclease [Yersinia pestis D106004] gi|262364452|gb|ACY61009.1| oligoribonuclease [Yersinia pestis D182038] gi|270337570|gb|EFA48347.1| exonuclease [Yersinia pestis KIM D27] gi|294352934|gb|ADE63275.1| oligoribonuclease [Yersinia pestis Z176003] gi|320013769|gb|ADV97340.1| oligoribonuclease [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 181 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V + + L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 65 THTGSGL-VERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|329914413|ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480] gi|327545130|gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480] Length = 201 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G D DR + A V D + VF +D L D Sbjct: 27 NLVWLDMEMTGLDPETDRIIEVAVVVTDSNLNILGQGPVFAIHQSDAALDGMDNWNKGTH 86 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ V EA+ + F + N+I D + + Sbjct: 87 GRSGLIERVKASTVTEADAEAALIAFLKDYVPAGKSPMCGNSICQDRRFMARGMPKLEAF 146 Query: 117 SYRW 120 + Sbjct: 147 FHYR 150 >gi|293393221|ref|ZP_06637536.1| oligoribonuclease [Serratia odorifera DSM 4582] gi|291424367|gb|EFE97581.1| oligoribonuclease [Serratia odorifera DSM 4582] Length = 181 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus iners AB-1] gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] Length = 177 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + D A V V + I+S D + I GI Sbjct: 2 NFTAMDFET--ANRHYDSACSLALVLVRDN-KIIDSFYTV---INPQMPFDKNNIKIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E +I F ++ +N RFD + + Sbjct: 56 TANDVKDAP-TMDEVWPKIRLLFQ--PGMLVVAHNARFDCNVMKKSLKKY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ Y + +++L ++ I+ + H+A +D A Sbjct: 103 ---------NIAEPHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHHHNALSDSEA 153 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 154 CAEILIKQNQQ 164 >gi|157963361|ref|YP_001503395.1| oligoribonuclease [Shewanella pealeana ATCC 700345] gi|157848361|gb|ABV88860.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] Length = 181 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G + +DR + A + D++ I VF +D+ L D Sbjct: 6 NNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + + E + F S + N+I D + Sbjct: 66 HGQSGLVDRVRASTINEEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYMPELEG 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|50955048|ref|YP_062336.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] gi|81826639|sp|Q6AEG5|ORN_LEIXX RecName: Full=Oligoribonuclease gi|50951530|gb|AAT89231.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 23/134 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ V D E G D+A+D + A V D ++ P + P+A + Sbjct: 5 SDRLVWIDCEMTGLDLAVDELVEIAVVITDFDLNVLD--------PGLSIVIKPDASALD 56 Query: 62 GITP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106 + + G++ E E + +F T + N I D + Sbjct: 57 NMNDFVREMHTTSGLIEEIPGGVSLAEAEYEALEYVLRFAPAARTAPLAGNTIGTDRMFL 116 Query: 107 RNIFYRNFYDSYRW 120 R + Sbjct: 117 AKYMPRLDTHLHYR 130 >gi|292898154|ref|YP_003537523.1| oligoribonuclease [Erwinia amylovora ATCC 49946] gi|291198002|emb|CBJ45104.1| oligoribonuclease [Erwinia amylovora ATCC 49946] Length = 187 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAE 42 >gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium sp. MCS] gi|119869745|ref|YP_939697.1| oligoribonuclease [Mycobacterium sp. KMS] gi|126436222|ref|YP_001071913.1| oligoribonuclease [Mycobacterium sp. JLS] gi|122976715|sp|Q1B5T7|ORN_MYCSS RecName: Full=Oligoribonuclease gi|166216269|sp|A3Q2P5|ORN_MYCSJ RecName: Full=Oligoribonuclease gi|166216270|sp|A1UJ99|ORN_MYCSK RecName: Full=Oligoribonuclease gi|108771025|gb|ABG09747.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. MCS] gi|119695834|gb|ABL92907.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. KMS] gi|126236022|gb|ABN99422.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. JLS] Length = 215 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 54/208 (25%), Gaps = 44/208 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D + A + D + A D D + Sbjct: 1 MRDELVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGDGLDVVIH-APDEALDAMIPVV 59 Query: 61 TGITPQKALRDGVVE-----------AE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 T + R G++E AE I T + N+I D + Sbjct: 60 T----EMHTRSGLIEEVRASTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIA 115 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 + D Y S L + Sbjct: 116 RDMAK--LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------ 149 Query: 168 GIEHVNAHDAKADVYATLALVWLIREKK 195 E AH A AD++ ++ + R+ Sbjct: 150 QPEKGLAHRALADIHESIRELKYYRQTA 177 >gi|306832202|ref|ZP_07465356.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979121|ref|YP_004288837.1| DNA polymerase III subunit epsilon [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304425641|gb|EFM28759.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179049|emb|CBZ49093.1| DNA polymerase III subunit epsilon [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 195 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F Q + V+ ++ +++S + + D +TGIT Sbjct: 7 YIAFDLE-FNTVAEKSHIIQVSAVKF-KEGHEVDSFDTY---VYTDVPLQSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K E F T ++GYN ++ D Sbjct: 62 SEKIANAPK-LDEVLADFKTFVGE--TALVGYNALKSDLPLLAENELD------------ 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + + + + +G + KL +A GI + H++ D T Sbjct: 107 -------LTELYKVDLYDEAFERRSTDLNGIANLKLTSVAEFLGIS-GHGHNSLEDARMT 158 Query: 185 LALVWLIREKKPK 197 + E Sbjct: 159 ALVYEKFMEFDEN 171 >gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] Length = 217 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + + + A + ++D + + F +P + DPE++ G Sbjct: 23 VIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPFEGANIDPESIKFNG 82 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + +E + + + II +N FD + R Sbjct: 83 IDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGFIMAAAQR---- 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + N + D + + F + AH Sbjct: 139 --TNAKRNPFHPFSTFDTATLSGFMFGQTVLIKACQAAKIPF-----------DGSQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAELFCYMVNH 203 >gi|292489630|ref|YP_003532520.1| oligoribonuclease [Erwinia amylovora CFBP1430] gi|291555067|emb|CBA23161.1| oligoribonuclease [Erwinia amylovora CFBP1430] gi|312173806|emb|CBX82060.1| oligoribonuclease [Erwinia amylovora ATCC BAA-2158] Length = 193 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 12 NNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAE 48 >gi|149926412|ref|ZP_01914673.1| Exonuclease [Limnobacter sp. MED105] gi|149824775|gb|EDM83989.1| Exonuclease [Limnobacter sp. MED105] Length = 244 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 63/195 (32%), Gaps = 35/195 (17%) Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK----IESTEVFFCKPA------DDYLP 53 V+ D E+ G + DR A + D Q ++ EV +P + Sbjct: 38 VVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMIEFEAI 97 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 D + I GI A + GV +AE + + +F + + FD+ + Sbjct: 98 DKNNILIHGIGIG-AQQKGV-KAEVA--LSEFLRYVGHSPLIAFHSWFDEILINKALRKV 153 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + W LD+ + Q P L GIE Sbjct: 154 LGRTTHRHW---------LDLEHLAAVLHKENHQLP----------LDVWMQRYGIECEQ 194 Query: 174 AHDAKADVYATLALV 188 H A ADV AT L+ Sbjct: 195 RHQAAADVLATAQLL 209 >gi|157368671|ref|YP_001476660.1| oligoribonuclease [Serratia proteamaculans 568] gi|166918640|sp|A8G8U2|ORN_SERP5 RecName: Full=Oligoribonuclease gi|157320435|gb|ABV39532.1| Exonuclease RNase T and DNA polymerase III [Serratia proteamaculans 568] Length = 181 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|113868667|ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16] gi|113527443|emb|CAJ93788.1| Oligoribonuclease (3'->5' exoribonuclease) [Ralstonia eutropha H16] Length = 208 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 12/140 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G DR + A V D + + V +D L D Sbjct: 14 NNLIWLDMEMTGLQPDTDRIIEIAIVVTDSELNILAEGPVLVIHQSDAVLDGMDNWNKGT 73 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN-----IF 110 G + K + E + + F + + N+I D + Sbjct: 74 HGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFMARYMPKLEA 133 Query: 111 YRNFYDSYRWSWDNGNSRWD 130 + ++ + + RW+ Sbjct: 134 FFHYRNLDVSTLKELCKRWE 153 >gi|50122884|ref|YP_052051.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043] gi|59798024|sp|Q6D037|ORN_ERWCT RecName: Full=Oligoribonuclease gi|49613410|emb|CAG76861.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043] Length = 180 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G + DR + A + D + V +D L D V Sbjct: 5 NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMDDWNVRT 64 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + E F I N+I D + Sbjct: 65 HGASGLTDRVKVSTADERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRYMPELEA 124 Query: 116 DSYRW 120 + Sbjct: 125 YFHYR 129 >gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] Length = 177 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + D A V V + I+S D + I GI Sbjct: 2 NFTAMDFET--ANRHYDSACSLALVLVRDN-KIIDSFYTV---INPQMPFDKNNIKIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E +I F ++ +N RFD + + Sbjct: 56 TANDVKDAP-TMNEVWPKIRLLFQ--PGMLVVAHNARFDCNVMKKSLKKY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ Y + +++L ++ I+ + H+A +D A Sbjct: 103 ---------NIAEPHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHHHNALSDSEA 153 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 154 CAEILIKQNQQ 164 >gi|119468877|ref|ZP_01611902.1| putative DNA polymerase, exonuclease activity [Alteromonadales bacterium TW-7] gi|119447529|gb|EAW28796.1| putative DNA polymerase, exonuclease activity [Alteromonadales bacterium TW-7] Length = 207 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 20/203 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + +++ D E G D A V +D Q K+ ++ F K P Sbjct: 22 SQRYLVIDLELTGLDSKQHEIVSVAWVVIDNQCIKMSESQHFINKDVKSLEQSP---VFH 78 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ G + FS CI+ ++N D + + Sbjct: 79 GISTDSVA-QGQSLQSILMSLSAHFSD---CILVFHNAMLDWGFLKLALKNAGVT----- 129 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D L + + I+ L + + + H A D Sbjct: 130 -QRPKLIIDTLQIEKKRLLQHASDIKL-------DDLTLNECRNRYDLPSYHCHHALTDA 181 Query: 182 YATLALVWLIREKKPKLFEYLYD 204 AT L+ + E Sbjct: 182 QATAELLLAQCHQIGAGKELTLR 204 >gi|300812809|ref|ZP_07093204.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496145|gb|EFK31272.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 119 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 11/107 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + ++D E G+ + Q ++V + + + P+ + + + +TGI+ Sbjct: 8 YTVFDLEITGK-----KIIQIGALKVRDD-QTVAKFST-YVNPSLEKI-NDYVSHLTGIS 59 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + +++ E F + ++G+N + FD + Y Sbjct: 60 NYQTDAVPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNGY 103 >gi|75812567|ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413] gi|75705323|gb|ABA24997.1| Exonuclease [Anabaena variabilis ATCC 29413] Length = 192 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 8/126 (6%) Query: 5 FVIYDYETF----GRDVALD-RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 F++ D E G + + V V+ + + ++ + F KP + Sbjct: 10 FLVLDLEATCCDKGTIKRHEMEIIEIGAVMVEAQTLKILDEFQTFI-KPIRHPILTEFCK 68 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T IT + E + Q+ S + G + + ++ + N Sbjct: 69 LLTSITQTQVDHAPE-YPEAIAMLKQWLSKYPNAVFGSWGDYDRNQFKQDSKFHNILFPI 127 Query: 119 RWSWDN 124 + N Sbjct: 128 AYPHIN 133 >gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana] gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana] gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana] Length = 468 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 28/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V ++ ++ S +PAD L +V Sbjct: 9 IAFFDVETT--VPKRGQRFAILEFGSILVCPKKLTELRSYTTL-VQPADLSLISSLSVRC 65 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + A+ + ++ G+N +RFD R + Sbjct: 66 NGIKRDDVVLAPL-FADIADTVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 117 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ + H + D Sbjct: 118 QPPEPKGAIDSLGLL------------TQKFGRRAGDMKMATLARYFGLGN-QTHRSLDD 164 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 165 VRMNLEVLKYC 175 >gi|307104722|gb|EFN52974.1| hypothetical protein CHLNCDRAFT_26251 [Chlorella variabilis] Length = 194 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 7/168 (4%) Query: 21 RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 + + V VD + + +P +TGIT GV Sbjct: 1 EIIELSCVVVDTARTTVLPVHFQRYVRPDQHPCLSDFCTELTGITQAMV-DGGVPLHTAL 59 Query: 80 RRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 + + + +G +S +R D +W ++ R Sbjct: 60 QDLDAWLRQQGLIGQVGGRCCSSRRCFSCCSTWR---DWDLKVQMQMECKWRRIEQPRWQ 116 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + G W + + A G + AH A D T Sbjct: 117 KRWIDIGAVWFKHSGKKGNLRASCEAAELGWD-GRAHSAIDDARNTAR 163 >gi|332974570|gb|EGK11490.1| oligoribonuclease [Kingella kingae ATCC 23330] Length = 182 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ D E G + D+ + A + D+ + + V+ +D+ + D Sbjct: 4 QNNLCWLDMEMTGLNPDTDKIIEIAMIITDKHLNVLAQSPVYAIHQSDEIMNGMDEWCTT 63 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+T Q+ EA+ + + NT + N I D + R Sbjct: 64 THARTGLT-QRVKESTWTEAQVESELLAWMQQWLPANTTPMCGNTIHQDRRFMVRHMPRL 122 Query: 114 FYDSYRW 120 + Sbjct: 123 EAFFHYR 129 >gi|213584766|ref|ZP_03366592.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 43 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/43 (67%), Positives = 32/43 (74%) Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85 F+CKPADDYLP P AV ITGITPQ+A G EA F+RRIH Sbjct: 1 FYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHAL 43 >gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99] gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99] Length = 225 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + ++ T + +P + +P+A+ G Sbjct: 20 VVIDVETAGFNCQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + D + L GI+ N A Sbjct: 140 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACSIAGIDFDNSEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I K Sbjct: 181 HSALYDTERTAELFCHIVNK 200 >gi|317402939|gb|EFV83479.1| oligoribonuclease [Achromobacter xylosoxidans C54] Length = 181 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 N V D E G D +R + A V + + V +D L +A+ Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQSDSLL---DAMDNWN 62 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 G + K + EA+ + F + + N I D + R Sbjct: 63 KSTHGKSGLIDKVRASTISEAQAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYMPR 122 Query: 113 NFYDSYRW 120 + Sbjct: 123 LEQFFHYR 130 >gi|323492478|ref|ZP_08097626.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546] gi|323313265|gb|EGA66381.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546] Length = 176 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 21/151 (13%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M ++ V+ +D E T G + +D +I ++ KP Sbjct: 1 MNHNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVSGEIVKRAQYYVKPEH 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G AE + + + F N + DD R Sbjct: 55 DEV-SLFCSQLTGITPRKIEKQGRPLAEVIKSMVKNFGGANKIYAAW---GRDDRVLREE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 D + N + + + + ++ Sbjct: 111 CQAKGIDMPFNEFINLATLYRIQNRLKDKRI 141 >gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127] gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047] gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127] gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047] gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] Length = 229 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M A + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|227875987|ref|ZP_03994110.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243] gi|227843519|gb|EEJ53705.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243] Length = 205 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58 +T+ V D E G D+A D + + D +++ KP+ L + Sbjct: 5 LTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMGDFVR 64 Query: 59 FIT---GITPQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + G+ + V EA + + +F + N++ D + + Sbjct: 65 EMHTKSGLLDELDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKKQM 121 >gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1] gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1] gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1] Length = 224 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 63/215 (29%), Gaps = 31/215 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52 M F V+ D ET G + A D + A V + D + F +P + Sbjct: 22 MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 81 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 +P A+ TGI A+ + + R + + I+ +N FD + Sbjct: 82 IEPAALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN + + L + + DG Sbjct: 142 NAAVARNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201 AH A+ D T L I + ++ + Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219 >gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 28/208 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D + + T F +P + +P A+ TG Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFTG 91 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + I+ +N FD + R Sbjct: 92 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 151 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + A + AH Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQ-----------------AADIDFDGREAHS 194 Query: 177 AKADVYATLALVWLIREK--KPKLFEYL 202 A+ D T L I + + +E Sbjct: 195 ARYDTEKTAELFCGIVNRWKQMGGWEDF 222 >gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440] gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440] Length = 203 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 63/215 (29%), Gaps = 31/215 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52 M F V+ D ET G + A D + A V + D + F +P + Sbjct: 1 MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 60 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 +P A+ TGI A+ + + R + + I+ +N FD + Sbjct: 61 IEPAALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN + + L + + DG Sbjct: 121 NAAVARNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 169 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201 AH A+ D T L I + ++ + Sbjct: 170 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 198 >gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ] gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ] Length = 202 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 35/217 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52 M + F V+ D ET G + A D + A + + + + E + F +P + Sbjct: 1 MAHRFRGYLPVVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPFEGAN 60 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 + A+ TGI A+ + E R + + I+ +N FD + Sbjct: 61 IEAAALEFTGIKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFL 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + S +D + Y + L + Sbjct: 121 NAAVARCDIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQS 161 Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEY 201 GIE AH A+ D T L I + ++ + Sbjct: 162 AGIEFDGREAHSARYDTEKTAELFCGIVNRWKEMGGW 198 >gi|297622496|ref|YP_003703930.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] gi|297163676|gb|ADI13387.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] Length = 224 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 21/176 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET G D P V V ++ + + A + G+T Sbjct: 42 YVAVDLETTGLRPRWDAPLSVGWVLVRAGAIELAT--ARYAVLRAKREVAQSAT-VHGLT 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + + ++ ++ F D Sbjct: 99 DDAVADG---EDAAAVLAELLAVLAGRVLVAHHAAIELR----------FLDRLCREHFG 145 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G ++D + + +L + G+ AH A +D Sbjct: 146 GPLLVRVVDTLALAARSAERHGAVDENA-----LRLHAVRARYGLPRYAAHSALSD 196 >gi|266624851|ref|ZP_06117786.1| exonuclease family protein [Clostridium hathewayi DSM 13479] gi|288863268|gb|EFC95566.1| exonuclease family protein [Clostridium hathewayi DSM 13479] Length = 330 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 55/207 (26%), Gaps = 28/207 (13%) Query: 2 TNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 ++++ D E G++ +D + VR+D + ++I +P Sbjct: 1 MKNYIVLDLEWNQSPDGKEGTIDHFPFEIIEIGAVRLDEERKEIGEF-RRLIRPRVYPQM 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +T + + R+G I F I D + Sbjct: 60 HYRISEVTHMDMAELERNGETFETV---IRDFLEWCGDDCIFCTWGSMDLTELQRNMVYY 116 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + L +++ DG L GI Sbjct: 117 GVEIPFDKPLLYYDVQKLYSLLQ---------------GDGKQKQSLDITVEELGIREDR 161 Query: 174 A-HDAKADVYATLALVWLIREKKPKLF 199 H A D + T ++ + ++ + Sbjct: 162 PFHRALDDAHYTGRVMAAMDFERVLEY 188 >gi|114320658|ref|YP_742341.1| oligoribonuclease [Alkalilimnicola ehrlichii MLHE-1] gi|122311672|sp|Q0A8I6|ORN_ALHEH RecName: Full=Oligoribonuclease gi|114227052|gb|ABI56851.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola ehrlichii MLHE-1] Length = 193 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ V D E G D DR + A + D Q + V + ++ L D Sbjct: 6 HNLVWLDLEMTGLDPDTDRIIEIATLVTDSQLNILAEGPVLAVRQSEQALAAMDEWNTRT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ + EA F + N+I D + R Sbjct: 66 HGESGLIERVRASHLDEAAAEAETLAFLRRWVPERASPMCGNSICQDRRFLYRYMPRLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 WFHYR 130 >gi|320010661|gb|ADW05511.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G +A D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + +AE I + P + N++ D + Sbjct: 61 QMHTASGLLDELAGGTTLADAEERVLAYIREHVKEPGKAPLCGNSVGTDRGFLAR----- 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N E Sbjct: 116 --DMPSLEGFLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKNG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++ + R+ Sbjct: 155 NHRALADIRDSITELRYYRD 174 >gi|266706193|gb|ACY78400.1| OrnA [Streptomyces chattanoogensis] Length = 206 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G +A D + A + D + + +P + L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNVLGDGVDVVIRPPAEALTTMPEVVR 60 Query: 60 -IT---GITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + + EA+ I Q P + N++ D + Sbjct: 61 AMHTASGLLDELDRGTTLEDAEAQVLAYIRQHVPEPGKAPLCGNSVGTDRGF-------L 113 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N + Sbjct: 114 LRDMPTLENYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPDKSG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIRESIAELRYYRE 174 >gi|225717126|gb|ACO14409.1| Oligoribonuclease, mitochondrial precursor [Esox lucius] Length = 207 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 15/131 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYL 52 M V D E G D+ D+ + A + D + I +T+ D Sbjct: 10 MKQRMVWVDLEMTGLDIEKDQIIEMACIITDSELNVLAGGPNLIINTTDELLDGMDDWCK 69 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109 +T Q + + F P C + N++ D + Sbjct: 70 EHHGNSGLT----QAVRNSKITLQQAEYEFLSFIRQHTPPGQCPLAGNSVHADKKFLDKY 125 Query: 110 FYRNFYDSYRW 120 + + + Sbjct: 126 MPQFMHHLHYR 136 >gi|227488080|ref|ZP_03918396.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium glucuronolyticum ATCC 51867] gi|227091942|gb|EEI27254.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium glucuronolyticum ATCC 51867] Length = 427 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 27/192 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + Q A V+V + ++ P E + Sbjct: 251 KPKFVAVDFET--ANRSSRSACQIAMVKV-EYGQIVDRFSTLLKPPPGHDEF--EFTYFH 305 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI+ + I F + +N FD + DSY + Sbjct: 306 GISARDVADAP-SWKFVEPYIRAFVDR---LPVYAHNASFDRGVWVS------MDSYYGT 355 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + + A F+L H A +D Sbjct: 356 RTLPEEFYCSYRTAKRLIPGLENYKLPTVTKAIAPWFRLDH------------HRADSDA 403 Query: 182 YATLALVWLIRE 193 A +V ++ Sbjct: 404 EACALIVIGLQM 415 >gi|229047208|ref|NP_935870.2| oligoribonuclease [Vibrio vulnificus YJ016] gi|229220645|ref|NP_760214.2| oligoribonuclease [Vibrio vulnificus CMCP6] gi|320155081|ref|YP_004187460.1| 3'-to-5' oligoribonuclease [Vibrio vulnificus MO6-24/O] gi|29611786|sp|Q8DCV6|ORN_VIBVU RecName: Full=Oligoribonuclease gi|41017432|sp|Q7MGZ7|ORN_VIBVY RecName: Full=Oligoribonuclease gi|319930393|gb|ADV85257.1| 3'-to-5' oligoribonuclease (orn) [Vibrio vulnificus MO6-24/O] gi|319999184|gb|AAO09741.2| Oligoribonuclease [Vibrio vulnificus CMCP6] Length = 181 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + + A + D + + V +++ L D Sbjct: 6 QNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ ++ + E E + F I N+I D + Sbjct: 66 HTGSGL-VERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 GYFHYR 130 >gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231] gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231] Length = 222 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 55/199 (27%), Gaps = 28/199 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61 V+ D ET G + + D Q A VR+D + +P D DP+++ Sbjct: 28 VVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYST-HVEPFDGANIDPKSLEFN 86 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR E E R I + I+ +N FD + R Sbjct: 87 RIDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAAVARTGI 146 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A + AH Sbjct: 147 RRNPFHPFTSFDTATLGGLAFGQTVLARAVK-----------------ASGASWDGREAH 189 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I + Sbjct: 190 SAIYDAEKTAELFCTIVNR 208 >gi|304437456|ref|ZP_07397414.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369506|gb|EFM23173.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 219 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 29/200 (14%) Query: 6 VIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D E G++ + VR++ + + + + + C + + Sbjct: 4 IVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVC--PEYGMVKKHI 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT +K F+ H F Y+ D R R Sbjct: 62 TELTGITQEKVAGHPA----FADSFHAFVVWIGEAETKIYSWSMSDIKQLRKEC-RLKLP 116 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + +W + R + + + A L + + H Sbjct: 117 DFDVTWLD----------ARWVDLQQEFDDRLGLHNSLALKHALGAMGRRF---EGSQHS 163 Query: 177 AKADVYATLALVWLIREKKP 196 A AD T A++ L+++ Sbjct: 164 ALADAVNTSAVLALMQDDAK 183 >gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tuberculosis H37Rv] gi|15842039|ref|NP_337076.1| oligoribonuclease [Mycobacterium tuberculosis CDC1551] gi|31793691|ref|NP_856184.1| oligoribonuclease [Mycobacterium bovis AF2122/97] gi|121638393|ref|YP_978617.1| oligoribonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662347|ref|YP_001283870.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra] gi|148823708|ref|YP_001288462.1| oligoribonuclease [Mycobacterium tuberculosis F11] gi|167966612|ref|ZP_02548889.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra] gi|215404448|ref|ZP_03416629.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987] gi|215412277|ref|ZP_03421037.1| oligoribonuclease [Mycobacterium tuberculosis 94_M4241A] gi|215427894|ref|ZP_03425813.1| oligoribonuclease [Mycobacterium tuberculosis T92] gi|215431457|ref|ZP_03429376.1| oligoribonuclease [Mycobacterium tuberculosis EAS054] gi|215446761|ref|ZP_03433513.1| oligoribonuclease [Mycobacterium tuberculosis T85] gi|218754244|ref|ZP_03533040.1| oligoribonuclease [Mycobacterium tuberculosis GM 1503] gi|219558511|ref|ZP_03537587.1| oligoribonuclease [Mycobacterium tuberculosis T17] gi|224990887|ref|YP_002645574.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253798409|ref|YP_003031410.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435] gi|254232640|ref|ZP_04925967.1| oligoribonuclease orn [Mycobacterium tuberculosis C] gi|254366813|ref|ZP_04982855.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem] gi|254551558|ref|ZP_05142005.1| oligoribonuclease [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187518|ref|ZP_05764992.1| oligoribonuclease [Mycobacterium tuberculosis CPHL_A] gi|260201636|ref|ZP_05769127.1| oligoribonuclease [Mycobacterium tuberculosis T46] gi|260205826|ref|ZP_05773317.1| oligoribonuclease [Mycobacterium tuberculosis K85] gi|289444042|ref|ZP_06433786.1| oligoribonuclease orn [Mycobacterium tuberculosis T46] gi|289448156|ref|ZP_06437900.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A] gi|289553697|ref|ZP_06442907.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605] gi|289570671|ref|ZP_06450898.1| oligoribonuclease orn [Mycobacterium tuberculosis T17] gi|289575216|ref|ZP_06455443.1| oligoribonuclease orn [Mycobacterium tuberculosis K85] gi|289746293|ref|ZP_06505671.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987] gi|289751120|ref|ZP_06510498.1| oligoribonuclease orn [Mycobacterium tuberculosis T92] gi|289754620|ref|ZP_06513998.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054] gi|289758643|ref|ZP_06518021.1| oligoribonuclease orn [Mycobacterium tuberculosis T85] gi|289762679|ref|ZP_06522057.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503] gi|294994382|ref|ZP_06800073.1| oligoribonuclease [Mycobacterium tuberculosis 210] gi|297635119|ref|ZP_06952899.1| oligoribonuclease [Mycobacterium tuberculosis KZN 4207] gi|297732110|ref|ZP_06961228.1| oligoribonuclease [Mycobacterium tuberculosis KZN R506] gi|298525983|ref|ZP_07013392.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A] gi|306776784|ref|ZP_07415121.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001] gi|306780550|ref|ZP_07418887.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002] gi|306785311|ref|ZP_07423633.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003] gi|306789665|ref|ZP_07427987.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004] gi|306793992|ref|ZP_07432294.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005] gi|306798387|ref|ZP_07436689.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006] gi|306804267|ref|ZP_07440935.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008] gi|306807692|ref|ZP_07444360.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007] gi|306968664|ref|ZP_07481325.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009] gi|306972895|ref|ZP_07485556.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010] gi|307080608|ref|ZP_07489778.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011] gi|307085195|ref|ZP_07494308.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012] gi|313659444|ref|ZP_07816324.1| oligoribonuclease [Mycobacterium tuberculosis KZN V2475] gi|54038785|sp|P65598|ORN_MYCBO RecName: Full=Oligoribonuclease gi|54041582|sp|P65597|ORN_MYCTU RecName: Full=Oligoribonuclease gi|166216268|sp|A1KLK6|ORN_MYCBP RecName: Full=Oligoribonuclease gi|166216271|sp|A5U5K8|ORN_MYCTA RecName: Full=Oligoribonuclease gi|3261780|emb|CAB08931.1| OLIGORIBONUCLEASE ORN [Mycobacterium tuberculosis H37Rv] gi|13882317|gb|AAK46890.1| oligoribonuclease, putative [Mycobacterium tuberculosis CDC1551] gi|31619284|emb|CAD97400.1| PROBABLE OLIGORIBONUCLEASE ORN [Mycobacterium bovis AF2122/97] gi|121494041|emb|CAL72519.1| Probable oligoribonuclease orn [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601699|gb|EAY60709.1| oligoribonuclease orn [Mycobacterium tuberculosis C] gi|134152323|gb|EBA44368.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem] gi|148506499|gb|ABQ74308.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra] gi|148722235|gb|ABR06860.1| oligoribonuclease orn [Mycobacterium tuberculosis F11] gi|224774000|dbj|BAH26806.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253319912|gb|ACT24515.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435] gi|289416961|gb|EFD14201.1| oligoribonuclease orn [Mycobacterium tuberculosis T46] gi|289421114|gb|EFD18315.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A] gi|289438329|gb|EFD20822.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605] gi|289539647|gb|EFD44225.1| oligoribonuclease orn [Mycobacterium tuberculosis K85] gi|289544425|gb|EFD48073.1| oligoribonuclease orn [Mycobacterium tuberculosis T17] gi|289686821|gb|EFD54309.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987] gi|289691707|gb|EFD59136.1| oligoribonuclease orn [Mycobacterium tuberculosis T92] gi|289695207|gb|EFD62636.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054] gi|289710185|gb|EFD74201.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503] gi|289714207|gb|EFD78219.1| oligoribonuclease orn [Mycobacterium tuberculosis T85] gi|298495777|gb|EFI31071.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A] gi|308214844|gb|EFO74243.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001] gi|308326616|gb|EFP15467.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002] gi|308330038|gb|EFP18889.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003] gi|308333882|gb|EFP22733.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004] gi|308337682|gb|EFP26533.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005] gi|308341363|gb|EFP30214.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006] gi|308345880|gb|EFP34731.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007] gi|308349155|gb|EFP38006.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008] gi|308353779|gb|EFP42630.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009] gi|308357722|gb|EFP46573.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010] gi|308361662|gb|EFP50513.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011] gi|308365253|gb|EFP54104.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012] gi|323718919|gb|EGB28073.1| oligoribonuclease orn [Mycobacterium tuberculosis CDC1551A] gi|326904125|gb|EGE51058.1| oligoribonuclease orn [Mycobacterium tuberculosis W-148] gi|328458177|gb|AEB03600.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 4207] Length = 215 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 26/163 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D+ + A + D + D + + + Sbjct: 1 MQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGV--------DVVMHADDAAL 52 Query: 61 TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 +G+ + R G++ EA I++ P T + N+I D Sbjct: 53 SGMIDVVAEMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRA 112 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 + DS+ S L + + Sbjct: 113 FI--ARDMPTLDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153 >gi|307132771|ref|YP_003884787.1| oligoribonuclease [Dickeya dadantii 3937] gi|306530300|gb|ADN00231.1| oligoribonuclease [Dickeya dadantii 3937] Length = 183 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 34/126 (26%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + D L D V Sbjct: 8 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAEGPTLAVHQPDSQLALMDDWNVRT 67 Query: 61 T---GITP---QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ A +G E E Q + I N+I D + Sbjct: 68 HTASGLVDRVKASAFDEGAAERETIA-FLQQWVPAGKSPICGNSIGQDRRFLFRYMPELE 126 Query: 115 YDSYRW 120 + Sbjct: 127 AYFHYR 132 >gi|302551620|ref|ZP_07303962.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736] gi|302469238|gb|EFL32331.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736] Length = 200 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRALETMPEVVR 60 Query: 60 ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 Q G+ E + + +F P + N++ D + Sbjct: 61 ------QMHTASGLLAELPDGTTLRDAEEQVLTYVREFVKEPGKAPLCGNSVGTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ + + P A N Sbjct: 113 -----LLRDMPTLEDYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 + H A AD+ ++A + RE Sbjct: 149 SPQKNGNHRALADIRESIAELRYYRE 174 >gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01] gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US] gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1] gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05] gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01] gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US] gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1] gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05] Length = 177 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V + ++ D + + I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE I + ++ +N RFD R R + Sbjct: 56 TAEDVKNAP-TMAEVWPHIKEL--YQPGMLVAAHNARFDTNVMRQSLARYGIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + KL ++ A +E + H+A +D A Sbjct: 108 --------------HYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEA 153 Query: 184 TLALVWLIREK 194 ++ E+ Sbjct: 154 CAGILIKQEEQ 164 >gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115] gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit) [Deinococcus deserti VCD115] Length = 204 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 25/195 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 V D+E+ G + A D Q +D + + +P + V I G+ Sbjct: 12 SLVALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRPT--RPFRADTVAIHGL 69 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + S + + ++ + + + + R Sbjct: 70 SYELLQEAPA----ISTVRLELGARLQGRVLVAHYAALELGFLKRWGLR----------- 114 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D L + A + + ++ L LA G+E HDA AD Sbjct: 115 -PAATLDTLMLALA-------LDRQSTATARRDAYTLSALARRFGVEVYGEHDALADALI 166 Query: 184 TLALVWLIREKKPKL 198 T + ++ + Sbjct: 167 TAQVFLVLAHELETQ 181 >gi|290512276|ref|ZP_06551643.1| oligoribonuclease [Klebsiella sp. 1_1_55] gi|289775271|gb|EFD83272.1| oligoribonuclease [Klebsiella sp. 1_1_55] Length = 199 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + +D L D V Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 83 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ + V E + +F I N+I D + + Sbjct: 84 HTGSGL-VDRVKASAVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 142 Query: 115 YDSYRW 120 + Sbjct: 143 AYFHYR 148 >gi|297711385|ref|XP_002832336.1| PREDICTED: three prime repair exonuclease 2-like [Pongo abelii] Length = 313 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 32/208 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 85 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPERDESGALVLPRVLDKLTLCMC-- 142 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103 + +A ITG++ + R + R + F S C++ +N +D Sbjct: 143 -PERPFTAKASEITGLSSEGLARCRKSGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDF 201 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 R R + D L +R + G + G + L L Sbjct: 202 PLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGSL 252 Query: 164 AL-ANGIEHVNAHDAKADVYATLALVWL 190 E AH A+ DV+ L + Sbjct: 253 FHRYFRAEPSAAHSAEGDVHTLLLIFLH 280 >gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3] gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3] Length = 211 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 31/206 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + ++D + + ST F +P + + A+ G Sbjct: 20 VVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEGANIEQAALDFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ S + I+ +N FD + R Sbjct: 80 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTAALSGLAYGQTV-------------LAKACRTAGMEFDNKE 180 Query: 174 AHDAKADVYATLALVWLIREKKPKLF 199 AH A D T L I K + Sbjct: 181 AHSALYDTQKTTELFCGIVNKVESPW 206 >gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] Length = 336 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 27/188 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F D+ET + P +V R +E P + + I Sbjct: 1 MALDFTAIDFET--ANGFRGSPCSVGLSKV-RGGVVVEEASWLMRPPENHDHFEFHNTRI 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E I F ++ +N FD R+ + Sbjct: 58 HGIRAEDVAGRPR-FGELFPEIGAFI---GDDVLAAHNAAFDLGVIRSGLEVSGL----- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 +D + + S L A G+ VN HDA D Sbjct: 109 ----AGPAYDYVCTVMLSRRCY-----------SLVSNSLPYAAEEAGVPLVNHHDAAED 153 Query: 181 VYATLALV 188 A ++ Sbjct: 154 ARACAGIL 161 >gi|187477876|ref|YP_785900.1| oligoribonuclease [Bordetella avium 197N] gi|123515337|sp|Q2L2P5|ORN_BORA1 RecName: Full=Oligoribonuclease gi|115422462|emb|CAJ48987.1| oligoribonuclease [Bordetella avium 197N] Length = 181 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 N V D E G D +R + A V + + V +D L EA+ Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQSDSVL---EAMDNWN 62 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYR 112 G + K + EA+ +++ F S + N I D + Sbjct: 63 KSTHGKSGLIDKVRASTLTEAQAEQQLIDFLSQYVPAGKSPLCGNTISQDRRFMFAYMPN 122 Query: 113 NFYDSYRW 120 + Sbjct: 123 LERFFHYR 130 >gi|227889650|ref|ZP_04007455.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC 33200] gi|268319793|ref|YP_003293449.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785] gi|227849793|gb|EEJ59879.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC 33200] gi|262398168|emb|CAX67182.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785] Length = 177 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET A V V E ++ D + I GI Sbjct: 2 NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I + ++ +N RFD R + + Sbjct: 56 TAEDIKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L +A + + KL ++ A I + H+A +D A Sbjct: 110 ---FAIDTLATSKAFEPYL-------------PNHKLDTVSEALNINLWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] Length = 177 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + D A V V + I+S D + I GI Sbjct: 2 NFTAMDFET--ANRHYDSACSLALVLVRDN-KIIDSFYTV---INPQMPFDKNNIKIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T E +I F ++ +N RFD + + Sbjct: 56 TANDVKDAP-TMDEVWPKIRLLFQ--PGMLVVAHNARFDCNVMKKSLKKY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ Y + +++L ++ I+ + H+A +D A Sbjct: 103 ---------NIAEPHYLTIDTLATSRALIPNLKNYRLDTVSNQLNIDLWHHHNALSDSEA 153 Query: 184 TLALVWLIREK 194 ++ ++ Sbjct: 154 CAEILIKQNQQ 164 >gi|294625309|ref|ZP_06703946.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600378|gb|EFF44478.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 194 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A + D Q + E+ P + EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 + Q+ L V A+ + F S + N+I D + Sbjct: 65 NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 124 Query: 112 RNFYDSYRW 120 R + Sbjct: 125 RLERYFHYR 133 >gi|261340232|ref|ZP_05968090.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316] gi|288317749|gb|EFC56687.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316] Length = 220 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 68/265 (25%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET + A V V + + + +P D P+A+ I IT Sbjct: 4 VIDTETCDL---QGGIVEVASVDV-VDGQIV-NPMSHLVRP--DRPISPQAMAIHRITES 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E H + +N FD W Sbjct: 57 MVADKPWIE-EVISHYH------GSPWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL E ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVQTP----EGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 L+ I E + + L F + +A VA + Sbjct: 146 LLIDIMNTSGWTPEDMATITGRPALLT---------------TFTFGKYRGKAVAEVADN 190 Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + L Sbjct: 191 DPGYLRWLYNNLDRMSPELRLTLKH 215 >gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32] gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32] Length = 224 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + I+ T F +P + +P A+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIH------QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I Q + + CII +N FD + R Sbjct: 80 IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + + D AH Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNK-----------------EAHS 182 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 ALYDTERTAELFCYIVNR 200 >gi|51594770|ref|YP_068961.1| oligoribonuclease [Yersinia pseudotuberculosis IP 32953] gi|153949964|ref|YP_001402615.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758] gi|229597226|ref|YP_001722527.2| oligoribonuclease [Yersinia pseudotuberculosis YPIII] gi|229597243|ref|YP_001870889.2| oligoribonuclease [Yersinia pseudotuberculosis PB1/+] gi|59798016|sp|Q66FC2|ORN_YERPS RecName: Full=Oligoribonuclease gi|166918641|sp|A7FMY7|ORN_YERP3 RecName: Full=Oligoribonuclease gi|51588052|emb|CAH19658.1| possible oligoribonuclease [Yersinia pseudotuberculosis IP 32953] gi|152961459|gb|ABS48920.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758] Length = 181 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59 N+ + D E G D DR + A + D + V + + L D V Sbjct: 5 QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + + + +F I N++ D + Sbjct: 65 THTGSGL-VERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EAYFHYR 130 >gi|307544322|ref|YP_003896801.1| oligoribonuclease [Halomonas elongata DSM 2581] gi|307216346|emb|CBV41616.1| oligoribonuclease [Halomonas elongata DSM 2581] Length = 197 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 V D E G D +R + A + D + V D L EA+ Sbjct: 13 QRLVWIDLEMTGLDPERERIIEVATLITDADLNVVAEGPVLAVHQPDALL---EAMDDWN 69 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYR 112 G + ++ + AE RR F P T + N++ D + Sbjct: 70 QKTHGGSGLTERVRASAIDTAEAERRTLAFLHEHVAPGTSPMCGNSVHQDRRFLEREMPE 129 Query: 113 NFYDSYRW 120 + Sbjct: 130 LLAFFHYR 137 >gi|83816222|ref|YP_444853.1| exonuclease, putative [Salinibacter ruber DSM 13855] gi|83757616|gb|ABC45729.1| exonuclease, putative [Salinibacter ruber DSM 13855] Length = 236 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 11/123 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D + V Q E + A A + GIT Sbjct: 67 VFLDTETTGSGP-QDAVIELG--VVAAQGEVL--IHTLVAPLAP---VTRGARRVHGITD 118 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + R+ + +D + Sbjct: 119 EELADAP-PFPTVADRLDTVLADAECVWTF--GPTYDRRMLLQTAALAECPETHRRIQDS 175 Query: 126 NSR 128 R Sbjct: 176 TWR 178 >gi|32491084|ref|NP_871338.1| ribonuclease T [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173142|sp|Q8D2L9|RNT_WIGBR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25166291|dbj|BAC24481.1| rnt [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 215 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 62/212 (29%), Gaps = 26/212 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G D D + A + R+D + +I++ F P A+ Sbjct: 21 VVIDVETAGFDPYRDALLEIAIITLRMDDNGFLRIDNKLHFNIIPTPGLNIKKSALKFNK 80 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R + E + + I + ++ +N FD + + R+ Sbjct: 81 IDPYNPFRAAINERKAIKEIFNTVRLGIKKQSCSKAVVVAHNAYFDHSFLMSAVDRSKIK 140 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L ++ S + + AH Sbjct: 141 YNPFHSFSTFDTATLSGLVLGQTVLSKAC-----------------IIAGIEFNNNYAHS 183 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 A D T L I + K+ + K Sbjct: 184 ALYDSKKTAELFCEIVNRWKKMGGWPIPKNRK 215 >gi|256026220|ref|ZP_05440085.1| YacC [Escherichia sp. 4_1_40B] Length = 293 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 11/108 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAKALEIG--LTDATGQVV-----FETRLKPTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 Q + +R++ + +I +N + + Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHS 201 >gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 227 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 33/238 (13%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V +D ET + + +F + V R+ E++ES +P D + + Sbjct: 10 IVFFDLETT-VPNKVGQYFHILEFGAIIVCPRKLEELESFTTLI-QPKDLSVVSIRSSRS 67 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT K + + +I+ + G+N RFD I + + Sbjct: 68 DGITRAKVTNAP-SFEDVAEKIYGLLN--GRIWAGHNIRRFD-----CIRIKEAFAEIGK 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + D L ++ + A + K+ LA G+ H + D Sbjct: 120 AAPEPSGIIDSLGLLSDKF------------GKRAGNMKMASLAAYFGLGVQK-HRSLDD 166 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 V L ++ + NQL + S A R+ Sbjct: 167 VRMNLEVLKHCATV------LFLESTLPNQLEGKWQSSSKIMTRSRSNYQIAQRAMPY 218 >gi|253991561|ref|YP_003042917.1| oligoribonuclease [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638439|emb|CAR67061.1| oligoribonuclease (ec 3.1.-.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783011|emb|CAQ86176.1| oligoribonuclease [Photorhabdus asymbiotica] Length = 181 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 M+ + + D E G D DR + A + D + Sbjct: 1 MSKSEHNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAE 42 >gi|209696236|ref|YP_002264166.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208010189|emb|CAQ80516.1| putative exonuclease [Aliivibrio salmonicida LFI1238] Length = 210 Score = 58.3 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 20/188 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET D A +++ + ++ +++ K + E+V I + Sbjct: 33 IDCETTSLDPNHAELVSIAAIKIKQ--NRVLTSQTIHLKLRPPHNLTSESVKIHQLRHHD 90 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 G+ E + ++ QF N I+GY+ R+ + Sbjct: 91 L-SHGLSEKDAIIQLLQFI--GNRPIVGYHIHYDKKILDRSCLRHCGHPFPNR------- 140 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 L++V + + ++ ++ + HDA D A + Sbjct: 141 ---LIEVCHIYHHKLECLLPNAYY-----DLSIEAISTHLDLPQAERHDALQDAIAAALI 192 Query: 188 VWLIREKK 195 + Sbjct: 193 YVRLHYGD 200 >gi|294658997|ref|XP_461325.2| DEHA2F22594p [Debaryomyces hansenii CBS767] gi|202953536|emb|CAG89730.2| DEHA2F22594p [Debaryomyces hansenii] Length = 295 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 37/221 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYL-PDPEAVF 59 V D E G +V D + + D E I+ E +P + + V Sbjct: 88 KPLVWIDCEMTGLNVFQDHIIEICCIITDGNLEIIDEKGFESTVYQPKEVLDGMNEWCVN 147 Query: 60 ITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G + K L + +E E I Q+ PN I+ N+I D ++ F + Sbjct: 148 QHGKSGLTAKILENPQCELSKIEDELLEYIKQYV-QPNKGIMAGNSIHMDKFFMMREFPK 206 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + D+ +M Y +P+ ++ + Sbjct: 207 IIDYLHYR-------LIDVSSIMEVGYRHNPELMKLFPKKQ------------------- 240 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 H A++D+ ++ + ++ K + KN++ + Sbjct: 241 GNHTARSDILESINQLKWYKQNYLKGEPETKELIEKNRILE 281 >gi|198438327|ref|XP_002132043.1| PREDICTED: similar to small fragment nuclease [Ciona intestinalis] Length = 205 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 7/122 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63 V D E G DV D + A + D I E +D+ L + + G Sbjct: 35 VWVDLEMTGLDVNKDHILEMACLVTDGNLNVIAQEEDLVIHQSDEVLNNMNEWCIEQHGR 94 Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + + + + + + +F C + N I D + + R + Sbjct: 95 SGLTESVRKSMITLTQAEDIMLKFIQKHAPYKVCPLAGNTIHADKRFLDHYMPRFMDHLH 154 Query: 119 RW 120 Sbjct: 155 YR 156 >gi|146293452|ref|YP_001183876.1| exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] gi|145565142|gb|ABP76077.1| Exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] Length = 223 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 20/172 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D E G D D+ V ++ +E + + ++ I GI Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQQKLVQIRGSV---GQSATIHGILDNHL 97 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ +E + F + ++ ++ D + + + Sbjct: 98 VQAVTIEDAMAW----FIAKTRGRVLVAHHSPLDCRFLQQDILA------IYHQAVFLPS 147 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + I+ S +L G+ +AH A D Sbjct: 148 IDTLMLEKRRLLRGHHAIK-------EGSLRLGACRERYGLPVYSAHSALTD 192 >gi|311896098|dbj|BAJ28506.1| putative oligoribonuclease [Kitasatospora setae KM-6054] Length = 200 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G D+ D + A + D + + +P + L PE V Sbjct: 1 MNDRLVWIDCEMTGLDLDRDALIEVAALVTDSELNVLGEGVDVIIRPPAEALEGMPEVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + EA+ + + + N++ D + Sbjct: 61 QMHTASGLLDELADGLTMAEAQERVLAYVREHVPEAGRTPLCGNSVATDRGFLSR----- 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ + + P A N + Sbjct: 116 --DMPELEGHLHYRIVDVSSIKELARRWYPR-------------------AYYNSPQKGG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIRESIAELRYYRE 174 >gi|270264991|ref|ZP_06193254.1| oligoribonuclease [Serratia odorifera 4Rx13] gi|270040925|gb|EFA14026.1| oligoribonuclease [Serratia odorifera 4Rx13] Length = 181 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|310765341|gb|ADP10291.1| Oligoribonuclease [Erwinia sp. Ejp617] Length = 187 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G + DR + A + D + Sbjct: 6 NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 42 >gi|223042138|ref|ZP_03612309.1| oligoribonuclease [Actinobacillus minor 202] gi|240947963|ref|ZP_04752389.1| oligoribonuclease [Actinobacillus minor NM305] gi|223017077|gb|EEF15518.1| oligoribonuclease [Actinobacillus minor 202] gi|240297719|gb|EER48180.1| oligoribonuclease [Actinobacillus minor NM305] Length = 181 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D +R + A + D+ + V K +D+ L V Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAIKQSDELLAKMSDWCVK 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + E + F I N++ D + Sbjct: 65 THTENGL-IERVKNSKLTERAAELQTIDFLKRWVPKGASPICGNSVPQDKRFLYKYMPDL 123 Query: 114 FYDSYRWS 121 + Sbjct: 124 ADYFHYRH 131 >gi|259907169|ref|YP_002647525.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96] gi|224962791|emb|CAX54246.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96] gi|283476976|emb|CAY72863.1| oligoribonuclease [Erwinia pyrifoliae DSM 12163] Length = 193 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G + DR + A + D + Sbjct: 12 NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 48 >gi|283834783|ref|ZP_06354524.1| oligoribonuclease [Citrobacter youngae ATCC 29220] gi|291069029|gb|EFE07138.1| oligoribonuclease [Citrobacter youngae ATCC 29220] Length = 181 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|170728503|ref|YP_001762529.1| oligoribonuclease [Shewanella woodyi ATCC 51908] gi|169813850|gb|ACA88434.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] Length = 181 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 8/129 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V +D+ L D Sbjct: 6 NNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAEGPVIAIHQSDEQLAKMDDWNKKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + EA+ +F S + + N++ D + ++ R Sbjct: 66 HGESGLVDRVRSSQYSEAQAVAMTIEFLSQHVTKGSSPMCGNSVGQDRRFM-TLYMRELE 124 Query: 116 DSYRWSWDN 124 D + + + Sbjct: 125 DFFHYRNID 133 >gi|296100932|ref|YP_003611078.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055391|gb|ADF60129.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 181 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D DR + A + D + +DD L D V Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQLALMDEWNVRT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ ++ + + E +F I N+I D + Sbjct: 66 HTGSGL-VERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 SYFHYR 130 >gi|313906420|ref|ZP_07839758.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] gi|313468755|gb|EFR64119.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] Length = 221 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 20/197 (10%) Query: 6 VIYDYETFGRDVALD--RP-----AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 ++ D E + R + V +D ++I + KP Sbjct: 4 IVVDLEMNSISRKSEARRICNLETIEIGAVMLDDDLQEISCFRT-YVKPEYADGIAGNIT 62 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT E R + + + D YD Sbjct: 63 ILTGITDDMVENAPK-FNEALRMFTNWCLGTGDAVTIHAWSDSDYNQIAKEIVLKRYDVS 121 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 +++ ++ + S K+ L +A HDA Sbjct: 122 AEE----------AELLGNAWSDFQQEFDSHLGFERQMSLKM-ALNMAGIDFTGREHDAL 170 Query: 179 ADVYATLALVWLIREKK 195 D T L+ + R++ Sbjct: 171 DDARNTAELLLVFRDEN 187 >gi|294789770|ref|ZP_06755000.1| oligoribonuclease [Simonsiella muelleri ATCC 29453] gi|294482276|gb|EFG29973.1| oligoribonuclease [Simonsiella muelleri ATCC 29453] Length = 184 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVF 59 N+ D E G + D+ + A + D + +EV+ +D+ L + + Sbjct: 4 QNNLCWLDMEMTGLNPDSDKIIEIAMIITDSNLNVLAQSEVYAIHQSDEILNNMDKWNTD 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 T ++ E + + QF + N I D + + Sbjct: 64 THTRTGLVERVKSSTYTETQVETELLQFMQTWLPEKATPMCGNTIHQDRRFMVRHMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|283786843|ref|YP_003366708.1| oligoribonuclease [Citrobacter rodentium ICC168] gi|282950297|emb|CBG89944.1| oligoribonuclease [Citrobacter rodentium ICC168] Length = 181 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|222152791|ref|YP_002561968.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus uberis 0140J] gi|222113604|emb|CAR41463.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 831 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 29/202 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + + D E + Q V + + E E+ + +TG Sbjct: 18 KKYAVIDLEATNAG-STASIIQVGIVIL-QGGEIRETFQT---DVNPHEPLSEHIKSLTG 72 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I+ ++ + ++ ++ I+ CI +N++FD + ++ Sbjct: 73 ISDEQLSKAP-DFSQVAKTIYDLIHD---CIFVAHNVKFDANLLAESLFFEGFE------ 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 R D +++ + Y + L L+ G++ +AH A AD Sbjct: 123 -LRTPRIDTVELAQVFYPTFE-------------KYNLSVLSSELGLDLSDAHTAIADAI 168 Query: 183 ATLALVWLIREKKPKLFEYLYD 204 AT L ++EK ++ + Sbjct: 169 ATAKLFLKLQEKISQIPLETLE 190 >gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] Length = 284 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 50/204 (24%), Gaps = 36/204 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + F + D ET VRV+ ++ DD + Sbjct: 3 KHTFTVIDIET--MTPERTSACALGLVRVEND-VIVQKFYSLIKPIPDDRTVT--NTHVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP+ + I + S ++ +N FD + + Sbjct: 58 GITPEMVENAP-TFQDLWPTIEHYIS---GQVLAAHNTSFDLDVLKKVSTHYGITIPITG 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + S T L + ++ HDA D Sbjct: 114 VVDTFS---------------------------LTHLSLDETCKVLHVDLGKHHDALCDA 146 Query: 182 YATLALVWLIREKKPKLFEYLYDY 205 A ++ ++ + + Sbjct: 147 TACAEIILVLSGVELPKPTESIPH 170 >gi|297559543|ref|YP_003678517.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843991|gb|ADH66011.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 216 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 25/137 (18%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59 M + V D E G D D + A + D + ++ +P P+A Sbjct: 1 MNDSLVWIDCEMTGLDFERDALIEVACLITDGELNILDEGVDVVIRP-------PQAALD 53 Query: 60 -----------ITGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDY 104 +G+ + L GV E I ++ + P + N+I D Sbjct: 54 RMGDFVRDMHTTSGLLEE--LDKGVSLQEAEDLVLEHIRRYVTEPRKAPLCGNSIATDRT 111 Query: 105 YSRNIFYRNFYDSYRWS 121 + R + Sbjct: 112 FLARDMKRIDEFLHYRM 128 >gi|148225871|ref|NP_001088822.1| REX2, RNA exonuclease 2 homolog [Xenopus laevis] gi|126631799|gb|AAI33811.1| LOC496097 protein [Xenopus laevis] Length = 186 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G D+ D + A + D + + K D+ L Sbjct: 5 MGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIKQPDELLDGMSDWCK 64 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + Q + + F P C + N++ D + R Sbjct: 65 EHHGKSGLTQAVRESRITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPRF 124 Query: 114 FYDSYRW 120 + Sbjct: 125 MRHLHYR 131 >gi|317495208|ref|ZP_07953578.1| exonuclease [Gemella moribillum M424] gi|316914630|gb|EFV36106.1| exonuclease [Gemella moribillum M424] Length = 623 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 30/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F I D E QFA ++D + I S ++ KP + +TGIT Sbjct: 10 FCIVDIELT----EEKEIIQFAAKKIDFNFRVINSIN-YYIKPIQSDITS-FVTDLTGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + S+ ++++ I+ + ++ D + F + + Sbjct: 64 NEILRDKP-SFRKVSKVLYEYIKDG---ILVCHGLQSDYLILKKHFQDIGIEY------S 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYA 183 + D +++ R +S++L DLA + N H+A DV A Sbjct: 114 PSMSLDTVELARLF-------------LPTQSSYRLSDLAASLNIYSSDNYHNAVIDVKA 160 Query: 184 TLALVWLI 191 T L+ I Sbjct: 161 TAKLLETI 168 >gi|119944051|ref|YP_941731.1| exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] gi|119862655|gb|ABM02132.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 228 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 46/178 (25%), Gaps = 22/178 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYLPDPEAVFITG 62 + D E G D D+ + + + + K ++ I G Sbjct: 42 TLLALDIEMTGLDPKKDQMVSIGIIPI-INAKIQPEFAQHKLIKIQGSV---GQSAVIHG 97 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + + E + + F ++ ++ + D + + ++ Sbjct: 98 VLDKDLADA-LPLEEALQWL---FEQCKDKVLVAHHAQLDLQFLQQSLSKSG-------- 145 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + S +L + NAH+A D Sbjct: 146 -----AHSFSMLAIDTLIIEKERELRKHQVLKTGSLRLNACRDRYNLPIYNAHNALTD 198 >gi|242064994|ref|XP_002453786.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor] gi|241933617|gb|EES06762.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor] Length = 246 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G D+ DR + A + D + I ++ + Sbjct: 67 LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVIGQSKDCLDNMGEWCKTHHA 126 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T ++ L+ + E + ++ F T ++ N++ D + + Sbjct: 127 ASGLT----ERVLQSELSEHDAEAKVLDFVRKHINSGTPLLAGNSVYVDLLFLKK 177 >gi|208806770|ref|ZP_03249107.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206] gi|208726571|gb|EDZ76172.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206] Length = 188 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881] gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881] Length = 228 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++ + F P + A+ TG Sbjct: 24 VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLEQAALDFTG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + + + + ++ +N FD + R Sbjct: 84 IDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLNAATDRA--- 140 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S + S +D + +Y + L A GI A Sbjct: 141 DIKRSPFHPFSSFDTATLAGLVYGQTV----------------LAKACEAAGIRFSQREA 184 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A D T L + + L + Sbjct: 185 HSALYDATRTAELFCSMVNRFKTLGGW 211 >gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] Length = 220 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 68/265 (25%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-VDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DIIPHYY------GSEWYVAHNASFDSRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T A Sbjct: 97 -----ICTMKLSRRL------WPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 L+ I E + + P + + FG R ++ VA Sbjct: 146 LLIDIMNTSGWTPEQMVEI-------------TGRPALLTTFSFGTYRGKA--VSEVAKR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|24372183|ref|NP_716225.1| oligoribonuclease [Shewanella oneidensis MR-1] gi|29611787|sp|Q8EJ78|ORN_SHEON RecName: Full=Oligoribonuclease gi|24346089|gb|AAN53670.1|AE015506_5 oligoribonuclease [Shewanella oneidensis MR-1] Length = 181 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V +D+ L D Sbjct: 6 NNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ V EAE + F + + N++ D + Sbjct: 66 HGESGLIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMCGNSVGQDRRFLNRYMRELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease [Lactobacillus crispatus ST1] gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus crispatus ST1] Length = 177 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V + ++ D + I I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQIHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE I + ++ +N RFD R R + Sbjct: 56 TAEDVKNAP-TMAEVWPHIKEL--YQPGMLVAAHNARFDTNVMRQSLARYGIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + KL ++ A +E + H+A +D A Sbjct: 108 --------------HYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEA 153 Query: 184 TLALVWLIREK 194 ++ E+ Sbjct: 154 CAGILIKQEEQ 164 >gi|332878806|ref|ZP_08446521.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683157|gb|EGJ56039.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 183 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 25/200 (12%) Query: 1 MTNHFVIYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 MTN +I D E G + + +D +I KP P Sbjct: 1 MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEISDNRGILVKPT-HSKISP 59 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T ITP+ R+GV + + + + + Y N + + R Sbjct: 60 FCTQLTTITPELVAREGVSFEKALQILKREYQAYQYTWASYGNYD-KNMLQKQCALRKLP 118 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 R N + + Q P R + + H Sbjct: 119 YPMRNEHIN-------------VKELFQEVTQHPKRLGMHQALNYLKI-----PLVGTHH 160 Query: 176 DAKADVYATLALVWLIREKK 195 K D Y ++ + + Sbjct: 161 RGKDDAYNIAKIMHCLSHYQ 180 >gi|295394431|ref|ZP_06804655.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030] gi|294972783|gb|EFG48634.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030] Length = 200 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 11/117 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFI 60 + V D E G ++ +D + A + D ++ KP + + Sbjct: 4 DKIVWIDCEMTGLELEVDELIEVAAIVTDFDLNPVDEGVDVIIKPSQRARENMNDFVTNM 63 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110 G+ + L G+ E + + + +G N++ D + + Sbjct: 64 HTTSGLIDK--LDAGMSVDEAATIVLDYIKKHVPEAGKAPLGGNSVGTDKTFLQKQM 118 >gi|323497579|ref|ZP_08102596.1| hypothetical protein VISI1226_22170 [Vibrio sinaloensis DSM 21326] gi|323317328|gb|EGA70322.1| hypothetical protein VISI1226_22170 [Vibrio sinaloensis DSM 21326] Length = 176 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 20/148 (13%) Query: 3 NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E T G + +D +I ++ KP +D + Sbjct: 4 NRIVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLAKGEIVKRAQYYVKPENDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 V +TGITP+K + G E + + + F N + DD Sbjct: 58 -SMFCVELTGITPRKIEKQGRPLEEVLKSMVKNFGGSNKIFASW---GRDDLVLAQECQD 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 + + N + + + + ++ Sbjct: 114 KGIEMPFKEFINLATLYRIQNRLKDKRI 141 >gi|50310933|ref|XP_455489.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644625|emb|CAG98197.1| KLLA0F08998p [Kluyveromyces lactis] Length = 306 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 16/221 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51 + V D E G D D+ + + D Q + + + Sbjct: 61 LKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWC 120 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + +T VE E I ++ ++ N++ D + N F Sbjct: 121 INQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGVLAGNSVHMDRLFMLNEFP 180 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + D+ +M +P + GA + K L ++ Sbjct: 181 KVIDHLFYR-------IIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQLKF 233 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 H K D + E + + NK Sbjct: 234 YENHYFKNDTETKEFVDRRKAEIQREAENAKEKEDNKRDSE 274 >gi|239941451|ref|ZP_04693388.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998] gi|239987915|ref|ZP_04708579.1| oligoribonuclease [Streptomyces roseosporus NRRL 11379] gi|291444893|ref|ZP_06584283.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998] gi|291347840|gb|EFE74744.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998] Length = 201 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G +A D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + EAE + + P + N++ D + Sbjct: 61 QMHTASGLLDELAGGTTLAEAEEQVLSYVREHVKEPGKAPLCGNSVGTDRGFLARDMRDL 120 Query: 114 FYDSYRW 120 + Sbjct: 121 ESYLHYR 127 >gi|148982513|ref|ZP_01816787.1| oligoribonuclease [Vibrionales bacterium SWAT-3] gi|145960438|gb|EDK25820.1| oligoribonuclease [Vibrionales bacterium SWAT-3] Length = 169 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P + E T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65 Query: 62 GITPQKAL---RDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 V E + + F I N+I D + Sbjct: 66 HTGSGLVKRIQESTVTEQDAIEQTIAFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|294506709|ref|YP_003570767.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8] gi|294343037|emb|CBH23815.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8] Length = 211 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 11/123 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D + V Q E + A A + GIT Sbjct: 42 VFLDTETTGSGP-QDAVIELG--VVAAQGEVL-----LHTLVAPLAPVTRGARRVHGITD 93 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + R+ + +D + Sbjct: 94 EELADAP-PFPTVADRLDTVLADAECVWTF--GPTYDRRMLLQTAALAECPETHRRIQDS 150 Query: 126 NSR 128 R Sbjct: 151 TWR 153 >gi|261867655|ref|YP_003255577.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412987|gb|ACX82358.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1] Length = 182 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + + K ++ + Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIRQPDALLNKMSEWCVK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + + + F I N++ D + Sbjct: 65 THTA---NGL-IERVKASKLTKRAAELQTLDFLKKYVPKGASPICGNSVAQDKRFLFKYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PELADYFHYRH 131 >gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 177 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V + ++ D + + I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE I + ++ +N RFD R R + Sbjct: 56 TAEDVKNAP-TMAEVWPHIKEL--YQPGMLVAAHNARFDTNVMRQSLARYGIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + KL ++ A +E + H+A +D A Sbjct: 108 --------------HYLVIDTLASSKLLEPELPDHKLDTVSEALSVELWHHHNALSDSEA 153 Query: 184 TLALVWLIREK 194 ++ E+ Sbjct: 154 CAGILIKQEEQ 164 >gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187] gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187] Length = 206 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D+ ++ T F +P + + A+ G Sbjct: 13 VVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEGANIEKAAIDFNG 72 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + + N I+ +N FD + R Sbjct: 73 IDPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDHSFMMAASERASLK 132 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + + D AH Sbjct: 133 RNPFHPFATFDTAALAGLALGQTVLAKACQTAAIPFDNN-----------------EAHS 175 Query: 177 AKADVYATLALVWLIREK 194 A D T L I K Sbjct: 176 ALYDTERTAELFCYIVNK 193 >gi|212633655|ref|YP_002310180.1| oligoribonuclease [Shewanella piezotolerans WP3] gi|212555139|gb|ACJ27593.1| Exonuclease [Shewanella piezotolerans WP3] Length = 181 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G + A+DR + A + D++ I V D+ L D Sbjct: 6 NNLIWVDLEMTGLEPAVDRIIEIATIVTDKELNIIAQGPVIAIHQTDEQLALMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ E + + +F S + N+I D + Sbjct: 66 HGESGLVERVKASQFSEEDAIAQTIEFLSQYVPAGASPMCGNSIGQDRRFLNRYMPALED 125 Query: 116 DSYRW 120 + Sbjct: 126 FFHYR 130 >gi|209731072|gb|ACI66405.1| Oligoribonuclease, mitochondrial precursor [Salmo salar] Length = 207 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 15/131 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYL 52 M V D E G D+ D+ + A + D + I +T D Sbjct: 10 MRQRMVWVDLEMTGLDIEKDQIIEMACIITDSELNVLSEGPNLIINTTSELLDGMDDWCK 69 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109 +T Q + + F P C + N++ D + Sbjct: 70 EHHGNSGLT----QAVRDSKISLQQAEYEFLSFIRQHTPPGHCPLAGNSVHADKKFLDKY 125 Query: 110 FYRNFYDSYRW 120 + + + Sbjct: 126 MPQFMHHLHYR 136 >gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 184 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 31/203 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+N F+ D+ET + V+V + ES + + + Sbjct: 1 MSNDAFIALDFET--ANGKRTSICAVGMVKV-VNHQITESFYTL---VNPNDYFSQQNIA 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + I P++ + QF + +N FD +D+ Sbjct: 55 VHSIHPEQVEDAP-TFQTVYPYMLQFI---GDLPVVAHNAAFDMNVLHESISAFGFDTPN 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ +Q R + L + ++ HDA Sbjct: 111 MTY--------------------FCSLQLSRRTVENHRYGLNYMMQYYNLDFHGHHDALN 150 Query: 180 DVYATLALVWLIREKKPKLFEYL 202 D A + + + + L L Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173 >gi|332638341|ref|ZP_08417204.1| DNA polymerase III subunit alpha [Weissella cibaria KACC 11862] Length = 183 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 58/202 (28%), Gaps = 39/202 (19%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60 +V++D E G + + + +++ + IE V P A F Sbjct: 7 KDYVVFDLEMNGSN----QIIEIGALKI-TTGKDIEKFSVIVNNPPKG---SGMASFKFI 58 Query: 61 -------TG-ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G IT G+ E R +F ++G+ + D + Sbjct: 59 SQSMGGEHGWITLDMIHN-GLSEERALSRFMKFVGEYP--VVGHAIVDGDVQLVKEG--- 112 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 W +D + + + L LA +E Sbjct: 113 -LRYHDLGKWHTNGKIFDTQQL-------------HGALNGNPNDISLSGLAATYDVEIG 158 Query: 173 NA-HDAKADVYATLALVWLIRE 193 H A AD ATLA+ ++ Sbjct: 159 KQKHRALADAKATLAVFSAMQR 180 >gi|291521153|emb|CBK79446.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Coprococcus catus GD/7] Length = 320 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 27/235 (11%) Query: 4 HFVIYDYETF------GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 ++V+ D+E G + + V++D ++I+ +P Sbjct: 2 NYVVVDFEWNQACYGKGSENRKIPFEIIEIGAVKLDENLKEIDRF-SRTIRPKVYKKLHY 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +TGIT ++ + F I D + Sbjct: 61 ITRDLTGITQEELCASDPFSY----VLVDFMLWCGKDYIFCTWGNMDLVELQRNMKYYGL 116 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 +++ R + A + S D K H Sbjct: 117 LDLL---KGPVKYYNVQKFFRLLCAHDASAVSLESAVDYFQLPK-----------EAGFH 162 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 A D T + I +++ K + Y+N I ++ + ++S +F Sbjct: 163 RAVNDAAYTADVFRRIDQEEAKKLYSIDYYQNPQSKGDEIHLRYDSYYKYISRVF 217 >gi|38704238|ref|NP_313168.2| oligoribonuclease [Escherichia coli O157:H7 str. Sakai] gi|161367457|ref|NP_290795.2| oligoribonuclease [Escherichia coli O157:H7 EDL933] gi|168747976|ref|ZP_02772998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113] gi|168755351|ref|ZP_02780358.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401] gi|168766441|ref|ZP_02791448.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486] gi|168774540|ref|ZP_02799547.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196] gi|168780594|ref|ZP_02805601.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076] gi|168784799|ref|ZP_02809806.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869] gi|168802329|ref|ZP_02827336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508] gi|195935954|ref|ZP_03081336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4024] gi|208812669|ref|ZP_03253998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045] gi|208819030|ref|ZP_03259350.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042] gi|209398620|ref|YP_002273707.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115] gi|217325417|ref|ZP_03441501.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588] gi|254796184|ref|YP_003081021.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359] gi|261225285|ref|ZP_05939566.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK2000] gi|261255463|ref|ZP_05947996.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK966] gi|291285577|ref|YP_003502395.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615] gi|20138827|sp|Q8XDP0|ORN_ECO57 RecName: Full=Oligoribonuclease gi|187769887|gb|EDU33731.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196] gi|188017565|gb|EDU55687.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113] gi|189001658|gb|EDU70644.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076] gi|189357409|gb|EDU75828.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401] gi|189363946|gb|EDU82365.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486] gi|189374804|gb|EDU93220.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869] gi|189375661|gb|EDU94077.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508] gi|208733946|gb|EDZ82633.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045] gi|208739153|gb|EDZ86835.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042] gi|209160020|gb|ACI37453.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115] gi|217321638|gb|EEC30062.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588] gi|254595584|gb|ACT74945.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359] gi|290765450|gb|ADD59411.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615] gi|320190703|gb|EFW65353.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str. EC1212] gi|320638923|gb|EFX08569.1| oligoribonuclease [Escherichia coli O157:H7 str. G5101] gi|320644292|gb|EFX13357.1| oligoribonuclease [Escherichia coli O157:H- str. 493-89] gi|320649610|gb|EFX18134.1| oligoribonuclease [Escherichia coli O157:H- str. H 2687] gi|320655006|gb|EFX22967.1| oligoribonuclease [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660513|gb|EFX27974.1| oligoribonuclease [Escherichia coli O55:H7 str. USDA 5905] gi|320665782|gb|EFX32819.1| oligoribonuclease [Escherichia coli O157:H7 str. LSU-61] gi|326341785|gb|EGD65568.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str. 1125] gi|326346640|gb|EGD70374.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str. 1044] Length = 181 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|117919043|ref|YP_868235.1| oligoribonuclease [Shewanella sp. ANA-3] gi|166216589|sp|A0KSR0|ORN_SHESA RecName: Full=Oligoribonuclease gi|117611375|gb|ABK46829.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] Length = 181 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V +DD L D Sbjct: 6 NNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + + EA+ + F + N++ D + Sbjct: 66 HGESGLIDRVRASQMNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|157147866|ref|YP_001455185.1| oligoribonuclease [Citrobacter koseri ATCC BAA-895] gi|166230513|sp|A8AMN6|ORN_CITK8 RecName: Full=Oligoribonuclease gi|157085071|gb|ABV14749.1| hypothetical protein CKO_03672 [Citrobacter koseri ATCC BAA-895] Length = 181 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|306819268|ref|ZP_07452979.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239] gi|304648050|gb|EFM45364.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239] Length = 208 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58 +T+ V D E G D+A D + + D +++ KP+ L + Sbjct: 8 LTDALVWVDCEMTGLDLATDELIEIGVIVTDFDLNPLDTGIDLLIKPSQTALDNMGDFVR 67 Query: 59 FIT---GITPQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + G+ + V EA + + +F + N++ D + + Sbjct: 68 EMHTKSGLLDELDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKKQM 124 >gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2] gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2] Length = 180 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + A V V R + + + + + I GI Sbjct: 5 NFIAMDFET--ANYQKHSACSLALVMV-RDSKIVGEYYTL---IQPETDFFWKNIQIHGI 58 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + + ++I Q++++ + +I +N FD D Y Sbjct: 59 HPEDVVNAPK-FPDIWKQIQQYYNLNS--LIVAHNAGFDTGVLA-----GCLDYYGIEQP 110 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 N + L +R P+ KL + I +N HDA D A Sbjct: 111 N----YLSLCTVRTSRKLYPEFEN----------HKLNTVCQQLQIPLLNHHDALEDSRA 156 Query: 184 TLALVWLIREK 194 ++ Sbjct: 157 CAQILLRQEND 167 >gi|332373288|gb|AEE61785.1| unknown [Dendroctonus ponderosae] Length = 220 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 V D E G +V D+ + A + D + + L V Sbjct: 43 ERLVWIDMEMTGLNVDQDKIMEVACIVTDTDLNIVAEGLEIVINQPKETLDNMHEWCVKQ 102 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G T + L+ + I F P+ + N++ D ++ + Sbjct: 103 HGKTGLTEACLKSQTSLEQAEDSIMDFLRAHVTPHCSPLAGNSVYMDRFFLIKYMPKVHD 162 Query: 116 DSYRW 120 + Sbjct: 163 YLHYR 167 >gi|289670069|ref|ZP_06491144.1| ribonuclease T [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 211 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 60/212 (28%), Gaps = 41/212 (19%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51 M+ F V+ D ET G D + A V ++ + ++ PA Sbjct: 16 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLV-PAPGL 74 Query: 52 LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101 DP+++ ITGI L A+ + I+ +N F Sbjct: 75 EIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHF 130 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + R + + S +D + + Y G T Sbjct: 131 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 173 Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 174 AQAAGLDWNAADAHSAVYDTEQTARLFCTIAN 205 >gi|262401567|ref|ZP_06078134.1| oligoribonuclease [Vibrio sp. RC586] gi|262352282|gb|EEZ01411.1| oligoribonuclease [Vibrio sp. RC586] Length = 181 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 + + D E G D + + A + D + + E K + Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFY 111 A + + V E + + F I N+I D + Sbjct: 66 HTASGL----VARVRASQVSEEQAIDQTLAFLKQWVPERKSPICGNSIGQDRRFLYKHMP 121 Query: 112 RNFYDSYRW 120 R + Sbjct: 122 RLEAYFHYR 130 >gi|255324289|ref|ZP_05365410.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141] gi|255298619|gb|EET77915.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141] Length = 215 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 8/118 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 + V D E G D + A V D + +D L ++ + Sbjct: 14 DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGEGIDLVVHATEDELAQMDSFVTQM 73 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 + ++ E + + + + N+I D + R R Sbjct: 74 HAKSGLDKEIRESTTSIGEAEDAVLALINEHCDPEHPAPLAGNSIATDRTFIRTYMPR 131 >gi|311741236|ref|ZP_07715060.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303406|gb|EFQ79485.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035] Length = 215 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 + V D E G D + A V D + ++ L ++ + Sbjct: 14 DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGEGIDLVVHATEEELAQMDSFVTEM 73 Query: 61 T---GITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G+ + G E I+++ + + N+I D + R R Sbjct: 74 HASSGLDKEICESTTSIGEAEDAVLALINEYCDPEHPAPLAGNSIATDRTFIRTYMPR 131 >gi|120598470|ref|YP_963044.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|120558563|gb|ABM24490.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] Length = 223 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 20/172 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D E G D D+ V ++ +E + ++ I GI Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVIPLEGALQKLVQIRGSV---GQSATIHGILDNHL 97 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 ++ +E + F + ++ ++ D + + + Sbjct: 98 VQAVTIEDAMAW----FIAKTRGRVLVAHHSPLDCRFLQQDILA------IYHQAVFLPS 147 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + I+ S +L G+ +AH A D Sbjct: 148 IDTLMLEKRRLLRGHHAIK-------EGSLRLGACRERYGLPVYSAHSALTD 192 >gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] Length = 219 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 67/266 (25%), Gaps = 54/266 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET + A V + + D P+A+ I IT + Sbjct: 4 VIDTETCDL---QGGVVEIASVDI-VDGKITNPMSHL---IRPDRPISPQAMAIHRITEE 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E + + +N F R W Sbjct: 57 MVADKPWIE-EVVP-----LYQGSAWYVAHN----------ASFDRRVLPEMNGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVATP----PGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246 L+ I + + + + L F + +A +A + Sbjct: 146 LLIDIINTSGWTPDQMAEITGRPALLT---------------TFTFGKYRGKPVAEIAQN 190 Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDSV 271 P Y + + ++ L Sbjct: 191 DPGYLRWLFNNLDNMSPQLRLTLKHW 216 >gi|92113002|ref|YP_572930.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM 3043] gi|91796092|gb|ABE58231.1| Exonuclease [Chromohalobacter salexigens DSM 3043] Length = 205 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 20/186 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET D A V+V R + ++E + +++ I G+ Sbjct: 32 IALDCETTDLDPRQADLVAIAAVKV-RDGRVL-TSESLDLRLQRPDSLSSDSIRIHGLRG 89 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 L G + + F N ++G+ +R++ R +D + Sbjct: 90 VDLLG-GEALGDALNTLLDFI--GNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRT---- 142 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +DV R + ++ D + + ++ A G+ + H A D T Sbjct: 143 ------IDVCRLYA-----RERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTA 191 Query: 186 ALVWLI 191 + + Sbjct: 192 LMYLRL 197 >gi|71064966|ref|YP_263693.1| DNA polymerase III subunit epsilon [Psychrobacter arcticus 273-4] gi|71037951|gb|AAZ18259.1| probable DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] Length = 203 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 19/187 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D E G + A + ++ + C+P +P + + I G+ Sbjct: 36 VAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPP--VMPKSDTIVIHGLRT 93 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + F + + D + + R Sbjct: 94 ADVEHA-MSYDEMLSLLLPFI---GNRPLVGFFPQIDVGFLNPLVKRYMGTHLPNE---- 145 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + I + + S+ + + L + I + HDA D T Sbjct: 146 ---------VIDIRSLYSRRMMGRSQGLPSQAQHLNSILKHYNIPELGTHDAYNDAIMTA 196 Query: 186 ALVWLIR 192 +R Sbjct: 197 MAFLHVR 203 >gi|59712936|ref|YP_205712.1| oligoribonuclease [Vibrio fischeri ES114] gi|81310874|sp|Q5E2C2|ORN_VIBF1 RecName: Full=Oligoribonuclease gi|59481037|gb|AAW86824.1| oligoribonuclease [Vibrio fischeri ES114] Length = 181 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 30/125 (24%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D Q + + +P ++ T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQPEEELAKMDNWCTNT 65 Query: 62 GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + E F I N+I D + R Sbjct: 66 HTNSGLVARVQESKYDEEAAIAETIAFLEQWVPKGVSPICGNSIGQDRRFLYKHMPRLEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] Length = 223 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 50/184 (27%), Gaps = 33/184 (17%) Query: 20 DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 R + V E I F D L D EA+ + GIT + Sbjct: 12 HRIVEIGAV------EIINRKLTGNHFHVYIKPDRLIDLEAIDVHGITDEFLYDKPE--- 62 Query: 77 EFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVM 135 + IH +F + +N FD + F S+ + L Sbjct: 63 --YKDIHDEFLEFIKGAELVAHNAPFDVGFMDYEF----------------SKLNKLIGT 104 Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYATLALVWLIRE 193 Y D + + L L GI+ H H A D + L+ Sbjct: 105 TDQYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG 164 Query: 194 KKPK 197 + Sbjct: 165 GQTS 168 >gi|12519147|gb|AAG59361.1|AE005649_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13364618|dbj|BAB38564.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209750348|gb|ACI73481.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750350|gb|ACI73482.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750352|gb|ACI73483.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750354|gb|ACI73484.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750356|gb|ACI73485.1| hypothetical protein ECs5141 [Escherichia coli] Length = 204 Score = 57.9 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65 >gi|254509115|ref|ZP_05121216.1| oligoribonuclease [Vibrio parahaemolyticus 16] gi|219547953|gb|EED24977.1| oligoribonuclease [Vibrio parahaemolyticus 16] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P + E T Sbjct: 6 QNLIWMDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPESELEKMDEWCTTT 65 Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + V E + R+ +F I N+I D + Sbjct: 66 HTGSGLVARVRASQVTEQDAIRQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|94676725|ref|YP_589014.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|172046199|sp|Q1LSQ0|ORN_BAUCH RecName: Full=Oligoribonuclease gi|94219875|gb|ABF14034.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 184 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 19/165 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD--YLPDPEAVFI 60 ++ + D E G + DR + A + D I V +++ L + + I Sbjct: 5 HNLIWIDLEMTGLNPEQDRILEIATLITDANLNIIAEGPVLAIHQSEEQLKLMNTWNIRI 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ +K + + E + + F I N+I D + Sbjct: 65 HTANGL-IEKVRKSTLNEETAAAQTIAFLQEWVPAGKSPICGNSISQDRRFLYR------ 117 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 + LDV + + S K Sbjct: 118 ----YMPILESYFHYRCLDVSTLQELARRWKPKIMAGIKKKNSHK 158 >gi|90022321|ref|YP_528148.1| oligoribonuclease [Saccharophagus degradans 2-40] gi|89951921|gb|ABD81936.1| Exonuclease [Saccharophagus degradans 2-40] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G D + A + D Q + + + D Sbjct: 6 NNLIWIDLEMTGLVPDRDVIIEIATIVTDAQLNVLAEGPMLAIAQPKAVMDGMDEWNTNQ 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ L V A ++ +F I N+I D + R Sbjct: 66 HGKSGLTERVLNSAVSTAMAEQQTIEFLQQWVPAGKSPICGNSIGQDRRFLARYMPRLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|254787466|ref|YP_003074895.1| oligoribonuclease [Teredinibacter turnerae T7901] gi|237686441|gb|ACR13705.1| oligoribonuclease [Teredinibacter turnerae T7901] Length = 182 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDY-LPDPEAVFI 60 N+ + D E G D + A V D + + +P L D Sbjct: 6 NNLIWVDLEMTGLVPERDFIIEIATVVTDEHLNILAEGPVMAIHQPDAVLDLMDEWCTNQ 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + Q+ V A F + N+I D + + + Sbjct: 66 HGKSGLTQRVRDSDVTTANAEVATLAFLCEWVPAGKSPMCGNSIGQDRRFLQRFMPKLAD 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. Langeland] gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. Langeland] gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. 230613] Length = 195 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 10/197 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + Q D + E D + A I Sbjct: 1 MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVFFAKNFFFDVDYIEESAEAI 56 Query: 61 TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G + +K G + + I + I +N + + N + Sbjct: 57 HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114 Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + R P + + L+ + V HD Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174 Query: 177 AKADVYATLALVWLIRE 193 A+ DV A ++ + + Sbjct: 175 ARYDVAALVSCYYRAKR 191 >gi|323491900|ref|ZP_08097072.1| oligoribonuclease [Vibrio brasiliensis LMG 20546] gi|323313843|gb|EGA66935.1| oligoribonuclease [Vibrio brasiliensis LMG 20546] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D + + + +P ++ E T Sbjct: 6 QNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQPEEELQKMDEWCTTT 65 Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + E E R+ +F I N++ D + Sbjct: 66 HTGSGLVDRIRESKIDEQEAIRQTIEFLEKWVPKGKSPICGNSVGQDRRFLYKHMPELEQ 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|139438610|ref|ZP_01772126.1| Hypothetical protein COLAER_01124 [Collinsella aerofaciens ATCC 25986] gi|133776149|gb|EBA39969.1| Hypothetical protein COLAER_01124 [Collinsella aerofaciens ATCC 25986] Length = 206 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 23/194 (11%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + V++D + F + + P +TGI+ Sbjct: 2 RNEIIEVGAVKLDYHGNVMGEFSQFVQTEFTEGVAFP-VRELTGISAVDTAMAD-PLYMV 59 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 +R+ + + I+ ++ + + ++ W + + + + Sbjct: 60 IKRLSDWIGRYSAQIVCWSGTDRRQLMTECQAKQIDLAAFPTDWADLQAFYTSI------ 113 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNAHDAKADVYATLALVWLIREK 194 L D A GIE +AH A AD T L+ + + Sbjct: 114 -----------MDVGSHECVSLNDAATWFGIEFDESTGHAHSALADARVTAKLLKQVMDG 162 Query: 195 KPKLFEYLYDYRNK 208 ++ + R + Sbjct: 163 DYRVSPRAQEIRQR 176 >gi|331665829|ref|ZP_08366723.1| oligoribonuclease [Escherichia coli TA143] gi|331056880|gb|EGI28874.1| oligoribonuclease [Escherichia coli TA143] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|262371112|ref|ZP_06064434.1| oligoribonuclease [Acinetobacter johnsonii SH046] gi|262313998|gb|EEY95043.1| oligoribonuclease [Acinetobacter johnsonii SH046] Length = 184 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 11/131 (8%) Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V D L D Sbjct: 1 MSSTADTRLIWIDLEMTGLDTDNDQIIEVATIVTDDNLNILAEGPVLAVHQPDRVLNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + ++ +F + + N+I D + + Sbjct: 61 EWNTRQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPEMEQYFHYR 131 >gi|145631577|ref|ZP_01787343.1| oligoribonuclease [Haemophilus influenzae R3021] gi|144982777|gb|EDJ90303.1| oligoribonuclease [Haemophilus influenzae R3021] Length = 182 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 7/127 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D +R + A + D+ + V D L + Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDGLLNKMNDWCQK 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ + E + F I N+I D + Sbjct: 65 THSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLA 124 Query: 115 YDSYRWS 121 + Sbjct: 125 DYFHYRH 131 >gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 961-5945] Length = 405 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 26/166 (15%) Query: 46 KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 V +TGI+ V AE + + C++ +N RFD + Sbjct: 1 MVNPQKPIPQFVVGLTGISDGMVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTF 56 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 ++ F+R +L ++ P + L + Sbjct: 57 LKHEFHRVGI----------GFSSPVLCSVQLSRCLYPQFYK----------HSLDSIIE 96 Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKK--PKLFEYLYDYRNKN 209 GI + H A ADV A + + + N Sbjct: 97 RLGIVVEDRHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPK 142 >gi|289424061|ref|ZP_06425847.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289155486|gb|EFD04165.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 480 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 46/257 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-------- 52 + +V +D E G + + + + +V +E ++ P + Sbjct: 18 LPKSYVSFDLEATG-NSKFNYMIEISAFKV-IDFEVVDEYSSLIRPPRSRKVTKSSRLLS 75 Query: 53 -----------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101 D +TGI + EA+ ++ F I+ + + Sbjct: 76 ECEEFGDKIYYIDKFIESLTGIDNISIHKAEK-EADVIKKFRDFV---GDSILVGHGVNN 131 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D ++ + R F + + + + + LD + L Sbjct: 132 DINLLKDTYMRVFGEEFTNKYIDTQALGVFLD---------------------DREYSLV 170 Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 +L IE+++ H A +D Y T + + + + D N + + QN Sbjct: 171 NLCNKYSIENIDTHRASSDAYRTNLCYINLYKDIEAKYSSIPDKLFANWIEDRHNKQNRI 230 Query: 222 PLVHVSGMFGASRSNTA 238 A N+ Sbjct: 231 LKNRTMKSLNAKNWNSH 247 >gi|146088911|ref|XP_001466179.1| hypothetical protein [Leishmania infantum JPCM5] gi|134070281|emb|CAM68618.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 509 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 61/226 (26%), Gaps = 29/226 (12%) Query: 8 YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D E G D + + ++ T +P P +T Sbjct: 93 FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVQPVCGRKQGPGVEELTH 147 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++G+ AE ++ F P I + + +W+ Sbjct: 148 ITDMMLEKEGIPFAEAWQQFLNFVQTPQPDEI--SGSEERILLLSHGGKLADVSLIKWTL 205 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANG-IEHVNAHDAKA 179 + + V D + D S+KL DL + AH A Sbjct: 206 EKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLVDLVQWLHIPPTLPAHRAGN 265 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 D T ++ LY + ++ + + P Sbjct: 266 DARMT--------------WDALYHTLLRYGDDEMAPREQLVPRFF 297 >gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] Length = 211 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + T + P + + A+ G Sbjct: 18 VIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGANLEKAALEFNG 77 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P ALR + E E + + + + ++ +N FD + R+ Sbjct: 78 IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + +D + G T A + AH Sbjct: 138 ---RTPFHPFVSFDTTTLA--------------GLALGQTVLVKACQAANISFDQSEAHS 180 Query: 177 AKADVYATLALVWLIREK 194 A D T L I K Sbjct: 181 ALYDTQKTAELYCYIVNK 198 >gi|302865700|ref|YP_003834337.1| exonuclease RNase T and DNA polymerase III [Micromonospora aurantiaca ATCC 27029] gi|302568559|gb|ADL44761.1| Exonuclease RNase T and DNA polymerase III [Micromonospora aurantiaca ATCC 27029] Length = 196 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 12/156 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G D+ D + A + D + D+ L PE V Sbjct: 1 MADLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVR 60 Query: 60 I----TGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 +G+T ++ V AE + + P T + N+I D + Sbjct: 61 TMHAKSGLT-EEVRLSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMT 119 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 R D++ S L + + Sbjct: 120 R--LDAHLHYRMIDVSSIKELCRRWYPRVYFGQPQK 153 >gi|293604208|ref|ZP_06686616.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553] gi|292817433|gb|EFF76506.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---AVF 59 N V D E G D +R + A V + + V D L D Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVIH-QPDTLLDAMDNWNKS 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + K V E++ + F + + N I D + R Sbjct: 65 THGKSGLIDKVRASTVSESQAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYMPRLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 QFFHYR 130 >gi|294665061|ref|ZP_06730367.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605179|gb|EFF48524.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 194 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 42/204 (20%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A + D Q + E+ P + EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 + Q+ L V A+ + F + N+I D + Sbjct: 65 NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS 124 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R + D+ + ++P ANG Sbjct: 125 RLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANGFAK 157 Query: 172 VNAHDAKADVYATLALVWLIREKK 195 +AH A +DV ++ + R+ Sbjct: 158 SSAHTALSDVRDSIDELRHYRQFM 181 >gi|317049763|ref|YP_004117411.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] gi|316951380|gb|ADU70855.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] Length = 182 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 7 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 43 >gi|170766878|ref|ZP_02901331.1| oligoribonuclease [Escherichia albertii TW07627] gi|170124316|gb|EDS93247.1| oligoribonuclease [Escherichia albertii TW07627] gi|315617577|gb|EFU98183.1| exonuclease family protein [Escherichia coli 3431] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|269977107|ref|ZP_06184081.1| oligoribonuclease [Mobiluncus mulieris 28-1] gi|307700139|ref|ZP_07637185.1| oligoribonuclease [Mobiluncus mulieris FB024-16] gi|269934938|gb|EEZ91498.1| oligoribonuclease [Mobiluncus mulieris 28-1] gi|307614688|gb|EFN93911.1| oligoribonuclease [Mobiluncus mulieris FB024-16] Length = 208 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 7/117 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58 +T+ V D E G D+A D + + D +++ KP+ L + Sbjct: 8 LTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMGDFVR 67 Query: 59 FIT---GITPQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + G+ + V EA + + +F + N++ D + + Sbjct: 68 EMHTKSGLLDELDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKKQM 124 >gi|144898742|emb|CAM75606.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum gryphiswaldense MSR-1] Length = 173 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 48/184 (26%), Gaps = 31/184 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D+ET D D A V + E+ P + I GIT Sbjct: 3 FIALDFET--ADNGRDSACSLALAVV-KNGTVAETWHRLIRPPRASQMF----THIHGIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 F I + +N FD + + + + Sbjct: 56 WDMVKDQP-DFGHFWPEIRDLIDAAP--FLAAHNAPFDKGVLAECCRAHGHGAPLTPF-- 110 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + V R + P KL D+ N HDA +D A Sbjct: 111 ----VCTVRVARDTWNLRPT--------------KLPDVCRFLAQPL-NHHDALSDAVAC 151 Query: 185 LALV 188 ++ Sbjct: 152 AEIM 155 >gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H] gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H] Length = 231 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 60/199 (30%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE--KIESTEVFFCKPADDYLPDPEAVFIT 61 V+ D ET G + D + A + +D I+ T F +P + +P+A+ T Sbjct: 34 VVIDVETAGFNSQTDALLELAASVLHLDEDTGDFSIDETIQFNIEPFEGANLEPKALEFT 93 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 GI P LR V E E + + + II +N FD + R Sbjct: 94 GIDPTNPLRGAVDEDEALKDLFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATERCKI 153 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + +A + AH Sbjct: 154 KRSPFHSFVSFDTTTLAGLALGQTVLAKAC-----------------IAAKIDFNNSEAH 196 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 197 SALYDTEKTAELFCHIVNK 215 >gi|21242783|ref|NP_642365.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306] gi|23821917|sp|Q8PKW8|ORN_XANAC RecName: Full=Oligoribonuclease gi|21108265|gb|AAM36901.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306] Length = 194 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A + D Q + E+ P + EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 + Q+ + V A+ + F S + N+I D + Sbjct: 65 NRNQHRRSGLWQRVIDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 124 Query: 112 RNFYDSYRW 120 R + Sbjct: 125 RLERYFHYR 133 >gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + +R + E T F +P + +P A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|315125481|ref|YP_004067484.1| oligoribonuclease [Pseudoalteromonas sp. SM9913] gi|315013994|gb|ADT67332.1| oligoribonuclease [Pseudoalteromonas sp. SM9913] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 8/130 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 ++ + D E G + D+ + A V D + +D+ L D Sbjct: 5 KSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSDELLDGMDEWCTT 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + EA + F + N+I D + + R Sbjct: 65 QHGKSGLTARCKASTFDEAYAVEQTLAFLKQWVPAGASPMCGNSIGQDRRFMNK-YMREL 123 Query: 115 YDSYRWSWDN 124 D + + + Sbjct: 124 EDFFHYRNLD 133 >gi|229597251|ref|YP_001908888.2| oligoribonuclease [Erwinia tasmaniensis Et1/99] Length = 187 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G + DR + A + D + Sbjct: 6 NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 42 >gi|156933577|ref|YP_001437493.1| exodeoxyribonuclease X [Cronobacter sakazakii ATCC BAA-894] gi|156531831|gb|ABU76657.1| hypothetical protein ESA_01397 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 70/265 (26%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V + + D +A+ I IT Sbjct: 4 IIDTETCGL---QGGVVEVASVDI-IDGAIVNPMSDL---VRPDRPISHQAMAIHKITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E R H + +N FD R W Sbjct: 57 MVADKPYIE-EVIPRYH------GSQWYVAHNASFD---------RKVLPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KLQ E ++ H A D Y T A Sbjct: 97 --ICTVKLARRLWP-----GIRYSNMGLYKSLKLQVETP----EGLHHHRALFDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV-AW 245 L+ I + E + + + QL + + +A + Sbjct: 146 LLLEIMKVSGWTPEEMVNITGRPQLIATLP---------------FGKYRGEPVADIAGR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y ++ + + L Sbjct: 191 DPGYLRWMLNNVKQLNPDLRLTLKH 215 >gi|119469142|ref|ZP_01612126.1| oligoribonuclease [Alteromonadales bacterium TW-7] gi|119447394|gb|EAW28662.1| oligoribonuclease [Alteromonadales bacterium TW-7] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 8/130 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 ++ + D E G + A D+ + A V D + +D+ L D Sbjct: 5 KSNLIWLDLEMTGLEPATDKILEIATVVTDADLNILAEGPTIAIHQSDELLNGMDEWCTT 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + E + +F + N+I D + + R Sbjct: 65 QHGKSGLTARCKASAFDEEYAVAQTLEFLKQWVPAGASPMCGNSIGQDRRFMNK-YMREL 123 Query: 115 YDSYRWSWDN 124 D + + + Sbjct: 124 EDFFHYRNLD 133 >gi|114707008|ref|ZP_01439907.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506] gi|114537558|gb|EAU40683.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506] Length = 266 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + D + V +D I + FC P + A + IT + Sbjct: 25 VIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDP-GGAVISDGARRVHQITDE 83 Query: 67 KALRDGVVEAEFSRRIH 83 + ++ + + Sbjct: 84 MLVGAP-PFSDAVKPFN 99 >gi|58581832|ref|YP_200848.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623734|ref|YP_451106.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576613|ref|YP_001913542.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A] gi|81311869|sp|Q5H0Q8|ORN_XANOR RecName: Full=Oligoribonuclease gi|123522125|sp|Q2P3P5|ORN_XANOM RecName: Full=Oligoribonuclease gi|58426426|gb|AAW75463.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367674|dbj|BAE68832.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521065|gb|ACD59010.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A] Length = 194 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 42/204 (20%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A + D Q + E+ P + EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 + Q+ L V A+ + F + N+I D + Sbjct: 65 NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS 124 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R + D+ + ++P ANG Sbjct: 125 RLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANGFAK 157 Query: 172 VNAHDAKADVYATLALVWLIREKK 195 +AH A +DV ++ + R+ Sbjct: 158 SSAHTALSDVRDSINELRHYRQFM 181 >gi|58582091|ref|YP_201107.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623997|ref|YP_451369.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576299|ref|YP_001913228.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426685|gb|AAW75722.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367937|dbj|BAE69095.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520751|gb|ACD58696.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A] Length = 211 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 58/207 (28%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52 M+ F V+ D ET G D + A V + D T PA Sbjct: 16 MSRRFRGYLPVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLE 75 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 DP+++ ITGI A ++ + I+ +N FD + Sbjct: 76 IDPKSLEITGIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFL 135 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + S +D + + Y G T A Sbjct: 136 NAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAAQAAG 178 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 179 LDWNAADAHSAVYDTEQTARLFCKIAN 205 >gi|251792379|ref|YP_003007105.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700] gi|247533772|gb|ACS97018.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700] Length = 181 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + + K ++ + Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELLNKMSEWCVK 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 A G+ ++ + E + F T I N++ D + Sbjct: 65 THTA---NGL-VERVKMSKLNERAAELQTLGFLKKYVPKGTSPICGNSVAQDKRFLFKYM 120 Query: 111 YRNFYDSYRWS 121 + Sbjct: 121 PELADYFHYRH 131 >gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14] gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14] Length = 163 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 28/190 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + V V R E ++S +P +Y + + Sbjct: 1 MQDFVSIDFET--ANNERSSVCSVGIVIV-RNGEIVDSFYSLI-QPEPNY-YNYWCSQVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ + V + +I + +N FD+ + Sbjct: 56 GLCHEDTDDAPV-FPKVWAQIEPLIEN---LPLVAHNKPFDEGC---------LKAVFRV 102 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + ++ D + PD +LQ +A A G + H A AD Sbjct: 103 YQMDYPDYEFYDTLCVSRRVLPDLEN----------HQLQTVAAACGYCLEDHHHALADA 152 Query: 182 YATLALVWLI 191 A + I Sbjct: 153 EACAWIAREI 162 >gi|149377531|ref|ZP_01895272.1| oligoribonuclease [Marinobacter algicola DG893] gi|149358223|gb|EDM46704.1| oligoribonuclease [Marinobacter algicola DG893] Length = 180 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 7/108 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 V D E G D +R + A + D IE V +D L D G Sbjct: 7 LVWIDLEMTGLDPEKERIIEIATIVTDSDLNTIEEGPVIAVHQSDKLLSEMDEWCTRTHG 66 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105 + Q+ E + ++ +F P + N+I D + Sbjct: 67 ESGLTQRVKDSKYGEIDAEQKTLEFLQRYLEPGQSPLCGNSIGQDRRF 114 >gi|269955883|ref|YP_003325672.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] gi|269304564|gb|ACZ30114.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] Length = 212 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 7/113 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA----DDYLPDPEAV 58 + V D E G D D + A V D + ++ P + + Sbjct: 8 DRIVWIDCEMTGLDARADALIEVAAVVTDSELNVLDDGIDVLIAPPAAALEGMGDFVRTM 67 Query: 59 FIT-GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 T G+ + A + EAE I ++ + N++ D + Sbjct: 68 HTTSGLLDELAAGATLAEAEQQVLAYIKRWVPDAGKAPLAGNSVGTDKMFLDR 120 >gi|261253256|ref|ZP_05945829.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891] gi|260936647|gb|EEX92636.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891] Length = 176 Score = 57.5 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 23/152 (15%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPA 48 M ++ V+ +D E T G + +D E ++ + ++ KP Sbjct: 1 MNHNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVNGEIVKRAQ-YYVKPE 53 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 D + +TGITP+K + G E + + + F N + DD Sbjct: 54 HDEV-SLFCSQLTGITPRKVEKQGRPLEEVLKSMVKNFGGANKIYAAW---GRDDRILIK 109 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 + + N + + + + ++ Sbjct: 110 ECQDKGIEMPFNEFINLATLYRIQNRLKDKRI 141 >gi|325921805|ref|ZP_08183622.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri ATCC 19865] gi|325547682|gb|EGD18719.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri ATCC 19865] Length = 212 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A + D Q + E+ P + EA+ Sbjct: 27 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLEKL----EAMDEW 82 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 + Q+ L V A+ + F S + N+I D + Sbjct: 83 NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 142 Query: 112 RNFYDSYRW 120 R + Sbjct: 143 RLERYFHYR 151 >gi|323975494|gb|EGB70595.1| exonuclease [Escherichia coli TW10509] Length = 181 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|237729098|ref|ZP_04559579.1| oligoribonuclease [Citrobacter sp. 30_2] gi|226908827|gb|EEH94745.1| oligoribonuclease [Citrobacter sp. 30_2] Length = 185 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 46 >gi|188030133|emb|CAO98019.1| Oligoribonuclease [Erwinia tasmaniensis Et1/99] Length = 193 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G + DR + A + D + Sbjct: 12 NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 48 >gi|158428766|pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease gi|158428767|pdb|2IGI|B Chain B, Crystal Structure Of E. Coli Oligoribonuclease Length = 180 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 41 >gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619] gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619] Length = 224 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 31/215 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYL 52 M F V+ D ET G + A D + A V + D + F+ +P + Sbjct: 22 MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGAN 81 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 + A+ TGI A+ + + R + + I+ +N FD + Sbjct: 82 IEAAALEFTGIKLDHPLRMAVSEENALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN + + L + + DG Sbjct: 142 NAAVTRNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201 AH A+ D T L I + ++ + Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219 >gi|148546859|ref|YP_001266961.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1] gi|148510917|gb|ABQ77777.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1] Length = 183 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 51/188 (27%), Gaps = 23/188 (12%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V R+ +++ + F KP P +T Sbjct: 5 LVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVKPRRRPQLTPFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120 I+ E ++ + + + +D + ++ DS Sbjct: 64 HISQADVDNA-APFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQHGLDSLLR 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + N + +G LA + H A D Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGA--------------LQLAGMHFC--GQQHRALED 166 Query: 181 VYATLALV 188 T L+ Sbjct: 167 ARNTARLL 174 >gi|119593281|gb|EAW72875.1| hCG2005011, isoform CRA_g [Homo sapiens] Length = 284 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 56 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 113 Query: 48 ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + + G + R + F S C++ +N +D Sbjct: 114 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 171 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + G + G + L Sbjct: 172 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 222 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 223 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 251 >gi|109716243|gb|ABG43103.1| 3'-5' exonuclease TREX2 long form [Homo sapiens] Length = 278 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 50 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 107 Query: 48 ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + + G + R + F S C++ +N +D Sbjct: 108 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 165 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + G + G + L Sbjct: 166 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 216 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 217 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 245 >gi|161485837|ref|NP_710030.3| oligoribonuclease [Shigella flexneri 2a str. 301] gi|161486369|ref|NP_839708.2| oligoribonuclease [Shigella flexneri 2a str. 2457T] gi|229774924|ref|YP_691603.2| oligoribonuclease [Shigella flexneri 5 str. 8401] gi|41017443|sp|Q83IJ9|ORN_SHIFL RecName: Full=Oligoribonuclease gi|313646361|gb|EFS10823.1| exonuclease family protein [Shigella flexneri 2a str. 2457T] gi|332749041|gb|EGJ79464.1| exonuclease family protein [Shigella flexneri K-671] gi|332749309|gb|EGJ79730.1| exonuclease family protein [Shigella flexneri 4343-70] gi|332761883|gb|EGJ92157.1| exonuclease family protein [Shigella flexneri 2747-71] gi|332763212|gb|EGJ93455.1| oligoribonuclease monomer [Shigella flexneri 2930-71] gi|333009212|gb|EGK28668.1| exonuclease family protein [Shigella flexneri K-218] gi|333010312|gb|EGK29745.1| exonuclease family protein [Shigella flexneri VA-6] gi|333011977|gb|EGK31362.1| exonuclease family protein [Shigella flexneri K-304] Length = 181 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|63079718|ref|NP_542432.2| three prime repair exonuclease 2 [Homo sapiens] gi|114690568|ref|XP_001137293.1| PREDICTED: three prime repair exonuclease 2 isoform 1 [Pan troglodytes] gi|332861931|ref|XP_003317815.1| PREDICTED: three prime repair exonuclease 2 isoform 2 [Pan troglodytes] gi|12751317|gb|AAK07617.1|AF319570_2 3'-5' exonuclease TREX2 [Homo sapiens] gi|12751323|gb|AAK07620.1|AF319573_2 3'-5' exonuclease TREX2 [Homo sapiens] gi|5731109|gb|AAD48776.1| 3'-5' exonuclease TREX2 [Homo sapiens] gi|71648780|gb|AAZ38719.1| three prime repair exonuclease 2 [Homo sapiens] gi|162317630|gb|AAI56245.1| Three prime repair exonuclease 2 [synthetic construct] gi|162318146|gb|AAI57022.1| Three prime repair exonuclease 2 [synthetic construct] gi|261860926|dbj|BAI46985.1| three prime repair exonuclease 2 [synthetic construct] Length = 236 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 8 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 65 Query: 48 ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + + G + R + F S C++ +N +D Sbjct: 66 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 123 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + G + G + L Sbjct: 124 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 174 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 175 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 203 >gi|47606206|sp|Q9BQ50|TREX2_HUMAN RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5' exonuclease TREX2 gi|12751319|gb|AAK07618.1|AF319571_2 3'-5' exonuclease TREX2-like protein [Homo sapiens] gi|12751321|gb|AAK07619.1|AF319572_2 3'-5' exonuclease TREX2-like protein [Homo sapiens] gi|119593276|gb|EAW72870.1| hCG2005011, isoform CRA_c [Homo sapiens] Length = 279 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 51 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 108 Query: 48 ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + + G + R + F S C++ +N +D Sbjct: 109 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 166 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + G + G + L Sbjct: 167 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 217 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 218 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 246 >gi|150015369|ref|YP_001307623.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149901834|gb|ABR32667.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 303 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 19/175 (10%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + V+VD+ + I+ + KP + +P IT I GV E Sbjct: 36 ENEIIEIGAVKVDKYMKPIKEIRE-YIKPKIFPVINPIVTEITKIDMDILNEKGVSFEEA 94 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 ++ F + ++ N + N+ D N D+ + + I Sbjct: 95 ISKLKDMFEDGD--VLCSWAKDDVAELIINAHHYNYNDLRWL-----NEYLDIQEYVTKI 147 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193 A + D+ ++ HDA D T+ + + Sbjct: 148 LAHKKALGLKSALDELKIK-----------VDDTKLHDALNDAKYTVEVFRRVYN 191 >gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893] gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893] Length = 211 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 58/210 (27%), Gaps = 35/210 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKI-ESTEVFFCKPADDYL 52 M+ F V+ D ET G + D + A V +D T V P + Sbjct: 1 MSRRFRGFLPVVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGAN 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106 + A+ TGI P R+ V E E I ++ +N FD + Sbjct: 61 LEQSALDFTGIDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFV 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R+ N + D + L Sbjct: 121 FAAALRSDI------RRNPFHPFSTFDTATLAGLAYGHTV-------------LAQACKL 161 Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194 GI N AH A D T L I + Sbjct: 162 AGIPFSNKDAHSAAYDAEKTADLFCGIVNR 191 >gi|191173402|ref|ZP_03034931.1| oligoribonuclease [Escherichia coli F11] gi|190906378|gb|EDV65988.1| oligoribonuclease [Escherichia coli F11] Length = 181 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|329770482|ref|ZP_08261860.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325] gi|328836231|gb|EGF85900.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325] Length = 614 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 37/229 (16%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M N F + D E QF+ ++ ++KI S + ++ KP + Sbjct: 1 MKNKPFCVVDIELT----EDKEIIQFSATKLSIDFKKISSID-YYVKPKKE--ISSFVSE 53 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 TGITP+ + E + I+++ C + + ++ D + F + Sbjct: 54 FTGITPEMLEDKPL-FKEIAYGIYEYIKD---CTLVCHGLQSDYLVIKKNFMKVGIKYI- 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178 D +++ R S++L DL+ + H+A Sbjct: 109 -----PYRTVDTVELARI-------------LFPTQKSYRLVDLSNSLNLYSGTGYHNAL 150 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227 DV T+ L+ I EK D N ++++++ + + Sbjct: 151 IDVEVTVNLLKKIAEKIQN-----IDESNYLKVKEILKRKETGYFEFFN 194 >gi|30043801|gb|AAP19520.1| hypothetical protein S4584 [Shigella flexneri 2a str. 2457T] gi|56384132|gb|AAN45737.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|110617631|gb|ABF06298.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281603627|gb|ADA76611.1| Oligoribonuclease [Shigella flexneri 2002017] Length = 204 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65 >gi|302844761|ref|XP_002953920.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f. nagariensis] gi|300260732|gb|EFJ44949.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f. nagariensis] Length = 201 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 30/194 (15%) Query: 5 FVIYDYETF-----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 F++ D E + + + +D + + +P + L DP V Sbjct: 3 FLVLDLEATCTKCRSLYPI--EIIEVSALLLDAHSLATLGEFQS-HVRPTEHPLLDPFCV 59 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI ++ + + R Q+ ++ Sbjct: 60 ELTGIEQEQVDTAPL-LGDVLLRFQQWLEGLGA----------------FGGAKSLLPVT 102 Query: 119 RWSWDNGNS---RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174 WD + R Y ++ + LQ A G+ A Sbjct: 103 WTDWDLKICLETECGWRQLPRPPYLRRWCNLKRVYGARYRRASSLQKCVEALGLRWQGRA 162 Query: 175 HDAKADVYATLALV 188 H+ D T L Sbjct: 163 HNGLDDSRNTAMLA 176 >gi|260913837|ref|ZP_05920311.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325] gi|260631924|gb|EEX50101.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325] Length = 184 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 9/127 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D +R + A + D+ + V +D+ L Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLRKMSEWCTKT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ ++ + E + F I N++ D + Sbjct: 66 HTENGL-VERVKNSKLTERAAELQTIDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPELA 124 Query: 115 YDSYRWS 121 + Sbjct: 125 DYFHYRH 131 >gi|159528144|ref|YP_001542707.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii] gi|159157989|dbj|BAF92678.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii] Length = 306 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 29/185 (15%) Query: 7 IYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 I D ET G D D + + + + + A PE ITGI Sbjct: 47 IIDLETMGMDATQDEIIEIGMLSFSFSNEDG-ILGIKHTYNELNAPGKPIPPEITKITGI 105 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + + + + + + +I +N FD + ++ Sbjct: 106 RNEDVIGKTINWNFVLQVLKE------SHLIICHNAGFDRNFLELQTPQDIQKQIITL-- 157 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 F ++ S KL L G + H A D +A Sbjct: 158 ----------------PFGCTIKDIDWKERDYESSKLDYLNWKLGY-FYDGHRAINDCWA 200 Query: 184 TLALV 188 TL L+ Sbjct: 201 TLNLL 205 >gi|146310013|ref|YP_001175087.1| oligoribonuclease [Enterobacter sp. 638] gi|166918639|sp|A4W5Q6|ORN_ENT38 RecName: Full=Oligoribonuclease gi|145316889|gb|ABP59036.1| Exonuclease, RNase T and DNA polymerase III [Enterobacter sp. 638] Length = 181 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|89110885|ref|AP_004665.1| oligoribonuclease [Escherichia coli str. K-12 substr. W3110] gi|90111697|ref|NP_418586.4| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655] gi|157155866|ref|YP_001465662.1| oligoribonuclease [Escherichia coli E24377A] gi|157163628|ref|YP_001460946.1| oligoribonuclease [Escherichia coli HS] gi|161486014|ref|NP_757097.2| oligoribonuclease [Escherichia coli CFT073] gi|161949984|ref|YP_405804.2| oligoribonuclease [Shigella dysenteriae Sd197] gi|161986383|ref|YP_313069.2| oligoribonuclease [Shigella sonnei Ss046] gi|170021825|ref|YP_001726779.1| oligoribonuclease [Escherichia coli ATCC 8739] gi|170083611|ref|YP_001732931.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B] gi|170681955|ref|YP_001746560.1| oligoribonuclease [Escherichia coli SMS-3-5] gi|187730220|ref|YP_001882856.1| oligoribonuclease [Shigella boydii CDC 3083-94] gi|188495936|ref|ZP_03003206.1| oligoribonuclease [Escherichia coli 53638] gi|191165629|ref|ZP_03027469.1| oligoribonuclease [Escherichia coli B7A] gi|193065728|ref|ZP_03046792.1| oligoribonuclease [Escherichia coli E22] gi|194428928|ref|ZP_03061461.1| oligoribonuclease [Escherichia coli B171] gi|194437211|ref|ZP_03069309.1| oligoribonuclease [Escherichia coli 101-1] gi|215489509|ref|YP_002331940.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69] gi|218556717|ref|YP_002389631.1| oligoribonuclease [Escherichia coli IAI1] gi|218561324|ref|YP_002394237.1| oligoribonuclease [Escherichia coli S88] gi|218692499|ref|YP_002400711.1| oligoribonuclease [Escherichia coli ED1a] gi|218697914|ref|YP_002405581.1| oligoribonuclease [Escherichia coli 55989] gi|218702862|ref|YP_002410491.1| oligoribonuclease [Escherichia coli IAI39] gi|218707776|ref|YP_002415295.1| oligoribonuclease [Escherichia coli UMN026] gi|229560203|ref|YP_672251.2| oligoribonuclease [Escherichia coli 536] gi|229775946|ref|YP_859834.2| oligoribonuclease [Escherichia coli APEC O1] gi|238903272|ref|YP_002929068.1| oligoribonuclease [Escherichia coli BW2952] gi|253775210|ref|YP_003038041.1| oligoribonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164094|ref|YP_003047202.1| oligoribonuclease [Escherichia coli B str. REL606] gi|256019810|ref|ZP_05433675.1| oligoribonuclease [Shigella sp. D9] gi|256025100|ref|ZP_05438965.1| oligoribonuclease [Escherichia sp. 4_1_40B] gi|260846995|ref|YP_003224773.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009] gi|260858318|ref|YP_003232209.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368] gi|260870927|ref|YP_003237329.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128] gi|293402792|ref|ZP_06646889.1| oligoribonuclease [Escherichia coli FVEC1412] gi|293407892|ref|ZP_06651732.1| oligoribonuclease [Escherichia coli B354] gi|293417668|ref|ZP_06660290.1| orn oligoribonuclease [Escherichia coli B185] gi|293476475|ref|ZP_06664883.1| orn [Escherichia coli B088] gi|297518431|ref|ZP_06936817.1| oligoribonuclease [Escherichia coli OP50] gi|298378322|ref|ZP_06988206.1| oligoribonuclease [Escherichia coli FVEC1302] gi|301027985|ref|ZP_07191269.1| exonuclease [Escherichia coli MS 196-1] gi|306815620|ref|ZP_07449769.1| oligoribonuclease [Escherichia coli NC101] gi|307140859|ref|ZP_07500215.1| oligoribonuclease [Escherichia coli H736] gi|307312001|ref|ZP_07591638.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|309787669|ref|ZP_07682280.1| exonuclease family protein [Shigella dysenteriae 1617] gi|312965838|ref|ZP_07780064.1| exonuclease family protein [Escherichia coli 2362-75] gi|312974028|ref|ZP_07788199.1| exonuclease family protein [Escherichia coli 1827-70] gi|331644912|ref|ZP_08346029.1| oligoribonuclease [Escherichia coli H736] gi|331650290|ref|ZP_08351362.1| oligoribonuclease [Escherichia coli M605] gi|331655993|ref|ZP_08356981.1| oligoribonuclease [Escherichia coli M718] gi|331660740|ref|ZP_08361672.1| oligoribonuclease [Escherichia coli TA206] gi|331671070|ref|ZP_08371903.1| oligoribonuclease [Escherichia coli TA271] gi|331671316|ref|ZP_08372114.1| oligoribonuclease [Escherichia coli TA280] gi|331680295|ref|ZP_08380954.1| oligoribonuclease [Escherichia coli H591] gi|331681184|ref|ZP_08381821.1| oligoribonuclease [Escherichia coli H299] gi|67469688|sp|P0A784|ORN_ECOLI RecName: Full=Oligoribonuclease gi|67469689|sp|P0A785|ORN_ECOL6 RecName: Full=Oligoribonuclease gi|166918637|sp|A7ZV33|ORN_ECO24 RecName: Full=Oligoribonuclease gi|166918638|sp|A8A7Q9|ORN_ECOHS RecName: Full=Oligoribonuclease gi|85676916|dbj|BAE78166.1| oligoribonuclease [Escherichia coli str. K12 substr. W3110] gi|87082382|gb|AAC77122.2| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655] gi|157069308|gb|ABV08563.1| oligoribonuclease [Escherichia coli HS] gi|157077896|gb|ABV17604.1| oligoribonuclease [Escherichia coli E24377A] gi|169756753|gb|ACA79452.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC 8739] gi|169891446|gb|ACB05153.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B] gi|170519673|gb|ACB17851.1| oligoribonuclease [Escherichia coli SMS-3-5] gi|187427212|gb|ACD06486.1| oligoribonuclease [Shigella boydii CDC 3083-94] gi|188491135|gb|EDU66238.1| oligoribonuclease [Escherichia coli 53638] gi|190904324|gb|EDV64033.1| oligoribonuclease [Escherichia coli B7A] gi|192926597|gb|EDV81227.1| oligoribonuclease [Escherichia coli E22] gi|194412981|gb|EDX29270.1| oligoribonuclease [Escherichia coli B171] gi|194423767|gb|EDX39756.1| oligoribonuclease [Escherichia coli 101-1] gi|215267581|emb|CAS12036.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69] gi|218354646|emb|CAV01632.1| oligoribonuclease [Escherichia coli 55989] gi|218363486|emb|CAR01140.1| oligoribonuclease [Escherichia coli IAI1] gi|218368093|emb|CAR05900.1| oligoribonuclease [Escherichia coli S88] gi|218372848|emb|CAR20727.1| oligoribonuclease [Escherichia coli IAI39] gi|218430063|emb|CAR10906.1| oligoribonuclease [Escherichia coli ED1a] gi|218434873|emb|CAR15811.1| oligoribonuclease [Escherichia coli UMN026] gi|222035935|emb|CAP78680.1| Oligoribonuclease [Escherichia coli LF82] gi|238861937|gb|ACR63935.1| oligoribonuclease [Escherichia coli BW2952] gi|242379688|emb|CAQ34511.1| oligoribonuclease monomer, subunit of oligoribonuclease [Escherichia coli BL21(DE3)] gi|253326254|gb|ACT30856.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975995|gb|ACT41666.1| oligoribonuclease [Escherichia coli B str. REL606] gi|253980151|gb|ACT45821.1| oligoribonuclease [Escherichia coli BL21(DE3)] gi|257756967|dbj|BAI28469.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368] gi|257762142|dbj|BAI33639.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009] gi|257767283|dbj|BAI38778.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128] gi|260451008|gb|ACX41430.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1] gi|284924347|emb|CBG37463.1| oligoribonuclease [Escherichia coli 042] gi|291320928|gb|EFE60370.1| orn [Escherichia coli B088] gi|291429707|gb|EFF02721.1| oligoribonuclease [Escherichia coli FVEC1412] gi|291430386|gb|EFF03384.1| orn oligoribonuclease [Escherichia coli B185] gi|291472143|gb|EFF14625.1| oligoribonuclease [Escherichia coli B354] gi|294490725|gb|ADE89481.1| oligoribonuclease [Escherichia coli IHE3034] gi|298280656|gb|EFI22157.1| oligoribonuclease [Escherichia coli FVEC1302] gi|299878895|gb|EFI87106.1| exonuclease [Escherichia coli MS 196-1] gi|305851282|gb|EFM51737.1| oligoribonuclease [Escherichia coli NC101] gi|306907808|gb|EFN38309.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|307556332|gb|ADN49107.1| oligoribonuclease [Escherichia coli ABU 83972] gi|307629236|gb|ADN73540.1| oligoribonuclease [Escherichia coli UM146] gi|308924419|gb|EFP69915.1| exonuclease family protein [Shigella dysenteriae 1617] gi|309704670|emb|CBJ04020.1| oligoribonuclease [Escherichia coli ETEC H10407] gi|310331562|gb|EFP98818.1| exonuclease family protein [Escherichia coli 1827-70] gi|312289081|gb|EFR16975.1| exonuclease family protein [Escherichia coli 2362-75] gi|312948814|gb|ADR29641.1| oligoribonuclease [Escherichia coli O83:H1 str. NRG 857C] gi|315063479|gb|ADT77806.1| oligoribonuclease [Escherichia coli W] gi|315138719|dbj|BAJ45878.1| oligoribonuclease [Escherichia coli DH1] gi|320173681|gb|EFW48871.1| 3'-to-5' oligoribonuclease (orn) [Shigella dysenteriae CDC 74-1112] gi|320193545|gb|EFW68182.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli WV_060327] gi|323156018|gb|EFZ42180.1| exonuclease family protein [Escherichia coli EPECa14] gi|323166646|gb|EFZ52404.1| exonuclease family protein [Shigella sonnei 53G] gi|323171596|gb|EFZ57242.1| exonuclease family protein [Escherichia coli LT-68] gi|323176077|gb|EFZ61669.1| exonuclease family protein [Escherichia coli 1180] gi|323182271|gb|EFZ67681.1| exonuclease family protein [Escherichia coli 1357] gi|323189956|gb|EFZ75234.1| exonuclease family protein [Escherichia coli RN587/1] gi|323380442|gb|ADX52710.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11] gi|323935480|gb|EGB31818.1| exonuclease [Escherichia coli E1520] gi|323940084|gb|EGB36278.1| exonuclease [Escherichia coli E482] gi|323946101|gb|EGB42137.1| exonuclease [Escherichia coli H120] gi|323950766|gb|EGB46644.1| exonuclease [Escherichia coli H252] gi|323955595|gb|EGB51358.1| exonuclease [Escherichia coli H263] gi|323960351|gb|EGB55990.1| exonuclease [Escherichia coli H489] gi|323965551|gb|EGB61005.1| exonuclease [Escherichia coli M863] gi|323970580|gb|EGB65839.1| exonuclease [Escherichia coli TA007] gi|324118730|gb|EGC12622.1| exonuclease [Escherichia coli E1167] gi|327250105|gb|EGE61824.1| exonuclease family protein [Escherichia coli STEC_7v] gi|330908507|gb|EGH37026.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli AA86] gi|331035887|gb|EGI08125.1| oligoribonuclease [Escherichia coli H736] gi|331040684|gb|EGI12842.1| oligoribonuclease [Escherichia coli M605] gi|331046347|gb|EGI18437.1| oligoribonuclease [Escherichia coli M718] gi|331051782|gb|EGI23821.1| oligoribonuclease [Escherichia coli TA206] gi|331061659|gb|EGI33585.1| oligoribonuclease [Escherichia coli TA271] gi|331071161|gb|EGI42518.1| oligoribonuclease [Escherichia coli TA280] gi|331071758|gb|EGI43094.1| oligoribonuclease [Escherichia coli H591] gi|331081405|gb|EGI52566.1| oligoribonuclease [Escherichia coli H299] gi|332346241|gb|AEE59575.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 181 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|209522085|ref|ZP_03270737.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160] gi|209497475|gb|EDZ97678.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160] Length = 251 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G + DR + A V + +++ V +D+ L D Sbjct: 67 NLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAKMDEWNQNTH 126 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111 G + + V EA+ + +I +F P + N+I D + + Sbjct: 127 GRSGLIDRVKASTVSEADATAQIREFLGQYVPPGKSPMCGNSICQDRRFMARWMPELESF 186 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW ++ A D ++ L Sbjct: 187 FHYRNLDVSTLKELCRRWQPVIYKGFQKRAMHTALADIHESIDELKYYREHFL 239 >gi|110346113|gb|ABG72350.1| oligoribonuclease [Escherichia coli 536] Length = 229 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 54 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 90 >gi|212710150|ref|ZP_03318278.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM 30120] gi|212687149|gb|EEB46677.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM 30120] Length = 180 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N+ + D E G D DR + A + D + V ++ L + + Sbjct: 6 NNLIWIDLEMTGLDPIRDRIIEIATIVTDSNLNILAEGPVIAVHQTEEQLALMDEWNVNT 65 Query: 63 ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 T ++ + + E E +F I N++ D + N Sbjct: 66 HTNSGLVERIRKSVISEREAELATIEFLEKWVPKGVSPICGNSVGQDRRFLFNYMPELES 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|300920814|ref|ZP_07137214.1| exonuclease [Escherichia coli MS 115-1] gi|537006|gb|AAA97061.1| ORF_o204a [Escherichia coli str. K-12 substr. MG1655] gi|73858127|gb|AAZ90834.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81243603|gb|ABB64313.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|115515635|gb|ABJ03710.1| oligoribonuclease [Escherichia coli APEC O1] gi|300412206|gb|EFJ95516.1| exonuclease [Escherichia coli MS 115-1] Length = 204 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65 >gi|84393062|ref|ZP_00991828.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376314|gb|EAP93196.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 210 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 21/202 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N +V D ET D A ++ F + D ++ I Sbjct: 28 NEYVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQP--FEVRLRAPQSLDCNSIKIHR 85 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q + G+ E + + F N ++GY+ R + + Sbjct: 86 IRHQDL-KHGIEEKQALIELLNFI--GNRPLVGYHIRYDKKILDRACLKQLGFPLPNRLV 142 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADV 181 + D L+ F + + + N HDA D Sbjct: 143 EVSQLYQDKLERQLPNAYF---------------DLSIDAICRQLDLPIPVNKHDALQDA 187 Query: 182 YATLALVWLIREKKPKLFEYLY 203 + + ++ F Y Sbjct: 188 ISAALIFVRLKHGDLPRFNSSY 209 >gi|227538997|ref|ZP_03969046.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227241200|gb|EEI91215.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 203 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 F+ D+E T A + VRVD+ + P ++Y+ + Sbjct: 4 QSFIAIDFELAT----AAYNSVCSVGIVRVDQ-GVITDEFYSLVKPPKNEYMWQ--TTRV 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI P+ E E +I + +N +FD D Sbjct: 57 HGIKPKDTADAPTFE-EIYPKIKDLLQNKK---MVAHNEKFDREVLSKTMKACGLD---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + D G KL GI+ N H+A +D Sbjct: 109 -YRELHLPVMWECTSKIYR------------DKGFKKTKLNLCCEIMGIDL-NHHEALSD 154 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 A L E +L + ++ Sbjct: 155 AKAAAFLYLKQNEVTQELLDRVF 177 >gi|209921653|ref|YP_002295737.1| oligoribonuclease [Escherichia coli SE11] gi|209914912|dbj|BAG79986.1| oligoribonuclease [Escherichia coli SE11] gi|320200705|gb|EFW75291.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli EC4100B] Length = 181 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|166711531|ref|ZP_02242738.1| ribonuclease T [Xanthomonas oryzae pv. oryzicola BLS256] Length = 211 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 58/207 (28%), Gaps = 31/207 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52 M+ F V+ D ET G D + A V + D T PA Sbjct: 16 MSRRFRGYLPVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLE 75 Query: 53 PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 +P+++ ITGI A ++ + I+ +N FD + Sbjct: 76 IEPKSLEITGIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFL 135 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + S +D + + Y G T A Sbjct: 136 NAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAAQAAG 178 Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193 +AH A D T L I Sbjct: 179 LDWNAADAHSAVYDTEQTARLFCKIAN 205 >gi|313808696|gb|EFS47150.1| exonuclease [Propionibacterium acnes HL087PA2] Length = 210 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 36/200 (18%) Query: 3 NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 FV D+ET G Q A V+V + ++ P E Sbjct: 41 PSFVAVDFETANRMGGVSA-----CQVAMVKV-LDGQIVDRLNTLIRPPKGWD--SFEFT 92 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ++ GI+ + + F + + +N FD R D + Sbjct: 93 YLHGISAADVADAPG-WINIADTVSHFV---DGATVYAHNAAFDSRVWRQ------LDEH 142 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177 + + + G ++KL + A + N H A Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189 Query: 178 KADVYATLALVWLIREKKPK 197 +D A +V ++ + Sbjct: 190 DSDAKACALIVCELQRRAQT 209 >gi|302545204|ref|ZP_07297546.1| oligoribonuclease [Streptomyces hygroscopicus ATCC 53653] gi|302462822|gb|EFL25915.1| oligoribonuclease [Streptomyces himastatinicus ATCC 53653] Length = 202 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 57/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P + L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGDGVDIVVRPPAESLTTMPEVVR 60 Query: 60 ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + G+ EA+ I + + N++ D + Sbjct: 61 ------EMHTASGLLAELDGGTTLADAEAQVLAYIREHVPDAGKAPLCGNSVSTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ V + P A N Sbjct: 113 -----LLRDMPTLEAYLHYRIVDVSSVKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 + H A AD++ ++A + RE Sbjct: 149 SPKKNGNHRALADIHESIAELRYYRE 174 >gi|289425017|ref|ZP_06426796.1| exonuclease [Propionibacterium acnes SK187] gi|289427636|ref|ZP_06429348.1| exonuclease [Propionibacterium acnes J165] gi|295131251|ref|YP_003581914.1| exonuclease [Propionibacterium acnes SK137] gi|289154716|gb|EFD03402.1| exonuclease [Propionibacterium acnes SK187] gi|289159127|gb|EFD07319.1| exonuclease [Propionibacterium acnes J165] gi|291376299|gb|ADE00154.1| exonuclease [Propionibacterium acnes SK137] gi|313763263|gb|EFS34627.1| exonuclease [Propionibacterium acnes HL013PA1] gi|313773241|gb|EFS39207.1| exonuclease [Propionibacterium acnes HL074PA1] gi|313793400|gb|EFS41458.1| exonuclease [Propionibacterium acnes HL110PA1] gi|313801125|gb|EFS42391.1| exonuclease [Propionibacterium acnes HL110PA2] gi|313810334|gb|EFS48050.1| exonuclease [Propionibacterium acnes HL083PA1] gi|313812157|gb|EFS49871.1| exonuclease [Propionibacterium acnes HL025PA1] gi|313814708|gb|EFS52422.1| exonuclease [Propionibacterium acnes HL059PA1] gi|313817876|gb|EFS55590.1| exonuclease [Propionibacterium acnes HL046PA2] gi|313819789|gb|EFS57503.1| exonuclease [Propionibacterium acnes HL036PA1] gi|313823447|gb|EFS61161.1| exonuclease [Propionibacterium acnes HL036PA2] gi|313824920|gb|EFS62634.1| exonuclease [Propionibacterium acnes HL063PA1] gi|313828254|gb|EFS65968.1| exonuclease [Propionibacterium acnes HL063PA2] gi|313830174|gb|EFS67888.1| exonuclease [Propionibacterium acnes HL007PA1] gi|313833097|gb|EFS70811.1| exonuclease [Propionibacterium acnes HL056PA1] gi|313838091|gb|EFS75805.1| exonuclease [Propionibacterium acnes HL086PA1] gi|314914476|gb|EFS78307.1| exonuclease [Propionibacterium acnes HL005PA4] gi|314917800|gb|EFS81631.1| exonuclease [Propionibacterium acnes HL050PA1] gi|314919473|gb|EFS83304.1| exonuclease [Propionibacterium acnes HL050PA3] gi|314925898|gb|EFS89729.1| exonuclease [Propionibacterium acnes HL036PA3] gi|314930232|gb|EFS94063.1| exonuclease [Propionibacterium acnes HL067PA1] gi|314957046|gb|EFT01152.1| exonuclease [Propionibacterium acnes HL027PA1] gi|314957661|gb|EFT01764.1| exonuclease [Propionibacterium acnes HL002PA1] gi|314960727|gb|EFT04828.1| exonuclease [Propionibacterium acnes HL002PA2] gi|314963399|gb|EFT07499.1| exonuclease [Propionibacterium acnes HL082PA1] gi|314968946|gb|EFT13044.1| exonuclease [Propionibacterium acnes HL037PA1] gi|314972968|gb|EFT17064.1| exonuclease [Propionibacterium acnes HL053PA1] gi|314975485|gb|EFT19580.1| exonuclease [Propionibacterium acnes HL045PA1] gi|314979437|gb|EFT23531.1| exonuclease [Propionibacterium acnes HL072PA2] gi|314984227|gb|EFT28319.1| exonuclease [Propionibacterium acnes HL005PA1] gi|314986027|gb|EFT30119.1| exonuclease [Propionibacterium acnes HL005PA2] gi|314988810|gb|EFT32901.1| exonuclease [Propionibacterium acnes HL005PA3] gi|315077249|gb|EFT49311.1| exonuclease [Propionibacterium acnes HL053PA2] gi|315079928|gb|EFT51904.1| exonuclease [Propionibacterium acnes HL078PA1] gi|315083258|gb|EFT55234.1| exonuclease [Propionibacterium acnes HL027PA2] gi|315086971|gb|EFT58947.1| exonuclease [Propionibacterium acnes HL002PA3] gi|315089896|gb|EFT61872.1| exonuclease [Propionibacterium acnes HL072PA1] gi|315096775|gb|EFT68751.1| exonuclease [Propionibacterium acnes HL038PA1] gi|315097845|gb|EFT69821.1| exonuclease [Propionibacterium acnes HL059PA2] gi|315100750|gb|EFT72726.1| exonuclease [Propionibacterium acnes HL046PA1] gi|315109298|gb|EFT81274.1| exonuclease [Propionibacterium acnes HL030PA2] gi|327325340|gb|EGE67145.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL096PA2] gi|327325497|gb|EGE67300.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL096PA3] gi|327443771|gb|EGE90425.1| exonuclease [Propionibacterium acnes HL043PA1] gi|327449167|gb|EGE95821.1| exonuclease [Propionibacterium acnes HL043PA2] gi|327449503|gb|EGE96157.1| exonuclease [Propionibacterium acnes HL013PA2] gi|327451349|gb|EGE98003.1| exonuclease [Propionibacterium acnes HL087PA3] gi|327451673|gb|EGE98327.1| exonuclease [Propionibacterium acnes HL092PA1] gi|327452136|gb|EGE98790.1| exonuclease [Propionibacterium acnes HL083PA2] gi|328752391|gb|EGF66007.1| exonuclease [Propionibacterium acnes HL087PA1] gi|328755047|gb|EGF68663.1| exonuclease [Propionibacterium acnes HL025PA2] gi|328755908|gb|EGF69524.1| exonuclease [Propionibacterium acnes HL020PA1] gi|328761056|gb|EGF74607.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL099PA1] gi|332676124|gb|AEE72940.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes 266] Length = 210 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 36/200 (18%) Query: 3 NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 FV D+ET G Q A V+V + ++ P E Sbjct: 41 PSFVAVDFETANRMGGVSA-----CQVAMVKV-LDGQIVDRLNTLIRPPKGWD--SFEFT 92 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ++ GI+ + + F + + +N FD R D + Sbjct: 93 YLHGISAADVADAPG-WINIADTVSHFV---DGATVYAHNAAFDSRVWRQ------LDEH 142 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177 + + + G ++KL + A + N H A Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189 Query: 178 KADVYATLALVWLIREKKPK 197 +D A +V ++ + Sbjct: 190 DSDAEACALIVCELQRRAQT 209 >gi|311695397|gb|ADP98270.1| oligoribonuclease [marine bacterium HP15] Length = 180 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 19/132 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 +N V D E G D +R + A + D + + + F + Sbjct: 4 SNRLVWIDLEMTGLDPEKERIIEMATIITDSELNIVAEGPVIAVHQPQSFLDSMDEWC-- 61 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 G + ++ + E++ ++ +F + N+I D + Sbjct: 62 ----TRTHGESGLTKRVQESDISESQAEQQTIEFLKKHVEKGQSPLCGNSIGQDRRFLVK 117 Query: 109 IFYRNFYDSYRW 120 + Sbjct: 118 YMPELEGFFHYR 129 >gi|261345223|ref|ZP_05972867.1| oligoribonuclease [Providencia rustigianii DSM 4541] gi|282566919|gb|EFB72454.1| oligoribonuclease [Providencia rustigianii DSM 4541] Length = 180 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPVRDRIIEIATIVTDSNLNILAE 42 >gi|213965916|ref|ZP_03394107.1| oligoribonuclease [Corynebacterium amycolatum SK46] gi|213951494|gb|EEB62885.1| oligoribonuclease [Corynebacterium amycolatum SK46] Length = 217 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 8/127 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G + + A + D + ++ L D + Sbjct: 15 DRIVWIDCEMTGLEPERHVIVEIAALVTDANLNVLGEGVDIVVHASETELAQMDDFVTKM 74 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNF 114 + Q+ A+ + + + T + N+I D + Sbjct: 75 HAKSGLDQEIRASKTNVADAEQAVLDYIRQWVPEPRTAPLAGNSIASDRKFIHRYMPELD 134 Query: 115 YDSYRWS 121 + Sbjct: 135 QHLHYRM 141 >gi|171742833|ref|ZP_02918640.1| hypothetical protein BIFDEN_01948 [Bifidobacterium dentium ATCC 27678] gi|283456129|ref|YP_003360693.1| hypothetical protein BDP_1248 [Bifidobacterium dentium Bd1] gi|171278447|gb|EDT46108.1| hypothetical protein BIFDEN_01948 [Bifidobacterium dentium ATCC 27678] gi|283102763|gb|ADB09869.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1] Length = 443 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 9/202 (4%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAVFITGIT 64 D ET G V D D + + K + +TGIT Sbjct: 234 IDLETTGTSVNQDYIIDAGWELFDMAMGRAFEAQRRTYGISKQRERLGISRNITELTGIT 293 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY--SRNIFYRNFYDSYRWSW 122 + E + + + I+ +N F+ + Y R Sbjct: 294 TADVSGR-IPFQEDANAQKTIITALDGRIMVAHNANFERSFLIGNCEGYAEALRDGRIRI 352 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL---ALANGIEHVNAHDAKA 179 + + R D + D ++ A+ H Sbjct: 353 VDSMKVAQHSEDARVQGFKLDDYARRNHALDADRDMEVPSHDGGAIRLDQGEKERHLGLE 412 Query: 180 DVYATLALVWLIREKKPKLFEY 201 D + + + +E+ Sbjct: 413 DAHIMMRAMRNQLNALHSRYEH 434 >gi|149195011|ref|ZP_01872104.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus TB-2] gi|149134932|gb|EDM23415.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus TB-2] Length = 274 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 23/185 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 ++D ET +A V D + + EA + I + Sbjct: 106 VFDTETTDI---YGYIISYAFVIQDMDSLETKEIYEL---LNPKAKISEEAYEVHKIKQE 159 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 E E I F+ + +I +N+ FD + R + + Sbjct: 160 DLEDKPTFE-EKKEYILDLFNSVD--MIVGHNVFFDFGVLKRELERAKHFPNIIEVPIFD 216 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + D++ P + +A G + H+A DV TL Sbjct: 217 TMFYSWDIVVLDKKKQPRL--------------EEAVAFFLGPQKAQYHNALEDVKMTLK 262 Query: 187 LVWLI 191 + + Sbjct: 263 VFNRL 267 >gi|120597485|ref|YP_962059.1| oligoribonuclease [Shewanella sp. W3-18-1] gi|146294374|ref|YP_001184798.1| oligoribonuclease [Shewanella putrefaciens CN-32] gi|166216588|sp|A4YAL6|ORN_SHEPC RecName: Full=Oligoribonuclease gi|166216590|sp|A1RFR0|ORN_SHESW RecName: Full=Oligoribonuclease gi|120557578|gb|ABM23505.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|145566064|gb|ABP76999.1| Exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] gi|319427729|gb|ADV55803.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens 200] Length = 181 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V D+ L D Sbjct: 6 NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + EA+ + F + N++ D + Sbjct: 66 HGESGLIDRVRASQDNEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|146329636|ref|YP_001209796.1| oligoribonuclease [Dichelobacter nodosus VCS1703A] gi|166216257|sp|A5EY84|ORN_DICNV RecName: Full=Oligoribonuclease gi|146233106|gb|ABQ14084.1| oligoribonuclease [Dichelobacter nodosus VCS1703A] Length = 180 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59 N+ V D E G D D + A + D Q + V + L +A Sbjct: 4 KNNLVWIDLEMTGLDPQHDEIIEIATIVTDAQLNILAEGPVIAVYQPEPILAQMDAWNQK 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + ++ + E + F I N+I D + + R Sbjct: 64 HHGASGLIERVRQSSFNTLEAEAQTLSFLEQYSEKGRSPICGNSICQDRRFLSRLMPRLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 AFFHYR 129 >gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638] gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638] Length = 223 Score = 57.5 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 52/224 (23%), Gaps = 44/224 (19%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + + + A V + EA+ I IT Sbjct: 4 VIDTETTGLEGGPETVVELASVDI-VDGVICNPMSDL---VKPGVAIGFEAMAIHHITED 59 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + +E R +N +FD Sbjct: 60 MVEGAPL-LSEVIGR------YLGADAYVAHNAKFD------------------KSKLPQ 94 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-----NAHDAKADV 181 + + + P+ S Q L + G++ AH A D Sbjct: 95 IDAPWICTAKLARSLLPEH----------KSHSNQYLRYSLGLKPEVPEGLYAHRALYDC 144 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 Y T L+ + + N L + + Sbjct: 145 YVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRFGKHKGVSF 188 >gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891] gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891] Length = 218 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 65/216 (30%), Gaps = 29/216 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D + ST F +P + + EA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V EAE + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHSFVMEASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + ++ AH Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACK-----------------TAGMDFDNKEAH 182 Query: 176 DAKADVYATLALVWLIRE--KKPKLFEYLYDYRNKN 209 A D T L I K + + +K Sbjct: 183 SALYDTQKTAELFCGIVNKWKALGGWPVVEPDTDKK 218 >gi|91213714|ref|YP_543700.1| oligoribonuclease [Escherichia coli UTI89] gi|237703830|ref|ZP_04534311.1| oligoribonuclease [Escherichia sp. 3_2_53FAA] gi|254037177|ref|ZP_04871254.1| oligoribonuclease [Escherichia sp. 1_1_43] gi|332280947|ref|ZP_08393360.1| oligoribonuclease [Shigella sp. D9] gi|26111489|gb|AAN83671.1|AE016771_182 Oligoribonuclease [Escherichia coli CFT073] gi|91075288|gb|ABE10169.1| oligoribonuclease [Escherichia coli UTI89] gi|226840283|gb|EEH72285.1| oligoribonuclease [Escherichia sp. 1_1_43] gi|226901742|gb|EEH88001.1| oligoribonuclease [Escherichia sp. 3_2_53FAA] gi|332103299|gb|EGJ06645.1| oligoribonuclease [Shigella sp. D9] Length = 220 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 45 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 81 >gi|311281283|ref|YP_003943514.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] gi|308750478|gb|ADO50230.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] Length = 181 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|260772767|ref|ZP_05881683.1| hypothetical protein VIB_001223 [Vibrio metschnikovii CIP 69.14] gi|260611906|gb|EEX37109.1| hypothetical protein VIB_001223 [Vibrio metschnikovii CIP 69.14] Length = 176 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 23/152 (15%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPA 48 M + V+ +D E T G + +D + ++ + ++ +P Sbjct: 1 MNYNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLTAGKIVKRAQ-YYVQPE 53 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 D + V +TGITP+K + G A+ R + + F + DD Sbjct: 54 QDKI-SEFCVELTGITPRKVAKQGRPLADVLRSMVKNFGGSKKIYACW---GRDDLILAK 109 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 + N + + L ++ Sbjct: 110 ECAQKGLPMPIHECINLATLYRLQHRLKDKRI 141 >gi|218551434|ref|YP_002385226.1| oligoribonuclease [Escherichia fergusonii ATCC 35469] gi|218358976|emb|CAQ91636.1| oligoribonuclease [Escherichia fergusonii ATCC 35469] gi|324112239|gb|EGC06217.1| exonuclease [Escherichia fergusonii B253] Length = 181 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|197334850|ref|YP_002157125.1| oligoribonuclease [Vibrio fischeri MJ11] gi|197316340|gb|ACH65787.1| oligoribonuclease [Vibrio fischeri MJ11] Length = 181 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 30/125 (24%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61 + + D E G D + + A + D Q + + +P ++ + T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQPEEELAKMDDWCTNT 65 Query: 62 GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + E F I N+I D + Sbjct: 66 HTNSGLVARVQESKYNEEAAIAETIAFLEQWVPKGVSPICGNSIGQDRRFLYKHMPTLEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 205 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 16/213 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + + +D ET G + Q + ++ D + +K+E FF +D P EA I Sbjct: 2 NMIFFDTETTGLKP--GQICQLSYIKVTTDTKPQKVEGKNFFFS--VEDIEPSAEA--IH 55 Query: 62 GITPQKALR--DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 G + + + DG ++ F + +IGYN FD + FYR + Sbjct: 56 GFSVEDLIELSDGCEFSDLYEEFINDFVDCD-LVIGYNV-NFDIKFLVAEFYRLGINYIP 113 Query: 120 WSWDNGNSRWDLLDVMRAIY--AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + + +R +P + + +F + G HDA Sbjct: 114 KMDFCAMQYYKEICAIRGKNGDIKNPKLAEVVEFLNIDETFMYEKTRELFGGS-GRFHDA 172 Query: 178 KADVYAT-LALVWLIREKKPKLFEYLYDYRNKN 209 + D AT L + I++K + + ++K Sbjct: 173 RFDTTATYLIITEGIKKKFIPPYYFTKYIKDKK 205 >gi|242237928|ref|YP_002986109.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] gi|242129985|gb|ACS84287.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] Length = 180 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE 41 >gi|145593678|ref|YP_001157975.1| oligoribonuclease [Salinispora tropica CNB-440] gi|145303015|gb|ABP53597.1| Exonuclease, RNase T and DNA polymerase III [Salinispora tropica CNB-440] Length = 198 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 14/153 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEAVFIT 61 V D E G D+ D+ + A + D + + D +P+ A Sbjct: 7 LVWIDCEMTGLDLGGDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVATM-H 65 Query: 62 ---GITPQKALRD--GVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T ++ R G+ EAE I P T + N+I D + R Sbjct: 66 AKSGLT-EEVRRSTIGLAEAEEMVLDYITSHVKDPRTAPLCGNSIATDRGFIARDMPR-- 122 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 D++ S L + + Sbjct: 123 LDNHLHYRMIDVSSIKELCRRWYPRVYFSQPRK 155 >gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48] gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48] Length = 224 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 31/215 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYL 52 M F V+ D ET G + A D + A V + D + F+ +P + Sbjct: 22 MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGAN 81 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 + A+ TGI A+ + + R + + I+ +N FD + Sbjct: 82 IEAAALEFTGIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN + + L + + DG Sbjct: 142 NAAVARNDIKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201 AH A+ D T L I + ++ + Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219 >gi|301023446|ref|ZP_07187227.1| exonuclease [Escherichia coli MS 69-1] gi|300396998|gb|EFJ80536.1| exonuclease [Escherichia coli MS 69-1] Length = 199 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60 >gi|256375198|ref|YP_003098858.1| oligoribonuclease [Actinosynnema mirum DSM 43827] gi|255919501|gb|ACU35012.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 208 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 12/150 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + V D E G D+ D + A + D + + D+ L V Sbjct: 1 MDRLVWIDCEMTGLDLGSDALIEIAALVTDAELNVLGEGVDVVIHADDEALAAMPEVVVK 60 Query: 60 IT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 + G+T ++ R AE I ++ T + N+I D + Sbjct: 61 MHAKSGLT-EEVRRSTTTLAEAEALVLAYIREWVPDARTAPLAGNSIATDRGFI--ARDM 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D++ S L + Sbjct: 118 PELDAHLHYRMVDVSSIKELCRRWYPRIYF 147 >gi|261342826|ref|ZP_05970684.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316] gi|288314868|gb|EFC53806.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316] Length = 181 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|288906155|ref|YP_003431377.1| DNA polymerase III epsilon subunit [Streptococcus gallolyticus UCN34] gi|288732881|emb|CBI14460.1| putative DNA polymerase III epsilon subunit [Streptococcus gallolyticus UCN34] Length = 195 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F Q + V+ ++ +++S + + D +TGIT Sbjct: 7 YIAFDLE-FNTVAEKSHIIQVSAVKF-KEGHEVDSFDTY---VYTDVPLQSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K E F T ++GYN ++ D Sbjct: 62 SEKIANAPK-LDEVLVDFKTFVGE--TALVGYNALKSDLPLLAENELD------------ 106 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + + + + + +G + KL +A GI + H++ D T Sbjct: 107 -------LTELYKVDLYDEAFERRSTDLNGIANLKLTSVAEFLGIS-GHGHNSLEDARMT 158 Query: 185 LALVWLIREKKPK 197 + E Sbjct: 159 ALVYEKFMEFDEN 171 >gi|251788035|ref|YP_003002756.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591] gi|247536656|gb|ACT05277.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591] Length = 180 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 41 >gi|187927908|ref|YP_001898395.1| oligoribonuclease [Ralstonia pickettii 12J] gi|187724798|gb|ACD25963.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12J] Length = 219 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ V D E G DR + A V D + + Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNILAE 64 >gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99] gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99] Length = 221 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 49/182 (26%), Gaps = 38/182 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V V + D +A+ + IT Sbjct: 4 VIDTETCGL---QGGIVEVASVDV-INGQIANPMSDLIS---PDRPISRQAMDVHKITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + R H + + +N R W Sbjct: 57 MVRGKPTIE-QAIGRYH-----GSPYYVAHNASFD----------RRMLPEMNGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R + WP G + + + ++AH A D Y T A Sbjct: 97 --ICTMTLARRL---------WPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAA 145 Query: 187 LV 188 L+ Sbjct: 146 LL 147 >gi|170696330|ref|ZP_02887460.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis C4D1M] gi|170138736|gb|EDT06934.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis C4D1M] Length = 203 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G D DR + A V + +++ V +D+ L D Sbjct: 19 NLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMAEGPVLAIHQSDETLAKMDQWNQNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111 G + + V E E + +I F + P + N+I D + + Sbjct: 79 GRSGLIDRVKASTVSEIEATEQIRAFLAQYVPPGKSPMCGNSICQDRRFMARWMPELETF 138 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW + A D ++ L Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191 >gi|325499700|gb|EGC97559.1| hypothetical protein ECD227_3797 [Escherichia fergusonii ECD227] Length = 185 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 46 >gi|320539682|ref|ZP_08039346.1| putative oligoribonuclease [Serratia symbiotica str. Tucson] gi|320030294|gb|EFW12309.1| putative oligoribonuclease [Serratia symbiotica str. Tucson] Length = 181 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 13/36 (36%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D DR + A + D + Sbjct: 7 NLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|238892647|ref|YP_002917381.1| oligoribonuclease [Klebsiella pneumoniae NTUH-K2044] gi|238544963|dbj|BAH61314.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 199 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60 >gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1] gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1] Length = 210 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61 V+ D ET G D + + A V + E+ F P + + + +++ Sbjct: 20 VVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLH-FHVAPFEGAILEQKSLSFN 78 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 GI LR + E + + I + ++ +N FD + R Sbjct: 79 GINLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGL 138 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--N 173 + N + D + L L GI+ Sbjct: 139 IKH-----NPFHSFVTFDTAALSALVLGQTV-------------LAKACLEAGIDFESSQ 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L + + Sbjct: 181 AHSALYDTKQTAKLFCELVNR 201 >gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] Length = 219 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D E ST F +P + + EA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEGANLEKEALDFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E+E + I++ + + I+ +N FD + R+ Sbjct: 80 IHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHNFVMAASERSKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + ++ AH Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------TAGMDFDNKEAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 183 SALYDTLKTAELFCGIVNK 201 >gi|25028926|ref|NP_738980.1| oligoribonuclease [Corynebacterium efficiens YS-314] gi|259507990|ref|ZP_05750890.1| oligoribonuclease [Corynebacterium efficiens YS-314] gi|29611789|sp|Q8FMX9|ORN_COREF RecName: Full=Oligoribonuclease gi|23494213|dbj|BAC19180.1| putative oligoribonuclease [Corynebacterium efficiens YS-314] gi|259164485|gb|EEW49039.1| oligoribonuclease [Corynebacterium efficiens YS-314] Length = 221 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 10/119 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D+ + A + D + D+ L D + Sbjct: 19 DRLVWVDLEMTGLDLERHVIVEVAALVTDANLNILGEGVDLVVHATDEELARMDDFVTRM 78 Query: 61 T---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G+TP V E I + + + N+I D + R R Sbjct: 79 HDSSGLTP-LIRASTVSLKDAEDAVLALIEEHCDPAHPAPLAGNSIATDRAFIREQMPR 136 >gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS) gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 221 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 26/219 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D E T F +P + + +A+ Sbjct: 20 VVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEPFKGSIINSDAIAFNK 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTC------IIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR + E + I + I+ +N FD + R Sbjct: 80 IDPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNFLMAAIQRVKIK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L ++ S A+ ++ AH Sbjct: 140 NNPFHPFATFDTAALSGLVVGQTVLSKACK-----------------AIGLSFDNHQAHS 182 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215 A D T L + + +L + D + N Sbjct: 183 ALYDTLQTANLFCELVNRWKRLGGWPVDIKKNNSTSNKY 221 >gi|161984789|ref|YP_410541.2| oligoribonuclease [Shigella boydii Sb227] gi|320183731|gb|EFW58568.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83] gi|320187043|gb|EFW61754.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83] gi|332087020|gb|EGI92154.1| exonuclease family protein [Shigella boydii 3594-74] Length = 181 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42 >gi|81248005|gb|ABB68713.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 204 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65 >gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B] gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 306 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + P V V + E +E + P + I GI Sbjct: 2 NFIAIDFET--ANEKRNSPCSIGIVVV-KNGEVVERIHHLIK--PKEMRFMPINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + E +I F+ ++ +N FD R + + + Sbjct: 57 RPAMVENEPEFH-EVWAKIKHHFNES---LVIAHNASFDISVLRKSAELYDIELPSFKY- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + MR F KL + G E HDA D A Sbjct: 112 --------ICTMRLAKNFYRGIEN----------AKLNTVNDFLGYEF-KHHDALYDALA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|238750063|ref|ZP_04611566.1| Oligoribonuclease [Yersinia rohdei ATCC 43380] gi|238711607|gb|EEQ03822.1| Oligoribonuclease [Yersinia rohdei ATCC 43380] Length = 181 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 14/38 (36%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 5 QNNLIWIDLEMTGLDPQRDRIIEIATLVTDANLNILAE 42 >gi|60594178|pdb|1Y97|A Chain A, The Human Trex2 3' Exonuclease Structure Suggests A Mechanism For Efficient Non-Processive Dna Catalysis gi|60594179|pdb|1Y97|B Chain B, The Human Trex2 3' Exonuclease Structure Suggests A Mechanism For Efficient Non-Processive Dna Catalysis Length = 238 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCXC-- 67 Query: 48 ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + + G + R + F S C++ +N +D Sbjct: 68 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 125 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + G + G + L Sbjct: 126 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 176 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 177 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 205 >gi|260599488|ref|YP_003212059.1| oligoribonuclease [Cronobacter turicensis z3032] gi|260218665|emb|CBA34001.1| Oligoribonuclease [Cronobacter turicensis z3032] Length = 181 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPRQDRIIEIATLVTDANLNILAE 42 >gi|271502182|ref|YP_003335208.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech586] gi|270345737|gb|ACZ78502.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech586] Length = 180 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE 41 >gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp] gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp] Length = 224 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D + T F +P + + A+ TG Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEAAALEFTG 91 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + E + + + I+ +N FD + R Sbjct: 92 IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GIE A Sbjct: 152 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIEFDGKEA 192 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 193 HSARYDTEKTAELFCGIVNRWKEMGGW 219 >gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 166 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 28/193 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V + + +P + Sbjct: 1 MQNFTAIDFET--ANEQRTSACAIGVVVV-ENRQIV-RQYARLIRPEPMRFAS-FNTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T V E I + ++ +N FD ++ + + Sbjct: 56 GLTAADVAGAPV-FGELWPEIAADI--VSAPLLVAHNTSFDMSVLQHCLRSSGIAANIP- 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D + R P + KL L GI N HDA +D Sbjct: 112 --------DAVCSCRMAKKLLPQLVN----------HKLNTLCKHFGIPL-NHHDALSDA 152 Query: 182 YATLALVWLIREK 194 A ++ + ++ Sbjct: 153 QAAARIILELYQE 165 >gi|303317210|ref|XP_003068607.1| exonuclease family protein [Coccidioides posadasii C735 delta SOWgp] gi|240108288|gb|EER26462.1| exonuclease family protein [Coccidioides posadasii C735 delta SOWgp] gi|320038531|gb|EFW20466.1| RNA exonuclease Rex2 [Coccidioides posadasii str. Silveira] Length = 190 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 11/126 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEA---VFI 60 V D E G D D Q + D + E F Y+ + V Sbjct: 10 LVWIDCEMTGLDPETDHILQISCFLTDADLNLL-EPEGFHVTVHQPQYILSSMSSWCVST 68 Query: 61 TGIT--PQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + L +E + I ++ T ++ N++ D + Y+ Sbjct: 69 HGHSGLTAAVLDSTTTPSEAASALLAYIQKYIPESRTALLAGNSVHADRAFLARKPYKTV 128 Query: 115 YDSYRW 120 D + Sbjct: 129 VDWLHY 134 >gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70] gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70] Length = 220 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 26/201 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + +++ + + T F +P +PE++ G Sbjct: 24 VIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPESLQFNG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + + II +N FD + R Sbjct: 84 IDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFLMAAAERTGVK 143 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L M A + AH Sbjct: 144 RNPFHPFGMFDTATLSGFMFGQTVLVKACQ-----------------AAQIAFDGKQAHS 186 Query: 177 AKADVYATLALVWLIREKKPK 197 A D T L + Sbjct: 187 ALYDTERTAELFCYMVNHLKH 207 >gi|331006083|ref|ZP_08329419.1| Ribonuclease T [gamma proteobacterium IMCC1989] gi|330420120|gb|EGG94450.1| Ribonuclease T [gamma proteobacterium IMCC1989] Length = 201 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 31/218 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52 M F V+ D ET G + D + + + +D + I+ + P + Sbjct: 1 MAERFRGYLPVVIDVETGGFNSRTDALLEVSAATLAMDDEGILSIDQLYEYHVTPFEGAN 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS 106 + A+ TGI + R+ + E + + + + I+ +N FD + Sbjct: 61 IEQSALDFTGIDLENPDRNAIPEEDMLNELFRVIRKAVKRNDCTRAIMVAHNAHFDLGFV 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + + L + + Sbjct: 121 NEAAERCGMKRNPFHPFSCMDTATLSGLAFGHTVLAQACQL-----------------AK 163 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYD 204 G + AH A D T L +I + +L + Sbjct: 164 IGFSNKEAHAASYDTRKTAELFCVIVNRWQELGGWPLR 201 >gi|302560513|ref|ZP_07312855.1| oligoribonuclease [Streptomyces griseoflavus Tu4000] gi|302478131|gb|EFL41224.1| oligoribonuclease [Streptomyces griseoflavus Tu4000] Length = 200 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDP-- 55 M + V D E G ++ D + A + D + + +P D + +P Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRALETMPQVVR 60 Query: 56 ----EAVFIT----GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + +T G T ++A E I + P + N++ D + Sbjct: 61 EMHTASGLLTELEGGTTLEEA------EQRVLDYIREHVKEPGKAPLCGNSVGTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ + + P A N Sbjct: 113 -----LLRDMPTLEDYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 E H A AD+ ++ + RE Sbjct: 149 SPEKNGNHRALADIRESITELRYYRE 174 >gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus brevis ATCC 367] gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus brevis ATCC 367] Length = 178 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 30/201 (14%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +FV D+ET G+ + + + R + ++ D V I G Sbjct: 2 NFVAMDFETASGKRYSACSL----ALTIVRNDQVVDEFYSL---IKPDTDFFWRNVQIHG 54 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + E + + FF ++ +N FD+ R+ Sbjct: 55 IHERDVANAP-TFPEVWQHVAPFFQRD--RLVIAHNAPFDNGVLRSSLEHYNLPP----- 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 +R+ LD ++ F P+ + KL + I+ + H+A D Sbjct: 107 ----ARYLTLDTVKTSRKFFPE----------FPNHKLDTVCDELDIDLHHHHNALDDSL 152 Query: 183 ATLALVWLIREKKPKLFEYLY 203 A ++ + + Sbjct: 153 ACANILLYEAQHFGTQPLKSF 173 >gi|50760099|ref|XP_417900.1| PREDICTED: similar to CGI-114 protein [Gallus gallus] Length = 233 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 7/122 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63 V D E G DV D+ + A + D + K D+ L G Sbjct: 40 VWVDLEMTGLDVEKDQILEMACLITDSDLNVLAEGPNLIIKQPDELLDSMSEWCKEHHGK 99 Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + + + + F P C + N++ D + + + Sbjct: 100 SGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMRHLH 159 Query: 119 RW 120 Sbjct: 160 YR 161 >gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 449 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 9/100 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGI 63 FV D ET + + +V +E + C P E + I GI Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGL--VEEQATWRCTPPPGMEDFLDENIAIHGI 160 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103 P+ + A+ + +F + +N +FD Sbjct: 161 RPEDIEGEP-SFAQRYELVKEFT---GELPMVSHNAQFDF 196 >gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] Length = 449 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 9/100 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGI 63 FV D ET + + +V +E + C P E + I GI Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGL--VEEQATWRCTPPPGMEDFLDENIAIHGI 160 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103 P+ + A+ + +F + +N +FD Sbjct: 161 RPEDIEGEP-SFAQRYELVKEFT---GELPMVSHNAQFDF 196 >gi|83647725|ref|YP_436160.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83635768|gb|ABC31735.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 230 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 24/213 (11%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G ++ D V ++ + F D + + + I G++ Q Sbjct: 40 DVETTGLNIKKDVVIAIGAVEIN-DLSICLE-QSFELLIDADTHLESDNILIHGLSQQTL 97 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + + IH F S + + + FD + +SR Sbjct: 98 SQGAHPK----EAIHSFLSYAHGAALLAFHAPFDKAMLEKE---------ARTHLGVSSR 144 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 DV + A P+ L D + G+ + H A D A L Sbjct: 145 LPFYDVAEWLKALCPEAPSH--------LRSLDDWSHYFGLYNDQRHHAACDAMAAAELA 196 Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + +K L + ++++ + ++ M Sbjct: 197 LICLQKARSLGVTTWK-GLQDKIAARMKLEKMR 228 >gi|113968935|ref|YP_732728.1| oligoribonuclease [Shewanella sp. MR-4] gi|114048927|ref|YP_739477.1| oligoribonuclease [Shewanella sp. MR-7] gi|123130769|sp|Q0HMP6|ORN_SHESM RecName: Full=Oligoribonuclease gi|123131054|sp|Q0HR35|ORN_SHESR RecName: Full=Oligoribonuclease gi|113883619|gb|ABI37671.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] gi|113890369|gb|ABI44420.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] Length = 181 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V +D+ L D Sbjct: 6 NNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + V EA+ + F + N++ D + Sbjct: 66 HGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|294626315|ref|ZP_06704917.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665592|ref|ZP_06730872.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599316|gb|EFF43451.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604641|gb|EFF48012.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 61/212 (28%), Gaps = 41/212 (19%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDY 51 M+ F V+ D ET G D + A V + D ++ E+ PA Sbjct: 18 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLV-PAPGL 76 Query: 52 LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101 DP+++ ITGI L A+ + I+ +N F Sbjct: 77 EIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHF 132 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + R + + S +D + + Y G T Sbjct: 133 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 175 Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 176 AQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 >gi|21242321|ref|NP_641903.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306] gi|24638164|sp|Q8PM62|RNT_XANAC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21107753|gb|AAM36439.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306] Length = 213 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 61/212 (28%), Gaps = 41/212 (19%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDY 51 M+ F V+ D ET G D + A V + D ++ E+ PA Sbjct: 18 MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLV-PAPGL 76 Query: 52 LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101 DP+++ ITGI L A+ + I+ +N F Sbjct: 77 EIDPKSLEITGI----VLDHPFRFAKQEKEALDHVFAPVRAAVKKYGCQRAILVGHNAHF 132 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + R + + S +D + + Y G T Sbjct: 133 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 175 Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193 A +AH A D T L I Sbjct: 176 AQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 >gi|322516220|ref|ZP_08069152.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus vestibularis ATCC 49124] gi|322125284|gb|EFX96649.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus vestibularis ATCC 49124] Length = 196 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E F + Q + +++++ E+++ + F D +TG Sbjct: 5 ETYIAFDLE-FNTVDGVSHIIQVSAIKLNQH-EEVDQFDSFVYS---DVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E+ F +T +IGYN ++ D + + Y Sbjct: 60 ITAYKIAKAPKLES-VLVDFKSFV--GDTPLIGYNALKSDLPI-LAENGLDLEEQYA--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 D+ D A +GI + KL +A GI+ + H++ D Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAQIYEKFLELDEN 171 >gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B] gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B] Length = 214 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D ST F +P + + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201 >gi|260598318|ref|YP_003210889.1| exodeoxyribonuclease X [Cronobacter turicensis z3032] gi|260217495|emb|CBA31655.1| Exodeoxyribonuclease 10 [Cronobacter turicensis z3032] Length = 220 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 71/265 (26%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V + + D +A+ I IT Sbjct: 4 IIDTETCGL---QGGVVEVASVDI-IDGAIVNPMSDL---VRPDRPISHQAMAIHKITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + R H + +N FD R W Sbjct: 57 MVADKPYIE-DVIPRYH------GSPWYVAHNASFD---------RKVLPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KLQ A G+ H H A D Y T A Sbjct: 97 --ICTVKLARRLWP-----GIRYSNMGLYKSLKLQVETPA-GLHH---HRALFDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV-AW 245 L+ I + E + + + QL + + +A + Sbjct: 146 LLLEIMKVSGWTPEEMVNITGRPQLIATLP---------------FGKYRGEPVADIAGR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y ++ + + L Sbjct: 191 DPGYLRWMLNNVKQLNPDLRLTLKH 215 >gi|325983556|ref|YP_004295958.1| exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212] gi|325533075|gb|ADZ27796.1| Exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212] Length = 181 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + DR + A V D Q + V D+ L D Sbjct: 6 NNLIWVDMEMTGLNPDNDRIIEVALVITDSQLNTVAEGPVLVVHQPDEILNGMDKWNQST 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + K + EAE ++ +F + + N+I D + + Sbjct: 66 HAKSGLIDKVKASTLKEAEVEAQMVEFLKLHVPSGISPMCGNSICQDRRFMVRSMPQLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|330720110|gb|EGG98518.1| Ribonuclease T [gamma proteobacterium IMCC2047] Length = 187 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 26/201 (12%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITGITPQK 67 ET G + A D + A V + + + T F KP + + A+ TGI P Sbjct: 2 ETGGFNAATDALLEIAAVPIQMDEQGLLYPGETLSFHVKPFEGANIEEAAIKFTGIDPYH 61 Query: 68 ALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 LR E E I + I+ +N FD + R + Sbjct: 62 PLRIANTEQEAMDGIFRTVRKAVKASGCKRAILVGHNAHFDHGFVNAAAERCDIKRNPFH 121 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + L + + + AH A+ D Sbjct: 122 PFSNFDTVSLAGLAVGQTVLARACE-----------------VAEIEFSNEEAHSARYDT 164 Query: 182 YATLALVWLIREKKPKLFEYL 202 T L I + +L +L Sbjct: 165 EKTAELFCFIANRWRELGGWL 185 >gi|262273022|ref|ZP_06050841.1| oligoribonuclease [Grimontia hollisae CIP 101886] gi|262222932|gb|EEY74238.1| oligoribonuclease [Grimontia hollisae CIP 101886] Length = 181 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + + A + D + + + V +D+ L D Sbjct: 6 KNLIWIDLEMTGLDPEVHKVIEIATIVTDAELKVLAEGPVLAIHQSDEELAKMDEWCTKT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 + ++ + EA+ + F I N++ D + Sbjct: 66 HTRSGLVERVKESTINEAQAVKETIAFLQEWVPAGVSPICGNSVGQDRRFLYKHMPDLER 125 Query: 116 DSYRWS 121 + + Sbjct: 126 FFHYRT 131 >gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202] gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202] Length = 216 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + + +P + + +++ G Sbjct: 21 VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFDQGFLQAAAKR---- 136 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + +F + AH Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMANIAF-----------DGKQAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 184 ALYDTEKTTELFCTMVNR 201 >gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] Length = 225 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|259908234|ref|YP_002648590.1| exodeoxyribonuclease X [Erwinia pyrifoliae Ep1/96] gi|224963856|emb|CAX55358.1| DNA exonuclease X [Erwinia pyrifoliae Ep1/96] gi|283478165|emb|CAY74081.1| exodeoxyribonuclease X [Erwinia pyrifoliae DSM 12163] Length = 221 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A V V + + D +A+ + IT Sbjct: 2 FRVIDTETCGL---QGGVVEVASVDV-ISGQILNPMSDLIS---PDRPISRQAMAVHKIT 54 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + R H + +N FD Sbjct: 55 EAMVRGKPAIE-QAIGRYH------GSPFYVAHNASFDRRM------------------L 89 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + M WP + + + ++AH A D Y T Sbjct: 90 PEMHGDWICTMTLARRL------WPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVT 143 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 144 AALLMRIMSF 153 >gi|227524779|ref|ZP_03954828.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290] gi|227088056|gb|EEI23368.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290] Length = 177 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 28/200 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + A V V T F+ + + + GI Sbjct: 2 NFAAMDFET--ANAKRASACSLALVIVRNNQV----THEFYSLINPETDFSWRNINVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q E I F+ ++ +N FD+ + R Sbjct: 56 HKQDVANAP-TFPELWDHIAPLFTANK--LVVAHNASFDNSVLKRTLERY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D++ Y + KL + IE + H+A D A Sbjct: 103 ---------DLLLPHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVA 153 Query: 184 TLALVWLIREKKPKLFEYLY 203 ++ +++ + Sbjct: 154 CANILLTQQQQFGNSVLRNF 173 >gi|187924944|ref|YP_001896586.1| oligoribonuclease [Burkholderia phytofirmans PsJN] gi|187716138|gb|ACD17362.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phytofirmans PsJN] Length = 203 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G + DR + A V + +++ V +D+ L D Sbjct: 19 NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAKMDQWNQNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + V EA+ + +I F SV P + N+I D + Sbjct: 79 GRSGLIDRVKASTVSEADAAEQIRDFLSVFVPPGKSPMCGNSICQDRRFMARWMPDLERF 138 Query: 117 SYRW 120 + Sbjct: 139 FHYR 142 >gi|324015053|gb|EGB84272.1| exonuclease [Escherichia coli MS 60-1] Length = 199 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60 >gi|284030055|ref|YP_003379986.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] gi|283809348|gb|ADB31187.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] Length = 202 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58 M + V D E G D+A D + A + D + + P L Sbjct: 1 MNDRLVWIDCEMTGLDLAADALIEVAVLVTDYELNVLGEGIDLVIAPPPAALEQMGQFVR 60 Query: 59 FIT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + G+ + A + EAE I + P + N++ D + Sbjct: 61 DMHTGSGLLDELATGIPLAEAEQQVLDFITGYVKEPRKAALAGNSVGTDRTF 112 >gi|21221244|ref|NP_627023.1| oligoribonuclease [Streptomyces coelicolor A3(2)] gi|289771467|ref|ZP_06530845.1| oligoribonuclease [Streptomyces lividans TK24] gi|11133768|sp|P57666|ORN_STRCO RecName: Full=Oligoribonuclease gi|9588056|dbj|BAB03461.1| oligoribonuclease [Streptomyces coelicolor A3(2)] gi|10303264|emb|CAC10102.1| oligoribonuclease [Streptomyces coelicolor A3(2)] gi|289701666|gb|EFD69095.1| oligoribonuclease [Streptomyces lividans TK24] Length = 200 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 57/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P + L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERALETMPEVVR 60 Query: 60 ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + G+ EA+ + + P + N++ D + Sbjct: 61 ------EMHTASGLLAELDGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ + + P A N Sbjct: 113 -----LLRDMATLEGYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 E H A AD+ ++A + RE Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174 >gi|300940651|ref|ZP_07155212.1| exonuclease [Escherichia coli MS 21-1] gi|300454539|gb|EFK18032.1| exonuclease [Escherichia coli MS 21-1] Length = 199 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60 >gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1] gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1] Length = 220 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G A V V + + + +P D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVDIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E + + + +N FD W Sbjct: 57 MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + M+ WP + ++ H A D Y T Sbjct: 97 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 LI + + + P + + F + ++ VA Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + S + L Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215 >gi|300957822|ref|ZP_07170001.1| exonuclease [Escherichia coli MS 175-1] gi|300315482|gb|EFJ65266.1| exonuclease [Escherichia coli MS 175-1] Length = 199 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60 >gi|227886794|ref|ZP_04004599.1| exoribonuclease II [Escherichia coli 83972] gi|300816535|ref|ZP_07096756.1| exonuclease [Escherichia coli MS 107-1] gi|300821256|ref|ZP_07101404.1| exonuclease [Escherichia coli MS 119-7] gi|300899700|ref|ZP_07117927.1| exonuclease [Escherichia coli MS 198-1] gi|300905993|ref|ZP_07123717.1| exonuclease [Escherichia coli MS 84-1] gi|300922430|ref|ZP_07138550.1| exonuclease [Escherichia coli MS 182-1] gi|300929272|ref|ZP_07144748.1| exonuclease [Escherichia coli MS 187-1] gi|300974947|ref|ZP_07172786.1| exonuclease [Escherichia coli MS 45-1] gi|300975250|ref|ZP_07172914.1| exonuclease [Escherichia coli MS 200-1] gi|301047612|ref|ZP_07194678.1| exonuclease [Escherichia coli MS 185-1] gi|301302580|ref|ZP_07208710.1| exonuclease [Escherichia coli MS 124-1] gi|301325927|ref|ZP_07219348.1| exonuclease [Escherichia coli MS 78-1] gi|301646609|ref|ZP_07246475.1| exonuclease [Escherichia coli MS 146-1] gi|309796975|ref|ZP_07691375.1| exonuclease [Escherichia coli MS 145-7] gi|227836136|gb|EEJ46602.1| exoribonuclease II [Escherichia coli 83972] gi|281181261|dbj|BAI57591.1| oligoribonuclease [Escherichia coli SE15] gi|300300491|gb|EFJ56876.1| exonuclease [Escherichia coli MS 185-1] gi|300308749|gb|EFJ63269.1| exonuclease [Escherichia coli MS 200-1] gi|300356743|gb|EFJ72613.1| exonuclease [Escherichia coli MS 198-1] gi|300402160|gb|EFJ85698.1| exonuclease [Escherichia coli MS 84-1] gi|300410435|gb|EFJ93973.1| exonuclease [Escherichia coli MS 45-1] gi|300421249|gb|EFK04560.1| exonuclease [Escherichia coli MS 182-1] gi|300462765|gb|EFK26258.1| exonuclease [Escherichia coli MS 187-1] gi|300526145|gb|EFK47214.1| exonuclease [Escherichia coli MS 119-7] gi|300530765|gb|EFK51827.1| exonuclease [Escherichia coli MS 107-1] gi|300842105|gb|EFK69865.1| exonuclease [Escherichia coli MS 124-1] gi|300847280|gb|EFK75040.1| exonuclease [Escherichia coli MS 78-1] gi|301075156|gb|EFK89962.1| exonuclease [Escherichia coli MS 146-1] gi|308119388|gb|EFO56650.1| exonuclease [Escherichia coli MS 145-7] gi|315255507|gb|EFU35475.1| exonuclease [Escherichia coli MS 85-1] gi|315288511|gb|EFU47909.1| exonuclease [Escherichia coli MS 110-3] gi|315294059|gb|EFU53411.1| exonuclease [Escherichia coli MS 153-1] gi|315297605|gb|EFU56882.1| exonuclease [Escherichia coli MS 16-3] gi|324008605|gb|EGB77824.1| exonuclease [Escherichia coli MS 57-2] gi|324019342|gb|EGB88561.1| exonuclease [Escherichia coli MS 117-3] Length = 199 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60 >gi|21911144|ref|NP_665412.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS315] gi|21905355|gb|AAM80215.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes MGAS315] Length = 208 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + ++ +D E + D Q + V+ D ++++S + + D + Sbjct: 18 DTYIAFDLE---FNTVNDVSHVIQGSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K VE E F +IGYN + D + D Y+ Sbjct: 71 TGITSNKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167 Query: 181 VYATLALVWLIREKKPK 197 T A+ E Sbjct: 168 ARMTAAIYESFLETDTN 184 >gi|333011146|gb|EGK30560.1| exonuclease family protein [Shigella flexneri K-272] gi|333012659|gb|EGK32039.1| exonuclease family protein [Shigella flexneri K-227] Length = 181 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDTNLNILAE 42 >gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827] gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827] Length = 181 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 19/135 (14%) Query: 1 MT----NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--------STEVFFCKPA 48 M N+ + D E G D DR + A + D Q + T+ Sbjct: 1 MMQKNENNLIWIDLEMTGLDPERDRIIEIATIVTDSQLNILAQGPVIAVHQTQAQLDLMD 60 Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYY 105 + + A + ++ E E +F I N++ D + Sbjct: 61 EWNVNTHTASGL----VERVKSSTFSEREAELATIEFLEQWVPKGASPICGNSVGQDRRF 116 Query: 106 SRNIFYRNFYDSYRW 120 + Sbjct: 117 LFRYMPELESYFHYR 131 >gi|156932395|ref|YP_001436311.1| oligoribonuclease [Cronobacter sakazakii ATCC BAA-894] gi|156530649|gb|ABU75475.1| hypothetical protein ESA_00171 [Cronobacter sakazakii ATCC BAA-894] Length = 185 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 10 NNLIWIDLEMTGLDPRQDRIIEIATLVTDANLNILAE 46 >gi|13097555|gb|AAH03502.1| REXO2 protein [Homo sapiens] Length = 79 Score = 57.1 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 14/39 (35%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 M V D E G D+ D+ + A + D + Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAE 77 >gi|71282475|ref|YP_271028.1| oligoribonuclease [Colwellia psychrerythraea 34H] gi|123630997|sp|Q47VZ4|ORN_COLP3 RecName: Full=Oligoribonuclease gi|71148215|gb|AAZ28688.1| oligoribonuclease [Colwellia psychrerythraea 34H] Length = 181 Score = 57.1 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + + D E G + D + A + D + + +F DD L +P + Sbjct: 7 NLIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNMNPWCIEHH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 G + Q+ V A ++ F + N+I D + Sbjct: 67 GKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCGNSIGQDRRFINK 118 >gi|327271053|ref|XP_003220302.1| PREDICTED: ERI1 exoribonuclease 3-like [Anolis carolinensis] Length = 229 Score = 57.1 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 38 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHSQLTPFCTELTG 97 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + S + D Sbjct: 98 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 145 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 146 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDC 205 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 206 KNIANIMKTLAHR 218 >gi|157373929|ref|YP_001472529.1| oligoribonuclease [Shewanella sediminis HAW-EB3] gi|157316303|gb|ABV35401.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 181 Score = 57.1 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G D ++DR + A + D++ + V +++ L D Sbjct: 6 NNLIWVDLEMTGLDPSVDRVIEIATIVTDKELNILAEGPVIAIHQSEEQLARMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + E + F S + N+I D + Sbjct: 66 HGESGLVDRVRASKYSEEQAVAMTIAFLSQHATKGDSPMCGNSIGQDRRFMNRYMPELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17] gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17] Length = 214 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 14/173 (8%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKI-ESTEVFFCKPADDYL 52 M+ F V+ D ET G + A D + A V V D T + P + Sbjct: 11 MSRRFRGFLPVVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGAN 70 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYS 106 + ++ TGI P R+ V E E I ++ +N FD + Sbjct: 71 FEQSSLDFTGIDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFV 130 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 R + + L + + D + Sbjct: 131 FAASERADIKRNPFHPFSTFDTATLAGLAYGHTVLAQACKLARIPFDSKEAHS 183 >gi|134106503|ref|XP_778262.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260965|gb|EAL23615.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var. neoformans B-3501A] Length = 214 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 50/188 (26%), Gaps = 13/188 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITG 62 V D E G D DR + A + D + ++ + K + L + G Sbjct: 13 LVWVDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVLDNMGDWCREQHG 72 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + Q L + ++ + ++ +++ D + Sbjct: 73 KSGLIQACLDSPYLYDTVVEKVLDYIRRWIPERGAGLLAGSSVHADMRFMLMGMPEVMKH 132 Query: 117 SYRW-----SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 S RW + + + + D A+ +L+ + Sbjct: 133 LSYRILDVSSVKEICRRWYPKVRAQEQESRTTECSHRALDDIRASIQELKFYRDNIFLPL 192 Query: 172 VNAHDAKA 179 D + Sbjct: 193 EPVTDGRT 200 >gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7] gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7] Length = 196 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 16/200 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPEAV 58 M + D ET G + + Q D E+ F D P EA Sbjct: 1 MKK--IFLDTETTGLEP--GQIIQLTYCVCDINSRGEEKVCFAKNFFFDVDYVEPSAEA- 55 Query: 59 FITGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--- 113 + G + ++ G + + + I +N RFD + F R Sbjct: 56 -VHGFSVERLKTLSMGQEFKDAASEVAADLE--GGIFIAHNV-RFDQKFVTAEFDRLNSI 111 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++ ++ + + + +P + + LQ + V+ Sbjct: 112 HWNPAKFFCTMQYFKSKVNAKTKTGRLKNPRLEETMDFLRVDQNKVLQGAKKLFNCDDVD 171 Query: 174 AHDAKADVYATLALVWLIRE 193 HDA+ DV ++ + R+ Sbjct: 172 FHDARYDVAGLVSCYYRARK 191 >gi|295131162|ref|YP_003581825.1| Oligoribonuclease [Propionibacterium acnes SK137] gi|291377019|gb|ADE00874.1| Oligoribonuclease [Propionibacterium acnes SK137] Length = 205 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 19/133 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PE 56 M + V D E G D+A D + A + D Q KP +L Sbjct: 1 MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVR 60 Query: 57 AVFIT---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + T G+T +A + I + + N I D + Sbjct: 61 NMHTTSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLA 114 Query: 108 NIFYRNFYDSYRW 120 + + Sbjct: 115 KDMPKLASYVHYR 127 >gi|119187187|ref|XP_001244200.1| hypothetical protein CIMG_03641 [Coccidioides immitis RS] Length = 137 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 11/111 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEA---VFI 60 V D E G D D Q + D + E F Y+ + V Sbjct: 10 LVWIDCEMTGLDPETDHILQISCFLTDADLNLL-EPEGFHVTVHQPQYILSSMSSWCVST 68 Query: 61 TGIT--PQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYY 105 G + L +E + I ++ T ++ N++ D + Sbjct: 69 HGRSGLTAAVLDSTTTPSEAASALLAYIQKYIPESRTALLAGNSVHADRAF 119 >gi|327265893|ref|XP_003217742.1| PREDICTED: three prime repair exonuclease 1-like [Anolis carolinensis] Length = 329 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 36/253 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQ---FAGVRVD-RQWE--------------KIESTEVFF 44 FV D E G + + A+ FA R + ++ Sbjct: 13 ETFVFMDLEATGLPPSRPKIAEMCLFAVTRHALENLQYRNSHPKPIPLFPRVVDK---LC 69 Query: 45 CKPADDYLPDPEAVFITGITPQK--ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIR 100 D P A ITG+T + + + + FF P C++ +N Sbjct: 70 VCINPDKPFTPMASSITGLTNEMFSWNKKQKFNLDILHMMTAFFIRQHPPICLVAHNGCS 129 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG---ATS 157 +D + +G D L M+A+ + Q+ Sbjct: 130 YDFPLLKAELSALGLSGL-----DGIYCADTLKAMKALDKENIQLSQFIYESKQCGKKMK 184 Query: 158 FKLQDL-ALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 + LQD+ N+H A+ DV + + + ++ + R N R + Sbjct: 185 YGLQDMYFRFYKAYPPNSHSAEGDVITLINIF--QQSATDLMWWMDSNARPFNTTRAMYQ 242 Query: 217 IQNMTPLVHVSGM 229 P + Sbjct: 243 DSERLPDFLQTHE 255 >gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN] gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN] Length = 183 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET A + AG+ + + + +E+ + +P + + + GI Sbjct: 5 NFIAIDFET--ASNAQAAICE-AGISIVKGGKVVETR-SWLVRP-EGNAYNYWNTRVHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + I + + I+ +N FD R + ++ Sbjct: 60 TAKDTAHAPE-FPQVWNEIMTYLADCP--ILVAHNAGFDMGCIRRSLAFYGLKTPEITY- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +RA KL+ L I + H A D Sbjct: 116 --------YCSLRAARKIYDFECN-----------KLEFLCQKFEIPYGQHHRAGDDAAM 156 Query: 184 TLALV 188 L Sbjct: 157 CAHLF 161 >gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12] gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12] Length = 223 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 62/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + ++ T + +P + +P+A+ G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E E I + + II +N FD + R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + D + L GI+ N A Sbjct: 140 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACSIAGIDFDNNEA 180 Query: 175 HDAKADVYATLALVWLIREK 194 H A D T L I K Sbjct: 181 HSALYDTERTAELFCHIVNK 200 >gi|182438534|ref|YP_001826253.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779181|ref|ZP_08238446.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1] gi|11133770|sp|P57667|ORN_STRGR RecName: Full=Oligoribonuclease gi|6277197|dbj|BAA86266.1| ORF1 [Streptomyces griseus] gi|178467050|dbj|BAG21570.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659514|gb|EGE44360.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1] Length = 201 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G +A D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + +AE + + P + N++ D + Sbjct: 61 QMHTASGLLDELAGGTTLADAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMREL 120 Query: 114 FYDSYRW 120 + Sbjct: 121 EGYLHYR 127 >gi|254448875|ref|ZP_05062331.1| oligoribonuclease [gamma proteobacterium HTCC5015] gi|198261565|gb|EDY85854.1| oligoribonuclease [gamma proteobacterium HTCC5015] Length = 185 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 ++ + D E G D D + A + D+ I + D + D Sbjct: 10 DNLIWIDLEMTGLDTVNDEIIEIATIVTDKALNVIAEGPMLAIHQPDAVMDGMDEWNTRQ 69 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ V E R+ +F + N+I D + + Sbjct: 70 HGQSGLTERVKNSDVNMQEAERQTIEFLEQYVGARKSPMCGNSICQDRRFMARQMPQLEA 129 Query: 116 DSYRW 120 + Sbjct: 130 YFHYR 134 >gi|238603146|ref|XP_002395870.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553] gi|215467348|gb|EEB96800.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553] Length = 151 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 8/123 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63 V D E G D D+ + A + + E ++ + K L G Sbjct: 16 VWIDCEMTGLDPETDKIMEIAVLITNGNLELVDEGIEYIVKLDRKQLDRMGEWCTKQHGE 75 Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDS 117 + + L + S + + ++ N+I D + Sbjct: 76 SGLTKACLSSPFTKDYVSEEVLAYIKKWIPVQRTGVLAGNSIHMDRMFLAKEMPEITDWL 135 Query: 118 YRW 120 + Sbjct: 136 HYR 138 >gi|332994645|gb|AEF04700.1| oligoribonuclease [Alteromonas sp. SN2] Length = 181 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 10/131 (7%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55 MT + V D E G D + A + D Q + V DD L D Sbjct: 1 MTKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNVLAEGPVIAVHQPDDVLDNMDE 60 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIF 110 + G T + V EAE +R+ F S + N I D + Sbjct: 61 WCTRVHGETGLTARCRASSVNEAEAARQTMAFLSDYVDAGKSPLCGNTIGQDRRFMVKYM 120 Query: 111 YRNFYDSYRWS 121 + S Sbjct: 121 PELEDYFHYRS 131 >gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1] gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1] Length = 223 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D + T F P + ++ TG Sbjct: 19 VVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEKASLEFTG 78 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P A+ + V E + + S I+ +N FD + R Sbjct: 79 IDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAATQRAAIK 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L V + +A AH Sbjct: 139 RNPFHPFSCFDTATLGGVALGQTVLARAC-----------------IAAGISFNQKEAHS 181 Query: 177 AKADVYATLALVWLIREK 194 A D T L I + Sbjct: 182 ALYDADKTADLFCHIVNR 199 >gi|254520783|ref|ZP_05132839.1| exonuclease [Clostridium sp. 7_2_43FAA] gi|226914532|gb|EEH99733.1| exonuclease [Clostridium sp. 7_2_43FAA] Length = 252 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 54/239 (22%), Gaps = 37/239 (15%) Query: 4 HFVIYDYE---------TFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFF 44 ++++ D E T ++ Q V+++ E + Sbjct: 2 NYIVCDLEFNQKYIPSNTTDKNNNESIDSTMKQLPFEIIQIGAVKINENLEITSNFNELI 61 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 +P +P IT I + +R F + + Sbjct: 62 -RPIVYTDINPYVENITKINKDMLSSC-ETFSNVYKRFLNFLGDDEAVLCVWGKSDI--- 116 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 F RN + + + D+ + G + Sbjct: 117 ---KEFLRNIKFNNLSTSLFPSKYIDV----------QKHTSKLFHIQKGKQIGLKTAVE 163 Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 + N H+A D T + I Y + R K+ Sbjct: 164 MLNIDFENKFHNAFYDALYTYKVFKKIYNPSIIPKIYNDNNRTHKTKVKIDTDALFKQF 222 >gi|260801283|ref|XP_002595525.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae] gi|229280772|gb|EEN51537.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae] Length = 222 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 63/200 (31%), Gaps = 16/200 (8%) Query: 5 FVIYDYETFGRDVALD----RPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVF 59 + + D+E +F V VD ++ + F C+P ++ + Sbjct: 10 YCVVDFEATCIKPRRADFRTEIIEFGAVIVDGSNFQMADEFHEF-CRPVENPVLHQFCKE 68 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI Q + R ++ S + + D + N R+ + + Sbjct: 69 LTGI-QQDTVDSADPFPVVFDRFQKWLSNRGLIDSNF-ALVTDGIFDCNQIMRSQCEVSQ 126 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178 S+ + R+ + + G + ++ D+ A GI H A Sbjct: 127 MSFPSFARRFSNIKI-------HYMQFMGIRLRRGQPTPRIPDMLRALGISQEGQLHSAI 179 Query: 179 ADVYATLALVWLIREKKPKL 198 +D ++ + + Sbjct: 180 SDARNICRIMEALSRRLRAN 199 >gi|118790162|ref|XP_318057.3| AGAP004759-PA [Anopheles gambiae str. PEST] gi|116122385|gb|EAA13240.3| AGAP004759-PA [Anopheles gambiae str. PEST] Length = 191 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 23/133 (17%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60 + V D E G DV DR + A + D + I + + + P+AV Sbjct: 7 QNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAK--------GPNIIINEPDAVLAG 58 Query: 61 --------TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSR 107 + + + + R + F C + N+I D + Sbjct: 59 MNSWCKDHHSKSGLIEAVKKSTYSVDQAERDVLDFVKKYCPERKCPMAGNSIYMDRLFIM 118 Query: 108 NIFYRNFYDSYRW 120 + Sbjct: 119 KYMPTLNEYLHYR 131 >gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2] gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2] Length = 228 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 55/205 (26%), Gaps = 26/205 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V ++ + F P + A+ TG Sbjct: 24 VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLEQAALDFTG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LR V E + + + ++ +N FD + R Sbjct: 84 IDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLNAATDRTDIK 143 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L ++ + A AH Sbjct: 144 RNPFHPFSSFDTATLAGLVYGQTVLAKACE-----------------AAGIRFSQREAHS 186 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A D T L + + L + Sbjct: 187 ALYDATRTAELFCSMVNRFKTLGGW 211 >gi|255022249|ref|ZP_05294243.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756] gi|254968305|gb|EET25873.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756] Length = 211 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 25/191 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGI 63 V+ D E+ G + + A + + ++ F +P DP A+ GI Sbjct: 15 VVVDVESAGFEAHRHALLEIAAIVITHADGQWQLGPRHHFHVEPFAGAELDPAALAFNGI 74 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 P + LR + EAE +++ ++ +N FD + R + Sbjct: 75 DPYQPLRGALPEAEVFGTLYRALRKAVKEAHCRRAVLVGHNAHFDLSFLHAAEKRLRLKN 134 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + + L + A + + + AH A Sbjct: 135 SPFHPFSVIDTVSLAALALAETVLAKAVQK-----------------AGLAWDGREAHSA 177 Query: 178 KADVYATLALV 188 D T L Sbjct: 178 LYDAERTAELF 188 >gi|294791066|ref|ZP_06756224.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304] gi|294458963|gb|EFG27316.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304] Length = 282 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 5/110 (4%) Query: 1 MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 + F++ +D ET G D + V + +P A Sbjct: 21 LKESFLLGFDTETTGTRAGKDAIVSASLVLRNPALGFNGD-STQDWIINPGIPMNPRASQ 79 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYS 106 + G T G +A+ I N ++ YN + Sbjct: 80 VNGFTDDYLREHGANQADSIALIANSIIKAQIRNIPLLAYNAPFDITMLN 129 >gi|237809227|ref|YP_002893667.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM 9187] gi|237501488|gb|ACQ94081.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM 9187] Length = 181 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G + DR + A + D++ + V +DD L D Sbjct: 6 QNLIWLDMEMTGLEPETDRILEIAMIVTDKELNVLAEGPVLAIHQSDDVLAGMDEWNTRT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + EA+ F + N+I D + Sbjct: 66 HGESGLVDRVRASECDEAKAVATCLTFIREWVPEGKSPMCGNSIGQDRRFMVRYMPELEK 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT] Length = 213 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 21 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 80 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 81 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 140 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 141 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 181 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 182 HSARYDTEKTAELFCGIVNRWKEMGGW 208 >gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7] Length = 225 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|321476304|gb|EFX87265.1| hypothetical protein DAPPUDRAFT_312568 [Daphnia pulex] Length = 219 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 21/203 (10%) Query: 3 NHFVIYDYETFGR-DVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPA----DDYLPD 54 V +D ET G D + + +DR + + + Sbjct: 9 KSLVFFDLETTGFKDP---EITELSFCSIDRSQFLNCQRGEFPRITNRLNLCIKPSKQIE 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112 P+A IT + + + + F + C++ +N +FD F R Sbjct: 66 PKASEITKLDNCNLDHQSPFDEDVGNIVLSFLNRLKKPVCLVAHNGFKFDFPILLAEFSR 125 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEH 171 + + + D L + R P+ + SF L+++ G + Sbjct: 126 LYG---IMDFPSDIFSVDSLAIFRN----LSQSPSSPNLKNIRLSFALKNVYYRIYGRDP 178 Query: 172 VNAHDAKADVYATLALVWLIREK 194 H+A+ADV L E+ Sbjct: 179 EERHEAEADVKVLLLSAIATPEE 201 >gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5] Length = 225 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|229004425|ref|ZP_04162172.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock1-4] gi|228756825|gb|EEM06123.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock1-4] Length = 44 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%) Query: 1 MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIEST 40 M+ +V+ D ET G DR Q A V V E +E Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDRITQIAAVVV-EDGEILEIF 41 >gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a] gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642] gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a] Length = 225 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|312092765|ref|XP_003147452.1| exonuclease [Loa loa] gi|307757384|gb|EFO16618.1| exonuclease [Loa loa] Length = 401 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 10/208 (4%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D+E +F + VD + ++I + +P + T Sbjct: 150 FVVIDFECTCEADLYDYNHEIIEFPAILVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFT 209 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + + + + + + +G +R+ F+ Sbjct: 210 GITQEMVDKA-LPFIDVLDSFRAWMQLH---HLGQKEVRYAFVTDGPWDIAKFFQMQCIQ 265 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D + +F+ + S L L + H D Sbjct: 266 SKLNPIPHDFRFYVNVRRSFANKYCKKHPTQKINLSRMLTSLNMKF---EGREHSGLDDS 322 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209 +V + K +L R K+ Sbjct: 323 KNIAKIVIRMLGDKSELRVNEKLVRIKD 350 >gi|282848807|ref|ZP_06258200.1| exonuclease [Veillonella parvula ATCC 17745] gi|282581461|gb|EFB86851.1| exonuclease [Veillonella parvula ATCC 17745] Length = 327 Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 36/220 (16%) Query: 4 HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++++D E + Q V+++ + + I+ +F Y Sbjct: 2 NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMF---IKPQY 58 Query: 52 LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 LP +TGIT + GV + + + + D R Sbjct: 59 LPRMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILREN 114 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + + + ++ + + + ++DL Sbjct: 115 LMLHKMKALSYDQ-------------WVDAQMIYSYQRYGTSQQYSVAHAMEDL--NIST 159 Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 EH++AH+A D T + + + L L + N Sbjct: 160 EHLSAHNALHDAVFTAHICQTLDIAQGILHYDLIRKESSN 199 >gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC 14931] gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC 14931] Length = 189 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET A + + R + + + + + GI Sbjct: 12 NFIAMDFET--ASAKRFSACSLA-ITIVRNSQIQDEFYTLINPQTPFFWRN---TQVHGI 65 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E I +FF+ P+ +I +N + + + + Sbjct: 66 HERDVKDAP-TFPEVWEHIQEFFT-PDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQT-- 121 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L R + KL + I+ + H+A D +A Sbjct: 122 -----LDTLKTSR-------------QLFPAFPNHKLNTICDQLNIDLHHHHNALDDAHA 163 Query: 184 TLALVWLIREK 194 ++ Sbjct: 164 CANILLYQANH 174 >gi|224058011|ref|XP_002190758.1| PREDICTED: prion protein interacting protein [Taeniopygia guttata] Length = 271 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 80 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 139 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + S + D Sbjct: 140 IIQGMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 187 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 188 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDC 247 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 248 KNIANIMKTLAHR 260 >gi|72386559|ref|XP_843704.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62175749|gb|AAX69877.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800236|gb|AAZ10145.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 397 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 33/194 (17%) Query: 8 YDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +D E G D +F + +P++ PE +T Sbjct: 90 FDLEFTGPPVFGPDGPTED-IMEFGFYSPAH-----DKVFSCLVRPSNGRCVSPEVTTLT 143 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT----------CIIGYNNIRFDDYYSRNIFY 111 IT + DG+ + ++ F + P ++ + D + Sbjct: 144 HITQKMLEEDGLPFRDAWAKVLDFLNTPEPQELPGAEKRLLVLSHGGKLADVSLIKWTLE 203 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IE 170 + + D ++R + P D ++ L DL Sbjct: 204 ASGMELPSNIIFG-----DTFHLIRDAHRRRPVT-----LDKHPPTWGLSDLVQWLRIPP 253 Query: 171 HVNAHDAKADVYAT 184 + AH A D T Sbjct: 254 TLPAHRAGNDAKMT 267 >gi|270676235|ref|ZP_06222692.1| ribonuclease T [Haemophilus influenzae HK1212] gi|270316426|gb|EFA28313.1| ribonuclease T [Haemophilus influenzae HK1212] Length = 164 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 9/145 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 11 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 70 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + Q + II +N FD + R Sbjct: 71 IDIHNPLRGTVPELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 130 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAF 141 + L +M Sbjct: 131 RNPFHPFGMFDTASLAGLMFGQTVL 155 >gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG] gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG] Length = 229 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 54/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G D D + A + ++D + F +P + +PE++ G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + Q + II +N FD + R Sbjct: 83 IDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L +M A + AH Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 186 ALYDTERTAKLFCYMVNH 203 >gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] Length = 249 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 45/191 (23%), Gaps = 38/191 (19%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F + D ET G D + A + E + D EA+ I I Sbjct: 31 NFRVIDTETCGLD---GGIVEIASLDF-IDGEITNPMSDL---VSPDRPISIEAMAIHHI 83 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + + +N R W Sbjct: 84 TEEMVEGKPRIAVAVGK------YQGSPYYVAHNAPFD----------RGVLPEMGGEW- 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + A PD A + A H A D Y Sbjct: 127 --------ICTYKLARALYPDIKYSNQYLRYALRLDVTPPADLY------PHRALYDCYI 172 Query: 184 TLALVWLIREK 194 T AL I Sbjct: 173 TAALFQRIMRD 183 >gi|212721064|ref|NP_001131502.1| hypothetical protein LOC100192839 [Zea mays] gi|194691708|gb|ACF79938.1| unknown [Zea mays] Length = 249 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G D+ DR + A + D + I ++ + Sbjct: 70 LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQSKDCLDNMDEWCKTHHA 129 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T ++ L+ + E + ++ F T ++ N++ D + + Sbjct: 130 ASGLT----ERVLQSELSEHDAEAKVLDFVRKHINSGTPLLAGNSVYVDFLFLKK 180 >gi|227357138|ref|ZP_03841507.1| exoribonuclease II [Proteus mirabilis ATCC 29906] gi|227162670|gb|EEI47637.1| exoribonuclease II [Proteus mirabilis ATCC 29906] Length = 192 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D Q + Sbjct: 17 NNLIWIDLEMTGLDPERDRIIEIATIVTDPQLNILAE 53 >gi|254427614|ref|ZP_05041321.1| exonuclease superfamily [Alcanivorax sp. DG881] gi|196193783|gb|EDX88742.1| exonuclease superfamily [Alcanivorax sp. DG881] Length = 181 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G DR + A + D + + Sbjct: 6 NNLIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAE 42 >gi|148977184|ref|ZP_01813811.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145963466|gb|EDK28729.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 210 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 52/200 (26%), Gaps = 21/200 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V D ET D A ++ F + D ++ I I Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSKP--FEVRLRAPQSLDCNSIKIHRIR 87 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Q + G+ E + + F N ++GY+ R + + + Sbjct: 88 HQDL-KHGIEEKQALIELLSFI--GNRPLVGYHIRYDKKILDRACLKQLGFPLPNRLMEV 144 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYA 183 D L+ F + + + N HDA D + Sbjct: 145 SQLYQDKLERQLPNAYF---------------DLSMDAICRQLDLPIPVNKHDALQDAIS 189 Query: 184 TLALVWLIREKKPKLFEYLY 203 + ++ F Y Sbjct: 190 AALIFVRLKHGDLPRFNSSY 209 >gi|21231607|ref|NP_637524.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768271|ref|YP_243033.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004] gi|23821916|sp|Q8P8S1|ORN_XANCP RecName: Full=Oligoribonuclease gi|81305754|sp|Q4UVB0|ORN_XANC8 RecName: Full=Oligoribonuclease gi|21113297|gb|AAM41448.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573603|gb|AAY49013.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004] Length = 194 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 + + D E G D D + A + D Q + L EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIA---HSLETLEAMDEWN 65 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 + Q+ L V A+ + F S + N+I D + R Sbjct: 66 RNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSR 125 Query: 113 NFYDSYRW 120 + Sbjct: 126 LERYFHYR 133 >gi|300770507|ref|ZP_07080386.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300762983|gb|EFK59800.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 203 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%) Query: 3 NHFVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 F+ D+E T A + VRVD+ + P ++Y+ + Sbjct: 4 QSFIAIDFELAT----AAYNSVCSVGIVRVDQ-GVITDEFYSLVKPPKNEYMWQ--TTRV 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI P+ E E +I + +N +FD D Sbjct: 57 HGIKPKDTADAPTFE-EIYPKIKDLLQNRK---MVAHNEKFDREVLSKTMKACGLD---- 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + D G KL GI+ N H+A +D Sbjct: 109 -YRELHLPVMWECTSKIYR------------DKGFKKTKLNLCCEIMGIDL-NHHEALSD 154 Query: 181 VYATLALVWLIREKKPKLFEYLY 203 A L E +L + ++ Sbjct: 155 AKAAAFLYLKQNEVTQELLDRVF 177 >gi|213962982|ref|ZP_03391241.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga sputigena Capno] gi|213954323|gb|EEB65646.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga sputigena Capno] Length = 183 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 25/200 (12%) Query: 1 MTNHFVIYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 MTN +I D E G + + +D +I KP P Sbjct: 1 MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEISDNRGILIKPT-HSKISP 59 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T +TP+ R+GV E + + + + Y N + + R Sbjct: 60 FCTQLTTLTPELVAREGVSFEEAFQILKKEYQAYQYTWASYGNYD-RNMLQKQCALRKLP 118 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 R N + + Q P R + + H Sbjct: 119 YPMRNEHIN-------------VKELFQEVTQHPKRLGMHQALNYLKI-----PLVGTHH 160 Query: 176 DAKADVYATLALVWLIREKK 195 K D Y ++ + + Sbjct: 161 RGKDDAYNIAKIMHCLSHYQ 180 >gi|300864441|ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] gi|300337585|emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] Length = 192 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 40/138 (28%), Gaps = 8/138 (5%) Query: 5 FVIYDYETF-----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 +++ D E + + V V+ + ++ + F KP + Sbjct: 13 YLVLDLEATCCDRETINREHMEIIEIGAVMVEPKNLTIVDEFQTFI-KPVRHPILTEFCK 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T I+ ++ E + + S + + G + ++ + Sbjct: 72 SLTSISQKQVDLAP-TYPEAIALLKNWLSGYSNAVFGSWGDYDRKQFQQDSNFHKVPFPI 130 Query: 119 RWSWDNGNSRWDLLDVMR 136 + N + +R Sbjct: 131 AYPHVNLKQLFTEQQGLR 148 >gi|300721471|ref|YP_003710746.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061] gi|297627963|emb|CBJ88512.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061] Length = 181 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATIVTDSELNILAE 42 >gi|74009144|ref|XP_549356.2| PREDICTED: similar to Three prime repair exonuclease 2 (3-5 exonuclease TREX2) [Canis familiaris] Length = 236 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 36/210 (17%) Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRV----------DRQW-----EKIESTEVFFCK 46 FV D E G +D A+ + V D ++ C Sbjct: 8 ETFVFLDLEATGL-PNIDPEVAEISLFAVHRSSLENPDRDESGAPVVPRVLDKLT--LCM 64 Query: 47 PADDYLPDPEAVFITGITPQKA---LRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRF 101 + + +A ITG++ + G A R + F S C++ +N + Sbjct: 65 -SPERPFTAKASEITGLSSDSLARCRKAGFDHA-VVRTLQAFLSRQEGPVCLVAHNGFDY 122 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D R + + D L +R++ G + G + L Sbjct: 123 DFPLLCTELRRLGAHLPPDT-----TCLDTLPALRSLDRAHSHGTR----AQGCKGYSLG 173 Query: 162 DL-ALANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 174 SLFRRYFRAEPSAAHSAEGDVHTLLMVFLH 203 >gi|78047756|ref|YP_363931.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928670|ref|ZP_08189846.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans 91-118] gi|123585062|sp|Q3BTI2|ORN_XANC5 RecName: Full=Oligoribonuclease gi|78036186|emb|CAJ23877.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540966|gb|EGD12532.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans 91-118] Length = 194 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58 + + D E G D D + A + D Q + E+ P + EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64 Query: 59 --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 + Q+ L V A+ + F S + N+I D + Sbjct: 65 NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 124 Query: 112 RNFYDSYRW 120 R + Sbjct: 125 RLERYFHYR 133 >gi|50086122|ref|YP_047632.1| oligoribonuclease [Acinetobacter sp. ADP1] gi|59798028|sp|Q6F805|ORN_ACIAD RecName: Full=Oligoribonuclease gi|49532098|emb|CAG69810.1| oligoribonuclease [Acinetobacter sp. ADP1] Length = 183 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 11/131 (8%) Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V D L D Sbjct: 1 MSSTQDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNIVAEGPVLAVHQPDRILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + + +F T + N+I D + + Sbjct: 61 EWNTRQHGQSGLIERVRRSKLTARDVELQTLEFLKKWVNPKTSPMCGNSICQDRRFMHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQYFHYR 131 >gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250] gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076] gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020] gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 225 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + +R + E T F +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|19745746|ref|NP_606882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS8232] gi|19747886|gb|AAL97381.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232] Length = 833 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A + + ++S E D V Sbjct: 22 KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIMDSYET---DVNPHESLDEHIV 71 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT ++ + + + I+Q CI +N++FD + Sbjct: 72 HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 ++ R D +++ + + + L L+ I+ AH A Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L + +K L + Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193 >gi|254468761|ref|ZP_05082167.1| oligoribonuclease [beta proteobacterium KB13] gi|207087571|gb|EDZ64854.1| oligoribonuclease [beta proteobacterium KB13] Length = 184 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 N+ + D E G + D+ + A + D E I V+ K +++ L +A Sbjct: 6 NNLIWIDMEMTGLNPVTDKIIEVAVIVTDPHLEIIAEAPVYVIKQSNELLDSMDAWNTNT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + K + E R + F S N + N+I D + N + Sbjct: 66 HSKSGLIDKVKHSQITENVAERELINFLSQYVDKNKSPMCGNSICQDRRFMANYMPQLES 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] Length = 201 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V V + + ++ + V I GI Sbjct: 26 NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 79 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I +F ++ +N FD Sbjct: 80 HQEDVRNAPK-FPEVWQTIQPYFQKN--LLVVAHNAAFDTKVLA---------------- 120 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + Y + +L + I+ + HDA D A Sbjct: 121 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 177 Query: 184 TLALVWLIREK 194 ++ +K Sbjct: 178 CAEILLYQEKK 188 >gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays] gi|194706488|gb|ACF87328.1| unknown [Zea mays] gi|195615060|gb|ACG29360.1| exonuclease [Zea mays] Length = 499 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 26/191 (13%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V R+ ++ S +V Sbjct: 35 IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPASAVSAASVRC 93 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + ++ + G+N +RFD + R + Sbjct: 94 NGITRDAVSAAP-PFRDVADAVYDLLN--GRVWAGHNIVRFD-----SARIREAFTEIGR 145 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S D L ++ A K+ LA G+ H + D Sbjct: 146 SPPQPKGMIDTLPLL------------TQRFGRRAGDMKMASLANYFGLG-KQRHRSLDD 192 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 193 VRMNLEVLKYC 203 >gi|110835071|ref|YP_693930.1| oligoribonuclease [Alcanivorax borkumensis SK2] gi|123050323|sp|Q0VME0|ORN_ALCBS RecName: Full=Oligoribonuclease gi|110648182|emb|CAL17658.1| oligoribonuclease [Alcanivorax borkumensis SK2] Length = 181 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G DR + A + D + + Sbjct: 6 NNLIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAE 42 >gi|197287169|ref|YP_002153041.1| oligoribonuclease [Proteus mirabilis HI4320] gi|194684656|emb|CAR46589.1| oligoribonuclease [Proteus mirabilis HI4320] Length = 181 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D Q + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATIVTDPQLNILAE 42 >gi|77359544|ref|YP_339119.1| DNA polymerase [Pseudoalteromonas haloplanktis TAC125] gi|76874455|emb|CAI85676.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas haloplanktis TAC125] Length = 207 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 20/188 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++ D E G D A V ++ Q K+ ++ K + P Sbjct: 21 LKQRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNLAQSP---VY 77 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI G + + F+ CI+ ++N D + + + Sbjct: 78 HGINNDNVA-AGQSLHSILEHLSEHFND---CILVFHNAMLDWGF--------LKPALKN 125 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + L + G++ L + + + H A D Sbjct: 126 ANITTRPKLILCTLQIEKKRLQHQGVEIKQD-----DLTLNECRNRYELPSYHCHHALTD 180 Query: 181 VYATLALV 188 AT L Sbjct: 181 AQATAELF 188 >gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8] gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8] Length = 221 Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 61/210 (29%), Gaps = 35/210 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVR--VDRQW-EKIESTEVFFCKPADDYL 52 M+ F V+ D ET G + D + A V +D + T V P + Sbjct: 11 MSQRFRGFLPVVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGAN 70 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYS 106 + A+ TGI P R+ V E E I ++ +N FD + Sbjct: 71 LEQSALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFV 130 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + S +D + Y + L Sbjct: 131 FAAALRADIKRNPFH---PFSTFDTATLAGLAYGHTV----------------LAQACKL 171 Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194 GI N AH A D T L I + Sbjct: 172 AGIPFSNKEAHSAAYDAEKTADLFCGIVNR 201 >gi|289426433|ref|ZP_06428176.1| exonuclease [Propionibacterium acnes SK187] gi|289153161|gb|EFD01879.1| exonuclease [Propionibacterium acnes SK187] Length = 205 Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 19/133 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PE 56 M + V D E G D+A D + A + D Q KP +L Sbjct: 1 MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVR 60 Query: 57 AVFIT---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + T G+T +A + I + + N I D + Sbjct: 61 NMHTTSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLA 114 Query: 108 NIFYRNFYDSYRW 120 + + Sbjct: 115 KDMPKLESYVHYR 127 >gi|269797822|ref|YP_003311722.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] gi|269094451|gb|ACZ24442.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] Length = 327 Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 36/220 (16%) Query: 4 HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++++D E + Q V+++ + + I+ +F Y Sbjct: 2 NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMF---IKPQY 58 Query: 52 LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 LP +TGIT + GV + + + + D R Sbjct: 59 LPRMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILREN 114 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + + + ++ + + + ++DL Sbjct: 115 LMLHKMKALSYDQ-------------WVDAQIIYSYQRYGTSQQYSVAHAMEDL--NIST 159 Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 EH++AH+A D T + + + L L + N Sbjct: 160 EHLSAHNALHDAVFTAHICQTLDIAQGILHYDLIRKESSN 199 >gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311] gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311] Length = 176 Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 29/191 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET A V+V ++ + + + I GI Sbjct: 2 NFIAMDFET--ASHERHSACSLALVKV-ENSRIVDEYYTL---IQPETQFFWKNIQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ E + I FF + +I +N FD + + Sbjct: 56 HPEDVTDAPK-FPEIWQGIQLFFQLNQ--LIVAHNAAFDCNVLASC---------LNYYK 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + L ++ F + + KL + A I N H+A D A Sbjct: 104 LPQPNYLSLCTVKTSRKFFREL----------PNHKLDTICRALNIPL-NHHNALDDSRA 152 Query: 184 TLALVWLIREK 194 ++ + Sbjct: 153 CAKILLYQEKN 163 >gi|121705836|ref|XP_001271181.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1] gi|119399327|gb|EAW09755.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1] Length = 217 Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYL-PDPEAV 58 T+ V D E G D D+ Q D ++ E P P + Sbjct: 7 TDPLVWIDCEMTGLDPETDQILQICCYITDANLTLLDRTGFETIIHHPRSTLEAMSPWCI 66 Query: 59 FITGIT------PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G T A+ I +F P T ++ N++ D + Y Sbjct: 67 DTHGRTGLSAAVLASTTDAATAAADLLAYIQRFVPRPRTALLAGNSVHADKMFLARGPYA 126 Query: 113 NFYDSYRW 120 + Sbjct: 127 AVLGWLHY 134 >gi|294139250|ref|YP_003555228.1| oligoribonuclease [Shewanella violacea DSS12] gi|293325719|dbj|BAJ00450.1| oligoribonuclease [Shewanella violacea DSS12] Length = 181 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G D DR + A + D++ + V D+ L D Sbjct: 6 NNLIWVDLEMTGLDPETDRVIEIATIVTDKELNILAEGPVIAIHQTDEQLATMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ E + +F S + N+I D + + Sbjct: 66 HGESGLVERVRSSQYNEDDAIAMTIKFISQYVPQGVSPMCGNSIGQDRRFMNKYMGKLED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|153872366|ref|ZP_02001282.1| Exodeoxyribonuclease I [Beggiatoa sp. PS] gi|152071167|gb|EDN68717.1| Exodeoxyribonuclease I [Beggiatoa sp. PS] Length = 178 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 4/129 (3%) Query: 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LYDGFFADV 368 EN L+ T + + + + D+D + + F + Sbjct: 31 YWNNLSPERQALVEENKNWLQSHTEIFRKIIQYHQEFRYPKIPDLDIEAALYQNDFLSAS 90 Query: 369 DRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKML 428 + + + F D L +L R RN+P L +D+ ++ + Sbjct: 91 ELAKCRQFHAATLPDKIEMVTQFEDIDLRKLASRLLCRNYPDNLPPMLTRDFEDYV-WRV 149 Query: 429 TRSRIEEYK 437 E+ Sbjct: 150 NPENEEDAY 158 >gi|85058292|ref|YP_453994.1| oligoribonuclease [Sodalis glossinidius str. 'morsitans'] gi|123520179|sp|Q2NW86|ORN_SODGM RecName: Full=Oligoribonuclease gi|84778812|dbj|BAE73589.1| putative oligoribonuclease [Sodalis glossinidius str. 'morsitans'] Length = 181 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 N+ + D E G D DR + A + D + ++ D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLAILAEGPVLAIYQSDAQLALMNDWNVRT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + + + + E + F + I N+I D + Sbjct: 66 HTASGL----VDRVRQSALDEEAAVAQTLAFLADWVPAGKSPICGNSIGQDRRFLFRYMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ALEAYFHYR 130 >gi|16763172|ref|NP_458789.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767599|ref|NP_463214.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29144651|ref|NP_807993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56416144|ref|YP_153219.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182799|ref|YP_219216.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161505144|ref|YP_001572256.1| oligoribonuclease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161617623|ref|YP_001591588.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553558|ref|ZP_02347307.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994766|ref|ZP_02575857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231388|ref|ZP_02656446.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237081|ref|ZP_02662139.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244869|ref|ZP_02669801.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263295|ref|ZP_02685268.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467067|ref|ZP_02700915.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822519|ref|ZP_02834519.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446159|ref|YP_002043608.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451819|ref|YP_002048396.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472818|ref|ZP_03078802.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194733922|ref|YP_002117294.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248139|ref|YP_002149267.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263840|ref|ZP_03163914.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365070|ref|YP_002144707.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244671|ref|YP_002218237.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389037|ref|ZP_03215649.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927249|ref|ZP_03218451.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207859499|ref|YP_002246150.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052288|ref|ZP_03345166.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419498|ref|ZP_03352564.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428680|ref|ZP_03361430.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583916|ref|ZP_03365742.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650568|ref|ZP_03380621.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850085|ref|ZP_03380983.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910511|ref|ZP_04654348.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805592|ref|ZP_06536221.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829989|ref|ZP_06547440.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54038786|sp|P65600|ORN_SALTI RecName: Full=Oligoribonuclease gi|54041583|sp|P65599|ORN_SALTY RecName: Full=Oligoribonuclease gi|59797989|sp|Q5PLG7|ORN_SALPA RecName: Full=Oligoribonuclease gi|81309509|sp|Q57GM7|ORN_SALCH RecName: Full=Oligoribonuclease gi|25338361|pir||AI1047 oligoribonuclease (EC 3.1.-.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422913|gb|AAL23173.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505480|emb|CAD06830.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi] gi|29140290|gb|AAO71853.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130401|gb|AAV79907.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130432|gb|AAX68135.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866491|gb|ABX23114.1| hypothetical protein SARI_03281 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366987|gb|ABX70755.1| hypothetical protein SPAB_05483 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404822|gb|ACF65044.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410123|gb|ACF70342.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459182|gb|EDX48021.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709424|gb|ACF88645.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630566|gb|EDX49178.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096547|emb|CAR62157.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211842|gb|ACH49239.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242095|gb|EDY24715.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289951|gb|EDY29310.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939187|gb|ACH76520.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606135|gb|EDZ04680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323914|gb|EDZ09109.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322027|gb|EDZ09866.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327412|gb|EDZ14176.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334333|gb|EDZ21097.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336339|gb|EDZ23103.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341098|gb|EDZ27862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347926|gb|EDZ34557.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711302|emb|CAR35680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249445|emb|CBG27309.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996684|gb|ACY91569.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160842|emb|CBW20373.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915451|dbj|BAJ39425.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088780|emb|CBY98538.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223225|gb|EFX48295.1| 3'-to-5' oligoribonuclease (orn) [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615515|gb|EFY12435.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618575|gb|EFY15464.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622012|gb|EFY18862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627084|gb|EFY23876.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631043|gb|EFY27807.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637738|gb|EFY34439.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642402|gb|EFY39006.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645663|gb|EFY42188.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650497|gb|EFY46905.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653449|gb|EFY49779.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659724|gb|EFY55967.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662065|gb|EFY58281.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666186|gb|EFY62364.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672606|gb|EFY68717.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676036|gb|EFY72107.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680520|gb|EFY76558.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684586|gb|EFY80590.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192901|gb|EFZ78127.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197223|gb|EFZ82363.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201660|gb|EFZ86724.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206174|gb|EFZ91136.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213183|gb|EFZ97985.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215556|gb|EGA00300.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219541|gb|EGA04026.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227844|gb|EGA11998.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229014|gb|EGA13143.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236374|gb|EGA20450.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237506|gb|EGA21567.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241828|gb|EGA25857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248023|gb|EGA31960.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254646|gb|EGA38457.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258295|gb|EGA41972.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259572|gb|EGA43206.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265845|gb|EGA49341.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270289|gb|EGA53737.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332991164|gb|AEF10147.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 181 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 42 >gi|297621033|ref|YP_003709170.1| hypothetical protein wcw_0797 [Waddlia chondrophila WSU 86-1044] gi|297376334|gb|ADI38164.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 195 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 12/192 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D ET G D + +P A D + E + F D L DPE++ + G Sbjct: 4 IFLDIETTGLDPFIHKPIDLAFKIYDIRQDVSIAEYQQKIFQSIEDWNLHDPESIKVNGY 63 Query: 64 TPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T + E E + + N FD + Y Sbjct: 64 TYRDLEEGKRSEKVAEEVIQLLLSHGIERGKAFFICQNPAFDRAFFDR-----IIPVYTQ 118 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKA 179 N W L M ++ + + + + + + GIE H A Sbjct: 119 EKLNWPYHWLDLASMYWVFLLNEEKNERSQLSE-TINLSKNAIGKRFGIEQEAVPHRAMN 177 Query: 180 DVYATLALVWLI 191 V + + Sbjct: 178 GVEHLIKCYRAV 189 >gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum B1 str. Okra] gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum B1 str. Okra] Length = 195 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 10/197 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + Q D E D + A I Sbjct: 1 MKK--IFIDTETTGLEP--GEIIQLTYCVCDINSRGEEKVSFAKNFFFDVDYIEESAEAI 56 Query: 61 TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G + +K G + + I + I +N + + N + Sbjct: 57 HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114 Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + R P + + L+ + V HD Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174 Query: 177 AKADVYATLALVWLIRE 193 A+ DV A ++ + + Sbjct: 175 ARYDVAALVSCYYRAKR 191 >gi|297538700|ref|YP_003674469.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp. 301] gi|297258047|gb|ADI29892.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp. 301] Length = 186 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59 N+ + D E G DR + A V D + + VF +D L +A Sbjct: 10 QNNLIWLDMEMSGLLPDSDRILELAAVVTDADLNVLGESPVFVIHQSDAVLDGMDAWNKG 69 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + +K + E+E + ++ F N + N+I D + Sbjct: 70 AHGRSGLIEKVKASTLDESEATLQMIAFLKQFVPANKSPMCGNSICQDRRFMARYMPDLE 129 Query: 115 YDSYRW 120 + Sbjct: 130 SYFHYR 135 >gi|307945043|ref|ZP_07660379.1| exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] gi|307770916|gb|EFO30141.1| exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] Length = 231 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 39/194 (20%) Query: 4 HFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F + D+ET G + + A +D + + I + PE + + Sbjct: 2 KFRVIDFETTGLPSDTRKAICEAAFCDLDAETDIIADPVSTLV--DPGHSIPPETMAVHH 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q E R + + + +NI F+ ++ +R Sbjct: 60 IRDQDVAGCP-SPTEACRMLMG--GMGEEDVFVAHNIEFEKFFFGGGDHR---------- 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-----NGIEHVNAHDA 177 I WP A S K Q L G + AH A Sbjct: 107 --------------WICTLKCAVRLWP----DAPSHKNQVLRYWKGLTDLGDLALPAHRA 148 Query: 178 KADVYATLALVWLI 191 D + T L+ L+ Sbjct: 149 GPDTFVTAHLLRLM 162 >gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25] gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25] Length = 223 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 37/220 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52 M F V+ D ET G + A D + A + +D Q E T F +P + Sbjct: 21 MAERFRGYLPVVIDVETGGFNCATDALLEIAATTIGMDEQGFVFPEHTHFFRVEPFEGAN 80 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 + A+ TGI A+ + + R + + I+ +N FD + Sbjct: 81 IEAAALEFTGIKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 140 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + S +D + Y + L A Sbjct: 141 NAAVARLDMKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 181 Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREK--KPKLFEYL 202 GI+ AH A+ D T L I + + +E Sbjct: 182 AGIDFDGREAHSARYDTEKTAELFCGIVNRWKQMGGWEDF 221 >gi|261855262|ref|YP_003262545.1| ribonuclease T [Halothiobacillus neapolitanus c2] gi|261835731|gb|ACX95498.1| ribonuclease T [Halothiobacillus neapolitanus c2] Length = 241 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 56/207 (27%), Gaps = 44/207 (21%) Query: 6 VIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLP 53 V+ D ET G + D VD + I + ++ +P + Sbjct: 41 VVVDVETGGLNPQTDALLELAAVLLD--------VDANGKIIPVDRIQI-HVQPFEGANL 91 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSR 107 +P ++ I GI R + EAE ++ Q + ++ +N FD Sbjct: 92 NPVSMKINGIDIDHPFRCALDEAEALKQFFQPIRQRVKLNGARRAVLVGHNAAFDLAVIN 151 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 R + + L + + A+ Sbjct: 152 AACERTCNKKNPFHPFSTFDTVTLSALAVGETVLAKALE-----------------AIGL 194 Query: 168 GIEHVNAHDAKADVYATLALVWLIREK 194 + AH A D T L I Sbjct: 195 EWDSQQAHGALYDAEQTAELFCRIINH 221 >gi|90108543|pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli gi|90108544|pdb|1YTA|B Chain B, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli gi|90108545|pdb|1YTA|C Chain C, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli gi|90108546|pdb|1YTA|D Chain D, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli Length = 180 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 5 NNLIWIDLEXTGLDPERDRIIEIATLVTDANLNILAE 41 >gi|238026568|ref|YP_002910799.1| oligoribonuclease [Burkholderia glumae BGR1] gi|237875762|gb|ACR28095.1| Oligoribonuclease (3'-5' exoribonuclease) [Burkholderia glumae BGR1] Length = 202 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61 + V D E G + DR + A V + +K V +D+ L +A Sbjct: 19 NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETLAKMDAWNQSTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + V EA + +I F + P + N+I D + Sbjct: 79 GRSGLIDRVRASTVSEAAAAAQIEAFLAQYVSPGKSPMCGNSICQDRRFMARWMPELERF 138 Query: 117 SYRW 120 + Sbjct: 139 FHYR 142 >gi|205355112|ref|YP_002228913.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274893|emb|CAR39959.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 181 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 42 >gi|70999440|ref|XP_754439.1| RNA exonuclease Rex2 [Aspergillus fumigatus Af293] gi|66852076|gb|EAL92401.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus Af293] gi|159127455|gb|EDP52570.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus A1163] Length = 250 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 11/129 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----DPEA 57 T+ V D E G + D Q D ++ E F D P Sbjct: 67 TDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLD-PEGFETIIHHDRSVLDSMSPWC 125 Query: 58 VFITGIT--PQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFY 111 V G T L + + + P T ++ N++ D + Y Sbjct: 126 VDTHGRTGLTAAVLASTTNSTTAAESLLAYIQRYVPHPRTALLAGNSVHADKMFLAKEPY 185 Query: 112 RNFYDSYRW 120 + + + Sbjct: 186 KAVLEWLHY 194 >gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329] Length = 214 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 62/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V R+D + ST F +P + + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ S + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201 >gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1] gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1] Length = 224 Score = 56.4 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 62/215 (28%), Gaps = 31/215 (14%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52 M F V+ D ET G + A D + A V + D + F +P + Sbjct: 22 MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 81 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 + A+ TGI A+ + + R + + I+ +N FD + Sbjct: 82 IEAAALEFTGIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN + + L + + DG Sbjct: 142 NAAVARNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201 AH A+ D T L I + ++ + Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219 >gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] Length = 194 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V V + + ++ + V I GI Sbjct: 19 NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 72 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I +F ++ +N FD Sbjct: 73 HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 113 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + Y + +L + I+ + HDA D A Sbjct: 114 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 170 Query: 184 TLALVWLIREK 194 ++ +K Sbjct: 171 CAEILLYQEKK 181 >gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6] gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6] Length = 225 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 37/220 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52 M F V+ D ET G + A D + A + +D Q E T F +P + Sbjct: 23 MAERFRGYLPVVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVEPFEGAN 82 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 + A+ TGI A+ + + R + + I+ +N FD + Sbjct: 83 IEAAALEFTGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 142 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R + S +D + Y + L A Sbjct: 143 NAAVARLDMKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 183 Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREK--KPKLFEYL 202 GI+ AH A+ D T L I + + +E Sbjct: 184 AGIDFDGREAHSARYDTEKTAELFCGIVNRWKQMGGWEDF 223 >gi|302534542|ref|ZP_07286884.1| oligoribonuclease [Streptomyces sp. C] gi|302443437|gb|EFL15253.1| oligoribonuclease [Streptomyces sp. C] Length = 200 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEA 57 M + V D E G + D + A + D + + +P D + +PD Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPDVVR 60 Query: 58 VFIT--GITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 T G+ + A + EA+ + + P + N++ D + Sbjct: 61 EMHTASGLLDELAAGTTLADAEAQVLAYVREHVKEPRKAPLCGNSVGTDRGFLSR----- 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N Sbjct: 116 --DMPALESHLHYRIVDVSSVKELARRWYPR-------------------AYFNSPPKNG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIKESIAELRYYRE 174 >gi|224586194|ref|YP_002639993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470722|gb|ACN48552.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322717301|gb|EFZ08872.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132691|gb|ADX20121.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626042|gb|EGE32387.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630269|gb|EGE36612.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 185 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 46 >gi|220934199|ref|YP_002513098.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7] gi|219995509|gb|ACL72111.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7] Length = 236 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 4/110 (3%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET G D++ V V ++ + + + D + + + GI+ Sbjct: 42 FVVIDVETTGLDLSRSELLSVGLVPVGPHGIELGGLDEIVLR-REVTRIDKDNLVVHGIS 100 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P + GV E + + T ++ ++ R + + Sbjct: 101 PTE-SAAGVDIHEALSSVLERIGK--TWLVAFHADFDRIILGRTLRKQLG 147 >gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor] gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor] Length = 505 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 26/191 (13%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V R+ ++ S +V Sbjct: 41 IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPVSAVSAASVRC 99 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + ++ + G+N +RFD + R + Sbjct: 100 NGITRDAVSGAP-PFRDVADAVYDLLN--GRVWAGHNIVRFD-----SARIREAFTEIGR 151 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S D L ++ A K+ LA G+ H + D Sbjct: 152 SPPQPKGMIDTLPLL------------TQRFGRRAGDMKMASLANYFGLG-KQRHRSLDD 198 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 199 VRMNLEVLKYC 209 >gi|163856231|ref|YP_001630529.1| oligoribonuclease [Bordetella petrii DSM 12804] gi|163259959|emb|CAP42260.1| oligoribonuclease [Bordetella petrii] Length = 181 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 13/165 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 N V D E G D +R + A V + + V D L +A+ Sbjct: 6 NRLVWLDMEMTGLDPTKERIIEVAVVVTEPDLTVVAEGPVLVVHQPDSLL---DAMDNWN 62 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 G + K + EA+ R + +F + + N I D + Sbjct: 63 KSTHGKSGLIDKVRASTLTEAQAERMLLEFLAQHVPAGKSPLCGNTISQDRRFMYAYMPE 122 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 + + D + + A+Y + + D S Sbjct: 123 LERFFHYRNLDVSTLKELARRWVPAVYKGFEKKSKHEALADIYES 167 >gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3] gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US] gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153] gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3] gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153] gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US] gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] Length = 177 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 55/195 (28%), Gaps = 28/195 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET R A V V + + D + + I Sbjct: 2 NFIAMDFETANRHPESA--CSLALVMVRNN-KIADRFYTV---INPQMPFDGRNISVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP AE +I ++ +N +FD + R Sbjct: 56 TPSDVKDAP-TMAEVWPKIKDL--YQPGMLVAAHNAKFDANVLKMSLARY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D+ Y + + KL ++ A +E + H+A +D A Sbjct: 103 ---------DIAEPHYLVIDTLKTSRLFEPDLPNHKLNTVSEALDVELWHHHNALSDSEA 153 Query: 184 TLALVWLIREKKPKL 198 ++ EK Sbjct: 154 CAGILIKQNEKMGDE 168 >gi|120553343|ref|YP_957694.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] gi|120323192|gb|ABM17507.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 201 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 49/206 (23%), Gaps = 33/206 (16%) Query: 1 MTNH---FVIYDYETF---GRDV---ALD----RPAQFAGVRVDRQWEKIESTEVFFCKP 47 M + ++ D E+ + D + R + + + F KP Sbjct: 1 MRDKSLALLVVDLESTCWEDLNPEGKRQDVDSMEIIEIGCALATRDGQLL-KSASFLVKP 59 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 +TGIT E ++++ + I + +D + Sbjct: 60 TRFPQLSDFCTALTGITQSMVDEAP-TYPEAIEALNKWLGELSDEFIWCSWGNYDRRHVE 118 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALA 166 + + Y W L + LA Sbjct: 119 AQNQQTGSRP-----------------AMSRYPHLNLKRIWRRTTGQKQKNGLANALAFH 161 Query: 167 NGIEHVNAHDAKADVYATLALVWLIR 192 + + H D + L+ + Sbjct: 162 DLTFEGSHHRGVDDARNIVRLLPFMD 187 >gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4] gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4] Length = 239 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 60/203 (29%), Gaps = 27/203 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + V + + +P + +P A+ TG Sbjct: 36 VVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEGANLEPSALAFTG 95 Query: 63 ITPQKALRDGVVEAE--FSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P LR + E E RRI + C++ +N FD + R Sbjct: 96 IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFDLAFLNAAVLRTN 155 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 S+ + L + + A + +A Sbjct: 156 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACK----------------AAGLDFDGNDA 199 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D T L I P Sbjct: 200 HSALYDTQKTAELFCYILNNYPM 222 >gi|67524821|ref|XP_660472.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4] gi|40744263|gb|EAA63439.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4] Length = 802 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TE-VFFCKPADDYLPDPEAV 58 T+ V D E G D D Q D +++ E V + + Sbjct: 615 TDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLDATGFEAVIHVPQSALDSMSQWCI 674 Query: 59 FITGIT--PQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G T Q+ V A+ I ++ P T ++ N++ D + Y Sbjct: 675 DTHGRTGLTQRVQNSTVTPEAAAADLLAYIKRYIPKPRTALLAGNSVHADKAFLACGPYA 734 Query: 113 NFYDSYRW 120 + + Sbjct: 735 AILEWLHY 742 >gi|321460150|gb|EFX71195.1| hypothetical protein DAPPUDRAFT_327373 [Daphnia pulex] Length = 215 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 24/129 (18%) Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCK--------------P 47 V +D ET G R + + ++ ++ CK Sbjct: 13 KSLVFFDLETTGLPSDHPARITEL-------NFCGVDRSQFIGCKAKKMPRVTNRLNLCI 65 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYY 105 DP A ++ + + +A I F C+I +N +FD Sbjct: 66 DPSRPIDPVATDLSKLDNANLGQQSKFDANVLNIIVSFLDRLQKLICLIAHNGTKFDFPI 125 Query: 106 SRNIFYRNF 114 + Sbjct: 126 FNAEIAQLG 134 >gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium intracellulare ATCC 13950] Length = 215 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 44/160 (27%), Gaps = 20/160 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D+ + A + D + ADD + Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVIH-ADDAALSAMGDVV 59 Query: 61 TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 T + R G++ EA I Q P T + N+I D + Sbjct: 60 T----EMHSRSGLIDEVRASAVDLATAEAMVLDYIGQHVKQPKTAPLAGNSIATDRAFIV 115 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 D+Y S L + + Sbjct: 116 R--DMPALDTYLHYRMIDVSSIKELCRRWYPRIYFGQPTK 153 >gi|145629185|ref|ZP_01784984.1| oligoribonuclease [Haemophilus influenzae 22.1-21] gi|145639128|ref|ZP_01794735.1| oligoribonuclease [Haemophilus influenzae PittII] gi|148827138|ref|YP_001291891.1| oligoribonuclease [Haemophilus influenzae PittGG] gi|166216262|sp|A5UFF2|ORN_HAEIG RecName: Full=Oligoribonuclease gi|144978688|gb|EDJ88411.1| oligoribonuclease [Haemophilus influenzae 22.1-21] gi|145271690|gb|EDK11600.1| oligoribonuclease [Haemophilus influenzae PittII] gi|148718380|gb|ABQ99507.1| oligoribonuclease [Haemophilus influenzae PittGG] gi|309750709|gb|ADO80693.1| Oligoribonuclease [Haemophilus influenzae R2866] Length = 182 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305] gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305] Length = 216 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 9/116 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D + + + +P + + +++ G Sbjct: 21 VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80 Query: 63 ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR 112 I LR V E E + + + +I +N FD + + R Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAAKR 136 >gi|224083100|ref|XP_002189554.1| PREDICTED: REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Taeniopygia guttata] Length = 232 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 7/127 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M V D E G DV D+ + A + D + D+ L Sbjct: 34 MGQRMVWVDLEMTGLDVEKDQILEMACLITDCDLNVLAEGPNLIINQPDEVLESKSEWCK 93 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + + + F P C + N++ D + + Sbjct: 94 EHHGKSGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 153 Query: 114 FYDSYRW 120 + Sbjct: 154 MRHLHYR 160 >gi|187469812|gb|AAI67080.1| Unknown (protein for IMAGE:8363520) [Rattus norvegicus] Length = 292 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 101 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 160 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 161 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 208 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 209 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 268 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 269 KNIANIMKTLAYR 281 >gi|293347578|ref|XP_001071982.2| PREDICTED: exoribonuclease 3 [Rattus norvegicus] gi|149035532|gb|EDL90213.1| similar to prion protein interacting protein 1, isoform CRA_a [Rattus norvegicus] Length = 337 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 314 KNIANIMKTLAYR 326 >gi|109730985|gb|AAI17541.1| Eri3 protein [Mus musculus] Length = 296 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 105 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 164 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 165 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 212 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 213 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 272 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 273 KNIANIMKTLAYR 285 >gi|94267095|ref|ZP_01290732.1| Exonuclease [delta proteobacterium MLMS-1] gi|94268501|ref|ZP_01291197.1| Exonuclease [delta proteobacterium MLMS-1] gi|93451582|gb|EAT02387.1| Exonuclease [delta proteobacterium MLMS-1] gi|93452187|gb|EAT02848.1| Exonuclease [delta proteobacterium MLMS-1] Length = 161 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 48/186 (25%), Gaps = 31/186 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + + V V Q P+ ++ I Sbjct: 1 MVNFAAIDFET--ANYRRESACAVGVVLV-EQGRIARRIYHLIRPPSSWFVF----THIH 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+ + R E I + + +N FD + + Sbjct: 54 GLGWEDVRRAP-SFGEIWPEIAAELA--GVEFLAAHNASFDRGVLNACCHAHGLAPPSLP 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + R + P KL D+ I N H A +D Sbjct: 111 F------VCTVQLARQRWNIRPT--------------KLSDVCRRLDIAL-NHHQADSDA 149 Query: 182 YATLAL 187 A + Sbjct: 150 EACARI 155 >gi|46447255|ref|YP_008620.1| hypothetical protein pc1621 [Candidatus Protochlamydia amoebophila UWE25] gi|46400896|emb|CAF24345.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25] Length = 193 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 12/192 (6%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPAD-DYLPDPEAVFITGI 63 + D E+ G D R + A +D R E+ + + +P + D ++ I G Sbjct: 4 IFLDIESSGLDSFHHRALEIAFKVIDVRTGEERLTYQSIVKQPLEVWEKRDLASIEINGF 63 Query: 64 TPQKA---LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T +K + VV++E + + + N FD + I + Y W Sbjct: 64 TWEKLLLGQEEAVVKSEIVQIFNDLKIQRGRAVYICQNPAFDRGFFSQIVDVYTQEKYHW 123 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179 + + + Y + + +A G+ + H+A Sbjct: 124 PYHWLDFASMYWALQFKFYTQKHE------HFPLEINLSKNTIAQHFGLPIESSPHNALN 177 Query: 180 DVYATLALVWLI 191 V + + Sbjct: 178 GVNHLILCYKTV 189 >gi|33859765|ref|NP_536717.2| ERI1 exoribonuclease 3 [Mus musculus] gi|81913994|sp|Q8C460|ERI3_MOUSE RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion interactor 1; AltName: Full=Prion protein-interacting protein gi|26350187|dbj|BAC38733.1| unnamed protein product [Mus musculus] gi|74184336|dbj|BAE25703.1| unnamed protein product [Mus musculus] gi|109733321|gb|AAI16686.1| Exoribonuclease 3 [Mus musculus] gi|123121719|emb|CAM27529.1| prion protein interacting protein 1 [Mus musculus] gi|123261242|emb|CAM23618.1| prion protein interacting protein 1 [Mus musculus] Length = 337 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 314 KNIANIMKTLAYR 326 >gi|317057849|ref|YP_004106316.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450118|gb|ADU23682.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 295 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G D Q + + D + + +P EA + ITP Sbjct: 128 IIIDTETTGLSELDDELLQVSII--DDAGNVL---YNSYLRPLYHTS-WKEAECVNNITP 181 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + E + + I + +D + G Sbjct: 182 RMVAEAPTIYDEMPK-----------------INAIIKAAKKIIGFNTGFDENFLYFSGG 224 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNAHDAKADV 181 S W +V+ + F+P +W + D L A + AH++ AD Sbjct: 225 IS-WMNKEVVDVMTMFAPIYGEWSEQYDDYKWQNLIKAADYYDYDWSSRPGEAHNSLADC 283 Query: 182 YATLALVWLI 191 YATL + I Sbjct: 284 YATLYVYNKI 293 >gi|149910187|ref|ZP_01898833.1| Oligoribonuclease [Moritella sp. PE36] gi|149806773|gb|EDM66737.1| Oligoribonuclease [Moritella sp. PE36] Length = 188 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N+ V D E G D + A + D + + V L + T Sbjct: 13 NNLVWIDLEMTGLDPEKCLIIEIATIVTDSELNILAEGPVLAIHQDKAELDKMDEWCTTH 72 Query: 63 ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 T ++ L V E E + F + N+I D + Sbjct: 73 HTNSGLVKRVLASEVTEKEAVEQTLAFLHKWVPAGKSPLCGNSIGQDRRFLVKYMTELND 132 Query: 116 DSYRW 120 + Sbjct: 133 YFHYR 137 >gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus] Length = 214 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 62/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V R+D + ST F +P + + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR + E E + I++ S + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201 >gi|66045076|ref|YP_234917.1| exonuclease [Pseudomonas syringae pv. syringae B728a] gi|63255783|gb|AAY36879.1| Exonuclease [Pseudomonas syringae pv. syringae B728a] Length = 181 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 23/193 (11%) Query: 1 MTNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M H+++ D E G VA + V++ +++ E F +PA L Sbjct: 1 MMPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHF 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +T I Q ++ + ++ S I+G+ + Sbjct: 60 CRELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWG 102 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 Y R LD + ++ L G++ H Sbjct: 103 DYDRQQLEEEWRHHHLDSALSSMPHVNLKQRFAQARHLQKPIGLNSALQLAGMQFSGQQH 162 Query: 176 DAKADVYATLALV 188 A D T L+ Sbjct: 163 RALVDARNTARLL 175 >gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 220 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET + A V V + + + +P D P+A+ I IT Sbjct: 4 VIDTETCDL---QGGIVEVASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITES 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E + + +N FD W Sbjct: 57 MVADKPWIE-EVIPHYY------GSPWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL E ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVRTP----EGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 L+ I + + + L F + ++ +A Sbjct: 146 LLIDIMNTSGWTPDDMATITGRPALLT---------------TFTFGKYRGKAVSDIADK 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + L Sbjct: 191 DPGYLRWLYNNLDKMSPELRLTLKH 215 >gi|162449255|ref|YP_001611622.1| exonuclease [Sorangium cellulosum 'So ce 56'] gi|161159837|emb|CAN91142.1| predicted exonuclease [Sorangium cellulosum 'So ce 56'] Length = 191 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 34/158 (21%), Gaps = 8/158 (5%) Query: 5 FVIYDYETF----GRDVALD-RPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58 F++ D E GR + V VD E + F L Sbjct: 8 FLVIDLEATCDEEGRIPERIMEIIEIGAVLVDGATLEPVSELATFVRPVIRPRL-TEFCT 66 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T IT E + +F + + + + Sbjct: 67 KLTTITQADVDAAP-TFPEAIAALGRFVGQREALFCSWGDYDRKQFEIDAARWGVPLPLQ 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156 L R A + + + P Sbjct: 126 GHMNIKKRFSAALGVTQRYGMASALERLGLPLHGTHHR 163 >gi|301604764|ref|XP_002932007.1| PREDICTED: ERI1 exoribonuclease 2 [Xenopus (Silurana) tropicalis] Length = 693 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 21/203 (10%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 +I D+E+ G+ +F V ++ E + +P + + Sbjct: 38 LIIIDFESTCWKDGKHSTQ-EIIEFPAVLLNVANGEIESEFHT-YVQPQEHPILSEFCTE 95 Query: 60 ITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-----Y 111 +TGI + + ++F+ I + + + F + Sbjct: 96 LTGIKQLQVDNGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSAAEHKMCAFVTWSDW 155 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + D+L+ + A + +R + LQDL + Sbjct: 156 DLGVCLLYECRRKQMKKPDILNSWIDLRATYK---LFYNRRPKGLNGALQDLGIEFS--- 209 Query: 172 VNAHDAKADVYATLALVWLIREK 194 H D T L W + Sbjct: 210 GREHSGLDDSRNTAKLAWRMIRD 232 >gi|149197758|ref|ZP_01874808.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] gi|149139328|gb|EDM27731.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] Length = 184 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 15/120 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 TN+ V D E G + D+ + A + D + I ++ D + Sbjct: 4 TNNLVWMDLEMTGLNPDNDKIIEIATLVTDSELNIIAKGPCLIIHQSDEVMNNMNDWCIK 63 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQF---FSVPNTCIIGYNNIRFDDYYSRNIF 110 +T Q V + E R+ F F + N+I D + Sbjct: 64 HHGESGLT----QAVKESTVSQEEACRQTRDFILEFCEKGRAPLCGNSIGQDRMFLTKHM 119 >gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] Length = 177 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V + ++ D + + I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I ++ +N RFD R R + Sbjct: 56 TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNSRFDTNVMRQSLARYNIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + + KL ++ A +E + H+A +D A Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALNVELWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|325114145|emb|CBZ49703.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 496 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 48/209 (22%), Gaps = 35/209 (16%) Query: 9 DYETFGRDVALDRPAQFAG----------------VRVDRQWEKIESTEVFFCKPADDYL 52 D ET G + Q V D + VF Sbjct: 257 DLETTGLCIQSCEITQIGCVPRLFRDGRWHYVNCPVLRDAEAHLWGEPHVFSAYIRIHSW 316 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 + +TGIT + G+ N++ +D Sbjct: 317 IPKKVRDLTGITKALLNKKGIPLETAL------LKWAGWAQKIANSLDYDVPIWFVAHSG 370 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW----------PSRDDGATSFKLQD 162 + +D ++R L R + P + S L Sbjct: 371 SSFDIPVLLRHETSTRTALKMFSRGCFFRHVGCEYTVDTLTLSRALPWPNVREQSHSLSL 430 Query: 163 LALANGI---EHVNAHDAKADVYATLALV 188 L + + H+A D A L+ Sbjct: 431 LYAQLTGRSRDRNDEHNAVGDSIALAELM 459 >gi|148652620|ref|YP_001279713.1| oligoribonuclease [Psychrobacter sp. PRwf-1] gi|148571704|gb|ABQ93763.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp. PRwf-1] Length = 193 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + D E G D D + A + D + VF K +D L D Sbjct: 15 KKGLIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTK 74 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + R V + + F + + N+I D + + Sbjct: 75 QHGQSGLIDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLE 134 Query: 115 YDSYRW 120 + Sbjct: 135 RFFHYR 140 >gi|77359452|ref|YP_339027.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125] gi|123587965|sp|Q3IG97|ORN_PSEHT RecName: Full=Oligoribonuclease gi|76874363|emb|CAI85584.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125] Length = 181 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 8/130 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 ++ + D E G + D+ + A V D + +++ L D Sbjct: 5 KSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSNELLDNMDEWCTT 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + EA + F + N+I D + + R Sbjct: 65 QHGKSGLTARCKASTYDEAYAVEQTIAFLKQWVPAGASPMCGNSIGQDRRFMNK-YMREL 123 Query: 115 YDSYRWSWDN 124 D + + + Sbjct: 124 EDFFHYRNLD 133 >gi|50554073|ref|XP_504445.1| YALI0E26939p [Yarrowia lipolytica] gi|49650314|emb|CAG80046.1| YALI0E26939p [Yarrowia lipolytica] Length = 182 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 9/114 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEA 57 M V D E G D D+ + + D + I+ V C Sbjct: 1 MEPPLVWIDCEMTGLDHKNDQIIEICCLLTDDNLQVIDPKGYEAVIHCPKEKLDAMSAWC 60 Query: 58 VFITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 V G + QK + E E I +F ++ N++ D + Sbjct: 61 VEHHGQSGLTQKCIESTKTMTEVEEELLAYIKRFVPRKGAGVLAGNSVHQDRVF 114 >gi|68250317|ref|YP_249429.1| oligoribonuclease [Haemophilus influenzae 86-028NP] gi|148825742|ref|YP_001290495.1| oligoribonuclease [Haemophilus influenzae PittEE] gi|81335262|sp|Q4QJM8|ORN_HAEI8 RecName: Full=Oligoribonuclease gi|166216261|sp|A5UBG1|ORN_HAEIE RecName: Full=Oligoribonuclease gi|68058516|gb|AAX88769.1| oligoribonuclease [Haemophilus influenzae 86-028NP] gi|148715902|gb|ABQ98112.1| oligoribonuclease [Haemophilus influenzae PittEE] Length = 182 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|167034808|ref|YP_001670039.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] gi|166861296|gb|ABY99703.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] Length = 183 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 52/188 (27%), Gaps = 23/188 (12%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V R+ +++ + F +P P +T Sbjct: 5 LVIDLEATTDEGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120 I+ E + ++ + + + +D + ++ DS Sbjct: 64 HISQADVDSA-APFREVWANVERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQHGLDSLLR 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + N + +G LA + H A D Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGA--------------LQLAGMHFC--GQQHRALED 166 Query: 181 VYATLALV 188 T L+ Sbjct: 167 ARNTARLL 174 >gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638] gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638] Length = 220 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 67/263 (25%), Gaps = 54/263 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET + A V V + + + +P D P+A+ I IT Sbjct: 4 VIDTETCDL---QGGIVEVASVDV-INGQIV-NPMSHLVRP--DRPISPQAMAIHRITES 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E + + +N FD W Sbjct: 57 MVADKPWIE-EVIP------NYYGSTWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL E ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMALYKSRKLNVKTP----EGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 L+ I + + + L F + ++ VA Sbjct: 146 LLIDIMNNSGWTPDDMATITGRPALLT---------------TFTFGKYRGKAVSEVADR 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDL 268 P Y + + L Sbjct: 191 DPGYLRWLYNNLDRMSPELRLTL 213 >gi|332845430|ref|XP_003315043.1| PREDICTED: ERI1 exoribonuclease 2 isoform 1 [Pan troglodytes] Length = 691 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +I+S + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|294629494|ref|ZP_06708054.1| oligoribonuclease [Streptomyces sp. e14] gi|292832827|gb|EFF91176.1| oligoribonuclease [Streptomyces sp. e14] Length = 202 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60 Query: 60 ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 Q G+ E + + + P + N++ D + Sbjct: 61 ------QMHTASGLLAELPGGTTLKDAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ + + P A N Sbjct: 113 -----LLRDMPVLEGYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 E H A AD+ ++A + RE Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174 >gi|73977199|ref|XP_850849.1| PREDICTED: similar to prion protein interacting protein 1 isoform 2 [Canis familiaris] Length = 335 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 251 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 311 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 312 KNIANIMKTLAYQ 324 >gi|19553671|ref|NP_601673.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032] gi|62391312|ref|YP_226714.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032] gi|23821913|sp|Q8NMU1|ORN_CORGL RecName: Full=Oligoribonuclease gi|21325244|dbj|BAB99866.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium glutamicum ATCC 13032] gi|41326653|emb|CAF21135.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium glutamicum ATCC 13032] Length = 219 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 10/119 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D+ + A + D + ++ L D + Sbjct: 17 DRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFVTNM 76 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 G+T ++ V E + + + N+I D + R R Sbjct: 77 HESSGLT-EQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREHMPR 134 >gi|269219723|ref|ZP_06163577.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332] gi|269210965|gb|EEZ77305.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332] Length = 214 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 21/192 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---- 56 M N V D E G D+ +D + A V D + ++ +P+D + Sbjct: 1 MNNPIVWIDCEMTGLDLNVDELVEVAVVITDSELNPVDEGIDVLIRPSDAAVEHMGDFVR 60 Query: 57 ----AVFI-----TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 A + G+T ++A + I + +G N++ D + Sbjct: 61 QMHTASGLIEEWKNGLTLEEARE------QVLAYIRRHIPEAQKAPLGGNSVGTDKAFL- 113 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 Y ++ S L + + + + D Sbjct: 114 -EKYMPDVVAHLHYRLIDVSSLKELAKRWYPRTYFAAPEKTGNHRALGDIYDSIDELHYY 172 Query: 168 GIEHVNAHDAKA 179 + A D Sbjct: 173 RDALMPAGDGLT 184 >gi|262374198|ref|ZP_06067474.1| oligoribonuclease [Acinetobacter junii SH205] gi|262310756|gb|EEY91844.1| oligoribonuclease [Acinetobacter junii SH205] Length = 184 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 11/131 (8%) Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V +D L D Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDLILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + ++ +F + + N+I D + + Sbjct: 61 EWNTKQHGQSGLIERVRRSKLSAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQFFHYR 131 >gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium kansasii ATCC 12478] Length = 215 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 12/156 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---PDPEA 57 M + V D E G ++A D+ + A + D + DD L D A Sbjct: 1 MRDELVWIDCEMTGLNIASDKLIEIAVLVTDADLNILGDGVDVVIHADDDALSSMIDVVA 60 Query: 58 VFIT--GITPQKALRDGV----VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 T G+ ++ V EA I++ P T + N+I D + Sbjct: 61 EMHTRSGL-IEEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRSFI--ARD 117 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 D++ S L + + Sbjct: 118 MPALDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153 >gi|145296472|ref|YP_001139293.1| oligoribonuclease [Corynebacterium glutamicum R] gi|166216072|sp|A4QGM5|ORN_CORGB RecName: Full=Oligoribonuclease gi|140846392|dbj|BAF55391.1| hypothetical protein [Corynebacterium glutamicum R] Length = 219 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 10/119 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D+ + A + D + ++ L D + Sbjct: 17 DRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFVTNM 76 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 G+T ++ V E + + + N+I D + R R Sbjct: 77 HESSGLT-EQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREQMPR 134 >gi|47214707|emb|CAG01060.1| unnamed protein product [Tetraodon nigroviridis] Length = 228 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 56/193 (29%), Gaps = 33/193 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V +D ET G D Q A V + P P A +TG Sbjct: 13 LVFFDLETTGLGSTCD-IIQLAAVSGGHSLN-------LYVVPR--RPLQPGAAKVTGFR 62 Query: 65 --------PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 ++ + E F + + I+G+N RFD + Sbjct: 63 VRRRRLYLHRQLVPTN-SLREVLVSFIAFLRMLHHPLIVGHNIRRFDGPLLGRVLDELDL 121 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + S G D L + + + R +F+ + L AH Sbjct: 122 RTQFESSVTGW--VDTLSLAQEL-----------LRGHNLQNFRQETLVRELLGLDYRAH 168 Query: 176 DAKADVYATLALV 188 DA DV A AL Sbjct: 169 DALQDVRALQALF 181 >gi|332536010|ref|ZP_08411688.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505] gi|332034620|gb|EGI71185.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 8/130 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 ++ + D E G + D+ + A V D + +D+ L D Sbjct: 5 KSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSDELLNGMDEWCTT 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + E + F + N+I D + + R Sbjct: 65 QHGKSGLTARCKASTFDEEYAVAQTLDFLKQWVPAGVSPMCGNSIGQDRRFMNK-YMREL 123 Query: 115 YDSYRWSWDN 124 D + + + Sbjct: 124 EDFFHYRNLD 133 >gi|290477090|ref|YP_003470002.1| oligoribonuclease [Xenorhabdus bovienii SS-2004] gi|289176435|emb|CBJ83244.1| oligoribonuclease [Xenorhabdus bovienii SS-2004] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 15/129 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 N+ + D E G + DR + A + D + + + D + Sbjct: 6 NNLIWIDLEMTGLEPERDRIIEIATIVTDSELNILAEGPVIAVYQPDEQLALMDDWNVRT 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 A + ++ + +AE + F I N++ D + Sbjct: 66 HTASGL----VERVKQSQFGDAEAEKATIAFLEQWVPAGKSPICGNSVGQDRRFLFRYMP 121 Query: 112 RNFYDSYRW 120 + Sbjct: 122 ELEKYFHYR 130 >gi|241662497|ref|YP_002980857.1| oligoribonuclease [Ralstonia pickettii 12D] gi|309781079|ref|ZP_07675817.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA] gi|240864524|gb|ACS62185.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] gi|308920145|gb|EFP65804.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA] Length = 215 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G DR + A V D + + Sbjct: 24 NNLIWLDMEMTGLSPENDRIIEVAVVVTDSELNILAE 60 >gi|113868398|ref|YP_726887.1| hypothetical protein H16_A2430 [Ralstonia eutropha H16] gi|113527174|emb|CAJ93519.1| hypothetical membrane associated protein,contains exonuclease domain [Ralstonia eutropha H16] Length = 247 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 52/205 (25%), Gaps = 32/205 (15%) Query: 10 YETFGRDVALDRPAQFAGVRVD---RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 ET G A D P + V+ R + ++ A G+T + Sbjct: 8 TETTGLTPA-DEPVSIGLLLVEVAPRAGTLLREITDYYGSQEPTVPIGEAATGTHGLTAE 66 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + + R I + ++ + + + + D W Sbjct: 67 MLRGR-RFDVDAIRAIVD-----DADVLVAHG----AEFHARMLGKVLPDIQHKRWR--- 113 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 +R + S+ A + KL L I A D A Sbjct: 114 ------CSVRQVR---------WSQYFHAPNHKLDTLCEHLRIFRPRPQVALDDCLALSR 158 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQL 211 L++ + + + + Sbjct: 159 LLFQHMGAADQATPMGFLLAESDFV 183 >gi|53805219|ref|YP_113058.1| oligoribonuclease [Methylococcus capsulatus str. Bath] gi|59798004|sp|Q60BD8|ORN_METCA RecName: Full=Oligoribonuclease gi|53758980|gb|AAU93271.1| oligoribonuclease [Methylococcus capsulatus str. Bath] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D D + A + D Q + V + L D Sbjct: 6 QNLIWIDLEMTGLDPQNDAIIEIATIVTDGQLNVLAEGPVLAIHQPESVLDRMDDWNRKQ 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ R + EAE F S N I N+I D + R Sbjct: 66 HGESGLTERVRRSTIGEAEAEHLTLGFVSEWVPPNESPICGNSICQDRRFLARCMPRLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12] gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15] gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1] gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12] gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15] gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1] Length = 177 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V V + + ++ + V I GI Sbjct: 2 NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I +F ++ +N FD Sbjct: 56 HQEDVRNAPK-FPEVWQTIQPYFQKN--LLVVAHNAAFDTKVLA---------------- 96 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + Y + +L + I+ + HDA D A Sbjct: 97 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 153 Query: 184 TLALVWLIREK 194 ++ +K Sbjct: 154 CAEILLYQEKK 164 >gi|289812558|ref|ZP_06543187.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 96 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 8/70 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 N ++ D ET G + + D + EA+ I G Sbjct: 24 NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 75 Query: 63 ITPQKALRDG 72 IT + Sbjct: 76 ITNEMVAFAP 85 >gi|330808406|ref|YP_004352868.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376514|gb|AEA67864.1| Conserved hypothetical protein; putative exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 180 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E T G + + V+R +++ + F +P L P Sbjct: 1 MPHWLVIDLEATTDEGGWPVTEMEIIEIGATLVNRDGREVDHFQ-RFVRPLRRPLLTPFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T IT E ++ + Y + + Sbjct: 60 RELTHITQANIDSA-APLTEVWPAFERWLT----------------PYQSKLESWVSWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 Y + L + ++ L G++ H Sbjct: 103 YDRKQLLQEWQHQQLHSVLGQVPHMNLKQRFAKARRLERPLGLNGALQLAGLQFCGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALEDARNTARLL 174 >gi|322499704|emb|CBZ34778.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 509 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 60/226 (26%), Gaps = 29/226 (12%) Query: 8 YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D E G D + + ++ T +P P +T Sbjct: 93 FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVQPVCGRKQGPGVEELTH 147 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT ++G+ E ++ F P I + + +W+ Sbjct: 148 ITDMMLEKEGIPFVEAWQQFLNFVQTPQPDEI--SGSEERILLLSHGGKLADVSLIKWTL 205 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANG-IEHVNAHDAKA 179 + + V D + D S+KL DL + AH A Sbjct: 206 EKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLVDLVQWLHIPPTLPAHRAGN 265 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 D T ++ LY + ++ + + P Sbjct: 266 DARMT--------------WDALYHTLLRYGDDEMAPREQLVPRFF 297 >gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] Length = 221 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 52/198 (26%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + V + + F +P + +PE++ G Sbjct: 28 VIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGANINPESLQFNG 87 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR V E + + + II +N FD + R Sbjct: 88 IDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSFIMAAAERTGVK 147 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L M DG AH Sbjct: 148 RNPFHPFGMFDTATLSGFMLGQTVLVKACQVAKIPFDGK-----------------QAHS 190 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 191 ALYDTERTTELFCYMVNH 208 >gi|209696189|ref|YP_002264119.1| oligoribonuclease [Aliivibrio salmonicida LFI1238] gi|208010142|emb|CAQ80467.1| oligoribonuclease [Aliivibrio salmonicida LFI1238] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFIT 61 + + D E G D + + A + D Q + V ++ L + T Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQSEGELAKMDDWCTNT 65 Query: 62 GITPQKALRDGVVEAEFSRRIHQ---FFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 R E + I + F I N+I D + + Sbjct: 66 HTNSGLVARVNASEHTEASAIEETIAFLEKWVPKGVSPICGNSIGQDRRFLYKHMPKLEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|157870698|ref|XP_001683899.1| hypothetical protein [Leishmania major strain Friedlin] gi|68126966|emb|CAJ05279.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 509 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 15/185 (8%) Query: 8 YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D E G D + + ++ T +P P +T Sbjct: 93 FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVRPVCGRKQGPGVEELTH 147 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT R+G+ E ++ +F P I + + +W+ Sbjct: 148 ITDMMLEREGIPFVEAWQQFLKFVQTPQPDEI--SGSEERILLLSHGGKLADVSLIKWTL 205 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANG-IEHVNAHDAKA 179 + + V D + D S+KL DL + AH A Sbjct: 206 EKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLADLVQWLHIPPTLPAHRAGN 265 Query: 180 DVYAT 184 D T Sbjct: 266 DARMT 270 >gi|321478169|gb|EFX89127.1| hypothetical protein DAPPUDRAFT_41461 [Daphnia pulex] Length = 231 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 50/202 (24%), Gaps = 13/202 (6%) Query: 1 MTNHFVIYDYETF------GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLP 53 M +++V+ DYE D +F V ++ + + +C+P + L Sbjct: 25 MFDYYVVIDYEATCDENHNNFDKNNQEIIEFPAVLLNCHTGKVEAEFQS-YCRPVINPLL 83 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + +TGIT + + ++ +G Sbjct: 84 TKYCIKLTGITQNIVDKAP-SFHDVLASFEKWLQKKK---LGSEYSFAILTDGSKDVGHF 139 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-V 172 S + +R + A L + G + Sbjct: 140 LKRQCVLSQIDIPEYCKYWINIRKSFTNFYQTNDLQYFARLANDTVLNIMIKEIGCKFQG 199 Query: 173 NAHDAKADVYATLALVWLIREK 194 H D + + + Sbjct: 200 KPHSGLDDARNIAYVAQCLLQD 221 >gi|242014597|ref|XP_002427973.1| oligoribonuclease, putative [Pediculus humanus corporis] gi|212512472|gb|EEB15235.1| oligoribonuclease, putative [Pediculus humanus corporis] Length = 196 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 49/179 (27%), Gaps = 14/179 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFIT 61 + ++ D E G + D + A + + + F D+ L E + Sbjct: 21 DRYIWIDLEMTGLNPETDTILEVACIITEPDLNPLNEGMHFVIHQNDNVLKSMNEWCLVH 80 Query: 62 G-----ITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYR 112 I+ ++ + ++ + T + N++ D + + Y Sbjct: 81 HEKSGLIS--ESRASPHSLKDVEEKLFNYIKSNTFIDGTNYLAGNSVYMDLLFLKK--YM 136 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 ++ S +L Y + R +Q+L I Sbjct: 137 PSIPTFLHYRLIDVSSLKVLCNHWYSYELKNCKKEVSHRALDDIKNSIQELKTYKNIAF 195 >gi|256832144|ref|YP_003160871.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] gi|256685675|gb|ACV08568.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] Length = 222 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%) Query: 1 MTNH-----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 MTN V D E G D+ D + A + D + ++ KP Sbjct: 1 MTNSAPTHPIVWIDCEMTGLDITQDALIEIAAIVTDSELNPLDEGIDLVIKPP 53 >gi|188991408|ref|YP_001903418.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. B100] gi|126030541|pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family With A Novel Opposingly-Shifted Helix gi|167733168|emb|CAP51366.1| Oligoribonuclease [Xanthomonas campestris pv. campestris] Length = 194 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 + + D E G D D + A + D Q + L EA+ Sbjct: 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIA---HSLETLEAMDEWN 65 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 + Q+ L V A+ + F + N+I D + R Sbjct: 66 RNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR 125 Query: 113 NFYDSYRW 120 + Sbjct: 126 LERYFHYR 133 >gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5] gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5] Length = 246 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 60/203 (29%), Gaps = 27/203 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + V + + +P + +P A+ TG Sbjct: 40 VVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEPSALAFTG 99 Query: 63 ITPQKALRDGVVEAE--FSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P LR + E E RRI + C++ +N FD + R Sbjct: 100 IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLNAAVLRTN 159 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 S+ + L + + A + +A Sbjct: 160 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACK----------------AAGLDFDGNDA 203 Query: 175 HDAKADVYATLALVWLIREKKPK 197 H A D T L I P Sbjct: 204 HSALYDTQKTAELFCYILNNYPM 226 >gi|297278520|ref|XP_001093178.2| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Macaca mulatta] Length = 335 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 251 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 311 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 312 KNIANIMKTLAYR 324 >gi|296207750|ref|XP_002750780.1| PREDICTED: ERI1 exoribonuclease 3 [Callithrix jacchus] Length = 335 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 251 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 311 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 312 KNIANIMKTLAYR 324 >gi|291399043|ref|XP_002715197.1| PREDICTED: prion protein interacting protein [Oryctolagus cuniculus] Length = 337 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 314 KNIANIMKTLAYR 326 >gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] Length = 177 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V E ++ L D + + I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMVRNN-EIVDRFYTV---INPQMLFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I ++ +N RFD R R + Sbjct: 56 TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARYNIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + + KL ++ +E + H+A +D A Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSSTLDVELWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|164420717|ref|NP_001106713.1| ERI1 exoribonuclease 3 isoform 1 [Bos taurus] gi|166989902|sp|A6QLH5|ERI3_BOVIN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion interactor 1; AltName: Full=Prion protein-interacting protein gi|151556386|gb|AAI47968.1| ERI3 protein [Bos taurus] gi|296488926|gb|DAA31039.1| ERI1 exoribonuclease 3 isoform 1 [Bos taurus] Length = 337 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 314 KNIANIMKTLAYR 326 >gi|149693719|ref|XP_001497227.1| PREDICTED: prion protein interacting protein [Equus caballus] Length = 337 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 314 KNIANIMKTLAYR 326 >gi|74136559|ref|NP_076971.1| ERI1 exoribonuclease 3 [Homo sapiens] gi|332259224|ref|XP_003278687.1| PREDICTED: ERI1 exoribonuclease 3 [Nomascus leucogenys] gi|332808745|ref|XP_513102.3| PREDICTED: ERI1 exoribonuclease 3 [Pan troglodytes] gi|172045564|sp|O43414|ERI3_HUMAN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion interactor 1; AltName: Full=Prion protein-interacting protein gi|55959494|emb|CAI12494.1| prion protein interacting protein [Homo sapiens] gi|56203068|emb|CAI23196.1| prion protein interacting protein [Homo sapiens] gi|158254566|dbj|BAF83256.1| unnamed protein product [Homo sapiens] gi|162319286|gb|AAI56813.1| Exoribonuclease 3 [synthetic construct] gi|261860912|dbj|BAI46978.1| exoribonuclease 3 [synthetic construct] Length = 337 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 314 KNIANIMKTLAYR 326 >gi|2852640|gb|AAC19158.1| unknown [Homo sapiens] Length = 397 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 206 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 265 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 266 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 313 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 314 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 373 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 374 KNIANIMKTLAYR 386 >gi|296158296|ref|ZP_06841128.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1] gi|295891632|gb|EFG71418.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1] Length = 207 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G + DR + A V + +++ V +D+ L D Sbjct: 19 NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + V EA+ + +I F SV P + N+I D + Sbjct: 79 GRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPDLERF 138 Query: 117 SYRW 120 + Sbjct: 139 FHYR 142 >gi|229847336|ref|ZP_04467438.1| oligoribonuclease [Haemophilus influenzae 7P49H1] gi|229809761|gb|EEP45485.1| oligoribonuclease [Haemophilus influenzae 7P49H1] Length = 182 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 31/127 (24%), Gaps = 7/127 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G + +R + A + D+ + V D L + Sbjct: 5 KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDGLLNKMNDWCQK 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ + E + F I N+I D + Sbjct: 65 THSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLA 124 Query: 115 YDSYRWS 121 + Sbjct: 125 DYFHYRH 131 >gi|322412690|gb|EFY03598.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 195 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + ++ +D E F + Q + V+ D ++++S + + D +TG Sbjct: 5 DTYIAFDLE-FNTVNEISHLIQLSAVKYD-NHKEVDSFDTY---VYTDVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K VE E F +IGYN + D + D Y+ Sbjct: 60 ITSDKIAAAPKVE-EVITAFKDFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ--- 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DL D + +GI + +LQ +A GI+ H++ D Sbjct: 113 ------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTAGIYESFLETDTN 171 >gi|164663451|ref|XP_001732847.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966] gi|159106750|gb|EDP45633.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966] Length = 186 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 10/126 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFITGI 63 V D E G D DR + A + D Q ++ + + L D E T Sbjct: 20 LVWIDCEMTGLDPNNDRLLEIACIVTDGQLRPVDEGVSYVIRTQPHVLQDMDEWCTTTHT 79 Query: 64 TP---QKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 L + A + + +++ D + N Sbjct: 80 NTGLIDACLDAKMSHMHQDVRAAVLAYVLDRIPEARIACLAGSSVHADKAFLVNEMPELI 139 Query: 115 YDSYRW 120 + Sbjct: 140 KHLHYR 145 >gi|332978247|gb|EGK14977.1| oligoribonuclease [Psychrobacter sp. 1501(2011)] Length = 193 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + D E G D D + A + D + VF K +D L D Sbjct: 15 KKGLIWIDLEMTGLDTMNDDIIEVATIVTDEDLNILAEGPVFAIKVSDQKLNGMDDWNTK 74 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + R V + + +F + + N+I D + + Sbjct: 75 QHGQSGLIDRVRRSTVTLEQAEKETIEFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLE 134 Query: 115 YDSYRW 120 + Sbjct: 135 RFFHYR 140 >gi|260582817|ref|ZP_05850603.1| oligoribonuclease [Haemophilus influenzae NT127] gi|260094143|gb|EEW78045.1| oligoribonuclease [Haemophilus influenzae NT127] Length = 182 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116] gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3] gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116] gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3] Length = 214 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 60/199 (30%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A ++ AH Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNREAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 183 SALYDTQQTAELFCGIVNK 201 >gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2] gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2] Length = 221 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +++D + ++ T F P + + A+ G Sbjct: 19 VVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFNG 78 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P ALR V E+ + I +F S +I +N FD + R Sbjct: 79 IDPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKIK 138 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + +D + G T +A ++ AH Sbjct: 139 ---RTPFHPFVSFDTTSLA--------------GLALGQTVLAKACIAAGIEFDNSQAHS 181 Query: 177 AKADVYATLALVWLIREK 194 A D T L I K Sbjct: 182 AVYDTERTAELFCFIVNK 199 >gi|118094519|ref|XP_422418.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 265 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 74 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 133 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + S + D Sbjct: 134 IIQGMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 181 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 182 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDC 241 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 242 KNIANIMKTLAHR 254 >gi|120610573|ref|YP_970251.1| oligoribonuclease [Acidovorax citrulli AAC00-1] gi|166215745|sp|A1TND9|ORN_ACIAC RecName: Full=Oligoribonuclease gi|120589037|gb|ABM32477.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax citrulli AAC00-1] Length = 193 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 +FV D E G D DR + A V + E VF +D L +A Sbjct: 19 NFVWLDCEMTGLDPEKDRLLEIAVVVTGPELEPRVEGPVFAIHQSDALLDGMDAWNKGTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + +K V EAE + I +F + + N+I D + + Sbjct: 79 GRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRRFLVRYMPKLEAF 138 Query: 117 SYRW 120 + Sbjct: 139 FHYR 142 >gi|74317857|ref|YP_315597.1| oligoribonuclease [Thiobacillus denitrificans ATCC 25259] gi|123611601|sp|Q3SHU1|ORN_THIDA RecName: Full=Oligoribonuclease gi|74057352|gb|AAZ97792.1| Exonuclease [Thiobacillus denitrificans ATCC 25259] Length = 182 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 21/131 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59 H + D E G DR + A V D + V P+AV Sbjct: 7 HLLWLDMEMTGLSPESDRIIELAIVVTDADLNTVAEGPVLVVH-------QPDAVMDAMD 59 Query: 60 -----ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109 G + + + E++ ++ +F P T + N+I D + Sbjct: 60 SWNRGTHGKSGLIDRVKASQLSESDAEAQMLEFVKQHVSPRTSPMCGNSICQDRRFMARH 119 Query: 110 FYRNFYDSYRW 120 + Sbjct: 120 MPELEAFFHYR 130 >gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-134-V-Col7a] gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 209 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 59/187 (31%), Gaps = 28/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + A + V + + DPE + I Sbjct: 1 MLDFVALDFET--ANKYKNSACSLAVITV-ENGQITKKAYSLIK--PPFMSFDPECIEIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P++ L + + I++ + I+ +N +FD R D Y Sbjct: 56 GIEPKEVLHE-KTFDQLWPAIYE--NHLKGKIMIAHNAKFDMNVL-----RATLDYYNIP 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D ++ A PD + KL +A G+E H A D Sbjct: 108 W----PELDYACTVKISRAVWPDLVN----------HKLNTMAAYLGVEF-KHHYALDDA 152 Query: 182 YATLALV 188 + Sbjct: 153 ETCAKVA 159 >gi|262374958|ref|ZP_06068192.1| oligoribonuclease [Acinetobacter lwoffii SH145] gi|262309971|gb|EEY91100.1| oligoribonuclease [Acinetobacter lwoffii SH145] Length = 185 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 11/131 (8%) Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V L D Sbjct: 1 MSSTADTRLIWIDLEMTGLDTDNDQIIEIATIVTDDNLNILAEGPVLAVHQPARLLNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + ++ +F + + N+I D + + Sbjct: 61 EWNTRQHGQSGLIERVRRSKLTAQDAEQQTIEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQYFHYR 131 >gi|91784777|ref|YP_559983.1| oligoribonuclease [Burkholderia xenovorans LB400] gi|122970228|sp|Q13VF8|ORN_BURXL RecName: Full=Oligoribonuclease gi|91688731|gb|ABE31931.1| Oligoribonuclease [Burkholderia xenovorans LB400] Length = 207 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G + DR + A V + +++ V +D+ L D Sbjct: 19 NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + V EA+ + +I F SV P + N+I D + Sbjct: 79 GRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPELERF 138 Query: 117 SYRW 120 + Sbjct: 139 FHYR 142 >gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5] gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5] Length = 223 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 28/208 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D + FF +P + + A+ TG Sbjct: 31 VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 90 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + I+ +N FD + R Sbjct: 91 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + DG AH Sbjct: 151 RNPFHPFSSFDTATLAGLAYGQTVLAKACQSADIDFDGR-----------------EAHS 193 Query: 177 AKADVYATLALVWLIREK--KPKLFEYL 202 A+ D T L I + + ++ Sbjct: 194 ARYDTEKTAELFCGIVNRWKQMGGWQDF 221 >gi|325119438|emb|CBZ54991.1| Oligoribonuclease, related [Neospora caninum Liverpool] Length = 342 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 12/118 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW--EKIESTEVFFC--KPADDYLPDPEAVFI 60 V D E G DV D+ + A + D Q + + K D D Sbjct: 167 IVWIDCEMTGLDVERDQIIEIAVIVTDGQCRRRIVGPHLIIHASDKLLDGM--DEWCKKT 224 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112 G + + A+ +I F S +G N++ D + R Sbjct: 225 HGNSGLTAACRQSTTTLADAEEKILDFVSRHVATTRVAPLGGNSVHVDRQFLTKQMPR 282 >gi|304396962|ref|ZP_07378842.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB] gi|308188276|ref|YP_003932407.1| oligoribonuclease [Pantoea vagans C9-1] gi|304355758|gb|EFM20125.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB] gi|308058786|gb|ADO10958.1| oligoribonuclease [Pantoea vagans C9-1] Length = 182 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 13/37 (35%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D DR + A + D + Sbjct: 7 QNLIWIDLEMTGLDPTHDRIIEIATLVTDANLNILAE 43 >gi|182419854|ref|ZP_02951094.1| exonuclease family protein [Clostridium butyricum 5521] gi|237666497|ref|ZP_04526482.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376402|gb|EDT73984.1| exonuclease family protein [Clostridium butyricum 5521] gi|237657696|gb|EEP55251.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 304 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 19/189 (10%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + ++VD+ + + + KP + +P+ IT I + G+ E Sbjct: 36 ENEIIEIGAIKVDKYMKPLGEMRE-YIKPTIFPIINPKVTEITKIDSNILEKKGITFEEA 94 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 ++ F + + + + S +G + LD I Sbjct: 95 INKLKDMFEDGD--------------VLCSWAKDDVAEIIINSNYHGYKDLNWLDSYLDI 140 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 ++ + T+ + + HDA D + T+ + I + Sbjct: 141 QEYASKILAHKKVLGLKTALDELKIRVN----EERLHDALNDAFYTVEIFKRIYNSRIIK 196 Query: 199 FEYLYDYRN 207 + D N Sbjct: 197 NHIVRDIYN 205 >gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13] gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens ATCC 13124] gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens B str. ATCC 3626] gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens CPE str. F4969] gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens NCTC 8239] gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens D str. JGS1721] gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13] gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens ATCC 13124] gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens B str. ATCC 3626] gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens CPE str. F4969] gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens D str. JGS1721] gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens NCTC 8239] Length = 204 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G Q + + VD + I F +PEA I Sbjct: 2 KLLFFDTETTGVKP--GSICQLSYILVDTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54 Query: 61 TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G + +K L +G+ + + I+ F I +N++FD + ++ Sbjct: 55 HGFSLEKLYELSEGMYFEDLYADFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111 Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + D+ ++R + ++ + T ++ + A N HD Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHD 171 Query: 177 AKADVYATLAL 187 A+ D AT Sbjct: 172 ARFDTAATYLT 182 >gi|114564478|ref|YP_751992.1| oligoribonuclease [Shewanella frigidimarina NCIMB 400] gi|122298754|sp|Q07XW1|ORN_SHEFN RecName: Full=Oligoribonuclease gi|114335771|gb|ABI73153.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +DR + A + D++ I V D+ L D Sbjct: 6 NNLIWVDLEMTGLEPDVDRVIEIATLVTDQELNIIAQGPVLAIYQTDEVLAGMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + E + + F + + N+I D + Sbjct: 66 HGESGLVDRVRASKCSEQDAIAQTIDFLAQYVPKGASPMCGNSIGQDRRFLNKYMLELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 FFHYR 130 >gi|332083162|gb|EGI88393.1| exonuclease family protein [Shigella boydii 5216-82] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D LDR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPELDRIIEIATLVTDANLNILAE 42 >gi|315055429|ref|XP_003177089.1| oligoribonuclease [Arthroderma gypseum CBS 118893] gi|311338935|gb|EFQ98137.1| oligoribonuclease [Arthroderma gypseum CBS 118893] Length = 188 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYL--PDPEAV 58 ++ V D E G D A D Q D Q +E D L + Sbjct: 7 SDPLVWIDCEMTGLDPANDHIMQVCCYITDAQLNLLEPKGFEVIVHLPQDILDRMNAWCT 66 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 G + L E + + + T ++ N++ D + Y Sbjct: 67 ATHGRSGLTAAVLSATTTAEEAANGLLAYIKQHVPKQGTALLAGNSVHADRAFLAQPPYV 126 Query: 113 NFYDSYRW 120 D + Sbjct: 127 QVLDWLHY 134 >gi|194434740|ref|ZP_03066992.1| oligoribonuclease [Shigella dysenteriae 1012] gi|194417021|gb|EDX33138.1| oligoribonuclease [Shigella dysenteriae 1012] gi|320180678|gb|EFW55605.1| 3'-to-5' oligoribonuclease (orn) [Shigella boydii ATCC 9905] gi|332083629|gb|EGI88847.1| exonuclease family protein [Shigella dysenteriae 155-74] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D LDR + A + D + Sbjct: 6 NNLIWIDLEMTGLDPELDRIIEIATLVTDANLNILAE 42 >gi|271968895|ref|YP_003343091.1| oligoribonuclease [Streptosporangium roseum DSM 43021] gi|270512070|gb|ACZ90348.1| putative oligoribonuclease; K01175 [Streptosporangium roseum DSM 43021] Length = 200 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M++ V D E G D+ D + A V D + +++ KP + L Sbjct: 1 MSDLLVWIDCEMTGLDLGRDALVEVACVVTDGELNQLDEGVDVVIKPPPEAL 52 >gi|170035826|ref|XP_001845768.1| three prime repair exonuclease 1 [Culex quinquefasciatus] gi|167878205|gb|EDS41588.1| three prime repair exonuclease 1 [Culex quinquefasciatus] Length = 325 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 19/173 (10%) Query: 4 HFVIYDYETF---GRDVALDRPAQFAGV-------RVDRQWEKIESTEVFFCKPADDYLP 53 FV +D ET G + + + + E L Sbjct: 6 SFVFFDLETTDIPGLKTPK--ITELSLIACSKLHLLQTKHGEIPRVLHKQTFCLNPQRLI 63 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFY 111 P+A ITG+ + + ++ I F TC++ +N RFD + Sbjct: 64 HPKASEITGLYNDLLENESKFDENTAQLIVLFLERLQSPTCLVAHNGNRFDFPILKKE-- 121 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 ++ + + D L + + + S + ++ L+ A Sbjct: 122 ---LEALKAHLPDATYCIDSLPLFQTLDQISTQQEKIAQENEKNELADLELTA 171 >gi|309972889|gb|ADO96090.1| Oligoribonuclease [Haemophilus influenzae R2846] Length = 182 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G + +R + A + D+ + + K D Sbjct: 5 KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 + + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIECVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|259486196|tpe|CBF83844.1| TPA: RNA exonuclease Rex2, putative (AFU_orthologue; AFUA_3G11820) [Aspergillus nidulans FGSC A4] Length = 194 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TE-VFFCKPADDYLPDPEAV 58 T+ V D E G D D Q D +++ E V + + Sbjct: 7 TDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLDATGFEAVIHVPQSALDSMSQWCI 66 Query: 59 FITGIT--PQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G T Q+ V A+ I ++ P T ++ N++ D + Y Sbjct: 67 DTHGRTGLTQRVQNSTVTPEAAAADLLAYIKRYIPKPRTALLAGNSVHADKAFLACGPYA 126 Query: 113 NFYDSYRW 120 + + Sbjct: 127 AILEWLHY 134 >gi|238897699|ref|YP_002923378.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465456|gb|ACQ67230.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 185 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D D + A + D + V +D + + + + Sbjct: 10 QNLIWIDLEMTGLDPERDSIIEIATLVTDADLNILAEGPVIQIYQSDQQIALMNDWNICV 69 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 T ++ A+ +F I N++ D + + Sbjct: 70 HTKTGLIERVKNSLFSTADAESATLEFLRKWVPEGQSPICGNSVAQDRRFLYRYMPKLEA 129 Query: 116 DSYRW 120 + Sbjct: 130 YFHYR 134 >gi|229916087|ref|YP_002884733.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sp. AT1b] gi|229467516|gb|ACQ69288.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sp. AT1b] Length = 188 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/205 (11%), Positives = 52/205 (25%), Gaps = 30/205 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + + D ET + + + + + + D + Sbjct: 1 MNHTILALDVET--ANRDSRSICSVGWSILQNGDVVETDQ-----RLVNPEEDFDMGNIR 53 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI P E ++ + ++ +N FD R + + Sbjct: 54 VHGIRPSDVWDAPA-LPEVLSSLYPILREVD--LVIAHNASFDMGALRKAIVKYDLFDF- 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + ++ G + KL +A + ++ HDA Sbjct: 110 -------PTIEYGCTVKLSRKLY----------PGLPNHKLNTMAEHLNVPFIH-HDAAE 151 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D L+ + +K Sbjct: 152 DARVCALLMRDMMQKTGITSPKELH 176 >gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3] gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3] Length = 202 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 30/179 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + + E + E +P D P + + Sbjct: 1 MKTIAI-DFET--ANEERGSACSIGLAWI-EDGEIV-RVEERLIRPK-DMRFSPFNIAVH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P EF + +F + + +N FD R F + Sbjct: 55 GIRPADVEDAP----EFPDVMEEFIDDFHGATMIAHNAAFDFSVMRASFDK--------- 101 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + L ++ WP S KL +A + V+ H+A D Sbjct: 102 YRQSYPDLSYLCSVKIARHV------WPQLA----SHKLNVIAHHLQLRFVH-HNAAED 149 >gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus amylolyticus DSM 11664] gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus amylolyticus DSM 11664] Length = 177 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 58/200 (29%), Gaps = 28/200 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V E ++ D + + I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMVRNN-EIVDRFYTV---INPQMPFDARNIEVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE +I ++ +N RFD R R + Sbjct: 56 TADDVRDAP-TMAEVWPKIKDL--YQPGMLVAAHNARFDTNVMRQSLAR---------YS 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + ++D + PD KL ++ A + + H+A +D A Sbjct: 104 ISEPHYLVIDTLATSKLLEPDL----------PDHKLDTVSEALNVNLWHHHNALSDSEA 153 Query: 184 TLALVWLIREKKPKLFEYLY 203 ++ ++ Sbjct: 154 CAEILINQDKEFGDEPIKNL 173 >gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa] gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa] Length = 231 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 29/192 (15%) Query: 5 FVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVF 59 V++D ET R +F + V R+ +++S +P D ++ Sbjct: 14 IVVFDLETT--VPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLI-RPKDLSAVALKSGR 70 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT E E + +I + G+N RFD + F + Sbjct: 71 CDGITRGAVSNAPAFE-EVADKIFSILN--GRIWAGHNIQRFDCVRIKEAFAEIGKPAPV 127 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D L V+ A + K+ LA G+ H + Sbjct: 128 -----PAGMIDSLGVL------------TERFGRRAGNMKMATLAAYFGLG-KQKHRSLD 169 Query: 180 DVYATLALVWLI 191 DV L ++ Sbjct: 170 DVRMNLEVLKHC 181 >gi|146284105|ref|YP_001174258.1| oligoribonuclease [Pseudomonas stutzeri A1501] gi|166216582|sp|A4VR15|ORN_PSEU5 RecName: Full=Oligoribonuclease gi|145572310|gb|ABP81416.1| oligoribonuclease [Pseudomonas stutzeri A1501] gi|327482422|gb|AEA85732.1| oligoribonuclease [Pseudomonas stutzeri DSM 4166] Length = 180 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D Q + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLDPDNDVIIEMATIVTDSQLNVLAEGPVIAVHQSDEVLARMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE R +F I N+I D + Sbjct: 64 QHGGSGLTQRVRESRISTAEAERLTLEFLEQWVPKGKSPICGNSICQDRRFLYRQMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 AYFHYR 129 >gi|167035943|ref|YP_001671174.1| oligoribonuclease [Pseudomonas putida GB-1] gi|166862431|gb|ABZ00839.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] Length = 180 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +DD L D Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDDVLARMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + F I N+I D + Sbjct: 64 THGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|110835017|ref|YP_693876.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2] gi|110648128|emb|CAL17604.1| nuclease, putative [Alcanivorax borkumensis SK2] Length = 173 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 57/188 (30%), Gaps = 20/188 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D A V + ++ + S++ K A +++ I + P Sbjct: 2 VAIDCETTGLDSRTAELVSIAAVVI-KEGRVL-SSQSLNVKLAAPDSLREDSICIHRLRP 59 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G E + N ++G+ +R + +D Sbjct: 60 VDLEG-GASIREALEALLALID--NRPLVGWCVAFDVAMINRYLRPLMGFDLPN------ 110 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D + + W + D + +A A + + H A+ D + Sbjct: 111 -------DTLELSALYQRKMRYW--QPDITPDLRFDAMASALQVPVIERHTARGDAVTSA 161 Query: 186 ALVWLIRE 193 + +++ Sbjct: 162 LMYLQLQK 169 >gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01] gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01] Length = 224 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D + T F +P + + A+ TG Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEQAALEFTG 91 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + E + + + I+ +N FD + R Sbjct: 92 IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GIE A Sbjct: 152 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIEFDGKEA 192 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 193 HSARYDTEKTAELFCGIVNRWKEMGGW 219 >gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 139 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 13/99 (13%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 +E + + + +N Sbjct: 57 MVADKPWIE-DVIP-----LYYGSEWYVAHNASFDRRVL 89 >gi|145641023|ref|ZP_01796604.1| oligoribonuclease [Haemophilus influenzae R3021] gi|145274184|gb|EDK14049.1| oligoribonuclease [Haemophilus influenzae 22.4-21] Length = 115 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D +R + A + D+ + Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAE 42 >gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51] gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51] Length = 224 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 33/218 (15%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52 M F V+ D ET G + A D + A V + D + F +P + Sbjct: 22 MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 81 Query: 53 PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106 + A+ TGI A+ + + R + + I+ +N FD + Sbjct: 82 IEAAALEFTGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 RN + + L + + DG Sbjct: 142 NAAVARNDVKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREK--KPKLFEYL 202 AH A+ D T L I + + Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKDLGGWRDF 222 >gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO] gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO] gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] Length = 201 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V V + + ++ + V I GI Sbjct: 26 NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 79 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I +F ++ +N FD Sbjct: 80 HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 120 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + Y + +L + I+ + HDA D A Sbjct: 121 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 177 Query: 184 TLALVWLIREK 194 ++ +K Sbjct: 178 CAEILLYQEKK 188 >gi|297160318|gb|ADI10030.1| oligoribonuclease [Streptomyces bingchenggensis BCW-1] Length = 202 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 56/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVVRPPAKALTTMPEVVR 60 Query: 60 -IT-----------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + G T + A R + I + + N++ D + Sbjct: 61 EMHTASGLLAELDGGTTLEDAQR------QVLAYIREHVPEAGKAPLCGNSVSTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ + + A N Sbjct: 113 -----LLRDMPELESYLHYRIVDVSSIKELARRWYAR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 + H A AD++ ++A + RE Sbjct: 149 SPKKNGNHRALADIHESIAELRYYRE 174 >gi|241763009|ref|ZP_04761071.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241367961|gb|EER62180.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 179 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 57/197 (28%), Gaps = 28/197 (14%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M H++ D ET G VD + + V + + PEA+ + Sbjct: 1 MREHYISVDVETSGPIPGEFSMLSLGASVVDDDGK---TFHVQIKPLNRNAV--PEALAV 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 TG++ + G A + +G N FD + F R Sbjct: 56 TGLSLETLECHGTEPAIAMENFASWLEGVRPNGIKPVFVGLNAP-FDWSFVNYYFVR--- 111 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + S G + D+ + G W + +L + H Sbjct: 112 --FCGSNPFGYTALDIKAM-----YMGATGCTWSQTTSSQMAKRLL-------PKRKGTH 157 Query: 176 DAKADVYATLALVWLIR 192 +A D L L+R Sbjct: 158 NALDDALYQAELFRLVR 174 >gi|28174986|gb|AAH21405.2| Eri3 protein [Mus musculus] Length = 264 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 73 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 132 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 133 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 180 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 181 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 240 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 241 KNIANIMKTLAYR 253 >gi|332534821|ref|ZP_08410645.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035733|gb|EGI72220.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 207 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 20/188 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++ D E G D A V +D Q K+ ++ D ++ Sbjct: 21 LQQRYLVIDLELTGLDAKQHEIVSVAWVIIDNQCIKMSKSQHL---INKDVKSLAQSPVF 77 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI+ A+ G+ ++ FS CI+ ++N D + + Sbjct: 78 HGISDD-AIAKGLSLNSILMQLSNHFSD---CILVFHNAMLDWVFLKIALKNANITI--- 130 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L + + I+ L + + H A D Sbjct: 131 ---RPKLILDTLHIEQKRLLHHSTEIK-------QDDLTLNACRTRYELPSYHCHHALTD 180 Query: 181 VYATLALV 188 AT L+ Sbjct: 181 AQATAELL 188 >gi|321470748|gb|EFX81723.1| hypothetical protein DAPPUDRAFT_92597 [Daphnia pulex] Length = 185 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N V D E G D D + A + D+ + D L Sbjct: 10 NRIVWMDLEMTGLDETKDYILEAACLITDQDLNIVAEGPNIIINQPDSILDGMGEWCKKT 69 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + + E ++ F P C + N+I D + + Sbjct: 70 HGESGLTEACRNSNISVEEAQEQLVDFIGRYTNPGECPLAGNSIGEDKRFLYKYMPKLIN 129 Query: 116 DSYRW 120 + Sbjct: 130 HLHYR 134 >gi|326318064|ref|YP_004235736.1| exonuclease RNase T and DNA polymerase III [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374900|gb|ADX47169.1| Exonuclease RNase T and DNA polymerase III [Acidovorax avenae subsp. avenae ATCC 19860] Length = 193 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 +FV D E G D DR + A V + E VF +D L +A Sbjct: 19 NFVWLDCEMTGLDPEKDRLLEIAVVVTGPELEPRVEGPVFAIHQSDALLDGMDAWNKGTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + +K V EAE + I +F + + N+I D + + Sbjct: 79 GRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRRFLVRYMPKLEAF 138 Query: 117 SYRW 120 + Sbjct: 139 FHYR 142 >gi|33593655|ref|NP_881299.1| oligoribonuclease [Bordetella pertussis Tohama I] gi|33596303|ref|NP_883946.1| oligoribonuclease [Bordetella parapertussis 12822] gi|33602411|ref|NP_889971.1| oligoribonuclease [Bordetella bronchiseptica RB50] gi|41017436|sp|Q7VVH7|ORN_BORPE RecName: Full=Oligoribonuclease gi|41017438|sp|Q7W9T4|ORN_BORPA RecName: Full=Oligoribonuclease gi|41017439|sp|Q7WGX3|ORN_BORBR RecName: Full=Oligoribonuclease gi|33563728|emb|CAE42963.1| oligoribonuclease [Bordetella pertussis Tohama I] gi|33566072|emb|CAE36971.1| oligoribonuclease [Bordetella parapertussis] gi|33576850|emb|CAE33930.1| oligoribonuclease [Bordetella bronchiseptica RB50] gi|332383059|gb|AEE67906.1| oligoribonuclease [Bordetella pertussis CS] Length = 181 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 N V D E G D +R + A V + + V D L +A+ Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQPDSLL---DAMDNWN 62 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 G + +K + EA+ + + +F + + N I D + Sbjct: 63 KSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRFMYAYMPN 122 Query: 113 NFYDSYRW 120 + Sbjct: 123 LERFFHYR 130 >gi|262184889|ref|ZP_06044310.1| oligoribonuclease [Corynebacterium aurimucosum ATCC 700975] Length = 214 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A V D + ++ ++ L D + Sbjct: 13 DRLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDEGIDIVVHATEEELAQMDDFVTEM 72 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 + ++ + AE + + + + N+I D + R R Sbjct: 73 HAKSGLDKEIRESAITIAEAEEAVLKLVEKHCDANHPAPLAGNSIATDRTFIREYMPR 130 >gi|254384702|ref|ZP_05000040.1| oligoribonuclease [Streptomyces sp. Mg1] gi|194343585|gb|EDX24551.1| oligoribonuclease [Streptomyces sp. Mg1] Length = 200 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPD-PE 56 M + V D E G + D + A + D + + +P D + +PD Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDTALETMPDVVR 60 Query: 57 AVFI-TGITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 A+ +G+ + A + EA+ + + P + N++ D + Sbjct: 61 AMHTASGLLDELAGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGF-------L 113 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N Sbjct: 114 LRDMAALEGYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPPKNG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIKESIAELRYYRE 174 >gi|66822265|ref|XP_644487.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] gi|66822817|ref|XP_644763.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] gi|122057700|sp|Q556Y2|ORN_DICDI RecName: Full=Probable oligoribonuclease; AltName: Full=RNA exonuclease 2 homolog gi|60472610|gb|EAL70561.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] gi|60472946|gb|EAL70895.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] Length = 190 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 19/122 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--------STEVFFCKPADDYLP 53 + V D E G D++ D + A V D + IE ++ D + Sbjct: 16 SKRMVWVDLEMTGLDISKDVILEMAIVITDAELNVIEKGPNLVIHRSDEVLKNMNDWCIE 75 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 G + + + E + + +F C + N + D + Sbjct: 76 H------HGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGNTVHEDRRFLLK 129 Query: 109 IF 110 Sbjct: 130 EM 131 >gi|283458223|ref|YP_003362841.1| oligoribonuclease [Rothia mucilaginosa DY-18] gi|283134256|dbj|BAI65021.1| oligoribonuclease [Rothia mucilaginosa DY-18] Length = 228 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 31/128 (24%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------ 49 + V D E G DV D + + D + S F KP D Sbjct: 5 SERIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDESPAGALENMND 64 Query: 50 ---------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100 LPD E G++ A + R I ++ V +G N++ Sbjct: 65 FVRSMHEASGLLPDIE----HGVSMDYAQE------QVLRYIKKYVPVAGKAQLGGNSVG 114 Query: 101 FDDYYSRN 108 D + Sbjct: 115 MDKRFLER 122 >gi|255326016|ref|ZP_05367104.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296] gi|255296907|gb|EET76236.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 31/128 (24%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------ 49 + V D E G DV D + + D + S F KP D Sbjct: 5 SERIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDESPAGALENMND 64 Query: 50 ---------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100 LPD E G++ A + R I ++ V +G N++ Sbjct: 65 FVRSMHEASGLLPDIE----HGVSMDYAQE------QVLRYIKKYVPVAGKAQLGGNSVG 114 Query: 101 FDDYYSRN 108 D + Sbjct: 115 MDKRFLER 122 >gi|227513634|ref|ZP_03943683.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577] gi|227083150|gb|EEI18462.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577] Length = 177 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 28/200 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + A V V T F+ + + + GI Sbjct: 2 NFAAMDFET--ANAKRASACSLALVIVRNNQV----THEFYSLINPETDFSWRNINVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q E I F+ ++ +N FD+ + R Sbjct: 56 HKQDVANAP-TFPELWDHIAPLFTANK--LVVAHNASFDNSVLKRTLERY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D++ + + KL + IE + H+A D A Sbjct: 103 ---------DLLLPHFLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVA 153 Query: 184 TLALVWLIREKKPKLFEYLY 203 ++ +++ + Sbjct: 154 CANILLTQQQQFGNSVLRNF 173 >gi|85706653|ref|ZP_01037745.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius sp. 217] gi|85668711|gb|EAQ23580.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius sp. 217] Length = 193 Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 8/98 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 D E G + V +D + + + P I Sbjct: 1 MKRMWAVDVEGNGATPP--EIIELGIVEMD-GLRLTGR--IKHWQFRPELEITPIVSRIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI 99 GIT + + I + I+G+N Sbjct: 56 GITNEDVADAP-PFDDVVDDILLWLE--GAPIVGHNVR 90 >gi|300741385|ref|ZP_07071406.1| oligoribonuclease [Rothia dentocariosa M567] gi|300380570|gb|EFJ77132.1| oligoribonuclease [Rothia dentocariosa M567] Length = 211 Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 52/211 (24%), Gaps = 53/211 (25%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60 + V D E G D+ D + + D + KP A+ Sbjct: 5 SERIVWIDCEMTGLDLTQDALIEIGVLVTDSDLNILGEGVELVIKP--GSEAPAGALENM 62 Query: 61 ------------------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 G++ +A + + ++ V +G N++ D Sbjct: 63 NSYVRNMHESSGLLEDLEHGVSMHEAQEA------VLKYVKKYVPVAGKAQLGGNSVGMD 116 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + D+ D+M+ ++ D Sbjct: 117 KRFLER---------------------DMPDLMKHLHYRVIDVSTIKELAARW-----YP 150 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193 A N H A D+ ++ + R Sbjct: 151 AARHNAPVKTGNHRALGDIKDSIDELKYYRR 181 >gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ D+ET + P V V + E +E KP + P + I GI Sbjct: 3 YIAIDFET--ANEKRSSPCSIGIVVV-KNSEVVEKIHYLI-KPKEMRFM-PINIGIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P + E +RI +F + +N FD R + + + Sbjct: 58 PGMVENEPE-FDEIWKRIKGYFDNG---FVIAHNASFDISVLRRTMELYNIEPVSFKY-- 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + M+ F P KL + G E + HDA AD A Sbjct: 112 -------ICTMKLSKNFYPQIENS----------KLNTVNRFLGYEFDH-HDALADALAC 153 Query: 185 LALV 188 ++ Sbjct: 154 SNIL 157 >gi|149409288|ref|XP_001508438.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 683 Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 14/197 (7%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 38 LIVIDFESTCWNDGKHHYSQEIIEFPAVLLNTSTGEIESEFQCYVQPQEHPILSEFCIEL 97 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCII--GYNNIRFDDYYSRNIFYRNF 114 TGI + +GV ++F + I N + + + ++ Sbjct: 98 TGIKQAQV-DEGVPLKICLSQFCKWIQMIQQKKKIIFAPGISNPATSEVKSCAFVTWSDW 156 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 ++ + +++ + + R S LQDL L Sbjct: 157 DLGVCLEYECKRKQLRKPEILNSWIDLRATYKLFYMRKPKGLSGALQDLGLKFS---GQE 213 Query: 175 HDAKADVYATLALVWLI 191 H D T L W + Sbjct: 214 HSGLDDSRNTAHLAWRM 230 >gi|157103173|ref|XP_001647854.1| three prime repair exonuclease 1, putative [Aedes aegypti] gi|108884686|gb|EAT48911.1| three prime repair exonuclease 1, putative [Aedes aegypti] Length = 320 Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 12/117 (10%) Query: 4 HFVIYDYETFGR-DVALDRPAQFAGV------RVDRQWEKIESTE--VFFCKPADDYLPD 54 FV +D ET + + + + + +D + ++ FC + Sbjct: 7 SFVFFDLETTDLIGIKTPKITEISLIACSRKHLLDTKRGELPRVLHKQTFC-LNPQRMIH 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNI 109 P A TG+ + + ++ I F TC++ +N RFD + Sbjct: 66 PRASETTGLYNDLLEDESKFDENTAQLIVLFLRRLQAPTCLVAHNGNRFDFVILKKE 122 >gi|257069110|ref|YP_003155365.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810] gi|256559928|gb|ACU85775.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810] Length = 634 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 9/114 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D D + A + D + KP + L DP V + Sbjct: 11 DRIIWVDCEMTGLDKQRDALVEIAVLVTDADLNILGDGVDVVIKPPAEALEGMDPFVVNM 70 Query: 61 TGIT--PQKALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 ++ ++ G+ E + Q+ P + N++ D + Sbjct: 71 HTVSGLIEEL-DGGMTLQEAQARCLAYVQQYCPEPGKAPLAGNSVGTDRVFLDR 123 >gi|89075319|ref|ZP_01161741.1| oligoribonuclease [Photobacterium sp. SKA34] gi|90581256|ref|ZP_01237053.1| oligoribonuclease [Vibrio angustum S14] gi|89048868|gb|EAR54437.1| oligoribonuclease [Photobacterium sp. SKA34] gi|90437495|gb|EAS62689.1| oligoribonuclease [Vibrio angustum S14] Length = 181 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 11/127 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + A + D Q + V + L D Sbjct: 6 KNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAEGPVLAIHQPEAELDKMDDWCTNT 65 Query: 61 TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 T ++ + V E + + F I N+I D + Sbjct: 66 H--TNSGLVERIRKSTVTEQQAVAQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EQYFHYR 130 >gi|332188896|ref|ZP_08390601.1| exonuclease family protein [Sphingomonas sp. S17] gi|332011078|gb|EGI53178.1| exonuclease family protein [Sphingomonas sp. S17] Length = 253 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 46/188 (24%), Gaps = 30/188 (15%) Query: 7 IYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G+ + V + + E P I I Sbjct: 11 VIDLETTGQAPPTHGVCEIGWQDVALGKNGRWELEGEGGSLLVNPGRPIPPITQAIHHIL 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + +RR+ P + + F+ + ++ Sbjct: 71 DEQVADAPWWH-DVARRVLD--PWPRRLALAAHRADFEQQFCTPAMTQS----------- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDAKADV 181 I + WP ++ L+ G+ H H A D Sbjct: 117 ----------ADWICTWKCALRLWP-DSPSFSNQVLRYWRKPEGLVHERGLPIHRAFPDA 165 Query: 182 YATLALVW 189 Y T + Sbjct: 166 YVTAHHLR 173 >gi|226952875|ref|ZP_03823339.1| oligoribonuclease [Acinetobacter sp. ATCC 27244] gi|226836386|gb|EEH68769.1| oligoribonuclease [Acinetobacter sp. ATCC 27244] Length = 186 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 11/131 (8%) Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V +D L D Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDVILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + ++ +F + + N+I D + + Sbjct: 61 EWNTKQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQFFHYR 131 >gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + +R + E T F +P + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|171779207|ref|ZP_02920178.1| hypothetical protein STRINF_01055 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282263|gb|EDT47690.1| hypothetical protein STRINF_01055 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 195 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F + Q + V+ R ++++ + + D +TGIT Sbjct: 7 YISFDLE-FNTVAEISHIIQVSAVKF-RDGVEVDNFDTY---VYTDIPLQSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +K + + F T ++GYN ++ D + D Y Sbjct: 62 SEKIAKAPK-LDKVLADFKDFVGK--TALVGYNALKSDLPL-LAENDLDLTDFY------ 111 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + DL D + +GI + KL +A GI + H++ D T Sbjct: 112 ---KVDLYDEAYERRSSDLNGIA---------NLKLTSVADFLGIS-GHGHNSLEDARMT 158 Query: 185 LALVWLIREKKPK 197 + E Sbjct: 159 ALVYEKFMEFDEN 171 >gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c] gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c] Length = 211 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + D + T + P + + A+ G Sbjct: 18 VIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGANLEKAALEFNG 77 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P ALR + E E + + + + ++ +N FD + R+ Sbjct: 78 IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + L + A + AH Sbjct: 138 RTPFHPFVSFDTTTLSGLALGQTVLVKACQ-----------------AANISFDQSEAHS 180 Query: 177 AKADVYATLALVWLIREK 194 A D T L I K Sbjct: 181 ALYDTQKTAELYCYIVNK 198 >gi|148698603|gb|EDL30550.1| prion protein interacting protein 1, isoform CRA_a [Mus musculus] Length = 259 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 68 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 175 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 176 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 236 KNIANIMKTLAYR 248 >gi|331646932|ref|ZP_08348031.1| putative DNA polymerase III epsilon subunit [Escherichia coli M605] gi|331044249|gb|EGI16380.1| putative DNA polymerase III epsilon subunit [Escherichia coli M605] Length = 206 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 11/108 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + D + + F + +A + GI+ Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKSTVAIGAQAAAVHGISE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 Q + + +R++ +I +N + + Sbjct: 157 QALCGAPL-WTDVARQLRHAI--GGRPVIIFNARFDIRILKQTAAAHS 201 >gi|299146645|ref|ZP_07039713.1| exonuclease [Bacteroides sp. 3_1_23] gi|298517136|gb|EFI41017.1| exonuclease [Bacteroides sp. 3_1_23] Length = 198 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V + +P +Y + Sbjct: 1 MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E I + + +N FD+ R ++ Y + Sbjct: 56 GLTYDDTMEADE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + R + +L +A G N H A AD Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153 Query: 182 YATLALV 188 A + Sbjct: 154 EACAQIA 160 >gi|238063163|ref|ZP_04607872.1| oligoribonuclease [Micromonospora sp. ATCC 39149] gi|237884974|gb|EEP73802.1| oligoribonuclease [Micromonospora sp. ATCC 39149] Length = 198 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 10/151 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI-TG 62 V D E G D+ D + A + D + +V PE V G Sbjct: 7 LVWIDCEMTGLDLGRDALIEVAALVTDPDLNVLGDGVDVVIHADEAALEAMPEIVRTMHG 66 Query: 63 IT--PQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + ++ R V AE + P + N+I D + R D Sbjct: 67 KSGLTEEVRRSAVTLAEAEDLVLDYVTSHVKDPRAAPLCGNSIATDRGFISRDMPR--LD 124 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 ++ S L + + Sbjct: 125 AHLHYRMIDVSSIKELCRRWYPRVYFGQPRK 155 >gi|308235255|ref|ZP_07665992.1| exonuclease [Gardnerella vaginalis ATCC 14018] gi|311115068|ref|YP_003986289.1| hypothetical protein HMPREF0421_21184 [Gardnerella vaginalis ATCC 14019] gi|310946562|gb|ADP39266.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 256 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 16/195 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + D A + + K + + +P+A + G T + Sbjct: 32 FDTETTGAILGEDSICS-ATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTDEF 90 Query: 68 ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW-D 123 + E E N ++ YN + ++ + Sbjct: 91 LQENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKKWDLTSLNNRPNST 150 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVY 182 + ++D + A L G+E + HDA AD Sbjct: 151 INDGEILVVDPLVIDRAV----------SKRTGKRTLTHTTQFYGVEPIGDFHDATADTV 200 Query: 183 ATLALVWLIREKKPK 197 A + L+ I E Sbjct: 201 AAVDLIKPISELHED 215 >gi|319760221|ref|YP_004124159.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF] gi|318038935|gb|ADV33485.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF] Length = 182 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37 M + + D E G + DR + A + D + + Sbjct: 1 MDKNLIWIDLEMTGLNPEKDRIIEIATLITDSELNIL 37 >gi|213692117|ref|YP_002322703.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523578|gb|ACJ52325.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458233|dbj|BAJ68854.1| hypothetical protein BLIJ_1267 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 185 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 4/59 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITG 62 + D ET G D D + + + ++ + P + G Sbjct: 13 LLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHW---EGKPSEFIQSMHG 68 >gi|254429651|ref|ZP_05043358.1| exonuclease superfamily [Alcanivorax sp. DG881] gi|196195820|gb|EDX90779.1| exonuclease superfamily [Alcanivorax sp. DG881] Length = 215 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 20/190 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D ET G D A V + + + S++ K + + I + P Sbjct: 46 VAIDCETTGLDSRTAELVSIAAVVI-KDGRVL-SSQGLDVKLMPPDSLKEDTIRIHRLRP 103 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 G + + N ++G+ +R + +D Sbjct: 104 VDLEG-GESVRDALDALLALV--GNRPLVGWCVAFDVAMINRYLRPLMGFDLPN------ 154 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D++ + W + D + +A A + + H A+ D + Sbjct: 155 -------DIIELSALYQKKMRYW--QPDVTPDLRFDAMASALQVPVMERHTARGDAVTSA 205 Query: 186 ALVWLIREKK 195 + +++ Sbjct: 206 LMYLQLQKSY 215 >gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa Japonica Group] Length = 267 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 54/191 (28%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V R+ + S +P D + +V Sbjct: 30 IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVVVGSYATL-VRPGDLGVVSAASVRC 87 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + ++ G+N +RFD R F Sbjct: 88 NGITRDAVAAAPA-FRDVADAVYSVL--HGRVWAGHNIVRFDLARIREAFAEIGRPPPE- 143 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ +H + D Sbjct: 144 ----PKGMIDTLPLL------------TQKFGRRAGDMKMASLANYFGLGR-QSHRSLDD 186 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 187 VRMNLEVLKYC 197 >gi|104780960|ref|YP_607458.1| exonuclease [Pseudomonas entomophila L48] gi|95109947|emb|CAK14652.1| putative exonuclease [Pseudomonas entomophila L48] Length = 183 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 51/188 (27%), Gaps = 23/188 (12%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V R+ +++ + F +P P +T Sbjct: 5 LVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120 I+ +E + ++ + + + +D + + DS Sbjct: 64 HISQADVDNA-TPFSEVWGQFERWLVNHQAQLQAWVSWGDYDRKQLLQEWQVHHVDSLLL 122 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + ++ +L L + H A D Sbjct: 123 KLPH-----------INLKQRFAKARHLQRPAGLNSALQLAGLQFS-----GQQHRALED 166 Query: 181 VYATLALV 188 T L+ Sbjct: 167 ARNTARLL 174 >gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group] gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa Japonica Group] Length = 493 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 54/191 (28%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V R+ + S +P D + +V Sbjct: 30 IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVVVGSYATL-VRPGDLGVVSAASVRC 87 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + ++ G+N +RFD R F Sbjct: 88 NGITRDAVAAAPA-FRDVADAVYSVL--HGRVWAGHNIVRFDLARIREAFAEIGRPPPE- 143 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ +H + D Sbjct: 144 ----PKGMIDTLPLL------------TQKFGRRAGDMKMASLANYFGLGR-QSHRSLDD 186 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 187 VRMNLEVLKYC 197 >gi|149189379|ref|ZP_01867664.1| hypothetical protein VSAK1_25975 [Vibrio shilonii AK1] gi|148836737|gb|EDL53689.1| hypothetical protein VSAK1_25975 [Vibrio shilonii AK1] Length = 176 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 21/151 (13%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M + V+ +D E T G + +D +++ ++ KP Sbjct: 1 MNYNRVVCFDLEMCCWNVDGVGTTG------EIIEVGLAEIDLVKQEVVKRAQYYVKPET 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G A + + + F PN + DD Sbjct: 55 DKV-SLFCTELTGITPRKVEKQGRPLASVIQSMVKNFGGPNKIYASW---GRDDIILLEE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 + + N + + + + ++ Sbjct: 111 CQSKGIEMPFKEFVNLATLYRIQNRLKDKRI 141 >gi|144900367|emb|CAM77231.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 189 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%) Query: 2 TNHFVIYDYE-TF--GRDVA-------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 VIYD E T G Q VR+D+ + +++ ++ +P + Sbjct: 1 MRPVVIYDLEYTSWAGAQARNWSGAGEYREIVQIGAVRLDQDFRELDCLDIL-VRPRRNP 59 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85 +TGI+ V +R+ F Sbjct: 60 RLSDYFTQLTGISQAMLNESAVEAEGALQRLLDF 93 >gi|45185903|ref|NP_983619.1| ACR217Cp [Ashbya gossypii ATCC 10895] gi|44981693|gb|AAS51443.1| ACR217Cp [Ashbya gossypii ATCC 10895] Length = 225 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 16/118 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--------KPADDYLPD 54 V D E G D D + + D ++ Sbjct: 31 KPIVWIDCEMTGLDHTSDHIIEVCCLVTDGHLNPVDDGYESVVHASAAALAAMDAWCTQH 90 Query: 55 PEAVFITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 A +T +AL EAE I + P ++ N++ D + Sbjct: 91 HGASGLT----ARALACPKSAAQVEAELLAYIRRLVPRPGRAVLAGNSVHMDRLFMLR 144 >gi|301167502|emb|CBW27085.1| putative exonuclease [Bacteriovorax marinus SJ] Length = 963 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 31/217 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G D + D+ ++ + D +TGI + Sbjct: 10 VIDIETTGIDPSYDQIIDVGYLQF-EGTTLVRKYSSL---VQYDGKLSQFIKKLTGIDSK 65 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + S + F G++ I + + R+F + D+G+ Sbjct: 66 MLINAP-SWQVVSPEVMDVF--------GHHLIAHNAEFE-----RSFLSDHFARIDDGS 111 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 R D + + P +S KL++ I H D L Sbjct: 112 GRESYEDSLYFLSLLFPKM----------SSLKLENFICDWKIAEHEEHRGFQDSLDLLK 161 Query: 187 ---LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220 + + +L L K L + Sbjct: 162 VLLIAVATVRRDVELNATLGALFKKYNLTDYWYYKFF 198 >gi|300715033|ref|YP_003739836.1| Oligoribonuclease [Erwinia billingiae Eb661] gi|299060869|emb|CAX57976.1| Oligoribonuclease [Erwinia billingiae Eb661] Length = 181 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 13/36 (36%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D DR + A + D + Sbjct: 7 NLIWIDLEMTGLDPEQDRIIEIATLVTDADLNILAE 42 >gi|296112880|ref|YP_003626818.1| oligoribonuclease [Moraxella catarrhalis RH4] gi|295920574|gb|ADG60925.1| oligoribonuclease [Moraxella catarrhalis RH4] gi|326561112|gb|EGE11477.1| oligoribonuclease [Moraxella catarrhalis 7169] gi|326564455|gb|EGE14682.1| oligoribonuclease [Moraxella catarrhalis 103P14B1] gi|326564568|gb|EGE14793.1| oligoribonuclease [Moraxella catarrhalis 12P80B1] gi|326564778|gb|EGE14990.1| oligoribonuclease [Moraxella catarrhalis 46P47B1] gi|326567572|gb|EGE17687.1| oligoribonuclease [Moraxella catarrhalis BC1] gi|326569420|gb|EGE19480.1| oligoribonuclease [Moraxella catarrhalis BC8] gi|326571382|gb|EGE21397.1| oligoribonuclease [Moraxella catarrhalis BC7] gi|326575336|gb|EGE25264.1| oligoribonuclease [Moraxella catarrhalis CO72] gi|326576579|gb|EGE26486.1| oligoribonuclease [Moraxella catarrhalis 101P30B1] gi|326577403|gb|EGE27287.1| oligoribonuclease [Moraxella catarrhalis O35E] Length = 195 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + D E G D D + A + D + + V K +D L D Sbjct: 17 KKALIWIDLEMTGLDTQQDDIIEIATIVTDDELNILAEGPVLAIKVSDVVLNRMDDWNKN 76 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + R + A+ + +F S + N+I D + + Sbjct: 77 QHGQSGLIDRVRRSTITLADAEAQTIEFLSKWVDAGISPMCGNSICQDRRFLARQMPKLE 136 Query: 115 YDSYRW 120 + Sbjct: 137 RYFHYR 142 >gi|293372511|ref|ZP_06618893.1| putative DNA polymerase III subunit epsilon [Bacteroides ovatus SD CMC 3f] gi|292632320|gb|EFF50916.1| putative DNA polymerase III subunit epsilon [Bacteroides ovatus SD CMC 3f] Length = 198 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V + +P +Y + Sbjct: 1 MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E I + + +N FD+ R ++ Y + Sbjct: 56 GLTYDDTMEADE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + R + +L +A G N H A AD Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153 Query: 182 YATLALV 188 A + Sbjct: 154 EACAQIA 160 >gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens C str. JGS1495] gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens C str. JGS1495] Length = 204 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G Q + + VD + I F +PEA I Sbjct: 2 KLLFFDTETTGVKP--GSICQLSYILVDTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54 Query: 61 TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G + +K L +G+ + + I+ F I +N++FD + ++ Sbjct: 55 HGFSLEKLYELSEGMHFEDLYADFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111 Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + D+ ++R + ++ + T ++ + A N HD Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHD 171 Query: 177 AKADVYATLAL 187 A+ D AT Sbjct: 172 ARFDTAATYLT 182 >gi|322835471|ref|YP_004215497.1| exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] gi|321170672|gb|ADW76370.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] Length = 220 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 51/188 (27%), Gaps = 38/188 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G + A V + + + D +A+ I IT Sbjct: 4 VIDTETCGL---QGGVVEVASVDI-EDGKIVNPMSDL---VRPDRPISHQAMAIHKITEA 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E R H + +N FD + Sbjct: 57 MVADKPWIE-EIIPRYH------GSQYYVAHNASFDQRM------------------LPD 91 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 D + ++ P S S KL ++ H A D Y T A Sbjct: 92 MPGDWICTVKLSRRLWPGIK--YSNMALYKSLKLDVATP----ADLHHHRALFDCYITAA 145 Query: 187 LVWLIREK 194 L+ I ++ Sbjct: 146 LLIRIMDE 153 >gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15] Length = 208 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 57/210 (27%), Gaps = 35/210 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYL 52 M+ F V+ D ET G + D + A V +D T V P + Sbjct: 1 MSRRFRGFLPVVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGAN 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYS 106 + A+ TGI P R+ V E E I ++ +N FD + Sbjct: 61 LEQSALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFI 120 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 R N + D + L Sbjct: 121 FAAALRADI------RRNPFHPFSTFDTATLAGLAYGHTV-------------LAQACKL 161 Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194 GI N AH A D T L I + Sbjct: 162 AGIPFSNKEAHSAAYDAEKTADLFCGIVNR 191 >gi|262280955|ref|ZP_06058738.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202] gi|262257855|gb|EEY76590.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202] Length = 188 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%) Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V D L D Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDNLNVLAEGPVLAVHQPDRILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + + +F + N+I D + + Sbjct: 61 EWNTRQHGQSGLVERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQYFHYR 131 >gi|297563874|ref|YP_003682847.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848323|gb|ADH70341.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 277 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 12/145 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET RD A VDR+ + + P +P +AV + GI+ ++ Sbjct: 60 FDTETSSRDPDTAFLVSAA--LVDREGK----ARTWLVDPGPREIP-ADAVAVHGISTER 112 Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 A +G E I Q + ++ +N +D R+ Sbjct: 113 ARAEGRPAGECLEEIGQALADQLSSGQGLVVFNAP-YDLRVLSGEMRRHGLTPLAERLSG 171 Query: 125 G-NSRWDLLDVMRAIYAFSPDGIQW 148 D L + R + + Sbjct: 172 PLAPVVDPLVIDRGVEPYRRGKRNL 196 >gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4] gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4] Length = 214 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 59/199 (29%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D ST F +P + + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR + E E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A ++ AH Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNREAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 183 SALYDTQQTAELFCGIVNK 201 >gi|261326769|emb|CBH09742.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 397 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 33/194 (17%) Query: 8 YDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +D E G D +F + +P++ PE +T Sbjct: 90 FDLEFTGPPVFGPDGPTED-IMEFGFYSPAH-----DKVFSCLVRPSNGRCVSPEVTTLT 143 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT----------CIIGYNNIRFDDYYSRNIFY 111 IT + DG+ + ++ F + P ++ + D + Sbjct: 144 HITQKMLEEDGLPFRDAWAKVLDFLNTPEPQELPGAEKRLLVLSHGGKLADVSLIKWTLE 203 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IE 170 + + D ++R + P D ++ L DL Sbjct: 204 ASDMELPSNIIFG-----DTFHLIRDAHRRRPVT-----LDKHPPTWGLSDLVQWLRIPP 253 Query: 171 HVNAHDAKADVYAT 184 + AH A D T Sbjct: 254 TLPAHRAGNDAKMT 267 >gi|254516802|ref|ZP_05128860.1| oligoribonuclease [gamma proteobacterium NOR5-3] gi|219674307|gb|EED30675.1| oligoribonuclease [gamma proteobacterium NOR5-3] Length = 184 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G DR + A + D + V +D L D Sbjct: 5 QNLVWVDLEMTGLVPETDRVIEIATIVTDSDLNTLAEGPVIAIHQSDATLAAMDEWNTTH 64 Query: 61 TGITP--QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + + E E +R +F + N+I D + Sbjct: 65 HGSSGLCDRVRASTIDEQEAARLTIEFLKDWVPAGASPMCGNSICQDRRFMARHLPELER 124 Query: 116 DSYRW 120 + Sbjct: 125 YFHYR 129 >gi|332224715|ref|XP_003261514.1| PREDICTED: ERI1 exoribonuclease 2 [Nomascus leucogenys] Length = 689 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKSCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|297305033|ref|XP_001083188.2| PREDICTED: three prime repair exonuclease 2-like [Macaca mulatta] Length = 278 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ + C Sbjct: 50 ETFVFLDLEATGLPSMDPEIAELSLFAVHRSSLENLERDESGAPVLPRVLDKLTLCMC-- 107 Query: 48 ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 + +A ITG++ + + + G + R + F S C++ +N +D Sbjct: 108 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRMLQAFLSRQAGPICLVAHNGFDYD 165 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R R + D L +R + G + G + L Sbjct: 166 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 216 Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190 L E AH A+ DV+ L + Sbjct: 217 LFHRYFQAEPSAAHSAEGDVHTLLLIFLH 245 >gi|53728767|ref|ZP_00135217.2| COG1949: Oligoribonuclease (3'->5' exoribonuclease) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208604|ref|YP_001053829.1| oligoribonuclease [Actinobacillus pleuropneumoniae L20] gi|165976560|ref|YP_001652153.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150461|ref|YP_001968986.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250117|ref|ZP_07336319.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253291|ref|ZP_07339440.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246049|ref|ZP_07528131.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248157|ref|ZP_07530185.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250390|ref|ZP_07532338.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252772|ref|ZP_07534663.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255031|ref|ZP_07536849.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257187|ref|ZP_07538959.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259467|ref|ZP_07541192.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261616|ref|ZP_07543284.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263805|ref|ZP_07545411.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166215747|sp|A3N1D8|ORN_ACTP2 RecName: Full=Oligoribonuclease gi|126097396|gb|ABN74224.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876661|gb|ABY69709.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915592|gb|ACE61844.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647973|gb|EFL78180.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651180|gb|EFL81334.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852984|gb|EFM85207.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855334|gb|EFM87509.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857600|gb|EFM89708.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859804|gb|EFM91826.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861904|gb|EFM93880.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864349|gb|EFM96260.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866403|gb|EFM98266.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868739|gb|EFN00548.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870926|gb|EFN02664.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 184 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 9/127 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D +R + A + D+ + V ++D L + Sbjct: 7 QNLIWIDLEMTGLDPEKERIIEVATIVTDKDLNILAEGPVLTVHQSNDLLNKMSDWCIKT 66 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ ++ + + E + F I N++ D + Sbjct: 67 HTENGL-IERVKQSKLTERAVELQTIDFLKQWVPKGASPICGNSVAQDKRFLYKYMPDLA 125 Query: 115 YDSYRWS 121 + Sbjct: 126 DYFHYRH 132 >gi|294649278|ref|ZP_06726713.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194] gi|292824831|gb|EFF83599.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194] Length = 186 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 11/131 (8%) Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V +D L D Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDVILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + ++ +F + + N+I D + + Sbjct: 61 EWNTKQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQFFHYR 131 >gi|301787433|ref|XP_002929126.1| PREDICTED: three prime repair exonuclease 2-like [Ailuropoda melanoleuca] Length = 236 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 59/208 (28%), Gaps = 32/208 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ C Sbjct: 8 ETFVFLDLEATGLPSIDPEVAEISLFAVHRSSLENPDQDESGAPVLPRVLDKLT--LCM- 64 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103 + + +A ITG++ R + R + F S C++ +N +D Sbjct: 65 SPERPFTAKASEITGLSSDSLARCRKAGFDNAVVRTLEAFLSRQEGPICLVAHNGFDYDF 124 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 R + D L +R++ G + G + L L Sbjct: 125 PLLCTELRRLGAHLPPDT-----ICLDTLPALRSLDRAHSHGTR----AQGCKGYSLGSL 175 Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190 E AH A+ DV+ L + Sbjct: 176 FRRYFQAEPSAAHSAEGDVHTLLMVFLH 203 >gi|294793582|ref|ZP_06758719.1| putative exonuclease family protein [Veillonella sp. 3_1_44] gi|294455152|gb|EFG23524.1| putative exonuclease family protein [Veillonella sp. 3_1_44] Length = 327 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 32/218 (14%) Query: 4 HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++++D E + Q V+++ + + I+ +F KP Sbjct: 2 NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMFI-KPQYLT 60 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 +TGIT + GV + + + + D R Sbjct: 61 RMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILRENLM 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + ++ + + + ++DL EH Sbjct: 117 LHKMKALSYDQ-------------WVDAQMIYSYQRYGTSQQYSVAHAMEDL--NISTEH 161 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 ++AH+A D T + + + L L + N Sbjct: 162 LSAHNALHDAVFTAHICQTLDIAQGILHYDLIRKESSN 199 >gi|281347637|gb|EFB23221.1| hypothetical protein PANDA_019230 [Ailuropoda melanoleuca] Length = 248 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 59/208 (28%), Gaps = 32/208 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47 FV D E G A+ + V D ++ C Sbjct: 20 ETFVFLDLEATGLPSIDPEVAEISLFAVHRSSLENPDQDESGAPVLPRVLDKLT--LCM- 76 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103 + + +A ITG++ R + R + F S C++ +N +D Sbjct: 77 SPERPFTAKASEITGLSSDSLARCRKAGFDNAVVRTLEAFLSRQEGPICLVAHNGFDYDF 136 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 R + D L +R++ G + G + L L Sbjct: 137 PLLCTELRRLGAHLPPDT-----ICLDTLPALRSLDRAHSHGTR----AQGCKGYSLGSL 187 Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190 E AH A+ DV+ L + Sbjct: 188 FRRYFQAEPSAAHSAEGDVHTLLMVFLH 215 >gi|227833883|ref|YP_002835590.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC 700975] gi|227454899|gb|ACP33652.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC 700975] Length = 210 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A V D + ++ ++ L D + Sbjct: 9 DRLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDEGIDIVVHATEEELAQMDDFVTEM 68 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 + ++ + AE + + + + N+I D + R R Sbjct: 69 HAKSGLDKEIRESAITIAEAEEAVLKLVEKHCDANHPAPLAGNSIATDRTFIREYMPR 126 >gi|323498389|ref|ZP_08103386.1| oligoribonuclease [Vibrio sinaloensis DSM 21326] gi|323316531|gb|EGA69545.1| oligoribonuclease [Vibrio sinaloensis DSM 21326] Length = 181 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + A + D + + V +D L D Sbjct: 6 QNLIWMDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQSDAELAKMDEWCTTT 65 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ + V E + R+ +F I N+I D + Sbjct: 66 HTGSGL-VARVKASQVTEQDAIRQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELE 124 Query: 115 YDSYRW 120 + Sbjct: 125 EYFHYR 130 >gi|294791718|ref|ZP_06756866.1| putative exonuclease family protein [Veillonella sp. 6_1_27] gi|294456948|gb|EFG25310.1| putative exonuclease family protein [Veillonella sp. 6_1_27] Length = 327 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 64/218 (29%), Gaps = 32/218 (14%) Query: 4 HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++++D E + Q V+++ + + I+ +F KP Sbjct: 2 NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMFI-KPQYLT 60 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 +TGIT + GV + + + + D R Sbjct: 61 RMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILRENLM 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + ++ + + + +++L EH Sbjct: 117 LHKMKALSYDQ-------------WVDAQMIYSYQRYGTNQQYSVAHAMENL--NISTEH 161 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 ++AH+A D T + + + L L + N Sbjct: 162 LSAHNALHDAVFTAHICQSLDIAQGILHYDLIRKESSN 199 >gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type) [Ruminococcus sp. 18P13] Length = 176 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 34/192 (17%) Query: 2 TNHFVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++++D ET + + DR + ++ + + + + D Sbjct: 1 MAVYIVFDVET--PNRSNDRMSAIGISAIK---DNKIVANYFSL---VDPETHFDYFNTK 52 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGI K AE ++I S ++ +N R Y Sbjct: 53 LTGIDADKVKGAP-NFAELWKKIDPIMSK--GILVAHNA------VFNMSVLRACLRDYG 103 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 SW L ++R PD L + GI + H A + Sbjct: 104 ISWKPTAKY---LCMVRIGRRVLPDM-----------KHNLNVMCDHYGIALDH-HQADS 148 Query: 180 DVYATLALVWLI 191 D +A ++ Sbjct: 149 DSHACAEILLRY 160 >gi|163749340|ref|ZP_02156589.1| oligoribonuclease [Shewanella benthica KT99] gi|161331059|gb|EDQ01985.1| oligoribonuclease [Shewanella benthica KT99] Length = 181 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G D D+ + A + D++ + V D+ L D Sbjct: 6 NNLIWVDLEMTGLDPETDKVIEIATIVTDKELNILAEGPVIAIFQTDEQLATMDEWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ E + +F S + N+I D + + Sbjct: 66 HGESGLVERVRSSQYSEDDAIAMTIEFVSQYVPQGISPMCGNSIGQDRRFLNKYMPKLED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|15641389|ref|NP_231021.1| hypothetical protein VC1377 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588011|ref|ZP_01677763.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728525|ref|ZP_01681548.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675170|ref|YP_001216938.1| hypothetical protein VC0395_A0992 [Vibrio cholerae O395] gi|153212725|ref|ZP_01948382.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153817774|ref|ZP_01970441.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821312|ref|ZP_01973979.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153825269|ref|ZP_01977936.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153828771|ref|ZP_01981438.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|183179375|ref|ZP_02957586.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227081548|ref|YP_002810099.1| hypothetical protein VCM66_1332 [Vibrio cholerae M66-2] gi|229505042|ref|ZP_04394552.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286] gi|229511288|ref|ZP_04400767.1| hypothetical protein VCE_002695 [Vibrio cholerae B33] gi|229515749|ref|ZP_04405208.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21] gi|229518406|ref|ZP_04407850.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9] gi|229521489|ref|ZP_04410908.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80] gi|229529547|ref|ZP_04418937.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)] gi|229608046|ref|YP_002878694.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236] gi|254225334|ref|ZP_04918946.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254286171|ref|ZP_04961131.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254848499|ref|ZP_05237849.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297578962|ref|ZP_06940890.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298498539|ref|ZP_07008346.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655872|gb|AAF94535.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547752|gb|EAX57843.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629189|gb|EAX61629.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124116375|gb|EAY35195.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|125622175|gb|EAZ50497.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126511712|gb|EAZ74306.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126521130|gb|EAZ78353.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146317053|gb|ABQ21592.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148875724|gb|EDL73859.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149741097|gb|EDM55156.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150423840|gb|EDN15781.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|183012786|gb|EDT88086.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227009436|gb|ACP05648.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227013292|gb|ACP09502.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229333321|gb|EEN98807.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)] gi|229341587|gb|EEO06590.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80] gi|229345121|gb|EEO10095.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9] gi|229347518|gb|EEO12478.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21] gi|229351253|gb|EEO16194.1| hypothetical protein VCE_002695 [Vibrio cholerae B33] gi|229357265|gb|EEO22182.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286] gi|229370701|gb|ACQ61124.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236] gi|254844204|gb|EET22618.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297536556|gb|EFH75389.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297542872|gb|EFH78922.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327484047|gb|AEA78454.1| hypothetical protein VCLMA_A1213 [Vibrio cholerae LMA3894-4] Length = 176 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 21/151 (13%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M + V+ +D E T G + +D +I +F KP Sbjct: 1 MNYNRVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEK 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G AE + + + F N + DD N Sbjct: 55 DEI-SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASW---GRDDLILLNE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 + N + + + ++ Sbjct: 111 CREKGLSVPFQEFLNLATLYRIQHRLKDKRI 141 >gi|73977201|ref|XP_862517.1| PREDICTED: similar to prion protein interacting protein 1 isoform 4 [Canis familiaris] gi|301781887|ref|XP_002926358.1| PREDICTED: ERI1 exoribonuclease 3-like isoform 1 [Ailuropoda melanoleuca] Length = 259 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 68 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 175 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 176 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 236 KNIANIMKTLAYQ 248 >gi|323700913|gb|ADY00066.1| hypothetical protein [Escherichia coli] Length = 282 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 46/190 (24%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G + D I F + + +A + GI Sbjct: 105 LFLDTETTGLG-NTAEALEIG--LTDAAGRVI-----FETRLKPTVAIEAQAAAVHGIDE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + ++ I N FD + + + Sbjct: 157 PALSGAP-SWPDVALQLRHAIGDRPVIIF---NAPFDTRILKQTAAAHGDPA-------- 204 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + A + + + T + A AH A AD T Sbjct: 205 ----DWLGELTVYCAMELAAGYFGATNRYGTISLASAASQAALAWEGEAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor] gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor] Length = 319 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 32/194 (16%) Query: 2 TNHFVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV 58 V +D ET A R +F + V R+ ++ S + L +V Sbjct: 8 MREIVFFDVETTAPTPA-GRWWLLEFGAILVCPRKLVEVASYDTL---IRPGDL----SV 59 Query: 59 FITG-ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T + +A+ + + +I + G+N RFD R + Sbjct: 60 AVTKRFSDVEAIASAPPFKDVADKIFEILD--GRVWAGHNIQRFD-----CPRIREAFAD 112 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 D L+V+ A + K+ LA GI H + Sbjct: 113 IGRPAPEPAGVIDSLNVLAADFGRRA------------GDLKMATLATYFGIG-KQKHRS 159 Query: 178 KADVYATLALVWLI 191 D L ++ Sbjct: 160 LDDARMNLEVLKHC 173 >gi|126330776|ref|XP_001373310.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1 [Monodelphis domestica] Length = 432 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+E G +F V ++ +IE T + +P + + + Sbjct: 213 ICVIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 272 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT R + R + ++ + + + + + R Sbjct: 273 TGITQDMVDRA-ATFPQVLRNVVEWMKLKELGTTYKYSILTDGSWDMSKFLNIQCQISRL 331 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y S+ W N + + V R + + DG L D Sbjct: 332 RYPSFAKKWINIRKSYGNFYKVPRNQTKLTIMLEKLGMSYDGRPHSGLDD 381 >gi|297278522|ref|XP_002801563.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Macaca mulatta] gi|119627449|gb|EAX07044.1| prion protein interacting protein, isoform CRA_c [Homo sapiens] gi|194387402|dbj|BAG60065.1| unnamed protein product [Homo sapiens] Length = 259 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 68 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 175 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 176 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 236 KNIANIMKTLAYR 248 >gi|330444995|ref|ZP_08308649.1| oligoribonuclease monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493113|dbj|GAA03146.1| oligoribonuclease monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 181 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 11/127 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + A + D Q + V +++ L D Sbjct: 6 KNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAEGPVLAIHQSEEELAKMDDWCTNT 65 Query: 61 TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 T + + V E + + F I N+I D + Sbjct: 66 H--TNSGLVDRIRKSTVTEQQAVAQTIAFLEQWVPKGVSPICGNSIGQDRRFLYKHMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EQYFHYR 130 >gi|327264247|ref|XP_003216926.1| PREDICTED: three prime repair exonuclease 2-like [Anolis carolinensis] Length = 227 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 56/207 (27%), Gaps = 40/207 (19%) Query: 3 NHFVIYDYETFGRDVALDRPAQFA--GV-------------RVDRQW--EKIESTEVFFC 45 FV D ET G R A+ V ++ I+ Sbjct: 8 QTFVFLDIETTGLPRDWPRMAELCLFAVHRRSLLLSLPNDALTPQELLPRIIDK---LTL 64 Query: 46 KPADDYLPDPEAVFITGITPQKALR--DGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRF 101 P A ITG++ Q + + + F C++ +N + F Sbjct: 65 CIDPQKPFTPGAEEITGLSNQNLEENCKQDLNSAVVEALRGFLCRQAGPVCLVAHNGLGF 124 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D R D L +RA+ + G Q + Sbjct: 125 DFPLLHTELQRVG-----TKLSLDMGCLDTLLALRALVKGAHGGYQLGNMY--------- 170 Query: 162 DLALANGIEHVNAHDAKADVYATLALV 188 G + V +H A+ DV L + Sbjct: 171 --RYFYGQDPVRSHSAEGDVITLLLVF 195 >gi|295677244|ref|YP_003605768.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1002] gi|295437087|gb|ADG16257.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1002] Length = 203 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G + DR + A V + +++ V +D+ L D Sbjct: 19 NLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAKMDEWNQNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111 G + + V EA+ + +I +F P + N+I D + + Sbjct: 79 GRSGLIDRVKVSTVSEADATAQIREFLGQYVPPGKSPMCGNSICQDRRFMARWMPDLESF 138 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW ++ A D ++ L Sbjct: 139 FHYRNLDVSTLKELCRRWQPVIYKGFQKRAMHTALADIHESIDELKYYREHFL 191 >gi|331015388|gb|EGH95444.1| hypothetical protein PLA106_05467 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 186 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 57/198 (28%), Gaps = 28/198 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D E G E + + +++ P A+ +T Sbjct: 5 KEIFVSVDIEASGPIPGKYSMLSIGACLTT---NPAEQFSCYLKPISKEFV--PAALEVT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYD 116 G++ K ++G+ AE + + +G+N F ++ Sbjct: 60 GLSLDKLRKEGLEPAEAMSQFKAWVESLAGADQSVVFVGFNASFD------WSFVNYYFH 113 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 Y G + D+ + + S + ++ E HD Sbjct: 114 QYLGENPFGIAALDIKSMFFGTAQCT------------WKSTRSSEIEKVVSPETSGNHD 161 Query: 177 AKADVYATLALVWLIREK 194 A D L LIREK Sbjct: 162 ALDDAVYQAELFNLIREK 179 >gi|310641105|ref|YP_003945863.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] gi|309246055|gb|ADO55622.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] Length = 177 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 5/132 (3%) Query: 4 HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++I+D E + + V+V+ E I + F KP + + Sbjct: 2 NYIIFDLEATCWENDRTRQNEIIEIGAVKVNVNLEIIGEFQTFI-KPKLNPQLSDFCKSL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I+ Q + + ++ + + ++ + R Sbjct: 61 TSISQQDIDMATY-FPQAIYKFQEWIGKEPYYLCSWGFYDKSQLKKDCELHKIRTEWIRN 119 Query: 121 SWDNGNSRWDLL 132 + L+ Sbjct: 120 HISIKHQHGKLI 131 >gi|220912933|ref|YP_002488242.1| oligoribonuclease [Arthrobacter chlorophenolicus A6] gi|219859811|gb|ACL40153.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 208 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 17/118 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V D E G D+ D + A + D + + KP D + Sbjct: 6 ERIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGEGVDVVIKPDD-----AAVAQMND 60 Query: 63 ITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 + G+ EA I ++ P +G N++ D + Sbjct: 61 FVRDMHTKSGLLKELPSGKTMAEAEAAVMEYIAEWVPEPRKAPLGGNSVGTDRVFLSR 118 >gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens E str. JGS1987] gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens E str. JGS1987] Length = 204 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 17/191 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G Q + + VD + I F +PEA I Sbjct: 2 KLLFFDTETTGVKP--GSICQLSYILVDTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54 Query: 61 TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G + +K L +G+ + + I+ F I +N++FD + ++ Sbjct: 55 HGFSLEKLYELSEGMYFEDLYANFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111 Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + D+ ++R + ++ + T ++ A N HD Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISKTANKYFQGSGNYHD 171 Query: 177 AKADVYATLAL 187 A+ D AT Sbjct: 172 ARFDTAATYLT 182 >gi|331000795|ref|ZP_08324441.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859] gi|329570323|gb|EGG52056.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859] Length = 204 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 9/163 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 N+ + D E G + ++R + A V D Q I V L + ++ Sbjct: 29 NNLIWMDLEMTGLEPQINRILEMAAVITDPQLNVIAEGPVVAIHQDASILSNMDSWNTAT 88 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ + L V E E ++ FFS + N+I D + R Sbjct: 89 HTRSGLVN-RCLESKVTEDEAAQIFIDFFSKYVPAGKSPLCGNSIGQDRRFMARWTPRLE 147 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 + + D + + + + + + D S Sbjct: 148 QFFHYRNLDVSSFKECVKRWAPEVMKKYQKTSRHEALSDIYDS 190 >gi|290998255|ref|XP_002681696.1| predicted protein [Naegleria gruberi] gi|284095321|gb|EFC48952.1| predicted protein [Naegleria gruberi] Length = 185 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 20/133 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------ 55 + V D E G D+ D + A + D I + +D L + Sbjct: 7 QDPIVWVDMEMTGLDIDSDHILEIAVIITDGNLNIIAQLDSLIVHQSDSVLDNMNDWCKQ 66 Query: 56 --------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 AV + + Q+ + + + + N++ D + + Sbjct: 67 HHGDSGLTAAVRKSSFSIQQVEDT------VLDFVKHYVASERLAPLAGNSVYCDRLFMK 120 Query: 108 NIFYRNFYDSYRW 120 R + Sbjct: 121 KEMKRLDEYLHYR 133 >gi|285018424|ref|YP_003376135.1| oligoribonuclease [Xanthomonas albilineans GPE PC73] gi|283473642|emb|CBA16145.1| probable oligoribonuclease protein [Xanthomonas albilineans] Length = 190 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 + + D E G D D + A V D Q + F L EA+ Sbjct: 9 DRLIWIDLEMTGLDTERDSIIEIATVVTDAQLNVLAEGPEFAIA---HPLQTLEAMDEWN 65 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 + Q+ L V A+ + F + + N+I D + R Sbjct: 66 RNQHRQSGLWQRVLDSQVGLAQAEAQTMAFLTQWCKPGASPMCGNSICQDRRFLHRQMPR 125 Query: 113 NFYDSYRW 120 + Sbjct: 126 LERFFHYR 133 >gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 222 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 28/121 (23%), Gaps = 10/121 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62 + D ET G A DR F V +D S + P A + G Sbjct: 22 LLAVDVETTGLG-AEDRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAVHG 80 Query: 63 ITPQKALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + + ++ +N FD + F Sbjct: 81 YDDWLLRHQDPARGHLDAVAALLA-----GADLVVAHNAAFDLGFLAREFRAAGRPDPAR 135 Query: 121 S 121 Sbjct: 136 P 136 >gi|332845434|ref|XP_003315045.1| PREDICTED: ERI1 exoribonuclease 2 isoform 3 [Pan troglodytes] Length = 328 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +I+S + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora viridis DSM 43017] gi|256586713|gb|ACU97846.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora viridis DSM 43017] Length = 202 Score = 55.6 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 MT+ V D E G D+A D + A + D + + D+ L + P+ V Sbjct: 1 MTDRLVWIDCEMTGLDLAKDALIEIAVLVTDAELNVLGDGVDLVIHADDEALANMPDVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + G+T ++ R + E I + P T + N+I D + Sbjct: 61 EMHARSGLT-EEVRRSTMTLEEAERRALAYIREHVPEPKTAPLAGNSIATDRGFI--ARD 117 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 DSY S L + Sbjct: 118 MPTLDSYLHYRMVDVSSIKELIRRWYPRIYY 148 >gi|260556115|ref|ZP_05828334.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606] gi|260410170|gb|EEX03469.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606] Length = 163 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 13/132 (9%) Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M++ + D E G D D+ + A + D + V D + + Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIH-QPDRILNAM 59 Query: 57 ---AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 G + ++ R + + + +F + N+I D + Sbjct: 60 DEWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHR 119 Query: 109 IFYRNFYDSYRW 120 + + Sbjct: 120 LMPELEQYFHYR 131 >gi|213162324|ref|ZP_03348034.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 73 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 7/69 (10%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALRDGVVE 75 +E Sbjct: 57 MVADKPWIE 65 >gi|289209008|ref|YP_003461074.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] gi|288944639|gb|ADC72338.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] Length = 188 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D DR + A + D++ + Sbjct: 6 ENLIWIDLEMTGLDPQNDRIIEVATIVTDKELNILAE 42 >gi|313889801|ref|ZP_07823443.1| DNA polymerase III, epsilon subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313121846|gb|EFR44943.1| DNA polymerase III, epsilon subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 195 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 32/196 (16%) Query: 4 HFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +++ +D E + D Q + V++ E++++ + F D +T Sbjct: 6 NYIAFDLE---FNTVNDVSHLIQLSAVKM-ANHEEVDNFDSF---VYTDVPLQSFINGLT 58 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT + R + + F +IGYN+ + D + F Sbjct: 59 GITADQIARAPKIN-QVLEDFKVFVGDH--ALIGYNSQKSDLPILADNGLDLF------- 108 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 G + DL D + +GI T+ KL +A GI+ H++ D Sbjct: 109 ---GQYKVDLYDEAFERRSSDLNGI---------TNLKLTTVARFLGIK-GKGHNSLEDA 155 Query: 182 YATLALVWLIREKKPK 197 T + E Sbjct: 156 RMTARIYETFLEFDDN 171 >gi|292669904|ref|ZP_06603330.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648701|gb|EFF66673.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 219 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 29/200 (14%) Query: 6 VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D E + VR++ +E+ + + + C + + Sbjct: 4 IVVDLEMNPVSKEYREVRRKLNGEIIEIGAVRLNENYEQEDEFQCYVC--PEYGMVKKHI 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT +K FS H F + Y+ D R R Sbjct: 62 TELTGITQEKVEGHPA----FSDSFHSFVAWIGAAETKIYSWSMSDIKQLRKEC-RLKLP 116 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + +W + R + + + A L + + H Sbjct: 117 DFDVNWLDT----------RWVDLQQEFDDRLGLHNSLALKHALGAMGRRF---EGSQHS 163 Query: 177 AKADVYATLALVWLIREKKP 196 A AD T A++ L+++ Sbjct: 164 ALADAVNTSAVLALMQDDAK 183 >gi|251794793|ref|YP_003009524.1| exonuclease RNase T and DNA polymerase III [Paenibacillus sp. JDR-2] gi|247542419|gb|ACS99437.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus sp. JDR-2] Length = 264 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 21/193 (10%) Query: 5 FVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++I D E GR A D + VR++ ++ + KP + T Sbjct: 3 YIILDIEFNGRKFASDLPMEVIEIGAVRLNADLQQTDIFSSLI-KPVYFSKLNSFIKKKT 61 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI ++ + ++ + D++ S Sbjct: 62 GIPQEEIDIAPK-FPRVIGEFINWLDRGEPFMLFTWGGEDLKRIVYDTRMHKLDDAFWLS 120 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D D+++ + LA N + NAH A D Sbjct: 121 -------MDTFDLLKGYLRYKNITNDVSVE---------AALADLNLVFEGNAHRALDDA 164 Query: 182 YATLALVWLIREK 194 T + I E Sbjct: 165 IMTADVFRAIFEH 177 >gi|322391860|ref|ZP_08065325.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC 700780] gi|321145340|gb|EFX40736.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC 700780] Length = 196 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 28/193 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F + Q + V + E++ + + + D +TGIT Sbjct: 7 YISFDLE-FNKHQEKTHLIQVSAVHF-KDGEEVGAFDSY---VYTDVPLKSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + VE E ++ +F N ++GYN + D + Sbjct: 62 SETLKDAPKVE-EVLQKFQEFI--GNLPLVGYNAAKSDL-------------PILQEYGL 105 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L+D+ ++ + S G + KLQ +A G + +H++ D T Sbjct: 106 DYREQYLVDL------YNEALERRSSDLHGIANLKLQTVASFLGFK-GQSHNSLEDARMT 158 Query: 185 LALVWLIREKKPK 197 + E Sbjct: 159 AQVYEAFLESDES 171 >gi|88703626|ref|ZP_01101342.1| Exonuclease family [Congregibacter litoralis KT71] gi|88702340|gb|EAQ99443.1| Exonuclease family [Congregibacter litoralis KT71] Length = 221 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 20/184 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F++ D E G D VRV + S + + ++ I + Sbjct: 41 FLVCDAEMSGLDPRQAELLSLGWVRVSGLEIALGSARHLLIRNRESV---GQSATIHQLR 97 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + G + + + ++ ++N D + F Sbjct: 98 DCELRDAG----DVKEGLEALLAAAGGRVLVFHNAALDTAFLDYAAKAVFGAPLL----- 148 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +D + +Q R G +L G+ NAH+A D AT Sbjct: 149 ----LPTIDTL----LLEKRLLQRQERPIGQGDLRLGACRERYGLTTHNAHNALGDAMAT 200 Query: 185 LALV 188 L+ Sbjct: 201 AELL 204 >gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933] gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502] gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501] gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410] gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408] gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO] gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68] gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6] gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF] gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039] gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162] gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071] gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980] gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636] gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679] gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317] gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933] gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502] gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501] gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410] gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408] gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68] gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6] gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF] gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071] gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636] gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679] gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317] gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039] gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162] gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980] Length = 177 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET A V V + + ++ + V I GI Sbjct: 2 NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I +F ++ +N FD Sbjct: 56 HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 96 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + Y + +L + I+ + HDA D A Sbjct: 97 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 153 Query: 184 TLALVWLIREK 194 ++ +K Sbjct: 154 CAEILLYQEKK 164 >gi|163816457|ref|ZP_02207821.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759] gi|158448157|gb|EDP25152.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759] Length = 232 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 24/192 (12%) Query: 6 VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D E D + + V ++ ++E+I + ++ + KP + + Sbjct: 13 IVVDLEMNWLDFKYENERKISTNEVIEIGAVTMNEKFEEIGAFKM-YVKPQFNEKVVKKV 71 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGIT K V A+ ++ ++ Y D+ R Sbjct: 72 EKLTGITMDKLQDSPV-FADAFDAFIKWCISFGEEVVMYGWSDSDELQLRREMKLKNIPW 130 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 DV + + ++ L GI+ HD Sbjct: 131 KE-------------DVDKVFRQWHDFQKEFSDLVGIGRIITLSQAVDYAGIDFAGQKHD 177 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 178 ACCDARNTAYLL 189 >gi|117920025|ref|YP_869217.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] gi|117612357|gb|ABK47811.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] Length = 228 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 44/180 (24%), Gaps = 20/180 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D E G + D+ V ++ + + + ++ I GI Sbjct: 42 LIAMDLEMTGLNPLQDQILSIGLVPIENGAIPLMGAQQKLVQIQGSV---GQSATIHGIL 98 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 +E + F + ++ ++ D + + + Sbjct: 99 DNHLTEAVTIEEAMAW----FVAQTRGHVLVAHHSPLDCRFLQQDILS------IYHQAI 148 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + S +L G+ AH A D A Sbjct: 149 VLPAIDTL-------LLEKHRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTDALAC 201 >gi|229523521|ref|ZP_04412926.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis VL426] gi|229337102|gb|EEO02119.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis VL426] Length = 176 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 21/151 (13%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M + V+ +D E T G + +D +I +F KP Sbjct: 1 MNYNRVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEK 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G AE + + + F N + DD N Sbjct: 55 DEI-SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASW---GRDDLILLNE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 + N + + + ++ Sbjct: 111 CQEKGLSVPFQEFLNLATLYRIQHRLKDKRI 141 >gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219] gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219] Length = 186 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 53/212 (25%), Gaps = 31/212 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V D ET + V E+ A+ + + Sbjct: 1 MTRVVAVDVET--ASSDHRSMCAIG-LSVLENGVLEEAFYSLIKPAANANHFEYFNTKVH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E I I+ +N FD +N + + Sbjct: 58 GIHPKDVQDAP-TLPEVYPTIKSLLESG---IVVAHNAVFDVSVIKNCCLNTGCPVPKVT 113 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +D + + R + + KL +A I + H +D Sbjct: 114 Y------FDSVPLSRRAFPLLVN-------------HKLDTVARYLKIPLDHHHAG-SDA 153 Query: 182 YATLAL----VWLIREKKPKLFEYLYDYRNKN 209 YA LA+ + + K Sbjct: 154 YACLAIVAAAMAKYEMCDCETMLNYLKISLKR 185 >gi|123442599|ref|YP_001006576.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089560|emb|CAL12409.1| exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 221 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 54/222 (24%), Gaps = 38/222 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET + A V + + F EA+ I IT Sbjct: 3 FRVIDTETTSF---EGSVLEIASVDI-VDGKICNPMSDF---VKPTEAISFEAMAIHHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++E I ++ + I +N FD Sbjct: 56 ENMVADAPLIEH----VIDKYL---DADIYVAHNAAFDRE------------------KL 90 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + ++ WP G + + E ++AH A D Y T Sbjct: 91 PQITAPWVCTLKLSRKL------WPEGGHGNQYLRYAHGLNPDVPEGLHAHRALYDCYVT 144 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226 L+ + + + + L + Sbjct: 145 AELLLHMNRIARWTVAEMREITKRPSLLHAMAFGKHKGKTFT 186 >gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190] gi|326953483|gb|AEA27180.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190] Length = 204 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 16/153 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-----TEVFFCKPA--DDYLP 53 M + V D E G D+ D + A + D + A D + Sbjct: 1 MNDRLVWIDCEMTGLDLQRDALIEIAVLVTDGDLNVLGEGVDVVIHADESALAAMPDVVR 60 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY----NNIRFDDYYSRNI 109 D A G+T ++ R V E + + + + N+I D + Sbjct: 61 DMHARS--GLT-EEVRRSTVTLQEAEQAVLAYVREHVPDPVSAPLAGNSIATDRGFL--A 115 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D++ S L F Sbjct: 116 RDMPELDAHLHYRMVDVSSIKELCRRWFPRVFY 148 >gi|160882895|ref|ZP_02063898.1| hypothetical protein BACOVA_00857 [Bacteroides ovatus ATCC 8483] gi|260173743|ref|ZP_05760155.1| putative DNA polymerase III epsilon chain [Bacteroides sp. D2] gi|315922007|ref|ZP_07918247.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156111759|gb|EDO13504.1| hypothetical protein BACOVA_00857 [Bacteroides ovatus ATCC 8483] gi|313695882|gb|EFS32717.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 198 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V + +P +Y + Sbjct: 1 MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E I + + +N FD+ R ++ Y + Sbjct: 56 GLTYDDTMEADE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + R + +L +A G N H A AD Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153 Query: 182 YATLALV 188 A + Sbjct: 154 EACAQIA 160 >gi|88858891|ref|ZP_01133532.1| oligoribonuclease [Pseudoalteromonas tunicata D2] gi|88819117|gb|EAR28931.1| oligoribonuclease [Pseudoalteromonas tunicata D2] Length = 181 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + + D E G + D+ + A + D + V +D+ L D V Sbjct: 7 NLIWLDLEMTGLEPKTDKILEIATIVTDCDLNILAEGPVIAVHQSDELLDGMDEWCVKQH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + + + E + + F + N+I D + Sbjct: 67 GGSGLTARCRQSSFTEQDAIEQTISFLEKWVPKGKSPMCGNSIGQDRRFLNAYMPELEDY 126 Query: 117 SYRW 120 + Sbjct: 127 FHYR 130 >gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091] Length = 225 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + +R + E T F +P + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|256377108|ref|YP_003100768.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255921411|gb|ACU36922.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 372 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 31/197 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D E R + A V D + P + +P A GIT Sbjct: 94 VVLDTE---LTDFTGRVIEIAVVATDG-----ATLLTSLVDP-EGAQINPYAQRAHGITA 144 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q +E + ++ +I +N +R+ + Sbjct: 145 QMLTGAPTLE-QLWPKLDHVLR--GKRVIAWNAPFDLTRL--RAEHRHLFGD------AD 193 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 W + A+ + ++ G + +L H A+ D A L Sbjct: 194 LPDWLTGPWLCAMRKHAAWVGDRNTKGGGFRNHRL-----------EGGHRAEGDCLAAL 242 Query: 186 ALVWLIREKKPKLFEYL 202 A + + + P + Sbjct: 243 AWIKRMADTAPGTEAHA 259 >gi|262201950|ref|YP_003273158.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] gi|262085297|gb|ACY21265.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] Length = 194 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 50/189 (26%), Gaps = 13/189 (6%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT--- 61 D E G + D+ + A + D + DD L + Sbjct: 2 WIDCEMTGLSLESDKLIEIAALVTDGDLNILGEGVDVVIHADDDALANMPDVVTKMHADS 61 Query: 62 GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G+T ++ V AE I + + N+I D + D+ Sbjct: 62 GLT-EEVRASTVTLAEAEKLVLDYIRAHVTTAGAVPLAGNSIATDRGFI--ARDMPELDA 118 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ-WPSRDDGATSFKLQDLALANGIEHVNAHD 176 Y S L + + R +++L V A Sbjct: 119 YLHYRMVDVSSIKELSRRWYPRIYFGQPEKGLAHRALADIRESIRELRYYRAAAFVPAPG 178 Query: 177 AKADVYATL 185 AD AT+ Sbjct: 179 PDADALATI 187 >gi|226326657|ref|ZP_03802175.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198] gi|225204878|gb|EEG87232.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198] Length = 181 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D Q + Sbjct: 6 NNLIWIDLEMTGLDPECDRIIEIATIVTDPQLNILAE 42 >gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32] gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32] Length = 241 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + R+D + ST F +P + + A+ G Sbjct: 47 VVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEGANIEQAALDFNG 106 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ S + I+ +N FD + R Sbjct: 107 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 166 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 167 K------RVPFHPFATFDTAALSGLAYGQTV-------------LAKACRTAGMEFDNKE 207 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 208 AHSALYDTQKTTELFCGIVNK 228 >gi|207725335|ref|YP_002255731.1| oligoribonuclease protein [Ralstonia solanacearum MolK2] gi|206590571|emb|CAQ37533.1| oligoribonuclease protein [Ralstonia solanacearum MolK2] Length = 185 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 7/117 (5%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--ITGIT--PQ 66 E G DR + A V D + + V +D+ L +A G + Sbjct: 2 EMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWNKGTHGRSGLID 61 Query: 67 KALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 K EA+ + F + + N+I D + + + Sbjct: 62 KVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYR 118 >gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) Length = 224 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 63/200 (31%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V D + FF +P + +P A+ TG Sbjct: 32 VVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+++ E R I + I+ +N FD + R Sbjct: 92 IKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 + S +D + Y + L A G E N A Sbjct: 152 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGXEFDNREA 192 Query: 175 HDAKADVYATLALVWLIREK 194 H A+ D T L I + Sbjct: 193 HSARYDTEKTAELFCGIVNR 212 >gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 485 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 27/191 (14%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V R+ ++ +PAD + ++ Sbjct: 26 IAFFDLETS-VPQRAGQGYALLEFGAILVCPRRLVEVACYATL-VRPADLGVVSAASMRC 83 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + + + G+N +RFD R F Sbjct: 84 NGITRDAVAAAP-CFRDVADKAYDLL--HGRVWAGHNIVRFDVPRIREAFIEIGRPPPE- 139 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ A K+ LA G+ H + D Sbjct: 140 ----PKGMIDTLPLL------------TQRFGRRAGDMKMASLANYFGLGRQK-HRSLDD 182 Query: 181 VYATLALVWLI 191 V L ++ Sbjct: 183 VRMNLEVLKYC 193 >gi|300781342|ref|ZP_07091196.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533049|gb|EFK54110.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 194 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 43/184 (23%), Gaps = 17/184 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G V V I+ + + A + ++ + G+T Sbjct: 22 LLAVDVETTGLKPDKHHLVSIGWVPVTD--RVIDLSGAGYFVLAGASV--GDSATVHGVT 77 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R+GV Q + + Sbjct: 78 DDDIAREGVDAQVALDAFLQAIE-------------GRALLAHFAQMETGFIDALHKRVY 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G D + + ++ + +L + + H+A D A Sbjct: 125 GKRFRLREDEVEDTLSLERRHMERMATYPRGEDLRLARVRSRYNLPDYGNHNALTDALAC 184 Query: 185 LALV 188 L Sbjct: 185 AELY 188 >gi|124268095|ref|YP_001022099.1| oligoribonuclease [Methylibium petroleiphilum PM1] gi|124260870|gb|ABM95864.1| putative oligoribonuclease protein [Methylibium petroleiphilum PM1] Length = 191 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 7/110 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 + + D E G D DR + A V D VF +D L +A Sbjct: 16 QNLIWIDLEMTGLDPLNDRIIEIAVVVTDPGLTVRIEGPVFAVHQSDAVLDAMDAWNKGT 75 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105 G + + V EA R++ +F + N+I D + Sbjct: 76 HGRSGLIDRVKASTVDEAAAERQVIEFLKAYVPAGKSPMSGNSICQDRRF 125 >gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] Length = 218 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 63/201 (31%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + +D Q + ST F +P + + A+ G Sbjct: 20 VVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P ALR V E + I++ + + II +N FD + R Sbjct: 80 IHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L A G+E N Sbjct: 140 K------RVPFHPFATFDTAALSGLAYGQTV-------------LAKACKAAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T AL I K Sbjct: 181 AHSALYDTQQTAALFCGIINK 201 >gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group] gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group] Length = 436 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 28/193 (14%) Query: 5 FVIYDYETF---GRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET G R +F + + + ++ V +P+D + EA+ Sbjct: 23 IAFFDVETSMPWG--PRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVT-EALER 79 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + + IH G+N I FD R F Sbjct: 80 KGITRGALEDAP-PFCDVADNIHNVL--HGRIWAGHNIISFDSEIIREAFAEIGRSPPE- 135 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D L ++ + A + K+ +LA + H + D Sbjct: 136 ----PKGMIDTLPLL------------TQTFGRRAGNMKMANLADYFNLGP-QIHRSLYD 178 Query: 181 VYATLALVWLIRE 193 V L ++ Sbjct: 179 VRMNLDVLKCCST 191 >gi|256827080|ref|YP_003151039.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Cryptobacterium curtum DSM 15641] gi|256583223|gb|ACU94357.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Cryptobacterium curtum DSM 15641] Length = 325 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 42/184 (22%), Gaps = 14/184 (7%) Query: 8 YDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 D ET GR R V++ + + + PA I GIT Sbjct: 137 VDLETTGRAPDRGRIINVGWEYVKLAEGEKPFGACAAWCGLPAQYEETGVPLTEIHGITW 196 Query: 66 QKALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 +++ + Q + +N D + ++ Sbjct: 197 DDIADRPQFRDDSDLQASLLQALEAFP--YLAHNAAFEDA--------WLLLNLNGYAEG 246 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R +D P+ P A+ + H D Sbjct: 247 RKAGRIVPVDTRDICRQLDPEVRYLPHESRPASLESWARRRKTLSADEDERHLGLDDTDL 306 Query: 184 TLAL 187 L Sbjct: 307 MLRT 310 >gi|104783881|ref|YP_610379.1| oligoribonuclease [Pseudomonas entomophila L48] gi|122401621|sp|Q1I440|ORN_PSEE4 RecName: Full=Oligoribonuclease gi|95112868|emb|CAK17596.1| oligoribonuclease (3'->5' exoribonuclease) [Pseudomonas entomophila L48] Length = 180 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + F I N+I D + Sbjct: 64 THGNSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRGLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|229588067|ref|YP_002870186.1| oligoribonuclease [Pseudomonas fluorescens SBW25] gi|312958644|ref|ZP_07773164.1| exonuclease [Pseudomonas fluorescens WH6] gi|229359933|emb|CAY46787.1| oligoribonuclease [Pseudomonas fluorescens SBW25] gi|311287187|gb|EFQ65748.1| exonuclease [Pseudomonas fluorescens WH6] Length = 180 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G + D + A + D + V +D L D Sbjct: 4 PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHHSDAVLATMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE F I N+I D + Sbjct: 64 THGNSGLTQRVRDSRISMAEAEAETIAFLEKWVPKGKSPICGNSICQDRRFLYTHMKGLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 SYFHYR 129 >gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] Length = 177 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + A V + + + + GI Sbjct: 2 NFVAMDFET--ANAKRASACSIALAIVRDN-QITNEFYSL---INPEMDFSWRNINVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E R I FS ++ +N FD+ + R ++ Sbjct: 56 HERDVVDAP-TFPEVWRHIQPLFSANK--LVIAHNASFDNSVLKRTLER---------YE 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD +R F P KL L I + H+A D A Sbjct: 104 VQPPHYLTLDTLRTSKQFYPTLEN----------HKLNTLCDKLNIVLKHHHNALDDSVA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CANIL 158 >gi|119961384|ref|YP_948135.1| oligoribonuclease [Arthrobacter aurescens TC1] gi|119948243|gb|ABM07154.1| putative oligoribonuclease [Arthrobacter aurescens TC1] Length = 211 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 40/213 (18%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------- 49 V D E G D+ D + A + D + + KP D Sbjct: 6 ERIVWIDCEMTGLDLTNDALIEVAALVTDSELNILGDGVDVVIKPDDAALEQMNDFVRDM 65 Query: 50 -------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 D LP G T +A EA+ I ++ P +G N++ D Sbjct: 66 HTRSKLLDELP-------HGKTMAEA------EAQVLEYIEKWVPDPRKAPLGGNSVGTD 112 Query: 103 DYYSRNIF-----YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGA 155 + + ++ + + RW ++ D Sbjct: 113 RMFLARDMPNIVEHLHYRVIDVSTIKELSRRWFPRAYFQSPAKHGGHRALGDIKDSIDEL 172 Query: 156 TSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 ++ A G + A D+ AT ++ Sbjct: 173 RYYRQAVFVPAPGPDTATAQRISKDIIATAEVL 205 >gi|149197350|ref|ZP_01874401.1| DNA polymerase III [Lentisphaera araneosa HTCC2155] gi|149139368|gb|EDM27770.1| DNA polymerase III [Lentisphaera araneosa HTCC2155] Length = 210 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 30/188 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63 +V+ D E G D+ A V++ + +I+S E F+ + E + I + Sbjct: 30 YVVIDCEMTGLKPKQDKLLSIAAVKISQG--RIQSQESFYRVIFQEKQKLRDETILIHRL 87 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ ++ + +F CI + D + + F + Sbjct: 88 NHEQISTG----SDQIAVLKEFSDFCQNCIPVGHFFDIDLSFLNPVMPLPFLYPH----- 138 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D +++ + +S +L +L + AH+A D + Sbjct: 139 -----LDTRLLVKTLQPC-------------PSSIQLNELCDFYNLPSFEAHNALGDATS 180 Query: 184 TLALVWLI 191 T L I Sbjct: 181 TACLFLKI 188 >gi|270261380|ref|ZP_06189653.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13] gi|270044864|gb|EFA17955.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13] Length = 222 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 56/216 (25%), Gaps = 38/216 (17%) Query: 7 IYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + A V +D I + + D +A+ I IT Sbjct: 5 VIDTETCGLD---GGVVEVASVDLIDDH---IANPMSDLV--SPDRPISIDAMAIHHITE 56 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + I ++ + +N FD Sbjct: 57 QMVEGKPR----IAVAIGRYL---GSPYYVAHNAAFDRGV------------------LP 91 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 R + M+ PD + + L + H A D Y T Sbjct: 92 EMRGAWICTMKLARTLYPDI----KYGNQYLRYALNLEVQLPQDTTLYPHRALYDCYVTA 147 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 AL+ I + E + + L K Sbjct: 148 ALLQRIVKDSGWTPEQMAQITEQPVLLKKFKFGKYR 183 >gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum IFO 3956] gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum 28-3-CHN] gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum IFO 3956] gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum 28-3-CHN] Length = 179 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET A + + R + + + + + GI Sbjct: 2 NFIAMDFET--ASAKRFSACSLA-ITIVRNSQIQDEFYTLINPQTPFFWRN---TQVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E I +FF+ P+ +I +N + + + + Sbjct: 56 HERDVKDAP-TFPEVWEHIQEFFT-PDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQT-- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L R + KL + I+ + H+A D +A Sbjct: 112 -----LDTLKTSR-------------QLFPAFPNHKLNTICDQLNIDLHHHHNALDDAHA 153 Query: 184 TLALVWLIREK 194 ++ Sbjct: 154 CANILLYQANH 164 >gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1] gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1] Length = 241 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 59/199 (29%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + +D Q S F +P + + EA+ TG Sbjct: 44 VVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEGANLEKEALEFTG 103 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ + I+ +N FD + R Sbjct: 104 IRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDHSFVSAANERAKL 163 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A ++ AH Sbjct: 164 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNREAH 206 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 207 SALYDTQKTAELFCRIVNK 225 >gi|170723851|ref|YP_001751539.1| oligoribonuclease [Pseudomonas putida W619] gi|169761854|gb|ACA75170.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] Length = 180 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + F I N+I D + Sbjct: 64 THGGSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRSLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|38638095|ref|NP_943205.1| hypothetical protein pEL60p06 [Erwinia amylovora] gi|37681993|gb|AAQ97880.1| ORF6 [Erwinia amylovora] Length = 282 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 24/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G + D I F + + +A + GI Sbjct: 105 LFLDTETTGLG-NTAEALEIG--LTDAAGRVI-----FETRLKPTVAIEAQAAAVHGIDE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + ++ + N FD + + + Sbjct: 157 PALSGAP-SWPDVALQLRHAI---GARPVIIFNAPFDTRILKQTAAAHGDPA-------- 204 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + A + + + T + A AH A AD T Sbjct: 205 ----DWLGELTVYCAMELAAGYFGATNRYGTISLASAASQAALTWEGEAHSAIADARMTA 260 Query: 186 ALVWLIREKK 195 +V I Sbjct: 261 GVVNAIAAYH 270 >gi|330720662|gb|EGG98910.1| 3'-to-5' oligoribonuclease (orn) [gamma proteobacterium IMCC2047] Length = 182 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 9/126 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 +H + D E G + D + A + D I VF + + + D Sbjct: 5 DHLIWVDLEMTGLEPDHDTIIEIATIVTDSDLNVIAEGPVFAIHQSAETMAGMDEWNTNQ 64 Query: 61 TGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ L V EAE + Q+ + N+I D + + Sbjct: 65 HGGSGLTQRVLDSDVSMEQAEAETIAWLEQYVE-AGKSPMCGNSIGQDRRFMVKYMPKLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 VFFHYR 129 >gi|119491524|ref|XP_001263283.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181] gi|119411443|gb|EAW21386.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181] Length = 188 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 11/129 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----DPEA 57 T+ V D E G + D Q D ++ E F D P Sbjct: 7 TDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLD-PEGFETIIRHDRSVLDSMSPWC 65 Query: 58 VFIT---GITPQKALRDGVVEAEFSRR---IHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 V G+T A + I ++ P T ++ N++ D + Y Sbjct: 66 VDTHGRTGLTAAVLASTTNPAAAAASLLAYIQRYVPRPRTALLAGNSVHADKMFLAKEPY 125 Query: 112 RNFYDSYRW 120 + + + Sbjct: 126 KAVLEWLHY 134 >gi|29346841|ref|NP_810344.1| putative DNA polymerase III epsilon chain [Bacteroides thetaiotaomicron VPI-5482] gi|298386512|ref|ZP_06996068.1| exonuclease [Bacteroides sp. 1_1_14] gi|29338738|gb|AAO76538.1| putative DNA polymerase III epsilon chain [Bacteroides thetaiotaomicron VPI-5482] gi|298260889|gb|EFI03757.1| exonuclease [Bacteroides sp. 1_1_14] Length = 180 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 52/187 (27%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R + ++ +P +Y + Sbjct: 1 MKDFAAIDFET--ANGKRTSVCSVGVVIV-RNGKIVKKIY-RLIRPCPNY-YTQWTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + I + + +N FD+ + ++ Y + Sbjct: 56 GLTYADTEEA-EDFPDVWAEIKPLI---DGLPLVAHNSPFDE-----GCLKAVHELYEMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + N + R + +L +A G + N H A AD Sbjct: 107 YPN----YKFYCTCRTSRKVF---------GKELPNHQLHTVAARCGYDLTNHHHALADA 153 Query: 182 YATLALV 188 A + Sbjct: 154 EACAQIA 160 >gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894891|gb|EFG74612.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 215 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 20/155 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D+ + A + D + ADD + Sbjct: 1 MRDELVWIDCEMTGLDLGTDKLIEIAALVTDADLNILGDGVDVVIH-ADDAALSSMIDVV 59 Query: 61 TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 T + R G++ EA + Q P T + N+I D + Sbjct: 60 T----EMHSRSGLIDEVRASTVDLATAEAMVLDYVGQHVKQPKTAPLAGNSIATDRAFI- 114 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 DS+ S L + Sbjct: 115 -ARDMPALDSFLHYRMIDVSSIKELCRRWYPRIYF 148 >gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis] gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis] Length = 194 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 7/183 (3%) Query: 5 FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 V +D ET + A R +F + V R+ +IES +P D + + Sbjct: 15 IVFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLI-RPKDLSVVALRSGRSG 73 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT E E S +I+ + G+N RFD + F D Sbjct: 74 GITRNAVADAPAFE-EVSDKIYSILN--GRIWAGHNIRRFDCIRIKEAFAELGKDPPVPV 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + R + L D+ + + + Sbjct: 131 GMIDSLGVLSQKFGRRAGNLKMATLADYFGLGQQKHRSLDDVRIKSSNSIEWQMAQLFNS 190 Query: 182 YAT 184 Y T Sbjct: 191 YYT 193 >gi|77456743|ref|YP_346248.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1] gi|123606183|sp|Q3KIZ7|ORN_PSEPF RecName: Full=Oligoribonuclease gi|77380746|gb|ABA72259.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1] Length = 180 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE F I N+I D + Sbjct: 64 THGNSGLTQRVRESRVSMAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKALE 123 Query: 115 YDSYRW 120 + Sbjct: 124 SYFHYR 129 >gi|28572517|ref|NP_789297.1| oligoribonuclease [Tropheryma whipplei TW08/27] gi|81839179|sp|Q83HW9|ORN_TROW8 RecName: Full=Oligoribonuclease gi|28410649|emb|CAD67035.1| oligoribonuclease [Tropheryma whipplei TW08/27] Length = 184 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 15/117 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58 +H V D E G + D + A + D+ ++ P+ + L A+ Sbjct: 7 PSHLVWVDCEMTGLNPERDELLEVAVIVTDKDLLPLDEGVNVVVSPSSEAL---GAMDNY 63 Query: 59 -----FITGITPQKALRDGVVEAEFSRR--IHQFFSVPNTCIIGYNNIRFDDYYSRN 108 ++G+ + + V EA+ + I + I+ N+I D + Sbjct: 64 VARMHRVSGLLDELSNGVPVSEAQAMVKEYITKHIKTGG--IMSGNSIATDRLFITR 118 >gi|255021393|ref|ZP_05293441.1| Exodeoxyribonuclease X [Acidithiobacillus caldus ATCC 51756] gi|254969256|gb|EET26770.1| Exodeoxyribonuclease X [Acidithiobacillus caldus ATCC 51756] Length = 220 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 41/221 (18%) Query: 6 VIYDYETFGRDVALDRP----AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +I+D ET G R + A +RV + + E F + + A+ + Sbjct: 4 LIFDTETTG------RIAPELIEAAWLRV-GELRTLAVEEEFVRRYRPSKPIEMGAMAVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I + +F +T + ++I +D Sbjct: 57 HILDEDLEDCPPA--------SEFSLPADTEYLIGHSIDYDWEVIG-------------- 94 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 R + R ++ Q + + NAH A ADV Sbjct: 95 -KPEVKRICTFAMSRKLWPEVDSHSQSALLFYFSKDRRKTR------DNLKNAHSALADV 147 Query: 182 YAT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L ++ +P +E L+++ + ++ + + Sbjct: 148 KFCRIILNRILLAVRPASWEALWEFSERARIPETMPFGKHR 188 >gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 336 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 52/189 (27%), Gaps = 29/189 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F D+ET + P +V R + +E PA D V I Sbjct: 1 MGLDFTAIDFET--ANGFRGSPCAVGLTKV-RGGKVVEEAAWLMRPPAGHDHFDYHNVRI 57 Query: 61 TGITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT G + I F ++ +N FD R+ + Sbjct: 58 HGITAADV--AGRSRFGDLFPEIGAFI---GDDVLAAHNAAFDLGVIRSALEVSGLP--- 109 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +D + + S L A G+ + HDA Sbjct: 110 ------GPAYDYVCTVMLSRRCY-----------SLVSNSLPFAAEEAGVPLLRHHDAAE 152 Query: 180 DVYATLALV 188 D A ++ Sbjct: 153 DARACAGIL 161 >gi|268679542|ref|YP_003303973.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617573|gb|ACZ11938.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 292 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 21/195 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++ D ET G DR Q A V + ++E C+P + EA+ + I Sbjct: 2 KIILLDTETTGI-YEKDRICQLAF-LVLNEELEVEEIHNDLCQPP--VMISYEAMAVHHI 57 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP++ + + + + P ++ +N + Sbjct: 58 TPERVAHEVSCIQTRAYQRLLELNTPYNLLVIHNASFDLTMLEKE--------------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADV 181 S+ +L+D R + A+ P+ + + + + + AHDA DV Sbjct: 103 GFVSQMNLVDTFRILRAYYPNEGSFSLQYKRYQWGLYHQEATFQKKHTVSIEAHDALGDV 162 Query: 182 YATLALVWLIREKKP 196 L + E+ Sbjct: 163 VVLKHLFEKLCEEHS 177 >gi|70734062|ref|YP_257702.1| oligoribonuclease [Pseudomonas fluorescens Pf-5] gi|85542915|sp|Q4KJ81|ORN_PSEF5 RecName: Full=Oligoribonuclease gi|68348361|gb|AAY95967.1| oligoribonuclease [Pseudomonas fluorescens Pf-5] Length = 180 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G + D + A + D + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHQSDEILAGMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + F I N+I D + Sbjct: 64 QHGGSGLTQRVRESRISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMKALE 123 Query: 115 YDSYRW 120 + Sbjct: 124 SYFHYR 129 >gi|269123524|ref|YP_003306101.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] gi|268314850|gb|ACZ01224.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] Length = 205 Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 35/209 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDP 55 M + +D ET G + D + ++V K+ + F+ + + P+ Sbjct: 1 MIKKVIFFDVETNGVNP-TDSVLSISAMKVTYDTITNKMVKLGEFDRFYFR-NEGEEPNF 58 Query: 56 EAVFITGITPQKA-LRDGVVEAEFSRRIHQ----FFSVPNTC-IIGYNNIRFDDYYSRNI 109 +A+ + G+ + R + ++++ ++ FF + +NIRFD Sbjct: 59 DALNVNGLFDDEIERRRNLSLIKYAKTFNEDIVNFFEFCDNAEHFVAHNIRFD------- 111 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 R F + + +D+++ +WP KL + A I Sbjct: 112 --RQFIPFKLKYQFDTM--LENIDIVKIPSNSYYSSFKWP---------KLMECANYYNI 158 Query: 170 EHVNA--HDAKADVYATLALVWLIREKKP 196 H++ DV +++ + + Sbjct: 159 PVDENELHNSMYDVVIMGRVMFKMLKDNE 187 >gi|92113396|ref|YP_573324.1| oligoribonuclease [Chromohalobacter salexigens DSM 3043] gi|91796486|gb|ABE58625.1| Exonuclease [Chromohalobacter salexigens DSM 3043] Length = 187 Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 46/169 (27%), Gaps = 9/169 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 V D E G D +R + A + D + V D L D G Sbjct: 14 LVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVLAVHQPDALLAGMDEWNTRTHG 73 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + Q+ + AE R+ F PN+ + N++ D + Sbjct: 74 DSGLTQRVRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRRFLVREMPE--LAD 131 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 + + S L A + + L +LA Sbjct: 132 FFHYRNLDVSTLKELAKRWNPQALEGFEKRNTHQAMDDIRESLAELAHY 180 >gi|54023254|ref|YP_117496.1| oligoribonuclease [Nocardia farcinica IFM 10152] gi|59797997|sp|Q5Z0A9|ORN_NOCFA RecName: Full=Oligoribonuclease gi|54014762|dbj|BAD56132.1| putative oligoribonuclease [Nocardia farcinica IFM 10152] Length = 216 Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 13/152 (8%) Query: 1 MTNHFVIY-DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEA 57 M++ V++ D E G + D+ + + + D + D L P Sbjct: 1 MSDKLVVWMDCEMTGLRLDSDKLIEVSALVTDSDLNILGDGVDIVIHADDAALAAMPPVV 60 Query: 58 VFIT---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + G+T + R V E + I Q+ P T + N+I D + Sbjct: 61 AEMHARSGLTDE-VRRSTVTVAEAEQQVLDYIRQYVPTPRTVPLAGNSIATDRAFI--AR 117 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D++ S L + Sbjct: 118 DMPALDAHLHYRMIDVSSIKELCRRWYPRIYF 149 >gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112] gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112] Length = 177 Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V R E ++ D + + I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMV-RNTEIVDRFYTV---INPQMPFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I ++ +N RFD R R Sbjct: 56 TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ Y + + KL ++ A +E + H+A +D A Sbjct: 103 ---------NISEPHYLVIDTLTTSKRFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|303240841|ref|ZP_07327353.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] gi|302591569|gb|EFL61305.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] Length = 182 Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 5/110 (4%) Query: 4 HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++I+D E + V+++ + E +++ F KPA + + + Sbjct: 2 NYIIFDLEATCWENDKSKTSEIIEIGAVKLNDRLEVVDTFSKFI-KPAIYPVLSDFCIRL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 T I + + + + +T + + +D Sbjct: 61 TSIEQKDVDTAD-IFKNVMVEFENWITSSDTEVALCSWGFYDKKQIYKEC 109 >gi|119776164|ref|YP_928904.1| oligoribonuclease [Shewanella amazonensis SB2B] gi|166216584|sp|A1SA28|ORN_SHEAM RecName: Full=Oligoribonuclease gi|119768664|gb|ABM01235.1| oligoribonuclease [Shewanella amazonensis SB2B] Length = 181 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 20/144 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPD 54 + + D E G + +DR + A + D+ I ++ D Sbjct: 6 KNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDDWNQQH 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN--- 108 A + ++ EA+ + F S+ + N++ D + Sbjct: 66 HGASGL----IERVRSSQYTEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYMR 121 Query: 109 --IFYRNFYDSYRWSWDNGNSRWD 130 + ++ + + RWD Sbjct: 122 ELEDFFHYRNIDVSTIKELVKRWD 145 >gi|330807223|ref|YP_004351685.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375331|gb|AEA66681.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 180 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G + D + A + D + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEILAGMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + F I N+I D + Sbjct: 64 QHGGSGLTQRVRESKISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKSLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 SYFHYR 129 >gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str. C58] gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str. C58] Length = 202 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 30/179 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + + + + E +P D P + + Sbjct: 1 MKTIAI-DFET--ANEERGSACSVGLAWI-EDGQIV-RVEERLIRPR-DMRFSPFNIAVH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ EF + +F + + +N FD R F Sbjct: 55 GIRPRDVEDAP----EFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFD---------K 101 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + L ++ P S KL +A + V+ H+A D Sbjct: 102 YRLSYPDLSYLCSVKIARHVWPHL----------VSHKLNVIAHHLQLRFVH-HNAAED 149 >gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 225 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 26/205 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A + +D + + T F +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + I+ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L + + A + AH Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQ-----------------AADIDFDGREAHS 195 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A+ D T L I + ++ + Sbjct: 196 ARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|313497913|gb|ADR59279.1| Exonuclease [Pseudomonas putida BIRD-1] Length = 183 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 21/187 (11%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V R+ +++ + F KP P +T Sbjct: 5 LVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQ-RFVKPRRRPQLTPFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ E ++ G++ + + YD + Sbjct: 64 HISQADVDSA-APFREVWASFERWL--------GHHRGQL-----QAWVSWGDYDRQQLH 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D L + LA + H A D Sbjct: 110 QEWQQHSLDSLLRTLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFC--GQQHRALEDA 167 Query: 182 YATLALV 188 T L+ Sbjct: 168 RNTARLL 174 >gi|322691183|ref|YP_004220753.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456039|dbj|BAJ66661.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp. longum JCM 1217] Length = 185 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 4/59 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITG 62 + D ET G D D + + + ++ + P + G Sbjct: 13 LLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHW---EGKPSEFIQGMHG 68 >gi|255633388|gb|ACU17051.1| unknown [Glycine max] Length = 242 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G ++ +DR + A + D I T+ + + Sbjct: 61 LVWIDLEMTGLNIEVDRILEIACIITDGNLTKTVESPDLVIHQTKECLDRMGEWCQSHHA 120 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRN 108 A +T K L+ + E E ++ +F T + N+I D + + Sbjct: 121 ASGLTK----KVLKSTISEGEAEEQVIEFVKRYVNVGSYTPHLAGNSIYVDFQFLKK 173 >gi|332845432|ref|XP_003315044.1| PREDICTED: ERI1 exoribonuclease 2 isoform 2 [Pan troglodytes] Length = 279 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +I+S + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|303257152|ref|ZP_07343166.1| oligoribonuclease [Burkholderiales bacterium 1_1_47] gi|302860643|gb|EFL83720.1| oligoribonuclease [Burkholderiales bacterium 1_1_47] Length = 180 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 9/163 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 N+ + D E G + ++R + A V D Q I V L + ++ Sbjct: 5 NNLIWMDLEMTGLEPQINRILEMAAVITDPQLNVIAEGPVVAIHQDASILSNMDSWNTAT 64 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+ + L V E E ++ FFS + N+I D + R Sbjct: 65 HTRSGLVN-RCLESKVTEDEAAQIFIDFFSKYVPAGKSPLCGNSIGQDRRFMARWTPRLE 123 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 + + D + + + + + + D S Sbjct: 124 QFFHYRNLDVSSFKECVKRWAPEVMKKYQKTSRHEALSDIYDS 166 >gi|239629146|ref|ZP_04672177.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519292|gb|EEQ59158.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 64/241 (26%), Gaps = 31/241 (12%) Query: 4 HFVIYDYETFGRDVA--LD-------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 ++++ D E + + D + V +D Q+ KP Sbjct: 2 NYIVLDLE-WNQSPNGKEDSVEHLPFEIIEIGAVMLDHQFRAAGEFHKLI-KPQVYKKMH 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + +T + +K ++G + + + + + RN Sbjct: 60 FKISEVTHMDMKKLCQEGQPFKAVMQEFLDWCGEGDFRFCTWGS------MDLTELQRNM 113 Query: 115 YDS-YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + +D+ + Y DG L G+ Sbjct: 114 IYHKMEIPFPRPLLYYDIQKLYCLQY------------GDGKNKVSLDQAVQLQGMAEDR 161 Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232 H A D Y T ++ ++ +K ++ + Y + VS F + Sbjct: 162 PFHRALDDAYYTGKILSVLDMEKYGVYVSVDYYGLPETKENEYRLFFPEYTKFVSREFNS 221 Query: 233 S 233 Sbjct: 222 R 222 >gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521] gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521] gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 975 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 13/160 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ + D ET G D + ++ I + E +P TG Sbjct: 10 DNVIYLDIETTGLDETSSEIIEIGAIKFKD--NTITTFETLIR--PRGRVPIGIYNLCTG 65 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++ ++ + QF + +N F+ + +R + + Sbjct: 66 LSKEELYSAP-SLGNVRESLSQFLED---LPLICHNGNFEKKF-----FRYHLPQIKNTI 116 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + +L+ Y + + L D Sbjct: 117 MDSMELAAILEPYHKEYNLNALMKTVTDMNKNEIHRGLDD 156 >gi|218505680|ref|NP_001136197.1| ERI1 exoribonuclease 2 isoform 1 [Homo sapiens] gi|190359336|sp|A8K979|ERI2_HUMAN RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease domain-containing protein 1 gi|119587241|gb|EAW66837.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_b [Homo sapiens] Length = 691 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +I+S + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|54310468|ref|YP_131488.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914911|emb|CAG21686.1| putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 207 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 20/193 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D ET D A + + +I +++ D ++ I Sbjct: 28 DELVSVDCETTSLDPHSAELVTIAATVI--KNNRILTSKSIHLTLRAPISLDANSITIHR 85 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q G+ E E + F N ++GY+ R + Sbjct: 86 IRHQDLR-AGLGEKEALTTLLNFI--GNRPLVGYHIRYDKTILDRYYRRLFGFALPNKLV 142 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + D L+ + + L+ ++ G+ HDA D Sbjct: 143 EVSHLYHDRLERLLPNAYY---------------DLSLEAISRHLGLPVPERHDALEDTI 187 Query: 183 ATLALVWLIREKK 195 + ++ Sbjct: 188 TAALIYVRLKHGD 200 >gi|26991580|ref|NP_747005.1| oligoribonuclease [Pseudomonas putida KT2440] gi|148549980|ref|YP_001270082.1| oligoribonuclease [Pseudomonas putida F1] gi|37999402|sp|Q88DC5|ORN_PSEPK RecName: Full=Oligoribonuclease gi|166216581|sp|A5W9T8|ORN_PSEP1 RecName: Full=Oligoribonuclease gi|24986668|gb|AAN70469.1|AE016688_8 oligoribonuclease [Pseudomonas putida KT2440] gi|148514038|gb|ABQ80898.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1] gi|313500881|gb|ADR62247.1| Orn [Pseudomonas putida BIRD-1] Length = 180 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + F I N+I D + Sbjct: 64 THGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|329937943|ref|ZP_08287425.1| oligoribonuclease [Streptomyces griseoaurantiacus M045] gi|329302900|gb|EGG46789.1| oligoribonuclease [Streptomyces griseoaurantiacus M045] Length = 200 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P D+ L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSSDALIEVAALVTDSELNVLGEGVDIVIRPPDEALETMPEVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + +AE + + P + N++ D + Sbjct: 61 EMHTSSGLLSELASGTTMADAEERVLAYVREHVKEPRKAPLCGNSVGTDRGFLAR----- 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N E Sbjct: 116 --DMPSLEEYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKNG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 155 NHRALADIRESIAELRYYRE 174 >gi|319779642|ref|YP_004130555.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9] gi|317109666|gb|ADU92412.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9] Length = 181 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 7/123 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITGI 63 V D E G + DR + A + + + V+ D L + Sbjct: 9 VWLDMEMTGLNPDQDRIIEVAVIITEADLSVVAEAPVYVIHQDDAILNSMDKWNTSTHTK 68 Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + K + EA+ + +FF + N++ D + + + Sbjct: 69 SGLVSKVKESKLNEAQVEEALLKFFKEHIPEGCIPLCGNSVNQDRRFMFKYMPKLEKYLH 128 Query: 119 RWS 121 + Sbjct: 129 YRT 131 >gi|227504725|ref|ZP_03934774.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] gi|227198735|gb|EEI78783.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] Length = 451 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 24/226 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62 +F D ET + Q VR R +++ES + C P + + I G Sbjct: 100 NFTAVDVET--ANDDWGSVCQIGAVRF-RDGQEVESR-TWLCTPPPGLEEFADINISIHG 155 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I P+ A + F ++ +N +FD R+ + + Sbjct: 156 IKPEDVADAQPFAAAAAEL----FEFLGEDVLVAHNAQFDSTALRSGLRKASASIPEIT- 210 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + + + KL +A G E H+A AD Sbjct: 211 --------------LACSLALARDASKAGVIDVANHKLPTVASFCGAEDFQHHEATADAR 256 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 A +V + + +R + +D + P++ Sbjct: 257 AAGVIVVDLARRFGHTGSIHELFRGREFTLGKLDSTAIIPVLRAHT 302 >gi|54310437|ref|YP_131457.1| oligoribonuclease [Photobacterium profundum SS9] gi|59798036|sp|Q6LM23|ORN_PHOPR RecName: Full=Oligoribonuclease gi|46914878|emb|CAG21655.1| putative oligoribonuclease [Photobacterium profundum SS9] Length = 181 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 11/127 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + + A + D Q + V ++ L D Sbjct: 6 QNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWCTNT 65 Query: 61 TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 T ++ + E + R+ F I N+I D + Sbjct: 66 H--TNSGLVERIRQSKFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EQYFHYR 130 >gi|16273602|ref|NP_439857.1| oligoribonuclease [Haemophilus influenzae Rd KW20] gi|260581056|ref|ZP_05848878.1| oligoribonuclease [Haemophilus influenzae RdAW] gi|1176352|sp|P45340|ORN_HAEIN RecName: Full=Oligoribonuclease gi|1574570|gb|AAC23360.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092296|gb|EEW76237.1| oligoribonuclease [Haemophilus influenzae RdAW] Length = 182 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 193 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 64/206 (31%), Gaps = 30/206 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63 + D ET G + A D + A V + D + FF +P + + A+ TGI Sbjct: 2 VVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTGI 61 Query: 64 TPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYDS 117 A+ + + R + + ++ +N FD + R Sbjct: 62 KLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMKR 121 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAH 175 + S +D + Y + L A GI+ AH Sbjct: 122 NPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREAH 162 Query: 176 DAKADVYATLALVWLIREKKPKLFEY 201 A+ D T L I + ++ + Sbjct: 163 SARYDTEKTAELFCGIVNRWKEMGGW 188 >gi|300173608|ref|YP_003772774.1| DNA-directed DNA polymerase III subunit epsilon [Leuconostoc gasicomitatum LMG 18811] gi|299887987|emb|CBL91955.1| DNA-directed DNA polymerase III, epsilon chain (Putative) [Leuconostoc gasicomitatum LMG 18811] Length = 177 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 52/187 (27%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + A V + ++ + + G+ Sbjct: 2 NFIAMDFET--ANHEKYSAVSIAIAIVRDN-QVVDKFYSL---IKPETYFSSRNTAVHGL 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I F ++ +N FD+ N + Sbjct: 56 RESDVIDAPK-FPEIWQIISPLFRDNK--LVVAHNAAFDN---------NILKGTLAHYG 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LLD +R + KL +A GI + H+A D A Sbjct: 104 IEEPHYMLLDTVRTSRKLF----------PKFENHKLNTVANNLGITLDHHHNALDDAVA 153 Query: 184 TLALVWL 190 ++ Sbjct: 154 AANILIY 160 >gi|260437597|ref|ZP_05791413.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876] gi|292809950|gb|EFF69155.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876] Length = 327 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 26/205 (12%) Query: 4 HFVIYDYETF----GRDVA-LD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G++ D + V++D Q I++ P P Sbjct: 2 NYIVFDLEWNQCPDGKEKEIKDMPFEIIEIGAVKLDSQRRVIDTF-AKNIAPGVYQTLHP 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + G T + + GV + + +F I D + Sbjct: 61 VMQDLIGTTMGELVEKGVPFPQAVK---EFMEWCGDDYIFCTWGCMDLTELQRNC----- 112 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 Y N D+ ++ DG + S + A N +++ H Sbjct: 113 -DYYKINLNLPMPLIYYDLQKSYSICYDDGKKRSSLETVT--------ADKNIVQNEAFH 163 Query: 176 DAKADVYATLALVWLIREKKPKLFE 200 A AD T + L+ K + Sbjct: 164 SAFADAEYTAKIFGLMDMDKIYEYT 188 >gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group] gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group] Length = 517 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 27/193 (13%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +D ET + +F + V R+ + S +P D + +V Sbjct: 30 IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVVVGSYATL-VRPGDLGVVSAASVRC 87 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GIT + + ++ G+N +RFD R F Sbjct: 88 NGITRDAVAAAPA-FRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPP 146 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 D L ++ A K+ LA G+ +H + Sbjct: 147 E-----PKGMIDTLPLL------------TQKFGRRAGDMKMASLANYFGLGR-QSHRSL 188 Query: 179 ADVYATLALVWLI 191 DV L ++ Sbjct: 189 DDVRMNLEVLKYC 201 >gi|290968369|ref|ZP_06559909.1| exonuclease [Megasphaera genomosp. type_1 str. 28L] gi|290781556|gb|EFD94144.1| exonuclease [Megasphaera genomosp. type_1 str. 28L] Length = 221 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 50/194 (25%), Gaps = 26/194 (13%) Query: 6 VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 V D+E D + V++D ++I + + + C +Y A Sbjct: 4 VFVDFEMNPIDRRHQEARRICQGEIIEIGAVKLDEDGKEIGAYKEYIC---PEYTSQMNA 60 Query: 58 V--FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +TGIT A F F + N + Y + N + Sbjct: 61 TCQALTGITMDML----TPAAHFQTVFAHFLAWC--------NEDAPNAYEMYAWSENDW 108 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNA 174 S + + + + + + L G Sbjct: 109 HQLTCEMRLKQSDMNDPQIRWMLDHWQNFQQIFCNLLGLDNVISLDKAVTLLGTSFVGKM 168 Query: 175 HDAKADVYATLALV 188 HDA D T L Sbjct: 169 HDALWDARNTSQLY 182 >gi|52842945|ref|YP_096744.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295579|ref|YP_127994.1| oligoribonuclease [Legionella pneumophila str. Lens] gi|54298733|ref|YP_125102.1| oligoribonuclease [Legionella pneumophila str. Paris] gi|148358519|ref|YP_001249726.1| oligoribonuclease [Legionella pneumophila str. Corby] gi|296108393|ref|YP_003620094.1| putative ACR [Legionella pneumophila 2300/99 Alcoy] gi|59797992|sp|Q5WT59|ORN_LEGPL RecName: Full=Oligoribonuclease gi|59797993|sp|Q5X1E6|ORN_LEGPA RecName: Full=Oligoribonuclease gi|59797999|sp|Q5ZRY0|ORN_LEGPH RecName: Full=Oligoribonuclease gi|166216265|sp|A5IAI0|ORN_LEGPC RecName: Full=Oligoribonuclease gi|52630056|gb|AAU28797.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752518|emb|CAH13950.1| hypothetical protein lpp2797 [Legionella pneumophila str. Paris] gi|53755411|emb|CAH16907.1| hypothetical protein lpl2666 [Legionella pneumophila str. Lens] gi|148280292|gb|ABQ54380.1| oligoribonuclease [Legionella pneumophila str. Corby] gi|295650295|gb|ADG26142.1| putative ACR [Legionella pneumophila 2300/99 Alcoy] gi|307611619|emb|CBX01303.1| hypothetical protein LPW_30001 [Legionella pneumophila 130b] Length = 187 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 9/129 (6%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA- 57 M N+ + D E G + DR + A + D Q + V L +A Sbjct: 1 MKNNQNLIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPVIAVSQPKILLDSMDAW 60 Query: 58 -VFITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFY 111 + ++ L V E++ + +F + N+I D + Sbjct: 61 NTKQHNQSGLVKRVLESNVSESQAEQLTIEFLKQYVDKGKSPMCGNSICQDRRFLYKYMP 120 Query: 112 RNFYDSYRW 120 + Sbjct: 121 ELAAYFHYR 129 >gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC] gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL 1118] Length = 177 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V R E ++ D + + I Sbjct: 2 NFIAMDFET--ANHYPESACSLALVMV-RNTEIVDRFYTV---INPQMPFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + AE +I ++ +N RFD R R Sbjct: 56 TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ Y + + KL ++ A +E + H+A +D A Sbjct: 103 ---------NISEPHYLVIDTLATSKKFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] Length = 203 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + +R + E T F +P + A+ TG Sbjct: 11 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 70 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 71 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 130 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 131 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 171 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 172 HSARYDTEKTAELFCGIVNRWKEMGGW 198 >gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107] gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107] Length = 223 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 57/209 (27%), Gaps = 32/209 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPAD--DYLPDPEAVFIT 61 VI D ET G + D + A +R+D + E F + + A+ T Sbjct: 24 VIVDVETGGFNAQTDALLEIAAVTIRMDEDG-FLHRHETFAFQVEPFEGANIEQAALDFT 82 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 GI P R E + ++ +N FD + R Sbjct: 83 GIDPDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAAVERCNI 142 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 N + + D + L GIE N Sbjct: 143 K------RNPFHPFSVFDTATLAGLAFGQTV-------------LAKACKTAGIEFSNSA 183 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYL 202 AH A D T L LI + L + Sbjct: 184 AHCAAYDAEKTADLFCLIVNRWQTLGGWC 212 >gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13] gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + +R + E T F +P + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174 + S +D + Y + L A GI+ A Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193 Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201 H A+ D T L I + ++ + Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220 >gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW] gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW] Length = 212 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 51/191 (26%), Gaps = 29/191 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D+ET + RV + T + +P + P + I GI Sbjct: 7 LLAIDFET--ANEQRASACSIGLCRV-ENGRVV-RTAEYLIRP-PELRFTPFTIAIHGIR 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + + + ++ +N FD R + + Sbjct: 62 PEDVVDAPE-FPDIWDAMRPELE---GAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYL- 116 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 WP + +L LA GIE + H A +D A Sbjct: 117 --------------CTLVAARRAWPDLEK----HRLNHLARQFGIELEH-HRAGSDARAC 157 Query: 185 LALVWLIREKK 195 A+ Sbjct: 158 AAIALRAMADC 168 >gi|326576077|gb|EGE25996.1| DNA polymerase III subunit epsilon [Moraxella catarrhalis O35E] Length = 120 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V +D ET D++ + V++ +I ++E F + + V I Sbjct: 27 PDELVSFDCETTSLDISEAQIISIGAVKIR--GNRILTSETFEILIKPEGMIQATNVTIH 84 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96 G+ P+ G V+ +F+ I QF + Sbjct: 85 GLRPKGL--SGGVKVDFA--IEQFLQFVGGRPLVG 115 >gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC 15579] gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC 15579] Length = 195 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 12/193 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + D ET G + Q D + E D + A I Sbjct: 1 MKK--IFIDTETTGLEP--GEIIQLTYCVCDINSKGEERVSFSKNFFFDVDYIEESAEAI 56 Query: 61 TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN---FY 115 G + +K +G + + I I +N+ FD + F R + Sbjct: 57 HGFSVEKLKILSNGKKFKDLASEISSDLKDG---IFIAHNVNFDRKFVTAEFNRLDDINW 113 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + + + R P + + ++ + V H Sbjct: 114 IPKEFFCTMEYFKPIVKATTRTGKLKKPRLEETVDFLNIDKKVVVKGAKKLFNCDDVGFH 173 Query: 176 DAKADVYATLALV 188 DA+ DV A ++ Sbjct: 174 DARYDVAALVSCY 186 >gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40] gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40] Length = 231 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 11/118 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEV--FFCKPADDYLPDPEAVFIT 61 VI D ET G + D + A V R+D + E F P + + A+ T Sbjct: 26 VIVDVETGGFNSHTDALLEIAAVTLRMDEDG-VLHRHETFDFHVDPFEGANIEQSALDFT 84 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRN 113 GI R V E I + N ++ +N FD + R Sbjct: 85 GIDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAASNRC 142 >gi|195651097|gb|ACG45016.1| oligoribonuclease [Zea mays] Length = 249 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G D+ DR + A + D + I ++ + Sbjct: 70 LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQSKDCLDNMDEWCKTHHA 129 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYSRN 108 A +T ++ L+ + E + ++ F T ++ N++ D + + Sbjct: 130 ASGLT----ERVLQSELSEHDAEAKVLDFVRKHINSVTPLLAGNSVYVDFLFLKK 180 >gi|27383438|ref|NP_774968.1| hypothetical protein pCTX-M3_009 [Citrobacter freundii] gi|27261291|gb|AAN87632.1| putative protein [Citrobacter freundii] Length = 283 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 46/190 (24%), Gaps = 23/190 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G + D I F + + +A + GI Sbjct: 105 LFLDTETTGLG-NTAEALEIG--LTDAAGRVI-----FETRLKPTVAIEAQAAAVHGIDE 156 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + ++ I N FD + + D Sbjct: 157 PALSGAP-SWPDVALQLRHAIGDRPVIIF---NAPFDTRILKQTGPPHMADP-------- 204 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + A + + + T + A AH A AD T Sbjct: 205 ---ADWLGELTVYCAMELAAGYFGATNRYGTISLASAASQAALAWEGEAHSAIADARMTA 261 Query: 186 ALVWLIREKK 195 +V I Sbjct: 262 GVVNAIAAYH 271 >gi|238762297|ref|ZP_04623269.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638] gi|238699644|gb|EEP92389.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638] Length = 219 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 68/266 (25%), Gaps = 52/266 (19%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A V V I + D +A+ I IT Sbjct: 3 FRVIDTETCGF---EGGIVEIASVDV-VNGVVINPMSDL---VSPDRPISLDAMIIHHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + + +N R W Sbjct: 56 EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R +Y P + + +++ H A D Y T Sbjct: 98 ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 AL+ I R+ + + PL+ + FG R + Sbjct: 145 AALLQRI-------------MRDSGWNAEQMVEVTQQPLLLQTFKFGKYRGKSIEQIAR- 190 Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y ++ + L Sbjct: 191 QDPDYLRWMLTSIADLTPDMRHTLTH 216 >gi|303229628|ref|ZP_07316416.1| exonuclease [Veillonella atypica ACS-134-V-Col7a] gi|302515753|gb|EFL57707.1| exonuclease [Veillonella atypica ACS-134-V-Col7a] Length = 327 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 32/212 (15%) Query: 5 FVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 ++I+D E + Q ++++ E ++S + KP Sbjct: 3 YIIFDLEWNQPYSNDISFMKRARMPLTGEIIQIGAIKLNENLEIVDSF-TMYVKPKYLPH 61 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGIT Q GV Q + + D R Sbjct: 62 MHKHVKALTGITNQDL-NRGVPFRAAYSHFQQ---WCGKDYMLLSWGADDILILRENLLL 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + S + A ++ + + + ++DL E + Sbjct: 118 HKLKSIDYDS-------------WADAQMLYSYQRYGTTQQYSVAHAMEDL--HISSEEL 162 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYD 204 +AH+A D T + + L Sbjct: 163 SAHNALHDAIFTAHICQKLDLPTALLHYDSIR 194 >gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 66/265 (24%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET + A V V + + + +P D +A+ I IT Sbjct: 4 VIDTETCDL---QGGIVEVASVDV-IDGKIV-NPMSHLVRP--DRPISAQAMAIHRITES 56 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 +E E H + +N FD W Sbjct: 57 MVADKPWIE-EIIPLYH------GSQWYVAHNASFDRRV---------LPEMPGEW---- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + + R ++ S S KL E ++ H A D Y T A Sbjct: 97 --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVRTP----EGLHHHRALYDCYITAA 145 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245 L+ I + + + L F + ++ VA Sbjct: 146 LLIDIMNTSGWTPDDMATITGRPALLT---------------TFTFGKYRGKPVSEVADK 190 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y + + L Sbjct: 191 DPGYLRWLYNNLDRMSPELRLTLKH 215 >gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894] Length = 186 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 41/161 (25%), Gaps = 25/161 (15%) Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + AE + I FF +N FD + R Sbjct: 2 HGITDEFLKDK-KPFAEVAEEILAFFGDAK---WIAHNATFDMGFINAELARIGLPPIL- 56 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAK 178 D L + R + P+ L L GI+ H H A Sbjct: 57 ----PERVVDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGAL 98 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 D + + + F +N + + + Sbjct: 99 LDSELLAEVYIEMIGGRQAAFGLSTATSGQNGRGDMAEEDD 139 >gi|18311136|ref|NP_563070.1| exonuclease family protein [Clostridium perfringens str. 13] gi|110799345|ref|YP_696832.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|168205611|ref|ZP_02631616.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|168208856|ref|ZP_02634481.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|168212809|ref|ZP_02638434.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|168215781|ref|ZP_02641406.1| exonuclease family protein [Clostridium perfringens NCTC 8239] gi|169344238|ref|ZP_02865220.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|182623972|ref|ZP_02951760.1| exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|18145819|dbj|BAB81860.1| probable DNA polymerase III epsilon chain [Clostridium perfringens str. 13] gi|110673992|gb|ABG82979.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|169297697|gb|EDS79797.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|170662857|gb|EDT15540.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170713011|gb|EDT25193.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170715467|gb|EDT27649.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|177910865|gb|EDT73219.1| exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|182382180|gb|EDT79659.1| exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 300 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 56/177 (31%), Gaps = 24/177 (13%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + +++++ ++++ + + KP+ + +P+ + ITGIT G+ + Sbjct: 36 YNEIIEIGAIKLNKFMQEVDEFKT-YIKPSVFKVLNPKIIDITGITEDHLKD-GIKFEDA 93 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 + F + I+ + N Y ++ + ++ + Sbjct: 94 MDNLKDFIGEDD--ILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAH-- 149 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIRE 193 S L+ I+ + HDA D T + + Sbjct: 150 ----------------KKSLSLKHALEELKIKMDKSKLHDALNDAVYTAEVFKRLYN 190 >gi|296219709|ref|XP_002756006.1| PREDICTED: ERI1 exoribonuclease 2 [Callithrix jacchus] Length = 687 Score = 54.8 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 12/196 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFHAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFAAGVSEPSTSEVNLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLI 191 D T L W + Sbjct: 214 SGLDDSRNTALLAWKM 229 >gi|255319398|ref|ZP_05360614.1| oligoribonuclease [Acinetobacter radioresistens SK82] gi|262380862|ref|ZP_06074013.1| oligoribonuclease [Acinetobacter radioresistens SH164] gi|255303534|gb|EET82735.1| oligoribonuclease [Acinetobacter radioresistens SK82] gi|262297497|gb|EEY85415.1| oligoribonuclease [Acinetobacter radioresistens SH164] Length = 187 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 20/191 (10%) Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V +D L D Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNILAEGPVLAIHQSDQVLNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN- 108 G + Q+ R + E ++ F T + N+I D + Sbjct: 61 EWNTRQHGQSGLIQRVRRSTLTALEAEQQTIDFLKKWVNPKTSPMCGNSICQDRRFLHRL 120 Query: 109 ----IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 + ++ + S RW + D + +L+ Sbjct: 121 MPELEQFFHYRNLDVSSVKELAKRWRP----EIMSGLKKQASHLAMDDIRDSIRELKYYR 176 Query: 165 LANGIEHVNAH 175 I H N H Sbjct: 177 EYFFITHDNQH 187 >gi|253572302|ref|ZP_04849705.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838077|gb|EES66165.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 188 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 52/187 (27%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R + ++ +P +Y + Sbjct: 9 MKDFAAIDFET--ANGKRTSVCSVGVVIV-RNGKIVKKIY-RLIRPCPNY-YTQWTTAVH 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + I + + +N FD+ + ++ Y + Sbjct: 64 GLTYADTEEA-EDFPDVWAEIKPLI---DGLPLVAHNSPFDE-----GCLKAVHELYEMT 114 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + N + R + +L +A G + N H A AD Sbjct: 115 YPN----YKFYCTCRTSRKVF---------GKELPNHQLHTVAARCGYDLTNHHHALADA 161 Query: 182 YATLALV 188 A + Sbjct: 162 EACAQIA 168 >gi|153005992|ref|YP_001380317.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152029565|gb|ABS27333.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 213 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 52/189 (27%), Gaps = 15/189 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D D V V ++ +P +V + Sbjct: 29 YWAIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAHQLV 88 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + +++ D + R F R Sbjct: 89 SNDFEAAP-PLGDVLPEVER---RAREGALLFHHAAIDVAFLRRDFARTGL--------- 135 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 ++D R ++ P+R + L G+ AHDA +D AT Sbjct: 136 TWPSCPVVDTARL--LVRHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIAT 193 Query: 185 LALVWLIRE 193 L +R Sbjct: 194 AELFLALRM 202 >gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1] gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1] Length = 222 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 26/205 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A +R+D + I T F KP + + A+ TG Sbjct: 16 VVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANLEKAALDFTG 75 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P R + E E ++ I+ +N FD + R Sbjct: 76 IDPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERADIK 135 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L ++ + A + + AH Sbjct: 136 RNPFHPFSSFDTASLAGLVFGQTVLAKACE-----------------AASIPFSNSEAHS 178 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 AK D T L + + +L + Sbjct: 179 AKYDTEKTAELFCEMVNRLKRLGGW 203 >gi|82701847|ref|YP_411413.1| oligoribonuclease [Nitrosospira multiformis ATCC 25196] gi|82409912|gb|ABB74021.1| Exonuclease [Nitrosospira multiformis ATCC 25196] Length = 184 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 17/128 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---------PDP 55 + D E G DR + A V D Q E + V ++ L Sbjct: 8 LIWIDMEMSGLSPDRDRILEIALVVTDSQLEVLAEAPVLVLSQSESVLEGMDSWNKSTHA 67 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 ++ + +K G+ EAE + F + N+I D + R Sbjct: 68 KSGLV-----EKVRASGLTEAEVEVHMIAFLQEHISAGVSPMCGNSICQDRRFLARWMPR 122 Query: 113 NFYDSYRW 120 + Sbjct: 123 LEAYFHYR 130 >gi|330983214|gb|EGH81317.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 171 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWS 121 + Sbjct: 153 RNPFH 157 >gi|330937561|gb|EGH41501.1| ribonuclease T [Pseudomonas syringae pv. pisi str. 1704B] Length = 163 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 91 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 92 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 151 Query: 117 SYRWS 121 + Sbjct: 152 RNPFH 156 >gi|330898573|gb|EGH29992.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT] Length = 186 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + D + FF +P + + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWS 121 + Sbjct: 153 RNPFH 157 >gi|302388533|ref|YP_003824355.1| Exonuclease RNase T and DNA polymerase III [Clostridium saccharolyticum WM1] gi|302199161|gb|ADL06732.1| Exonuclease RNase T and DNA polymerase III [Clostridium saccharolyticum WM1] Length = 330 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 31/326 (9%), Positives = 80/326 (24%), Gaps = 32/326 (9%) Query: 2 TNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 +++ D E G+D A++ + V+++ E++ + +P Sbjct: 1 MKDYIVLDLEWNQSAGGKDEAVEHLPFEIIEIGAVKLNEAMEEVGEFK-RLIRPRIYPEL 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + + +T + + +++G E + F + + D + Sbjct: 60 HEKILEVTHMDEKTLIQEGRNFEEAVK---DFLTWCGEEAVFCTWGSMDLTELQRNMAYY 116 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW---PSRDDGATSFKLQDLALANGIE 170 + L ++ + + D A G Sbjct: 117 GILNPFPKPFLYYDVQKLYSLLYGDGKDRQSLDIAVLEQQVMEDRPFHRALDDAHYTGRI 176 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK--------------NQLRKLID 216 K Y + L K +++ Y + LI Sbjct: 177 LYKMDFMKVREYWSTDYYRLPENKDEEVYLVFPGYSKYISRPFETKQDAIGDKTVTDLIC 236 Query: 217 IQNMTPLVHVSGMFGASRSNTALIAPVAWH---PRYKDSVIGCNLSGDMRVFQDLDSVQL 273 + L F ++ + H + + L + Sbjct: 237 CKCNRMLRKKIRWFSVNQKFYTALGCCPEHGHVKGKIRMRRCDDGRVYVVKTMRLVGEEE 296 Query: 274 AKRLFTSHDELKGLVPVPIKEVHLNK 299 ++ +E + + +NK Sbjct: 297 IPEIYEKKEETRKKRVEKTRVRKINK 322 >gi|186475543|ref|YP_001857013.1| oligoribonuclease [Burkholderia phymatum STM815] gi|184192002|gb|ACC69967.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phymatum STM815] Length = 207 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G D DR + A V + +K+ V +D+ L D Sbjct: 18 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIHQSDETLGKMDDWNKNTH 77 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111 G + + V EA+ + RI F P + N+I D + + Sbjct: 78 GRSGLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARWMPELETF 137 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW + A D ++ L Sbjct: 138 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELRYYREHFL 190 >gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] Length = 501 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 13/134 (9%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET G A D + V + + + KP P A I + Sbjct: 290 ICFDLETSGFS-AEDSIIEIGAVEL-IDGCRTGVIFQSYAKPKAQ--IHPRAEEIHQLNN 345 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 +E + F + +N+ FD R Y+ +DN Sbjct: 346 YLLQYSPPIEV----MLCSFMDWVGDSPLIAHNLSFDKRMLLQELVR-----YKIPFDND 396 Query: 126 NSRWDLLDVMRAIY 139 + + + R +Y Sbjct: 397 HICFCTMKYFRKVY 410 >gi|322831149|ref|YP_004211176.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] gi|321166350|gb|ADW72049.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] Length = 184 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 13/36 (36%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D DR + A + D + Sbjct: 7 NLIWIDLEMTGLDPERDRIIEIATLVTDAHLNILAE 42 >gi|311113524|ref|YP_003984746.1| exonuclease [Rothia dentocariosa ATCC 17931] gi|310945018|gb|ADP41312.1| exonuclease [Rothia dentocariosa ATCC 17931] Length = 409 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 53/195 (27%), Gaps = 34/195 (17%) Query: 4 HFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +V D+ET G Q A ++V + ++ + PA+ E Sbjct: 241 TYVAVDFETANSVSGASA-----CQIALIKV-QNGLVVDRLVSYLKPPAELRRF--EFTH 292 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GI+ + E I F + + +N FD + D Y Sbjct: 293 LHGISARTVRVAP-TWVEVLPAITAFI---GSFPVYAHNASFDSKVWQE------LDDYY 342 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + + + + A FKL H A + Sbjct: 343 NVHTVPTHFFCTYRMAKKALPHLENHKLPTVIKACAPKFKL------------KHHKADS 390 Query: 180 DVYATLALVWLIREK 194 D A +V + Sbjct: 391 DAEACAYIVLFFQTY 405 >gi|156844039|ref|XP_001645084.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM 70294] gi|156115740|gb|EDO17226.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM 70294] Length = 263 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 27/136 (19%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST---------------EVFFCKPADD 50 V D E G + D + + D ++ E K + Sbjct: 44 VWIDCEMTGLNHVNDHIIEICCIVTDGDMNVVKDPGTGEDNVYESVIHYDEEVMSKMNEW 103 Query: 51 YLPDPEAVFITGIT--PQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + G + +K L+ + E R + ++ PN ++ N++ D Sbjct: 104 CIDQ------HGKSGLTEKVLKSNKSLSRVQQELIRHVKKYIPEPNKGVLAGNSVHMDRL 157 Query: 105 YSRNIFYRNFYDSYRW 120 + N F + Sbjct: 158 FLINEFPSLIDHLFYR 173 >gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana] gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana] Length = 236 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 29/244 (11%) Query: 2 TNHFVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPE 56 N V +D ET +F + V ++ E++ES +P D + Sbjct: 7 PNEIVFFDLETN--VPNKAGQHFHILEFGAIIVCPKKLEELESFTTLI-QPKDLSVVSIR 63 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + GIT K + + +IH + G+N RFD + + + Sbjct: 64 SSRSDGITRAKVTNAP-SFEDVAEKIHGLLN--GRIWAGHNIRRFD-----CVRIKEAFA 115 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + D L ++ + A + K+ LA G+ H Sbjct: 116 EIGKAAPEPSGIIDSLGLLSDKF------------GKRAGNMKMASLAAYFGLGVQK-HR 162 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 + DV L ++ K I ++ S+ + Sbjct: 163 SLDDVRMNLEVLKHCATVLFLESTLPNHLEGKWHTSSKIMTRSRRNYQIAQRAMPYSKGS 222 Query: 237 TALI 240 + Sbjct: 223 LEKV 226 >gi|319776026|ref|YP_004138514.1| oligoribonuclease [Haemophilus influenzae F3047] gi|317450617|emb|CBY86837.1| oligoribonuclease [Haemophilus influenzae F3047] Length = 182 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|300932778|ref|ZP_07148034.1| oligoribonuclease [Corynebacterium resistens DSM 45100] Length = 215 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 10/128 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A + D + DD L D + Sbjct: 17 DRIVWVDCEMTGLDPDQHVLVEIAVIVTDANLNALAEGIDLVIHATDDELSRMDDFVTKM 76 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYRN 113 G+T Q + AE +++ ++ T + N+I D + Sbjct: 77 HNNSGLTNQ-IKESSLSLAEAEQQVVEYIKQFVPLGRTAPLAGNSIATDRTFIARYMPEL 135 Query: 114 FYDSYRWS 121 + Sbjct: 136 NEYLHYRM 143 >gi|327307324|ref|XP_003238353.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892] gi|326458609|gb|EGD84062.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892] Length = 188 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 17/132 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYL 52 ++ V D E G D A D Q D Q + + + + Sbjct: 7 SDPLVWIDCEMTGLDPANDHILQICCYITDVQLNLLEPEGFEAIVHQPQDVLDRMNAWCI 66 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRN 108 +T L E +R + + T ++ N++ D + Sbjct: 67 DTHGRSGLT----AAVLLSPTTAEEAARGLLAYIKQYVPTQRTALLAGNSVHADRAFLAK 122 Query: 109 IFYRNFYDSYRW 120 Y D + Sbjct: 123 PPYAQVLDWLHY 134 >gi|297665148|ref|XP_002810969.1| PREDICTED: LOW QUALITY PROTEIN: ERI1 exoribonuclease 3-like [Pongo abelii] Length = 261 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 15/194 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 68 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTXHMYVQPVVHPQLTPFCTELTG 127 Query: 63 ITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I DG + R+ ++ + + + D Sbjct: 128 IIQAMVEMDGQPSLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKV 176 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180 G ++ L V + + L D+ ++H H D Sbjct: 177 MLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDD 236 Query: 181 VYATLALVWLIREK 194 ++ + + Sbjct: 237 CKNIANIMKTLAYR 250 >gi|269137702|ref|YP_003294402.1| hypothetical protein ETAE_0344 [Edwardsiella tarda EIB202] gi|267983362|gb|ACY83191.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557757|gb|ADM40421.1| Oligoribonuclease [Edwardsiella tarda FL6-60] Length = 181 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 12/35 (34%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + D E G D DR + A + D + Sbjct: 8 LIWIDLEMTGLDPQRDRIIEIATLVTDADLNVLAE 42 >gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 506 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 31/193 (16%) Query: 5 FVIYDYET-----FGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV 58 +D ET G+ A +F + V R+ ++ S +P D L Sbjct: 13 IAFFDLETAVPTKSGQPFA---ILEFGAILVCPRKLVELYSYSTL-VQPTDLSLISTLTK 68 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +GIT L +E + ++ G+N RFD R+ F Sbjct: 69 RRSGITRDGVLSAP-TFSEIADEVYDIL--HGRIWAGHNIKRFDCVRIRDAFAEIGLCPP 125 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D L ++ + A K+ LA G+ AH + Sbjct: 126 E-----PKATIDSLSLLSQKF------------GKRAGDMKMASLATYFGLG-DQAHRSL 167 Query: 179 ADVYATLALVWLI 191 DV L +V Sbjct: 168 DDVRMNLEVVKYC 180 >gi|145637656|ref|ZP_01793311.1| oligoribonuclease [Haemophilus influenzae PittHH] gi|145269179|gb|EDK09127.1| oligoribonuclease [Haemophilus influenzae PittHH] Length = 182 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G + +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|126666943|ref|ZP_01737919.1| oligoribonuclease [Marinobacter sp. ELB17] gi|126628659|gb|EAZ99280.1| oligoribonuclease [Marinobacter sp. ELB17] Length = 180 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N V D E G D +R + A + D + I V +D + D Sbjct: 5 NRLVWIDLEMTGLDPEQERIIEMATLITDSELNLIAEGPVLAVHQSDTLMGAMDEWCTRT 64 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + Q+ + EAE ++ F P + N+I D + + Sbjct: 65 HGESGLTQRVTDSRISEAEAEQQTLAFLREHLEPGDSPLCGNSIGQDRRFLVKYMPQLEE 124 Query: 116 DSYRW 120 + Sbjct: 125 FFHYR 129 >gi|120405054|ref|YP_954883.1| oligoribonuclease [Mycobacterium vanbaalenii PYR-1] gi|119957872|gb|ABM14877.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium vanbaalenii PYR-1] Length = 214 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 55/209 (26%), Gaps = 50/209 (23%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D E G D+ DR + A + D + + D + + ++ Sbjct: 6 DELVWIDCEMTGLDLKSDRLIEIAVLVTDSELNILGDGL--------DVVIHADETAMSS 57 Query: 63 ITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106 + Q + G++ E I + T + N+I D + Sbjct: 58 MIDVVAQMHAKSGLIDEVRASTVDLATAEDMVMTYIREHVKQAKTAPLAGNSIATDRGFI 117 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 + D Y S L + Sbjct: 118 ARDMPK--LDDYLHYRMIDVSSIKELCRRWYPRIYFG----------------------- 152 Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKK 195 E AH A AD++ ++ + R+ Sbjct: 153 -QPEKGLAHRALADIHESIRELRYYRQTA 180 >gi|325275518|ref|ZP_08141430.1| exonuclease [Pseudomonas sp. TJI-51] gi|324099350|gb|EGB97284.1| exonuclease [Pseudomonas sp. TJI-51] Length = 183 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 7/121 (5%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V R+ +++ + F +P P +T Sbjct: 5 LVIDLEATTDEGGWPVTEMEVIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120 I+ E + + + + +D ++ + DS Sbjct: 64 HISQADV-DAAAPFREVWASFEHWLGQHREQLQAWVSWGDYDRQQLHQEWHLHGVDSLLR 122 Query: 121 S 121 + Sbjct: 123 T 123 >gi|145633650|ref|ZP_01789377.1| oligoribonuclease [Haemophilus influenzae 3655] gi|145635428|ref|ZP_01791129.1| oligoribonuclease [Haemophilus influenzae PittAA] gi|229845250|ref|ZP_04465383.1| oligoribonuclease [Haemophilus influenzae 6P18H1] gi|144985527|gb|EDJ92343.1| oligoribonuclease [Haemophilus influenzae 3655] gi|145267302|gb|EDK07305.1| oligoribonuclease [Haemophilus influenzae PittAA] gi|229811845|gb|EEP47541.1| oligoribonuclease [Haemophilus influenzae 6P18H1] Length = 182 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G + +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F + I N+I D + Sbjct: 63 ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGSSPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|26990938|ref|NP_746363.1| exonuclease [Pseudomonas putida KT2440] gi|24985960|gb|AAN69827.1|AE016622_4 exonuclease [Pseudomonas putida KT2440] Length = 183 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 21/187 (11%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V R+ +++ + F KP P +T Sbjct: 5 LVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQ-RFVKPRRRPQLTPFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ E ++ G++ + + YD + Sbjct: 64 HISQADVDSA-APFREVWASFERWL--------GHHRGQL-----QAWVSWGDYDRQQLH 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D L + LA + H A D Sbjct: 110 QEWQQYSLDSLLRTLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFC--GQQHRALEDA 167 Query: 182 YATLALV 188 T L+ Sbjct: 168 RNTARLL 174 >gi|260776120|ref|ZP_05885015.1| hypothetical protein VIC_001504 [Vibrio coralliilyticus ATCC BAA-450] gi|260607343|gb|EEX33608.1| hypothetical protein VIC_001504 [Vibrio coralliilyticus ATCC BAA-450] Length = 176 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 39/200 (19%) Query: 3 NHFVIYDYE----------TFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDY 51 N V +D E T G + +D + E ++ + ++ KP D Sbjct: 4 NRIVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVKGEIVKRAQ-YYVKPEQDE 56 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + +TGITP+K + G E + + + F N + DD Sbjct: 57 V-SLFCSQLTGITPRKIEKQGRPLEEVLKSMIKNFGGANKIYASW---GRDDRILAQECQ 112 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + N + + + ++ + N Sbjct: 113 DKGIEMPFKEFINLATLYRVQHRLKDKRIGHKAAQE-----------------AQNIEWE 155 Query: 172 VNAHDAKADVYATLALVWLI 191 H D Y L + Sbjct: 156 GRQHSGYVDAYNLAKLALTM 175 >gi|284006621|emb|CBA71882.1| oligoribonuclease [Arsenophonus nasoniae] Length = 173 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D DR + A + D + Sbjct: 19 NNLIWIDLEMTGLDPQQDRIIEIATIVTDSNLTILSE 55 >gi|282865023|ref|ZP_06274076.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] gi|282559946|gb|EFB65495.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] Length = 201 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 33/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G +A D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEVVR 60 Query: 60 -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G+ + A + +AE + + P + N + D + Sbjct: 61 QMHTASGLLDELAGGTTLADAEERVLAYVREHVKEPGKAPLCGNTVGTDRGFLAR----- 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D D+ V + P A N E Sbjct: 116 --DMQSLEGFLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKNG 154 Query: 174 AHDAKADVYATLALVWLIRE 193 H A AD+ ++ + R+ Sbjct: 155 NHRALADIRDSITELRYYRD 174 >gi|255086407|ref|XP_002509170.1| predicted protein [Micromonas sp. RCC299] gi|226524448|gb|ACO70428.1| predicted protein [Micromonas sp. RCC299] Length = 276 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 30/214 (14%) Query: 4 HFVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEA 57 + D E G + AQ A V + E + KP + Sbjct: 25 TYFSIDVECVATGNEHNARDVAQIALV---------DQFERCLLNVYVKPPEGKKVHSYL 75 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR----- 112 +TGIT GV + + + P ++ NI D + R + Sbjct: 76 TPLTGITEDVLSAHGVPLEDAMQHVRAAL--PPHAVLVGQNIAKDVEWLRLEEGKDFTSL 133 Query: 113 ------NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ-WPSRDDGATSFKLQDLAL 165 D+ + + F + W + + F L Sbjct: 134 VDLAGLCCVDTRTRFVRSVLDIFSFFLTGTHTCGFDSTVWRVWNPQYKSWSVFSQDHLVK 193 Query: 166 A-NGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 G + H+A D ++ L + Sbjct: 194 TLLGSDVGEQHNAALDALKSIRLFNYFNYLQSGQ 227 >gi|260822769|ref|XP_002606774.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae] gi|229292118|gb|EEN62784.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae] Length = 180 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 32/163 (19%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV- 58 M+ V D E G D+ + A + D + A D + P+AV Sbjct: 1 MSRRMVWVDLEMTGLDLDSCHIIEMACLITDDDLNVVAE--------APDLVIHQPDAVM 52 Query: 59 --------FITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 G + + R + E E + Q+ + P C + N++ D Sbjct: 53 DTMNDWCKEHHGKSGLTEAVRRSELSLQAAEYEMLSFVRQY-TPPGVCPLAGNSVHVDKK 111 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 + ++ D+ + + P+ Sbjct: 112 FLEK-------YMPQFMNHLHYRIIDVSTIKELCRRWYPEDYN 147 >gi|38344589|emb|CAD40497.2| OSJNBa0079M09.9 [Oryza sativa Japonica Group] gi|116308941|emb|CAH66068.1| OSIGBa0092O07.3 [Oryza sativa Indica Group] gi|116309117|emb|CAH66222.1| OSIGBa0157N01.8 [Oryza sativa Indica Group] Length = 249 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 7/113 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFIT 61 V D E G D+ DR + A + D + K + + + + D E + Sbjct: 69 KPLVWIDLEMTGLDITKDRILEIACIITDGKLTKRIEGPDLVIRQSKECVNDMNEWCKVH 128 Query: 62 GIT---PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108 +K L+ + E + +++ F T +I N++ D + + Sbjct: 129 HSASGLKEKVLQSDISENDAEKQVLDFIRKYIGSATPLIAGNSVYMDLLFLKK 181 >gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733] gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733] Length = 177 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET A V V + + ++ + V I GI Sbjct: 2 NFIAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + I +F ++ +N FD Sbjct: 56 HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 96 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + + Y + +L + I+ + HDA D A Sbjct: 97 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 153 Query: 184 TLALVWLIREK 194 ++ +K Sbjct: 154 CAEILLYQEKK 164 >gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O] gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O] Length = 217 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P D + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTEKTAELFCGIVNK 201 >gi|255724028|ref|XP_002546943.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis MYA-3404] gi|240134834|gb|EER34388.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 256 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 18/162 (11%) Query: 3 NHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAV 58 V D E G DV D + + D E ++ + + + + Sbjct: 51 KPIVWVDCEMTGLDVFGNDNIIEICCLITDGNLEIVDEEGYESTIYYPKSRLDQMNEWCI 110 Query: 59 FITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 G + K L + +VE E I ++ ++ N+I D ++ F Sbjct: 111 ETHGKSGLTAKVLANPDRKLDIVENELLEYIKKYIPKERDALLAGNSIHMDRFFMMKEFP 170 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153 + + D+ +M Y +PD ++W + Sbjct: 171 KVIEHLHYR-------NIDVSTIMEIGYRHNPDLMKWQPKKK 205 >gi|110803621|ref|YP_698953.1| DNA polymerase III, epsilon subunit [Clostridium perfringens SM101] gi|110684122|gb|ABG87492.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens SM101] Length = 204 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60 + +D ET G Q + + V+ + I F +PEA I Sbjct: 2 KLLFFDTETTGVKP--GSICQLSYILVNTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54 Query: 61 TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G + +K L +G+ + + I+ F I +N++FD + ++ Sbjct: 55 HGFSLEKLYELSEGMYFEDLYADFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111 Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + D+ ++R + ++ + T ++ + A N HD Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHD 171 Query: 177 AKADVYATLAL 187 A+ D AT Sbjct: 172 ARFDTAATYLT 182 >gi|301170471|emb|CBW30078.1| oligoribonuclease [Haemophilus influenzae 10810] Length = 182 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G + +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F + I N+I D + Sbjct: 63 ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGSSPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|297283615|ref|XP_001084714.2| PREDICTED: ERI1 exoribonuclease 2-like [Macaca mulatta] Length = 690 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|30683321|ref|NP_850090.1| exonuclease family protein [Arabidopsis thaliana] gi|83305201|sp|Q9ZVE0|ORN_ARATH RecName: Full=Oligoribonuclease gi|17381150|gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gi|25054981|gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gi|330252818|gb|AEC07912.1| oligoribonuclease [Arabidopsis thaliana] Length = 222 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 15/118 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLP 53 V D E G +V +DR + A + + + T+ K D Sbjct: 43 KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 102 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T K L + E E +++ +F ++ N++ D + + Sbjct: 103 HHGASGLTK----KVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKK 156 >gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia goodfellowii F0264] gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia goodfellowii F0264] Length = 195 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 35/205 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDP 55 M + + +D ET G + ++V + EK+ + F+ + + + Sbjct: 1 MKKNIIFFDVETNG--KMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFR-NEGEPINF 57 Query: 56 EAVFITGITPQKALRD------GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 A+ + G+T + E + +T +NI+FD Sbjct: 58 GAINVNGLTDEVIAEKRENADYPSTFKEDLDSFY--LYCQDTKHFVAHNIKFD------- 108 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 R+F + + + +D++RA +WP + A + + + Sbjct: 109 --RSFIPFPLKNQFDTM--MENIDIVRAGINEYGS-YKWPKLMECAKFYNVP-------M 156 Query: 170 EHVNAHDAKADVYATLALVWLIREK 194 + H++ DV T + + + + Sbjct: 157 DEEQLHESLYDVLITFRVFYKMSKN 181 >gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding [Arabidopsis thaliana] gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana] Length = 255 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 29/195 (14%) Query: 2 TNHFVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPE 56 N V +D ET +F + V ++ E++ES +P D + Sbjct: 7 PNEIVFFDLETN--VPNKAGQHFHILEFGAIIVCPKKLEELESFTTLI-QPKDLSVVSIR 63 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + GIT K + + +IH + G+N RFD + + + Sbjct: 64 SSRSDGITRAKVTNAP-SFEDVAEKIHGLLN--GRIWAGHNIRRFD-----CVRIKEAFA 115 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + D L ++ + A + K+ LA G+ H Sbjct: 116 EIGKAAPEPSGIIDSLGLLSDKF------------GKRAGNMKMASLAAYFGLGVQK-HR 162 Query: 177 AKADVYATLALVWLI 191 + DV L ++ Sbjct: 163 SLDDVRMNLEVLKHC 177 >gi|242780586|ref|XP_002479627.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500] gi|218719774|gb|EED19193.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500] Length = 189 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 9/125 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPAD-------DYLPDP 55 V D E G D D+ Q D Q + IE EV +P + Sbjct: 10 LVWVDCEMTGLDPETDQILQICCFVTDAQLQLIEPNGFEVIVHQPKSKLDAMSQWCIDTH 69 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T ++ I ++ + P T ++ N+I D + Y Sbjct: 70 GRSGLTQAVLASTTDAATASSQLLAYIKRYVTEPRTALLAGNSIHADRAFLAKPPYSLVL 129 Query: 116 DSYRW 120 + + Sbjct: 130 EWLHY 134 >gi|88812805|ref|ZP_01128050.1| oligoribonuclease [Nitrococcus mobilis Nb-231] gi|88789875|gb|EAR20997.1| oligoribonuclease [Nitrococcus mobilis Nb-231] Length = 185 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + + D E G D D + A D++ + ++ L D Sbjct: 7 NLIWIDLEMTGLDTDRDCIIEIATAVTDKELNILAEGPTVAIHQSETVLAAMDKWNTEQH 66 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ + + EA+ +R QF N + N+I D + + Sbjct: 67 GSSGLVERVRQSRIDEAQAEQRTLQFLQQWVPPNASPMCGNSICQDRRFLHRCMPKLEQY 126 Query: 117 SYRW 120 + Sbjct: 127 FHYR 130 >gi|79323145|ref|NP_001031426.1| exonuclease family protein [Arabidopsis thaliana] gi|222423704|dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana] gi|330252819|gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana] Length = 218 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 15/118 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLP 53 V D E G +V +DR + A + + + T+ K D Sbjct: 39 KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 98 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T K L + E E +++ +F ++ N++ D + + Sbjct: 99 HHGASGLTK----KVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKK 152 >gi|90413340|ref|ZP_01221333.1| oligoribonuclease [Photobacterium profundum 3TCK] gi|90325582|gb|EAS42051.1| oligoribonuclease [Photobacterium profundum 3TCK] Length = 181 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 11/127 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + + + A + D Q + V ++ L D Sbjct: 6 QNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWCTNT 65 Query: 61 TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 T ++ + E + R+ F I N+I D + Sbjct: 66 H--TNSGLVERIRQSAFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPEL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 EQYFHYR 130 >gi|326795802|ref|YP_004313622.1| oligoribonuclease [Marinomonas mediterranea MMB-1] gi|326546566|gb|ADZ91786.1| Oligoribonuclease [Marinomonas mediterranea MMB-1] Length = 182 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D ++ + A + D+ + + D Sbjct: 6 ENLVWIDLEMTGLDPEMNTIIEIATIVTDKHLNVLAQGPNLVVHQDKGVMDAMDEWCTTH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + Q+ L + + + F I N++ D + R Sbjct: 66 HGQSGLTQRVLDSAITMEQAEQETIAFLEKYLPAGKSPICGNSVGQDRRFLYKYMPRLEA 125 Query: 116 DSYRW 120 + Sbjct: 126 FFHYR 130 >gi|307730586|ref|YP_003907810.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1003] gi|307585121|gb|ADN58519.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1003] Length = 203 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G + DR + A V + +++ V +D+ L D Sbjct: 19 NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLARMDQWNQNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111 G + + V EA+ + I F P + N+I D + + Sbjct: 79 GRSGLIDRVKASTVSEADATVLIRDFLGAYVPPGKSPMCGNSICQDRRFMARWMPELETF 138 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW + A D ++ L Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191 >gi|56478391|ref|YP_159980.1| oligoribonuclease [Aromatoleum aromaticum EbN1] gi|81821041|sp|Q5P0T5|ORN_AZOSE RecName: Full=Oligoribonuclease gi|56314434|emb|CAI09079.1| oligoribonuclease [Aromatoleum aromaticum EbN1] Length = 183 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 NH + D E G DR + A V D Q + V D L D Sbjct: 5 QNHLIWLDMEMTGLQPDSDRIIEIAIVITDSQLNTVAEAPVIAVHQPDSVLDAMDEWNRN 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + + EA+ ++ F +T + N+I D + Sbjct: 65 THGKSGLTDRVKASLIGEADAEAQMLAFLQQHVPAHTSPMCGNSICQDRRFMARYMPHLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AWFHYR 130 >gi|289672571|ref|ZP_06493461.1| oligoribonuclease [Pseudomonas syringae pv. syringae FF5] Length = 178 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEIATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLHRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|323526920|ref|YP_004229073.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1001] gi|323383922|gb|ADX56013.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1001] Length = 203 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61 + V D E G D DR + A V + +++ VF +D+ L D Sbjct: 19 NLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMVEGPVFAIHQSDETLAKMDQWNQNTH 78 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111 G + + V EA+ + I F P + N+I D + + Sbjct: 79 GRSGLIDRVKASTVSEADATVLIRDFLGAYVPPGKSPMCGNSICQDRRFMARWMPELETF 138 Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 ++ + + RW + A D ++ L Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191 >gi|194290059|ref|YP_002005966.1| membrane linked exonuclease [Cupriavidus taiwanensis LMG 19424] gi|193223894|emb|CAQ69903.1| putative membrane linked exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 248 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 42/184 (22%), Gaps = 32/184 (17%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVD---RQWEKIESTEVFFCKPADDYLPDPEA 57 M I ET G A D P + V+ R + ++ A Sbjct: 1 MPMRVAIVSTETTGLTPA-DEPVSIGLLLVEVSPRAGGLLREVAEYYGSQEPTVPISAAA 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G+T + R I + ++ + F+ Sbjct: 60 TDTHGLTADMLRGR-RFDLGAIRAIID-----DADVLVAHGAAFNARMLEK--------- 104 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 +L +R S+ A + KL L I A Sbjct: 105 -------------VLPGIRDKRWRCSVRQVRWSQYFHAANHKLDTLCEQLHIFRPRPQVA 151 Query: 178 KADV 181 D Sbjct: 152 LDDC 155 >gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016] gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016] Length = 217 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + EA+ G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTEKTAELFCGIVNK 201 >gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy] gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy] Length = 197 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 30/219 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 ++V D+ET + A R D + +++ + P A + + Sbjct: 2 NYVAIDFET--ANGYPGGACSVALARFDEEGMLLDTYYSLIHPKHPYFDPSMTA--VHQL 57 Query: 64 TPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 ++ L E + ++ F ++ +N FD + F ++ + ++ Sbjct: 58 KDEECLAAP--EFDVIWPQMRDFI---GKDLLVAHNAVFDMGVLKGCFEVYDLEARQMTY 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 L + R ++ S+KL L G+E+ AH A D Sbjct: 113 ------LCTLTIARKVW-------------PKMLSYKLSYLVDYYGMEY-QAHYALDDAI 152 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 ++ + L + + Sbjct: 153 MCGKMMHKLCYGHLYEMLDLRRFLITKGIEPKFIENQRK 191 >gi|227487300|ref|ZP_03917616.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227542721|ref|ZP_03972770.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51866] gi|227092726|gb|EEI28038.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227181487|gb|EEI62459.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51866] Length = 312 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 8/100 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + F+ +T G + R V D + +++ P P + Sbjct: 1 MQDPFIALTIQTTGLHPSTARIVTIDAVTFDAEGTPVDTFFT---MVNPVTDPGPR--HL 55 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100 G+ + F +++ +I +N + Sbjct: 56 HGVPRAEVEAA-RPFGHFLKKLCTLLD--GRTLITHNAPQ 92 >gi|296129190|ref|YP_003636440.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena DSM 20109] gi|296021005|gb|ADG74241.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena DSM 20109] Length = 229 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 11/117 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAV 58 + V D E G D+ D + A V D + + P + L ++ Sbjct: 24 DRIVWVDCEMTGLDLVHDALVEVAAVVTDSELNVLGDGVDVVIAPPAEALAQMNDFVRSM 83 Query: 59 FIT-GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110 T G+ P+ L GV E ++ ++ + N++ D + Sbjct: 84 HTTSGLLPE--LEHGVTLEEAEAQVLEYVRTWVPDVGKAPLAGNSVGTDKAFLDRHM 138 >gi|227548676|ref|ZP_03978725.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291] gi|227079239|gb|EEI17202.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291] Length = 211 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 30/119 (25%), Gaps = 10/119 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-------KPADDYLPDP 55 + V D E G D + A + D + DD + Sbjct: 10 DRIVWIDLEMTGLDPDKHVIVEVAALVTDADLNILGDGIDIVVHATDAQLAKMDDVVVSM 69 Query: 56 EAV--FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +T IT E + + + + N+I D + R R Sbjct: 70 HTDNGLLTEITASTVSLADA-EDAVLGLVTKHCDPAHPAPLAGNSIATDRSFIRAHMPR 127 >gi|33519554|ref|NP_878386.1| oligoribonuclease [Candidatus Blochmannia floridanus] gi|77416670|sp|Q7VQP7|ORN_BLOFL RecName: Full=Oligoribonuclease gi|33517217|emb|CAD83599.1| oligoribonuclease [Candidatus Blochmannia floridanus] Length = 180 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 18/101 (17%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60 ++ + D E G + DR + A + D + + V + PE+ + Sbjct: 4 DNLIWIDLEMTGLNPERDRILEIATLITDNELSILSEGPVL-------TIYQPESQLLLM 56 Query: 61 ------TGITP---QKALRDGVVEAEFSRRIHQFFSVPNTC 92 T + ++ + E + S + +F C Sbjct: 57 DEWNTYTHSSNGLLKEVRSSKLNECDASILVLKFLKNWVPC 97 >gi|300949122|ref|ZP_07163165.1| exonuclease [Escherichia coli MS 116-1] gi|300451432|gb|EFK15052.1| exonuclease [Escherichia coli MS 116-1] Length = 199 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D+ DR + A + D + Sbjct: 24 NNLIWIDLEMTGLDLERDRIIEIATLVTDANLNILAE 60 >gi|148978953|ref|ZP_01815243.1| hypothetical protein VSWAT3_05721 [Vibrionales bacterium SWAT-3] gi|145962042|gb|EDK27329.1| hypothetical protein VSWAT3_05721 [Vibrionales bacterium SWAT-3] Length = 176 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 55/202 (27%), Gaps = 38/202 (18%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M ++ V+ +D E T G + +D I ++ KP Sbjct: 1 MNHNRVVCFDLEMCCWSENGVGTTG------EIIEVGLAEIDLASGTIVKRAQYYVKPEK 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G + + + F PN + DD Sbjct: 55 DEV-SQFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPNKIYAAW---GRDDLILHKE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + + N + + + + ++ + N Sbjct: 111 CQEKGIEPPFSEFINIATLYRVQNRLKDKRIGHRAAQE-----------------AKNIE 153 Query: 170 EHVNAHDAKADVYATLALVWLI 191 H D Y L + Sbjct: 154 WEGRQHSGYVDAYNLAKLALTM 175 >gi|227510619|ref|ZP_03940668.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190271|gb|EEI70338.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 177 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 28/200 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + A V T F+ + + + GI Sbjct: 2 NFAAMDFET--ANAKRASACSLALAIVRNNQV----THEFYSLINPETDFSWRNINVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 Q E I F+ ++ +N FD+ + R Sbjct: 56 HKQDVANAP-TFPELWDHIAPLFTANK--LVVAHNASFDNSVLKRTLERY---------- 102 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D++ Y + KL + IE + H+A D A Sbjct: 103 ---------DLLLPHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVA 153 Query: 184 TLALVWLIREKKPKLFEYLY 203 ++ +++ + Sbjct: 154 CANILLTQQQQFGNSVLRNF 173 >gi|227503021|ref|ZP_03933070.1| oligoribonuclease [Corynebacterium accolens ATCC 49725] gi|227076082|gb|EEI14045.1| oligoribonuclease [Corynebacterium accolens ATCC 49725] Length = 213 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 6/116 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 + V D E G D + A V D + ++ L ++ + Sbjct: 14 DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGKGIDLVVHATEEELSQMDSFVTEM 73 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYR 112 + ++ + E + + + + N+I D + R R Sbjct: 74 HANSGLDKEIRQSATTIREAEDAVLALINEHCEHPAPLAGNSIATDRTFIRAYMPR 129 >gi|227832962|ref|YP_002834669.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453978|gb|ACP32731.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 205 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 50/185 (27%), Gaps = 21/185 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + + D ET D + V V I+ + + + E + + Sbjct: 24 NLLAVDMETTSLDPRRGKIVSIGWVPV--NGGVIDLSGAGYTVVRGAQV--AEDAHVHLL 79 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T Q+ + G ++ Q + + + + Sbjct: 80 T-QEVIDAGEELDSAVAQLRQALQ---GRALLAHFAALEVGFIEAAS---------REVF 126 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R ++D +P +D +L + G+ +H+A +D A Sbjct: 127 GQRPRLSVVDTFALERRHMERMGTYPRGED----LRLPRVRARYGLPRYGSHNALSDALA 182 Query: 184 TLALV 188 L Sbjct: 183 CAELY 187 >gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3] gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3] Length = 175 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 43/187 (22%), Gaps = 31/187 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET G A R+ + P+ L I G+T Sbjct: 9 VAIDFETSG--YAAHSACAVGLARI-EDGRVTDCFYRLLRPPSARVLF----TEIHGLTW 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 A+ + +N FD + Sbjct: 62 PMLRDAP-SFAQAWPEAGAIL--CGAHFLLAHNASFDRRVLLACCRAAGLPAPEAP---- 114 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ R S KL + GI H+A +D A Sbjct: 115 ----------------FLCTLKGSRRSLPLPSKKLNLVCEYFGIAL-KHHNAASDAQACA 157 Query: 186 ALVWLIR 192 + +R Sbjct: 158 EVYLRLR 164 >gi|152996651|ref|YP_001341486.1| oligoribonuclease [Marinomonas sp. MWYL1] gi|150837575|gb|ABR71551.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 185 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 13/37 (35%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D D + A V D+ + Sbjct: 6 ENLVWIDLEMTGLDPETDTIIEIATVVTDKHLNVLAK 42 >gi|118366139|ref|XP_001016288.1| exonuclease family protein [Tetrahymena thermophila] gi|89298055|gb|EAR96043.1| exonuclease family protein [Tetrahymena thermophila SB210] Length = 559 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 79/267 (29%), Gaps = 24/267 (8%) Query: 21 RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 +F V +D R+ E I+ F +P + P +TGIT ++ E Sbjct: 80 EIIEFPIVVIDLRKKEIIDRFHSF-VRPTQYPILTPFCTKLTGITQEQVDSAP-TLPEVL 137 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + + +F + + + N DS ++ + + + V Sbjct: 138 KEVDRFLEK------------YIKDGLQKVSVLNDCDSDIRNFLRKETTFKGIPVKPVFK 185 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 F +P + + L+ H D + I ++ Sbjct: 186 EFIDLRRIFPVKISEKPTNIDHMLSCVGLTFEGVKHCGLDDATNIARVALEIAKRDYIYT 245 Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259 E+L ++ + N H+ + + + + H K + NL Sbjct: 246 EHLKEH--------MYPYDNPHYYEHLVIIATQPKMKNNVEIAMIAHDLRKGKTLWNNLG 297 Query: 260 GDMRVFQDLDSVQLAKRLFTSHDELKG 286 Q++ +L + L ++ Sbjct: 298 NKSVKKQEMK-KELFEFLDKVGIDINN 323 >gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] Length = 290 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 47/180 (26%), Gaps = 29/180 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D ET + + Q + ++E P D + DP V + GI Sbjct: 3 FVSIDVET--ANPDMASICQIGIACFNNG--QLEREWSSLVNPRDYF--DPINVSVHGIN 56 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E I S + + FD ++ D W Sbjct: 57 ETSVSSAP-SFEEIYHEIRSLLS--GKICVSH--THFDRISMDKAIRKHSLDPIDVVW-- 109 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 LD R + + L ++ G E HDA D A Sbjct: 110 -------LDSARIAR--------RAWEECAWKGYGLANVCKIIGFEF-KHHDALEDAKAC 153 >gi|253580938|ref|ZP_04858200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847780|gb|EES75748.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 319 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 42/344 (12%), Positives = 87/344 (25%), Gaps = 45/344 (13%) Query: 4 HFVIYDYET----FGRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G+ DR + V+V+ + E + KP Sbjct: 2 NYIVFDLEWNQNPSGKKTRNDRLPFEIIEIGAVKVNSKKEITDHFH-RLIKPQVYKWIHD 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + + ++ GV + + +F + D + Sbjct: 61 SIHEVIHVDYKDLMK-GVPFEQA---VREFIDWCGEDWYFFTWGNQDVMELQRNMKFYGL 116 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 L + S H Sbjct: 117 LDLLPGPVTYYDVQKLYSISYDDGTHRCALEHAIDELKIEKSRGF--------------H 162 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF----- 230 A AD + T ++ I L Y+N + + I I +VS F Sbjct: 163 RALADAWYTAKVLEKINNIIIINHPSLDVYQNPKKKKDEIHISYPDHDKYVSREFATRER 222 Query: 231 -GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289 R T+ PV P + + +V+ + + + + Sbjct: 223 IMKDREVTSTRCPVCHLPAKRK---LRWFMNNPKVYYSISNCEEHGLIRGK--------- 270 Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ 333 + I++ K + + + E E + L R Sbjct: 271 IRIRKTEDEKYFAVKTLRFTDTEEAEELRERKEVLRLRRKLKRS 314 >gi|303232128|ref|ZP_07318831.1| exonuclease [Veillonella atypica ACS-049-V-Sch6] gi|302513234|gb|EFL55273.1| exonuclease [Veillonella atypica ACS-049-V-Sch6] Length = 327 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 32/212 (15%) Query: 5 FVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 ++I+D E + Q ++++ E ++S + KP Sbjct: 3 YIIFDLEWNQPYSNDISFMKRARMPLTGEIIQIGAIKLNENLEIVDSF-TMYVKPKYLPH 61 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGIT Q GV Q + + D R Sbjct: 62 MHKHVKALTGITNQDL-NRGVPFRVAYSHFQQ---WCGKDYMLLSWGADDILILRENLLL 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + S + A ++ + + + ++DL E + Sbjct: 118 HKLKSIDYDS-------------WADAQMLYSYQRYGTTQQYSVAHAMEDL--HISSEEL 162 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYD 204 +AH+A D T + + L Sbjct: 163 SAHNALHDAIFTAHICQKLDLPTALLHYDSIR 194 >gi|269123136|ref|YP_003305713.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] gi|268314462|gb|ACZ00836.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] Length = 426 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 28/214 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G D Q + + D + + D +A I I+ Sbjct: 43 IILDVETTGIRKN-DEILQLSII--DIMGNVVFDKYMKPKYVNDWD----DAFKIHNISH 95 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + ++ + + IIGY + R Sbjct: 96 EMVKNKKYISY--YKKDIEKILKKHKLIIGYEVNSDIAFLRRAGIELK------------ 141 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +++ I + + D L D A ++ NAHDA +D ATL Sbjct: 142 ------SNIVLDIAYLFSLLFENENLIDRKIRPSLLDAAKFYNLDF-NAHDALSDCIATL 194 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 I +K + E+ YD + L + ++ Sbjct: 195 HCFKSILVEKKEKLEFKYDVQVMKFLEEENKVEE 228 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 27/203 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G D Q + + D + EK+ + + EA I I Sbjct: 251 IILDLETTGIR-ENDEIIQLSII--DIKGEKLFNEYFKPINVTEWE----EAYKIHNIGK 303 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + E+ +I +T + I FD + + Sbjct: 304 EMLEDK-LTIEEYREKIQNILD--STDYMIGYGIDFDYKLLQRQGF----------NVEH 350 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + D+ D + + D KL + + G + H++ D +ATL Sbjct: 351 IKKVDVSD-------YFKYIYRKIFNDPKLKRPKLIECSNYYGFKDRGFHNSLTDCFATL 403 Query: 186 ALVWLIREKKPKLFEYLYDYRNK 208 I + + + N Sbjct: 404 VSYKGIYKYMLEELSDRNECENN 426 >gi|306825308|ref|ZP_07458650.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432744|gb|EFM35718.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 197 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 32/194 (16%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E + Q + VR + ++I + + + A +TG Sbjct: 7 YIAFDLE---FNQYEGVTHLIQVSAVRF-QNGQEIGAFDSYVHTTAP---LKSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + VE + + F N I+GYN + D Sbjct: 60 ITAETLKDAPKVE-QVLKVFQAFV--GNLPIVGYNAAKSDLPILLEHGIDY--------- 107 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + DL D + GI + KLQ +A G H +H++ D Sbjct: 108 -RDQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGF-HGKSHNSLEDAR 156 Query: 183 ATLALVWLIREKKP 196 T + E Sbjct: 157 MTARVYEAFLESDE 170 >gi|270160326|ref|ZP_06188980.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968] gi|308051563|ref|YP_003915137.1| putative exonuclease [Legionella longbeachae NSW150] gi|269987175|gb|EEZ93432.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968] gi|288859988|emb|CBJ13980.1| putative exonuclease [Legionella longbeachae NSW150] Length = 301 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 33/188 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV-----DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D ET G D + + D E + PE I Sbjct: 40 TIIDLETMGMDATQHEIIEIGMLSFSFSNEDGILEIKHTYNELN---DPGKPIPPEITKI 96 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI + + + + + + +I +N +FD + Sbjct: 97 TGIRNEDVSGKAINWTFVFQVLKE------SHLIICHNAQFDRNFLELQTPEEIQKQVT- 149 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 F ++ S KL L G + H A D Sbjct: 150 -----------------SLPFGCTIKDIDWKERDYESSKLDYLNWKLGY-FYDGHRAIND 191 Query: 181 VYATLALV 188 +ATL L+ Sbjct: 192 CWATLNLL 199 >gi|227503970|ref|ZP_03934019.1| oligoribonuclease [Corynebacterium striatum ATCC 6940] gi|227199438|gb|EEI79486.1| oligoribonuclease [Corynebacterium striatum ATCC 6940] Length = 210 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 10/153 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A + D I + L D + Sbjct: 9 DRLVWIDLEMTGLDPKRHVIVEVAAIITDGNLNVIGEGIDLVVHATEAELAEMDDFVTNM 68 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNF 114 + ++ E + + + + N+I D + R R Sbjct: 69 HANSGLDKEIRESTTTLREAEDAVLALIAEHCNPEHPAPLAGNSIATDRTFIRAYMPR-- 126 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 D S L A+ + Sbjct: 127 LDEALHYRMIDVSTIKELSRRWFPRAYYNQPDK 159 >gi|56808338|ref|ZP_00366097.1| COG1199: Rad3-related DNA helicases [Streptococcus pyogenes M49 591] Length = 819 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 27/170 (15%) Query: 35 EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII 94 + I+S E D V +TGIT ++ + + + I+Q CI Sbjct: 37 KIIDSYET---DVNPHESLDEHIVHLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIF 89 Query: 95 GYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG 154 +N++FD + ++ R D +++ + + Sbjct: 90 VAHNVKFDANLLAEALFLEG-------YELTIPRVDTVELAQLFFPRFE----------- 131 Query: 155 ATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYD 204 + L L+ I+ AH A AD AT L + +K L + Sbjct: 132 --KYNLGHLSRQLNIDLAEAHTAIADARATAILFLRLLQKIESLPIECLE 179 >gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 209 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 74/228 (32%), Gaps = 39/228 (17%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET Q + + VD + I + + FF + DP A I G Sbjct: 2 KLLFFDTETTSIKP--GSICQLSYITVDASTKPQITTGKNFFFTVDE---MDPSAKEIHG 56 Query: 63 ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + +K L DG + + F + + +N+ FD + ++ D Y Sbjct: 57 FSLEKLYELSDGQYFEDLVPEFLEDFMTAD--FLIGHNVNFDVRFLKHELLSLGEDFYP- 113 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE---------- 170 + A+ D + P + + KL ++ I Sbjct: 114 ------------KNVFCTMAYYRDICKIPKANGEIKNPKLSEVIDWLNISSNQIVETSEK 161 Query: 171 ----HVNAHDAKADVYATLALVWL--IREKKPKLFEYLYDYRNKNQLR 212 N HDA+ D AT V + PK + RN N L+ Sbjct: 162 LFEGSGNYHDARFDTAATYLTVIEGLKKGHFPKGYFSNLLARNSNGLK 209 >gi|71650409|ref|XP_813903.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70878830|gb|EAN92052.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 394 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 47/196 (23%), Gaps = 21/196 (10%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59 ++ D E D +F GV +D + +++ F P Sbjct: 85 IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRNPVLSEFCKK 144 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ + + + F T IG D + + Sbjct: 145 LTGISQEDVDNAPG-----LPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSI 199 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R ++ LD+ + L+ + L H Sbjct: 200 LRDHVSFPGIFYEYLDIRTTFA------HHFNRGAPIKLDAMLRRMRLRF---EGRPHCG 250 Query: 178 KADVYATLALVWLIRE 193 D L + Sbjct: 251 FDDAVNIARLAVAMMR 266 >gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546] gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546] Length = 219 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 65/217 (29%), Gaps = 27/217 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D + + ST F +P + + EA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEGANLEKEALDFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDHSFVMEASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + ++ AH Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------TAGMEFDNKEAH 182 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 A D T L I K L + + ++ Sbjct: 183 SALYDTQKTAELFCGIVNKWKALGGWPLIEADAESIK 219 >gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145] gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145] Length = 219 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 31/199 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + + + P + D ++ G Sbjct: 23 VVVDVETAGFNAQTDALLEIAAIPIVYNEEGQFVPGQAYHAHINPFEGANLDRRSLEFIG 82 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + +++ N ++ +N FD + + R Sbjct: 83 IDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQAAIARTG 142 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + + D + + L + GIE Sbjct: 143 -----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LAKSCIQAGIEFDGK 184 Query: 173 NAHDAKADVYATLALVWLI 191 AH A D T L I Sbjct: 185 EAHSALYDTQKTAELFCYI 203 >gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101] gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101] Length = 302 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + V E F KP + P ++I GI Sbjct: 3 FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E + I + + ++ +N FD R Sbjct: 58 PEDVENE-RTFNEIWKEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D D+ + ++ + + + KL ++ A G E + H D A Sbjct: 97 --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153 Query: 185 LALV 188 ++ Sbjct: 154 ANIL 157 >gi|194366202|ref|YP_002028812.1| oligoribonuclease [Stenotrophomonas maltophilia R551-3] gi|194349006|gb|ACF52129.1| Exonuclease RNase T and DNA polymerase III [Stenotrophomonas maltophilia R551-3] Length = 190 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 + D E G D D + A V D Q + F L EA+ Sbjct: 9 ERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAEGPEFAI---HHPLETLEAMDEWN 65 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 + Q+ + V A+ + F + + N+I D + R Sbjct: 66 RNQHRRSGLWQRVVDSTVTLAQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQMPR 125 Query: 113 NFYDSYRW 120 + Sbjct: 126 LEKYFHYR 133 >gi|28493373|ref|NP_787534.1| oligoribonuclease [Tropheryma whipplei str. Twist] gi|81839131|sp|Q83GA7|ORN_TROWT RecName: Full=Oligoribonuclease gi|28476414|gb|AAO44503.1| oligoribonuclease [Tropheryma whipplei str. Twist] Length = 184 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 15/117 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58 +H V D E G + D + A V D+ ++ P+ + L A+ Sbjct: 7 PSHLVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEAL---GAMDNY 63 Query: 59 -----FITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRN 108 ++G+ + + V EA+ + ++ + I+ N+I D + Sbjct: 64 VARMHRVSGLLDELSNGVPVSEAQAM--VKEYITKHVKTGGIMSGNSIATDRLFITR 118 >gi|226945053|ref|YP_002800126.1| Exonuclease [Azotobacter vinelandii DJ] gi|226719980|gb|ACO79151.1| Exonuclease [Azotobacter vinelandii DJ] Length = 185 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 7/119 (5%) Query: 2 TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + +++ D E T G D + V+R +++ + F +P L Sbjct: 1 MDKWLVIDLEATTDEGGWPVADMEIIEIGASLVNRNGHELDHFK-RFVRPLRRPLLTLFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFY 115 +T I + + + + G+ + +D + R+ Sbjct: 60 QELTHIAQSDIDSA-TPLPMVWEQFEHWLAPYRPRLAGWTSWGDYDRRQLEQEWRRHGL 117 >gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10] Length = 177 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V + ++ D + + I Sbjct: 2 NFIAMDFET--ANHFPESACSLALVMVRDN-KIVDRFYTV---INPQMSFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE +I ++ +N RFD R R + Sbjct: 56 TADDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNTRFDTNVMRQSLARYNIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + + KL ++ A +E + H+A +D A Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|168702572|ref|ZP_02734849.1| exonuclease [Gemmata obscuriglobus UQM 2246] Length = 183 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 42/173 (24%), Gaps = 30/173 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET D D RV + + V P + + GIT Sbjct: 18 FVAIDFET--ADHGPDSACAIGLARV-ENNKVVRREAVLIRPPRPRVMF----TEVHGIT 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + R + + +N FD D + Sbjct: 71 WPMVQNA-SPFGDVWRGLLPIIE--GAKFLAAHNASFDRRVLHACCIAAGLDVPALPF-- 125 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + + R +A P L + GI ++ H Sbjct: 126 ----VCTVQIARRKWALKPA--------------NLPAVCRRLGIGLIHHHAG 160 >gi|218505674|ref|NP_542394.2| ERI1 exoribonuclease 2 isoform 2 [Homo sapiens] gi|119587240|gb|EAW66836.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_a [Homo sapiens] Length = 328 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +I+S + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|110803333|ref|YP_699430.1| exonuclease family protein [Clostridium perfringens SM101] gi|110683834|gb|ABG87204.1| exonuclease family protein [Clostridium perfringens SM101] Length = 300 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 56/177 (31%), Gaps = 24/177 (13%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + +++++ ++++ + + KP+ + +P+ + ITGIT G+ + Sbjct: 36 YNEIIEIGAIKLNKFMQEVDEFKT-YIKPSVFKVLNPKIIDITGITEDHLKD-GIKFEDA 93 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 + F + I+ + N Y ++ + ++ + Sbjct: 94 MDNLKDFIGEDD--ILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAH-- 149 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIRE 193 S L+ I+ + HDA D T + + Sbjct: 150 ----------------KKSLSLKHALEELKIKIDKSKLHDALNDAVYTAEVFKRLYN 190 >gi|241763728|ref|ZP_04761776.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241367033|gb|EER61418.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 195 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 + V D E G + DR + A V Q E VF AD+ L +A Sbjct: 20 QNLVWLDCEMTGLEPDTDRLLEIAVVVTGPQLEPRVEGPVFAIHQADELLDRMDAWNKGT 79 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K + EA+ ++I F + T + N+I D + R Sbjct: 80 HGRSGLIDKVKASTITEAQAEQQILDFLAQYVPKGTAPMCGNSIGQDRRFLVRYMPRLER 139 Query: 116 DSYRW 120 + Sbjct: 140 FFHYR 144 >gi|116670981|ref|YP_831914.1| oligoribonuclease [Arthrobacter sp. FB24] gi|116611090|gb|ABK03814.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] Length = 211 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 33/123 (26%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------- 49 V D E G D+ D + A + D + + +P D Sbjct: 6 ERIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGDGVDVVIRPDDAALAQMNDFVRDM 65 Query: 50 -------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 D LP G T +A EA I ++ P +G N++ D Sbjct: 66 HTRSGLLDELP-------HGKTMAEA------EAVIMEYIAKWVPDPRKAPLGGNSVGTD 112 Query: 103 DYY 105 + Sbjct: 113 RVF 115 >gi|213161996|ref|ZP_03347706.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 104 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 63 ITPQKALRDGVVEAEFSRRIHQ 84 I P LR V E E I Q Sbjct: 80 IDPSNPLRGAVSEYEALHAILQ 101 >gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571] gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571] Length = 177 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V + ++ D + + I Sbjct: 2 NFIAMDFET--ANHFPESACSLALVMVRDN-KIVDRFYTV---INPQMSFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE +I ++ +N RFD R R + Sbjct: 56 TADDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARYNIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + + KL ++ A +E + H+A +D A Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CAGIL 158 >gi|14714721|gb|AAH10503.1| Exoribonuclease 2 [Homo sapiens] gi|123996651|gb|ABM85927.1| exonuclease domain containing 1 [synthetic construct] gi|123996653|gb|ABM85928.1| exonuclease domain containing 1 [synthetic construct] gi|307684634|dbj|BAJ20357.1| ERI1 exoribonuclease family member 2 [synthetic construct] Length = 328 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +I+S + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|26325030|dbj|BAC26269.1| unnamed protein product [Mus musculus] Length = 688 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ + +F V ++ +IES + +P + + + Sbjct: 37 LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ ++ F Sbjct: 97 TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRN 232 >gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis] gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis] Length = 448 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 54/193 (27%), Gaps = 30/193 (15%) Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKP--ADDYLPDPEAV 58 +D ET +F + V R ++ + F +P + + Sbjct: 14 IAFFDLETT--LPGECEGFAILEFGAILVCPRTLVELHTYATF-VQPAADPSLIFSSSFL 70 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GIT + ++ + +++ + G+N +FD R + Sbjct: 71 RSNGITYDNIVSAP-TFSDIADTVYEILN--GRLWAGHNVQKFDSV-----KIREAFAEI 122 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 D +++ A K+ LA G+ H + Sbjct: 123 GRQPPVPKGVIDTWELL------------THKFGRRAGDMKMASLATYFGLG-KQTHRSL 169 Query: 179 ADVYATLALVWLI 191 DV + ++ Sbjct: 170 DDVRMNVDVLKCC 182 >gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] Length = 302 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + V E F KP + P ++I GI Sbjct: 3 FVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E I + + ++ +N FD R Sbjct: 58 PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D D++ + ++ + + + KL ++ A G E + H D A Sbjct: 97 --KTLDFYDILYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153 Query: 185 LALV 188 ++ Sbjct: 154 ANIL 157 >gi|71891864|ref|YP_277593.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795970|gb|AAZ40721.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 187 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 ++ + D E G + DR + A + D + + Sbjct: 4 DNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSE 40 >gi|306836747|ref|ZP_07469709.1| oligoribonuclease [Corynebacterium accolens ATCC 49726] gi|304567369|gb|EFM42972.1| oligoribonuclease [Corynebacterium accolens ATCC 49726] Length = 213 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 6/116 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 + V D E G D + A V D + ++ L ++ + Sbjct: 14 DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGKGIDLVVHATEEELSQMDSFVTEM 73 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYR 112 + ++ + E + + + + N+I D + R R Sbjct: 74 HANSGLDKEIRQSTTTIREAEDAVLALINEHCEHPAPLAGNSIATDRTFIRAYMPR 129 >gi|74026182|ref|XP_829657.1| exonuclease [Trypanosoma brucei TREU927] gi|70835043|gb|EAN80545.1| exonuclease, putative [Trypanosoma brucei] Length = 366 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 19/87 (21%), Gaps = 5/87 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTE--VFFCKPADDYLPDPEAVFIT 61 V D ET G D A V F A + Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWELSGRSFHRLVKPTKKVSSSAYRVH 163 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV 88 +T + R A + F S Sbjct: 164 KLTSKVLERQP-PFAAILPDLAAFLSD 189 >gi|329116993|ref|ZP_08245710.1| DNA polymerase III, epsilon subunit [Streptococcus parauberis NCFD 2020] gi|326907398|gb|EGE54312.1| DNA polymerase III, epsilon subunit [Streptococcus parauberis NCFD 2020] Length = 198 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 30/208 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ +D E F Q + ++ + ++++S + + +TGI Sbjct: 6 NYIAFDLE-FNTVDDKSHLIQLSAIKC-QNHKEVDSFDTYVYTVVP---LQSFINGLTGI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T K + I F S +IGYN+ + D N D Sbjct: 61 TADKIAGAPK----VDQVISDFTSFVGDLSLIGYNSHKSDLPILAE----NGLD------ 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + DL D + +GI + KL +A GI+ H++ D Sbjct: 107 LTSQYKVDLYDEAFERRSTDLNGIA---------NLKLTTVADFLGIK-GRGHNSLEDAR 156 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210 T + E + K Sbjct: 157 MTARVYETFLEFDDNKTYLDHQEEEKMS 184 >gi|330804144|ref|XP_003290058.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum] gi|325079812|gb|EGC33394.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum] Length = 526 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 18/208 (8%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + I D ET G + + + ++ E F+ K PE+ I + Sbjct: 243 NIFILDSETTGL-TSNAEIIELSCACLNG--------EAFYRKSNPTISITPESTKINNL 293 Query: 64 TPQKALRD---GVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 T VE EF I Q S + I +N ++D ++ + Sbjct: 294 TSHDLAGHQYWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRISFHLAKST-KALE 352 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177 S+ SR D + + D S+ L +LA I N H + Sbjct: 353 SSFHKTISRIKFFDSINIFKSIKLVLP--VVSDKKKESYSLDNLATFFKINTDGINRHSS 410 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDY 205 DV ++ K K + Sbjct: 411 SGDVLFLFEILLFFFHKNYKDPNNFLKF 438 >gi|319443116|ref|ZP_07992272.1| oligoribonuclease [Corynebacterium variabile DSM 44702] Length = 209 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 10/148 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 T+ V D E G D + + A V D + + ++ +D L D Sbjct: 9 TDRLVWVDCEMTGLDTSRHVLVEIAVVVTDAELKPLDEGIDIVIHATEDELAEMDDFVTN 68 Query: 60 ITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G + + V E I +F + + N+I D + Y Sbjct: 69 MHGSSGLTDEIRASSVSVADAEKRVVEYIRRFVASSGVAPLCGNSIASDRKFI--AKYMP 126 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAF 141 D++ S L + Sbjct: 127 DLDNFLHYRMIDVSSIKELTRRWYPRVY 154 >gi|71417705|ref|XP_810633.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70875194|gb|EAN88782.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 394 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 47/196 (23%), Gaps = 21/196 (10%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59 ++ D E D +F GV +D + +++ F P Sbjct: 85 IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRNPVLSEFCKK 144 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ + + + F T IG D + + Sbjct: 145 LTGISQEDVDNAPG-----LPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSI 199 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R ++ LD+ + L+ + L H Sbjct: 200 LRDHVSFPGIFYEYLDIRTTFA------HHFNRGAPIKLDAMLRRMRLRF---EGRPHCG 250 Query: 178 KADVYATLALVWLIRE 193 D L + Sbjct: 251 FDDAVNIARLAVAMMR 266 >gi|322492440|emb|CBZ27714.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 508 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 63/229 (27%), Gaps = 35/229 (15%) Query: 8 YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D E G D + + ++ T +P +T Sbjct: 93 FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVQPVCGRKQAQGVEELTH 147 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDS---- 117 IT ++G+ E +R QF P I G + + + Sbjct: 148 ITDMMLEKEGIPFVEAWQRFLQFVQTPQPDEIAGSEERILLLSHGGKLADVSLIKWTLEK 207 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176 + D + V+R + P I D S+KL DL + AH Sbjct: 208 FHMELPPSFVFGDTIHVIRDAHRRRPVTI-----DKHPPSWKLVDLVQWLHITPTLPAHR 262 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 A D T ++ LY + ++ + + P Sbjct: 263 AGNDARMT--------------WDALYHTLLRYGDDEMTPREQLVPRFF 297 >gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinnamea P4] gi|319438351|gb|EFV93294.1| oligoribonuclease [Dietzia cinnamea P4] Length = 222 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 16/151 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-------DYLPDP 55 + V D E G D D+ + A + D + +D + D Sbjct: 25 DRIVWIDCEMTGLDTTNDKLVEIAALVTDSDLNVLGEGVDIVIHASDAALDAMVPVVRDM 84 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111 A G+T ++ R V AE + + + + + N+I D + Sbjct: 85 HASS--GLT-EEIRRSTVTVAEAEKAVLDYVRAWVPVAGSAPLAGNSIGTDRGFL--ARD 139 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 +SY S L + Sbjct: 140 MPELNSYLHYRMIDVSSIKELCRRWYPRIYF 170 >gi|254508126|ref|ZP_05120252.1| exonuclease KapD [Vibrio parahaemolyticus 16] gi|219548961|gb|EED25960.1| exonuclease KapD [Vibrio parahaemolyticus 16] Length = 164 Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 12/130 (9%) Query: 12 TFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70 T G + +D + E ++ + ++ KP D + V +TGITP+K + Sbjct: 11 TTG------EIIEVGLAEIDLVKGEIVKRAQ-YYVKPEQDEV-SLFCVELTGITPRKVEK 62 Query: 71 DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130 G E + + + F N + DD + + N + + Sbjct: 63 QGRPLEEVLKSVVKNFGGSNKIFASW---GRDDVVLAKECEAKGIEMPFKEFINLATLYR 119 Query: 131 LLDVMRAIYA 140 + + ++ Sbjct: 120 IQNRLKDKRI 129 >gi|319745762|gb|EFV98059.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae ATCC 13813] Length = 195 Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 32/198 (16%) Query: 5 FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E T G Q + V+ ++I + + +TG Sbjct: 7 YIAFDLEFNTVG---EHSHIIQVSAVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +E F +T +IGYN + D N D Sbjct: 60 ITARDIIGAPKIET-VLTDFQSFV--GDTPLIGYNGHKSDLPLLVE----NGLDLTSQYQ 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DL D + +GI + KL +A GI+ AH++ D Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156 Query: 183 ATLALVWLIREKKPKLFE 200 T + + Sbjct: 157 MTARVYEKFLDLDENKIY 174 >gi|255658382|ref|ZP_05403791.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida DSM 20544] gi|260849714|gb|EEX69721.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida DSM 20544] Length = 241 Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 21/195 (10%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D E G D + +R+ + EVF + +TG+T + Sbjct: 44 FDLEMAGAFP--DDIIEIGAIRLPLGN---DKIEVFRRLIRPRTFINRTVRDMTGLTKED 98 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127 F P ++G+ D R + + Sbjct: 99 LRDK-STLDVILPEFLDFV-DPEDLVVGHAIGDNDLLSINLALIR--MNHKNGTNIRFCP 154 Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187 R+ LD +R + L L + G H A D A+ L Sbjct: 155 RY--LDTVRLAQQLL----------PKRKKYNLIALLESFGWHSKKKHRAFEDALASYVL 202 Query: 188 VWLIREKKPKLFEYL 202 + + E + ++L Sbjct: 203 LECLLEDSAEKPDWL 217 >gi|297698262|ref|XP_002826233.1| PREDICTED: ERI1 exoribonuclease 2-like isoform 2 [Pongo abelii] Length = 691 Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 54/199 (27%), Gaps = 10/199 (5%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R L L GIE H Sbjct: 156 DLGVCLEYECKRKQLFKTSEKSLKDDIRAKSTARLFYRRKPKGLSGALQEVGIEFSGREH 215 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 216 SGLDDSRNTSLLAWKMIRD 234 >gi|237829909|ref|XP_002364252.1| oligoribonuclease, putative [Toxoplasma gondii ME49] gi|211961916|gb|EEA97111.1| oligoribonuclease, putative [Toxoplasma gondii ME49] gi|221507120|gb|EEE32724.1| oligoribonuclease, putative [Toxoplasma gondii VEG] Length = 367 Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 20/122 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G DV D+ + A + D Q + + +++ + Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDGQCKKRIVGPNLIVHASDELLDGMDEWCK---- 247 Query: 57 AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIF 110 G + + + A+ +I +F +G N++ D + Sbjct: 248 --KTHGESGLTAACRKSTLTLADAEEQILEFVQKHVATTRVAPLGGNSVHVDRQFLVKQM 305 Query: 111 YR 112 R Sbjct: 306 PR 307 >gi|29654538|ref|NP_820230.1| oligoribonuclease [Coxiella burnetii RSA 493] gi|153208846|ref|ZP_01947070.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|154707040|ref|YP_001424673.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111] gi|161829936|ref|YP_001597086.1| oligoribonuclease [Coxiella burnetii RSA 331] gi|165921448|ref|ZP_02219636.1| oligoribonuclease [Coxiella burnetii RSA 334] gi|212212380|ref|YP_002303316.1| oligoribonuclease [Coxiella burnetii CbuG_Q212] gi|212218651|ref|YP_002305438.1| oligoribonuclease [Coxiella burnetii CbuK_Q154] gi|37999374|sp|Q83C93|ORN_COXBU RecName: Full=Oligoribonuclease gi|29541805|gb|AAO90744.1| oligoribonuclease [Coxiella burnetii RSA 493] gi|120575697|gb|EAX32321.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|154356326|gb|ABS77788.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111] gi|161761803|gb|ABX77445.1| oligoribonuclease [Coxiella burnetii RSA 331] gi|165916763|gb|EDR35367.1| oligoribonuclease [Coxiella burnetii RSA 334] gi|212010790|gb|ACJ18171.1| oligoribonuclease [Coxiella burnetii CbuG_Q212] gi|212012913|gb|ACJ20293.1| oligoribonuclease [Coxiella burnetii CbuK_Q154] Length = 183 Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 15/130 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 ++ + D E G D DR + A + + + + + + Sbjct: 6 DNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSH 65 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFY 111 A + ++ V E E F + N++ D + Sbjct: 66 HTASGL----LERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMP 121 Query: 112 RNFYDSYRWS 121 R + Sbjct: 122 RLNQFFHYRH 131 >gi|291390710|ref|XP_002711856.1| PREDICTED: exoribonuclease 2 [Oryctolagus cuniculus] Length = 689 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHNQEIIEFPAVLLNTSTGEIESEFHTYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKKIVFSTGVSEPSSSEVQPCTFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|74141341|dbj|BAE35962.1| unnamed protein product [Mus musculus] Length = 636 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ + +F V ++ +IES + +P + + + Sbjct: 37 LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ ++ F Sbjct: 97 TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|61098180|ref|NP_081974.3| ERI1 exoribonuclease 2 [Mus musculus] gi|81888440|sp|Q5BKS4|ERI2_MOUSE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease domain-containing protein 1 gi|60688299|gb|AAH90961.1| Exonuclease domain containing 1 [Mus musculus] gi|74138480|dbj|BAE38055.1| unnamed protein product [Mus musculus] gi|74189274|dbj|BAE22676.1| unnamed protein product [Mus musculus] Length = 688 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ + +F V ++ +IES + +P + + + Sbjct: 37 LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ ++ F Sbjct: 97 TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|327332353|gb|EGE74089.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL097PA1] Length = 210 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 36/199 (18%) Query: 3 NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 FV D+ET G Q A V+V + ++ P E Sbjct: 41 PSFVAVDFETANRMGGVSA-----CQVAMVKV-LDGQIVDRLNTLIRPPKGWDFF--EFT 92 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ++ GI+ + + F + + +N FD R D + Sbjct: 93 YLHGISATDVAEAPG-WTNIANAVSHFV---DGATVYAHNAAFDSRVWRQ------LDEH 142 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177 + + + G ++KL + A + N H A Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189 Query: 178 KADVYATLALVWLIREKKP 196 +D A +V ++ + Sbjct: 190 DSDAEACALIVCELQRRAQ 208 >gi|68535589|ref|YP_250294.1| oligoribonuclease [Corynebacterium jeikeium K411] gi|68263188|emb|CAI36676.1| putative oligoribonuclease [Corynebacterium jeikeium K411] Length = 210 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 40/148 (27%), Gaps = 10/148 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 + V D E G D + A + D ++ A+ L +A + Sbjct: 12 DRLVWVDCEMTGLDPDQHVLVEIAVIVTDADLTPLDEGLDLVIHAAERDLARMDAVVTKM 71 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + ++ + E ++ + + N I D + Y Sbjct: 72 HGESGLTEQIRSSDITLEEAEEQVLDYVKKHVPTAGVAPLAGNTIGADRKFI--NRYMPH 129 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D Y S L + ++ Sbjct: 130 LDQYLHYRMIDVSSLKELARRWYPHVYN 157 >gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] Length = 201 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 50/183 (27%), Gaps = 29/183 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + P + E + +P D + + GI P Sbjct: 4 VAIDFET--ANEQRSSPCAIGLAWI-ENGRIT-EVEHHYIRPI-DMRFSGWNIAVHGIRP 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + R+ + +N FD R Sbjct: 59 ADVEDADA-FPDVLGRLQARIER---ATVIAHNAAFDISVMRRTCELYGLP--------- 105 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D + ++ WP G S KL + G+E HDA D +A Sbjct: 106 FPCFDYICTVQVAKNT------WP----GLPSAKLNAVCDFLGVEF-KHHDAAQDAFACG 154 Query: 186 ALV 188 ++ Sbjct: 155 SVA 157 >gi|117928856|ref|YP_873407.1| oligoribonuclease [Acidothermus cellulolyticus 11B] gi|117649319|gb|ABK53421.1| Exonuclease, RNase T and DNA polymerase III [Acidothermus cellulolyticus 11B] Length = 269 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 13/151 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 MT+ V D E G D+ D + A + D + I KP D+ L P+ V Sbjct: 1 MTDALVWIDCEMTGLDLRSDALIEVAMLITDAELNVISDGIDVVIKPPDEALASMPDVVR 60 Query: 60 -IT---GITPQKALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + G+ + L GV AE + ++ + N I D + Sbjct: 61 QMHTASGLLDE--LPHGVSLAEAEERLLGVLREYVPEAGKAPLCGNTIATDRAFL--ARD 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D+Y S L + Sbjct: 117 MPAVDAYLHYRMIDVSSIKELVRRWYPRVYF 147 >gi|158253677|gb|AAI54112.1| LOC100127672 protein [Xenopus (Silurana) tropicalis] Length = 272 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 81 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 140 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I ++ R+ ++ + S + D Sbjct: 141 IIQDMVDGQP-TLSQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKLM 188 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 189 LPGQCEYLGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNKGMSLQHIGRPHSGIDDC 248 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 249 RNIANIMKTLAHR 261 >gi|120554172|ref|YP_958523.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] gi|120324021|gb|ABM18336.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 279 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 52/219 (23%), Gaps = 32/219 (14%) Query: 5 FVIYDYETF----GRDVALDR-------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 +I D E R +R +F R E ++S F +P + Sbjct: 13 ILIVDLEATCWESSRLPNGERQSIGNMEIIEFGCALATRTGELLDSR-SFLVRPVRNPDL 71 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +TGI+ E R + ++ P +I + +D ++ + + Sbjct: 72 SAFCRSLTGISQAMVNAAP-PYPEVVRALDEWLGQPAESLIWCSWGNYDRHHIQAESEAH 130 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHV 172 S W L LA N Sbjct: 131 GIAPRFLS-----------------CPHLNLKRIWRRSTGQKKKTGLASALAFHNLAFEG 173 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEY-LYDYRNKNQ 210 H D + L+ + + K Sbjct: 174 RPHRGVDDARNIVRLLPFMDWELEAELLRGSLRMSEKEH 212 >gi|299771588|ref|YP_003733614.1| oligoribonuclease [Acinetobacter sp. DR1] gi|298701676|gb|ADI92241.1| oligoribonuclease [Acinetobacter sp. DR1] Length = 188 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%) Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V D L D Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAVHQPDRILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + + +F + N+I D + + Sbjct: 61 EWNTRQHGQSGLIERVRRSKLTALDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQYFHYR 131 >gi|302521659|ref|ZP_07274001.1| oligoribonuclease [Streptomyces sp. SPB78] gi|318057630|ref|ZP_07976353.1| oligoribonuclease [Streptomyces sp. SA3_actG] gi|318077542|ref|ZP_07984874.1| oligoribonuclease [Streptomyces sp. SA3_actF] gi|333024701|ref|ZP_08452765.1| putative oligoribonuclease [Streptomyces sp. Tu6071] gi|302430554|gb|EFL02370.1| oligoribonuclease [Streptomyces sp. SPB78] gi|332744553|gb|EGJ74994.1| putative oligoribonuclease [Streptomyces sp. Tu6071] Length = 198 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M + V D E G +A D + A + D + + +P + Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPE 49 >gi|221487325|gb|EEE25557.1| oligoribonuclease protein, putative [Toxoplasma gondii GT1] Length = 367 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 20/122 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G DV D+ + A + D Q + + +++ + Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDGQCKKRIVGPNLIVHASDELLDGMDEWCK---- 247 Query: 57 AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIF 110 G + + + A+ +I +F +G N++ D + Sbjct: 248 --KTHGESGLTAACRKSTLTLADAEEQILEFVQKHVATTRVAPLGGNSVHVDRQFLVKQM 305 Query: 111 YR 112 R Sbjct: 306 PR 307 >gi|15602765|ref|NP_245837.1| oligoribonuclease [Pasteurella multocida subsp. multocida str. Pm70] gi|13431730|sp|P57885|ORN_PASMU RecName: Full=Oligoribonuclease gi|12721214|gb|AAK02984.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 184 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D +R + A + D+ + V +D+ L + + Sbjct: 5 KQNLIWIDLEMTGLDPESERIIEIATIVTDKHLNILAEGPVLAIHQSDECLAKMNDWCMK 64 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113 G+ ++ + E + F I N++ D + Sbjct: 65 THTENGL-VERVKNSRLTERAAELQTLDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPEL 123 Query: 114 FYDSYRWS 121 + Sbjct: 124 ADYFHYRH 131 >gi|170722729|ref|YP_001750417.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] gi|169760732|gb|ACA74048.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] Length = 181 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 48/187 (25%), Gaps = 21/187 (11%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V R+ +++ + F +P P +T Sbjct: 5 LVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 I+ E R ++ G++ + + YD + Sbjct: 64 HISQANVDSA-APFPEVWARFERWL--------GHHRGQL-----QAWVSWGDYDRQQLL 109 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + D L + LA + H A D Sbjct: 110 QEWQQHELDSLLRNLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFC--GQQHRALEDA 167 Query: 182 YATLALV 188 T L+ Sbjct: 168 RNTARLL 174 >gi|149198226|ref|ZP_01875273.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] gi|149138828|gb|EDM27234.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] Length = 182 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 16/47 (34%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 N D E G D +R + A + D + + I+ P Sbjct: 1 MNKLFWIDMEMTGLDPDENRILEIAILITDHKLDIIDRFHAVIRTPK 47 >gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396] gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396] Length = 218 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 58/200 (29%), Gaps = 30/200 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + V + D E F +P + A+ TG Sbjct: 22 VVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEPPVSFNVEPFAGANIEQAALEFTG 81 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P LRD EA+ + + N I+ +N FD + R Sbjct: 82 IDPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAAAERGDVK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174 N + D + L GI N A Sbjct: 142 ------RNPFHPFSTFDTATLAALAYGHTV-------------LSRACQLAGIPFDNKEA 182 Query: 175 HDAKADVYATLALVWLIREK 194 H A+ D T L I + Sbjct: 183 HSAEYDAMKTAELFCSIVNR 202 >gi|297623751|ref|YP_003705185.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] gi|297164931|gb|ADI14642.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] Length = 177 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 28/186 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G A + A + E + +P L +P A + IT Sbjct: 14 LILDTETTGLKSA--EVIELALLSTR--GEVL---LDTLVRPKVMRL-NPYAARVHRITL 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + + ++ +N W Sbjct: 66 AELADRP-TWPEVLPELRRLAER--ATVLAWNAPFDARMLEATSAA----------WGLP 112 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + R MR G + L +L +H A+ DV L Sbjct: 113 HPRLLFACAMRLYA--RARGRRSYGLHRALADEGLSELLECY-----ASHRARGDVQFVL 165 Query: 186 ALVWLI 191 ++ Sbjct: 166 EVLRAA 171 >gi|319896797|ref|YP_004134991.1| oligoribonuclease [Haemophilus influenzae F3031] gi|317432300|emb|CBY80653.1| oligoribonuclease [Haemophilus influenzae F3031] Length = 182 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G + +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLEPEKERIIEIATIMTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|294634445|ref|ZP_06712981.1| oligoribonuclease [Edwardsiella tarda ATCC 23685] gi|291092155|gb|EFE24716.1| oligoribonuclease [Edwardsiella tarda ATCC 23685] Length = 181 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 13/35 (37%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + D E G D DR + A + D + + Sbjct: 8 LIWIDLEMTGLDPERDRIIEIATLVTDAELNVLAE 42 >gi|163814998|ref|ZP_02206385.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759] gi|158449681|gb|EDP26676.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759] Length = 326 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 28/224 (12%) Query: 1 MTNHFVIYDYETF-------GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 MT ++++ D E G + + V+VD+ I+ KP Sbjct: 1 MTMNYIVMDLEWNQSYNGHMGEHPRMPFEIIEIGAVKVDKNLNIIDEYSSLI-KPKIYKK 59 Query: 53 PDPEA-VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 + + + L G E +F I D + Sbjct: 60 LHSKIRTILN--YDENDLNLGRGFKEVCS---EFLEWCGDNYIFCTWGPMDLTELQTNMD 114 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + D +++IYA + P S + ++ N E+ Sbjct: 115 FYYMDKLPRPLK--------FLNLQSIYASITNQSGSPQTM----SKLEKAVSEMNIPEN 162 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYL-YDYRNKNQLRKL 214 H A D T ++ ++ K K++ ++ Sbjct: 163 EPFHTALNDARYTALVMKEMKVKNINQLYSFDLYIAPKDKAEEI 206 >gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica] Length = 216 Score = 53.7 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 25/198 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + + F P + +PE++ G Sbjct: 23 VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + + + +I +N D + + Sbjct: 83 IDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGFFYRAAIKR--- 139 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + D + + F + AH Sbjct: 140 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPF-----------DGKQAHS 186 Query: 177 AKADVYATLALVWLIREK 194 A D T L + + Sbjct: 187 ALYDTERTAELFCAMVNR 204 >gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] Length = 178 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 53/185 (28%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + V + ++ + + I GI Sbjct: 2 NFIAMDFET--ASPKRYSACSLSLAIVRDN-QIVDEFYSL---INPQTPFNWRNIQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + E + I F ++ +N FD+ + + Sbjct: 56 HERDVANAP-IFPEVWKHIAPF--YTPDKLVIAHNATFDNSV---------LKNTLEHYK 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD +R + KL +A A IE + H+A D A Sbjct: 104 ITPPAYQTLDTLRTSQKLL----------PRLPNHKLNTVADALKIELNHHHNALDDAQA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CADIL 158 >gi|157120016|ref|XP_001653489.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|108875103|gb|EAT39328.1| oligoribonuclease, mitochondrial [Aedes aegypti] Length = 210 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI 60 ++ V D E G +V DR + A V ++ E +E ++ +P + E Sbjct: 33 QHNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 92 Query: 61 TGITP---QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 Q + + + + F C + N I D + + Sbjct: 93 NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 152 Query: 115 YDSYRW 120 + Sbjct: 153 EYLHYR 158 >gi|226942895|ref|YP_002797968.1| oligoribonuclease [Azotobacter vinelandii DJ] gi|226717822|gb|ACO76993.1| Exonuclease [Azotobacter vinelandii DJ] Length = 180 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G + D + A + D + + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLNPERDVIIEMATIVTDSELNILAEGPVIAVHQSDEILAGMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + A R F + N+I D + Sbjct: 64 QHGRSGLTQRVRDSRIDTATAEARTLAFLEQWVPRGKSPMCGNSICQDRRFLARYMPGLE 123 Query: 115 YDSYRWS 121 + Sbjct: 124 AWFHYRH 130 >gi|88855197|ref|ZP_01129862.1| oligoribonuclease [marine actinobacterium PHSC20C1] gi|88815725|gb|EAR25582.1| oligoribonuclease [marine actinobacterium PHSC20C1] Length = 206 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 7/124 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFIT- 61 V D E G DV +D + A V D ++ KP+ D L + Sbjct: 8 LVWIDCEMTGLDVEIDELVEVAVVITDYDLVPVDEGMSIVIKPSADALEHMGEFVTQMHT 67 Query: 62 --GITPQKALRDGVVEAEFS--RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G+ + A + +AEF+ I ++ P + + N I D + R Sbjct: 68 SSGLIEELANGVSLADAEFAVNEYIVKYVPNPRSAPLAGNTIGTDRTFLAKYMPRVDSHL 127 Query: 118 YRWS 121 + S Sbjct: 128 HYRS 131 >gi|330961285|gb|EGH61545.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 180 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +P L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPVRRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T IT + ++ + ++G+ + D +RN Sbjct: 60 RELTHITQSNIDSA-APLTAVWPQFERWLAHHRARVVGWASWGDYDRQQLEEEWRNHQ-- 116 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 LD + ++ L G++ H Sbjct: 117 --------------LDSALSSMPHVNLKQRFAQARHLQKPLGLNSALQLAGMQFSGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|311739312|ref|ZP_07713148.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305610|gb|EFQ81677.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 65 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 F + D ET G + DR + VR D + ++S Sbjct: 31 FAVIDTETTGFNKRYDRIIELTAVRADAYFNPVDS 65 >gi|254295263|ref|YP_003061286.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] gi|254043794|gb|ACT60589.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] Length = 192 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 51/195 (26%), Gaps = 28/195 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET + Q V E + ++ D + GI Sbjct: 10 FIALDVET--ANNDRASICQIGLACVGWDGEIL----IWSTYVNPDVSFSAFNTKLHGIG 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + R+ F + ++ RFD+ + R +W + Sbjct: 64 ADTVRHA-QMFPDVWGRLQPFLKQH---AMVQHS-RFDELAINAACQMHALPLPRLAWTD 118 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 WP + G L L G++ HDA D A+ Sbjct: 119 SVKVAQ---------------QAWP-QFKGNGGHGLSSLKKRLGLKF-KHHDAGEDAGAS 161 Query: 185 LALVWLIREKKPKLF 199 ++ F Sbjct: 162 AQIILRAESVLGHAF 176 >gi|167625547|ref|YP_001675841.1| oligoribonuclease [Shewanella halifaxensis HAW-EB4] gi|167355569|gb|ABZ78182.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] Length = 181 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60 N+ + D E G D A+D+ + A + D++ I V +D+ L D Sbjct: 6 NNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + E + + F S + N+I D + Sbjct: 66 HGESGLVDRVKASTTNEEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYMPALED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|238789017|ref|ZP_04632806.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641] gi|238722781|gb|EEQ14432.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641] Length = 219 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 68/267 (25%), Gaps = 54/267 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + A + VD + + + D +A+ I I Sbjct: 3 FRVIDTETCGL---EGGIVEIASIDVVDG---VLSNPMSDLV--SPDRPISIDAMVIHHI 54 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + ++ + + +N R W Sbjct: 55 TEDMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW- 97 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + R +Y P + + +++ H A D Y Sbjct: 98 -----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYV 143 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T AL+ I + + + PL+ + FG R + Sbjct: 144 TAALLQRI--MQDSGWN-----------ADQMAEITQQPLLLSTFKFGKYRGKSIEQIAQ 190 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y ++ + L Sbjct: 191 -QDPDYLRWMLASISDLTPDMRHTLTH 216 >gi|296283456|ref|ZP_06861454.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium bathyomarinum JL354] Length = 261 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 8/116 (6%) Query: 8 YDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 D ET D A + A V + + E + PE ITG+ Sbjct: 16 VDVETTSLDPATGEIIELAIELVWISHEGEVEAQLGPWSWLNDPGEPLTPEISTITGLHD 75 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + + R++ + + +N RFD + + + S Sbjct: 76 DDLRGQAIDD----RKVRALLGRAD--WLCAHNARFDVQWIDRRYPEFADKPWACS 125 >gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus helveticus DSM 20075] gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus helveticus DSM 20075] gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463] Length = 177 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 28/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + + A V V + ++ D + + I Sbjct: 2 NFIAMDFET--ANHFPESACSLALVMVRDN-KIVDRFYTV---INPQMSFDARNIQVHQI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T AE +I ++ +N RFD R R + Sbjct: 56 TADDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARYNIEEP----- 107 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 Y + + KL ++ A +E + H+A +D A Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153 Query: 184 TLALV 188 ++ Sbjct: 154 CARIL 158 >gi|307150076|ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] gi|306980304|gb|ADN12185.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] Length = 199 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 16/134 (11%) Query: 5 FVIYDYETF------------GRDVALD-RPAQFAGVRVD-RQWEKIESTEVFFCKPADD 50 +++ D E G + + V V+ + + + F KP Sbjct: 10 YLVLDLEATCCELLRSTEGERGTIKRHEMEIIEIGAVMVEKQDLTIVAEFQTFI-KPVRY 68 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + +T IT + + E + + ++ S + + G + ++ Sbjct: 69 PILTNFCKSLTSITQTQVDQAP-SYPEAAILLKKWLSNYSNAVFGSWGDYDRHQFLQDSK 127 Query: 111 YRNFYDSYRWSWDN 124 + + N Sbjct: 128 FHQVPFPIAYPHVN 141 >gi|121607325|ref|YP_995132.1| oligoribonuclease [Verminephrobacter eiseniae EF01-2] gi|121551965|gb|ABM56114.1| Exonuclease, RNase T and DNA polymerase III [Verminephrobacter eiseniae EF01-2] Length = 195 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 19/131 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPD 54 + V D E G DR + A V E I ++ + K Sbjct: 20 QNLVWLDCEMTGLTPDTDRLLEIAVVVTGPNLEPRIAGPVLVIHQSQEWLDKMDAWNK-- 77 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109 G + K G+ EA+ ++I F S + N+I D + Sbjct: 78 ----GTHGRSGLIDKVKASGITEAQAEQQIIAFLSQYVPKGQVPMCGNSIGQDRRFLARY 133 Query: 110 FYRNFYDSYRW 120 + Sbjct: 134 MPELERFFHYR 144 >gi|299532537|ref|ZP_07045927.1| oligoribonuclease [Comamonas testosteroni S44] gi|298719484|gb|EFI60451.1| oligoribonuclease [Comamonas testosteroni S44] Length = 202 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + V D E G + DR + A V + VF +D+ L +A Sbjct: 28 NMVWLDCEMTGLNPDRDRIIEIAVVVSSSDLQIRVEGPVFAIHQSDELLGGMDAWNKGTH 87 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + K + EAE + F + N+I D + + Sbjct: 88 GKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFMERYMPKLNNF 147 Query: 117 SYRW 120 + Sbjct: 148 FHYR 151 >gi|324515366|gb|ADY46181.1| 3'-5' exonuclease eri-1 [Ascaris suum] Length = 402 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 64/213 (30%), Gaps = 14/213 (6%) Query: 5 FVIYDYETFGRDV---ALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D+E D +F V +D R +++ +P + + Sbjct: 150 FVVMDFECTCEDEVYEYEHEIIEFPAVLIDVRNRRIVDTFHS-HVRPRINPKLSEFCSRL 208 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+T + + + + +G+NN R+ F+ Sbjct: 209 TGVTQEMVDNA-LPFVDVFDSFRMWMQSHR---LGHNNARYAFVTDGPWDIAKFFQMQCL 264 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G+ D + AF ++ S L +L + H D Sbjct: 265 QSGLGSVPHDFRHYINIRKAFLNKYLKGHHAQKTNLSGMLSELGMTF---EGREHCGLDD 321 Query: 181 VYATLALVWLI--REKKPKLFEYLYDYRNKNQL 211 +V + + ++ E + +K ++ Sbjct: 322 SKNIARIVIRMLEDRSELRINERIARGSDKRKV 354 >gi|295836748|ref|ZP_06823681.1| oligoribonuclease [Streptomyces sp. SPB74] gi|197697620|gb|EDY44553.1| oligoribonuclease [Streptomyces sp. SPB74] Length = 198 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M + V D E G +A D + A + D + + +P + L Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPGEAL 52 >gi|154249517|ref|YP_001410342.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum Rt17-B1] gi|154153453|gb|ABS60685.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum Rt17-B1] Length = 188 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 26/190 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G D ++ + + + ++ ++ A + I+ Sbjct: 7 YCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEW-IYTSLVNPKVNIQAYAQSVHKIS 65 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 E + ++ I+ ++N +FD + + Sbjct: 66 NSDIENAPE-LDEIISVVRKY---SKDTIMVFHNAKFDLTFLDYAAKEVGQLPLDVYY-- 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D LD+ +A+Y KL+ LA I H H A D + T Sbjct: 120 ----IDTLDISKAVYG---------------RRRKLESLAQEMKISHKVTHRAYDDAFVT 160 Query: 185 LALVWLIREK 194 + + Sbjct: 161 ANVFIRFFDM 170 >gi|325271243|ref|ZP_08137788.1| oligoribonuclease [Pseudomonas sp. TJI-51] gi|324103646|gb|EGC00948.1| oligoribonuclease [Pseudomonas sp. TJI-51] Length = 180 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + F I N+I D + Sbjct: 64 THGASGLTQRVRDSKVGMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|119920012|ref|XP_001253741.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus] gi|297492734|ref|XP_002699843.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus] gi|296471031|gb|DAA13146.1| three prime histone mRNA exonuclease 1-like [Bos taurus] Length = 370 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F+ V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFSVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + + + +++ + + + + + + R Sbjct: 190 TGITQDQVDKAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W + + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWISIQKSYGNFYKVPRSQIKLTIMLEKLGMDYDGWPHSGLDD 298 >gi|195342143|ref|XP_002037661.1| GM18382 [Drosophila sechellia] gi|194132511|gb|EDW54079.1| GM18382 [Drosophila sechellia] Length = 353 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 22/135 (16%) Query: 4 HFVIYDYETFGRDVALD---RPAQF------AGVRVDRQWEK-IESTEVFFCKPA----- 48 F + D ET + + A + ++ E+ + + P Sbjct: 19 TFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLTKKKEEQNQDDQQELPAAPRVLHKL 78 Query: 49 -----DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRF 101 + DPEA ITG++ R+ ++ + ++ I F + C++ +N F Sbjct: 79 NLLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGF 138 Query: 102 DDYYSRNIFYRNFYD 116 D R F + + Sbjct: 139 DFPILRQAFEKLNIE 153 >gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobacterium marinum M] gi|183177160|gb|ACC42270.1| oligoribonuclease Orn [Mycobacterium marinum M] Length = 215 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 26/163 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M V D E G D+ D+ + A + D + D + + + Sbjct: 1 MREELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGV--------DVVIHADDAAL 52 Query: 61 TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + R G+ EA I + P T + N+I D Sbjct: 53 SSMVDVVADMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRS 112 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 + D++ S L + + Sbjct: 113 FI--ARDMPALDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153 >gi|221068763|ref|ZP_03544868.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni KF-1] gi|220713786|gb|EED69154.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni KF-1] Length = 202 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + V D E G + DR + A V + VF +D+ L +A Sbjct: 28 NMVWLDCEMTGLNPDRDRIIEIAVVVSSSDLQIRVEGPVFAIHQSDELLGGMDAWNKGTH 87 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + K + EAE + F + N+I D + + Sbjct: 88 GKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFMERYMPKLNNF 147 Query: 117 SYRW 120 + Sbjct: 148 FHYR 151 >gi|115373916|ref|ZP_01461207.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1] gi|310817902|ref|YP_003950260.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1] gi|115369044|gb|EAU67988.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1] gi|309390974|gb|ADO68433.1| Oligoribonuclease [Stigmatella aurantiaca DW4/3-1] Length = 186 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 13/45 (28%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 FV D E G D + + + E +P + Sbjct: 8 FVWLDLEMTGLDPETCAIIEIGVIITGPDLVPLAEIERVIWQPEE 52 >gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group] Length = 422 Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 29/194 (14%) Query: 5 FVIYDYETF---GRDVALDR-PAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +D ET G R +F + RQ ++ + +P+D + EA+ Sbjct: 23 IAFFDVETSMPWG--PRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVT-EALE 79 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GIT + + IH G+N I FD R F Sbjct: 80 RKGITRGALEDAP-PFCDVADNIHNVL--HGRIWAGHNIISFDSEIIREAFAEIGRSPPE 136 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 D L ++ + A + K+ +LA + H + Sbjct: 137 -----PKGMIDTLPLL------------TQTFGRRAGNMKMANLADYFNLGP-QIHRSLY 178 Query: 180 DVYATLALVWLIRE 193 DV L ++ Sbjct: 179 DVRMNLDVLKCCST 192 >gi|291547443|emb|CBL20551.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus sp. SR1/5] Length = 318 Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 36/315 (11%), Positives = 87/315 (27%), Gaps = 39/315 (12%) Query: 4 HFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++++D E + ++ R + V+++ + E +++ + KP + Sbjct: 2 NYIVFDLE-WNQNPDGRRHPDSRLPFEIIEIGAVKLNEKREIVDTFQCLI-KPKVYHWIH 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + + + G+ RR ++ + + Sbjct: 60 DSIHEVIHVDYHEL-EKGIPFPRAIRRFLEW-------------------CGEEYRFFTW 99 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHV 172 D ++LL +M + + + + S + + A ++ Sbjct: 100 GDQDVMELQRNMKYYNLLKLMPGPVHYYDVQKLFSIKFEDGISRRSLEYATDYLQLPKNR 159 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF-- 230 + H A AD T ++ I E L Y+N I I VS F Sbjct: 160 DFHRALADASYTARILLEIDEACMIRHPSLDVYQNPKSRDSEIYISYTDHDKFVSREFVS 219 Query: 231 ----GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG 286 R+ + + P+ P + + + L + Sbjct: 220 KERLMKDRTMVSTMCPICRCPAKRKIRWFSTNNSKVYYSLALCHEHGPVAGKIRIRKTDE 279 Query: 287 LVPVPIKEVHLNKCP 301 +K + Sbjct: 280 GKYFGVKTLRAEDTE 294 >gi|289620483|emb|CBI52844.1| unnamed protein product [Sordaria macrospora] Length = 180 Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 21/131 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61 V D E G + D + + D Q ++ T V A D + Sbjct: 20 LVWIDCEMTGLNPDQDAIIEIYCLITDEQLNLLDPTGWGAVIHQTKARMDAMDEWCTRVH 79 Query: 62 G------------ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 G +TP++A E I ++ ++ N++ D + R Sbjct: 80 GDSGLTAAVLASTVTPEQAAD------ELLAYIQKYVPNKRIALLAGNSVHADRAFLRKE 133 Query: 110 FYRNFYDSYRW 120 Y D + Sbjct: 134 PYNRVVDHLHY 144 >gi|34534279|dbj|BAC86956.1| unnamed protein product [Homo sapiens] Length = 279 Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +I+S + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|22537889|ref|NP_688740.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae 2603V/R] gi|76799620|ref|ZP_00781737.1| exonuclease [Streptococcus agalactiae 18RS21] gi|77408819|ref|ZP_00785548.1| exonuclease [Streptococcus agalactiae COH1] gi|22534786|gb|AAN00613.1|AE014271_8 exonuclease [Streptococcus agalactiae 2603V/R] gi|76585026|gb|EAO61667.1| exonuclease [Streptococcus agalactiae 18RS21] gi|77172600|gb|EAO75740.1| exonuclease [Streptococcus agalactiae COH1] Length = 195 Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 32/198 (16%) Query: 5 FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E T G Q + V+ ++I + + +TG Sbjct: 7 YIAFDLEFNTVG---EHSHIIQVSAVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +E F +T +IGYN + D N D Sbjct: 60 ITARDIIGAPKIEI-VLTDFQSFV--GDTPLIGYNGYKSDLPLLVE----NGLDLTSQYQ 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DL D + +GI + KL +A GI+ AH++ D Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156 Query: 183 ATLALVWLIREKKPKLFE 200 T + + Sbjct: 157 MTARVYEKFLDLDENKIY 174 >gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria polysaccharea ATCC 43768] gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria polysaccharea ATCC 43768] Length = 408 Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 44/160 (27%), Gaps = 26/160 (16%) Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 +TGI+ + AE + + C++ +N RFD + ++ F+ Sbjct: 10 PIPQFVSGLTGISDGMVADAP-IFAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFH 65 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R L ++ P + L + GI Sbjct: 66 RAGI----------GFSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVV 105 Query: 172 VNAHDAKADVYATLALVWLIREKK--PKLFEYLYDYRNKN 209 + H A ADV A + + + N Sbjct: 106 EDRHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPK 145 >gi|226288880|gb|EEH44392.1| phosphoglucomutase [Paracoccidioides brasiliensis Pb18] Length = 806 Score = 53.3 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 21/134 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-------ADDYL 52 T+ V D E G D D+ Q D + +E E P D + Sbjct: 7 TDPLVWIDCEMTGLDPRTDKIIQICCFITDSNLDLVEPNGFEAVIHYPKSVLDNMNDWCI 66 Query: 53 PDPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYS 106 G T L + + + ++ N++ D + Sbjct: 67 ------KTHGQTGLTAAVLSSTTTPTAAAEGLLAYIKKHVPQKRIGLLAGNSVHTDKAFL 120 Query: 107 RNIFYRNFYDSYRW 120 Y + + + Sbjct: 121 ACEPYADVLEWLHY 134 >gi|320163436|gb|EFW40335.1| REXO2 protein [Capsaspora owczarzaki ATCC 30864] Length = 180 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 14/113 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDPEA 57 + D E G DV+ + + A + D + + + + D A Sbjct: 9 IWVDLEMTGLDVSTETIIEMACIVTDSRGNILAEGPDIIIHQPDEVLDRMNDWCKEHHGA 68 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRN 108 +T AE + F C++ N I D + Sbjct: 69 SGLT----AAVRASTTSLAEAEEVMLAFVREHTSKGCVLAGNTIHMDKRFLDR 117 >gi|289626405|ref|ZP_06459359.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649559|ref|ZP_06480902.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] gi|298486356|ref|ZP_07004418.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159084|gb|EFI00143.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866329|gb|EGH01038.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889890|gb|EGH22551.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] Length = 180 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA + Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I Q ++ + ++ S ++G+ + Sbjct: 60 RELTHI-NQSSIDSAAPLTAVWPQFERWLSHHRARVLGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 Y R+ LD + ++ L G++ H Sbjct: 103 YDRQQLEEEWRYHRLDSALSSMPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFTGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|169634394|ref|YP_001708130.1| oligoribonuclease [Acinetobacter baumannii SDF] gi|169797233|ref|YP_001715026.1| oligoribonuclease [Acinetobacter baumannii AYE] gi|213155973|ref|YP_002318018.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057] gi|215484674|ref|YP_002326909.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294] gi|229577105|ref|YP_001083587.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978] gi|239500755|ref|ZP_04660065.1| oligoribonuclease [Acinetobacter baumannii AB900] gi|293610306|ref|ZP_06692607.1| oligoribonuclease [Acinetobacter sp. SH024] gi|301346492|ref|ZP_07227233.1| oligoribonuclease [Acinetobacter baumannii AB056] gi|301509982|ref|ZP_07235219.1| oligoribonuclease [Acinetobacter baumannii AB058] gi|301594203|ref|ZP_07239211.1| oligoribonuclease [Acinetobacter baumannii AB059] gi|332851262|ref|ZP_08433335.1| oligoribonuclease [Acinetobacter baumannii 6013150] gi|332866131|ref|ZP_08436846.1| oligoribonuclease [Acinetobacter baumannii 6013113] gi|332874063|ref|ZP_08441998.1| oligoribonuclease [Acinetobacter baumannii 6014059] gi|169150160|emb|CAM88054.1| oligoribonuclease [Acinetobacter baumannii AYE] gi|169153186|emb|CAP02276.1| oligoribonuclease [Acinetobacter baumannii] gi|193076335|gb|ABO10985.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978] gi|213055133|gb|ACJ40035.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057] gi|213985933|gb|ACJ56232.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294] gi|292827538|gb|EFF85902.1| oligoribonuclease [Acinetobacter sp. SH024] gi|322506755|gb|ADX02209.1| Oligoribonuclease [Acinetobacter baumannii 1656-2] gi|323516626|gb|ADX91007.1| oligoribonuclease [Acinetobacter baumannii TCDC-AB0715] gi|325124507|gb|ADY84030.1| oligoribonuclease [Acinetobacter calcoaceticus PHEA-2] gi|332730142|gb|EGJ61469.1| oligoribonuclease [Acinetobacter baumannii 6013150] gi|332734772|gb|EGJ65866.1| oligoribonuclease [Acinetobacter baumannii 6013113] gi|332737804|gb|EGJ68696.1| oligoribonuclease [Acinetobacter baumannii 6014059] Length = 188 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%) Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V D L D Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + + +F + N+I D + + Sbjct: 61 EWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQYFHYR 131 >gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 147 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 21/151 (13%) Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 F D D A+ + GIT + + AE + +F I +N FD Sbjct: 10 FHVYLQPDRESDEGAIGVHGITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFD 65 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + N + R S D L + R + + L Sbjct: 66 VGFINNE-FALMGSQDRADITQHCSVLDTLMMARERHPGQRN--------------SLDA 110 Query: 163 LALANGIEHV--NAHDAKADVYATLALVWLI 191 L G+++ H A D + + Sbjct: 111 LCKRYGVDNSGRELHGALLDSEILADVYLAM 141 >gi|300798138|ref|NP_001178043.1| ERI1 exoribonuclease 2 [Rattus norvegicus] Length = 687 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ + +F V ++ +IES + +P + + + Sbjct: 37 LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ ++ F Sbjct: 97 TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYNRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|296824674|ref|XP_002850692.1| oligoribonuclease [Arthroderma otae CBS 113480] gi|238838246|gb|EEQ27908.1| oligoribonuclease [Arthroderma otae CBS 113480] Length = 188 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 9/128 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---------STEVFFCKPADDYL 52 ++ V D E G D A D+ Q D Q +E + + + Sbjct: 7 SDPLVWVDCEMTGLDPANDKILQICCFITDAQLNLLEPAGFEAVVHQPQDVLDRMNAWCI 66 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +T + ++ I ++ T ++ N++ D + Y Sbjct: 67 DTHGRSGLTAASLSSTTTAEEAASDLLAYIKRYVPKQRTALLAGNSVHADRAFLAQQPYA 126 Query: 113 NFYDSYRW 120 + Sbjct: 127 KALGWLHY 134 >gi|33357113|pdb|1J9A|A Chain A, Oligoribonuclease Length = 184 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G D +R + A + D+ + ++ K D Sbjct: 7 KQNLIWIDLEXTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKXNDWC-- 64 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 65 ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 120 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 121 YXPDLADYFHYRH 133 >gi|332139961|ref|YP_004425699.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype'] gi|327549983|gb|AEA96701.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype'] Length = 181 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 10/130 (7%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55 M+ + V D E G D + A + D Q + V +DD L D Sbjct: 1 MSKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQSDDVLNNMDE 60 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 + G + + + E S + F + N I D + Sbjct: 61 WCTRVHGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCGNTIGQDRRFMVKYM 120 Query: 111 YRNFYDSYRW 120 + Sbjct: 121 PELEAYFHYR 130 >gi|163941161|ref|YP_001646045.1| exonuclease [Bacillus weihenstephanensis KBAB4] gi|163863358|gb|ABY44417.1| Exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] Length = 281 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 64/261 (24%), Gaps = 29/261 (11%) Query: 1 MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53 M N HF+++D E V++D + I Sbjct: 1 MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPL 56 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +TGIT + + G + + QF ++ + + + Y Sbjct: 57 TRHTTKLTGITKKDLIGVG-NFPQIIEKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGV 114 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 SR+D+ + Y + PS L Sbjct: 115 ECPCMEKE-----SRFDVQKFVFQAYEELFE--HTPSLQFAVDQLGLT--------WEGK 159 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 H A AD T + + + + + + ++ + + Sbjct: 160 QHRALADAENTANIFLKVYGE-RDINKRYKRHGELELVKNGKLTEKAKKRMRKWVFKELR 218 Query: 234 RSNTALIAPVAWHPRYKDSVI 254 ++ A+ I Sbjct: 219 KNTERPFVWSAFESSDTWESI 239 >gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] Length = 178 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 30/192 (15%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +F+ D+ET G+ + + + R + + + + V I G Sbjct: 2 NFIAMDFETASGKRYSACSL----ALTIVRNNQIADEFYTLINPQTPFFWRN---VQIHG 54 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + E I F ++ +N RFD+ ++ + Sbjct: 55 IHERDVANAP-TFPEVWEHIKGF--YTPDKLVIAHNNRFDNGVLKSTLEHYGIEPPA--- 108 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + LD + + G +++KL + A I+ + H+A D Sbjct: 109 ------YQTLDTVVSSRRLL----------PGLSNYKLNTVCAALNIDLHHHHNALDDAQ 152 Query: 183 ATLALVWLIREK 194 A ++ + Sbjct: 153 ACANILLYQGQH 164 >gi|256787574|ref|ZP_05526005.1| oligoribonuclease [Streptomyces lividans TK24] Length = 196 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 45/201 (22%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFITGIT 64 V D E G ++ D + A + D + + +P + L PE V Sbjct: 2 VWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERALETMPEVVR----- 56 Query: 65 PQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 + G+ EA+ + + P + N++ D + Sbjct: 57 -EMHTASGLLAELDGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGF------- 108 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 D D+ + + P A N E Sbjct: 109 LLRDMATLEGYLHYRIVDVSSIKELARRWYPR-------------------AYFNSPEKN 149 Query: 173 NAHDAKADVYATLALVWLIRE 193 H A AD+ ++A + RE Sbjct: 150 GNHRALADIRESIAELRYYRE 170 >gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] Length = 483 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 24/193 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + +D ET G + D + V + + + +P P + I +T Sbjct: 302 ICFDLETSGV-TSSDTIIEIGAVEL-IDGCRTGVIFQSYAQPKAQ--IHPVSEQIHQLTS 357 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + +E + F + +N+ FD R Sbjct: 358 LQLMSAPPIEI----ILASFMDWVGNSPLVAHNLAFDKRILIQELIRYNIP--------- 404 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +++ + + + + S KL+ N + H A D Sbjct: 405 ---FNIDHICFCTMKYFKKIYNGLNYSLDSISQKLK----INKLLLRKTHGALIDSEILA 457 Query: 186 ALVWLIREKKPKL 198 + + P Sbjct: 458 IIYTHLLIVDPNT 470 >gi|42782602|ref|NP_979849.1| exonuclease [Bacillus cereus ATCC 10987] gi|42738528|gb|AAS42457.1| exonuclease family protein [Bacillus cereus ATCC 10987] Length = 281 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 61/260 (23%), Gaps = 27/260 (10%) Query: 1 MTNH--FVIYDYETFGRDVALD---RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPD 54 M N F+++D E R D V+++ + I Sbjct: 1 MKNTTHFIVFDIERNFRPYKSDDPSEIVDIGAVKIEASTMKVIGEFSEL---VKPGARLT 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +TGIT + + + R QF ++ + + + + Sbjct: 58 RHTTKLTGITKKDLMNVEK-FPQIIERFIQFIGE-DSIFVTWGKEDYRFLVHDCTLHGVD 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 R DL + Y + PS L Sbjct: 116 CPCMEKE-----RRIDLQKFVFQAYEELFE--HTPSLQSAVEQLGLT--------WEGKQ 160 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H A AD T ++ ++ + + + + + + Sbjct: 161 HRALADAENTANILLKAYSERDIT-KRYKRHGELELVENGKLTEKAKKKMRKWVFKEMRK 219 Query: 235 SNTALIAPVAWHPRYKDSVI 254 + A + I Sbjct: 220 NTERPFAWSTFESSDTWESI 239 >gi|312865719|ref|ZP_07725943.1| DNA polymerase III, epsilon subunit [Streptococcus downei F0415] gi|311098840|gb|EFQ57060.1| DNA polymerase III, epsilon subunit [Streptococcus downei F0415] Length = 196 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +++ +D E F + Q + V+ E++ + + +TG Sbjct: 5 ENYIAFDLE-FNTVAGVSHIIQVSAVKF-AGHEEVAHFDSYAYS---SVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT K + +E + F T +IGYN ++ D N D Sbjct: 60 ITADKIAKAPKLE-QVLADFRTFIGE--TPLIGYNALKSDLPLLAE----NGLD------ 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + R D+ + + +GI + +L +A GI +HD+ D Sbjct: 107 LSEHYRVDVFEQAFERRSLDLNGIA---------NLQLHTVAEFLGIS-GRSHDSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + E Sbjct: 157 MTALVYEKFLELDEN 171 >gi|238749568|ref|ZP_04611073.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380] gi|238712223|gb|EEQ04436.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380] Length = 219 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 69/265 (26%), Gaps = 54/265 (20%) Query: 7 IYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G D + A V VD + + + D +A+ I IT Sbjct: 5 VIDTETCGLD---GGIVEIASVDVVDG---VLSNPMSDLV--SPDRPISLDAMVIHHITE 56 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + + ++ + + +N R W Sbjct: 57 EMVEGMPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW--- 97 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L + R +Y P + + E++ H A D Y T Sbjct: 98 ---ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSIPENLYPHRALYDCYVTA 145 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 AL+ I + + + + PL+ + FG R Sbjct: 146 ALLQRI--MQDSGWN-----------AEQMAEMTQQPLLLQTFKFGKYRGKNIEQIAR-Q 191 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y ++ + L Sbjct: 192 DPDYLRWMLASISDLTPDMRHTLTH 216 >gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239] gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 302 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + V E F KP + P ++I GI Sbjct: 3 FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E I + + ++ +N FD R Sbjct: 58 PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D D+ + ++ + + + KL ++ A G E + H D A Sbjct: 97 --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153 Query: 185 LALV 188 ++ Sbjct: 154 ANIL 157 >gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326] gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326] Length = 220 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D + ST F +P + + EA+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEGANIEKEALDFIG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + P LR + E+E + I++ + + II +N +FD + R+ Sbjct: 80 LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMQASERSKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A ++ AH Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMDFDNKEAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 183 SALYDTQKTAELFCGIVNK 201 >gi|322805638|emb|CBZ03203.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog [Clostridium botulinum H04402 065] Length = 549 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 26/42 (61%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF 44 + V++D E+ G ++ D Q AG++++ + E IES + FF Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFF 534 >gi|322821637|gb|EFZ27903.1| hypothetical protein TCSYLVIO_5871 [Trypanosoma cruzi] Length = 379 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 46/196 (23%), Gaps = 21/196 (10%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59 ++ D E D +F GV +D + ++ F P Sbjct: 70 IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDKRRSFRSYVKPWRNPVLSEFCKK 129 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ + + + F T IG D + + Sbjct: 130 LTGISQEDVDNAPG-----LPDVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSI 184 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 R ++ LD+ + L+ + L H Sbjct: 185 LRDHVSFPGIFYEYLDIRTTFA------HHFNRGAPIKLDAMLRRMRLRF---EGRPHCG 235 Query: 178 KADVYATLALVWLIRE 193 D L + Sbjct: 236 FDDAVNIARLAVAMMR 251 >gi|108757524|ref|YP_635264.1| oligoribonuclease [Myxococcus xanthus DK 1622] gi|108461404|gb|ABF86589.1| oligoribonuclease [Myxococcus xanthus DK 1622] Length = 183 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 10/146 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFIT 61 FV D E G D + + I E +P + L +P + Sbjct: 6 QRFVWLDLEMTGLDPETCSIIEVGVIITGPDLRPIAEIERVIWQPEEVLLRMEPVVREMH 65 Query: 62 GITP--QKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +K E + + + ++ + G N+I D + Y Sbjct: 66 TRNELLEKVRASNTSLRVAERDVMALVTEHCALGEGILAG-NSIHTDRRFLIR--YMPLL 122 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAF 141 + Y + +L Sbjct: 123 ERYLHYRMVDVTSLKVLTRAWYPNLV 148 >gi|71020669|ref|XP_760565.1| hypothetical protein UM04418.1 [Ustilago maydis 521] gi|46100453|gb|EAK85686.1| hypothetical protein UM04418.1 [Ustilago maydis 521] Length = 606 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 39/204 (19%) Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDP 55 V D E G V DR + A + D Q I+S + + Sbjct: 423 LVWIDCEMTGLSVENGDRLLEIACIITDGQLNPIDSGVSYVISTPQSVLDGMNHWCVNQH 482 Query: 56 EAVFITGITPQKA-LRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIF 110 ++G+T + A I + PNT + N + D + Sbjct: 483 ---ALSGLTAECLDANRSYPHASVRTAILAYVRDRIPTPNTACLAGNTVHADKAFLHAEM 539 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 + + D+ + + + D W + Sbjct: 540 PELIHHLHYR-------IVDVSSIKELVKRWYGDNKLWNPSEPPK--------------- 577 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 H+ H A D+ A++ + R + Sbjct: 578 HMPNHRALNDINASIQELKWYRSE 601 >gi|330984983|gb|EGH83086.1| exonuclease RNase T and DNA polymerase III [Pseudomonas syringae pv. lachrymans str. M301315] Length = 153 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 19/154 (12%) Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 D + + I GIT AL G+ + E + + + +N+ FDD R Sbjct: 4 PDGRVIPNDVTAIHGITTDMALEHGIPKQEALGGFLRIYEQAG--LRVAHNVSFDDRIRR 61 Query: 108 NIFYRNFYD---------SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF 158 R + + + + + I A + + P+ + Sbjct: 62 IATKRFIGEQAANEFKTVPNYCTCQSSKNIVQCPPTAKMIRAGFGNQFKVPTVTE----- 116 Query: 159 KLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192 + G E V H A+ D A + + + Sbjct: 117 ---AMRHFTGEELVGGHRARQDSEACARIYFAMN 147 >gi|307706777|ref|ZP_07643582.1| exonuclease family protein [Streptococcus mitis SK321] gi|307617862|gb|EFN97024.1| exonuclease family protein [Streptococcus mitis SK321] Length = 196 Score = 53.3 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R ++I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE E + F ++GYN + D Y Sbjct: 58 TGITAETLKDAPPVE-EVIKEFQDFVGSLP--MVGYNAAKSDLPILAEHGL-----DYSR 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + DL D + GI + KLQ +A + +H++ D Sbjct: 110 QYK-----VDLYDEAFERRSSDLHGIA---------NLKLQTVASFLEFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTAHVYESFLESDQ 170 >gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC 13124] gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 302 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + V E F KP + P ++I GI Sbjct: 3 FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E I + + ++ +N FD R Sbjct: 58 PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D D+ + ++ + + + KL ++ A G E + H D A Sbjct: 97 --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153 Query: 185 LALV 188 ++ Sbjct: 154 ANIL 157 >gi|297698260|ref|XP_002826232.1| PREDICTED: ERI1 exoribonuclease 2-like isoform 1 [Pongo abelii] Length = 689 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ N + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R L + + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLFKT--SEKSLKDDIXATYKLFYRRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTSLLAWKMIRD 232 >gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886] gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886] Length = 223 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D + T F P + + EA+ G Sbjct: 20 VVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFNG 79 Query: 63 ITPQK-----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFY 115 I A+ + E + I + I+ +N FD + R Sbjct: 80 IKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERANL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 N + D + L GI N Sbjct: 140 K------RNPFHPFATFDTAALSGLALGQTV-------------LAKACKTAGIAFDNNE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTERTAELFCEIVNR 201 >gi|90413373|ref|ZP_01221366.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90325615|gb|EAS42084.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 207 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 20/196 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D ET D A + +I +++ D ++ I Sbjct: 28 DELVSVDCETTSLDPHSAELVTIAATVIKD--NRILTSKSIHLTLRAPSSLDANSIAIHR 85 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I Q G+ E E + F N ++GY+ R + Sbjct: 86 IRHQDLR-AGLDEKEALTTLLDFI--GNRPLVGYHIRYDKTILDRYYRRLFGFALPNKLV 142 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + D L+ + + L+ ++ + HDA D Sbjct: 143 EVSHLYHDRLERLLPNAYY---------------DLSLEAISRHLDLPVPERHDALEDTI 187 Query: 183 ATLALVWLIREKKPKL 198 + ++ Sbjct: 188 TAALIYVRLKHGDIPT 203 >gi|28869227|ref|NP_791846.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|213967497|ref|ZP_03395645.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301386461|ref|ZP_07234879.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302059344|ref|ZP_07250885.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302131217|ref|ZP_07257207.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852468|gb|AAO55541.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213927798|gb|EEB61345.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|331016942|gb|EGH96998.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 180 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 7/119 (5%) Query: 2 TNHFVIYDYE-TF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E T G VA + V++ +++ E F +PA L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFY 115 +T I+ + ++ S ++G+ + +D + R+ Sbjct: 60 KELTHISQSNIDSA-APLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRRHQL 117 >gi|323450230|gb|EGB06112.1| hypothetical protein AURANDRAFT_65802 [Aureococcus anophagefferens] Length = 1190 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 24/202 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + YD ET A Q A S E F + D A + G T Sbjct: 44 IAYDLETTSAWPATAEVVQLAFT------NVANSDEHFQALVLPEGGVDGGAAAVHGYTK 97 Query: 66 QKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + + + +R ++ +N D + I R + Sbjct: 98 ASLKKKRALPFDVAWGMARDWLDAVRDDRPVVLAAHNG---DRFDHPILRRLVAKHAAEA 154 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 +D L + R + G S L L + A G AHDA AD Sbjct: 155 DLASALWFDTLPLAREAFP----------DRRGPGSHTLGRLFSDATGGPLGGAHDALAD 204 Query: 181 VYATLALVWLIREKKPKLFEYL 202 A + + ++ + ++ Sbjct: 205 ARAVAEVWPWLVARRGEAWDDH 226 >gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2] gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2] Length = 193 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 25/179 (13%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 DR V+++ E + + P D P EA I G + E Sbjct: 3 YDRIITLGAVKIEGD-ELLTQSLYLIFDPRKDSSPQAEA--IHGFDNWMTRYQDLFH-EL 58 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 + I ++FS + + +N +FD +Y + F + D + + Sbjct: 59 AAPIRKWFSWADE--VVAHNAQFDIHYIQREFRKAEVDMLD----------------QPV 100 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197 Y + D L + L + H A D Y T L + Sbjct: 101 YCTMEGARRLWRGDPAKLDHCLAKIGL---ARTGHRHGALEDAYLTAGLYLHQQGVAKP 156 >gi|237722954|ref|ZP_04553435.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447476|gb|EEO53267.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 198 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +F D+ET + V V + +P +Y + Sbjct: 1 MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E I + + +N FD+ R ++ Y + Sbjct: 56 GLTYDDTMEVDE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + R + +L +A G N H A AD Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153 Query: 182 YATLALV 188 A + Sbjct: 154 EACAQIA 160 >gi|312962237|ref|ZP_07776729.1| exonuclease [Pseudomonas fluorescens WH6] gi|311283574|gb|EFQ62163.1| exonuclease [Pseudomonas fluorescens WH6] Length = 180 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 25/193 (12%) Query: 2 TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H++I D E T G + + V+RQ +++ + F +P L P Sbjct: 1 MPHWLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQ-RFVRPLRRPLLTPFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116 +T IT E ++ + G+ + +D + R+ Sbjct: 60 RQLTHITQANI-DAAAPVTEVWPLFERWLGQHQARLEGWASWGDYDRVQLELEWQRHG-- 116 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175 L A ++ L G++ H H Sbjct: 117 ---------------LASALADTPHVNLKQRFAKARRLDKPLGLNGALQLAGMQFHGQQH 161 Query: 176 DAKADVYATLALV 188 A D T L+ Sbjct: 162 RALEDARNTARLL 174 >gi|3885327|gb|AAC77855.1| hypothetical protein [Arabidopsis thaliana] Length = 227 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 15/118 (12%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLP 53 V D E G +V +DR + A + + + T+ K D Sbjct: 24 KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 83 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T K L + E E +++ +F ++ N++ D + + Sbjct: 84 HHGASGLTK----KVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKK 137 >gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223] gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223] Length = 224 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 59/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201 >gi|315650719|ref|ZP_07903774.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487023|gb|EFU77350.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 220 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 52/197 (26%), Gaps = 19/197 (9%) Query: 6 VIYDYETFGRDVALDRP------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++ D E + + + +D +++I S + KP + P Sbjct: 4 IVVDLEMNSVEKKYKNLDCTMETIEIGAIMLDENYQEISSFRT-YVKPEYNNRIRPLISR 62 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + E + + + I Y D Sbjct: 63 LTGITYDMVMNAPK-FDEALKMFSNWCLGVSDDIKIYAWSENDYKQILKE---------- 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S S D V + + S K L +A H A Sbjct: 112 ISLKKYKSSLDEERVYLTEWHDFQAEFDTKLGFEKQLSLK-TALDMAGVDFLGREHSALD 170 Query: 180 DVYATLALVWLIREKKP 196 D T L + +++ Sbjct: 171 DARNTAKLFNIFNDREM 187 >gi|307700293|ref|ZP_07637333.1| exonuclease [Mobiluncus mulieris FB024-16] gi|307614504|gb|EFN93733.1| exonuclease [Mobiluncus mulieris FB024-16] Length = 141 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 14/152 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60 FV D+ET + V D + + +S +P + +P V++ Sbjct: 1 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + ++ + ++ F I +N+ FD Y + S Sbjct: 58 HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFDGYVL------SDLASLYG 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152 + + N R+ + + R I A + P R+ Sbjct: 108 TEEIPNRRFCTVRLARKILADKLAKGKTPQRN 139 >gi|254525014|ref|ZP_05137069.1| oligoribonuclease [Stenotrophomonas sp. SKA14] gi|219722605|gb|EED41130.1| oligoribonuclease [Stenotrophomonas sp. SKA14] Length = 190 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58 + D E G D D + A V D Q + F + EA+ Sbjct: 9 ERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAEGPEFAI---HHPVETLEAMDEWN 65 Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 + Q+ + + + F + + N+I D + R Sbjct: 66 RNQHRRSGLWQRVVDSTTTLGQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQMPR 125 Query: 113 NFYDSYRW 120 + Sbjct: 126 LEKYFHYR 133 >gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091] gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091] Length = 445 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 35/218 (16%) Query: 2 TNHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +V+ D E + + + + +E + + D + Sbjct: 1 MRDYVVMDLE----NPNFRQNSICAIGVMLIRNN-NVVER---KYSLINPEDTFDNINIQ 52 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 IT I P + E+ I + S +I +NI +D R + Sbjct: 53 ITKIAPHMIKQSP-TLPEYWSEISSWLSNN---VIVGHNITYDLRVLTKSLQRYDLEVPE 108 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +++ + ++ S+KL+++A I N H+A Sbjct: 109 FNY--------------------CCTLTQSRKNLDLPSYKLENIAKKLHI-IYNPHNAIE 147 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 D A L I P + Y+ K + Sbjct: 148 DARAAYELFEYINRHNPIGTNQVKQYKYKPKTESYDPK 185 >gi|257484494|ref|ZP_05638535.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986187|gb|EGH84290.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013242|gb|EGH93298.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 180 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA + Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I Q ++ + ++ S ++G+ + Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARVLGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 Y R+ LD + ++ L G++ H Sbjct: 103 YDRQQLEEEWRYHRLDSALSSMPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFTGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|238758483|ref|ZP_04619660.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236] gi|238703387|gb|EEP95927.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236] Length = 187 Score = 53.3 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 40/191 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F + D ET G + A + VD + D +A+ I I Sbjct: 3 FRVIDTETCGL---EGGIVEVASIDVVDGVLN-----NPMSDLISPDRPISIDAMVIHHI 54 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + ++ + + +N R W Sbjct: 55 TEEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW- 97 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + R +Y P + + +++ H A D Y Sbjct: 98 -----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYV 143 Query: 184 TLALVWLIREK 194 T AL+ I + Sbjct: 144 TAALLQRIMKD 154 >gi|307776322|pdb|2XRI|A Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3 Length = 224 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 33 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 92 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 93 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 140 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 141 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 200 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 201 KNIANIMKTLAYR 213 >gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC 824] gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain [Clostridium acetobutylicum ATCC 824] Length = 306 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 29/191 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F D+ET + + P V V + +E + + P + I GI Sbjct: 2 KFTAIDFET--ANEKRNSPCSIGIVVV-KDGHVVEKSHHLIR--PKEMRFMPINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P ++ + +I +F ++ +N FD R + +++ Sbjct: 57 RPAMVEKEPE-FDKVWEKIKHYFDD---TLVIAHNASFDISVLRKSAELYNIELPEFNY- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + R Y G + KL + G E HDA D A Sbjct: 112 -----ICTMKLARNFY-------------KGIENAKLNTVNNFLGYEF-RHHDALYDALA 152 Query: 184 TLALVWLIREK 194 ++ I ++ Sbjct: 153 CSNIMLSISKE 163 >gi|328774277|gb|EGF84314.1| hypothetical protein BATDEDRAFT_9096 [Batrachochytrium dendrobatidis JAM81] Length = 188 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 8/116 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 V D E G D+ D + A + D ++ + + + Sbjct: 8 KPLVWIDLEMTGLDLERDVIIEIACIITDGNLNAVQERYDLVLHQPKSVMDQMNDWCIQT 67 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIF 110 G + ++ + + + I F ++ N++ D + Sbjct: 68 HGESGLTKQVIESTLTLKDAEATILDFVKRHIPKQREGVLAGNSVHVDRQFLHKHM 123 >gi|308177366|ref|YP_003916772.1| oligoribonuclease [Arthrobacter arilaitensis Re117] gi|307744829|emb|CBT75801.1| putative oligoribonuclease [Arthrobacter arilaitensis Re117] Length = 203 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 27/121 (22%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------ 49 + V D E G D+ D + A + D + ++ KP Sbjct: 5 SEKIVWIDCEMTGLDLVNDALIEVAVLITDSDLQIVDEGIQVVIKPEPAALAQMDDFVRN 64 Query: 50 -----DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 LP+ E GI +A R I + PN ++G N++ D Sbjct: 65 MHMVSGLLPELE----NGIAMDEAQRL------VIDYIKKHVPEPNKALLGGNSVGTDKN 114 Query: 105 Y 105 + Sbjct: 115 F 115 >gi|290960166|ref|YP_003491348.1| oligoribonuclease [Streptomyces scabiei 87.22] gi|260649692|emb|CBG72807.1| oligoribonuclease [Streptomyces scabiei 87.22] Length = 200 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 56/206 (27%), Gaps = 45/206 (21%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59 M + V D E G ++ D + A + D + + +P D L PE V Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEVVR 60 Query: 60 ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 Q G+ EA+ + + P + N + D + Sbjct: 61 ------QMHTASGLLDALAGGTTLADAEAQVLAYVREHVKEPRKAPLCGNTVGTDRGF-- 112 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 D D+ V + P A N Sbjct: 113 -----LLRDMPTLEGHLHYRIVDVSSVKELARRWYPR-------------------AYFN 148 Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193 E H A AD+ ++A + RE Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174 >gi|153831795|ref|ZP_01984462.1| exonuclease KapD [Vibrio harveyi HY01] gi|156974798|ref|YP_001445705.1| hypothetical protein VIBHAR_02516 [Vibrio harveyi ATCC BAA-1116] gi|148871793|gb|EDL70616.1| exonuclease KapD [Vibrio harveyi HY01] gi|156526392|gb|ABU71478.1| hypothetical protein VIBHAR_02516 [Vibrio harveyi ATCC BAA-1116] Length = 176 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 20/148 (13%) Query: 3 NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E + G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGITP+K + G E + + + F N + DD + Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW---GRDDLILLEECQQ 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 D+ + N + + + + ++ Sbjct: 114 KGIDAPFTEFINLATLYRIQNRLKDKRI 141 >gi|157120012|ref|XP_001653487.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|157120014|ref|XP_001653488.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|108875101|gb|EAT39326.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|108875102|gb|EAT39327.1| oligoribonuclease, mitochondrial [Aedes aegypti] Length = 192 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI 60 ++ V D E G +V DR + A V ++ E +E ++ +P + E Sbjct: 15 QHNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 74 Query: 61 TGITP---QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 Q + + + + F C + N I D + + Sbjct: 75 NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 134 Query: 115 YDSYRW 120 + Sbjct: 135 EYLHYR 140 >gi|84387084|ref|ZP_00990106.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01] gi|84377945|gb|EAP94806.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01] Length = 176 Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 38/202 (18%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M ++ V+ +D E T G + +D I ++ KP Sbjct: 1 MNHNRVVCFDLEMCCWSEDGVGTTG------EIIEIGLAEIDLVSGTIVKRAQYYVKPEK 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G + + + F P + DD Sbjct: 55 DEV-SLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAW---GRDDLILHKE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + + N + + + + ++ + N Sbjct: 111 CIEKGIEPPFSEFLNIATLYRVQNRLKEKRIGHRAAQE-----------------AKNIE 153 Query: 170 EHVNAHDAKADVYATLALVWLI 191 H D Y L + Sbjct: 154 WEGRQHSGYVDAYNLAKLALTM 175 >gi|329123183|ref|ZP_08251752.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116] gi|327471528|gb|EGF16972.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116] Length = 182 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 19/133 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + + D E G + +R + A + D+ + ++ K D Sbjct: 5 KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62 Query: 54 DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 ++ + E + F I N+I D + Sbjct: 63 ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118 Query: 109 IFYRNFYDSYRWS 121 + Sbjct: 119 YMPDLADYFHYRH 131 >gi|313217587|emb|CBY38652.1| unnamed protein product [Oikopleura dioica] gi|313232309|emb|CBY09418.1| unnamed protein product [Oikopleura dioica] Length = 627 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 12/230 (5%) Query: 5 FVIYDYETF----GRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 FV D+E +F A + + + + +P + Sbjct: 87 FVCIDFEATCERNNTFNYPHEIIEFPACLVHIESRKIVGEFHS-YVRPFRKAHLSDFCME 145 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT +K + + ++ + + ++ + + Sbjct: 146 LTGITQEKVDQAPY-FPQVFKQFVGWLRSYGLLDQTSDGRVKISKHTPSWTLLTDSPADI 204 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF----KLQDLALANGIEH-VNA 174 + D + + + + K++D+ G+E + Sbjct: 205 CKFLAKQCEMDDIAFPYNWASRYCNIKKIFMSVYKPKYHRFTPKIEDMLEILGMEMRGDL 264 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224 H K D + + + ++++ NK + ++ Sbjct: 265 HSGKDDARNICRIAIRLIKDGAQIWQNEMYKPNKYNSSAPYYLSKPDHII 314 >gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218] Length = 219 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ G Sbjct: 20 VVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEGANLEKAALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDHGFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A ++ AH Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMAFDNREAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I + Sbjct: 183 SALYDTQQTAELFCGIVNQ 201 >gi|239997082|ref|ZP_04717606.1| oligoribonuclease [Alteromonas macleodii ATCC 27126] Length = 181 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 10/130 (7%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55 M+ + V D E G D + A + D Q + V +DD L D Sbjct: 1 MSKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQSDDVLNNMDE 60 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 + G + + + E S + F + N I D + Sbjct: 61 WCTRVHGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCGNTIGQDRRFMVKYM 120 Query: 111 YRNFYDSYRW 120 + Sbjct: 121 PELEAYFHYR 130 >gi|227875810|ref|ZP_03993936.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC 35243] gi|227843558|gb|EEJ53741.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC 35243] Length = 143 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 14/152 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60 FV D+ET + V D + + +S +P + +P V++ Sbjct: 3 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GIT + ++ + ++ F I +N+ FD Y + S Sbjct: 60 HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFDGYVL------SDLASLYG 109 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152 + + N R+ + + R I A + P R+ Sbjct: 110 TEEIPNRRFCTVRLARKILADKLAKGKTPQRN 141 >gi|260549063|ref|ZP_05823284.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624] gi|260407791|gb|EEX01263.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624] Length = 188 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%) Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54 M++ + D E G D D+ + A + D + V D L D Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMD 60 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 G + ++ R + + + +F + N+I D + + Sbjct: 61 EWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120 Query: 110 FYRNFYDSYRW 120 + Sbjct: 121 MPELEQYFHYR 131 >gi|86146253|ref|ZP_01064578.1| hypothetical protein MED222_16116 [Vibrio sp. MED222] gi|218709772|ref|YP_002417393.1| hypothetical protein VS_1784 [Vibrio splendidus LGP32] gi|85835964|gb|EAQ54097.1| hypothetical protein MED222_16116 [Vibrio sp. MED222] gi|218322791|emb|CAV18968.1| hypothetical protein VS_1784 [Vibrio splendidus LGP32] Length = 176 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 38/202 (18%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M ++ V+ +D E T G + +D I ++ KP Sbjct: 1 MNHNRVVCFDLEMCCWSEDGVGTTG------EIIEVGLAEIDLASGTIVKRAQYYVKPEK 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G + + + F P + DD Sbjct: 55 DEV-SLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAW---GRDDLILHKE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + + N + + + + ++ + N Sbjct: 111 CIEKGIEPPFSEFLNIATLYRVQNRLKEKRIGHRAAQE-----------------AKNIE 153 Query: 170 EHVNAHDAKADVYATLALVWLI 191 H D Y L + Sbjct: 154 WEGRQHSGYVDAYNLAKLALTM 175 >gi|307313309|ref|ZP_07592933.1| hypothetical protein SinmeBDRAFT_5759 [Sinorhizobium meliloti BL225C] gi|307320758|ref|ZP_07600169.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306893576|gb|EFN24351.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306899322|gb|EFN29957.1| hypothetical protein SinmeBDRAFT_5759 [Sinorhizobium meliloti BL225C] Length = 178 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63 V D+E + P + A V D + + +PA D+ EA + GI Sbjct: 2 IVFLDFEASSLNK-KSFPIEVAWVFQD------GRSRSYLIRPAPDWTDWSAEAEEVHGI 54 Query: 64 TPQKALRDGVVEAEFSRRIHQFFS 87 + +G+ A + + + + Sbjct: 55 SRGMLRAEGLPVAFVAEEMIRELA 78 >gi|238020074|ref|ZP_04600500.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748] gi|237863598|gb|EEP64888.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748] Length = 209 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + A + V + + I+ D E + I Sbjct: 1 MLDFVALDFET--ANKFKNSACSLAVITV-KDGQIIKKAYSLIK--PPFMSFDDECIEIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + + + I++ + I+ +N +FD R D Y+ Sbjct: 56 GIQPKDVIHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W + D ++ A PD + KL +A G+E H A D Sbjct: 108 WPD----LDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152 Query: 182 YATLAL 187 + Sbjct: 153 ETCAKV 158 >gi|187779049|ref|ZP_02995522.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC 15579] gi|187772674|gb|EDU36476.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC 15579] Length = 256 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 32/234 (13%) Query: 4 HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 +++I+D E + + Q ++++ + I++ KP + Sbjct: 2 NYIIFDLE---FNQGYNNHFEIKCPFEIIQIGAIKLNEGFTTIDTFNAL-VKPEIYSDLN 57 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P +T +T + + + +F + N N +RN Sbjct: 58 PFVKNLTNLTMDSLNKA-RPFRDVYKDFLEFLNKENKD---KNIFCIWGMTDMKELFRNI 113 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + ++ Y + + +L + N Sbjct: 114 VYYELDTKSIPKEYINV-----QAYTGKYLNYPKSVNIGLSNAVELFHITKNNDF----- 163 Query: 175 HDAKADVYATLALVWLIREKKPKL-----FEYLYDYRNKNQLRKLIDIQNMTPL 223 H+A D + T + I +K K R+KN K+ + Sbjct: 164 HNAFNDAFYTTEVFKKIYSEKIKTKIYKPMNNTTTCRHKNTKTKIDTVNLFKQF 217 >gi|110636436|ref|YP_676643.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110279117|gb|ABG57303.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 183 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 57/211 (27%), Gaps = 29/211 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + V + +++ KP D+ V I GI Sbjct: 2 NFTALDFET--ANTHKTSICAVGMAIV-EDGKVVKTISKLI-KPVPDF-YSYWNVQIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 TP + + + Q+ + +N FD S + + Sbjct: 57 TPDMTADAPY-FIDVWQELKQYIDYS---TLVAHNAAFDVGA---------LRSILTTHE 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + D + KL + + N H+A++D Sbjct: 104 VSFPKTDYFCSCSVSRKVFKEIEN----------HKLSTVCRHIDVPL-NHHEAESDAIG 152 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 ++ E+ K +L+ Sbjct: 153 AAQIIIKAGERLGANSIEELMAMLKMKLKVF 183 >gi|116255725|ref|YP_771558.1| putative exonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115260373|emb|CAK03477.1| putative exonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 47/190 (24%), Gaps = 36/190 (18%) Query: 7 IYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + D ET G + D + V D W + PE + I Sbjct: 21 VVDLETAG-NGVND-VCEIGWQDVVLGHDGGWRVDDERGSLLV--NPGRPISPETMAIHH 76 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + F + I P +I R ++ +W Sbjct: 77 ILDAEVATAP-----FWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWICTW 131 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDAKA 179 WP ++ L+ L L G+ H AH A Sbjct: 132 K-------------------CALRLWPEL-PRFSNQLLRYLRLPEGLVHAIGLPAHRAMP 171 Query: 180 DVYATLALVW 189 D Y T + Sbjct: 172 DAYVTAHHLR 181 >gi|302185096|ref|ZP_07261769.1| exonuclease [Pseudomonas syringae pv. syringae 642] Length = 180 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I Q ++ + ++ S I+G+ + Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 Y R LD + ++ L G++ H Sbjct: 103 YDRQQLEEEWRHHHLDSALSGMPHINLKQRFAQARQLQKPMGLNSALQLAGMQFSGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40] Length = 225 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 9/163 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + A D + A V + +R + E T F +P + A+ TG Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92 Query: 63 ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 I A+ + + R + + ++ +N FD + R Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 + + L + + DG + Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHS 195 >gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str. Loch Maree] gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A3 str. Loch Maree] Length = 309 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P+ + + + +I +F+ ++ +N FD RN Y Sbjct: 57 RPRMVQDE-LEFDKIWGKIKHYFNNN---LVTAHNASFDISVL-----RNTLKLYNIK-- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +D + M+ F + +L + G + HDA AD A Sbjct: 106 --MPSFDYICTMKLSKNFYSNIDN----------VRLNTVNNFLGYKF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 302 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + V E F KP + P ++I GI Sbjct: 3 FVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E I + + ++ +N FD R Sbjct: 58 PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D D+ + ++ + + + KL ++ A G E + H D A Sbjct: 97 --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153 Query: 185 LALV 188 ++ Sbjct: 154 ANIL 157 >gi|71736737|ref|YP_274026.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557290|gb|AAZ36501.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323478|gb|EFW79563.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320329479|gb|EFW85471.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 180 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA + Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I Q ++ + ++ S ++G+ + Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARVLGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 Y R+ LD + ++ L G++ H Sbjct: 103 YDRQQLEEEWRYHRLDSALSSMPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFAGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|25011833|ref|NP_736228.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae NEM316] gi|77414413|ref|ZP_00790566.1| exonuclease [Streptococcus agalactiae 515] gi|24413374|emb|CAD47453.1| Unknown [Streptococcus agalactiae NEM316] gi|77159528|gb|EAO70686.1| exonuclease [Streptococcus agalactiae 515] Length = 195 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 32/198 (16%) Query: 5 FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E T G Q + V+ ++I + + +TG Sbjct: 7 YIAFDLEFNTVG---EHSHIIQVSAVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +E + F +T +IGYN + D N D Sbjct: 60 ITARDIIGAPKIET-ILTDLQSFV--GDTPLIGYNGHKSDLPLLVE----NGLDLTSQYQ 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DL D + +GI + KL +A GI+ AH++ D Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156 Query: 183 ATLALVWLIREKKPKLFE 200 T + + Sbjct: 157 MTARVYEKFLDLDENKIY 174 >gi|228982489|ref|ZP_04142748.1| Exonuclease [Bacillus thuringiensis Bt407] gi|228776672|gb|EEM24980.1| Exonuclease [Bacillus thuringiensis Bt407] Length = 186 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 36/155 (23%), Gaps = 9/155 (5%) Query: 2 TNHFVIYDYETF----GRDVA--LDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPD 54 H +I D E+ G + + V +E +E + F KP Sbjct: 1 MKHLLIIDLESTCFKRGAEPRNFFSEIIEIGAVVLHTETFEIVEEYQTF-VKPVLFPTLS 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + +T I + G + I ++ + + + + Sbjct: 60 EYCLHLTTIRQDEV-DYGKSIKDAMNEIASLYNKYDCVFASWGFYDKKQFKQVCERFGVN 118 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP 149 Y + + P Sbjct: 119 YPFGHLHISLKHQHGTWTRQRPMGMERALKMHHLP 153 >gi|146327084|gb|AAI41731.1| LOC100049744 protein [Xenopus laevis] Length = 273 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 82 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 141 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I ++ R+ ++ + S + D Sbjct: 142 IIQDMVDGQP-TLSQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKLM 189 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G + L V + + L D+ ++H H D Sbjct: 190 LPGQCEYLGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNKGMSLQHIGRPHSGIDDC 249 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 250 RNIANIMKTLAHR 262 >gi|115896443|ref|XP_790825.2| PREDICTED: similar to exonuclease domain containing 1 [Strongylocentrotus purpuratus] gi|115964487|ref|XP_001192090.1| PREDICTED: similar to exonuclease domain containing 1 [Strongylocentrotus purpuratus] Length = 613 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 13/197 (6%) Query: 5 FVIYDYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 ++ D+E+ D +F V ++ ++ES + P + + Sbjct: 20 LIVIDFEST---CWKDKKNTSQEIIEFPAVLLNTTTGQLESEFQQYVMPDEHPVLSDFCT 76 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI+ ++ GV + + + + YN D + +D Sbjct: 77 ELTGISQEQVEN-GVPLFICLNKFTSWLKKIESEKNLAYNRSTDDTRKLCTFVTWSDWDL 135 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + + + + + L H Sbjct: 136 SVCLRYECQRKQLYKPSALNHWIDARAVYRNFYQRKPKGLS--GALQEVGIEFAGRQHSG 193 Query: 178 KADVYATLALVWLIREK 194 D T LVW + + Sbjct: 194 LDDAKNTAILVWRMIQD 210 >gi|289428666|ref|ZP_06430349.1| exonuclease [Propionibacterium acnes J165] gi|289158064|gb|EFD06284.1| exonuclease [Propionibacterium acnes J165] Length = 223 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 35/132 (26%), Gaps = 19/132 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEA 57 + V D E G D+A D + A + D Q KP +L Sbjct: 20 KDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRN 79 Query: 58 VFIT---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 + T G+T +A + I + + N I D + Sbjct: 80 MHTTSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAK 133 Query: 109 IFYRNFYDSYRW 120 + + Sbjct: 134 DMPKLESYVHYR 145 >gi|237797629|ref|ZP_04586090.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020479|gb|EGI00536.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 180 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 23/196 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +P L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPVRRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I+ + ++ S ++G+ + Sbjct: 60 RQLTHISQSNIDSA-APLTTVWPQFERWLSHHRARVLGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176 Y R LD + ++ L G++ H Sbjct: 103 YDRQQLEEEWRHHQLDSALSSMPHVNLKQRFAQARQLQKPLGLNSALQLAGMQFTGQQHR 162 Query: 177 AKADVYATLALVWLIR 192 A D T L+ LI Sbjct: 163 ALVDARNTARLLPLIM 178 >gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 302 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + V E F KP + P ++I GI Sbjct: 3 FVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E I + + ++ +N FD R Sbjct: 58 PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D D+ + ++ + + + KL ++ A G E + H D A Sbjct: 97 --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153 Query: 185 LALV 188 ++ Sbjct: 154 ANIL 157 >gi|15221225|ref|NP_177579.1| exonuclease family protein [Arabidopsis thaliana] gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana] gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana] gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana] gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana] Length = 506 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 59/192 (30%), Gaps = 29/192 (15%) Query: 5 FVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +D ET +F + V R+ E++ S +P D L Sbjct: 13 IAFFDLET--AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTL-VRPTDLSLISTLTKR 69 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +GIT L +E + +++ G+N IRFD R F Sbjct: 70 RSGITRDGVLSA-HTFSEIADKVYDIL--HGRIWAGHNIIRFDCVRIREAFAEIGLSPPE 126 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D L ++ + A K+ LA G+ AH + Sbjct: 127 -----PKATIDSLSLLSQKF------------GKRAGDMKMASLATYFGLG-DQAHRSLD 168 Query: 180 DVYATLALVWLI 191 DV L +V Sbjct: 169 DVRMNLEVVKYC 180 >gi|297571046|ref|YP_003696820.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] gi|296931393|gb|ADH92201.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] Length = 218 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 19/114 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58 V D E G D+ D + A V D + +++ KP ++ + ++ Sbjct: 12 IVWIDCEMTGLDLEKDALVEIAIVVTDAELNPLDNGLDIVIKPPEEAAANMDSFVRNMHT 71 Query: 59 ---FI----TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 I TG T + A + + I +F +G N++ D + Sbjct: 72 TTGLIKRWETGTTIEDAEK------QCIDYIKRFVPEIRKAPLGGNSVGTDRTF 119 >gi|170782736|ref|YP_001711070.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus] gi|169157306|emb|CAQ02493.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 216 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 27/176 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M F D+ET + + V+V R +++ PA I Sbjct: 8 MPLDFTAIDFET--ANNSSASACSVGLVKV-RDGVVVDTASWLIRPPAGHDSFSVWNTRI 64 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI ++ ++ + + + +N RFD + + + Sbjct: 65 HGIVEDDVADADG----WADQLPRLMAFAGDDHLVAHNARFDMGVIQGACKATALIAPPY 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 S+ L V R Y S++L A A G E + H+ Sbjct: 121 SY------LCSLQVARRTYTLD--------------SYRLPVAARAAGFEDFSHHE 156 >gi|118602537|ref|YP_903752.1| ribonuclease T [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567476|gb|ABL02281.1| RNAse T [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 195 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 59/205 (28%), Gaps = 37/205 (18%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------A 57 V+ D ET G + D + + + I+ + K + + +P A Sbjct: 13 VVIDTETGGFNEKTDAMLEICAIVIG-----IDKMNNLYPKGSQHFHIEPFKGGMLESSA 67 Query: 58 VFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFY 111 + GI A+++ + +++ + I+ +N FD + Sbjct: 68 LKFNGIDVDNPFRMAVKEIDAIKQIYTKVYAELKQESCTRAILVGHNAFFDLGFLHAATD 127 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R + ++ LD + + + + + Sbjct: 128 RCKL-------KSPFHQFSTLDTVSLSALHYGETVLAKAMRKANI-----------EWDD 169 Query: 172 VNAHDAKADVYATLALVWLIREKKP 196 AH A D T L I KP Sbjct: 170 SCAHSALYDTQKTAELFCKIFNTKP 194 >gi|27365643|ref|NP_761171.1| hypothetical protein VV1_2322 [Vibrio vulnificus CMCP6] gi|37680205|ref|NP_934814.1| hypothetical protein VV2021 [Vibrio vulnificus YJ016] gi|320156044|ref|YP_004188423.1| hypothetical protein VVM_02370 [Vibrio vulnificus MO6-24/O] gi|27361791|gb|AAO10698.1| hypothetical protein VV1_2322 [Vibrio vulnificus CMCP6] gi|37198952|dbj|BAC94785.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319931356|gb|ADV86220.1| hypothetical protein VVMO6_01198 [Vibrio vulnificus MO6-24/O] Length = 176 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 20/148 (13%) Query: 3 NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNEDGVGRTG------EIIEIGLAEIDLLKGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGITP+K + G AE + + + F N + DD Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLAEVIKSMIKNFGGSNKIYASW---GRDDRILMQECQE 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 D+ + N + + + ++ Sbjct: 114 KGIDAPFNEFINIATLYRIQHRLKDKRI 141 >gi|325926745|ref|ZP_08188053.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Xanthomonas perforans 91-118] gi|325542826|gb|EGD14281.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Xanthomonas perforans 91-118] Length = 183 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 32/200 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPAD-DYLPDPEAV 58 ++ FV D E G V VD E F+ + D DPEA+ Sbjct: 3 LSEIFVSVDIEASGPIPGEFSLLSIGAVLVD-------RPETSFYLELKPEDTRHDPEAL 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPN-----TCIIGYNNIRFDDYYSRNIFYRN 113 +TG ++ R+GV R+ Q+ S + +G N F Sbjct: 56 AVTGFEIEELARNGVEPGAAMRKFGQWLSEFSAPSQRPVFVGLNAAFD------WSFVNY 109 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++ Y G + D+ + G +W D S +++ L + Sbjct: 110 YFHKYCGENPFGFTALDI-----KAFFMGVVGSRW----DQTKSSQMEKL---LRPKLTG 157 Query: 174 AHDAKADVYATLALVWLIRE 193 H+A D L +++ Sbjct: 158 THNALEDARYQAELFRKLQK 177 >gi|254442129|ref|ZP_05055605.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235] gi|198256437|gb|EDY80745.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235] Length = 193 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ + D E G D A DR + A + ++Q E + E +P + + Sbjct: 1 MSKRRYCWIDLEMTGLDPATDRIVEAAVIITNKQLEPVFEWESAVRQPQEVLEGMNDWCK 60 Query: 60 IT------------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 GIT ++ + ++F N C+I N+I D + Sbjct: 61 HHHAESGLLDRIQDGITEEELDDK------LAEITLKYFKKNNPCVIAGNSIAQDRKFID 114 Query: 108 N 108 Sbjct: 115 R 115 >gi|115396528|ref|XP_001213903.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114193472|gb|EAU35172.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 186 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP 47 ++ V D E G D D+ Q D Q ++ EV +P Sbjct: 7 SDPLVWIDCEMTGLDPETDQILQICCFVTDAQMNLLDETGFEVIIHQP 54 >gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum WCFS1] gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum JDM1] gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum WCFS1] gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum JDM1] Length = 173 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 28/180 (15%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D+ET + D A V + + + V I GI Sbjct: 2 DFET--ANAKRDSACSLALTVVRNN-QISDEFYTL---IKPESDFFWRNVQIHGIHEADV 55 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + + I FF ++ +N FD RN Sbjct: 56 ADAPK-FPDVWQHIEPFFQRD--RLVIAHNAPFDIGVLRNTLAHYGI---------SAPE 103 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 + +D ++ F P+ + KL + A I+ + H+A D A ++ Sbjct: 104 YLSMDTVKTSQRFYPEL----------PNHKLDTVCQALDIDLQHHHNALDDSLACANIL 153 >gi|315652211|ref|ZP_07905206.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485517|gb|EFU75904.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 339 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 28/241 (11%) Query: 2 TNHFVIYDYETF----GR-DVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 +++++ D E GR D + ++++ + E ++ KP Sbjct: 9 MDNYIVLDLEWNQSPNGREHSNKDLPFEIIEIGAIKLNSRLETVDEFH-RVIKPTVYKKI 67 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYSRNIF 110 + + I + + GV + +F + N I+ RN+ Sbjct: 68 HFKVHEVVQIGIWELKKKGVPFVDAINDFFEFCEMDNKQKKKILCTWGNLDLVELQRNMK 127 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 + N + + + + Y ++ L+ IE Sbjct: 128 FYNVENKFEYPF---------------FYYDLQKLFNIKFQNAQQERIPLERAVNMLNIE 172 Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229 H A D T+ ++ + + L YR + I + VS + Sbjct: 173 VERPFHHAFDDACYTVKVMQRMDFFSVSEYYSLDYYRVPRNADEEIYLHFSGYSKFVSTL 232 Query: 230 F 230 F Sbjct: 233 F 233 >gi|282854757|ref|ZP_06264092.1| exonuclease [Propionibacterium acnes J139] gi|282582339|gb|EFB87721.1| exonuclease [Propionibacterium acnes J139] Length = 205 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 17/48 (35%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 M + V D E G D+A D + A + D Q KP Sbjct: 1 MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPE 48 >gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster bacterium] Length = 196 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 27/200 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + + + + + + F +P DP A+ G Sbjct: 13 VVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHIEPFKGANLDPSALKFNG 72 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I R V E E I + I+ +N FD + R+ Sbjct: 73 IDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLGFLYAASNRSKL- 131 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N ++ +D + + + + + + AH Sbjct: 132 ------KNPFHQFSTIDTVSLSALYYGETVLAKAMRVANI-----------EWDDAKAHS 174 Query: 177 AKADVYATLALVWLIREKKP 196 A D T L I + Sbjct: 175 ALYDTKKTAELFCKIFNAQD 194 >gi|296875763|ref|ZP_06899826.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 15912] gi|296433228|gb|EFH19012.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 15912] Length = 197 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR ++++ + + D + Sbjct: 5 EDYIAFDLE---FNQYEGAYQIIQVSAVRF-TDGKEVDHYDSY---VYTDKPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K +E + F +IGYN + D + D Y Sbjct: 58 TGITQDKIQNAPQLE-QVLSEFKAFVGDRP--LIGYNAKKSDLPILL-ENGLDLEDQYA- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ D PS G + +L +A G+ +HD+ D Sbjct: 113 --------VDVFDEAFERR---------PSDLHGIKNLQLHTVAEFLGVA-GKSHDSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTALVYEQFLEFDQ 170 >gi|312883579|ref|ZP_07743304.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368802|gb|EFP96329.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC BAA-2122] Length = 176 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 11/146 (7%) Query: 1 MTNHFVI-YDYET-----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M ++ V+ +D E G + +D +I ++ KP D + Sbjct: 1 MNHNRVVCFDLEMCCWNENGIG-RTGEIIEIGLAEIDLTSGEIVKRAQYYVKPEADEV-S 58 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +TGI+P+K + G E + + F N + DD +N + Sbjct: 59 QFCTELTGISPRKIEKQGRSLGEVLNSMKKNFGGSNKIYASW---GRDDVILQNECAKKG 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYA 140 + + N + + + + ++ Sbjct: 116 LEMPFREFINLATLFRIQNRLKDKRV 141 >gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 173 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 50/180 (27%), Gaps = 28/180 (15%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D+ET + D A V + + + V I GI Sbjct: 2 DFET--ANAKRDSACSLALTVVRNN-QISDEFYTL---IKPESDFFWRNVQIHGIHEADV 55 Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 + + I FF ++ +N FD RN + + Sbjct: 56 ADAPK-FPDVWQHIEPFFQRD--RLVIAHNAPFDIGVLRNTLAHYGISAPEY------LS 106 Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 D ++ + Y + KL + A I+ + H+A D A ++ Sbjct: 107 MDTVNTSQRFY-------------PELPNHKLDTVCQALDIDLQHHHNALDDSLACANIL 153 >gi|301063709|ref|ZP_07204220.1| exonuclease [delta proteobacterium NaphS2] gi|300442182|gb|EFK06436.1| exonuclease [delta proteobacterium NaphS2] Length = 177 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 47/177 (26%), Gaps = 21/177 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYL 52 M + V D E G D + A + D + E L Sbjct: 1 MIGNLVWIDLEMTGLDPEHHVIVEIASIVTDDHLSVLAEGPDIVIHQPESTLSAMEPWSL 60 Query: 53 PDPEAV-FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 +A + I E E I QF ++ + G + + + +++ Sbjct: 61 EHHQASGLLDRIKTS-VYSTEQAEEETLSFIRQFCQRGHSPLCGNSICQDRRFLVKHMPT 119 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + YR +DV P + T L D+ + G Sbjct: 120 LEAFFHYRN-----------IDVSSVKELVKRWYPNLPHFEKQKTHLALSDIKESIG 165 >gi|146305663|ref|YP_001186128.1| oligoribonuclease [Pseudomonas mendocina ymp] gi|166216580|sp|A4XPY0|ORN_PSEMY RecName: Full=Oligoribonuclease gi|145573864|gb|ABP83396.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] Length = 180 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ + D E G + D + A + D + + V +D+ L D Sbjct: 4 PNNLIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSDETLAGMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + A + F I N+I D + Sbjct: 64 THGQSGLTQRVRESRIDTATAEAQTIAFLEQWVPKGKSPICGNSIGQDRRFLYKYMPALE 123 Query: 115 YDSYRW 120 + Sbjct: 124 AYFHYR 129 >gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2] gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2] Length = 202 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 35/192 (18%) Query: 8 YDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-----AVFI 60 D ET G D + A +I + + + A + Sbjct: 11 LDVETTGLGPNSDEIIELALKLFSYRADTGEILDIKDKAAFLREPISKSAKNNYSRAFRV 70 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + G + +I ++F ++ + +N FD + Sbjct: 71 HGIPYEAV--SGKCFDDI--KIKKYFFHADS--VFAHNASFDRSF------------LYR 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + MR++ P ++ G T KL L ++ I H A D Sbjct: 113 MYPEDINELKWYCTMRSV----------PWKEYGFTDSKLLTLLQSHQIAESQTHRAMDD 162 Query: 181 VYATLALVWLIR 192 + L L+ Sbjct: 163 ITYLLELLKKTN 174 >gi|289679622|ref|ZP_06500512.1| exonuclease [Pseudomonas syringae pv. syringae FF5] gi|330897689|gb|EGH29108.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981951|gb|EGH80054.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 180 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I Q ++ + ++ S I+G+ + Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 Y R LD + ++ L G++ H Sbjct: 103 YDRQQLEEEWRHHHLDSALSSMPHVNLKQRFAQARHLQKPMGLNSALQLAGMQFSGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|312898045|ref|ZP_07757451.1| DNA polymerase III subunit epsilon domain protein [Megasphaera micronuciformis F0359] gi|310620870|gb|EFQ04424.1| DNA polymerase III subunit epsilon domain protein [Megasphaera micronuciformis F0359] Length = 184 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 58/213 (27%), Gaps = 29/213 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + D A V + + + KP D + + I Sbjct: 1 MLEFTAIDFET--ANRYADSACSLAAVSI--AGQSVMHEGYTLIKP-PFNRFDEDNIRIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITPQ I + + I+ + FD R++ R S Sbjct: 56 GITPQMVSAKP-TFDALWPDIRKRLNKR---ILIAHYAVFDTRVLRSLIKRYNLPGLNAS 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + PD + KL +A G H A D Sbjct: 112 YA---------CTVEISRKVWPDL----------PNHKLDTVAGHLGF-TFRHHQALDDA 151 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 A +V E+ R +L+ Sbjct: 152 RACARIVCAAAERTGASSVEDLLTRTGLKLKHF 184 >gi|290968085|ref|ZP_06559634.1| DNA polymerase III subunit epsilon domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290781991|gb|EFD94570.1| DNA polymerase III subunit epsilon domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 184 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 29/187 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + + A V++ E + +P + I Sbjct: 1 MLEFTAIDFET--ANKYANSACSLAAVQMRGTQCIQEQYSLIK---PPFMTFEPTNIAIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP++ ++ + I+ + FD R+ D + Sbjct: 56 GITPEQVRQE-KNFLQLWPLFKPCMEKK---ILAAHYAVFDTRVLRSTLKTYHLDVPAAT 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + ++ WP + KL +A G + H A D Sbjct: 112 Y---------VCTVQISRKV------WP----QLPNHKLDTVANMLGYSF-HHHHALEDA 151 Query: 182 YATLALV 188 A ++ Sbjct: 152 GACAYIL 158 >gi|293344344|ref|XP_002725706.1| PREDICTED: exonuclease domain containing 1-like [Rattus norvegicus] Length = 687 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ + +F V ++ +IES + +P + + + Sbjct: 37 LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ ++ F Sbjct: 97 TGIKQVQV-DEGVPLKICLSQFGKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYNRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|119627448|gb|EAX07043.1| prion protein interacting protein, isoform CRA_b [Homo sapiens] Length = 206 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 15 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 74 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + + + D Sbjct: 75 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 122 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181 G ++ L V + + L D+ ++H H D Sbjct: 123 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 182 Query: 182 YATLALVWLIREK 194 ++ + + Sbjct: 183 KNIANIMKTLAYR 195 >gi|27263219|gb|AAN88025.1| putative oligoribonuclease [Diachasmimorpha longicaudata entomopoxvirus] Length = 206 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 8/122 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59 M N+ D E G D D + + E +DD L + Sbjct: 27 MANNIAWLDLEMTGLDPETDNILEIGCFITNDALEITSPIFHMIIHNSDDILKSMDKWCK 86 Query: 60 ITGITP---QKALRDGVVEAEFSRRIHQFF----SVPNTCIIGYNNIRFDDYYSRNIFYR 112 T + + +++ QFF S I+ N+I D + R Sbjct: 87 KTHTKNGLITEVMNSKTSLEVAEKKLIQFFKAHASSDKAIILAGNSIYIDKGFLCEHMPR 146 Query: 113 NF 114 + Sbjct: 147 LY 148 >gi|322385196|ref|ZP_08058843.1| DNA polymerase III [Streptococcus cristatus ATCC 51100] gi|321270820|gb|EFX53733.1| DNA polymerase III [Streptococcus cristatus ATCC 51100] Length = 814 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 39/206 (18%) Query: 4 HFVIYDYETFGRDVALDRPAQFA-----GVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + + D E A G+ + ++ E D Sbjct: 7 KYAVIDLEATSASSN-------AKIIQIGIVIIENGVICQTYET---DVNPHEDLDEHIK 56 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TG+ Q+ + ++ +R +++ I +N++FD + +D Sbjct: 57 QLTGLDDQRLRQAP-DFSQVAREVYELIED---AIFVAHNVKFDANLLAEALFWEGFDLL 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R D +++ + Y + L +L I NAH A Sbjct: 113 T-------PRVDTVELAQVFYPTFD-------------KYALGNLCELLEIPLENAHTAL 152 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 AD AT L I++K +L + L + Sbjct: 153 ADAQATAQLFLKIQKKMARLPKALLE 178 >gi|91093385|ref|XP_971552.1| PREDICTED: similar to AGAP012804-PA [Tribolium castaneum] gi|270015360|gb|EFA11808.1| hypothetical protein TcasGA2_TC008587 [Tribolium castaneum] Length = 211 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 21/132 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54 N V D E G DVA D+ + A + D I + K + Sbjct: 34 NRVVWVDMEMTGLDVATDKIMEVACIITDGDLNIIAEGPDLIIHHPQNILDKMNEWCKTH 93 Query: 55 P------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 EA + I+ ++A + ++ + + N++ D + R Sbjct: 94 HSKSGLSEACLKSKISVEEAQDK------LMDFVAEYVTE-KVSPLAGNSVYMDRLFLRK 146 Query: 109 IFYRNFYDSYRW 120 R + Sbjct: 147 YMPRLHEYLHYR 158 >gi|72046790|ref|XP_780396.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus purpuratus] gi|115956149|ref|XP_001188154.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus purpuratus] Length = 196 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 21/134 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYL 52 + + V D E G D+ + A + D++ + + K D + Sbjct: 19 LKSRLVWVDLEMTGLDLDTCHIIEMACLITDQELNVVAEGPNIIIHQPDEILDKMNDWCV 78 Query: 53 PDP------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106 +AV + IT Q+A E E + ++ + P C + N+I D + Sbjct: 79 QHHTASGLVDAVKASKITLQQA------EYEMLSFVREY-TYPKLCPLAGNSIHVDKTFL 131 Query: 107 RNIFYRNFYDSYRW 120 + + Sbjct: 132 VKYMPQFMDHLHYR 145 >gi|190574880|ref|YP_001972725.1| oligoribonuclease [Stenotrophomonas maltophilia K279a] gi|190012802|emb|CAQ46431.1| putative oligoribonuclease [Stenotrophomonas maltophilia K279a] Length = 190 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 12/37 (32%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + D E G D D + A V D Q + Sbjct: 9 ERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAE 45 >gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group] Length = 252 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 28/189 (14%) Query: 6 VIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V +D ET + +F + V R+ +++S + A + Sbjct: 7 VFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPGDMSAVSKRFAAMV-- 64 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 + + RI G+N RFD R + + + Sbjct: 65 --DVDVASAP-SFDQVAERIFGVLD--GRVWAGHNIQRFD-----CHRIREAFAAIGRAA 114 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + D L+V+ A K+ LA GI +H + D Sbjct: 115 PEPVAIVDSLNVLA------------HDFGRRAGDLKMATLASYFGIG-KQSHRSLDDAR 161 Query: 183 ATLALVWLI 191 L ++ Sbjct: 162 MNLEVLKRC 170 >gi|118594944|ref|ZP_01552291.1| oligoribonuclease [Methylophilales bacterium HTCC2181] gi|118440722|gb|EAV47349.1| oligoribonuclease [Methylophilales bacterium HTCC2181] Length = 182 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60 N+ + D E G D D+ + A V D I + VF D L +A Sbjct: 7 NNLIWLDMEMSGLDPENDKVLEIAVVITDPFLTIIAESPVFVIHQEDAVLARMDAWNQGT 66 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + +K E +R++ +F + N + N+I D + Sbjct: 67 HGKSGLIEKVKNSKHNEEGVTRQLLEFMAKYVGKNKSPMCGNSICQDRRFMAKHMPELES 126 Query: 116 DSYRW 120 + Sbjct: 127 FFHYR 131 >gi|12855883|dbj|BAB30489.1| unnamed protein product [Mus musculus] Length = 274 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ + +F V ++ +IES + +P + + + Sbjct: 37 LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + IH+ ++ F Sbjct: 97 TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3] gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3] Length = 178 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 28/191 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET A V + + + + V I GI Sbjct: 2 NFIAMDFET--ASAKRYSACSLALTIVRDN-QIADEFYTLINPQTPFFWRN---VQIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E I F ++ +N RFD+ ++ + Sbjct: 56 HERDVADAP-TFPEVWEHIKGF--YTPEKLVIAHNNRFDNGVLKSTLEHYGIEPPA---- 108 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + LD + + G +++KL + A I+ + H+A D A Sbjct: 109 -----YQTLDTVVSSRRLL----------PGLSNYKLNTVCDALNIDLHHHHNALDDAQA 153 Query: 184 TLALVWLIREK 194 ++ + Sbjct: 154 CANILLYQGQH 164 >gi|254498741|ref|ZP_05111457.1| oligoribonuclease [Legionella drancourtii LLAP12] gi|254352069|gb|EET10888.1| oligoribonuclease [Legionella drancourtii LLAP12] Length = 173 Score = 52.9 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 7/105 (6%) Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGIT--PQ 66 E G D +R + A V D I VF A ++L +A G + + Sbjct: 2 EMTGLDPEENRIIEIATVVTDPHLNIIGEGPVFAIAQAKEHLDAMDAWNTKQHGQSGLVK 61 Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRN 108 + L V EA+ ++ F + N++ D + Sbjct: 62 RVLDSKVSEADAEQQTINFLKYYVDKGKSPMCGNSVCQDRRFLYK 106 >gi|307709187|ref|ZP_07645646.1| DNA polymerase III epsilon subunit [Streptococcus mitis SK564] gi|307620133|gb|EFN99250.1| DNA polymerase III epsilon subunit [Streptococcus mitis SK564] Length = 196 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R ++I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + + +F + ++GYN + D Sbjct: 58 TGITAETLKDAPPVE-KVIKDFQEFV--GSLPMVGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYEFFLESDQ 170 >gi|332185524|ref|ZP_08387272.1| exonuclease family protein [Sphingomonas sp. S17] gi|332014502|gb|EGI56559.1| exonuclease family protein [Sphingomonas sp. S17] Length = 191 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 55/214 (25%), Gaps = 35/214 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + FV+ D ET Q V ++ + E + I Sbjct: 3 SPDFVVIDVET--ACSRTSSICQIGIVGY-AAGVEVLAYETL---VDPCDDFSSFNIGIH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT L F+ + + ++ FD R+ Sbjct: 57 GITADHVLGKPT----FAALHPELAMHLGGRVTVAHSG-FDKGALGRACERDALPPIAAR 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D + + R + + KL LA +EH HDA +D Sbjct: 112 W------LDSVTIARRAW-------------PELPNHKLNTLAAFLELEH-RHHDALSDA 151 Query: 182 ----YATLALVWLIREKKPKLFEYLYDYRNKNQL 211 L + F R + ++ Sbjct: 152 RAAGQVVLRAMSATGLTLTDWFTPPLSARARRKV 185 >gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 53/204 (25%), Gaps = 28/204 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + AG+ V R + E+ + + I GI Sbjct: 5 NFIAIDFET--ATRKRASICE-AGICVVRNGKVAETRSWLIR--PEGNYYSYWNMQIHGI 59 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P E +I ++ ++ +N FD R+ ++ Sbjct: 60 RPSDTENAPE-FPEIWTKITEYLGECP--VLVAHNAIFDIGCIRHSLQFYHIKKPDITY- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +RA KL L I + H A D Sbjct: 116 --------YCSLRAARKLYNFDCN-----------KLDYLCDQFEIPYRLHHRAGDDAEM 156 Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207 L K D+ N Sbjct: 157 CARLFLREIRDAAKCDHENMDFCN 180 >gi|289168125|ref|YP_003446394.1| DNA polymerase III, epsilon chain [Streptococcus mitis B6] gi|288907692|emb|CBJ22529.1| DNA polymerase III, epsilon chain [Streptococcus mitis B6] Length = 196 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R ++I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + + +F ++GYN + D Sbjct: 58 TGITAETLKDAPPVE-KVIKDFQEFVGSLP--MVGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---STQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|229591814|ref|YP_002873933.1| hypothetical protein PFLU4398 [Pseudomonas fluorescens SBW25] gi|229363680|emb|CAY51043.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 180 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 25/193 (12%) Query: 2 TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H++I D E T G + + V+RQ +++ + F +P L P Sbjct: 1 MPHWLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQ-RFVRPLRRPLLTPFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116 +T IT E ++ + + G+ + +D + R+ Sbjct: 60 RQLTHITQANMDGA-APITEVWPLFERWLGQHHARLEGWASWGDYDRAQLELEWQRHG-- 116 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175 L A ++ L G++ H H Sbjct: 117 ---------------LASALAHTPHVNLKQRFAKARRLDKPLGLNGALQLAGMQFHGQQH 161 Query: 176 DAKADVYATLALV 188 A D T L+ Sbjct: 162 RALEDARNTARLL 174 >gi|323144276|ref|ZP_08078898.1| exonuclease [Succinatimonas hippei YIT 12066] gi|322415946|gb|EFY06658.1| exonuclease [Succinatimonas hippei YIT 12066] Length = 232 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 5/89 (5%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D+ET G D D V D +I+ + F + I ITP+ Sbjct: 50 LDFETTGLDFNEDLILSMGWV--DINRGEIDFSSGFHTFINIADKVKSHSAVINHITPEM 107 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96 L GV E ++ + II + Sbjct: 108 LL-HGVSLNEALNQLIEHIK--GRIIICH 133 >gi|238486688|ref|XP_002374582.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357] gi|317144078|ref|XP_003189562.1| RNA exonuclease Rex2 [Aspergillus oryzae RIB40] gi|220699461|gb|EED55800.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357] Length = 191 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 15/130 (11%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST---------EVFFCKPADDYLP 53 + V D E G D D+ Q D + ++ + + + Sbjct: 8 DPLVWIDCEMTGLDSEKDQIIQVCCFVTDANLQLLDPHGFETVIHASKTTMDNMSQWCID 67 Query: 54 DPEAVFITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 TG+T E +E I ++ P T ++ N++ D + Sbjct: 68 THGR---TGLTAAVLASTVTPESAASELLAYIQRYVPQPRTALLAGNSVHADKAFLSRGP 124 Query: 111 YRNFYDSYRW 120 Y + + Sbjct: 125 YAKVLEWLHY 134 >gi|149280749|ref|ZP_01886857.1| hypothetical protein PBAL39_05951 [Pedobacter sp. BAL39] gi|149228496|gb|EDM33907.1| hypothetical protein PBAL39_05951 [Pedobacter sp. BAL39] Length = 181 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 6/120 (5%) Query: 3 NHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + +I D E G + + + ++ Q +I KP + Sbjct: 6 DEILIVDIEATCWEGSNPDGMENDIIEIGIALLNVQTGEISENRGILVKPERSEV-GEFC 64 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T ITPQ + DGV E + + +S N + + + Y Y Sbjct: 65 TKLTTITPQMIIDDGVTFREACSILKKEYSSQNRAWASFGAYDLKQFQRQCAAYNIGYPF 124 >gi|238019461|ref|ZP_04599887.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748] gi|237864160|gb|EEP65450.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748] Length = 327 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 36/220 (16%) Query: 4 HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++++D E + Q V+++ + + ++ +F Y Sbjct: 2 NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIVDHFTMF---IKPQY 58 Query: 52 LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 LP +TGIT ++ GV + + + + D R Sbjct: 59 LPRMHKHVRELTGITSREL-DHGVPFKTAMQYFQ---NWCGDEYMLLSWGSDDILILREN 114 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + + + ++ + + + ++DL Sbjct: 115 LMLHRMKALSYDQ-------------WVDAQMIYSYQRYGTSQQYSVAHAMEDL--NIST 159 Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 EH++AH+A D T + + + L + N Sbjct: 160 EHLSAHNALHDAVFTAHICQKLDIPQGILHYDQIRKESSN 199 >gi|227495351|ref|ZP_03925667.1| exoribonuclease II [Actinomyces coleocanis DSM 15436] gi|226831221|gb|EEH63604.1| exoribonuclease II [Actinomyces coleocanis DSM 15436] Length = 207 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 28/140 (20%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 MT ++ V D E G DV D + A V D + ++ K P Sbjct: 1 MTINYPARPLVWIDCEMTGLDVEKDALVEVAVVVTDEELNLLDPGIDLLIK------PSA 54 Query: 56 EAVF-----------ITGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIR 100 EA+ +G+ L +G+ AE + +F ++ N+I Sbjct: 55 EALANMNDFVRNMHTTSGLLDD--LENGISLAEAEERVLAYVKKFVPQAKRGLLAGNSIG 112 Query: 101 FDDYYSRNIFYRNFYDSYRW 120 D + R + Sbjct: 113 TDKMFLERYMPRLMGHLHYR 132 >gi|291286506|ref|YP_003503322.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio acetiphilus DSM 12809] gi|290883666|gb|ADD67366.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio acetiphilus DSM 12809] Length = 174 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 7/119 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M V D +T G + + ++ D + E+F + I Sbjct: 11 MAQK-VYIDMKTSGISPSKGEIIEICALKPDVDLM---TYEMFHAYIKINSDISEIFTEI 66 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GI+ + GV + R F + C I +D + ++ + + Sbjct: 67 EGISKEMLDEHGVSIEDAIARFDMFVT---GCEIVSFVPEYDLTFLKDAYSKCGLIFNH 122 >gi|258621526|ref|ZP_05716559.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258627541|ref|ZP_05722318.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580123|gb|EEW05095.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258586144|gb|EEW10860.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 176 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 21/151 (13%) Query: 1 MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 M + V+ +D E T G + +D KI +F KP Sbjct: 1 MNYNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEK 54 Query: 50 DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 D + +TGITP+K + G E + + + F N + DD N Sbjct: 55 DEI-SLFCAELTGITPRKIEKQGRPLVEVLQSMVKNFGGSNKIYASW---GRDDLILINE 110 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 + N + + + ++ Sbjct: 111 CREKGIPVPFQEFLNLATLYRIQHRLKDKRI 141 >gi|300780594|ref|ZP_07090449.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030] gi|300533580|gb|EFK54640.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030] Length = 217 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 7/115 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A + D + ++ D L D + Sbjct: 17 DRIVWIDLEMTGLDPQRHVIVEVAALVTDAELNILDGGIDLVVHATDAELAEMDDFVTEM 76 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 G + ++ V E + + + + N+I D + R Sbjct: 77 HGSSGLTEQIKASTVALREAEEAVLELVDKHCGEHRPPLAGNSIATDRTFIRAHM 131 >gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9] gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9] Length = 223 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 65/220 (29%), Gaps = 31/220 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D ST F P + + EA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHSFVMEASERARL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 N + D + L GI N Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGIAFDNKE 180 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 AH A D T L I K KL + ++ K Sbjct: 181 AHSALYDTERTAELFCEIVNKWKKLGGWPLFESQTEEIDK 220 >gi|187933667|ref|YP_001886759.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] gi|187721820|gb|ACD23041.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] Length = 204 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 23/183 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET Q + + VD + I + + FF + +P A I G Sbjct: 2 KLLFFDTETTSIKP--GSICQLSYITVDASSKPQITTGKNFFFTVDE---MNPSAQEIHG 56 Query: 63 ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + +K L +G + + F + + +N+ FD + ++ D Sbjct: 57 FSLEKLYELSEGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + P + + KL+++ GI Sbjct: 115 HS-------------FCTMIYYKDICKIPKANGEVKNPKLEEVVTFLGINKDQITKTSDR 161 Query: 181 VYA 183 ++ Sbjct: 162 LFQ 164 >gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537] Length = 177 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 28/175 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + A V + ++ + V I GI Sbjct: 2 NFIAMDFET--ANHERHSAVSIALAIVRDD-KIVDEFYSL---IRPETYFSRRNVAIHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 L +E I F+ ++ +N FD+ + + Sbjct: 56 EEHDVLDAPK-FSELWPVIQPLFTEDK--LVVAHNAPFDNGVLKGTLNYYGLEE------ 106 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + LLD +R F P KL +A GI V+ H+A Sbjct: 107 ---PHYMLLDTVRTSRQFFPSFNN----------HKLNTVAENLGISLVHHHNAL 148 >gi|255549210|ref|XP_002515659.1| oligoribonuclease, mitochondrial, putative [Ricinus communis] gi|223545202|gb|EEF46711.1| oligoribonuclease, mitochondrial, putative [Ricinus communis] Length = 232 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G ++ +DR + A + D I ++ + + Sbjct: 74 LVWIDMEMTGLNIEVDRVLEIACIITDGNLTKSVEGPDLVIHQSKECLEQMGEWCQSHHA 133 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T +K L+ V E E ++ +F T ++ N++ D + + Sbjct: 134 ASGLT----EKVLQSTVSEREAETQVIEFVKRHVGTYTPLLAGNSVYVDFLFLKK 184 >gi|71900855|ref|ZP_00682972.1| Exonuclease [Xylella fastidiosa Ann-1] gi|71729379|gb|EAO31493.1| Exonuclease [Xylella fastidiosa Ann-1] Length = 193 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 13/126 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58 + D E G D D + A V D Q + F + L EA+ Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVL---EAMDEWNRN 70 Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 Q+ L + A+ F + N+I D + Sbjct: 71 QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQMPCLE 130 Query: 115 YDSYRW 120 + Sbjct: 131 RYFHYR 136 >gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80] gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80] Length = 224 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201 >gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52] gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52] Length = 212 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 8 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 67 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 68 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 127 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 128 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 168 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 169 AHSALYDTQKTAELFCTIVNQ 189 >gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44] gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44] Length = 209 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + A + V + + + D E + I Sbjct: 1 MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ L + E I++ + I+ +N +FD R D Y+ Sbjct: 56 GIQPKDVLHE-KTFDELWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D ++ A PD + KL +A G+E H A D Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152 Query: 182 YATLAL 187 + Sbjct: 153 ETCAKV 158 >gi|289706257|ref|ZP_06502619.1| exonuclease [Micrococcus luteus SK58] gi|289556980|gb|EFD50309.1| exonuclease [Micrococcus luteus SK58] Length = 208 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT- 61 V D E G +D + A + D + ++ +P+ L DP + Sbjct: 14 LVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSAAALEQMDPFVRDMHT 73 Query: 62 --GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105 G+ P+ A +G+ + + R+ ++ + ++ N + D + Sbjct: 74 TSGLLPELA--EGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLF 120 >gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH] gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH] Length = 271 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 23/188 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 ++D ET +A V D Q E F EA + I + Sbjct: 106 VFDTETTDI---YGYIISYAVVIQDMQSMDTEEIYDF---LNPKAKISEEAYEVHKIKQE 159 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 AE Q F N ++ +N+ +D + R + Sbjct: 160 DIEHKP-TFAEKKDEFLQIFD--NLDMVVGHNVLYDFGVLKRELERAEHFPNII------ 210 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + D M + R + +A G ++ N HDA DV TL Sbjct: 211 -DIPIFDTMYYSADVVVLEKKKMPRLEEC-------VAFFFGKQNANYHDALEDVKMTLK 262 Query: 187 LVWLIREK 194 + + ++ Sbjct: 263 VFNRLLQE 270 >gi|239917482|ref|YP_002957040.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC 2665] gi|281414027|ref|ZP_06245769.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC 2665] gi|239838689|gb|ACS30486.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC 2665] Length = 208 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA--DDYLPDPEAVFIT- 61 V D E G +D + A + D + ++ +P+ DP + Sbjct: 14 LVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSAAAFEQMDPFVRDMHT 73 Query: 62 --GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105 G+ P+ A +G+ + + R+ ++ + ++ N + D + Sbjct: 74 TSGLLPELA--EGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLF 120 >gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 218 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 59/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D +T F P + + + EA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGAILNKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ S + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 N + D + L I N Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACQTANIPFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTERTAELFCEIVNK 201 >gi|293395725|ref|ZP_06640007.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582] gi|291421662|gb|EFE94909.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582] Length = 222 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 66/265 (24%), Gaps = 52/265 (19%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 + D ET G D + A + + + C D EA+ I IT Sbjct: 5 VIDTETCGLD---GGIVEVASIDI-IDGQLANPMSDLVC---PDRPIGIEAMAIHHITEA 57 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126 + I ++ + +N FD + R Sbjct: 58 MVEGKPR----IAVAIGRYM---GSEYYVAHNAAFDRGVLPEMNGR-------------- 96 Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186 + ++ A P + + L + H A D Y T A Sbjct: 97 ----WICTVKLARALYPGI----KYGNQYLRYALNLEVQLPQDTTLYPHRALYDCYVTAA 148 Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245 L+ I + E + + + L K F + I +A Sbjct: 149 LLQRIIKDSGWSAEEMANITEQPVLLK---------------TFKFGKYRGQPIDRIAQE 193 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270 P Y ++ + L Sbjct: 194 DPGYLRWMLKSITDLSPDMKHTLKY 218 >gi|313836680|gb|EFS74394.1| exonuclease [Propionibacterium acnes HL037PA2] gi|314929914|gb|EFS93745.1| exonuclease [Propionibacterium acnes HL044PA1] gi|314972342|gb|EFT16439.1| exonuclease [Propionibacterium acnes HL037PA3] Length = 202 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 17/113 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 V D E G D+A D + A + D Q KP +L + Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWL-----EHMNDFV 56 Query: 65 PQKALRDGVVE------------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + G++E + IH + + N I D + Sbjct: 57 RDMHTKSGLLEELDKGLTMMQAQEQVLDYIHTYVPQAGKAPLAGNTIGTDRSF 109 >gi|323223540|gb|EGA07861.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 60 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 7/64 (10%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KALR 70 Sbjct: 57 MVAD 60 >gi|89052623|ref|YP_508074.1| exonuclease [Jannaschia sp. CCS1] gi|88862172|gb|ABD53049.1| Exonuclease [Jannaschia sp. CCS1] Length = 196 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 28/198 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET + A Q V +S + P + GI+ Sbjct: 17 FIAVDVET--ANNAQGSICQIGLCCVGSD----DSLNTVSTLIDPEQSFSPFNTDLHGIS 70 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + ++ + + ++ RFD+ R W Sbjct: 71 AETVNGAP-TFPQAYASLYPVLNAHR---LVQHS-RFDEAAFTAACARYDVPMVTSHWT- 124 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D + + R + GA L L A G+ + HDA D A+ Sbjct: 125 -----DSVKIARQAWP----------ELKGAGGHGLASLKKALGLSF-HHHDAGEDARAS 168 Query: 185 LALVWLIREKKPKLFEYL 202 ++ + K +L Sbjct: 169 ATVILRAEARISKAVAHL 186 >gi|150018815|ref|YP_001311069.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149905280|gb|ABR36113.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 255 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 50/177 (28%), Gaps = 19/177 (10%) Query: 21 RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 Q +++D ++++ + KP P +T IT K + Sbjct: 40 EIIQIGAIKLDNNFQEVSTFNSL-VKPTLYKTIHPYVENLTKITYDKVSSC-KNFINVHK 97 Query: 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 +F + + + YRN + + I Sbjct: 98 AFLEFIGDDDVLLCVWGVGDI------KELYRNLGFYNLSTS--------YISKYIDIQK 143 Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197 ++ ++ P ++ L N + HDA D Y T + I K K Sbjct: 144 YASKYLKAPKNSRIGLRNAVEIL---NIPIYSEFHDALNDAYYTSEIFKRIYNKYMK 197 >gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] Length = 309 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E IE KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIIEKVHYLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD R+ + Y Sbjct: 57 RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVL-----RSTLELYNIK-- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + KL + G + HDA AD A Sbjct: 106 --MPSFEYICTMKLSKNFYSNIDN----------AKLNTVNNFLGYKF-QHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|149185171|ref|ZP_01863488.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] gi|148831282|gb|EDL49716.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] Length = 260 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 16/123 (13%) Query: 8 YDYETFGRDVALDRPAQFAG--VRVDRQWEKI------ESTEVFFCKPADDYLPDPEAVF 59 D ET G D +FAG + VDRQ + + + Sbjct: 2 IDLETEGFDAQYHHILEFAGAMIEVDRQGRILSVEGPKGGFN------DPGRPIERKIAE 55 Query: 60 ITGITPQKALRDGVVEAEFSRRI--HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGIT + + + + I N + + + D Sbjct: 56 LTGITDEMVAGVRLSPRKLADWIGQADACLSFNAAFDRVHLEELVPEVGKMAWICAMADV 115 Query: 118 YRW 120 Sbjct: 116 NWR 118 >gi|330973293|gb|EGH73359.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT] Length = 180 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I Q ++ + ++ S I+G+ + Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 Y R LD + ++ L G++ H Sbjct: 103 YDRQQLEEEWRHHHLDSALSSMPHVNLKQRFAQARHLQKPIGLNSALQLAGMQFSGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|313773620|gb|EFS39586.1| exonuclease [Propionibacterium acnes HL074PA1] gi|313793857|gb|EFS41881.1| exonuclease [Propionibacterium acnes HL110PA1] gi|313801249|gb|EFS42500.1| exonuclease [Propionibacterium acnes HL110PA2] gi|313811456|gb|EFS49170.1| exonuclease [Propionibacterium acnes HL083PA1] gi|313831196|gb|EFS68910.1| exonuclease [Propionibacterium acnes HL007PA1] gi|313834219|gb|EFS71933.1| exonuclease [Propionibacterium acnes HL056PA1] gi|313840029|gb|EFS77743.1| exonuclease [Propionibacterium acnes HL086PA1] gi|314963788|gb|EFT07888.1| exonuclease [Propionibacterium acnes HL082PA1] gi|314974073|gb|EFT18169.1| exonuclease [Propionibacterium acnes HL053PA1] gi|314976638|gb|EFT20733.1| exonuclease [Propionibacterium acnes HL045PA1] gi|314984301|gb|EFT28393.1| exonuclease [Propionibacterium acnes HL005PA1] gi|315079637|gb|EFT51630.1| exonuclease [Propionibacterium acnes HL053PA2] gi|315081132|gb|EFT53108.1| exonuclease [Propionibacterium acnes HL078PA1] gi|315095417|gb|EFT67393.1| exonuclease [Propionibacterium acnes HL038PA1] gi|327328524|gb|EGE70286.1| oligoribonuclease [Propionibacterium acnes HL096PA2] gi|327444311|gb|EGE90965.1| exonuclease [Propionibacterium acnes HL043PA2] gi|327444807|gb|EGE91461.1| exonuclease [Propionibacterium acnes HL043PA1] gi|327452117|gb|EGE98771.1| exonuclease [Propionibacterium acnes HL092PA1] gi|328759959|gb|EGF73543.1| oligoribonuclease [Propionibacterium acnes HL099PA1] Length = 202 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 19/129 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVFI 60 V D E G D+A D + A + D Q KP +L + Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHT 61 Query: 61 T---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 T G+T +A + I + + N I D + Sbjct: 62 TSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMP 115 Query: 112 RNFYDSYRW 120 + + Sbjct: 116 KLASYVHYR 124 >gi|188587656|ref|YP_001921717.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] gi|188497937|gb|ACD51073.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] Length = 204 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 23/183 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET Q + + VD + I + + FF + +P A I G Sbjct: 2 KLLFFDTETTSIKP--GSICQLSYITVDASSKPQITTGKNFFFTVDE---MNPSAQEIHG 56 Query: 63 ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + +K L +G + + F + + +N+ FD + ++ D Sbjct: 57 FSLEKLYELSEGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D + P + + KL+++ GI Sbjct: 115 HS-------------FCTMMYYKDICKIPKANGEIKNPKLEEVVNFLGITKDQITKTSDR 161 Query: 181 VYA 183 ++ Sbjct: 162 LFQ 164 >gi|154488091|ref|ZP_02029208.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis L2-32] gi|154083564|gb|EDN82609.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis L2-32] Length = 212 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 14/135 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL----PDPEAVFI 60 + D ET G + + + + IE + F C D L DP+ + + Sbjct: 26 LLWIDTETTGISRTNAKLLEIGMIVTNLDG--IEEHDRFICPVRPDKLSLYDLDPKVLRM 83 Query: 61 T---GITPQKALRDGVVE--AEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSRNIFYR 112 G+ + A +R + F + + + N+ +D N Sbjct: 84 HLDNGLLDTVMETEPEEFGYANVARNLGAFLDTEASQYVLHPAGTNVDYDIDVLTNQLGP 143 Query: 113 NFYDSYRWSWDNGNS 127 + + + N Sbjct: 144 HLHPDWLRQLTNHRK 158 >gi|304414192|ref|ZP_07395560.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella insecticola LSR1] gi|304283406|gb|EFL91802.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella insecticola LSR1] Length = 181 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 14/38 (36%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G DR + A + D +E Sbjct: 5 KNNLIWIDLEMTGLYPEHDRIIEIATLVTDANLNLLEE 42 >gi|238060285|ref|ZP_04604994.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] gi|237882096|gb|EEP70924.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] Length = 303 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/197 (10%), Positives = 45/197 (22%), Gaps = 19/197 (9%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D E + R A V D +A GIT + Sbjct: 86 FDLEGTLPEPMETRIVSAALVHSDG--------TTREWLVDPGVPIPADATARHGITDEM 137 Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD-- 123 G + + + ++ + +D R+ + W Sbjct: 138 VRTGGRPARDALAELGTAIAKLIADSTPLVAFCAPYDVTALHTELARHGLPALDWDRAVV 197 Query: 124 -NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA------TSFKLQDLALANGIEHVNAHD 176 + + ++ D ++ + +LA + H Sbjct: 198 IDPSVLHQQVEPRWYGRRQLGDLCRYYEVTLDNAHDAASDARAAAELARSIAARHERIAR 257 Query: 177 AKADVYATLALVWLIRE 193 + D + W + Sbjct: 258 MRPDALHQAQIGWHAEQ 274 >gi|115485705|ref|NP_001067996.1| Os11g0525900 [Oryza sativa Japonica Group] gi|77551213|gb|ABA94010.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113645218|dbj|BAF28359.1| Os11g0525900 [Oryza sativa Japonica Group] Length = 319 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 45/185 (24%), Gaps = 6/185 (3%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D E GR + +FA V VD E++ + +P + Sbjct: 23 FVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHRELTDYCREL 82 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGI GV E R + + + Sbjct: 83 TGIAQADV-DAGVDLREALRAHDAWLDARGVKNAAGGGGGGGGFAVVTWGDWDCRTMLEG 141 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAKA 179 D + + GA L + LA+A H Sbjct: 142 ECRFKGIIGDGKPEYFDRWINLKVPFRQVFDRGGARRIGLEEALAVAGLAFEGRPHSGLD 201 Query: 180 DVYAT 184 D T Sbjct: 202 DARNT 206 >gi|28198432|ref|NP_778746.1| oligoribonuclease [Xylella fastidiosa Temecula1] gi|182681104|ref|YP_001829264.1| oligoribonuclease [Xylella fastidiosa M23] gi|32129804|sp|Q87E07|ORN_XYLFT RecName: Full=Oligoribonuclease gi|28056516|gb|AAO28395.1| oligoribonuclease [Xylella fastidiosa Temecula1] gi|182631214|gb|ACB91990.1| Exonuclease RNase T and DNA polymerase III [Xylella fastidiosa M23] gi|307579552|gb|ADN63521.1| oligoribonuclease [Xylella fastidiosa subsp. fastidiosa GB514] Length = 193 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 13/126 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58 + D E G D D + A V D Q + F + L EA+ Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVL---EAMDEWNRN 70 Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 Q+ L + A+ F + N+I D + Sbjct: 71 QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFLHRQMPCLE 130 Query: 115 YDSYRW 120 + Sbjct: 131 RYFHYR 136 >gi|91223788|ref|ZP_01259052.1| hypothetical protein V12G01_18627 [Vibrio alginolyticus 12G01] gi|91191280|gb|EAS77545.1| hypothetical protein V12G01_18627 [Vibrio alginolyticus 12G01] Length = 176 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 20/151 (13%) Query: 3 NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E + G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGITP+K + G E + + + F N + DD + Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIFASW---GRDDLILLEECKQ 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143 ++ + N + + + + ++ Sbjct: 114 KGIEAPFTEFINLATLYRIQNRLKDKRIGHR 144 >gi|261335679|emb|CBH18673.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972] Length = 366 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 21/87 (24%), Gaps = 5/87 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61 V D ET G D A V + S F A + Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPTKKVSSSAYRVH 163 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV 88 +T + R A + F S Sbjct: 164 KLTSKVLERQP-PFAAILPDLAAFLSD 189 >gi|119474830|ref|ZP_01615183.1| oligoribonuclease [marine gamma proteobacterium HTCC2143] gi|119451033|gb|EAW32266.1| oligoribonuclease [marine gamma proteobacterium HTCC2143] Length = 195 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 13/36 (36%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G + A D + A + D I Sbjct: 15 NLIWIDLEMTGLEPATDHIIEIATIVTDSDLNTIAE 50 >gi|238791781|ref|ZP_04635418.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909] gi|238728885|gb|EEQ20402.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909] Length = 219 Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 68/265 (25%), Gaps = 54/265 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F I D ET G + A + VD + D +A+ I I Sbjct: 3 FRIIDTETCGL---AGGIVEVASIDLVDGALA-----NPMSDLISPDRPISIDAMVIHHI 54 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + I ++ + + +N R W Sbjct: 55 TEEMVEGKPR----IAVAIRRY--QGSPYYVAHNAPFD----------RGVLPEMGGQW- 97 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L + R +Y P + + +++ H A D Y Sbjct: 98 -----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYV 143 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243 T AL+ I + + + + PL+ + FG R + Sbjct: 144 TAALLQRI--MQDSGWN-----------AEQMAEITQQPLLLQTFKFGKYRGKSIEQIAR 190 Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268 P Y ++ + L Sbjct: 191 -QDPDYLRWMLASISDLTPDMRYTL 214 >gi|281337568|gb|EFB13152.1| hypothetical protein PANDA_015995 [Ailuropoda melanoleuca] Length = 365 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 53/211 (25%), Gaps = 23/211 (10%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRNFY 115 I + R+ ++ + + + Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGL 263 Query: 116 D--SYRWSWDNGNSRWDL---------LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164 Y W N L+ + L D+ Sbjct: 264 PVADYFKQWINLKKVLKRGVPSGRTASLEEQAGKGESKSHCKKSSFAMGCWPKNGLLDMN 323 Query: 165 LANGIEH-VNAHDAKADVYATLALVWLIREK 194 ++H H D ++ + + Sbjct: 324 KGLSLQHIGRPHSGIDDCKNIANIMKTLAYQ 354 >gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacterium abscessus ATCC 19977] gi|169240590|emb|CAM61618.1| Probable oligoribonuclease [Mycobacterium abscessus] Length = 208 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 42/153 (27%), Gaps = 10/153 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D+ D+ + A + D + D L P + Sbjct: 6 DELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPPVVADM 65 Query: 61 T---GITPQ---KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G+T + + EA I Q + T + N+I D + Sbjct: 66 HAKSGLTKEVRTSVVTLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFI--ARDMPE 123 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 D++ S L + + Sbjct: 124 LDAFLHYRMIDVSSIKELCRRWYPRIYFGQPDK 156 >gi|158341366|ref|YP_001522531.1| exonuclease [Acaryochloris marina MBIC11017] gi|158311607|gb|ABW33217.1| exonuclease [Acaryochloris marina MBIC11017] Length = 194 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 8/148 (5%) Query: 5 FVIYDYE-----TFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58 ++I D E TF + V V+ E I+ VF KP Sbjct: 11 YLIVDLEATCCNTFSIPHKETETIEIGAVIVESVGLEIIDEFTVFI-KPIRHPKLTDFCT 69 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T I + ++F + + R Y Sbjct: 70 ELTTIKQTDLEDAP-TFPQAVGTFKRWFEQYENSVFCSWGDYDKNQLERESKYHKIPYPM 128 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGI 146 N ++ L + Y + + Sbjct: 129 GEEHFNLKKQFSLALRTKKHYGMAKALM 156 >gi|71650868|ref|XP_814123.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70879069|gb|EAN92272.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 391 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 38/345 (11%), Positives = 76/345 (22%), Gaps = 53/345 (15%) Query: 8 YDYE-----TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D E FG D + +F ++ P + E +T Sbjct: 90 FDLEFSGPPVFGPDGPTEDIIEFGFY-----SPAKDTVFSCLVNPTNGRRVSQEVTALTN 144 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDS-YRW 120 IT + ++G+ E ++ + P + G N + + + Sbjct: 145 ITQEMLEKEGLPFPEAWEKVMETLMTPEPQELPGAENRLLVLSHGGKLADVSLIKWTLEA 204 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 D I P + S+ L DL + AH A Sbjct: 205 HGLELPPALVFGDTFHFIRDAHRRRPVTPDKHP--PSWALADLVQWLKIPPTLPAHRAGN 262 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS--GMFGASRSNT 237 D T ++ LY + L + + ++ Sbjct: 263 DAKMT--------------WDALYHTLERYGDEDLTPREQLVSRFFDEEAREVMGQKNKR 308 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297 I + + L +F+ Sbjct: 309 RFI---------ESDGTLATENAKTEASMGLSLDLDFDEIFSPG-------------GKR 346 Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342 K + K+E + Q +++ Sbjct: 347 KKAEASFTVSEAKQEDEYTDTEGRDDIRRRAKEVEQHPLVQEFLI 391 >gi|71274937|ref|ZP_00651225.1| Exonuclease [Xylella fastidiosa Dixon] gi|71898826|ref|ZP_00680994.1| Exonuclease [Xylella fastidiosa Ann-1] gi|170729792|ref|YP_001775225.1| oligoribonuclease [Xylella fastidiosa M12] gi|71164669|gb|EAO14383.1| Exonuclease [Xylella fastidiosa Dixon] gi|71731412|gb|EAO33475.1| Exonuclease [Xylella fastidiosa Ann-1] gi|167964585|gb|ACA11595.1| oligoribonuclease [Xylella fastidiosa M12] Length = 193 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 13/126 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58 + D E G D D + A V D Q + F + L EA+ Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVL---EAMDEWNRN 70 Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 Q+ L + A+ F + N+I D + Sbjct: 71 QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQMPCLE 130 Query: 115 YDSYRW 120 + Sbjct: 131 RYFHYR 136 >gi|327284033|ref|XP_003226743.1| PREDICTED: ERI1 exoribonuclease 2-like [Anolis carolinensis] Length = 260 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 20/203 (9%) Query: 5 FVIYDYETFGRDVALDR-------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 +I D+E+ DR +F V ++ +IES + +P + L Sbjct: 38 LIIIDFEST---CWNDRRKCYSQEIIEFPAVLLNTSDGEIESEFHMYVQPQEHPLLSEFC 94 Query: 58 VFITGITPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNI--RFDDYYSRNIFY 111 +TGIT + DGV +FS+ I + N ++ + + + Sbjct: 95 TELTGITQSQV-DDGVPLHICLSQFSKWIQKIQKEKNIIFTSGHSSCAASEGKLCAFVTW 153 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 ++ ++ + D++ + + SR LQD+ + Sbjct: 154 SDWDLGVCLHYECKRKQLRKPDILNSWIDLRATYKVFYSRKPQGLKGALQDVGIIFA--- 210 Query: 172 VNAHDAKADVYATLALVWLIREK 194 H D T L W + Sbjct: 211 GREHSGLDDSRNTAHLAWRMIRD 233 >gi|330802757|ref|XP_003289380.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum] gi|325080536|gb|EGC34087.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum] Length = 187 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 7/116 (6%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60 + V D E G D+ D + A + D + IE +++ L + I Sbjct: 11 SQRIVWVDLEMTGLDITKDCILEMACIITDSELNIIEKGPELVIHRSNEVLESMNSWCID 70 Query: 61 -TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIF 110 G + + + E + F + N++ D + Sbjct: 71 HHGKSGLTDRVKNSKITIEEAQLEMFNFIEKHVGKEQAPLAGNSVYQDRKFLEKEM 126 >gi|78484978|ref|YP_390903.1| oligoribonuclease [Thiomicrospira crunogena XCL-2] gi|123555812|sp|Q31HZ4|ORN_THICR RecName: Full=Oligoribonuclease gi|78363264|gb|ABB41229.1| Exonuclease [Thiomicrospira crunogena XCL-2] Length = 184 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 N+ + D E G D D+ + A V D + + Sbjct: 5 NNLIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAE 41 >gi|225435975|ref|XP_002271328.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera] Length = 245 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G +V +DR + A + D I T+ + Sbjct: 66 LVWIDLEMTGLNVEVDRILEIACIITDGNLIKSVEGPDLVIHQTKECLDNMGEWCQSHHS 125 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T K LR + E E +++ +F T ++ N++ D + + Sbjct: 126 ASGLTK----KVLRSTISEQEAEKQVIEFVKRNVGTYTPLLAGNSVYMDFLFLKK 176 >gi|42522865|ref|NP_968245.1| oligoribonuclease [Bdellovibrio bacteriovorus HD100] gi|39574061|emb|CAE79238.1| Oligoribonuclease [Bdellovibrio bacteriovorus HD100] Length = 175 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50 N D E G DV + + A + D ++++E+ E +P Sbjct: 1 MNKLFWIDMEMTGLDVEKEVIIEVAAIVTDLNFKELETFETVVKQPQKY 49 >gi|38232702|ref|NP_938469.1| hypothetical protein DIP0068 [Corynebacterium diphtheriae NCTC 13129] gi|38198960|emb|CAE48575.1| Hypothetical protein DIP0068 [Corynebacterium diphtheriae] Length = 102 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 F + D T G + D + A VR D ++ ++S D Sbjct: 31 FAVIDTGTTGFNKRYDHIIELAAVRADAYFKPVDSWHAL---LNPDT 74 >gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium ulcerans Agy99] gi|166216272|sp|A0PU74|ORN_MYCUA RecName: Full=Oligoribonuclease gi|118571142|gb|ABL05893.1| oligoribonuclease Orn [Mycobacterium ulcerans Agy99] Length = 215 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 26/163 (15%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M V D E G D+ D+ + A + D + D + + + Sbjct: 1 MREELVWIDCEMTGLDLGPDKLIEIAALVTDADLNILGDGV--------DVVIHADDAAL 52 Query: 61 TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + R G+ EA I + P T + N+I D Sbjct: 53 SSMVDVVADMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRS 112 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 + D++ S L + + Sbjct: 113 FI--ARDMPALDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153 >gi|328710082|ref|XP_001950486.2| PREDICTED: oligoribonuclease, mitochondrial-like [Acyrthosiphon pisum] Length = 212 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60 ++ V +D E G D + A + D+ + + + +D L + E + Sbjct: 37 HNIVWFDGEMTGLDCNHHTLIEAAIIITDKNLKVLAESPNIIIHQSDKVLENMEEWSKKH 96 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQF---FSVPNTCIIGYNNIRFDDYYSRN 108 GI+ + + + + + +++F F+ C + N+I D + R Sbjct: 97 HGISGLTENVRKSNISIEQADQMLYEFIKPFAPKGVCPLAGNSIHMDRTFIRK 149 >gi|260912289|ref|ZP_05918840.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295] gi|260633590|gb|EEX51729.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295] Length = 165 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 26/175 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + + V V + + + S +P +Y + V + Sbjct: 1 MKDFAAIDFET--ANFRRESVCSVGLVLV-EEGKVVGSYYHLI-QPTPNY-FEERCVTVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + I + +N FD+ + F + Sbjct: 56 GLTTADTNGQP-TFPDVWAEIAPLIRNK---PLVAHNKAFDESCLKAAFAAYDME----- 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + G FKL +A G E H Sbjct: 107 ----YPDYPFYCTLLTARHKLKEA--------GLADFKLPTVASHCGYELDKHHH 149 >gi|68163427|ref|NP_001020160.1| three prime repair exonuclease 1 [Rattus norvegicus] gi|60688197|gb|AAH91242.1| Trex1 protein [Rattus norvegicus] gi|149018474|gb|EDL77115.1| rCG26064 [Rattus norvegicus] Length = 316 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 29/221 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---------------FFCK 46 + D E G + + + + V R + S Sbjct: 11 MQTLIFLDLEATGLPYSQPKITELCLLAVHRHALENSSMSEGQPPPVPKPPRVVDKLSLC 70 Query: 47 PADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIRFD 102 A A ITG+T G + + Q F C++ +N R+D Sbjct: 71 IAPGKPCSSGASEITGLTTAGLEAHGRQRFNDNLATLLQVFLQRQPQPCCLVAHNGDRYD 130 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + S +G D + ++ + + PS S+ L Sbjct: 131 FPLLQAELASLSV----ISPLDGTFCVDSIAALK-----TLEQASSPSEHGPRKSYSLGS 181 Query: 163 L-ALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + G ++H A+ DV A L++ + + + Sbjct: 182 IYTRLYGQAPTDSHTAEGDVLALLSICQWKPQALLQWVDKH 222 >gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA 2018] Length = 317 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 29/191 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F D+ET + + P V V + +E + + P + I GI Sbjct: 13 KFTAIDFET--ANEKRNSPCSIGIVVV-KDGHVVEKSHHLIR--PKEMRFMPINIGIHGI 67 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P ++ + +I +F ++ +N FD R + +++ Sbjct: 68 RPAMVEKEPE-FDKVWEKIKHYFDD---TLVIAHNASFDISVLRKSAELYNIELPEFNY- 122 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + + R Y G + KL + G E HDA D A Sbjct: 123 -----ICTMKLARNFY-------------KGIENAKLNTVNNFLGYEF-RHHDALYDALA 163 Query: 184 TLALVWLIREK 194 ++ I ++ Sbjct: 164 CSNIMLSISKE 174 >gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] Length = 224 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201 >gi|38234384|ref|NP_940151.1| oligoribonuclease [Corynebacterium diphtheriae NCTC 13129] gi|48428192|sp|P61650|ORN_CORDI RecName: Full=Oligoribonuclease gi|38200647|emb|CAE50343.1| oligoribonuclease [Corynebacterium diphtheriae] Length = 210 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 8/118 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT- 61 + V D E G ++ + A + D I + L + + T Sbjct: 10 DRLVWIDLEMTGLELDRHVIVEVAALITDADLNIIGEGVDLVVHATPEQLAEMDDFVTTM 69 Query: 62 GITP---QKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 + ++ V E + + + + N+I D + R R Sbjct: 70 HTSSGLLEEIKASTVSLQEAEDAVLALIAQHCDPEHPAPLAGNSIATDRSFIRAQMPR 127 >gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568] gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568] Length = 211 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 29/212 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + P ++ IES E + +P + GI P Sbjct: 11 VAIDFET--ANEQRASPCSIGLAWINDG--VIESVEHHYIRP-PGMRFASFNIAFHGIGP 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ EF + + +N FD RN D Y ++ Sbjct: 66 EQVEDA----EEFPAVLAAIAPRLEGRTVLAHNAAFDVSVI-----RNTCDHYGLTY--- 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 +D L ++ WP S KL ++ G+ HDA D +A Sbjct: 114 -PEFDYLCTVKLAQIS------WP----EFPSHKLNNVCAELGVAF-RHHDAAEDAFACA 161 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217 ++ + ++ + ++ Sbjct: 162 SVALAAAQVHQAADCRALADASRLTMGRVWRD 193 >gi|313884945|ref|ZP_07818697.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619636|gb|EFR31073.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 199 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 28/183 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E + + Q + VR +Q +++ + F D+ +TG Sbjct: 5 KDYIAFDLEFTSFE-EDSQIIQVSAVRF-KQGQEVAHFDSF---VNTDHAIPSFISGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + ++ F +IGYN ++ D + Sbjct: 60 ITLDQIQAAPKIDT-VMNEFKDFVGDLP--LIGYNALKSDLPLLKANNLDL--------- 107 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + + D+ + R G + LQ +A I+ H++ D Sbjct: 108 -DAQYQIDVYEEARNRRDSYLAGSR---------GLSLQAVANYFKIK-GRGHNSLNDAR 156 Query: 183 ATL 185 T Sbjct: 157 MTA 159 >gi|242014471|ref|XP_002427913.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis] gi|212512397|gb|EEB15175.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis] Length = 386 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 81/258 (31%), Gaps = 27/258 (10%) Query: 5 FVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V+ D+E + +DR +F V V+ + +KIE +CKP + + +TG Sbjct: 105 YVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCMELTG 164 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN--------TCIIGYNNIRFDDYYSRNIF---- 110 IT ++ + + + N + N S+ + Sbjct: 165 ITQEQVDNA-ETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYSNVP 223 Query: 111 -------YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + N +++ + G +R L ++ + D + L + Sbjct: 224 IPKWGKTWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGRPHCGLDDAKNIARILLKM 283 Query: 164 ALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ--NMT 221 +N A + + I + + + +K+ + + + Q Sbjct: 284 IYDGSNIQINERLASVRR---VNINKNINDDDTEDSRTTLNDGDKSNMEDMDEEQIPKFK 340 Query: 222 PLVHVSGMFGASRSNTAL 239 +V + ++ + Sbjct: 341 VKTYVQSINSTGKTYNRI 358 >gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] Length = 221 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 56/199 (28%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D +T F P + + EA+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAILHKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I + + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEDTALKEIFKQIRKEQKNADCSRAIMVAHNANFDHSFVMAAAERAKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + ++ AH Sbjct: 140 KRNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------TANIPFDNKEAH 182 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 183 SALYDTERTAELFCKIVNK 201 >gi|254281582|ref|ZP_04956550.1| oligoribonuclease [gamma proteobacterium NOR51-B] gi|219677785|gb|EED34134.1| oligoribonuclease [gamma proteobacterium NOR51-B] Length = 180 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 17/130 (13%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLP- 53 + + D E G R + A + D + I ++ K + + Sbjct: 5 QNLIWVDLEMTGLVPEEHRVIEIATIVTDSALNELAQGPVLAIHQSDAELSKMDEWNVNT 64 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 + + + G+ E F + N+I D + Sbjct: 65 HTGSGLV-----DRVKSSGLDEGAAVSETLAFLKEWVSAGASPMCGNSICQDRRFMARHM 119 Query: 111 YRNFYDSYRW 120 + Sbjct: 120 PELEAYFHYR 129 >gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium avium subsp. paratuberculosis K-10] gi|48428193|sp|P61651|ORN_MYCPA RecName: Full=Oligoribonuclease gi|41396774|gb|AAS04637.1| hypothetical protein MAP_2320 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 215 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 42/155 (27%), Gaps = 20/155 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D+ + A + D + + ADD + Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIH-ADDAALAAMGEVV 59 Query: 61 TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 T + R G++ E I P T + N+I D + Sbjct: 60 T----EMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIV 115 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D+Y S L + Sbjct: 116 R--DMPALDAYLHYRMIDVSSIKELCRRWYPRIYF 148 >gi|332525250|ref|ZP_08401423.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2] gi|332108532|gb|EGJ09756.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2] Length = 186 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 + + D E G A DR + A V D Q VF +D L +A Sbjct: 11 QNLIWIDLEMTGLYPATDRIIEIAVVVTDPQLTVRVEGPVFAVHQSDATLDAMDAWNKGT 70 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + V EAE R +F + N+I D + N + Sbjct: 71 HGRSGLIDRVKASTVDEAEAEARTIEFLQRYVPRGKSPMCGNSICQDRRFLANYMPKLEA 130 Query: 116 DSYRW 120 + Sbjct: 131 FFHYR 135 >gi|330954430|gb|EGH54690.1| exonuclease [Pseudomonas syringae Cit 7] Length = 180 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 7/120 (5%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116 +T I Q ++ + ++ S I+G+ + +D + ++ D Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRQHHLD 118 >gi|327329611|gb|EGE71367.1| oligoribonuclease [Propionibacterium acnes HL096PA3] Length = 202 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 19/129 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVFI 60 V D E G D+A D + A + D Q KP +L + Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHT 61 Query: 61 T---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 T G+T +A + I + + N I D + Sbjct: 62 TSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMP 115 Query: 112 RNFYDSYRW 120 + + Sbjct: 116 KLESYVHYR 124 >gi|269963670|ref|ZP_06177992.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831582|gb|EEZ85719.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 176 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 20/151 (13%) Query: 3 NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNENGVGRTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGITP+K + G E + + + F N + DD + Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW---GRDDLILLEECQQ 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143 D+ + N + + + + ++ Sbjct: 114 KGIDAPFTEFINLATLYRIQNRLKEKRIGHR 144 >gi|238569519|ref|XP_002386676.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553] gi|215439222|gb|EEB87606.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553] Length = 172 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%) Query: 47 PADDYLPD-PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + +P P A+ + GI + + + + ++ F + + + GYN +FD + Sbjct: 13 LNPEGIPSHPMALQLHGIQDAELVAPLPTFSAHAEQLRSFLA--GSIMTGYNITKFDLAF 70 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 F+R +W +D + F P + + Sbjct: 71 LTAEFHRCGI-----TWSPAGEGIGTIDTLALYRRFRPQEYKRGGKL-------FSAYLH 118 Query: 166 ANGIEHVNAHDAKADVYATLALVWLI 191 G AH+A+AD + L L++ + Sbjct: 119 FVGGWQTQAHNAEADAFTALRLLYAM 144 >gi|145579949|pdb|2O4G|A Chain A, Structure Of Trex1 In Complex With A Nucleotide gi|145579950|pdb|2O4G|B Chain B, Structure Of Trex1 In Complex With A Nucleotide gi|145579951|pdb|2O4G|C Chain C, Structure Of Trex1 In Complex With A Nucleotide gi|145579952|pdb|2O4G|D Chain D, Structure Of Trex1 In Complex With A Nucleotide gi|206581855|pdb|3B6O|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And An Inhibitor Ion (Lithium) gi|206581856|pdb|3B6O|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And An Inhibitor Ion (Lithium) gi|206581857|pdb|3B6O|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And An Inhibitor Ion (Lithium) gi|206581858|pdb|3B6O|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And An Inhibitor Ion (Lithium) gi|206581859|pdb|3B6P|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And Inhibitor Ions (Sodium And Zinc) gi|206581860|pdb|3B6P|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And Inhibitor Ions (Sodium And Zinc) gi|206581861|pdb|3B6P|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And Inhibitor Ions (Sodium And Zinc) gi|206581862|pdb|3B6P|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And Inhibitor Ions (Sodium And Zinc) Length = 247 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 33/223 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + D E G + + + V R +E+T + Sbjct: 13 MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLS 70 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100 A P A ITG++ + G + + + F C++ +N R Sbjct: 71 LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 130 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + R S +G D + ++ + + PS + S+ L Sbjct: 131 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 181 Query: 161 QDLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + + ++H A+ DV L++ + + + Sbjct: 182 GSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 224 >gi|262394326|ref|YP_003286180.1| hypothetical protein VEA_003555 [Vibrio sp. Ex25] gi|262337920|gb|ACY51715.1| hypothetical protein VEA_003555 [Vibrio sp. Ex25] Length = 176 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 20/148 (13%) Query: 3 NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E + G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSRGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGITP+K + G E + + + F N + DD + Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIYASW---GRDDLILLEECKQ 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 ++ + N + + + + ++ Sbjct: 114 KGIEAPFTEFINLATLYRIQNRLKDKRI 141 >gi|15029820|gb|AAH11133.1| Three prime repair exonuclease 1 [Mus musculus] Length = 314 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 33/223 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + D E G + + + V R +E+T + Sbjct: 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGLPPPVPRPPRVVDKLS 68 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100 A P A ITG++ + G + + + F C++ +N R Sbjct: 69 LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 128 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + R S +G D + ++ + + PS + S+ L Sbjct: 129 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 179 Query: 161 QDLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + + ++H A+ DV L++ + + + Sbjct: 180 GSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 222 >gi|50843110|ref|YP_056337.1| oligoribonuclease [Propionibacterium acnes KPA171202] gi|81826407|sp|Q6A786|ORN_PROAC RecName: Full=Oligoribonuclease gi|50840712|gb|AAT83379.1| oligoribonuclease [Propionibacterium acnes KPA171202] gi|313763467|gb|EFS34831.1| exonuclease [Propionibacterium acnes HL013PA1] gi|313808072|gb|EFS46553.1| exonuclease [Propionibacterium acnes HL087PA2] gi|313813519|gb|EFS51233.1| exonuclease [Propionibacterium acnes HL025PA1] gi|313816648|gb|EFS54362.1| exonuclease [Propionibacterium acnes HL059PA1] gi|313819642|gb|EFS57356.1| exonuclease [Propionibacterium acnes HL046PA2] gi|313822034|gb|EFS59748.1| exonuclease [Propionibacterium acnes HL036PA1] gi|313823730|gb|EFS61444.1| exonuclease [Propionibacterium acnes HL036PA2] gi|313826052|gb|EFS63766.1| exonuclease [Propionibacterium acnes HL063PA1] gi|313829524|gb|EFS67238.1| exonuclease [Propionibacterium acnes HL063PA2] gi|314914829|gb|EFS78660.1| exonuclease [Propionibacterium acnes HL005PA4] gi|314919419|gb|EFS83250.1| exonuclease [Propionibacterium acnes HL050PA1] gi|314920674|gb|EFS84505.1| exonuclease [Propionibacterium acnes HL050PA3] gi|314924777|gb|EFS88608.1| exonuclease [Propionibacterium acnes HL036PA3] gi|314930554|gb|EFS94385.1| exonuclease [Propionibacterium acnes HL067PA1] gi|314954492|gb|EFS98898.1| exonuclease [Propionibacterium acnes HL027PA1] gi|314957575|gb|EFT01678.1| exonuclease [Propionibacterium acnes HL002PA1] gi|314961982|gb|EFT06083.1| exonuclease [Propionibacterium acnes HL002PA2] gi|314968385|gb|EFT12483.1| exonuclease [Propionibacterium acnes HL037PA1] gi|314978912|gb|EFT23006.1| exonuclease [Propionibacterium acnes HL072PA2] gi|314986647|gb|EFT30739.1| exonuclease [Propionibacterium acnes HL005PA2] gi|314991003|gb|EFT35094.1| exonuclease [Propionibacterium acnes HL005PA3] gi|315083650|gb|EFT55626.1| exonuclease [Propionibacterium acnes HL027PA2] gi|315087019|gb|EFT58995.1| exonuclease [Propionibacterium acnes HL002PA3] gi|315089194|gb|EFT61170.1| exonuclease [Propionibacterium acnes HL072PA1] gi|315099093|gb|EFT71069.1| exonuclease [Propionibacterium acnes HL059PA2] gi|315100423|gb|EFT72399.1| exonuclease [Propionibacterium acnes HL046PA1] gi|315106884|gb|EFT78860.1| exonuclease [Propionibacterium acnes HL030PA1] gi|315109117|gb|EFT81093.1| exonuclease [Propionibacterium acnes HL030PA2] gi|327334124|gb|EGE75838.1| oligoribonuclease [Propionibacterium acnes HL097PA1] gi|327446295|gb|EGE92949.1| exonuclease [Propionibacterium acnes HL013PA2] gi|327454846|gb|EGF01501.1| exonuclease [Propionibacterium acnes HL087PA3] gi|327457869|gb|EGF04524.1| exonuclease [Propionibacterium acnes HL083PA2] gi|328752440|gb|EGF66056.1| exonuclease [Propionibacterium acnes HL020PA1] gi|328755323|gb|EGF68939.1| exonuclease [Propionibacterium acnes HL087PA1] gi|328758196|gb|EGF71812.1| exonuclease [Propionibacterium acnes HL025PA2] gi|332676038|gb|AEE72854.1| oligoribonuclease [Propionibacterium acnes 266] Length = 202 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 19/129 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVFI 60 V D E G D+A D + A + D Q KP +L + Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHT 61 Query: 61 T---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 T G+T +A + I + + N I D + Sbjct: 62 TSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMP 115 Query: 112 RNFYDSYRW 120 + + Sbjct: 116 KLESYVHYR 124 >gi|59624979|ref|NP_035767.4| three prime repair exonuclease 1 [Mus musculus] gi|59624981|ref|NP_001012236.1| three prime repair exonuclease 1 [Mus musculus] gi|47606196|sp|Q91XB0|TREX1_MOUSE RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5' exonuclease TREX1 gi|12751325|gb|AAK07621.1|AF319574_1 3'-5' exonuclease Trex1 [Mus musculus] gi|11092297|gb|AAD48775.2| 3'-5' exonuclease TREX1 [Mus musculus] gi|26352780|dbj|BAC40020.1| unnamed protein product [Mus musculus] gi|26366683|dbj|BAB26571.2| unnamed protein product [Mus musculus] gi|74179024|dbj|BAE42731.1| unnamed protein product [Mus musculus] gi|148689391|gb|EDL21338.1| three prime repair exonuclease 1, isoform CRA_a [Mus musculus] gi|148689392|gb|EDL21339.1| three prime repair exonuclease 1, isoform CRA_a [Mus musculus] Length = 314 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 33/223 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + D E G + + + V R +E+T + Sbjct: 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLS 68 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100 A P A ITG++ + G + + + F C++ +N R Sbjct: 69 LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 128 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + R S +G D + ++ + + PS + S+ L Sbjct: 129 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 179 Query: 161 QDLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + + ++H A+ DV L++ + + + Sbjct: 180 GSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 222 >gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] Length = 309 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLIK--PKEMRFMPINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + ++I +F+ ++ +N FD R+ ++ Sbjct: 57 RPHMVKDE-LEFDKIWQKIKDYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTINNFLGYKF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|332076265|gb|EGI86731.1| exonuclease family protein [Streptococcus pneumoniae GA41301] Length = 196 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---NQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226] gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226] Length = 224 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201 >gi|28898216|ref|NP_797821.1| hypothetical protein VP1442 [Vibrio parahaemolyticus RIMD 2210633] gi|153836508|ref|ZP_01989175.1| exonuclease KapD [Vibrio parahaemolyticus AQ3810] gi|260361750|ref|ZP_05774777.1| exonuclease KapD [Vibrio parahaemolyticus K5030] gi|260878557|ref|ZP_05890912.1| exonuclease KapD [Vibrio parahaemolyticus AN-5034] gi|260898982|ref|ZP_05907423.1| exonuclease KapD [Vibrio parahaemolyticus Peru-466] gi|260902016|ref|ZP_05910411.1| exonuclease KapD [Vibrio parahaemolyticus AQ4037] gi|28806433|dbj|BAC59705.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750106|gb|EDM60851.1| exonuclease KapD [Vibrio parahaemolyticus AQ3810] gi|308087959|gb|EFO37654.1| exonuclease KapD [Vibrio parahaemolyticus Peru-466] gi|308091327|gb|EFO41022.1| exonuclease KapD [Vibrio parahaemolyticus AN-5034] gi|308107728|gb|EFO45268.1| exonuclease KapD [Vibrio parahaemolyticus AQ4037] gi|308113624|gb|EFO51164.1| exonuclease KapD [Vibrio parahaemolyticus K5030] gi|328473772|gb|EGF44607.1| hypothetical protein VP10329_13955 [Vibrio parahaemolyticus 10329] Length = 176 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 20/151 (13%) Query: 3 NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWSENGVGRTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGITP+K + G AE + + + F N + DD + Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLAEVIKSMIKNFGGRNKIYASW---GRDDVILLEECKQ 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143 ++ + N + + + + ++ Sbjct: 114 KGIEAPFTEFINLATLYRIQNRLKDKRIGHR 144 >gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33] gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9] gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1] gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27] gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9] gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33] gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27] gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1] Length = 224 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201 >gi|154340886|ref|XP_001566396.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063719|emb|CAM39904.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 508 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 65/246 (26%), Gaps = 21/246 (8%) Query: 9 DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E G +F V +D + + +P + +TGIT Sbjct: 233 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 291 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + + + + + ++ R YD Sbjct: 292 QEMVDLAD-PLPMVVAQFQDWLRTEVYPLCRMWARHYGPNHLSHNLKSEQRRFVYDELTD 350 Query: 121 SWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + S +L + + F + D I H +H Sbjct: 351 AAKANVSAEAMLCMATDGPWDMRRFMHECSVLRDGVDFPPV-----CYRYINIRHSYSHH 405 Query: 177 AKADVYATLALVWLIREKKPKLFEYLY-DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 K ++ + D RN ++ + + + HVS + A R Sbjct: 406 FKCRQVRLTHMLKQMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHRG 464 Query: 236 NTALIA 241 ++ L++ Sbjct: 465 DSFLVS 470 >gi|312868467|ref|ZP_07728667.1| DNA polymerase III, epsilon subunit [Streptococcus parasanguinis F0405] gi|311096212|gb|EFQ54456.1| DNA polymerase III, epsilon subunit [Streptococcus parasanguinis F0405] Length = 197 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR ++++ + + D + Sbjct: 5 EDYIAFDLE---FNQYEGAYQIIQVSAVRF-TDGKEVDHYDSY---VYTDKPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K +E + F +IGYN + D + D Y Sbjct: 58 TGITQDKIQNAPQLE-QVLSEFKTFVGDRP--LIGYNAQKSDLPILL-ENGLDLEDQYA- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ D PS G + +L +A G+ +HD+ D Sbjct: 113 --------VDVFDEAFERR---------PSDLHGIKNLQLHTVAEFLGVA-GKSHDSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTALVYEQFLEFDQ 170 >gi|167586566|ref|ZP_02378954.1| oligoribonuclease [Burkholderia ubonensis Bu] Length = 206 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + E Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51 >gi|256371657|ref|YP_003109481.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] gi|256008241|gb|ACU53808.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] Length = 188 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 8/114 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYLPDPEAVFITG 62 D E G D + A + D + E + V + + +P V + Sbjct: 2 LAWMDLEMTGLDPERCVILEIAAIVTDDELETVAELGPLVLHATDEELAVMEPVVVQMHS 61 Query: 63 ITP--QKALRDGVVEAEFSRRIHQFFS----VPNTCIIGYNNIRFDDYYSRNIF 110 + R + E + F P+ + N+I D + Sbjct: 62 ANHLLEDVRRASLTIDEAESTVLAFLKAHLPDPHQVPLCGNSIGTDRRFLARHM 115 >gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK] gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK] Length = 223 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 59/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D ST F P + + EA+ G Sbjct: 20 VVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHSFVMEASERARL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 N + D + L G+ N Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGVAFDNKE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTERTAELFCEIVNK 201 >gi|125973027|ref|YP_001036937.1| exonuclease, RNase T and DNA polymerase III [Clostridium thermocellum ATCC 27405] gi|256004824|ref|ZP_05429799.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum DSM 2360] gi|281417237|ref|ZP_06248257.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum JW20] gi|125713252|gb|ABN51744.1| Exonuclease, RNase T and DNA polymerase III [Clostridium thermocellum ATCC 27405] gi|255991274|gb|EEU01381.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum DSM 2360] gi|281408639|gb|EFB38897.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum JW20] gi|316940738|gb|ADU74772.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum DSM 1313] Length = 215 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 25/209 (11%) Query: 4 HFVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++++YD E + + + ++++ ++I F KP Sbjct: 2 NYIVYDLELNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFI-KPKYFKKLFSVVKQK 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T IT ++ F I QF + + D N Sbjct: 61 TKITQEQINSADS----FRNVIKQFIRWIGDDYLLISWGHDDVLNLILNCKFNRI----- 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179 + D L I PS + L++ G+E H A Sbjct: 112 -------KIDWLKRNIDIQKQFSAIYHLPSGQ----RYSLENALALIGVEIDENLHRALT 160 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208 D T + I +K ++K Sbjct: 161 DAQYTAKIFKSIFDKLDLEVYNTVHIKDK 189 >gi|313892759|ref|ZP_07826340.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412] gi|313442690|gb|EFR61101.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412] Length = 327 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 36/220 (16%) Query: 4 HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 +++++D E + Q V+++ + + ++ +F Y Sbjct: 2 NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNDEMDIVDHFTMF---IKPQY 58 Query: 52 LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 LP +TGIT ++ GV + + + + D R Sbjct: 59 LPRMHKHVRELTGITSREL-DHGVPFKTAMQHFQ---NWCGDEYMLLSWGSDDILILREN 114 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + + + ++ + + + ++DL Sbjct: 115 LMLHKMKALSYDQ-------------WVDAQMIYAYQRYGTNQQYSVAHAMEDL--NIST 159 Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209 EH++AH+A D T + + + L + N Sbjct: 160 EHLSAHNALHDAVFTARICQKLDIPQGILHYDQIRKESSN 199 >gi|256824739|ref|YP_003148699.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius DSM 20547] gi|256688132|gb|ACV05934.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius DSM 20547] Length = 223 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 13/128 (10%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYL--PDPEAVF 59 + V D E G + D + A + D + + +P D L +P Sbjct: 27 DRIVWIDCEMTGLEP-TDVLVEIAALVTDFELNVLGEGVQVVIRPDDLGALEGLNPVVQK 85 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 + G+ + ++ GV AE R++ ++ + N+I D + Sbjct: 86 MHTASGLLEE--IQHGVSAAEAERQVLEYVRQWVPVAGKAPLAGNSIATDRRFLAAEMPE 143 Query: 113 NFYDSYRW 120 + Sbjct: 144 LDGYLHYR 151 >gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33] gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33] Length = 227 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 23 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 82 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 83 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 142 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 143 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 183 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 184 AHSALYDTQKTAELFCTIVNQ 204 >gi|66768743|ref|YP_243505.1| hypothetical protein XC_2435 [Xanthomonas campestris pv. campestris str. 8004] gi|66574075|gb|AAY49485.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 185 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 35/202 (17%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYL-PDP 55 M + F+ D ET G + IE+ + + C+ DP Sbjct: 1 MNDKQEVFISVDVETAGPIPGIYSLLSIGA-------CVIENPVQTYACELKPTTTQADP 53 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIF 110 A+ +TG++ ++ R+G+ R + S +G+N FD + F Sbjct: 54 AALEVTGLSLERLAREGLAPEVAMREFRTWVLGVCESKGEPVFVGFNA-AFDWSFINYYF 112 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 +R D G S D+ + W +A + Sbjct: 113 HRYLGD-----NPFGFSALDIKSL-----YMGAVQCAWHDTRS-------SQMAKSLQPH 155 Query: 171 HVNAHDAKADVYATLALVWLIR 192 HDA D L +R Sbjct: 156 LAGNHDAMQDALYQAELFRCVR 177 >gi|163800755|ref|ZP_02194655.1| hypothetical protein 1103602000593_AND4_00793 [Vibrio sp. AND4] gi|159175104|gb|EDP59901.1| hypothetical protein AND4_00793 [Vibrio sp. AND4] Length = 176 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 20/148 (13%) Query: 3 NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNENGVGRTG------EIIEVGLAELDLSKGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGITP+K + G E + + + F N + DD + Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW---GRDDVILLEECQQ 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 D+ + N + + + + ++ Sbjct: 114 KGIDAPFTEFINLATLYRIQNRLKDKRI 141 >gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium avium 104] gi|254774490|ref|ZP_05216006.1| oligoribonuclease [Mycobacterium avium subsp. avium ATCC 25291] gi|166216267|sp|A0QDA8|ORN_MYCA1 RecName: Full=Oligoribonuclease gi|118166175|gb|ABK67072.1| oligoribonuclease [Mycobacterium avium 104] Length = 215 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 42/155 (27%), Gaps = 20/155 (12%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + V D E G D+ D+ + A + D + + ADD + Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIH-ADDAALAAMGEVV 59 Query: 61 TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 T + R G++ E I P T + N+I D + Sbjct: 60 T----EMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIV 115 Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 DSY S L + Sbjct: 116 R--DMPALDSYLHYRMIDVSSIKELCRRWYPRIYF 148 >gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] Length = 303 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60 FV D+ET + V D + + +S +P + +P V++ Sbjct: 1 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 GIT + ++ + ++ F I +N+ FD Sbjct: 58 HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFD 95 >gi|288940627|ref|YP_003442867.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] gi|288895999|gb|ADC61835.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] Length = 187 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%) Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 M+ + + D E G D DR + A + D Q + Sbjct: 6 MSKSEHNLIWIDLEMTGLDPDHDRILEIATLITDSQLRVLAE 47 >gi|87121900|ref|ZP_01077785.1| oligoribonuclease [Marinomonas sp. MED121] gi|86162698|gb|EAQ63978.1| oligoribonuclease [Marinomonas sp. MED121] Length = 183 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 6/38 (15%), Positives = 13/38 (34%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D + + A + D+ + Sbjct: 5 KENLIWIDLEMTGLDPEKNTIIEIATIVTDKHLNVLSE 42 >gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] Length = 305 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60 FV D+ET + V D + + +S +P + +P V++ Sbjct: 3 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 59 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 GIT + ++ + ++ F I +N+ FD Sbjct: 60 HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFD 97 >gi|146300607|ref|YP_001195198.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146155025|gb|ABQ05879.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 198 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 27/182 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + FV+ ET G + D +D E+ E L + + Sbjct: 27 PSKFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFEA--------VLLQYKFLED 78 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 G++ + + + + + + F + ++ ++I FD R + Sbjct: 79 NGLSNEFIIESKMTKMPEAEALEAFINFLGNAVLVGHHINFDIEMLNAALERLDCGRLKN 138 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 A D + D F L DL I + + + D Sbjct: 139 E------------------ALDIDVMYRKLTDINDKQFSLNDLCEIYKIPKSDRNSSAED 180 Query: 181 VY 182 Y Sbjct: 181 AY 182 >gi|76787294|ref|YP_330370.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae A909] gi|77406198|ref|ZP_00783268.1| exonuclease [Streptococcus agalactiae H36B] gi|77411632|ref|ZP_00787973.1| exonuclease [Streptococcus agalactiae CJB111] gi|76562351|gb|ABA44935.1| exonuclease, putative [Streptococcus agalactiae A909] gi|77162349|gb|EAO73319.1| exonuclease [Streptococcus agalactiae CJB111] gi|77175192|gb|EAO77991.1| exonuclease [Streptococcus agalactiae H36B] Length = 195 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 32/198 (16%) Query: 5 FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E T G Q + V+ ++I + + +TG Sbjct: 7 YIAFDLEFNTVG---EHSHIIQVSSVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + + +E F +T +IGYN + D N D Sbjct: 60 ITARDIIGAPKIET-VLTDFQSFV--GDTPLIGYNGHKSDLPLLVE----NGLDLTSQYQ 112 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 DL D + +GI + KL +A GI+ AH++ D Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156 Query: 183 ATLALVWLIREKKPKLFE 200 T + + Sbjct: 157 MTARVYEKFLDLDENKIY 174 >gi|322376854|ref|ZP_08051347.1| exonuclease [Streptococcus sp. M334] gi|321282661|gb|EFX59668.1| exonuclease [Streptococcus sp. M334] Length = 196 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R ++I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + + +F + ++GYN + D + Sbjct: 58 TGITAETLKDAPPVE-KVIKDFQEFV--GSLPMVGYNAAKSDLPILADHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|300859054|ref|YP_003784037.1| hypothetical protein cpfrc_01637 [Corynebacterium pseudotuberculosis FRC41] gi|300686508|gb|ADK29430.1| hypothetical protein cpfrc_01637 [Corynebacterium pseudotuberculosis FRC41] gi|302206756|gb|ADL11098.1| Oligoribonuclease [Corynebacterium pseudotuberculosis C231] gi|302331309|gb|ADL21503.1| Oligoribonuclease [Corynebacterium pseudotuberculosis 1002] gi|308277000|gb|ADO26899.1| Oligoribonuclease [Corynebacterium pseudotuberculosis I19] Length = 219 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 10/119 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A + D + D L D + Sbjct: 19 DRLVWIDLEMTGLDTHRHVIVEVAALITDADLNILGEGVDLVVHATDAQLAEMDDYVTAM 78 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112 G+T Q+ V E + + + + + N+I D + R Sbjct: 79 HENSGLT-QEIRSSTVSIEEAEDAVLELIAKHCDPQHPAPLAGNSIATDRSFINAYMPR 136 >gi|307705111|ref|ZP_07641989.1| DNA polymerase III, epsilon chain [Streptococcus mitis SK597] gi|307621335|gb|EFO00394.1| DNA polymerase III, epsilon chain [Streptococcus mitis SK597] Length = 196 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R ++I++ + + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTNVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + + +F ++GYN ++ D Sbjct: 58 TGITAETLKDAPPVE-KVIKDFQEFVGSLP--MVGYNAVKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1] gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter sp. ADP1] Length = 221 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 31/205 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + ++ + P + D ++ G Sbjct: 25 VVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRSLDFIG 84 Query: 63 ITP------QKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + IH+ ++ +N FD + + R Sbjct: 85 IDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIART- 143 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + + D + + L + GI+ Sbjct: 144 ----STKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LAKACIQAGIDFDGK 186 Query: 173 NAHDAKADVYATLALVWLIREKKPK 197 AH A D T L I K Sbjct: 187 EAHSALYDTQKTAELFCYILNKLSP 211 >gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34] gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34] Length = 221 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 58/201 (28%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D +T F P + + EA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ S + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 N + D + L I N Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACQTANIPFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTERTAELFCEIVNK 201 >gi|326331153|ref|ZP_08197449.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1] gi|325951048|gb|EGD43092.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 19/118 (16%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---- 56 + V D E G + D + A + D + KP + L + Sbjct: 8 LNERLVWIDCEMTGLSLENDALIEVAALVTDFDLNVLGDGVDIIIKPPAEALEQMDDFVR 67 Query: 57 ------AVFI---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + + G+T ++A E + + + + +G N + D + Sbjct: 68 DMHTKSGLLVELENGVTMREA------EEQVLAYVWEHCGKDSRPPLGGNTVATDRNF 119 >gi|300782107|ref|YP_003762398.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299791621|gb|ADJ41996.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] Length = 461 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 9/105 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D T G R + A VRV P + GIT Sbjct: 20 FTVVDIRTTGL--RSGRVVELAAVRVSADGSFGGELTTL---VDPGPGVPPGPALVHGIT 74 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 + E F + ++ +++ + Sbjct: 75 RGELDGAP-SFGEVLG---PFLDLCAGSVLVAHDLASAGAFLDRE 115 >gi|281343118|gb|EFB18702.1| hypothetical protein PANDA_015684 [Ailuropoda melanoleuca] Length = 334 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 29/208 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDR---------------QWEKIESTEVFFCK 46 + D E G + + + + V R + Sbjct: 31 MQTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPEGQPPTVPPPPRVVDKLSLC 90 Query: 47 PADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 A PEA ITG++ G +A+ + + F C++ +N R+D Sbjct: 91 VAPGKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLQRQPQPWCLVAHNGNRYD 150 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + S + D + ++ + + PS S+ L Sbjct: 151 FPLLQAELAVLGL----ASVLDSAFCVDSIAALK-----ALEHADSPSEHGPRKSYSLGS 201 Query: 163 L-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A++DV A L++ Sbjct: 202 IYTRLYGQAPPDSHMAESDVLALLSICQ 229 >gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str. 657] gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Ba4 str. 657] Length = 309 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + + +E KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGKIVEKVHYLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD R+ ++ Sbjct: 57 RPHMVKDE-LEFDKIWEKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSSIDN----------ARLNTVNNFLGYKF-QHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4] Length = 224 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGVEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201 >gi|225438656|ref|XP_002277040.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera] Length = 303 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 31/193 (16%) Query: 5 FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV--- 58 V +D ET + A R +F + V R+ ++ES L A+ Sbjct: 15 IVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTL---IRPGDL-SAVALRSG 70 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GIT + E E + +I + G+N RFD + + + Sbjct: 71 RSDGITREVVAGAPGFE-EVADQIFSILN--GRVWAGHNIQRFD-----CVRIKEAFAEI 122 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D L V+ A + K+ LA G+ H + Sbjct: 123 GRAAPVPVGMIDSLGVL------------TEKFGRRAGNMKMATLATYFGLGQQK-HRSL 169 Query: 179 ADVYATLALVWLI 191 DV L ++ Sbjct: 170 DDVRMNLEVLKHC 182 >gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera] Length = 293 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 31/193 (16%) Query: 5 FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV--- 58 V +D ET + A R +F + V R+ ++ES L A+ Sbjct: 48 IVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTL---IRPGDL-SAVALRSG 103 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 GIT + E E + +I + G+N RFD + + + Sbjct: 104 RSDGITREVVAGAPGFE-EVADQIFSILN--GRVWAGHNIQRFD-----CVRIKEAFAEI 155 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + D L V+ A + K+ LA G+ H + Sbjct: 156 GRAAPVPVGMIDSLGVL------------TEKFGRRAGNMKMATLATYFGLGQQK-HRSL 202 Query: 179 ADVYATLALVWLI 191 DV L ++ Sbjct: 203 DDVRMNLEVLKHC 215 >gi|301781328|ref|XP_002926073.1| PREDICTED: three prime repair exonuclease 1-like [Ailuropoda melanoleuca] Length = 338 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 65/208 (31%), Gaps = 29/208 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDR---------QWE------KIESTEVFFCK 46 + D E G + + + + V R + + + Sbjct: 35 MQTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPEGQPPTVPPPPRVVDKLSLC 94 Query: 47 PADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102 A PEA ITG++ G +A+ + + F C++ +N R+D Sbjct: 95 VAPGKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLQRQPQPWCLVAHNGNRYD 154 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + S + D + ++ + + PS S+ L Sbjct: 155 FPLLQAELAVLGL----ASVLDSAFCVDSIAALK-----ALEHADSPSEHGPRKSYSLGS 205 Query: 163 L-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A++DV A L++ Sbjct: 206 IYTRLYGQAPPDSHMAESDVLALLSICQ 233 >gi|302758050|ref|XP_002962448.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii] gi|300169309|gb|EFJ35911.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii] Length = 236 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G DV DR + A + D + I ++ + Sbjct: 60 LVWIDLEMTGLDVCKDRILEIACIITDGKLTKSIEGPNLVIHQSDEILKGMGEWCQTHHA 119 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108 A +T ++ V EA + +F + N++ D + R Sbjct: 120 ASGLT----ERVQNSKVTEAHAEMLVLKFVQKYTIAGYAQLAGNSVYNDLNFLRK 170 >gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA] gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA] Length = 209 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 21/178 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60 + +D ET Q + + +D + I F D A I Sbjct: 2 KLLFFDTETTSIKPGN--ICQLSYIVIDASVKPQKTIGKNFFFTV-----DSMDEGAEAI 54 Query: 61 TGITPQKALRDGVVE-AEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 G + +K + E EF +H+F + I +N++FD + ++ + + Sbjct: 55 HGFSLEKLYD--LSEGKEFLDCVHEFMPDFFDADFIIGHNVQFDIKFLKHELQQLWEAGL 112 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + + + A+ PS + KL ++ I + Sbjct: 113 IDTTWEPKNTFCTM-------AYYKSPCNLPSPSGNIKNPKLAEVIDFLQISEDQITN 163 >gi|302189797|ref|ZP_07266470.1| oligoribonuclease [Pseudomonas syringae pv. syringae 642] Length = 178 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPALE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|221213533|ref|ZP_03586507.1| oligoribonuclease [Burkholderia multivorans CGD1] gi|221166322|gb|EED98794.1| oligoribonuclease [Burkholderia multivorans CGD1] Length = 211 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + E Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51 >gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155] gi|118174521|gb|ABK75417.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 52/202 (25%), Gaps = 36/202 (17%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60 + V D E G D+ DR + A + D + D+ L + Sbjct: 10 DELVWIDCEMTGLDLKSDRLIEIAVLVTDADLNILGDGLDVVIHADDESLSSMVDVVKQM 69 Query: 61 T---GITPQKALRDGV----VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 G+T ++ R V E I T + N+I D + + Sbjct: 70 HARSGLT-EEVRRSTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMPK- 127 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D Y S L + E Sbjct: 128 -LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------QPEKGL 162 Query: 174 AHDAKADVYATLALVWLIREKK 195 AH A AD++ ++ + R Sbjct: 163 AHRALADIHESIRELKYYRATA 184 >gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri DSM 20016] gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112] gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3] gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A] gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM4-1A] gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri DSM 20016] gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112] gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3] gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A] gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM4-1A] Length = 179 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 30/198 (15%) Query: 2 TNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +F+ D+ET G+ + + + R + + I Sbjct: 1 MMNFIAMDFETANGKRYSACSL----ALTIVRNGQIADEFYTL---INPHTKFFWRNTQI 53 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + E I+QF++ P+ +I +NN N RN + Y Sbjct: 54 HGIHERDVQNAP-DFPEVWEHINQFYT-PDKLVIAHNNRFD------NSVLRNTLEHYNI 105 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + LD + + G T++KL + A I+ + H+A D Sbjct: 106 E----VPAYQTLDTVASSRQL----------IPGLTNYKLNTVCDALNIDLHHHHNALDD 151 Query: 181 VYATLALVWLIREKKPKL 198 A ++ + Sbjct: 152 AQACANILLYQSKHFTPQ 169 >gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27] gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27] Length = 209 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + A + V + + + D E + I Sbjct: 1 MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ L + + I++ + I+ +N +FD R D Y+ Sbjct: 56 GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D ++ A PD + KL +A G+E H A D Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152 Query: 182 YATLAL 187 + Sbjct: 153 ETCAKV 158 >gi|56460284|ref|YP_155565.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR] gi|56179294|gb|AAV82016.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR] Length = 215 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 52/186 (27%), Gaps = 21/186 (11%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFITG 62 +V D E+ G D + A + + + VF + P I G Sbjct: 27 YVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVFAHGQELELGQSPT---IHG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q L + F+ N ++ ++ D + ++I + Sbjct: 84 LTRQDFLHSSEPKQTFAM----LSRALNDAVLVCHHKGMDWRFLKHIEAQYGIP------ 133 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + L + + + P + L + +AH A D Sbjct: 134 ------FKPLAIFDTLAFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYHAHHALTDTV 187 Query: 183 ATLALV 188 A L Sbjct: 188 ACAELF 193 >gi|307191510|gb|EFN75025.1| Three prime repair exonuclease 2 [Camponotus floridanus] Length = 324 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 11/121 (9%) Query: 3 NHFVIYDYETFGR--DVALDRPAQFAGVRV------DRQWEKIESTEVFFCKP-ADDYLP 53 F+ +D ET G + + R + A + V + + P + Sbjct: 4 QTFIFFDLETTGLIQEKLMPRITEIALIAVGRESICNSNKASLPRVLQKLILPINPQKII 63 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFY 111 P +IT + + L E E I +F P C +N F Sbjct: 64 PPNVEYITKLFNDEMLLLQSFECEVYELIMRFLQRLTPPICFAAHNGKSFYYPIFFQELE 123 Query: 112 R 112 R Sbjct: 124 R 124 >gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385] gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385] Length = 249 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220 >gi|302923273|ref|XP_003053640.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734581|gb|EEU47927.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 216 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 11/128 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-ADDYLPDPEAVF 59 + V D E G D D + + E ++ P + D Sbjct: 18 DPLVWIDCEMTGLDQDNDEILEIYCIITTGNLEILDEEGFHAIIHWPQSRLDQMDDWCTK 77 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQ----FFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G+T E E + ++ F ++ N++ D + R YR Sbjct: 78 THADSGLTAAVLASTTTPE-EAASALYDYVTRFIPDRRRGLLAGNSVHCDRAFLRREPYR 136 Query: 113 NFYDSYRW 120 Sbjct: 137 KVMKHLHH 144 >gi|190015910|ref|YP_001965118.1| putative exonuclease [Rhodococcus sp. NS1] gi|114796750|gb|ABI79343.1| putative exonuclease [Rhodococcus sp. NS1] Length = 238 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 14/112 (12%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 I D ET G D + A + D E + +T V C P +P AV + G+T Sbjct: 53 IVDVETSGLD---GSIIEIAVI--DAATGEVLLNTLV-DCSP---VEIEPGAVEVHGLTA 103 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +E + N ++ YN + R D Sbjct: 104 TDLAGAPR-WSEVFPELAAATK--NRVVLAYNAKFDRGRVLHD-CRREGIDP 151 >gi|330876090|gb|EGH10239.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964631|gb|EGH64891.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 180 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 23/192 (11%) Query: 2 TNHFVIYDYE-TF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E T G VA + V++ +++ E F +PA L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T I Q + + ++ S ++G+ + Sbjct: 60 KELTHI-NQSNIDSAAPLTTVWPQFERWLSHHRARVVGW----------------ASWGD 102 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176 Y R L + ++ L G++ H Sbjct: 103 YDRQQLEEEWRHHQLGSALSSMPHVNLKQRFAQARQLQKPVGLNSALQLAGMQFSGQQHR 162 Query: 177 AKADVYATLALV 188 A D T L+ Sbjct: 163 ALVDARNTARLL 174 >gi|321463015|gb|EFX74034.1| hypothetical protein DAPPUDRAFT_16784 [Daphnia pulex] Length = 141 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 10/123 (8%) Query: 4 HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIEST-------EVFFCKPADDYLPDP 55 V +D ET G + + + V+R L DP Sbjct: 1 SLVFFDLETTGLPAFHCPKITELSFCAVERHQFLNGQPKAMPRVTNRLNLCIYPSRLVDP 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRN 113 EA T + + + I+ F + C+I +N FD R+ + Sbjct: 61 EATNKTKLDNYNLEHQSRFDEDVFNLIYSFLNRLKKPICLIAHNGYNFDFPILRSEIAKL 120 Query: 114 FYD 116 + Sbjct: 121 GKE 123 >gi|326527927|dbj|BAJ89015.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 259 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G D+ DR + A + D + I ++ + Sbjct: 71 LVWIDLEMTGLDIRKDRILEIACIITDGKLTKRIEGPDLVIRQSKECLDNMNEWCKTHHG 130 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP 89 A +T ++ + + E + ++ H + Sbjct: 131 ASGLT----EQVQQSDISECDAEKQTHCYLQTC 159 >gi|295108760|emb|CBL22713.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Ruminococcus obeum A2-162] Length = 319 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 70/274 (25%), Gaps = 33/274 (12%) Query: 4 HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G+ + R + V+++ Q E ++ + KP Sbjct: 2 NYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVLDVFQ-RLVKPQVYNWIHD 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + + GV + + +F + D + Sbjct: 61 SIHEVIHVDYKDLAD-GVPFPQA---VEEFLDWCGEERVFCTWGNQDVMELQRNMKYYGL 116 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + +D + Y P D K H Sbjct: 117 ---LKKIKGPVTYYDAQKIYGICYKEDPCRRSLEYAIDKMRLPK-----------AQEFH 162 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF----- 230 A D T + + + + Y+N ++ I + +VS F Sbjct: 163 RALTDAKYTGEIFKRLDMQVVLANPSIDVYQNPKTRKEEIYLSYPNYDEYVSREFAEKEK 222 Query: 231 -GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263 R + PV P + N S Sbjct: 223 VIKDREVASTRCPVCHLPAKRKIRWFMNNSRAYE 256 >gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella parvula ATCC 17745] gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella parvula ATCC 17745] Length = 209 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + A + V + + + D E + I Sbjct: 1 MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ L + + I++ + I+ +N +FD R D Y+ Sbjct: 56 GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D ++ A PD + KL +A G+E H A D Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152 Query: 182 YATLAL 187 + Sbjct: 153 ETCAKV 158 >gi|171057672|ref|YP_001790021.1| oligoribonuclease [Leptothrix cholodnii SP-6] gi|170775117|gb|ACB33256.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii SP-6] Length = 187 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 7/124 (5%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61 + + D E G D DR + A V D Q V +D+ L +A Sbjct: 13 NLIWIDMEMTGLDPMTDRVIEIAVVVTDAQLTVRVEGPVIAVHQSDEVLDRMDAWNRGTH 72 Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 G + ++ + E + ++ +F T + N+I D + N R Sbjct: 73 GKSGLTERVKASTIGEDQAQDQMIEFLKQYVSKKTSPMCGNSICQDRRFMANYMPRLEEF 132 Query: 117 SYRW 120 + Sbjct: 133 FHYR 136 >gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14] gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14] Length = 221 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 58/201 (28%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D +T F P + + EA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ S + I+ +N FD + R Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 N + D + L I N Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACQTANIPFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 181 AHSALYDTERTAELFCEIVNK 201 >gi|307822745|ref|ZP_07652976.1| Exonuclease RNase T and DNA polymerase III [Methylobacter tundripaludum SV96] gi|307736349|gb|EFO07195.1| Exonuclease RNase T and DNA polymerase III [Methylobacter tundripaludum SV96] Length = 181 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 +H + D E G D D + A + D+ + V +D L D Sbjct: 5 PSHLIWIDLEMTGLDPDNDLIIEIATIITDKDLNILAQGPVLAVHQSDAALGAMDEWNQH 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + + + E R+ +F NT I N+I D + + Sbjct: 65 HHGQSGLIARVKASTIDAEEAERQTIEFLKQWVPENTSPICGNSIGQDRRFLYRYMPKLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AYFHYR 130 >gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sibiricum 255-15] gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sibiricum 255-15] Length = 190 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 51/205 (24%), Gaps = 28/205 (13%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M + + D+ET + F + + D + + Sbjct: 1 MPPYTLAIDFET--ANRNSRSICAFGWSVLSEGRVVTSEQ----VLINPEEDFDAGNIRV 54 Query: 61 TGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 GI P + EA + + + ++ +N FD + + Sbjct: 55 HGIRPSDVWDAPALPEAMEAHGLFKLIEKAE--LVIAHNAAFDMGALQKAVQKYDLYQMP 112 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 ++ P + KL +A + HDAK Sbjct: 113 TFQYG--------CTVKLSRKLYPWL----------PNHKLNTMAEFLNVSF-KHHDAKE 153 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D Y L+ + ++ Sbjct: 154 DAYICALLLQDMFDRTNIEHPVELH 178 >gi|330939856|gb|EGH43089.1| oligoribonuclease [Pseudomonas syringae pv. pisi str. 1704B] gi|330978958|gb|EGH78017.1| oligoribonuclease [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 178 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 209 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 21/151 (13%) Query: 49 DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 D D A+ + GIT + + AE + +F I +N FD + N Sbjct: 2 PDRESDEGAIGVHGITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINN 57 Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168 + R S D L + R + + L L G Sbjct: 58 E-FALMGSQDRADITQHCSVLDTLMMARERHPGQRN--------------SLDALCKRYG 102 Query: 169 IEHV--NAHDAKADVYATLALVWLIREKKPK 197 +++ H A D + + + Sbjct: 103 VDNSGRELHGALLDSEILADVYLAMTGGQTS 133 >gi|255745763|ref|ZP_05419711.1| hypothetical protein VCH_002127 [Vibrio cholera CIRS 101] gi|262158958|ref|ZP_06030070.1| hypothetical protein VIG_002197 [Vibrio cholerae INDRE 91/1] gi|262169319|ref|ZP_06037011.1| hypothetical protein VIJ_002539 [Vibrio cholerae RC27] gi|262192375|ref|ZP_06050528.1| hypothetical protein VIH_002769 [Vibrio cholerae CT 5369-93] gi|255736838|gb|EET92235.1| hypothetical protein VCH_002127 [Vibrio cholera CIRS 101] gi|262022132|gb|EEY40841.1| hypothetical protein VIJ_002539 [Vibrio cholerae RC27] gi|262029143|gb|EEY47795.1| hypothetical protein VIG_002197 [Vibrio cholerae INDRE 91/1] gi|262031728|gb|EEY50313.1| hypothetical protein VIH_002769 [Vibrio cholerae CT 5369-93] Length = 156 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%) Query: 12 TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71 T G + +D +I +F KP D + +TGITP+K + Sbjct: 3 TTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEI-SLFCAELTGITPRKIEKQ 55 Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 G AE + + + F N + DD N + N + + + Sbjct: 56 GRPLAEVIQSMVKNFGGSNKIYASW---GRDDLILLNECREKGLSVPFQEFLNLATLYRI 112 Query: 132 LDVMRAIYA 140 ++ Sbjct: 113 QHRLKDKRI 121 >gi|85711864|ref|ZP_01042919.1| oligoribonuclease [Idiomarina baltica OS145] gi|85694261|gb|EAQ32204.1| oligoribonuclease [Idiomarina baltica OS145] Length = 183 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDY-LPDPEAVF 59 + + D E G + D + A + D + + +P + D V Sbjct: 7 SQRLIWIDLEMTGLNPEYDHVIEVATIVTDADLNILAEGPTIAIHQPQSNLDKMDDWNVK 66 Query: 60 IT---GITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113 G+ + + E + R +F S PNT + N+I D + Sbjct: 67 THTGSGL-VDRVKKSQYSEQDAVRETIEFLSHYVEPNTSPMCGNSICQDRRFLAQHMPEL 125 Query: 114 FYDSYRW 120 + Sbjct: 126 EAFFHYR 132 >gi|327440671|dbj|BAK17036.1| DNA polymerase III, epsilon subunit [Solibacillus silvestris StLB046] Length = 353 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 56/210 (26%), Gaps = 31/210 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 T ++ D E + V+ T +P + +T Sbjct: 4 TKTYISIDIEAA-LIRGKQYIIEIGAVKWLPDGTT--ETFTQLIQPYKFKKLNAHIQKLT 60 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT ++ + F +F + FD RN+ + Sbjct: 61 GITTEQLVDAPS----FKEAFTKFKRWCKQDYVFLTFGEFDRKVLEEELSRNYIKN---- 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 +Y ++ + L L G+E+ H A AD Sbjct: 113 --------------DCLYPMIDFQQKYMIANGLKEQPSLGGLMAQLGLENETQHRALADA 158 Query: 182 YATLALV------WLIREKKPKLFEYLYDY 205 + L++ +I +++ F L Sbjct: 159 ASLLSIFVKVDGDKIIEQQQTNDFILLLTN 188 >gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum H04402 065] Length = 309 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLIK--PKEMRFMPINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD ++ ++ Sbjct: 57 RPHMVKDE-LEFDKIWGKIKDYFNNN---LVIAHNASFDMSVLKSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|152941094|gb|ABS44984.1| histone mRNA 3' end-specific exonuclease [Bos taurus] Length = 349 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + + + +++ + + + + + + R Sbjct: 190 TGITQDQVDKAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298 >gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) [Candidatus Kuenenia stuttgartiensis] Length = 204 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 30/217 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + ++ + I + +P + DP + +I GI+ Sbjct: 4 VAIDFET--ANAKRSSVCSLGLAIIEE--QTIVKRTSWLIRP-PELYFDPFSTYIHGISA 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + I F + +N FD Sbjct: 59 KDVEDKPE-FYQLWDEIFPFLE---GSYLVAHNASFDMSVLCC----------------- 97 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D+ + + G + L ++ IE HDA+ D A Sbjct: 98 --ILDVYKIPYPPLNYFCTLAIAKRVWPGLLGYALNKISRYLEIEF-KHHDAEEDAVACA 154 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222 ++ + + K K + N TP Sbjct: 155 KILLHAYNELGVNNLEELAKKIKLP-EKYLLPDNFTP 190 >gi|254471445|ref|ZP_05084847.1| exonuclease [Pseudovibrio sp. JE062] gi|211959591|gb|EEA94789.1| exonuclease [Pseudovibrio sp. JE062] Length = 248 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 32/217 (14%) Query: 2 TNHFVIYDYE--TF-GRDVAL-------DRPA-QFAGVRV--DRQWEKIESTEVFFCKPA 48 V++D E T G D Q V++ + +E I++ +V Sbjct: 37 MKTAVVFDCEFLTSEGAQRRFWCGPFDPDPVIAQIGAVKLSLEGSFELIDTIKVHINPVD 96 Query: 49 DD---YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 Y DP +TGIT + +G+ E + +++ F + + ++ + + Sbjct: 97 RYGDSYKLDPFFSKLTGITQEMIDSEGISLQEVNEQLNAF---ADGATL-WSWGKDELNM 152 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 Y ++D + + I+ +D A F+L+ Sbjct: 153 MAISCYIAGIQP-----SIPAHQFDNACKLMLAAGMPYEDIKRTRSNDLADYFELEH--- 204 Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + HDA D + ++ + K Sbjct: 205 ----PPLRGHDALDDALSVAYVIQHLLRNKRLSPAEF 237 >gi|220929605|ref|YP_002506514.1| exonuclease RNase T and DNA polymerase III [Clostridium cellulolyticum H10] gi|219999933|gb|ACL76534.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulolyticum H10] Length = 186 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 49/194 (25%), Gaps = 18/194 (9%) Query: 5 FVIYDYETFGRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + D+E D + V + ++I KP + L Sbjct: 2 LIFVDFEATCWDKNEKYKQPHAEIIEIGAVATGKDLKEIGKFSA-VVKPTIEPLLSDYCK 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TG++ G+ +Q+ D + + Sbjct: 61 ELTGLSQTDVEN-GIEFNRAIDLFYQWIIQ---------YQDTDTPILYTWGNYDGFLLK 110 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDA 177 R + N D L +++ + +S L G ++ H + Sbjct: 111 RNLRRHRNKNKDFLKIIQKGGVANLQEKFLEFTKLPCSSCSLTKALQIIGEDYRGIKHRS 170 Query: 178 KADVYATLALVWLI 191 D + L + Sbjct: 171 INDAANMIKLYKYL 184 >gi|88797304|ref|ZP_01112894.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297] gi|88780173|gb|EAR11358.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297] Length = 192 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 50/200 (25%), Gaps = 34/200 (17%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------- 58 ++ D E G + D V +++ ++ A P A+ Sbjct: 18 LVLDLEMTGLNAQEDSIISAGWVVIEQGRIEL--------SLAGHQYFQPTAMMASDVSA 69 Query: 59 --FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I IT + G + +R++ +++ D + + R Sbjct: 70 SAHIHMITDHLLEQQGQPLGHWLQRLNGDLL---ADRWVFHHAPIDMAFLKMFSQRLDI- 125 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + D + D + L + + H Sbjct: 126 --------VLPSVTIEDTVLLEQKRFSDL-----TLESQQQLSLTACRARHRLPAYRQHH 172 Query: 177 AKADVYATLALVWLIREKKP 196 A +D AT L + Sbjct: 173 ALSDALATAELYLALMTDSQ 192 >gi|84494356|ref|ZP_00993475.1| oligoribonuclease [Janibacter sp. HTCC2649] gi|84383849|gb|EAP99729.1| oligoribonuclease [Janibacter sp. HTCC2649] Length = 226 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 19/117 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----- 56 T+ V D E G + D + A + D + + KP D+ L Sbjct: 13 TDRIVWIDCEMTGLSLENDALVEVAALVTDFELNILGDGVDVVIKPTDEALEQMGDFVRE 72 Query: 57 ----AVFIT----GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + I G+T ++A + + ++ P +G N + D + Sbjct: 73 MHTSSGLINEFADGVTIEEAQQR------VLDYVREWVPEPRKAPLGGNTVATDRGF 123 >gi|322829251|gb|EFZ32718.1| hypothetical protein TCSYLVIO_929 [Trypanosoma cruzi] Length = 380 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 15/185 (8%) Query: 8 YDYE-----TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +D E FG D + +F ++ P + E +T Sbjct: 79 FDLEFSGPPVFGPDGPTEDIIEFGFY-----SPAKDTVFSCLVNPTNGRRVSQEVTALTN 133 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDS-YRW 120 IT + ++G+ E ++ + P + G N + + + Sbjct: 134 ITQEMLEKEGLPFPEAWEKVMETLMTPEPQELPGAENRLLVLSHGGKLADVSLIKWTLEA 193 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179 D I P + S+ L DL + AH A Sbjct: 194 HGLELPPALVFGDTFHFIRDAHRRRPVTPDKHP--PSWALADLVQWLKIPPTLPAHRAGN 251 Query: 180 DVYAT 184 D T Sbjct: 252 DAKMT 256 >gi|221102082|ref|XP_002161173.1| PREDICTED: similar to Oligoribonuclease, mitochondrial [Hydra magnipapillata] Length = 184 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 21/118 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPA-------DDYLPDP- 55 V D E G DV D + A + D I ++ +P D Sbjct: 9 LVWVDLEMTGLDVDKDHIIEMAVLITDSDLNIIAEGPDIIINQPESILQNMGDWCKVQHG 68 Query: 56 -----EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 +AV ++ +T ++ E E + ++ + C++ N + D + + Sbjct: 69 KSGLTKAVQVSRVTLKEC------EREMICFVSKYTNK-EKCLLAGNTVHVDKEFLKK 119 >gi|313893912|ref|ZP_07827478.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441476|gb|EFR59902.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 209 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + A + V + + + D E + I Sbjct: 1 MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ L + + I++ + I+ +N +FD R D Y+ Sbjct: 56 GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D ++ A PD + KL +A G+E H A D Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYMGVEF-KHHYALDDA 152 Query: 182 YATLAL 187 + Sbjct: 153 ETCAKI 158 >gi|70731551|ref|YP_261292.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68345850|gb|AAY93456.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 179 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 7/145 (4%) Query: 2 TNHFVIYDYETF---GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G + + V+RQ + + + F +P + P Sbjct: 1 MPHWLVIDLEATTDEGGWPVSEMEIIEIGATLVNRQGREQDHFQ-RFVRPLRRPMLTPFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116 +T IT +E ++ + G+ + +D + ++ Sbjct: 60 RELTHITQANIDSA-APLSEVWGLFERWLGQHQPRLEGWASWGDYDRKQLQLEWHNQQLH 118 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAF 141 S + N + R Sbjct: 119 SLLNEVPHMNLKQRFAKARRLERPL 143 >gi|302815434|ref|XP_002989398.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii] gi|300142792|gb|EFJ09489.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii] Length = 236 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G DV DR + A + D + I ++ + Sbjct: 60 LVWIDLEMTGLDVCKDRILEIACIITDGKLTKSIEGPNLVIHQSDEILKGMGEWCQTHHA 119 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108 A +T ++ V EA + +F + N++ D + R Sbjct: 120 ASGLT----ERVQNSKVTEAHAEMLVLKFVQKYTIAGYAQLAGNSVYNDLNFLRK 170 >gi|330873800|gb|EGH07949.1| oligoribonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 178 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMSALE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 196 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 30/183 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + ++ ++ E +P D + I Sbjct: 1 MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E H+ S + +N FD +R D YR S Sbjct: 55 GIRPEHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQS 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + + WP S +L +A G+ V+ H+A D Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRFVH-HNAAEDA 150 Query: 182 YAT 184 Sbjct: 151 VVC 153 >gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP] gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP] Length = 214 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 9/116 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D + A + ++D+Q + + F +P ++ + +++ G Sbjct: 21 VIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPFENANINADSLKFNG 80 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR 112 I A+ + + E + + + +I +N FD + + R Sbjct: 81 IDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAFLQAAVKR 136 >gi|264677043|ref|YP_003276949.1| exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni CNB-2] gi|262207555|gb|ACY31653.1| Exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni CNB-2] Length = 174 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 7/122 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--ITGI 63 V D E G + DR + A V + VF +D+ L +A G Sbjct: 2 VWLDCEMTGLNPDRDRIIEIAVVVSSSDLQIRVEGPVFAIHQSDELLGGMDAWNKGTHGK 61 Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + K + EAE + F + N+I D + + + Sbjct: 62 SGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFMERYMPKLNNFFH 121 Query: 119 RW 120 Sbjct: 122 YR 123 >gi|255534927|ref|YP_003095298.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium 3519-10] gi|255341123|gb|ACU07236.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium 3519-10] Length = 185 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 58/211 (27%), Gaps = 28/211 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + + + V + + T+ + KP + P + + Sbjct: 1 MIDFCAIDFET--ATHERNSACEMG-ICVVEDGQIV-KTQTWLIKPPNYPYFHPRNIDVH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP+ E ++ +N FD R+ Y Sbjct: 57 GITPRDVQDSP-TFDEIWHEAENLMY---GNLMVAHNAGFDAGVLRSCL------DYYGF 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + + + + + + + L+ LA + I H A D Sbjct: 107 YKPKLNYLCSISIAKKSW-------------KNLPKYGLKSLAEQHQISF-KHHRAGDDA 152 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLR 212 + L EK K L+ Sbjct: 153 EVCAKISLLAFEKLMITRTDEVHDVMKKNLK 183 >gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2] gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10] gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757] gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2] gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10] gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757] Length = 243 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220 >gi|116206844|ref|XP_001229231.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51] gi|88183312|gb|EAQ90780.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51] Length = 228 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D D + + D Q + ++ Sbjct: 17 DPLVWIDCEMTGLDPETDAIIEIYCIITDGQLKLLDE 53 >gi|239631926|ref|ZP_04674957.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526391|gb|EEQ65392.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 172 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 26/198 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +VI D E + +R Q + VR+ + F P+ D + + Sbjct: 1 MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFI--PSPDKFDQLHIIRTS 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + L ++ + + T I+G++ R + Sbjct: 56 NMRYSDYLALPSLQQTVRDYVA--WMRTTTDIVGWSIE------GDAGRIRETFKQGSHG 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 D+ D++ Y F+ LQ LA GI AH+A D Sbjct: 108 IPKNWKFIDIADIVGKQYNFNATPP-------------LQGLANVLGIPANRAHNALDDC 154 Query: 182 YATLALVWLIREKKPKLF 199 T ++ + + KLF Sbjct: 155 LRTFGVIKELESRDGKLF 172 >gi|325524019|gb|EGD02205.1| oligoribonuclease [Burkholderia sp. TJI49] Length = 208 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51 >gi|161525395|ref|YP_001580407.1| oligoribonuclease [Burkholderia multivorans ATCC 17616] gi|189349868|ref|YP_001945496.1| oligoribonuclease [Burkholderia multivorans ATCC 17616] gi|221201292|ref|ZP_03574332.1| oligoribonuclease [Burkholderia multivorans CGD2M] gi|221206254|ref|ZP_03579267.1| oligoribonuclease [Burkholderia multivorans CGD2] gi|160342824|gb|ABX15910.1| Exonuclease RNase T and DNA polymerase III [Burkholderia multivorans ATCC 17616] gi|189333890|dbj|BAG42960.1| oligoribonuclease [Burkholderia multivorans ATCC 17616] gi|221173563|gb|EEE05997.1| oligoribonuclease [Burkholderia multivorans CGD2] gi|221179142|gb|EEE11549.1| oligoribonuclease [Burkholderia multivorans CGD2M] Length = 211 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + E Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51 >gi|116515288|ref|YP_802917.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257142|gb|ABJ90824.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 181 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADD-YLPDPEAVFI 60 + + D ET G + + + + + + D+ +E + + + I Sbjct: 6 ENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKICHNFFQI 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 ++ E ++ +F N I N I D + + Sbjct: 66 HKKNGLMKEIKNSKEDEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHMPKLKS 125 Query: 116 DSYRW 120 Y Sbjct: 126 YFYYR 130 >gi|15837858|ref|NP_298546.1| oligoribonuclease [Xylella fastidiosa 9a5c] gi|11133792|sp|Q9PDX2|ORN_XYLFA RecName: Full=Oligoribonuclease gi|9106239|gb|AAF84066.1|AE003959_8 oligoribonuclease [Xylella fastidiosa 9a5c] Length = 193 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 31/126 (24%), Gaps = 13/126 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58 + D E G D D + A V D Q + F L EA+ Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLQML---EAMDEWNRN 70 Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 Q+ L + A+ F + N+I D + Sbjct: 71 QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQMPCLE 130 Query: 115 YDSYRW 120 + Sbjct: 131 RYFHYR 136 >gi|257482419|ref|ZP_05636460.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623748|ref|ZP_06456702.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648635|ref|ZP_06479978.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 2250] gi|330865886|gb|EGH00595.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331009756|gb|EGH89812.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 178 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|255011868|ref|ZP_05283994.1| putative exonuclease [Bacteroides fragilis 3_1_12] gi|313149703|ref|ZP_07811896.1| DNA polymerase III [Bacteroides fragilis 3_1_12] gi|313138470|gb|EFR55830.1| DNA polymerase III [Bacteroides fragilis 3_1_12] Length = 175 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 53/199 (26%), Gaps = 29/199 (14%) Query: 1 MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F D+ET G + G+ E + P ++Y + Sbjct: 1 MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANIL 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GITP+ A I + ++ +N +FD + Sbjct: 55 VHGITPEMTESLPGFHA-IYPEIKKRLQ---GKVVVAHNEQFDRNVLKRTMRMY------ 104 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 R D +++ + I L GIE H+A + Sbjct: 105 --------RLDYDELLLPEHWECTCRIYRSLGYKP---VNLSACCEREGIEL-KHHEALS 152 Query: 180 DVYATLALVWLIREKKPKL 198 D L E+ Sbjct: 153 DARGCAKLYLNYLERYRPF 171 >gi|84000359|ref|NP_001033281.1| three prime histone mRNA exonuclease 1 [Bos taurus] gi|81673840|gb|AAI09682.1| Three prime histone mRNA exonuclease 1 [Bos taurus] gi|296472395|gb|DAA14510.1| three prime histone mRNA exonuclease 1 [Bos taurus] Length = 349 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + + + +++ + + + + + + R Sbjct: 190 TGITQDQVDKAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298 >gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] Length = 209 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D+ET + + A + V + + + D E + I Sbjct: 1 MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ L + + I++ + I+ +N +FD R D Y+ Sbjct: 56 GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D ++ A PD + KL +A G+E H A D Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152 Query: 182 YATLAL 187 + Sbjct: 153 ETCAKV 158 >gi|320352856|ref|YP_004194195.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus propionicus DSM 2032] gi|320121358|gb|ADW16904.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus propionicus DSM 2032] Length = 181 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 9/176 (5%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPE 56 M ++ V D E G + D+ + A V D E + V ++ L DP Sbjct: 1 MKDNSNLVWIDLEMTGLNPFTDKILEVATVVTDSHLEILADGPVIAIHQPEEVLAAMDPW 60 Query: 57 AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFY 111 + + R + +F + N++ D + Sbjct: 61 NTQHHRESGLIDRVRRSTFTCRQAELETLEFIKQWVDKRVSPMCGNSVWHDRRFLARFMP 120 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 + + D + L + FS + D + +L+ Sbjct: 121 ELEQYFHYRNIDVSTLKELALRWAPDLPKFSKECHHLAHDDIRESIAELKHYGNCF 176 >gi|187734853|ref|YP_001876965.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila ATCC BAA-835] gi|187424905|gb|ACD04184.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila ATCC BAA-835] Length = 197 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 53/197 (26%), Gaps = 40/197 (20%) Query: 4 HFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 HF D+E+ G D+P Q + E++ A + A + G Sbjct: 12 HFAAIDFESAGAARGETDQPVQIGIAACP---RLEDEPELWTSYIAVEKPVLWSASQVHG 68 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + I ++ +N + + R F Sbjct: 69 ITTEMLADAP-SFPSLWPEIRSRL---GQAVVVGHNPATERKFLRRFPGHGFGPW----- 119 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--------NA 174 D L + R G + L L A G+ Sbjct: 120 ------LDTLALGRMC-------------VPGLADYSLSSLCGALGLTCSVEALLPARRW 160 Query: 175 HDAKADVYATLALVWLI 191 HDA D A+L +V + Sbjct: 161 HDALYDALASLLIVRFL 177 >gi|301784463|ref|XP_002927641.1| PREDICTED: ERI1 exoribonuclease 2-like [Ailuropoda melanoleuca] Length = 679 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + I + + F Sbjct: 97 TGIKQAQV-DEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D G L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRVTYKIFYGRKPKGLSGALQEVGIEFLGREH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTALLAWKMIRD 232 >gi|281339701|gb|EFB15285.1| hypothetical protein PANDA_017444 [Ailuropoda melanoleuca] Length = 672 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 30 LIVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMEL 89 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + I + + F Sbjct: 90 TGIKQAQV-DEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDW 148 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D G L GIE H Sbjct: 149 DLGVCLEYECKRKQLLKPVFLNSWI--DLRVTYKIFYGRKPKGLSGALQEVGIEFLGREH 206 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 207 SGLDDSRNTALLAWKMIRD 225 >gi|154338249|ref|XP_001565349.1| phosphotransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 574 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 65/244 (26%), Gaps = 12/244 (4%) Query: 3 NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 + +++ D E GR + +F V VD R ++ + + +P + + Sbjct: 50 DAYIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQ-RYVRPVKNPMLSRFCT 108 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT QF + + Y + Sbjct: 109 ELTGITQNMVSHRD-PFPVVYCEALQFLAEAGL----GDAPPLRSYCVVTCGDWDLKTML 163 Query: 119 RWSWDNGNSRWDLLDVMRAIY-AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + L R G+ + + D+ G+ H H + Sbjct: 164 PSQIRISGQQGTPLSFQRWCNLKKYMSGLGLRDGGERGGPTDMPDMLRILGLPHQGRHHS 223 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 D +A V K+ + + + + P + + + NT Sbjct: 224 GIDDCRNIAAVLCALLKRGLVVDTTFAT-EPLSAGTRRQKHSFLPCKNCVAPWPTALYNT 282 Query: 238 ALIA 241 I Sbjct: 283 QGIC 286 >gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] Length = 297 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 FV D ET + + Q V I + + D V + GI Sbjct: 8 SFVAIDVET--ANANMASICQIGLVEY-SNGTPIREWSSY---VNPEDYFDGMNVSVHGI 61 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + V +E S + ++ + FD F ++ W Sbjct: 62 TEGTVIGAPV-FSEVSEVLRSMLE---GRVVVCH-THFDRAAISKAFRKSGATELSCQW- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D V R + + + L ++ G HDA D A Sbjct: 116 -----LDSAKVARRAWEVCAE-----------KGYGLSAVSKMLGY-TFQHHDALEDAKA 158 Query: 184 TLALV 188 + ++ Sbjct: 159 SANIM 163 >gi|154340904|ref|XP_001566405.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063728|emb|CAM39913.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 405 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 48/189 (25%), Gaps = 17/189 (8%) Query: 5 FVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59 ++ D E + GV +D + +++ F P P Sbjct: 76 IIVVDVEATCEQHNRNYPHEVIEIPGVLIDVRTGQVDRARSFHTYVKPWRNPRLTPFCTQ 135 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + E + +++ T G I D + + + R Sbjct: 136 LTGITQEMVDAAP-SITEAVQLFEKWYRE--TIPRGAKTIFAADGPWDFKNFIHEHHILR 192 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + ++ LD+ G+ D H Sbjct: 193 DHVGFPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMHLRFD---------GRPHSGFD 243 Query: 180 DVYATLALV 188 D Y L Sbjct: 244 DAYNIARLT 252 >gi|330501616|ref|YP_004378485.1| oligoribonuclease [Pseudomonas mendocina NK-01] gi|328915902|gb|AEB56733.1| oligoribonuclease [Pseudomonas mendocina NK-01] Length = 180 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 9/129 (6%) Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPE 56 M N + + D E G + D + A + D + + V +++ L D Sbjct: 1 MQNPSNLIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSEEALAGMDEW 60 Query: 57 AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111 G + Q+ + A + F I N+I D + Sbjct: 61 NTRTHGQSGLTQRVRESRIDTAAAEAQTIAFLEQWVPKGKSPICGNSIGQDRRFLYKYMP 120 Query: 112 RNFYDSYRW 120 + Sbjct: 121 ALEAYFHYR 129 >gi|146280991|ref|YP_001171144.1| hypothetical protein PST_0596 [Pseudomonas stutzeri A1501] gi|145569196|gb|ABP78302.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 185 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 28/198 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV D E G E F + +++ P A+ +T Sbjct: 5 KEIFVSVDIEASGPIPGKYSMLSIGACV---ASNPAEQFSCFLKPISQEFV--PAALEVT 59 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYD 116 G++ ++ +G+ E + + +G+N Sbjct: 60 GLSLERLREEGLEPGEAMAQFRAWVESLADADQRVVFVGFNASFD--------------- 104 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 WS+ N L + I A + + + + S + ++ E HD Sbjct: 105 ---WSFVNYYFHLFLGENPFGIAALDIKSMYFGASECAWKSTRSSEIEKVVNPESSGNHD 161 Query: 177 AKADVYATLALVWLIREK 194 A D L LIREK Sbjct: 162 ALDDAVYQAELFNLIREK 179 >gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395] gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587] gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2] gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587] gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395] gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2] gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395] Length = 243 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220 >gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str. 13] gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens str. 13] Length = 302 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 29/184 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV D+ET + + V E F KP + P ++I GI Sbjct: 3 FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + E I + + ++ +N FD R Sbjct: 58 PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D D+ + ++ + + + KL ++ A E + H D A Sbjct: 97 --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALDFEFSHHHAG-EDARAC 153 Query: 185 LALV 188 ++ Sbjct: 154 ANIL 157 >gi|255658850|ref|ZP_05404259.1| putative exonuclease [Mitsuokella multacida DSM 20544] gi|260849253|gb|EEX69260.1| putative exonuclease [Mitsuokella multacida DSM 20544] Length = 219 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 V+ D E + + VR+D +++ + + KP + Sbjct: 4 VVVDLEMNPVSREFREVRRKLNEEVIEIGAVRLDENFQQEAEFQC-YVKP-EYGPIKKHI 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGIT A + + T I Y+ D R+ R Sbjct: 62 TSLTGITQAMVADK-KTYAACFQDFVDWVGEEETKI--YSWSMSDIKQLRSEC-RYKLPD 117 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + W N R + + + A L + H A Sbjct: 118 FDIEWLNE----------RWVDLQQEFDDRLGLHNSLALKHALGAMDHKF---EGTQHTA 164 Query: 178 KADVYATLALVWLIREKKP 196 AD T A++ L+++ Sbjct: 165 LADAINTSAILTLMQDDAK 183 >gi|269125505|ref|YP_003298875.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora curvata DSM 43183] gi|268310463|gb|ACY96837.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora curvata DSM 43183] Length = 204 Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M + V D E G D+ D + A + D + ++ KP ++ L Sbjct: 1 MNDLLVWADCEMTGLDLRKDALVEIAVLVTDSELNILDKGVDVVIKPPEEAL 52 >gi|323347541|gb|EGA81809.1| Rex2p [Saccharomyces cerevisiae Lalvin QA23] Length = 217 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 170 FMVREFPKVIDHLFYR 185 >gi|107022156|ref|YP_620483.1| oligoribonuclease [Burkholderia cenocepacia AU 1054] gi|116689101|ref|YP_834724.1| oligoribonuclease [Burkholderia cenocepacia HI2424] gi|170732389|ref|YP_001764336.1| oligoribonuclease [Burkholderia cenocepacia MC0-3] gi|254245960|ref|ZP_04939281.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia cenocepacia PC184] gi|123371764|sp|Q1BXZ5|ORN_BURCA RecName: Full=Oligoribonuclease gi|166215751|sp|A0K5Q4|ORN_BURCH RecName: Full=Oligoribonuclease gi|105892345|gb|ABF75510.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia AU 1054] gi|116647190|gb|ABK07831.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia HI2424] gi|124870736|gb|EAY62452.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia cenocepacia PC184] gi|169815631|gb|ACA90214.1| Exonuclease RNase T and DNA polymerase III [Burkholderia cenocepacia MC0-3] Length = 206 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51 >gi|241666527|ref|YP_002984611.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861984|gb|ACS59649.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 262 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 47/192 (24%), Gaps = 40/192 (20%) Query: 7 IYDYET--FGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D ET G + + V D W+ E PE + I Sbjct: 21 VVDLETAGNGLN----DVCEVGWQDVVLGHDGGWQVDEERGSLL--INPGRPISPETMAI 74 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I + F + I P +I R ++ Sbjct: 75 HHIVDAEVATAP-----FWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWIC 129 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDA 177 +W WP ++ L+ L + G+ H AH A Sbjct: 130 TWK-------------------CALRLWPEL-PRFSNQMLRYLRMPEGLVHAIGLPAHRA 169 Query: 178 KADVYATLALVW 189 D Y T + Sbjct: 170 MPDAYVTAHHLR 181 >gi|323455145|gb|EGB11014.1| hypothetical protein AURANDRAFT_6072 [Aureococcus anophagefferens] Length = 194 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 45/209 (21%), Gaps = 38/209 (18%) Query: 5 FVIYDYE------TF--GRDVALDRPAQFAGVRVDRQ-WEKIEST----EVFFCKPADDY 51 V+ D+E T + +F V VD E + F +P + Sbjct: 4 LVVVDFECTCVADTTYQKKTPFSHEIIEFPAVVVDLTLGESQDVFARPTFQRFVRPTERP 63 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSR 107 +TGI+ + A+ + P T + + + Sbjct: 64 RLSDFCTKLTGISQETV-DAAEPLADVLAAFRAWLEEQNLAPGTYAMAADGPWDLRKFLL 122 Query: 108 NIFYRNFY--DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 R D +W D LAL Sbjct: 123 GECARKHLAADPRWRTW------------------VDVSLHLRKHYDVKRPGNLENKLAL 164 Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREK 194 H D L +R Sbjct: 165 LGLAFEGRPHSGLDDARNIARLALRLRRD 193 >gi|195576205|ref|XP_002077967.1| GD23197 [Drosophila simulans] gi|194189976|gb|EDX03552.1| GD23197 [Drosophila simulans] Length = 353 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 28/138 (20%) Query: 4 HFVIYDYETFGRDVALD---RPAQF------AGVRVDRQW--------------EKIEST 40 F + D ET + + A + ++ + Sbjct: 19 TFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLTKKKEEQNQDEQQELPAAPRVLHKL 78 Query: 41 EVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNN 98 V F + DPEA ITG++ R+ ++ + ++ I F + C++ +N Sbjct: 79 NVLF---QPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135 Query: 99 IRFDDYYSRNIFYRNFYD 116 FD R F + + Sbjct: 136 WGFDFPILRQAFEKLNIE 153 >gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 976 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 44/393 (11%), Positives = 105/393 (26%), Gaps = 22/393 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ + D ET G D + V+V I + +P ++ Sbjct: 10 DNVIYLDIETTGLDETCSEIIEIGAVKVKNG--VITTYNTLI-RPRGRVPISIYSLC--- 63 Query: 63 ITPQKALRDGVVEAEFSRRI-HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ++ A I + + +N F+ + + + + Sbjct: 64 ---SDLKEADLLSARSLNSIKQEVLEFLEDLPLICHNGNFERKFLSF-----YIPEIKNT 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 + +L+ R Y + + + + L D + + Sbjct: 116 IMDSMELAIILEPWRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKVVNSLLLRQWNRE 175 Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK--LIDIQNMTPLVHVSGMFGASRSNTAL 239 + + K ++YL + L K + T + ++ + Sbjct: 176 ENSRKKDKSLHNLIIKEYQYLQKWPWTKHLLKPPFFIDEGYTYVNYLENKEEELKLKKIP 235 Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLN 298 I + + ++ I N GD D + AK++ + ++ + + + P Sbjct: 236 IDYLKYEDLLENEEI-WNNGGDFGYQYRKDQKEFAKKIRENFEKGERIFIEAPTGSGKTF 294 Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358 I+ I+ + R N L+ Q RD + Sbjct: 295 AYVIIAAIETYLNKQKNRKDDASFIISTNTKELQNQLIERDIPTILKKLRLDDKLNYGAM 354 Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF 391 + + + ++ L L F Sbjct: 355 KGKGNYLCIERINRCEEFQM---DEKGNLALLF 384 >gi|113460447|ref|YP_718509.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|170718007|ref|YP_001783526.1| exonuclease RNase T and DNA polymerase III [Haemophilus somnus 2336] gi|112822490|gb|ABI24579.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|168826136|gb|ACA31507.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus 2336] Length = 236 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 60/185 (32%), Gaps = 23/185 (12%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +++ D+ET G + +D A V +D ++ ++ + A+ + V I I Sbjct: 51 SYLVIDFETTGLNSMMDNILSVATVPIDNL--TLDISKAWHQFVAEQQEIKEDTVIINHI 108 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 PQ + ++ + +I + + + + R + W Sbjct: 109 LPQMLNGA-ETLDDTMNKLFELMQ--GRILIAHGSTIEKRFILHYLNVRYNLSQFPLFW- 164 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D L + R++ D +++L + + H+A D + Sbjct: 165 -----LDTLKIERSLC------------QDNENNYQLSHIRNKYNLPEYIGHNALIDAIS 207 Query: 184 TLALV 188 L Sbjct: 208 AGELF 212 >gi|326385547|ref|ZP_08207181.1| transposase [Novosphingobium nitrogenifigens DSM 19370] gi|326209881|gb|EGD60664.1| transposase [Novosphingobium nitrogenifigens DSM 19370] Length = 307 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 50/178 (28%), Gaps = 31/178 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 FV+ D ET + Q V R ++ + E P V I GIT Sbjct: 33 FVVVDVET--ACARVSSICQIGIVGF-RDGREMFAYETL---VDPRDEFAPFNVAIHGIT 86 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + IH + + FD + W Sbjct: 87 ADRVDGEPTF-----DDIHGIVDAHLRGRVTVAHSLFDKSALAAACGVSGQPVIETEW-- 139 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 LD +R WP S +L LA GIEH HDA +D Sbjct: 140 -------LDSVRVAKL------AWPQLQ----SHRLNVLARFLGIEH-RHHDALSDAR 179 >gi|319761926|ref|YP_004125863.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus denitrificans BC] gi|330826210|ref|YP_004389513.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] gi|317116487|gb|ADU98975.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans BC] gi|329311582|gb|AEB85997.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] Length = 203 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 + V D E G + +R + A V E V D L +A Sbjct: 28 QNLVWLDCEMSGLNPETERLLEIAVVVTGPGLEPRVEGPVLVIHQPDTVLDAMDAWNKGT 87 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K + EA+ ++I F S + N+I D + R Sbjct: 88 HGRSGLIDKVRASTLTEADAEQQIIDFLSRYVPKGKVPMCGNSIGQDRRFLVKYMPRLEA 147 Query: 116 DSYRW 120 + Sbjct: 148 FFHYR 152 >gi|328776163|ref|XP_003249125.1| PREDICTED: hypothetical protein LOC100577651 [Apis mellifera] Length = 321 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%) Query: 1 MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQ--WEKIE----STEVFFCKPADDYL 52 M F+ +D ET G + + + + V R + + + Sbjct: 1 MIRTFIFFDLETTGLITKNCMPKVTELSLIAVSRTAVCNTKDFLPRVLQKLILPIHPNLN 60 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIF 110 E +TG++ + + I F + TC + YN FD + Sbjct: 61 ISKEIETLTGLSNENLCEIQHFNCDVYNLIINFINRQKAPTCFVAYNGNNFDYPILLSE- 119 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGI 169 + S+ D+L +++ + + ++ + + + ++ L Sbjct: 120 ----LKTIDKSFSENILSIDMLQLIKDFFLREEPIKKMNNQINNSCNIEVSTLLNDGYDK 175 Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLY-DYRNKNQLRKLIDIQNMTPLVHVSG 228 +A D+ + ++ +K + N K+ ++ TP + Sbjct: 176 ILSDALDSIINTNDDNKNDTFLKIEKTMSHSNSISNTSETNYCTKMQELNEKTPKNQIIK 235 Query: 229 MFGASRSN 236 + + ++ Sbjct: 236 IQHSDKNF 243 >gi|327400242|ref|YP_004341081.1| DNA polymerase III subunit epsilon [Archaeoglobus veneficus SNP6] gi|327315750|gb|AEA46366.1| DNA polymerase III, epsilon subunit [Archaeoglobus veneficus SNP6] Length = 196 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 64/215 (29%), Gaps = 25/215 (11%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ + + D E+ G + D A + + + +P E++ Sbjct: 5 LSARYSVIDVESTGLNPKKDEIVAIAVIPMVGSRIILSDYFFSLVRPKK---LKGESIKY 61 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI + + + R+ I + FD ++ F R Sbjct: 62 HGIDIKAVSKAPE-FQSIASRLKHMLEDS----IIVSYTEFDAKILKSHFSRLKI----- 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D +D+ + + + ++ A + + L +E + H A AD Sbjct: 112 -----RLELDCIDISQVEHWIA-------RKEGRAENHDMDGLIKKYSLEEIYRHSALAD 159 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215 Y T + K + L + + + K Sbjct: 160 AYYTACIFQRQLVKLAEYGVTLQELKRIGKREKFF 194 >gi|323303994|gb|EGA57774.1| Rex2p [Saccharomyces cerevisiae FostersB] Length = 186 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 21/137 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRWS 121 + F + Sbjct: 170 FMVREFPKVIDQCXFTE 186 >gi|320162584|gb|EFW39483.1| three prime histone mRNA exonuclease [Capsaspora owczarzaki ATCC 30864] Length = 897 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 6/89 (6%) Query: 5 FVIYDYETF-----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 FV+ DYE +F V V+ + +I + + +P + P Sbjct: 576 FVVIDYEATCEENASFSTYPHEIIEFPAVVVNARTGEIVHSWRSYVRPVLNPTLTPFCTQ 635 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV 88 +TGIT + V E + + F Sbjct: 636 LTGITQSQVDASPVFE-DVFEQFVVFLRD 663 >gi|149633012|ref|XP_001508919.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1 [Ornithorhynchus anatinus] Length = 467 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 66/225 (29%), Gaps = 24/225 (10%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+E G +F V ++ +IE T + +P + + + Sbjct: 248 ICVIDFEATCEEGNPPEFIHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 307 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT Q + + +++ ++ +I D + + F Sbjct: 308 TGIT-QDVVDRADTFPQVLQKVVEWMRQKELGTKYKYSILTDGSWDMSKFLTIQCRISHL 366 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + +W I + + P KL + G+ + H Sbjct: 367 KYPAFAKKW------INIRKSYGNFYKVPRSQT-----KLAIMLEKLGMSYAGRPHSGLD 415 Query: 180 DVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 D + ++++ K +L + + TP+ Sbjct: 416 DSKNIARIAVRMLQDGCQ------LRVNEKMHAGQLTSVTSATPI 454 >gi|160872136|ref|ZP_02062268.1| oligoribonuclease Orn [Rickettsiella grylli] gi|159120935|gb|EDP46273.1| oligoribonuclease Orn [Rickettsiella grylli] Length = 181 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D D+ + A + D Q E IE Sbjct: 7 NLIWIDLEMTGLDTNQDKIIEIATIITDSQLEIIEE 42 >gi|297682312|ref|XP_002818868.1| PREDICTED: 3'-5' exoribonuclease 1-like [Pongo abelii] Length = 349 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298 >gi|240142475|ref|YP_002966986.1| hypothetical protein MexAM1_META2p0806 [Methylobacterium extorquens AM1] gi|240012420|gb|ACS43645.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 194 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 50/201 (24%), Gaps = 25/201 (12%) Query: 2 TNHFVIYDYETF----GRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 T+ + D E G + V D +I E + +PA Sbjct: 6 TDRILAIDTEWTCWEGGAPPGMRSEILEIGIVEADVATLEILREESWLVRPA-YSEVSGY 64 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGI +A R G E R + + F ++ + D + Sbjct: 65 CERLTGIAGDEARRFGRPLPEVMRTLTKQFGPSRKALVSW---GDDLGGIEAECRAFGVE 121 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + R + + S LA H Sbjct: 122 NPFR---------------RELAVDFGLVHALSAGCRERPSLD-AALAAEGVPFEGRRHR 165 Query: 177 AKADVYATLALVWLIREKKPK 197 A D AT+ L ++ Sbjct: 166 ALPDALATMRLFLAFAARQRP 186 >gi|206561254|ref|YP_002232019.1| oligoribonuclease [Burkholderia cenocepacia J2315] gi|198037296|emb|CAR53218.1| oligoribonuclease [Burkholderia cenocepacia J2315] Length = 206 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51 >gi|115351008|ref|YP_772847.1| oligoribonuclease [Burkholderia ambifaria AMMD] gi|172060013|ref|YP_001807665.1| oligoribonuclease [Burkholderia ambifaria MC40-6] gi|122323700|sp|Q0BH60|ORN_BURCM RecName: Full=Oligoribonuclease gi|115280996|gb|ABI86513.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] gi|171992530|gb|ACB63449.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria MC40-6] Length = 206 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51 >gi|148272620|ref|YP_001222181.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830550|emb|CAN01485.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 206 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 11/128 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60 + V D E G D+A+D + A V D ++ P L + + Sbjct: 6 DRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDDGFTIVINPDPAALANMGEFVTEM 65 Query: 61 T---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 G+ + + GV E + Q I N I D + R Sbjct: 66 HRSSGLLDE--IPAGVSLADAEFAVLEYLLQHVPTGGKAPIAGNTIGTDRAFLAKYMPRV 123 Query: 114 FYDSYRWS 121 + S Sbjct: 124 DAHLHYRS 131 >gi|153811608|ref|ZP_01964276.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174] gi|149832349|gb|EDM87434.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174] Length = 319 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 45/346 (13%), Positives = 93/346 (26%), Gaps = 45/346 (13%) Query: 4 HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G+ + R + V+++ Q E ++ + KP Sbjct: 2 NYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVVDVFQ-RLVKPQVYNWIHD 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + + G + + +F + D + Sbjct: 61 SIHEVIHVDYKDLAD-GEPFQQA---VREFLKWCGEEYVFCTWGNQDVMELQRNMKYYGM 116 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 S + +D+ + + + D K QD H Sbjct: 117 LSLL---PGPVTYYDVQKIYGICHEEAGGRRSLEFAIDQMGIPKAQDF-----------H 162 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF----- 230 A D T + + + + Y+N ++ I I T +VS F Sbjct: 163 RALTDARYTGDIFKTLEPAAVCVNSSIDVYQNPKNKKEEIFISYPTYDQYVSREFADKEK 222 Query: 231 -GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289 R + PV P + N S + L H +KG V Sbjct: 223 VMKDREVASTRCPVCHMPAKRKIRWFMNNSRAYE----------SVSLCQKHGYIKGKVR 272 Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335 I+ + + + +++ E + RQ Sbjct: 273 --IRHTDEDAYYAIKKLKRIEEKDAEEIREKRDSLRKKRQAKRQSE 316 >gi|330899885|gb|EGH31304.1| oligoribonuclease [Pseudomonas syringae pv. japonica str. M301072PT] Length = 178 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NWFHYR 129 >gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f. nagariensis] gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f. nagariensis] Length = 1059 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 23/169 (13%) Query: 35 EKIESTEVFFCKPADDYLP---DPEAVFITGITPQKALRDGVVEA---EFSRRIHQFFSV 88 + I T P P DP +TGITP L F ++Q Sbjct: 8 QLIGDTFSSLVNPNGRGRPVQMDPRVTSLTGITPDMLLHAPGEPWVALAFLCWLYQRCRA 67 Query: 89 PN---TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145 ++G+N +D + + R W ++D +R + Sbjct: 68 GGGVRPALVGHNLRVYDSPFLARMLARQGCLVPY--------SWCMVDSLRLARRWKL-- 117 Query: 146 IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194 G FKLQ L I + H A D T+ ++ + Sbjct: 118 ----WSSRGGGDFKLQSLRELYNIPRRDEHRALPDALVTVDVLAAMVRH 162 >gi|261210895|ref|ZP_05925185.1| hypothetical protein VCJ_001149 [Vibrio sp. RC341] gi|260839870|gb|EEX66470.1| hypothetical protein VCJ_001149 [Vibrio sp. RC341] Length = 156 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%) Query: 12 TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71 T G + +D KI +F KP D + +TGITP+K + Sbjct: 3 TTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEHDEI-SLFCAELTGITPRKIEKQ 55 Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 G AE + + + F N + DD + + N + + + Sbjct: 56 GRPLAEVLQSMVKNFGGSNKIYASW---GRDDRILIHECQEKGIPVPFQEFLNLATLYRI 112 Query: 132 LDVMRAIYA 140 ++ Sbjct: 113 QHRLKDKRI 121 >gi|238917958|ref|YP_002931475.1| sporulation inhibitor KapD [Eubacterium eligens ATCC 27750] gi|238873318|gb|ACR73028.1| sporulation inhibitor KapD [Eubacterium eligens ATCC 27750] Length = 324 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 29/239 (12%) Query: 1 MTNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M ++++ D E G+ + D Q +V+ + + ++ + KP Sbjct: 1 MFMNYIVMDLEWNQSAKGKQFSEDHFPFEIIQIGAAKVNEKLDIVDEWQCTI-KPQVYTK 59 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 I GIT +F + +F D R Sbjct: 60 LQNTVRKILGITENDLANG----TDFVSGVTEFLEWCGDDYTFVTWGSMDITELRRNMKF 115 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 DL + + DG T L+ GI+ Sbjct: 116 YDVPENF---PKPLLYLDLQKLYSINF------------SDGKTRMNLKSAIDEQGIKGD 160 Query: 173 NA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 H A +D T ++ + + K F + + + + + T ++S F Sbjct: 161 EHYHSAMSDARYTAKIMKKLDFDRVKKFCSIDTFTIPESRKDEVYLNFGTYEKYISKGF 219 >gi|258514625|ref|YP_003190847.1| Exonuclease RNase T and DNA polymerase III [Desulfotomaculum acetoxidans DSM 771] gi|257778330|gb|ACV62224.1| Exonuclease RNase T and DNA polymerase III [Desulfotomaculum acetoxidans DSM 771] Length = 957 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M +FV+ T G D + + + VRV +I T F+ KPA + I Sbjct: 1 MLENFVVAHIITTGNDPLKEDVIETSLVRV--SGSQIAETISFYSKPARKLPVRVK--NI 56 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF 86 TG++ + E I F Sbjct: 57 TGLSDETLADKP-FFNELLPEILSFI 81 >gi|254480996|ref|ZP_05094242.1| exonuclease superfamily protein [marine gamma proteobacterium HTCC2148] gi|41582287|gb|AAS07901.1| oligoribonuclease [uncultured marine bacterium 463] gi|214038791|gb|EEB79452.1| exonuclease superfamily protein [marine gamma proteobacterium HTCC2148] Length = 182 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 12/36 (33%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D D + A + D + Sbjct: 6 NLVWVDLEMTGLDPDEDVVIEIATIVTDSDLNTLAE 41 >gi|330951466|gb|EGH51726.1| oligoribonuclease [Pseudomonas syringae Cit 7] Length = 178 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTVSMAEAETQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|149010360|ref|ZP_01831731.1| exonuclease [Streptococcus pneumoniae SP19-BS75] gi|303254460|ref|ZP_07340566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|303259905|ref|ZP_07345880.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|303262320|ref|ZP_07348264.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|303264742|ref|ZP_07350660.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] gi|303267563|ref|ZP_07353409.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|303269154|ref|ZP_07354933.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|147764841|gb|EDK71770.1| exonuclease [Streptococcus pneumoniae SP19-BS75] gi|301801833|emb|CBW34546.1| putative exonuclease [Streptococcus pneumoniae INV200] gi|302598627|gb|EFL65667.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|302636643|gb|EFL67134.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|302639110|gb|EFL69570.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|302641341|gb|EFL71709.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|302642912|gb|EFL73213.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|302645829|gb|EFL76058.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] Length = 196 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] Length = 436 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 52/401 (12%), Positives = 104/401 (25%), Gaps = 35/401 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQ--FAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M FV D+ET + + A V+ KI + F P + + + Sbjct: 1 MLFDFVAIDFET--ANNNFNSACSLGIAAVK----NNKICKKDYFLIHP-PTLDFNKKNI 53 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GITP+ + + IH +F II +N FD +N Sbjct: 54 SINGITPKDIENSPL-FPDIWNDIHTYFDDN---IIIAHNAVFDMSVLKN---CLLEYDI 106 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 N + + L+D A G++ + H++ Sbjct: 107 SMPNFNYICSIPISTKLCGGKGIGK---------------SLEDRAKYFGVDLGHHHNSL 151 Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 D A LV ++ K + + + K N + + + Sbjct: 152 DDAAACANLVIECIKRAHKKNLESFCHTYTSLPIKTFKDLNPQKGFIANTKNSFTNNKFN 211 Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298 + P + + N + V + L ++ G + Sbjct: 212 TVKISEIKPDNDNIIDTSNPFYNKNVVFTGELKSLGRKEAMQKVVNLGGTLKSGVSKKTD 271 Query: 299 KCPI-LMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDV 356 + + EN + ++ + NK + + Sbjct: 272 YLIVGNQDKSLVGENGISSKEEKAAELNENGSSIKILNESEFLELIKTPNKENSFDDSNE 331 Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLP 397 L + ++++ + LS D Sbjct: 332 VVDLNSTIIFNTLDDKINKLR--EWKLLSRTAADLKDIYYK 370 >gi|126335884|ref|XP_001375011.1| PREDICTED: similar to 3-5 exonuclease TREX1 [Monodelphis domestica] Length = 284 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 30/210 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-----------------EVFF 44 V D E G + + + V + R + + Sbjct: 1 METLVFMDLEATGLPFSQPKVTELCLVAIHRHALEASQQAPPPGGASSVPPTPRVADKLC 60 Query: 45 CKPADDYLPDPEAVFITGITPQKALRD--GVVEAEFSRRIHQFFS--VPNTCIIGYNNIR 100 A A +TG+ G ++ + + F P C++ +N R Sbjct: 61 LCVAPGKACSAAASSLTGLNTAMLTAHRRGPFDSALADLLQAFLRRQRPPLCLVAHNGDR 120 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 FD + + S G D + +RA+ P P S+ L Sbjct: 121 FDFPLLQAELSAAGLGTDALS---GAFCADSITALRALDRSGP-----PIESSQRKSYSL 172 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 ++ A G + H A+ DV A +++ Sbjct: 173 GNVYARLFGQAAPDTHTAEGDVLALVSVCQ 202 >gi|115352016|ref|YP_773855.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] gi|115282004|gb|ABI87521.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] Length = 180 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 33/203 (16%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPE 56 M ++ F+ D ET G + + + F C+ DP+ Sbjct: 1 MKSNREVFLSVDVETSGPIPGEFSLLTIGA------CDVFDPQQTFSCELKPTTRNADPK 54 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIFY 111 A+ +TG++ + RDG+ ++ + +G+N FD + F+ Sbjct: 55 ALEVTGLSLDRLERDGLDPVVGMQKFRDWVISTAGPDATPVFVGFNAP-FDWSFVNYYFH 113 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R Y G + D+ + + +A A Sbjct: 114 R-----YLGENPFGFAALDIKSMYMGAA------------RSSWAQTRSSQIAAALNPTL 156 Query: 172 VNAHDAKADVYATLALVWLIREK 194 HDA D L LI+++ Sbjct: 157 KGDHDALHDAQYQAELFRLIQQR 179 >gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF] gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE] gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU] gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900] gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056] gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058] gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059] gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059] gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii AYE] gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii] gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2] gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715] gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059] Length = 220 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 31/211 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D Q + P + D ++ G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + +++ ++ +N FD + + R+ Sbjct: 84 IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + ++D + + L + GIE Sbjct: 144 -----TKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203 AH A D T L I K Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216 >gi|146307535|ref|YP_001188000.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] gi|145575736|gb|ABP85268.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] Length = 182 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 23/188 (12%) Query: 6 VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E T G + + V + + + F KP +T Sbjct: 5 LVIDLEATTDEGGWPLEEMEIIEIGASLVGADGHERDHFQ-RFVKPQRRPCLTDFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120 I G + ++ ++ ++G+ + +D + ++ Sbjct: 64 HIAQADVDSAG-SLPQVWAQLERWLEQHAPRLVGWSSWGDYDRRQLEQEWRQHQL----T 118 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S G +L P ++ +L L H A D Sbjct: 119 SLLQGTPHLNLKQAFAKARQL-------PRPVGLHSALQLAGLQFQ-----GAQHRALTD 166 Query: 181 VYATLALV 188 T L+ Sbjct: 167 ARNTARLL 174 >gi|66043831|ref|YP_233672.1| oligoribonuclease [Pseudomonas syringae pv. syringae B728a] gi|75503630|sp|Q4ZYY8|ORN_PSEU2 RecName: Full=Oligoribonuclease gi|63254538|gb|AAY35634.1| Exonuclease [Pseudomonas syringae pv. syringae B728a] gi|330971545|gb|EGH71611.1| oligoribonuclease [Pseudomonas syringae pv. aceris str. M302273PT] Length = 178 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NWFHYR 129 >gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays] gi|195650883|gb|ACG44909.1| exonuclease [Zea mays] Length = 302 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 32/197 (16%) Query: 1 MTNHFVIYDYETF-----GRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPD 54 M + V +D ET G +F + V R+ ++ S + L Sbjct: 3 MRDEIVFFDVETTAPSAAGPGRWW--LLEFGAILVCPRKLVEVGSYDTL---IRPGDL-S 56 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + T + + + +I G+N RFD R Sbjct: 57 AVSRRFTDDVEAAIMASAPPFKDVADKIFDILD--GRVWAGHNIQRFD-----CPRIREA 109 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + D L+V+ A + K+ LA GI Sbjct: 110 FADIGRPAPEPVGVIDSLNVLAAHFGRRA------------GDLKMATLATYFGIG-KQK 156 Query: 175 HDAKADVYATLALVWLI 191 H D L ++ Sbjct: 157 HRGLDDARMNLEVLKHC 173 >gi|291613511|ref|YP_003523668.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans lithotrophicus ES-1] gi|291583623|gb|ADE11281.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans lithotrophicus ES-1] Length = 181 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 N+ V D E G DR + A V D + + V +D L D Sbjct: 5 QNNLVWIDMEMTGLLPDTDRIIEVALVVTDSELNTVAEAPVLVVHQSDSVLDGMDNWNKS 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 G + K + +A ++ F T + N+I D + + Sbjct: 65 THGKSGLIDKVKASTLDDAMVEAQMLAFLQEHVPTRTSPMCGNSICQDRRFLARWMPKLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 DYFHYR 130 >gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046] gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046] Length = 219 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 31/199 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + + + P + D ++ G Sbjct: 23 VVVDVETAGFNAQTDALLEIAAIPIIYNEEGQFVPGPAHHAHINPFEGANLDRRSLDFIG 82 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + +++ N ++ +N FD + + R Sbjct: 83 IDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQAAIARTG 142 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + + D + + L + GIE Sbjct: 143 -----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LAKSCIQAGIEFDGR 184 Query: 173 NAHDAKADVYATLALVWLI 191 AH A D T L I Sbjct: 185 EAHSALYDTQKTAELFCYI 203 >gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] Length = 309 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD R+ ++ Sbjct: 57 RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|269968559|ref|ZP_06182563.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269826843|gb|EEZ81173.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 103 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 17/104 (16%) Query: 3 NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E + G + +D +I ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96 +TGITP+K + G E + + + F N + Sbjct: 58 -SLFCAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIFASW 100 >gi|262403997|ref|ZP_06080552.1| hypothetical protein VOA_001985 [Vibrio sp. RC586] gi|262349029|gb|EEY98167.1| hypothetical protein VOA_001985 [Vibrio sp. RC586] Length = 156 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 10/132 (7%) Query: 12 TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71 T G + +D I +F KP D + +TGITP+K + Sbjct: 3 TTG------EIIEVGLAEIDLSAGTIVKRAQYFVKPEKDEI-SLFCAELTGITPRKIEKQ 55 Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 G AE + + + F N + DD N + N + + + Sbjct: 56 GRPLAEVLQSMVKNFGGSNKIYASW---GRDDRILINECREKGIPVPFQEFLNLATLYRI 112 Query: 132 LDVMRAIYAFSP 143 ++ Sbjct: 113 QHRLKDKRIGHR 124 >gi|145223130|ref|YP_001133808.1| oligoribonuclease [Mycobacterium gilvum PYR-GCK] gi|145215616|gb|ABP45020.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium gilvum PYR-GCK] Length = 214 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 44/206 (21%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D E G D+ D + A + D + + A+D D +T Sbjct: 6 DELVWIDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIH-AEDSALDSMIDVVT- 63 Query: 63 ITPQKALRDGVVE-----------AE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 Q + G++E AE I + T + N+I D + Sbjct: 64 ---QMHTKSGLIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARD 120 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 + D Y S L + Sbjct: 121 MPK--LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------QP 154 Query: 170 EHVNAHDAKADVYATLALVWLIREKK 195 E AH A AD++ ++ + R+ Sbjct: 155 EKGLAHRALADIHESIRELRYYRQTA 180 >gi|170700979|ref|ZP_02891961.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria IOP40-10] gi|170134119|gb|EDT02465.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria IOP40-10] Length = 206 Score = 51.0 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDV 51 >gi|15900868|ref|NP_345472.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4] gi|111657353|ref|ZP_01408111.1| hypothetical protein SpneT_02001430 [Streptococcus pneumoniae TIGR4] gi|116515938|ref|YP_816361.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39] gi|148984737|ref|ZP_01818005.1| exonuclease [Streptococcus pneumoniae SP3-BS71] gi|148988438|ref|ZP_01819885.1| exonuclease [Streptococcus pneumoniae SP6-BS73] gi|149002547|ref|ZP_01827481.1| exonuclease [Streptococcus pneumoniae SP14-BS69] gi|149006328|ref|ZP_01830040.1| exonuclease [Streptococcus pneumoniae SP18-BS74] gi|149019585|ref|ZP_01834904.1| exonuclease [Streptococcus pneumoniae SP23-BS72] gi|168483063|ref|ZP_02708015.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC1873-00] gi|168491083|ref|ZP_02715226.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC0288-04] gi|168494423|ref|ZP_02718566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC3059-06] gi|168575656|ref|ZP_02721592.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae MLV-016] gi|169834430|ref|YP_001694438.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae Hungary19A-6] gi|225854497|ref|YP_002736009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA] gi|225858787|ref|YP_002740297.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585] gi|237650859|ref|ZP_04525111.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974] gi|237822226|ref|ZP_04598071.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974M2] gi|307127457|ref|YP_003879488.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 670-6B] gi|14972467|gb|AAK75112.1| exonuclease [Streptococcus pneumoniae TIGR4] gi|116076514|gb|ABJ54234.1| exonuclease [Streptococcus pneumoniae D39] gi|147759484|gb|EDK66476.1| exonuclease [Streptococcus pneumoniae SP14-BS69] gi|147762105|gb|EDK69067.1| exonuclease [Streptococcus pneumoniae SP18-BS74] gi|147923128|gb|EDK74243.1| exonuclease [Streptococcus pneumoniae SP3-BS71] gi|147926119|gb|EDK77193.1| exonuclease [Streptococcus pneumoniae SP6-BS73] gi|147930960|gb|EDK81940.1| exonuclease [Streptococcus pneumoniae SP23-BS72] gi|168996932|gb|ACA37544.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae Hungary19A-6] gi|172043421|gb|EDT51467.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC1873-00] gi|183574623|gb|EDT95151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC0288-04] gi|183575623|gb|EDT96151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC3059-06] gi|183578481|gb|EDT99009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae MLV-016] gi|225720810|gb|ACO16664.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585] gi|225723767|gb|ACO19620.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA] gi|301799966|emb|CBW32552.1| putative exonuclease [Streptococcus pneumoniae OXC141] gi|306484519|gb|ADM91388.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 670-6B] gi|332075608|gb|EGI86076.1| exonuclease family protein [Streptococcus pneumoniae GA17545] gi|332201459|gb|EGJ15529.1| exonuclease family protein [Streptococcus pneumoniae GA47368] gi|332202848|gb|EGJ16917.1| exonuclease family protein [Streptococcus pneumoniae GA41317] Length = 196 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|309812148|ref|ZP_07705906.1| oligoribonuclease [Dermacoccus sp. Ellin185] gi|308433835|gb|EFP57709.1| oligoribonuclease [Dermacoccus sp. Ellin185] Length = 209 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 T+ V D E G D+ D + A + D + ++ KP Sbjct: 12 TDRIVWIDCEMTGLDLENDALIEVAALVTDFELNQLGDGVDVVIKPEP 59 >gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586] gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586] Length = 224 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNR 201 >gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341] gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341] Length = 224 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNR 201 >gi|94311778|ref|YP_584988.1| exonuclease [Cupriavidus metallidurans CH34] gi|93355630|gb|ABF09719.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34] Length = 194 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 16/139 (11%) Query: 1 MTNHFVIYDYETF-------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 M ++ D E G ++ A+ V V ++ + F +P + Sbjct: 1 MNAPVLVVDLEATCSEDMAAGWEMET---AEIGAVWVRGNGTVLDHFQSF-VRPVVNPQL 56 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110 +TGI+ + + ++ QF P + + + + Sbjct: 57 TAFFTNLTGISQSDVDDAPL-FTVAAEQLRQFVERYQMPGSIWVSWGAWDARQLLRDSAR 115 Query: 111 YRNFYDSYRWSWDNGNSRW 129 YR + NG + Sbjct: 116 YR-IAEPIALPHQNGKRLF 133 >gi|71733293|ref|YP_272859.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|298484922|ref|ZP_07003021.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123638427|sp|Q48P10|ORN_PSE14 RecName: Full=Oligoribonuclease gi|71553846|gb|AAZ33057.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|298160609|gb|EFI01631.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330886590|gb|EGH20251.1| oligoribonuclease [Pseudomonas syringae pv. mori str. 301020] Length = 178 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NWFHYR 129 >gi|88704503|ref|ZP_01102217.1| oligoribonuclease [Congregibacter litoralis KT71] gi|88701554|gb|EAQ98659.1| oligoribonuclease [Congregibacter litoralis KT71] Length = 188 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 15/128 (11%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDP 55 + + D E G D DR + A + D + ++ + Sbjct: 10 NLIWVDMEMTGLDPDGDRVIEIATIVTDSDLHPLAEGPVIAIHQSDAVLEAMDEWNTSHH 69 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 A + + + EAE +R F + N+I D + Sbjct: 70 GASGLC----DRVRASVIDEAEATRLTIAFLENWVPAGASPMCGNSICQDRRFMARHLPE 125 Query: 113 NFYDSYRW 120 + Sbjct: 126 LESYFHYR 133 >gi|330965973|gb|EGH66233.1| oligoribonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 178 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NWFHYR 129 >gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573] gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603] gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451] gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603] gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573] gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451] Length = 224 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201 >gi|221231753|ref|YP_002510905.1| exonuclease [Streptococcus pneumoniae ATCC 700669] gi|220674213|emb|CAR68744.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669] Length = 196 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|195392333|ref|XP_002054812.1| GJ24646 [Drosophila virilis] gi|194152898|gb|EDW68332.1| GJ24646 [Drosophila virilis] Length = 187 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 15/47 (31%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 V D E G + D+ + A + D+Q F + Sbjct: 14 IVWMDLEMTGLSIDKDQILEVACIITDKQLNIKAECLCFAIRHPPQV 60 >gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens AM1] gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens AM1] Length = 297 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 47/183 (25%), Gaps = 29/183 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + D + + E +P P + + GI P Sbjct: 4 VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ESRLIRP-PQLRFSPGNIRVHGILP 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E I +F + ++ +N FD W Sbjct: 59 ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ PD L +A GI + HDA D +A Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVASRLGIRFEH-HDAGEDAFACA 154 Query: 186 ALV 188 + Sbjct: 155 EIA 157 >gi|163842028|ref|YP_001626433.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209] gi|162955504|gb|ABY25019.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209] Length = 215 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 35/125 (28%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60 + V D E G D+ D + A + D + ++ D + P+A + Sbjct: 5 SERIVWIDCEMTGLDLEADALIEVAVLITDSELNILDDGV--------DVVIKPDAAALA 56 Query: 61 --------------------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100 G+T A + I +F P +G N+I Sbjct: 57 QMNDFVRNMHTTSKLLDELPNGLT--MAAAQDI----VLTYIKKFLPDPGKAQLGGNSIG 110 Query: 101 FDDYY 105 D + Sbjct: 111 TDKMF 115 >gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 204 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 23/173 (13%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET Q + + VD + I + + FF + +P A I G Sbjct: 2 KLLFFDTETTSIKP--GSICQLSYITVDASSKPQITTGKNFFFTVDE---MNPSAQEIHG 56 Query: 63 ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + +K L DG + + F + + +N+ FD + ++ D Sbjct: 57 FSLEKLYELSDGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + D + P + + KL+++ GI Sbjct: 115 HS-------------FCTMIYYKDICKMPKANGEIKNPKLEEVVNFLGITKDQ 154 >gi|66472518|ref|NP_001018450.1| 3'-5' exoribonuclease 1 [Danio rerio] gi|63100708|gb|AAH95343.1| Exoribonuclease 1 [Danio rerio] gi|182888732|gb|AAI64140.1| Eri1 protein [Danio rerio] Length = 337 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 15/171 (8%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 + D+E +F V +D E ++S + + KP V Sbjct: 118 ICVVDFEATCEENNPPDYLHEIIEFPMVLIDTHTLEIVDSFQE-YVKPVLHPQLSEFCVK 176 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIG-YNNIRFDDYYSRNIFYR 112 +TGIT + + +R + + + + +++ R Sbjct: 177 LTGITQEMVDEA-KTFHQVLKRAISWLQEKELGTKYKYMFLTDGSWDMGKFLHTQCKLSR 235 Query: 113 NFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R DG L D Sbjct: 236 IRYPQFARKWINIRKSYGNFYKVPRTQTKLICMLENLGMEYDGRPHCGLDD 286 >gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114] gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11] gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114] gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11] Length = 222 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 55/201 (27%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D Q +T F P + + EA+ G Sbjct: 21 VVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGANIEKEALEFNG 80 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I + I+ +N FD + R Sbjct: 81 IRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHSFVMEAAARTKL 140 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--N 173 + D + L G++ Sbjct: 141 K------RIPFHPFCTFDTAAISGLALGQTV-------------LAKACKTAGMDFDGKE 181 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I K Sbjct: 182 AHSALYDTEKTAELFCRIVNK 202 >gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] Length = 297 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 48/189 (25%), Gaps = 29/189 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + D + + E +P P + + GI P Sbjct: 4 VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ESRLIRP-PQLRFSPGNIRVHGILP 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E I +F + ++ +N FD W Sbjct: 59 ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ PD L +A GI + HDA D +A Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154 Query: 186 ALVWLIREK 194 + + Sbjct: 155 EIALAALHE 163 >gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16] gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16] Length = 213 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V ++D + + ST F +P + + EA+ G Sbjct: 14 VVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEGANIEKEALDFIG 73 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + P LR + E+E + I++ + + II +N +FD + R+ Sbjct: 74 LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMEASDRSKL 133 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + L + + A ++ AH Sbjct: 134 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNKEAH 176 Query: 176 DAKADVYATLALVWLIREK 194 A D T L I K Sbjct: 177 SALYDTKKTAELFCGIVNK 195 >gi|126334116|ref|XP_001366655.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 696 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 14/200 (7%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +I D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 38 LIIIDFESTCWNDGKHHYSQEIIEFPAVLLNTLTGEIESEFQTYVQPEEHPILSKFCIEL 97 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCII--GYNNIRFDDYYSRNIFYRNF 114 TGI + +GV ++F + IH NN + + + ++ Sbjct: 98 TGIKQAQV-DEGVPLKICLSQFCKWIHLIQQQKKITFAPSITNNSASEVKSCAFVTWSDW 156 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 ++ + + + + R S LQ+L + Sbjct: 157 DLGVCLEYECRRKQLRKPIFLNSWIDLRATYKLFYRRKPKGLSGALQELGIEFS---GRE 213 Query: 175 HDAKADVYATLALVWLIREK 194 H D T L W + Sbjct: 214 HSGLDDSRNTAHLAWRMIRD 233 >gi|322788644|gb|EFZ14245.1| hypothetical protein SINV_00413 [Solenopsis invicta] Length = 189 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 V D E G DV D + A + D+ I Sbjct: 21 IVWIDLEMTGLDVDKDHILEIACLVTDKNLNVISE 55 >gi|315656346|ref|ZP_07909235.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492905|gb|EFU82507.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 198 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 19/128 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------- 56 V D E G D+ +D + A + D + ++S KP+ + Sbjct: 2 VWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMGEFVREMHTK 61 Query: 57 ----AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 A TG++ ++A R + + + P + N++ D + Sbjct: 62 SGLLAKLDTGLSVEEAGR------QVLDYVKRLVPEPGKAQLAGNSVHSDKAFLAKQMPE 115 Query: 113 NFYDSYRW 120 + Sbjct: 116 LINWLHYR 123 >gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 3502] gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] Length = 309 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD R+ ++ Sbjct: 57 RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|320529722|ref|ZP_08030801.1| exonuclease [Selenomonas artemidis F0399] gi|320138083|gb|EFW29986.1| exonuclease [Selenomonas artemidis F0399] Length = 221 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 27/204 (13%) Query: 1 MTNHFVIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M ++ D E G++ + VR+ ++ + + + + C + L Sbjct: 1 MRMKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVC--PEYGL 58 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +TGIT +K V AE + + T I Y+ D R R Sbjct: 59 VKKHITELTGITQEKVSGQ-RVFAESFKNFVDWIGASETKI--YSWSMSDIKQLRKEC-R 114 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + +W + MR + + + A L + Sbjct: 115 LKVPDFDVNWLD----------MRWVDLQQAFDDRLGLHNSLALKHALGAMGRRF---EG 161 Query: 173 NAHDAKADVYATLALVWLIREKKP 196 H A AD T A++ L+++ + Sbjct: 162 TQHSALADAINTSAVLTLMQDDEK 185 >gi|148998570|ref|ZP_01826010.1| exonuclease [Streptococcus pneumoniae SP11-BS70] gi|225856651|ref|YP_002738162.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031] gi|307067654|ref|YP_003876620.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Streptococcus pneumoniae AP200] gi|147755568|gb|EDK62615.1| exonuclease [Streptococcus pneumoniae SP11-BS70] gi|225725179|gb|ACO21031.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031] gi|301794129|emb|CBW36537.1| putative exonuclease [Streptococcus pneumoniae INV104] gi|306409191|gb|ADM84618.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease [Streptococcus pneumoniae AP200] gi|332204995|gb|EGJ19060.1| exonuclease family protein [Streptococcus pneumoniae GA47901] Length = 196 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|71908614|ref|YP_286201.1| oligoribonuclease [Dechloromonas aromatica RCB] gi|71848235|gb|AAZ47731.1| Exonuclease [Dechloromonas aromatica RCB] Length = 184 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N+ V D E G + DR + A V + + E + + + +D+ L Sbjct: 6 NNLVWLDMEMTGLNPDGDRIIEMAMVVTNSELEMVAESPSWVVHQSDEIL 55 >gi|254252896|ref|ZP_04946214.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa AUO158] gi|124895505|gb|EAY69385.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa AUO158] Length = 207 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51 >gi|194397817|ref|YP_002037629.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54] gi|225861122|ref|YP_002742631.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae Taiwan19F-14] gi|298231026|ref|ZP_06964707.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19F] gi|298253983|ref|ZP_06977569.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502997|ref|YP_003724937.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae TCH8431/19A] gi|194357484|gb|ACF55932.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae G54] gi|225727595|gb|ACO23446.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae Taiwan19F-14] gi|298238592|gb|ADI69723.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae TCH8431/19A] gi|327389271|gb|EGE87616.1| exonuclease family protein [Streptococcus pneumoniae GA04375] Length = 196 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQKHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D + Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAE-------YGLDY 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 S +D R+ G + KLQ +A G + +H++ D Sbjct: 108 SQQYKVDLYDEAFERRSS------------DLHGIANLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|213584484|ref|ZP_03366310.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 57 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 45/57 (78%) Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128 G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW + NSR Sbjct: 1 GENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 57 >gi|301162194|emb|CBW21739.1| putative exonuclease [Bacteroides fragilis 638R] Length = 175 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%) Query: 1 MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F D+ET G + G+ E + P ++Y + Sbjct: 1 MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANML 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GITP A + + ++ +N +FD +N D Sbjct: 55 VHGITPGMTESLPGFHA-IYPEVKKRLQ---GKVVVAHNEQFDRNVLKNTMRMYGLDYDE 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S R + G L GIE H+A + Sbjct: 111 LSLPERWE-----CTCRIYRSL------------GYKPVNLSACCEREGIEL-KHHEALS 152 Query: 180 DVYATLALVWLIREKKPK 197 D L EK Sbjct: 153 DARGCAKLYLNFLEKYRP 170 >gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4] gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens DM4] Length = 297 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 47/183 (25%), Gaps = 29/183 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + D + + E +P P + + GI P Sbjct: 4 VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ESRLIRP-PQLRFSPGNIRVHGILP 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E I +F + ++ +N FD W Sbjct: 59 ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ PD L +A GI + HDA D +A Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154 Query: 186 ALV 188 + Sbjct: 155 EIA 157 >gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56] Length = 197 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 46/170 (27%), Gaps = 29/170 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + ++ ++ E +P D + I Sbjct: 1 MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E H F + +N FD +R D YR S Sbjct: 55 GIRPEDVEDAPE-FPEVMDEFHDDFR---GATMIAHNAAFDFSV-----WRASLDLYRQS 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + + WP S +L +A G Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGPAF 141 >gi|220934255|ref|YP_002513154.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. HL-EbGR7] gi|219995565|gb|ACL72167.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. HL-EbGR7] Length = 181 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 13/38 (34%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 ++ D E G D D + A + D+ + Sbjct: 5 PDNLAWIDLEMTGLDTDNDYIIEIATLVTDKDLNILAE 42 >gi|227502443|ref|ZP_03932492.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|306835006|ref|ZP_07468054.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] gi|227076812|gb|EEI14775.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|304569114|gb|EFM44631.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] Length = 479 Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 9/111 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +T G + R V D + + KP D P + G+T Sbjct: 113 YVALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVL-KPDIDAGPH----HLHGLT 167 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + + + + + + ++I + + R Sbjct: 168 VADIEQAPA-FSRILKSLDKLI---DGRTLVVHDIPYTWGFIVAEARRAMM 214 >gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str. Langeland] gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. Langeland] gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. 230613] Length = 309 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD R+ ++ Sbjct: 57 RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|332305263|ref|YP_004433114.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172592|gb|AEE21846.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 181 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G +D + A + D + V +D+ L + + Sbjct: 6 QNLVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDEVLNNMNQWCIDT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + ++ + + E +F + N I D + Sbjct: 66 HGKSGLTERCRKSTIDEQTAVAETIRFLEKYVPKGASPLCGNTIGQDRRFMVKYMPELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|156551267|ref|XP_001600928.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis] Length = 224 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 7/123 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDY-LPDPEAVFITG 62 V D E G DV +R + A + D I + + +P + + G Sbjct: 46 IVWIDMEMSGLDVDKNRILEIACLITDENLNVISDEFQAVLYQPDTELDTMNDWCQNNHG 105 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 T + E + F C + N++ D + R + Sbjct: 106 KTGLIDACKKSAETEDAVDINLLYFMMKYIPKGKCPLAGNSVYVDRLFLRKYMPVSNDYI 165 Query: 118 YRW 120 + Sbjct: 166 HYR 168 >gi|253563502|ref|ZP_04840959.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|251947278|gb|EES87560.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] Length = 175 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%) Query: 1 MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F D+ET G + G+ E + P ++Y + Sbjct: 1 MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANML 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GITP A + + ++ +N +FD +N D Sbjct: 55 VHGITPGMTESLPGFHA-IYPEVKKRLQ---GNVVVAHNEQFDRNVLKNSMRMYGLDYDE 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S R + G L GIE H+A + Sbjct: 111 LSLPERWE-----CTCRIYRSL------------GYKPVNLSACCEREGIEL-KHHEALS 152 Query: 180 DVYATLALVWLIREKKPK 197 D L EK Sbjct: 153 DARGCAKLYLNFLEKYRP 170 >gi|152965734|ref|YP_001361518.1| exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] gi|151360251|gb|ABS03254.1| Exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] Length = 218 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 33/136 (24%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M+ V +D ET G + + A VR + E FF P ++ +P A+ Sbjct: 1 MSKRPLVFFDTETTGLGPGR-QAWEIALVRREPDG--TERPLEFF-LPIEEVRAEPGALD 56 Query: 60 I--------TGI-----------TPQKALRDGVVEAE-------FSRRIHQFFSVP--NT 91 I GI T K + + + + Sbjct: 57 IGRYYARHPHGIAISTIPAQPPFTTPKPADAPRPVPQEPGPVVLAVPKAARLLAQWTSGA 116 Query: 92 CIIGYNNIRFDDYYSR 107 I+G N R Sbjct: 117 TIVGANPAFDVQILER 132 >gi|241950803|ref|XP_002418124.1| Oligoribonuclease, mitochondrial precursor, putative; exonuclease, putative [Candida dubliniensis CD36] gi|223641463|emb|CAX43424.1| Oligoribonuclease, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 257 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 23/136 (16%) Query: 2 TNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51 V D E G DV D + + + + ++ + K + Sbjct: 46 KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDEKGYESTIYYPKSRLDKMNEWC 105 Query: 52 LPDPEAVFITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + G + +K L + VE E + I ++ T ++ N++ D + Sbjct: 106 I------ETHGKSGLTEKILANPDRKLSAVEDELLQYIKKYVPEIRTGLLAGNSVHMDRF 159 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 160 FMMKEFPKVIDHLHYR 175 >gi|291409160|ref|XP_002720873.1| PREDICTED: histone mRNA 3 end-specific exonuclease-like [Oryctolagus cuniculus] Length = 344 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 125 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEANTQLSDFCINL 184 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113 TGIT + + + R++ + CI+ + + R Sbjct: 185 TGITQDQVDKAD-TFPQVLRKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLSRL 243 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 244 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 293 >gi|237798271|ref|ZP_04586732.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021123|gb|EGI01180.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 178 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + A+ + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMADAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|6323088|ref|NP_013160.1| Rex2p [Saccharomyces cerevisiae S288c] gi|1730818|sp|P54964|ORN_YEAST RecName: Full=Oligoribonuclease, mitochondrial; Flags: Precursor gi|1181280|emb|CAA64306.1| Ynt20 protein [Saccharomyces cerevisiae] gi|1360404|emb|CAA97590.1| YNT20 [Saccharomyces cerevisiae] gi|285813481|tpg|DAA09377.1| TPA: Rex2p [Saccharomyces cerevisiae S288c] Length = 269 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 170 FMVREFPKVIDHLFYR 185 >gi|289811457|ref|ZP_06542086.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 70 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 7/62 (11%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A V V + D P+A+ I IT Sbjct: 4 IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56 Query: 67 KA 68 Sbjct: 57 MV 58 >gi|170781928|ref|YP_001710260.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus] gi|169156496|emb|CAQ01646.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 206 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 11/128 (8%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60 + V D E G D+A+D + A V D +++ P L + + Sbjct: 6 DRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDAGFTIVINPDPAALANMGEFVTEM 65 Query: 61 T---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 G+ + + GV E + Q I N I D + R Sbjct: 66 HRSSGLLDE--IPAGVSLADAEFAVLEYLLQHVPNGGKAPIAGNTIGTDRAFLAKYMPRV 123 Query: 114 FYDSYRWS 121 + S Sbjct: 124 DAHLHYRS 131 >gi|76810706|ref|YP_334337.1| oligoribonuclease [Burkholderia pseudomallei 1710b] gi|76580159|gb|ABA49634.1| oligoribonuclease [Burkholderia pseudomallei 1710b] Length = 229 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 47 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 79 >gi|302672277|ref|YP_003832237.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] gi|302396750|gb|ADL35655.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] Length = 311 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 48/298 (16%) Query: 2 TNHFVIYDYETF---------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 +++I+D E G+ + + V+++ + EKI +P Sbjct: 1 MKNYIIFDLEWNQGDAPVVENGKTLNF-EIVEIGAVKLNEKKEKIGEF-SRLIRPQVFKQ 58 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 + +T + G + + +F + D + Sbjct: 59 MHRITGKLIHLTMEDL-ESGEPFTDVAD---EFLKWCGEDPQFCSWGPLDLTEFQRNLDF 114 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 R I + + + DDG + L + ++ Sbjct: 115 FGMPLLSD---------------RPIAFYDVQKLYSIAFDDGKSRKALSTVVDEMQMDKD 159 Query: 173 -NAHDAKADVYATLALVWLI---------------REKKPKLFEYLYDYRNKNQLRKLID 216 H A AD T + + + + + + +D K R+ Sbjct: 160 IPFHRALADAEYTARIFRKLGDKVLQRVSFDTYVTPKTRKQEIKITFDNYFKYISREFDS 219 Query: 217 IQNMTPLVHVSGMFGA--SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQ 272 +++ + + R+ + + ++ SV C L G M+ + + Sbjct: 220 KEDILENIEIMSTKCYLCHRNIRRKVKWFTPNSKHYYSVAYCELHGFMKSKVRIKKAE 277 >gi|224120530|ref|XP_002330965.1| predicted protein [Populus trichocarpa] gi|222872757|gb|EEF09888.1| predicted protein [Populus trichocarpa] Length = 219 Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56 V D E G + +DR + A + D I ++ + + Sbjct: 41 LVWIDLEMTGLNTEVDRILEIACIITDGYLTKSVEGPDLVIHQSKECLDRMGEWCQSHHA 100 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108 A +T K L + E + +++ +F +T +I N++ D + + Sbjct: 101 ASGLTN----KVLGSKITERDAEKQVIEFVKRHVGTHTPLIAGNSVYVDFLFLKK 151 >gi|326204418|ref|ZP_08194276.1| Exonuclease RNase T and DNA polymerase III [Clostridium papyrosolvens DSM 2782] gi|325985450|gb|EGD46288.1| Exonuclease RNase T and DNA polymerase III [Clostridium papyrosolvens DSM 2782] Length = 187 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 22/199 (11%) Query: 5 FVIYDYETFGRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 + D E D + V + +I V +P + + Sbjct: 2 LIFVDLEATCWDKNEKNKRPHAEIIEIGAVVTGQDLIEISKFSV-VIRPEIEPVLSDYCK 60 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYD 116 +TG++ G+ ++Q+ + Y +D + + R+ Y Sbjct: 61 ELTGLSQTDVEN-GMEFNRAISHLYQWILKYENMENTVLYTWGDYDIFLLKRSLRRHKYK 119 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175 + D L ++ + ++S L G H H Sbjct: 120 NK-----------DFLSIIHKGGLINLQEQFMKFTKLPSSSCNLVKALQIIGENYHGKMH 168 Query: 176 DAKADVYATLALVWLIREK 194 + D + L + Sbjct: 169 RSVDDAENMIKLYRYLNNN 187 >gi|212526340|ref|XP_002143327.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224] gi|210072725|gb|EEA26812.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224] Length = 189 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 38/133 (28%), Gaps = 25/133 (18%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF--- 59 V D E G D D+ Q D Q + +E P + P+A Sbjct: 10 LVWVDCEMTGLDPETDQILQICCFITDAQLQLLE--------PNGFEIVVHQPKAKLDAM 61 Query: 60 ------ITGIT--PQKAL----RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 G + Q L ++ I ++ T ++ N+I D + Sbjct: 62 SQWCIDTHGKSGLTQAVLASTTDAATASSQLLAYIKRYVPEQRTALLAGNSIHADRAFLA 121 Query: 108 NIFYRNFYDSYRW 120 Y + + Sbjct: 122 KPPYSPILEWLHY 134 >gi|303240238|ref|ZP_07326757.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] gi|302592148|gb|EFL61877.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] Length = 223 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 12/126 (9%), Positives = 36/126 (28%), Gaps = 18/126 (14%) Query: 2 TNHFVIYDYE-TFG-----------RDVALD----RPAQFAGVRVDRQWEKIESTEVFFC 45 +++ D E + G + Q + ++ ++ I+ F Sbjct: 34 KKCYIVLDLEFSTGYKYVNKDYAKTLFPKYEKRPAEIIQIGAIMLNHNYKIIDKFNKFIT 93 Query: 46 KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 P + +TG+ + + E ++ + G++N + Sbjct: 94 -PCIYQKINKYVTELTGLNDENLKN-NISFVECMDSFEKWIGKKEYILCGWSNSDQKVFE 151 Query: 106 SRNIFY 111 ++ Sbjct: 152 DNFKYH 157 >gi|53712466|ref|YP_098458.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46] gi|60680667|ref|YP_210811.1| putative exonuclease [Bacteroides fragilis NCTC 9343] gi|265762628|ref|ZP_06091196.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|52215331|dbj|BAD47924.1| probable DNA polymerase III epsilon chain [Bacteroides fragilis YCH46] gi|60492101|emb|CAH06864.1| putative exonuclease [Bacteroides fragilis NCTC 9343] gi|263255236|gb|EEZ26582.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] Length = 175 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%) Query: 1 MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M F D+ET G + G+ E + P ++Y + Sbjct: 1 MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANML 54 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GITP A + + ++ +N +FD +N D Sbjct: 55 VHGITPGMTESLPGFHA-IYPEVKKRLQ---GNVVVAHNEQFDRNVLKNTMRMYGLDYDE 110 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 S R + G L GIE H+A + Sbjct: 111 LSLPERWE-----CTCRIYRSL------------GYKPVNLSACCEREGIEL-KHHEALS 152 Query: 180 DVYATLALVWLIREKKPK 197 D L EK Sbjct: 153 DARGCAKLYLNFLEKYRP 170 >gi|198283559|ref|YP_002219880.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666066|ref|YP_002426185.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248080|gb|ACH83673.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518279|gb|ACK78865.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 220 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 33/217 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET GR + A + V +E E F + + A+ + I Sbjct: 4 LIFDTETTGR--VEPELIEAAWLAV-SDLRTLEVEEQFVQRYRPAKPIEMGAMAVHHILE 60 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + L F +T + ++I +D Sbjct: 61 EDLLESPPA--------SSFRLPEDTGYLVGHSIDYDWGVIG---------------KPD 97 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT- 184 R + R ++ Q + + NAH A ADV Sbjct: 98 VKRICTYAMTRKLWPEVDSHSQSALMYHFSKDKRKTR------DNLKNAHSALADVKFCR 151 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + L +I +P +E L+++ + ++ + + Sbjct: 152 ILLNKVILSVRPNSWEDLWEFSERARIPETMPFGKHK 188 >gi|326427354|gb|EGD72924.1| oligoribonuclease [Salpingoeca sp. ATCC 50818] Length = 238 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 7/122 (5%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D E G DV+ +R + A + D + S+ + L + T T Sbjct: 64 VWVDLEMSGLDVSRERILEMAMIITDADLNVVASSGTVVLHQPEHILESMDEWNTTHHTQ 123 Query: 66 ----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 ++ + + E + ++ + C + +++ D + R + Sbjct: 124 SGLVERVRQSKLREWDVEDQMLKLLHEHCPEKRCPLAGSSVHVDRLFLLKYMPRFTDYLH 183 Query: 119 RW 120 Sbjct: 184 YR 185 >gi|298345320|ref|YP_003718007.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063] gi|304390877|ref|ZP_07372829.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235381|gb|ADI66513.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063] gi|304325760|gb|EFL93006.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 212 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 19/128 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------- 56 V D E G D+ +D + A + D + ++S KP+ + Sbjct: 16 VWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMGEFVREMHTK 75 Query: 57 ----AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 A TG++ ++A R + + + P + N++ D + Sbjct: 76 SGLLAKLDTGLSVEEAGR------QVLDYVKRLVPEPGKAQLAGNSVHSDKAFLAKQMPE 129 Query: 113 NFYDSYRW 120 + Sbjct: 130 LINWLHYR 137 >gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri 100-23] gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri 100-23] Length = 178 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 30/196 (15%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +F+ D+ET G+ + + + R + + I G Sbjct: 2 NFIAMDFETANGKRYSACSL----ALTIVRNGQIADEFYTL---INPHTKFFWRNTQIHG 54 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + E I+QF++ P+ +I +NN N RN + Y Sbjct: 55 IHERDVQNAP-DFPEVWEHINQFYT-PDKLVIAHNNRFD------NSVLRNTLEHYNIE- 105 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + LD + + G T++KL + A I+ + H+A D Sbjct: 106 ---VPAYQTLDTVASSRQL----------IPGLTNYKLNTVCDALNIDLHHHHNALDDAQ 152 Query: 183 ATLALVWLIREKKPKL 198 A ++ + Sbjct: 153 ACANILLYQSKHFTPQ 168 >gi|157283974|ref|YP_001468242.1| exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] gi|151363116|gb|ABS06118.1| Exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] Length = 203 Score = 50.2 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 14/126 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D E+ D + + A D + F DP A + GI Sbjct: 50 VLLDTESTALD---GQLVEIAI--TDVHGAPL-----FSSLVRPTTPVDPGARAVHGIGD 99 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + + ++ + + N RFD R R D + Sbjct: 100 EELQDAPDLLM-VAPQLRAALA---GRHVIAYNARFDRGLLRREGERIGVDLLSSTRWGC 155 Query: 126 NSRWDL 131 Sbjct: 156 GMHCYT 161 >gi|323308092|gb|EGA61345.1| Rex2p [Saccharomyces cerevisiae FostersO] Length = 229 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 13 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 72 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 73 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 129 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 130 FMVREFPKVIDHLFYR 145 >gi|315655740|ref|ZP_07908638.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333] gi|315489804|gb|EFU79431.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333] Length = 212 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 19/128 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------- 56 V D E G D+ +D + A + D + ++S KP+ + Sbjct: 16 VWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMGEFVREMHTK 75 Query: 57 ----AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 A TG++ ++A R + + + P + N++ D + Sbjct: 76 SGLLAKLDTGLSVEEAGR------QVLEYVKRLVPEPGKAQLAGNSVHSDKAFLAKQMPE 129 Query: 113 NFYDSYRW 120 + Sbjct: 130 LINWLHYR 137 >gi|219882682|ref|YP_002477846.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] gi|219861688|gb|ACL42029.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 197 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 28/185 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGI 63 FV D+E + Q V+V + T F P + + GI Sbjct: 7 FVAIDFEL--ANAKHSSICQIGLVKVRDG--VLGKTHTHFVMPPAGQQNFGHRQIAVHGI 62 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + R+ F + ++ +N + + Sbjct: 63 TRRMIDGADGWDL-MLPRLEAF--TGDLPLVAHNVVAERSMIRQTTEAIGLTPPPFT--- 116 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 F G S++L L + G+ + HDA D A Sbjct: 117 -----------------FYCTQRAAQLHLPGQESYRLNMLVESLGLPPLQHHDAGEDAAA 159 Query: 184 TLALV 188 L Sbjct: 160 AAHLA 164 >gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-03] gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-07] gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-22] gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-26] gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-32] gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-12] Length = 337 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 7/119 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAV 58 N + D ET G D+ + + + + + + P A Sbjct: 124 KNKPLFVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPIAE 182 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 I G + E E I F + +I +N+ FD + RN F D Sbjct: 183 GIHGYNDWTLRHQNLFE-EKMEHILSFIEESD--VIVAHNVNFDMKFIRNSFANAKIDI 238 >gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO 3283-01] gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-01] gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-01-42C] Length = 343 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 7/119 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAV 58 N + D ET G D+ + + + + + + P A Sbjct: 130 KNKPLFVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPIAE 188 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 I G + E E I F + +I +N+ FD + RN F D Sbjct: 189 GIHGYNDWTLRHQNLFE-EKMEHILSFIEESD--VIVAHNVNFDMKFIRNSFANAKIDI 244 >gi|51013461|gb|AAT93024.1| YLR059C [Saccharomyces cerevisiae] Length = 269 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 170 FMVREFPKVIDRLFYR 185 >gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] Length = 309 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLIK--PKEMRFMPINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD R+ ++ Sbjct: 57 RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|167720628|ref|ZP_02403864.1| oligoribonuclease [Burkholderia pseudomallei DM98] gi|167903697|ref|ZP_02490902.1| oligoribonuclease [Burkholderia pseudomallei NCTC 13177] gi|254181122|ref|ZP_04887720.1| oligoribonuclease [Burkholderia pseudomallei 1655] gi|184211661|gb|EDU08704.1| oligoribonuclease [Burkholderia pseudomallei 1655] Length = 201 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51 >gi|301787585|ref|XP_002929208.1| PREDICTED: 3'-5' exoribonuclease 1-like [Ailuropoda melanoleuca] Length = 349 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + CI+ + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298 >gi|190406098|gb|EDV09365.1| RNA exonuclease [Saccharomyces cerevisiae RM11-1a] Length = 269 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 170 FMVREFPKVIDHLFYR 185 >gi|50287235|ref|XP_446047.1| hypothetical protein [Candida glabrata CBS 138] gi|49525354|emb|CAG58971.1| unnamed protein product [Candida glabrata] Length = 250 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 13/132 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-------TEVFFCKPADDYLPD 54 T V D E G D D + + D + + +++ V C D Sbjct: 37 TKPLVWIDCEMTGLDHVNDEIIEICCIVTDGELKNLDTETKEQCYESVVHCPKEKLDAMD 96 Query: 55 PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRN 108 + G + K L + + + + I+ N++ D + Sbjct: 97 QWCLDHHGSSGLMDKVLASKKTKEQVEEELLNYLQKWIPEKRVGILAGNSVHMDRLFMLK 156 Query: 109 IFYRNFYDSYRW 120 F R + Sbjct: 157 DFPRVVQYLHYR 168 >gi|221133715|ref|ZP_03560020.1| oligoribonuclease [Glaciecola sp. HTCC2999] Length = 191 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 32/126 (25%), Gaps = 7/126 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + + D E G D + A + D Q + V DD L + + Sbjct: 16 QNLIWIDMEMTGLDPEECVVLEIATIVTDAQLNILAEGPVIAIYQPDDVLANMNEWCIET 75 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115 G T Q+ E F T + N I D + Sbjct: 76 HGKTGLTQRCRESKYSVEEAQAETIAFLQAYVPERTSPLCGNTIGQDRRFMVKYMPELEA 135 Query: 116 DSYRWS 121 + S Sbjct: 136 YCHYRS 141 >gi|53720090|ref|YP_109076.1| oligoribonuclease [Burkholderia pseudomallei K96243] gi|126451823|ref|YP_001067153.1| oligoribonuclease [Burkholderia pseudomallei 1106a] gi|134277998|ref|ZP_01764713.1| oligoribonuclease [Burkholderia pseudomallei 305] gi|167816819|ref|ZP_02448499.1| oligoribonuclease [Burkholderia pseudomallei 91] gi|167846725|ref|ZP_02472233.1| oligoribonuclease [Burkholderia pseudomallei B7210] gi|217420377|ref|ZP_03451882.1| oligoribonuclease [Burkholderia pseudomallei 576] gi|237813261|ref|YP_002897712.1| oligoribonuclease [Burkholderia pseudomallei MSHR346] gi|242316244|ref|ZP_04815260.1| oligoribonuclease [Burkholderia pseudomallei 1106b] gi|59798009|sp|Q63S41|ORN_BURPS RecName: Full=Oligoribonuclease gi|166215755|sp|A3NXT2|ORN_BURP0 RecName: Full=Oligoribonuclease gi|52210504|emb|CAH36487.1| oligoribonuclease [Burkholderia pseudomallei K96243] gi|126225465|gb|ABN89005.1| oligoribonuclease [Burkholderia pseudomallei 1106a] gi|134251648|gb|EBA51727.1| oligoribonuclease [Burkholderia pseudomallei 305] gi|217395789|gb|EEC35806.1| oligoribonuclease [Burkholderia pseudomallei 576] gi|237503180|gb|ACQ95498.1| oligoribonuclease [Burkholderia pseudomallei MSHR346] gi|242139483|gb|EES25885.1| oligoribonuclease [Burkholderia pseudomallei 1106b] Length = 201 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51 >gi|134295109|ref|YP_001118844.1| oligoribonuclease [Burkholderia vietnamiensis G4] gi|166215757|sp|A4JCK6|ORN_BURVG RecName: Full=Oligoribonuclease gi|134138266|gb|ABO54009.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia vietnamiensis G4] Length = 200 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51 >gi|313895399|ref|ZP_07828956.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|312976294|gb|EFR41752.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] Length = 219 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 27/199 (13%) Query: 6 VIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 ++ D E G++ + VR+ ++ + + + + C + L Sbjct: 4 IVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVC--PEYGLVKKHI 61 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGIT ++ V AE + + T I Y+ D R R Sbjct: 62 TELTGITQEQVSGQ-RVFAESFKNFVDWIGASETKI--YSWSMSDIKQLRKEC-RLKVPD 117 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +W + MR + + + A L + H A Sbjct: 118 FDVNWLD----------MRWVDLQQAFDDRLGLHNSLALKHALGAMGRRF---EGTQHSA 164 Query: 178 KADVYATLALVWLIREKKP 196 AD T A++ L+++ + Sbjct: 165 LADAINTSAVLTLMQDDEK 183 >gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 218 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 57/250 (22%), Gaps = 51/250 (20%) Query: 22 PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 + A V V + D P+A+ I IT +E + Sbjct: 2 IVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEAMVADKPWIE-DVIP- 55 Query: 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141 + + +N F R W + M+ Sbjct: 56 ----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---------ICTMKLSRRL 92 Query: 142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201 WP + ++ H A D Y T LI + + Sbjct: 93 ------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA--ALLIDIMRTTGW-- 142 Query: 202 LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-WHPRYKDSVIGCNLSG 260 + + P + + F + ++ VA P Y + + Sbjct: 143 ---------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNM 191 Query: 261 DMRVFQDLDS 270 + L Sbjct: 192 SPELRLTLKH 201 >gi|254195663|ref|ZP_04902090.1| oligoribonuclease [Burkholderia pseudomallei S13] gi|169652409|gb|EDS85102.1| oligoribonuclease [Burkholderia pseudomallei S13] Length = 203 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 21 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 53 >gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana] Length = 495 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 29/201 (14%) Query: 5 FVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +D ET +F + V R+ E++ S +P D L Sbjct: 13 IAFFDLET--AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTL-VRPTDLSLISTLTKR 69 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +GIT L +E + +++ G+N IRFD R F Sbjct: 70 RSGITRDGVLSA-HTFSEIADKVYDIL--HGRIWAGHNIIRFDCVRIREAFAEIGLSPPE 126 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D L ++ + A K+ LA G+ AH + Sbjct: 127 -----PKATIDSLSLLSQKF------------GKRAGDMKMASLATYFGLG-DQAHRSLD 168 Query: 180 DVYATLALVWLIREKKPKLFE 200 DV L + + Sbjct: 169 DVRMNLEESSVPDILTDMSWF 189 >gi|320096134|ref|ZP_08027731.1| oligoribonuclease [Actinomyces sp. oral taxon 178 str. F0338] gi|319976935|gb|EFW08681.1| oligoribonuclease [Actinomyces sp. oral taxon 178 str. F0338] Length = 200 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 23/120 (19%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D E G DV D + A V ++ P D L P A + G++ Sbjct: 2 VWIDCEMTGLDVGADALIEVAVVITGADLTVVD--------PGIDVLIAPPAAALEGMSD 53 Query: 66 ---QKALRDGVVE------------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + G+++ I +F ++ N++ D + Sbjct: 54 FVRDMHTKSGLLDDLKDGVTMEEATERVLSYIKRFVPEAGKALLAGNSVGTDKMFLEANM 113 >gi|114623463|ref|XP_001136735.1| PREDICTED: hypothetical protein LOC463978 isoform 1 [Pan troglodytes] Length = 349 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298 >gi|318606038|emb|CBY27536.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica Y11] Length = 220 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A + V + + + D +A+ I IT Sbjct: 3 FRVIDTETCGL---EGGIVEIASIDVMDGA--LSNPMSDLV--SPDRPISLDAMVIHHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + + +N R W Sbjct: 56 EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R +Y P + + +++ H A D Y T Sbjct: 98 ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 145 AALLQRIMRD 154 >gi|307172626|gb|EFN63985.1| hypothetical protein EAG_09598 [Camponotus floridanus] Length = 292 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 66/249 (26%), Gaps = 33/249 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I+D ET G Q A ++++ +F + IT ++ Sbjct: 4 IIFDLETTGFGPN-AEIIQIAAKYHNQEFNV----YIFPSNSIPTIV-----SNITNLSI 53 Query: 66 QKALRDGVVEAE-----------FSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112 + E E F + ++ +N RFD Sbjct: 54 EDGQLILDSENEYRRLDTESPRMACELFISFLKNISHDIILVAHNGERFDAPLIVKTMNA 113 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIE 170 S G + + R AF + G F L LA Sbjct: 114 VGLLKEFGSIVKGFTDSLSIFKDRKELAFR--------KKKGKGGFSLSALANDYLEPDS 165 Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230 AH+A DV L+ K+ +L + + + ++ + M Sbjct: 166 TRGAHNAVVDVQMLDNLLKKFAIKETELISCVVPFSSIVNADRIRKEKEEKKNAMFVIME 225 Query: 231 GASRSNTAL 239 S + Sbjct: 226 PFGISKNMI 234 >gi|53724753|ref|YP_102207.1| oligoribonuclease [Burkholderia mallei ATCC 23344] gi|67642879|ref|ZP_00441630.1| oligoribonuclease [Burkholderia mallei GB8 horse 4] gi|121598453|ref|YP_993837.1| oligoribonuclease [Burkholderia mallei SAVP1] gi|124385187|ref|YP_001026898.1| oligoribonuclease [Burkholderia mallei NCTC 10229] gi|126441737|ref|YP_001059867.1| oligoribonuclease [Burkholderia pseudomallei 668] gi|126450125|ref|YP_001079814.1| oligoribonuclease [Burkholderia mallei NCTC 10247] gi|166999773|ref|ZP_02265607.1| oligoribonuclease [Burkholderia mallei PRL-20] gi|167739617|ref|ZP_02412391.1| oligoribonuclease [Burkholderia pseudomallei 14] gi|167825224|ref|ZP_02456695.1| oligoribonuclease [Burkholderia pseudomallei 9] gi|167895311|ref|ZP_02482713.1| oligoribonuclease [Burkholderia pseudomallei 7894] gi|167911947|ref|ZP_02499038.1| oligoribonuclease [Burkholderia pseudomallei 112] gi|167919939|ref|ZP_02507030.1| oligoribonuclease [Burkholderia pseudomallei BCC215] gi|226197920|ref|ZP_03793494.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9] gi|254176983|ref|ZP_04883640.1| oligoribonuclease [Burkholderia mallei ATCC 10399] gi|254208872|ref|ZP_04915220.1| oligoribonuclease [Burkholderia mallei JHU] gi|254259729|ref|ZP_04950783.1| oligoribonuclease [Burkholderia pseudomallei 1710a] gi|254295656|ref|ZP_04963114.1| oligoribonuclease [Burkholderia pseudomallei 406e] gi|59798006|sp|Q62M61|ORN_BURMA RecName: Full=Oligoribonuclease gi|166215752|sp|A3MHS8|ORN_BURM7 RecName: Full=Oligoribonuclease gi|166215753|sp|A2S4M9|ORN_BURM9 RecName: Full=Oligoribonuclease gi|166215754|sp|A1V6I4|ORN_BURMS RecName: Full=Oligoribonuclease gi|166215756|sp|A3NBZ6|ORN_BURP6 RecName: Full=Oligoribonuclease gi|52428176|gb|AAU48769.1| oligoribonuclease [Burkholderia mallei ATCC 23344] gi|121227263|gb|ABM49781.1| oligoribonuclease [Burkholderia mallei SAVP1] gi|124293207|gb|ABN02476.1| oligoribonuclease [Burkholderia mallei NCTC 10229] gi|126221230|gb|ABN84736.1| oligoribonuclease [Burkholderia pseudomallei 668] gi|126242995|gb|ABO06088.1| oligoribonuclease [Burkholderia mallei NCTC 10247] gi|147750748|gb|EDK57817.1| oligoribonuclease [Burkholderia mallei JHU] gi|157805488|gb|EDO82658.1| oligoribonuclease [Burkholderia pseudomallei 406e] gi|160698024|gb|EDP87994.1| oligoribonuclease [Burkholderia mallei ATCC 10399] gi|225930108|gb|EEH26121.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9] gi|238524093|gb|EEP87528.1| oligoribonuclease [Burkholderia mallei GB8 horse 4] gi|243064261|gb|EES46447.1| oligoribonuclease [Burkholderia mallei PRL-20] gi|254218418|gb|EET07802.1| oligoribonuclease [Burkholderia pseudomallei 1710a] Length = 201 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51 >gi|324509601|gb|ADY44034.1| Oligoribonuclease [Ascaris suum] Length = 198 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 46/178 (25%), Gaps = 17/178 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---- 57 + + D E G DV + A + + + +D L + + Sbjct: 22 SERLIWIDCEMTGLDVRQHTLVEIACIVTEADLSVVAEGPDIVISQPEDVLANMSSWCRS 81 Query: 58 -VFITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113 G+ QK + ++ F P C + N++ D + Sbjct: 82 TFARNGLL-QKIRESNISIKAAESQVLSFLKEHTDPGKCPLAGNSVHMDRVFIER----- 135 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + R + ++ + S L D+ + H Sbjct: 136 ---YMPNLVKHLHYRIVDVSTIKEVARRWYPLEFASSPQKLQKHRALDDIRESIQELH 190 >gi|255596951|ref|XP_002536656.1| conserved hypothetical protein [Ricinus communis] gi|223518960|gb|EEF25726.1| conserved hypothetical protein [Ricinus communis] Length = 216 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 7/125 (5%) Query: 6 VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 I+D E G + A V S ++ + P+AV ITGIT Sbjct: 22 TIFDTEGTGFRGPNFG-ITEVACFTVAPNAT---SGVLYGHLINPEETITPQAVKITGIT 77 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + ++ Q + I G+N+ +D + ++ + ++ + Sbjct: 78 QAMVSGAELWSLRYAALFKQM--AASHWIGGFNSATYDLHAVIDMNAKYGMPFEKFEYSF 135 Query: 125 GNSRW 129 Sbjct: 136 DVRTL 140 >gi|157370180|ref|YP_001478169.1| exodeoxyribonuclease X [Serratia proteamaculans 568] gi|157321944|gb|ABV41041.1| Exonuclease RNase T and DNA polymerase III [Serratia proteamaculans 568] Length = 222 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 59/216 (27%), Gaps = 38/216 (17%) Query: 7 IYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET G + A V +D +I + + D EA+ I IT Sbjct: 5 VIDTETCGL---EGGVVEVASVDLIDG---QIANPMSDL--ISPDRPIGIEAMAIHHITE 56 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 Q + I ++ + + +N F R +W Sbjct: 57 QMVEGKPR----IAVAIGRY--QGSPYYVAHN----------AAFDRGVLPEMHGAW--- 97 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + M+ PD + + L + H A D Y T Sbjct: 98 ------ICTMKLARNLYPDI----KYGNQYLRYALNLDVQLPQDTTLYPHRALYDCYVTA 147 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 AL+ I + E + ++ L K Sbjct: 148 ALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKYR 183 >gi|289642810|ref|ZP_06474947.1| Exonuclease RNase T and DNA polymerase III [Frankia symbiont of Datisca glomerata] gi|289507379|gb|EFD28341.1| Exonuclease RNase T and DNA polymerase III [Frankia symbiont of Datisca glomerata] Length = 270 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 12/150 (8%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58 + V D E G D A D + A + D + + + L +AV Sbjct: 1 MDRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILGGGVDVVVSAPETALAGMDAVVQQ 60 Query: 59 --FITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +G+T + + E + + + N+I D + Y Sbjct: 61 MHATSGLT-EAVRASTLTVADAERQVLDYVRDQIPDAGKAPLCGNSIATDRNFL--ARYM 117 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 DSY S L A+ Sbjct: 118 PALDSYLHYRMVDVSTVKELARRWYPRAYY 147 >gi|256271847|gb|EEU06877.1| Rex2p [Saccharomyces cerevisiae JAY291] Length = 269 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNIGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 170 FMVREFPKVIDHLFYR 185 >gi|251778634|ref|ZP_04821554.1| exonuclease family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082949|gb|EES48839.1| exonuclease family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 303 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 19/175 (10%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + ++VD+ +++ + KP+ + +P IT IT ++G+ + Sbjct: 36 ENEIIEIGAIKVDKYMKQVAEMRE-YIKPSVFPVMNPIVTNITKITMDTLQKEGITFKQG 94 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 ++ + +I N Y N+ D Sbjct: 95 MDKLKGMIEDGD--VICSWAKDDIAEIIINSNYHNYTDLSWIK----------------E 136 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193 Y + A K L +++ HDA D TL + I Sbjct: 137 YLDLQEYSTKILGHKKAMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHIYN 191 >gi|256395105|ref|YP_003116669.1| oligoribonuclease [Catenulispora acidiphila DSM 44928] gi|256361331|gb|ACU74828.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 213 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 21/196 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M++ V D E G D+ D + A + D + + P + LP Sbjct: 1 MSDRLVWIDCEMTGLDLDKDALIEVAVLVTDSELNVLGDGVDVVVAPPAEELP------- 53 Query: 61 TGITPQKALRDGVVEAEFSRRIH---QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G+ E R +H ++ I Y R Sbjct: 54 -GLLEGMV--------EVVREMHTASGLLEELSSGIPMAEAQERVLAYVREHVPEAGKAQ 104 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + + + D+ + S + A + N + H A Sbjct: 105 LAGNSVGTDRGFLARDMPELEQHLHYRIVDVSSIKELARRW--YPRVYFNAPKKTGNHRA 162 Query: 178 KADVYATLALVWLIRE 193 D+ ++A + R+ Sbjct: 163 LGDIRDSIAELRYYRD 178 >gi|151941228|gb|EDN59606.1| RNA exonuclease [Saccharomyces cerevisiae YJM789] gi|259148048|emb|CAY81297.1| Rex2p [Saccharomyces cerevisiae EC1118] Length = 269 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 170 FMVREFPKVIDHLFYR 185 >gi|254191977|ref|ZP_04898477.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237] gi|254203892|ref|ZP_04910252.1| oligoribonuclease [Burkholderia mallei FMH] gi|254360071|ref|ZP_04976341.1| oligoribonuclease [Burkholderia mallei 2002721280] gi|147745404|gb|EDK52484.1| oligoribonuclease [Burkholderia mallei FMH] gi|148029311|gb|EDK87216.1| oligoribonuclease [Burkholderia mallei 2002721280] gi|157987799|gb|EDO95564.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237] Length = 203 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 13/33 (39%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36 + V D E G D DR + A V + + Sbjct: 21 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 53 >gi|109899782|ref|YP_663037.1| oligoribonuclease [Pseudoalteromonas atlantica T6c] gi|122971629|sp|Q15Q55|ORN_PSEA6 RecName: Full=Oligoribonuclease gi|109702063|gb|ABG41983.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas atlantica T6c] Length = 181 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G +D + A + D + V +DD L + + Sbjct: 6 QNLVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDDVLNNMNQWCIDT 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + +++ + V E +F + N I D + Sbjct: 66 HGKSGLTERSRKSTVDEQTAVAETIRFLEKYVPKGASPLCGNTIGQDRRFMVKYMPELED 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|256079041|ref|XP_002575799.1| hypothetical protein [Schistosoma mansoni] gi|238661049|emb|CAZ32034.1| expressed protein [Schistosoma mansoni] Length = 301 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 63/241 (26%), Gaps = 38/241 (15%) Query: 4 HFVIYDYETFGR-DVALD-RPAQ---FAGVRVDRQWEKIEST---EVFFCKPADDYLPDP 55 V++D ET G + + A R + Sbjct: 16 TLVLFDVETTGLPSANFNPEITELCMLACSRFSLE-NATAEPRVENKLTLCFNPTRTISS 74 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRN 113 A I+G+ +A I F + ++ C I +N +RFD R Sbjct: 75 IASKISGLNSDNLFHQKDFDASAVDLIQLFLNRLDSPVCFIAHNGLRFDFPLLRAQIMSV 134 Query: 114 FYDSYRWSWDNGNSRW--DLLDVMRAIY-------------AFSPDGIQWPSRDDGATSF 158 Y + D L + R + D P ++ Sbjct: 135 KGKDYNLNDSTNAPIICTDTLPLFREFASQLSGVNSDDSGFISTDDQSSTPVPISHSSPI 194 Query: 159 KLQDLALA------------NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206 KL G +H +AH A+ D A L LV + + Y Sbjct: 195 KLPTTTNKHSFHLGDIHERVFGEKHKHAHSAEGDCRAMLRLVQYLGSPAIDWLQSHYINF 254 Query: 207 N 207 N Sbjct: 255 N 255 >gi|183602109|ref|ZP_02963477.1| hypothetical protein BIFLAC_07642 [Bifidobacterium animalis subsp. lactis HN019] gi|219683021|ref|YP_002469404.1| DNA polymerase III [Bifidobacterium animalis subsp. lactis AD011] gi|241191341|ref|YP_002968735.1| DNA polymerase III subunit epsilon [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196747|ref|YP_002970302.1| DNA polymerase III subunit epsilon [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218602|gb|EDT89245.1| hypothetical protein BIFLAC_07642 [Bifidobacterium animalis subsp. lactis HN019] gi|219620671|gb|ACL28828.1| DNA polymerase III [Bifidobacterium animalis subsp. lactis AD011] gi|240249733|gb|ACS46673.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251301|gb|ACS48240.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794334|gb|ADG33869.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp. lactis V9] Length = 461 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 55/207 (26%), Gaps = 34/207 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVD---------------------RQWEKIESTEVFFCK 46 D ET G D R++ +S F Sbjct: 235 IDIETTGTSAWRDYIIDVGFERMNLQTPAPEGAKARDVYSETDYAADGAYDQSRLSFGVP 294 Query: 47 PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106 + +P +TGI K + + E+ R +N F+ + Sbjct: 295 LRCAEVANPFIAQLTGIDVTKIAGEP-IFDEWPRMQQALLERLMQQPYVAHNATFEHRFF 353 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 + Y ++ NG +LD M + D PS L+ A Sbjct: 354 MANV-----EGYAEAYRNG--EITILDTMPMSRHW--DAGSVPSPGHPHGDNTLEAYAKR 404 Query: 167 NGIEHVNAHD---AKADVYATLALVWL 190 G N+H+ D + L + Sbjct: 405 QGALDGNSHERHLGLEDAHIMLVAMRH 431 >gi|163753213|ref|ZP_02160337.1| hypothetical protein KAOT1_13672 [Kordia algicida OT-1] gi|161326945|gb|EDP98270.1| hypothetical protein KAOT1_13672 [Kordia algicida OT-1] Length = 183 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 7/122 (5%) Query: 2 TNHFVIYDYETF-----G-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 TN ++ D E G + +D KI + + Sbjct: 4 TNKILVVDLEATCWEQDGEYQRNHSEIIEIGICELDVPSGKISKQQGILV-IPEHSEISR 62 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T ITP+ +DGV + + + Y + + + Sbjct: 63 FCTELTSITPEMVAQDGVSFEDAIDILFDEYDSSAYTWASYGAYDRNKVMEECRKKQVDF 122 Query: 116 DS 117 Sbjct: 123 PF 124 >gi|332375352|gb|AEE62817.1| unknown [Dendroctonus ponderosae] Length = 304 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 9/122 (7%) Query: 3 NHFVIYDYETFGR---DVALDRPAQFAGVRVDRQWEKIES----TEVFFCKPADDYLPDP 55 F D ET G ++ + + + + ++ F L Sbjct: 5 KTFAFIDLETTGLPSMELNRTKITELTILAIQADHLELGCLPRVQNKFTLCFNPRKLVSS 64 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRN 113 + ITG++ +++F T C++ +N +FD R ++ Sbjct: 65 GSEEITGLSNSILEHLRPFSDGTVTALNEFLRHNPTPICLVAHNGNKFDYPILRTEINKS 124 Query: 114 FY 115 Sbjct: 125 GQ 126 >gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302] gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302] Length = 162 Score = 50.2 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 29/175 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V + R E + P DY + Sbjct: 1 MKDFAAIDFET--ANNERTSVCSVGLVVI-RDGEIADRFYSLIH-PEPDY-YTYWNTRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E R++ + +N FD+ + +F D +S Sbjct: 56 GLTQADTNHAP-IFPEVWRKVESLIVD---LPLVAHNKAFDESCLKAVFRCYQMDYPDYS 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + WP L +A G + N H Sbjct: 112 F---------------YCTLAQSRRVWPQGH-----HNLNIIAARCGYDFTNHHH 146 >gi|332162002|ref|YP_004298579.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666232|gb|ADZ42876.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 220 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A + V + + + D +A+ I IT Sbjct: 3 FRVIDTETCGL---EGGIVEIASIDVMDGA--LSNPMSDLV--SPDRPISLDAMVIHHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + + +N R W Sbjct: 56 EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R +Y P + + +++ H A D Y T Sbjct: 98 ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 145 AALLQRIMRD 154 >gi|281345321|gb|EFB20905.1| hypothetical protein PANDA_019321 [Ailuropoda melanoleuca] Length = 311 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 92 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 151 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + CI+ + + R Sbjct: 152 TGITQDQVDRAD-TFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRL 210 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 211 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 260 >gi|157874229|ref|XP_001685602.1| DNA polymerase III epsilon subunit-like exonuclease; exonuclease-like protein [Leishmania major] gi|68128674|emb|CAJ08806.1| exonuclease-like protein [Leishmania major strain Friedlin] Length = 188 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 36/177 (20%) Query: 38 ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC----- 92 + +P+D A + GIT + +R + + ++ Sbjct: 13 GRVFHRYVRPSDPRRISAAAAAVHGITWETVQNC-SPWPVVARELVAYMALVGADAPVSA 71 Query: 93 ------------------IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134 + +N FD + + R Y + + R+ L Sbjct: 72 SAQLEAAQLGGQRAVHLPPLVAHNASFDARFLEHHLRRCGYQIFW------HPRYPLTCT 125 Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191 + P S ANG HDA D T L + Sbjct: 126 RQWAQVAYPHLANNLDALCAFLSIDWAADRAANG------HDALTDATLTALLFLQM 176 >gi|332978822|gb|EGK15506.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp. 1501(2011)] Length = 252 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 27/269 (10%), Positives = 69/269 (25%), Gaps = 46/269 (17%) Query: 2 TNHFVIYDYETFGR-DVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++ D ET G D + A +D + + ++ Sbjct: 15 MTTYI-LDTETTGLVDP---HMTEAAYSIIDIVNGQVQVLQAPRDKRFNPLKPISLGSMA 70 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + I + + +F ++G+N +D +N + Sbjct: 71 TSHICDEDVANEP-PHTDF------RLPSSVQYLVGHNI-DYDMQVLKNAGVTHTPKLIC 122 Query: 120 WSWDNGN--SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + D ++ +Y F D + + AH A Sbjct: 123 TKAMSNFLLPTLDSHTLVALLYHFHRDVARR---------------------DAKQAHAA 161 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 D++ T ++ + + + + + + + L + + Sbjct: 162 VYDIFFTQLVLSSLID---------LANSQGHSITDVESLYQFSELARIPTHLSFGKYKG 212 Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQ 266 IA +A +P + + + Sbjct: 213 QAIADIAANPDGAGYLKWLLNQDSVDPYL 241 >gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1] gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1] gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter calcoaceticus PHEA-2] Length = 220 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 31/211 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D Q + P + D ++ G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + +++ ++ +N FD + + R Sbjct: 84 IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART- 142 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + ++D + + L + GIE Sbjct: 143 ----STKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203 AH A D T L I K Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216 >gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] Length = 220 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 31/211 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D Q + P + D ++ G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + +++ ++ +N FD + + R Sbjct: 84 IDPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART- 142 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + ++D + + L + GIE Sbjct: 143 ----STKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203 AH A D T L I K Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216 >gi|182683937|ref|YP_001835684.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CGSP14] gi|182629271|gb|ACB90219.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CGSP14] Length = 208 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 17 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 69 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 70 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 120 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 166 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 167 ARMTARVYESFLESDQ 182 >gi|158255560|dbj|BAF83751.1| unnamed protein product [Homo sapiens] gi|261858590|dbj|BAI45817.1| exoribonuclease 1 [synthetic construct] Length = 349 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298 >gi|116515062|ref|YP_802691.1| ribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285542|sp|Q057V1|RNT_BUCCC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|116256916|gb|ABJ90598.1| exoribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 221 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 58/219 (26%), Gaps = 34/219 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61 V+ D E+ G D + A V + + + F P + E+V Sbjct: 21 VVIDIESAGFQADTDALLEIAIVTLKMNKSGWLKIDDRLH-FHIIPFKGSIIKAESVAFN 79 Query: 62 GITPQKALRDGVVEAEFSRRIHQF------FSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I + + I+ +N FD + R Sbjct: 80 KIDPFNPLRGAVSEKNALKNIFKLVRKKININKCRKGILVAHNANFDHNFLMAASKRVGN 139 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--N 173 + N + D + L GI Sbjct: 140 LN------NPFHPFTTFDTAALSGLIFGQTV-------------LAKACKLAGIPFDTNQ 180 Query: 174 AHDAKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQ 210 AH A D T L + + + + +R K Sbjct: 181 AHSALYDTIQTAYLFCELVNRWKRLGGWPPNSSHRKKTD 219 >gi|154483908|ref|ZP_02026356.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC 27560] gi|149735399|gb|EDM51285.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC 27560] Length = 334 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 49/206 (23%), Gaps = 27/206 (13%) Query: 1 MTNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 M + +++ D E G+ + VRV + I + KP Sbjct: 1 MMD-YIVMDLEWNQNPYGKSHCHTDLTFEIIEIGAVRVSDDRKTIVDSFQQVIKPRVFKK 59 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 + IT T ++ +F + I F I D + Sbjct: 60 LHYKIQEITHFTEEELNDGK----DFRKVIRDFLEWCGDDYIFCTWGSMDLTELQKNMKH 115 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + Y D + N E Sbjct: 116 YNLERVLDF--------------PLFYVDLQKMFSLRYDDGHMKRNLTSAVEYLNIQEEH 161 Query: 173 NAHDAKADVYATLALVWLIREKKPKL 198 H A +D Y T ++ + K K Sbjct: 162 EFHRALSDAYYTARILQSMDYDKYKD 187 >gi|31543184|ref|NP_699163.2| 3'-5' exoribonuclease 1 [Homo sapiens] gi|45476938|sp|Q8IV48|ERI1_HUMAN RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5' exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName: Full=Histone mRNA 3'-end-specific exoribonuclease; AltName: Full=Histone mRNA 3'-exonuclease 1; AltName: Full=Protein 3'hExo; Short=HEXO gi|23271401|gb|AAH35279.1| Exoribonuclease 1 [Homo sapiens] gi|33520761|gb|AAQ21219.1| 3' exoribonuclease [Homo sapiens] gi|119585973|gb|EAW65569.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo sapiens] gi|119585974|gb|EAW65570.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo sapiens] gi|123979876|gb|ABM81767.1| three prime histone mRNA exonuclease 1 [synthetic construct] gi|123994641|gb|ABM84922.1| three prime histone mRNA exonuclease 1 [synthetic construct] Length = 349 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298 >gi|242023941|ref|XP_002432389.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517812|gb|EEB19651.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 289 Score = 50.2 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 10/123 (8%) Query: 3 NHFVIYDYETFGRDV---ALDRPAQFAG----VRVDRQWEKIESTEVFFCKP-ADDYLPD 54 ++YD ET G + + A + + + + Sbjct: 5 KSIIVYDSETTGLPHLESNTTKITELAFMGCEIEHLKNINNLPRVLHKLVLLFNPMKMIL 64 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR 112 P++ ITG+ + + E + + F + + C+I +N +FD + ++ Sbjct: 65 PDSSEITGLENEDLMNIKPFCEEDVQVLIHFINRLPSPVCLIAHNGNKFDFPILQRQLFK 124 Query: 113 NFY 115 Sbjct: 125 LNL 127 >gi|308050117|ref|YP_003913683.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307632307|gb|ADN76609.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 223 Score = 49.8 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 48/179 (26%), Gaps = 20/179 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D E G DV D A V + R + + ++ I GI Sbjct: 38 LALDLELTGLDVRQDAILSIAAVPIIRGRLVLAQSWHQLVSIDGGV---GQSATIHGIHD 94 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + +E + ++ ++ D + + F +F Sbjct: 95 RHLTDAQPLEQ----ALLALLPQLAGRVLVCHHGGLDLGFLQAGFQHHF------GQGLP 144 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 D L + + ++ A S +L G+ H A D A Sbjct: 145 LKVIDTLKIEQRRLERQGTVLK-------ADSLRLAQCRRRYGLPDYPGHHALVDAIAC 196 >gi|292493403|ref|YP_003528842.1| exonuclease RNase T and DNA polymerase III [Nitrosococcus halophilus Nc4] gi|291581998|gb|ADE16455.1| Exonuclease RNase T and DNA polymerase III [Nitrosococcus halophilus Nc4] Length = 183 Score = 49.8 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 13/38 (34%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D D + A V D IE Sbjct: 5 PPNLIWLDLEMSGLDTTQDVILEIATVVTDSDLNIIEE 42 >gi|1019712|gb|AAA98633.1| YNT20 [Saccharomyces cerevisiae] Length = 248 Score = 49.8 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 53 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYETVIHYGPEVMNKM 112 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + P+ + + E E I ++ N ++ N++ D Sbjct: 113 NEWCIEHHGNSESH---PKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 170 FMVREFPKVIDHLFYR 185 >gi|270284496|ref|ZP_05966220.2| exonuclease family protein [Bifidobacterium gallicum DSM 20093] gi|270277009|gb|EFA22863.1| exonuclease family protein [Bifidobacterium gallicum DSM 20093] Length = 249 Score = 49.8 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 9/110 (8%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + +++ D T D + A +RV R + + E + LP A Sbjct: 77 LPDNYCAIDVIT--HSPDSDELIELAAIRV-RSGKPVGQMETLVAQ--SGPLPQDVAAR- 130 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 TG+T + + F N I N R Sbjct: 131 TGLTDAALAGQP-SVKQAIEQFLSFV--GNDTFIAPNVGRMQTELFLAER 177 >gi|254975427|ref|ZP_05271899.1| putative exonuclease [Clostridium difficile QCD-66c26] gi|255092814|ref|ZP_05322292.1| putative exonuclease [Clostridium difficile CIP 107932] gi|255100928|ref|ZP_05329905.1| putative exonuclease [Clostridium difficile QCD-63q42] gi|255314556|ref|ZP_05356139.1| putative exonuclease [Clostridium difficile QCD-76w55] gi|255517231|ref|ZP_05384907.1| putative exonuclease [Clostridium difficile QCD-97b34] gi|255650337|ref|ZP_05397239.1| putative exonuclease [Clostridium difficile QCD-37x79] Length = 324 Score = 49.8 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 21/216 (9%) Query: 6 VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + D+E D ++P GV VD ++ I++ KP + + + Sbjct: 5 LFIDFEFNILDDNKNKPKEYNGAELISIGGVLVDNEFNTIDNYYSL-VKPKYNKILSNKC 63 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T + + +++F + I YN FD + Sbjct: 64 KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------TGLLT 112 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L ++M I F + + L ++ +E H++ Sbjct: 113 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 171 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 +D + + PK + L + NK K Sbjct: 172 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 207 >gi|158339338|ref|YP_001520515.1| exonuclease [Acaryochloris marina MBIC11017] gi|158309579|gb|ABW31196.1| exonuclease [Acaryochloris marina MBIC11017] Length = 159 Score = 49.8 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 8/147 (5%) Query: 5 FVIYDYE-----TFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58 ++I D E TF + V ++ E I+ VF KP Sbjct: 11 YLIVDLEATCCNTFSIPHKETETIEIGAVIIESVGLEIIDEFTVFI-KPIRHPNLTDFCT 69 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +T I + ++F + + R Y Sbjct: 70 ELTTIKQTDLEDAP-TFPQAVGTFKRWFEQYENSVFCSWGDYDKNQLERESKYHKIPYPM 128 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDG 145 N ++ L + Y + Sbjct: 129 GGEHFNLKKQFSLALRTKKHYGMARAL 155 >gi|312199001|ref|YP_004019062.1| exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c] gi|311230337|gb|ADP83192.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c] Length = 238 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 16/152 (10%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD------DYLPD 54 + V D E G D A D + A + D + + ++ P + D Sbjct: 13 MDRLVWIDCEMTGLDPASDVLLEVACLVTDGELNVVGDGVDLVISAPDPVLETMVPVVRD 72 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIF 110 A G+T + + AE +++ + + N+I D + Sbjct: 73 MHATS--GLT-EAVRASTLTVAEAEQQVLAYVRTLVPENRRAPLCGNSIATDRTFL--AR 127 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 Y DSY S L A+ Sbjct: 128 YMPELDSYLHYRMIDVSSVKELARRWYPRAYY 159 >gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] Length = 310 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 8/102 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60 FV D+ET + R D + + ++ P D +P V++ Sbjct: 1 MQEFVSIDFET--ANEQRRSACAVGMARFDAEGKLADTYYTLLH-PHPDVDYFNPVNVWV 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102 GIT ++ + + F I +N+ FD Sbjct: 58 HGITQDDVHDAPQ-WSDVADDVALFI---GERPIVAHNMAFD 95 >gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 248 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 26/180 (14%) Query: 20 DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 DR + V + ++ + + + E + + IT + + A+ + Sbjct: 7 DRIIEIGCVELGEHGLTDKNFHEY---IDPERQMEAEVIRVHKITNEFLVGKPK-FADIA 62 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + +F I +N +FD + + S ++ D +++ +A + Sbjct: 63 DKFIEFVQGARLII---HNAQFDIGFLNEELRKLGKPSMEEIC-GKDNIIDSMELAKAAF 118 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NAHDAKADVYATLALVWLIREKK 195 + L L I+ H A D + ++++++ Sbjct: 119 PQMHN--------------SLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQ 164 >gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 223 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 9/115 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFI 60 V D E G +V +DR + A + D K D L E Sbjct: 44 KQPLVWIDLEMTGLNVEVDRILEIACIITDGNLTKSVEGPDLVVHQTKDCLDKMGEWCQT 103 Query: 61 T----GITPQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRN 108 G+T +K + E E +++ +F ++ N++ D + + Sbjct: 104 HHGDSGLT-KKVRLSTISEREAEQKVIEFVRKHVGSENPLLAGNSVYVDFLFLKK 157 >gi|260683450|ref|YP_003214735.1| putative exonuclease [Clostridium difficile CD196] gi|260687046|ref|YP_003218179.1| putative exonuclease [Clostridium difficile R20291] gi|260209613|emb|CBA63276.1| putative exonuclease [Clostridium difficile CD196] gi|260213062|emb|CBE04429.1| putative exonuclease [Clostridium difficile R20291] Length = 329 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 21/216 (9%) Query: 6 VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + D+E D ++P GV VD ++ I++ KP + + + Sbjct: 10 LFIDFEFNILDDNKNKPKEYNGAELISIGGVLVDNEFNTIDNYYSL-VKPKYNKILSNKC 68 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T + + +++F + I YN FD + Sbjct: 69 KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------TGLLT 117 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L ++M I F + + L ++ +E H++ Sbjct: 118 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 176 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 +D + + PK + L + NK K Sbjct: 177 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 212 >gi|188590221|ref|YP_001919934.1| exonuclease family protein [Clostridium botulinum E3 str. Alaska E43] gi|188500502|gb|ACD53638.1| exonuclease family protein [Clostridium botulinum E3 str. Alaska E43] Length = 303 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 19/175 (10%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + ++VD+ +++ + KP+ + +P IT IT ++G+ + Sbjct: 36 ENEIIEIGAIKVDKYMKQVAEMRE-YIKPSVFPVMNPIVTNITKITMDTLQKEGITFKQG 94 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 ++ + +I N Y N+ D Sbjct: 95 MDKLKGMIEDGD--VICSWAKDDIAEIIINSNYHNYTDLSWIK----------------E 136 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193 Y + A K L +++ HDA D TL + I Sbjct: 137 YLDLQEYSTKILGHKKAMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHIYN 191 >gi|288928364|ref|ZP_06422211.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] gi|288331198|gb|EFC69782.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] Length = 165 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 26/175 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + + V V + + ++S +P +Y + V + Sbjct: 1 MKDFAAIDFET--ANFKRESVCSVGLVLV-EEGKIVDSYYHLI-QPTPNY-FEERCVTVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + I + +N FD+ + F + + Sbjct: 56 GLTTADTNGQP-TFPDVWAEIAPLIRNK---PLVAHNKAFDESCLKAAFAAYDMEYPDYP 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + L R ++ G F+L +A G E H Sbjct: 112 F------YCTLLTARRK-----------LKESGLADFRLPTVASHCGYELDMHHH 149 >gi|15902940|ref|NP_358490.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6] gi|15458502|gb|AAK99700.1| DNA polymerase III, epsilon chain [Streptococcus pneumoniae R6] Length = 208 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 17 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 69 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 70 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 119 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 120 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 166 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 167 ARMTARVYESFLESDQ 182 >gi|116494067|ref|YP_805801.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|191637384|ref|YP_001986550.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|227533296|ref|ZP_03963345.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116104217|gb|ABJ69359.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|190711686|emb|CAQ65692.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|227189092|gb|EEI69159.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327381428|gb|AEA52904.1| DNA polymerase III alpha subunit [Lactobacillus casei LC2W] gi|327384594|gb|AEA56068.1| DNA polymerase III alpha subunit [Lactobacillus casei BD-II] Length = 172 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +VI D E + +R Q + VR+ + F P+ D + Sbjct: 1 MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFI--PSPDKFDQLHIIR-- 53 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 T D + + + + + T I D ++ + Sbjct: 54 --TSNMRYSDYLALPSLQQTVRDYVAWMRTTIDIVGWSIEGDAGRIRETFKKGSHGIPKN 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D+ D++ Y+F+ LQ LA GI H+A D Sbjct: 112 WKF----IDIADIVEKRYSFNATPP-------------LQGLANVLGIPVNRTHNALDDC 154 Query: 182 YATLALVWLIREKKPKLF 199 T ++ + + KLF Sbjct: 155 LRTFGVIKALESRDGKLF 172 >gi|321477963|gb|EFX88921.1| hypothetical protein DAPPUDRAFT_311056 [Daphnia pulex] Length = 349 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 51/193 (26%), Gaps = 21/193 (10%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 +VI DYE +F V ++ ++ E + +C+P + L Sbjct: 116 YVIIDYEATCELLKHSNFKQEIIEFPAVLLNCQKGEVEDEFRS-YCRPVLNPLLTEFCTE 174 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + + E ++ S+ F + Sbjct: 175 LTGITQDDVDKAPLFH-EVLTSFEEWLQK-------------KKLGSKYSFAIVTDGPWD 220 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178 + N + + + + L + G E AH Sbjct: 221 IGYFLKNQCALSKIEFPTYCKYWINIRKTFANFYNTGKMPLSTMIQLIGREFQGRAHSGL 280 Query: 179 ADVYATLALVWLI 191 D +V + Sbjct: 281 DDARNIAFIVQRL 293 >gi|145588712|ref|YP_001155309.1| oligoribonuclease [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047118|gb|ABP33745.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 195 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59 + H + D E G + +R + A + D I + V+ D L +A Sbjct: 16 SEHLIWVDMEMSGLNPETERILEIAIIVTDAHLNTIATAPVWVVHQDDAILDAMDAWNKG 75 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + K + EA F + N I D + + Sbjct: 76 THGRSGLIDKVKTSTLDEAAVEAECIAFLKQYIKAGIAPMCGNTIGQDRRFMAKYMPKLE 135 Query: 115 YDSYRW 120 + Sbjct: 136 AYFHYR 141 >gi|302062272|ref|ZP_07253813.1| oligoribonuclease [Pseudomonas syringae pv. tomato K40] Length = 107 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 4/94 (4%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT 91 G + Q+ + A+ + F + Sbjct: 64 QHGGSGLTQRVRESTISMADAEAQTLAFIKLWVP 97 >gi|296491911|ref|YP_003662378.1| hypothetical protein XNC1_p0095 [Xenorhabdus nematophila ATCC 19061] gi|289176798|emb|CBJ92963.1| Ycg4D (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 181 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 11/107 (10%) Query: 18 ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE 77 D+ + A D + + + P A+ + GI+ + + + Sbjct: 10 ERDQVIELA--VTDIWGDVL-----LNTRLWPTVKISPNAMDVHGISEADLTNEPM-WPQ 61 Query: 78 FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + Q S ++ +N+ FD R W N Sbjct: 62 IAPALAQLLS--GRHVVIFNS-SFDSRLLRQTAGAFGDYMPWWEEKN 105 >gi|156546675|ref|XP_001603963.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis] Length = 185 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 7/121 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPAD-DYLPDPEAVFI 60 + + D E G +V D+ + A + D Q + + ++ + D P Sbjct: 10 DRIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDVFETMIPWCQEQ 69 Query: 61 TGITPQKALRDGVVEAEFS--RRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 T + E + +FF NTC + + + D + + R F Sbjct: 70 HNKTGLIEASRNSIFNEEMAEEELIRFFRKYVPHNTCPLAGSCLYMDRAFLQQHMPRVFE 129 Query: 116 D 116 Sbjct: 130 Y 130 >gi|195573238|ref|XP_002104602.1| GD18354 [Drosophila simulans] gi|194200529|gb|EDX14105.1| GD18354 [Drosophila simulans] Length = 208 Score = 49.8 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 19/129 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPE 56 V D E G D+ D+ + A + D+ I + + + Sbjct: 35 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWC----- 89 Query: 57 AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFY 111 + + + V E S + + C +G N++ D + Sbjct: 90 -MEQHYKSGLIDRCKSSDVKPEEASNLVLSYIEKNIPKGVCPLGGNSVYTDRLFIMKFMP 148 Query: 112 RNFYDSYRW 120 + Sbjct: 149 LVNDYLHYR 157 >gi|156551223|ref|XP_001602293.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis] Length = 188 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFIT 61 N V D E G V DR + A + D + + + D+ E Sbjct: 8 NRIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDEFHQVLHQSDDELARMNEWCQEH 67 Query: 62 GITPQKALRDGVV---EAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 E + ++ F + C + N++ D + R + Sbjct: 68 HTKSGLVEASKKSQEDERSVDKSLYNFLNKYIPKGRCPMAGNSVYMDRLFLRKYMPTSNE 127 Query: 116 DSYRW 120 + Sbjct: 128 YMHYR 132 >gi|241195978|ref|YP_002969533.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis DSM 10140] gi|240250532|gb|ACS47471.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis DSM 10140] Length = 217 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 19/128 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----AVFI- 60 + D E G D+ D + + V D + ++ KP++ + + A+ Sbjct: 18 IWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMHTR 77 Query: 61 --------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G++ Q+A E + + QF ++ N++ D + Sbjct: 78 SGLIDEWENGLSVQEA------ERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPN 131 Query: 113 NFYDSYRW 120 + Sbjct: 132 LMEYLHYR 139 >gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. ATCC 19397] gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. Hall] gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 19397] gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. Hall] Length = 309 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +FV D+ET + + P V V + E +E KP + P + I GI Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + + +I +F+ ++ +N FD R+ ++ Sbjct: 57 RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 ++ + M+ F + +L + G + HDA AD A Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KYHDALADAMA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|330860723|emb|CBX71015.1| exodeoxyribonuclease 10 [Yersinia enterocolitica W22703] Length = 220 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET G + A + V + + + D +A+ I IT Sbjct: 3 FRVIDTETCGL---EGGIVEIASIDVMDGA--LSNPMSDLV--SPDRPISLDAMVIHHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + + +N R W Sbjct: 56 EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +L + R +Y P + + +++ H A D Y T Sbjct: 98 ----ICMLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 145 AALLQRIMRD 154 >gi|302848573|ref|XP_002955818.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f. nagariensis] gi|300258786|gb|EFJ43019.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f. nagariensis] Length = 196 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 35/199 (17%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEA--VF 59 N V D E G D+ D + A + D + ++ DD L + A Sbjct: 17 NPLVWVDLEMTGLDIERDTIIEVACIITDGDLKHEVLGPATAIHA-DDDVLDNMNAWCKE 75 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ V A+ + F S T + N+I D + R Sbjct: 76 HHGKSGLTQRVRETHVTMAQAEDELLAFISGHTTENMAQLAGNSIHVDRMFLLKYMPRVV 135 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D+ + + P A KL A Sbjct: 136 AYLNYR-------IVDVSSIKELARRWY------PKAYKNAPRKKL-------------A 169 Query: 175 HDAKADVYATLALVWLIRE 193 H A +D+ ++ + R+ Sbjct: 170 HTALSDIRESIEELKYYRK 188 >gi|291303079|ref|YP_003514357.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] gi|290572299|gb|ADD45264.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] Length = 226 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 43/178 (24%), Gaps = 26/178 (14%) Query: 21 RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 R A V + + S A + GI+ + A +G A Sbjct: 27 RIVTAAIV----NGDDVASWL-----INPGIDIPAAASNVHGISTEHARANGTEPALALS 77 Query: 81 RIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 I + + + +D + R W + L Sbjct: 78 EIGRALTKAAEEDTPVVVYRAGYDLTLLSHELDRYSLPQVPWERLKVLDPFVLDKKADKF 137 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 L + ++ AH A AD A ++L I ++ Sbjct: 138 R---------------RGKRTLSAVCTHYDVDLSGAHSADADARAAVSLARAIGQRHK 180 >gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus NA1000] gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus NA1000] Length = 209 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 28/166 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D+ET P ++ ++ E + +P + GI P Sbjct: 11 IAIDFET--ASEQRASPCSIGLAWIEDG--EVARVEHHYIRP-PGNRFAAFNMAFHGIRP 65 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + RI ++ +N FD R + Sbjct: 66 EHVADADE-WPDVLERIRPELE---GALVLAHNASFDISVIRRTCEHYDVPAPG------ 115 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 +D L ++ + P+ S KL + G++ Sbjct: 116 ---FDYLCTVQVARSVWPEL----------PSHKLNVVCGHLGVDF 148 >gi|168485945|ref|ZP_02710453.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC1087-00] gi|183571068|gb|EDT91596.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CDC1087-00] Length = 196 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVSLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|126699399|ref|YP_001088296.1| putative exonuclease [Clostridium difficile 630] gi|115250836|emb|CAJ68660.1| putative exonuclease [Clostridium difficile] Length = 329 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 21/216 (9%) Query: 6 VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + D+E D ++P G+ VD ++ I++ KP + + + Sbjct: 10 LFIDFEFNILDDNKNKPKEYNGAELISIGGILVDNEFNTIDNYYSL-VKPKYNKILSNKC 68 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T + + +++F + I YN FD + Sbjct: 69 KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------TGLLT 117 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L ++M I F + + L ++ +E H++ Sbjct: 118 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 176 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 +D + + PK + L + NK K Sbjct: 177 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 212 >gi|73985877|ref|XP_541894.2| PREDICTED: similar to three prime repair exonuclease 1 isoform b [Canis familiaris] Length = 314 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 29/207 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDR---------------QWEKIESTEVFFCKP 47 + D E G + + + + V R + Sbjct: 12 QTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPQGQRPTVPPPPRVVDKLSLCV 71 Query: 48 ADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDD 103 A PEA ITG++ G +A+ + + F C++ +N R+D Sbjct: 72 APGKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLRRQPQPWCLVAHNGDRYDF 131 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + S +G D + ++ + + PS S+ L + Sbjct: 132 PLLQAELAVLGL----ASILDGAFCVDSIAALK-----ALEQAASPSEHGPRKSYSLGSI 182 Query: 164 -ALANGIEHVNAHDAKADVYATLALVW 189 G ++H A+ DV A L++ Sbjct: 183 YTRLYGQAPPDSHMAEGDVLALLSICQ 209 >gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15] gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15] Length = 202 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 28/166 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D+ET P ++ ++ E + +P + GI P Sbjct: 4 IAIDFET--ASEQRASPCSIGLAWIEDG--EVARVEHHYIRP-PGNRFAAFNMAFHGIRP 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + RI ++ +N FD R + Sbjct: 59 EHVADADE-WPDVLERIRPELE---GALVLAHNASFDISVIRRTCEHYDVPAPG------ 108 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 +D L ++ + P+ S KL + G++ Sbjct: 109 ---FDYLCTVQVARSVWPEL----------PSHKLNVVCGHLGVDF 141 >gi|28872064|ref|NP_794683.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|213967916|ref|ZP_03396062.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1] gi|301384436|ref|ZP_07232854.1| oligoribonuclease [Pseudomonas syringae pv. tomato Max13] gi|302132276|ref|ZP_07258266.1| oligoribonuclease [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999378|sp|Q87VI6|ORN_PSESM RecName: Full=Oligoribonuclease gi|28855317|gb|AAO58378.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|213927259|gb|EEB60808.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1] gi|331014602|gb|EGH94658.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 178 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + A+ + F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMADAEAQTLAFIKLWVPERSSPICGNSICQDRRFLYRHMPALE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|289177467|gb|ADC84713.1| Hypothetical protein BIF_00664 [Bifidobacterium animalis subsp. lactis BB-12] Length = 467 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 55/207 (26%), Gaps = 34/207 (16%) Query: 8 YDYETFGRDVALDRPAQFAGVRVD---------------------RQWEKIESTEVFFCK 46 D ET G D R++ +S F Sbjct: 241 IDIETTGTSAWRDYIIDVGFERMNLQTPAPEGAKARDVYSETDYAADGAYDQSRLSFGVP 300 Query: 47 PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106 + +P +TGI K + + E+ R +N F+ + Sbjct: 301 LRCAEVANPFIAQLTGIDVTKIAGEP-IFDEWPRMQQALLERLMQQPYVAHNATFEHRFF 359 Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166 + Y ++ NG +LD M + D PS L+ A Sbjct: 360 MANV-----EGYAEAYRNG--EITILDTMPMSRHW--DAGSVPSPGHPHGDNTLEAYAKR 410 Query: 167 NGIEHVNAHD---AKADVYATLALVWL 190 G N+H+ D + L + Sbjct: 411 QGALDGNSHERHLGLEDAHIMLVAMRH 437 >gi|172041073|ref|YP_001800787.1| oligoribonuclease [Corynebacterium urealyticum DSM 7109] gi|171852377|emb|CAQ05353.1| putative oligoribonuclease [Corynebacterium urealyticum DSM 7109] Length = 209 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 18/188 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 + V D E G D + A + D + ++ +D L D + Sbjct: 11 DRIVWADCEMTGLDPDRHVLVEIAVIVTDAELRPLDEGIDLVIHATEDELAEMDDFVQNM 70 Query: 61 T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRN 113 G+T ++ + AE +++ ++ + N+I D + Y Sbjct: 71 HARSGLT-EQIRESTLSLAEAEQQVLEYVQRYVEVERAAPLAGNSIGTDRRFI--AKYMP 127 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D + S L ++ G + L D+ + Sbjct: 128 KLDEFLHYRMIDVSSIKELARRWYPKVYAG------QPQKGLSHRALADIQESIQELAFY 181 Query: 174 AHDAKADV 181 H D Sbjct: 182 RHAIMVDA 189 >gi|124005323|ref|ZP_01690164.1| exonuclease [Microscilla marina ATCC 23134] gi|123989145|gb|EAY28723.1| exonuclease [Microscilla marina ATCC 23134] Length = 180 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 7/127 (5%) Query: 3 NHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + ++ D E+ G + + D + + ES E KP + P Sbjct: 6 DKILVIDVESTCWQGPPPEGQVSEIIEIGICVFDLKERQRESREGILVKPTQSEV-SPFC 64 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T ITP+ +GV E + RI + + G + RN R Sbjct: 65 TELTTITPELIDAEGVDLKE-ACRILRKKYESQQRVWGSWGDYDRRQFERNCKNRGIGYP 123 Query: 118 YRWSWDN 124 + + N Sbjct: 124 FGTNHLN 130 >gi|322500702|emb|CBZ35779.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 502 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 21/240 (8%) Query: 9 DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E G +F V +D + + +P + +TGIT Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + + + + + ++ R YD + Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344 Query: 121 SWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAH 175 + S ++ + + F + D ++ ++ + +H Sbjct: 345 AAKANTSAEAMICMATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSY-SDHFKCR 403 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 AK T L + + + + D RN ++ + + + HVS + A R Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHRG 458 >gi|310830415|ref|YP_003965516.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] gi|309249882|gb|ADO59448.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] Length = 193 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 33/128 (25%), Gaps = 8/128 (6%) Query: 4 HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +++I D E + + V++D + + F KP + + Sbjct: 2 NYIIVDLEATCWENDRSKRNEIIEIGAVKLDDHLNVVSEFQAF-VKPKLYPQLSEFCMQL 60 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 T I E + F S + + +D ++ + + Sbjct: 61 TSIEQHDVDHAATFE----TVLEDFQSWMGSNYWLCSWGYYDKKQLKSDCDLHKQPTSWL 116 Query: 121 SWDNGNSR 128 Sbjct: 117 RNHISIKH 124 >gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CNPAF512] Length = 224 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 28/166 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D+ET + +D ++ E +P D + I GI P Sbjct: 32 IAIDFET--ANEQRGSACSVGLAWIDEG--RVTRVEERLIRPR-DMRFSGMNIAIHGIRP 86 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E H+ S + +N FD +R D YR S+ Sbjct: 87 EHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQSY--- 134 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + WP S +L +A G+ Sbjct: 135 -------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 169 >gi|323353934|gb|EGA85787.1| Rex2p [Saccharomyces cerevisiae VL3] Length = 229 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 21/136 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47 V D E G D DR + + D + +S K Sbjct: 13 KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKM 72 Query: 48 ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 + + G+T + + + E E I + N ++ N++ D Sbjct: 73 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQXYIPDKNVGVLAGNSVHMDRL 129 Query: 105 YSRNIFYRNFYDSYRW 120 + F + + Sbjct: 130 FMVREFPKVIDHLFYR 145 >gi|262379336|ref|ZP_06072492.1| ribonuclease T [Acinetobacter radioresistens SH164] gi|262298793|gb|EEY86706.1| ribonuclease T [Acinetobacter radioresistens SH164] Length = 219 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 31/211 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D + + I P + D ++ G Sbjct: 23 VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 82 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114 + P A + + IH I+ +N FD + + R+ Sbjct: 83 VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 142 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + + D + + L L GIE Sbjct: 143 -----TKNQNPFHSFSVFDTVTLSALMFGQTV-------------LAKSCLQAGIEFDGK 184 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203 AH A D T L I K Sbjct: 185 EAHSALYDTQKTAELFCYILNKLAPQLLDTL 215 >gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4] gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4] Length = 286 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 47/172 (27%), Gaps = 28/172 (16%) Query: 26 AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85 A VR R E + F + +TGIT + + E F Sbjct: 2 AAVRY-RNHELADQFVSF---VNPERFIPNRITSLTGITNYRVSGAPTI-QEVLPLFLAF 56 Query: 86 FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145 I +N FD + ++ N D + + + Sbjct: 57 L---GEDTIVAHNASFDMRFLKSNANMLRLPEP------KNIVIDTVFLAKRY------- 100 Query: 146 IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197 A + KL+ L GI +H+A D A+ + + Sbjct: 101 ------MKHAPNHKLETLKRMLGIRLS-SHNALDDCITCAAVYQKCAAIQEE 145 >gi|206975330|ref|ZP_03236243.1| exonuclease family protein [Bacillus cereus H3081.97] gi|217960931|ref|YP_002339499.1| exonuclease [Bacillus cereus AH187] gi|206746232|gb|EDZ57626.1| exonuclease family protein [Bacillus cereus H3081.97] gi|217064747|gb|ACJ78997.1| exonuclease family protein [Bacillus cereus AH187] Length = 281 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 29/261 (11%) Query: 1 MTNH--FVIYDYETFGRDVAL----DRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53 M N F+++D E V+++ + I Sbjct: 1 MKNTTHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKIIGEFSEL---VKPGARL 56 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +TGIT + + + R QF ++ + + + D + + + Sbjct: 57 TRHTTKLTGITKKDLMNVEK-FPQIIERFIQFIGE-DSIFVTW--GKEDYRFLSHDCTLH 112 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + R DL + Y + PS L I Sbjct: 113 GVECPCME---KERRIDLQKFVFQAYEELFE--HTPSLQSAVEQLGL--------IWEGK 159 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233 H A AD T ++ ++ + + ++ + + Sbjct: 160 QHRALADAENTANILLKAYSERDIT-KRYKRHGELELVKDGKLTEKAKKKMRKWVFKEMR 218 Query: 234 RSNTALIAPVAWHPRYKDSVI 254 ++ + I Sbjct: 219 KNTERPFVWSTFESSDTWESI 239 >gi|21355135|ref|NP_651184.1| CG10214 [Drosophila melanogaster] gi|11133808|sp|Q9VCI0|ORN_DROME RecName: Full=Probable oligoribonuclease gi|7301049|gb|AAF56185.1| CG10214 [Drosophila melanogaster] gi|16769160|gb|AAL28799.1| LD18757p [Drosophila melanogaster] gi|220942706|gb|ACL83896.1| CG10214-PA [synthetic construct] gi|220952944|gb|ACL89015.1| CG10214-PA [synthetic construct] Length = 211 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 15/115 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPE 56 V D E G D+ D+ + A + D+ I + + + + Sbjct: 38 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHY 97 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRN 108 + + V E S + + C +G N++ D + Sbjct: 98 NSGL----IDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMK 148 >gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium denitrificans ATCC 51888] gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 31/130 (23%), Gaps = 15/130 (11%) Query: 3 NHFVIYDYETFGR------DVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYL 52 + D ET G DR D F Sbjct: 22 QRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIF--NPQQA 79 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 A + G + + + A + + F + +I +N FD + + F Sbjct: 80 SAAGARRVHGYSDRILAQQD-TFASCADMLFPAF--GSADLIVSHNTDFDRPFVESEFAG 136 Query: 113 NFYDSYRWSW 122 SW Sbjct: 137 AGRSLRGKSW 146 >gi|322488730|emb|CBZ23977.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 405 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 17/189 (8%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59 ++ D E + GV +D + +++ F P P Sbjct: 76 IIVVDVEATCEQNARSYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNPRLTPFCTQ 135 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT Q + E + +++ T G I D + + + R Sbjct: 136 LTGIT-QVVVDAAPSITEAIQLFEKWYRE--TIPRGAKTIFAADGPWDFKNFIHEHHILR 192 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + ++ LD+ G+ L N H+ Sbjct: 193 DHVSFPSIFYEYLDIRTTFAHRLNHGVPIKLDAM---------LRKMNLRFDGRPHNGFD 243 Query: 180 DVYATLALV 188 D Y L Sbjct: 244 DAYNIARLA 252 >gi|269469132|gb|EEZ80677.1| oligoribonuclease [uncultured SUP05 cluster bacterium] Length = 180 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 12/36 (33%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D + A V D+ + Sbjct: 6 NLIWIDLEMTGLIPEKDVIIEIATVVTDKDLNVLAE 41 >gi|255320382|ref|ZP_05361566.1| ribonuclease T [Acinetobacter radioresistens SK82] gi|255302577|gb|EET81810.1| ribonuclease T [Acinetobacter radioresistens SK82] Length = 215 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 31/211 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D + + I P + D ++ G Sbjct: 19 VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 78 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114 + P A + + IH I+ +N FD + + R+ Sbjct: 79 VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 138 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + + D + + L L GIE Sbjct: 139 -----TKNQNPFHSFSVFDTVTLSALMFGQTV-------------LAKSCLQAGIEFDGK 180 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203 AH A D T L I K Sbjct: 181 EAHSALYDTQKTAELFCYILNKLAPQLLDTL 211 >gi|218680718|ref|ZP_03528615.1| dephospho-CoA kinase protein [Rhizobium etli CIAT 894] Length = 238 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 6 VIYDYETFGRDVALDRPAQFAGV 28 +I+D ET G D DR + G+ Sbjct: 206 IIFDTETTGLDNRADRIIEIGGI 228 >gi|320321892|gb|EFW77988.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320331003|gb|EFW86977.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4] gi|330872242|gb|EGH06391.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 178 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTINMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|288923313|ref|ZP_06417448.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] gi|288345349|gb|EFC79743.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] Length = 210 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 14/151 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53 + V D E G D D + A + D + ++ + + Sbjct: 13 MDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELNVLDEGIDLVLGAPDAALDQMLPVVKE 72 Query: 54 DPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111 EA +T T +A V EAE I +F + N+I D + Y Sbjct: 73 MHEASGLT--TAVRASELKVDEAEKQLLAYIRRFVPDSRKAPLCGNSIATDRTFI--ARY 128 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D + S L A+ Sbjct: 129 LPQLDEFLHYRMIDVSSIKELARRWYPRAYY 159 >gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] Length = 297 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 49/183 (26%), Gaps = 29/183 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + D + + ++ E +P P + + GI P Sbjct: 4 VAIDFET--ANERRDSACAVGLAWI--EGGRVARRESRLIRP-PQLRFSPGNIRVHGILP 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E I +F + ++ +N FD W Sbjct: 59 ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ PD L +A GI + HDA D +A Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154 Query: 186 ALV 188 + Sbjct: 155 EIA 157 >gi|149235658|ref|XP_001523707.1| oligoribonuclease, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] gi|146452686|gb|EDK46942.1| oligoribonuclease, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] Length = 269 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 12/116 (10%) Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAVFI 60 V D E G DV DR + + D E + + E P + E Sbjct: 77 LVWVDCEMTGLDVLGEDRIIEICCIVTDENLEVLGNGDYYESTIYYPQETLDKMDEWCQT 136 Query: 61 T----GITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRN 108 T G+ + + + +F P I+ N++ D ++ Sbjct: 137 THGQLGLIQRILDNPDRTLEKVQAELLEFLKKYISGPKIGIMAGNSVHMDKFFMMK 192 >gi|118595061|ref|ZP_01552408.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181] gi|118440839|gb|EAV47466.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181] Length = 220 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 46/192 (23%) Query: 6 VIYDYETFGRDVALDRP-AQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFIT 61 +I+D ET GR+ D + A + + I + E F + + A+ Sbjct: 5 LIFDTETTGRN---DPVLIEAAWIEIRD----IANFELGTSFCERFNPGKPIELGALATH 57 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 I ++ + F++P C + +NI +D Sbjct: 58 HIYDEELVDCPP---------ASSFALPTPCEYLIGHNIDYDWNVVS------------- 95 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 R L + R + WP+ D + S + L N NAH A+A Sbjct: 96 --QPSLKRICTLALARKV---------WPNIDAYSQSALVYYLDRNNAKSILKNAHSAEA 144 Query: 180 DVYATLALVWLI 191 DV +++ + Sbjct: 145 DVMICASILKQL 156 >gi|321476303|gb|EFX87264.1| hypothetical protein DAPPUDRAFT_312570 [Daphnia pulex] Length = 252 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 27/199 (13%) Query: 3 NHFVIYDYETFGRDVALD---RPAQFAG------VRVDRQWEKIESTEVFFCK-PADDYL 52 N +V D ET G D R + + ++ K+ Sbjct: 43 NSYVFLDLETTGFITTEDPICRITELSMWGIEREQFLNCNGSKMPRITNRLNMCVDPSKE 102 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIF 110 P A + + + + + + F + C+I + +FD ++ Sbjct: 103 IHPMAATKSKLDNLNLSHQSPFDEDVANTVLSFLNRLKKPMCMIAHYGFKFDFPVLKSEI 162 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGI 169 D + D L V R + + S+ L+++ Sbjct: 163 ANVGKD-----FSEDVFCADSLPVFRTCQSLAQGVPY---------SYTLENVYRRIYNN 208 Query: 170 EHVNAHDAKADVYATLALV 188 + H+A+ADV Sbjct: 209 QPEVMHEAEADVKMLFWAA 227 >gi|73977197|ref|XP_532608.2| PREDICTED: similar to prion protein interacting protein 1 isoform 1 [Canis familiaris] Length = 219 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 13/176 (7%) Query: 20 DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 +F ++++ + +IEST + +P P +TGI + Sbjct: 45 GEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVL 103 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 R+ ++ + + + D G ++ L V Sbjct: 104 ERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFK 152 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREK 194 + + L D+ ++H H D ++ + + Sbjct: 153 QWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYQ 208 >gi|21672814|ref|NP_660881.1| oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008877|sp|Q8K909|ORN_BUCAP RecName: Full=Oligoribonuclease gi|21623465|gb|AAM68092.1| hypothetical oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 184 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLP-DPEAVFI 60 + + D E G + + R + A V D + I + + + + D I Sbjct: 6 ENLIWIDLEMTGLNSEIHRIIEIATVITDTKLNIISEGPVIAIHQKEEHIVIMDEWNTKI 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNFY 115 ++ + E++ + F I N++ D + Sbjct: 66 HKKNGLIKRVQKSIYNESKAESKTIFFLKKWVPIQSSPICGNSVYQDRKFLARYMPNLEN 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39] gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39] Length = 243 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + V +D + ST F +P + + A+ TG Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 63 I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I P LR V E + I++ + + II +N FD + R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173 + D + L G+E N Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199 Query: 174 AHDAKADVYATLALVWLIREK 194 AH A D T L I + Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220 >gi|331083424|ref|ZP_08332536.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404117|gb|EGG83665.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium 6_1_63FAA] Length = 320 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 38/345 (11%), Positives = 96/345 (27%), Gaps = 35/345 (10%) Query: 4 HFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G++ + V++D ++S + KP + Sbjct: 2 NYIVFDLEWNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEII-KPVVYHRLHF 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I GIT + +G+ ++ F T + D + Y Sbjct: 61 RTKEILGITSNRL-EEGISFKAAVKK---FLEWCGTDVKFCTWGSADLVELQRNLK---Y 113 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + +D+ + IY ++ T+ L+ ++ + Sbjct: 114 YRMLFLLKGPVFYYDVQKLFGLIY------------ENEKTTRSLEYAIDFLKMDKGDTF 161 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H A D + T ++ I E K + Y+N + + F + Sbjct: 162 HQALNDAHYTAEILKKIPENFMKRNYSIDCYQNPKN-----KDSEIYTVFKDYSKFISRE 216 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 ++ A + + + + ++ + IK+ Sbjct: 217 FSSKEEAMMDKEVTKTQCFLCKRTAKKKIRWFSVNPKSHLCLAYCPEHGCFKGKAR-IKK 275 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339 K ++ + + + + + R Q + Sbjct: 276 TDEGKYYVVKTLKRIDEAEASEIREKREALRKKRRMKRHQEKKKK 320 >gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 201 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 46/189 (24%), Gaps = 26/189 (13%) Query: 15 RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74 R A+ V + + F A + G+ + Sbjct: 1 LSPRYHRLAEVGCVEI-AGGRITGNY--FHSYINPCQRMTRGAQAVHGLKDEFLATQP-T 56 Query: 75 EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134 ++R+ F ++G+N ++ + F Sbjct: 57 FGAIAQRLLYFL--CGAVLVGHNLTFDLNFLDAGLVSAGFMP------------------ 96 Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYATLALVWLIR 192 A D ++ ++ F L DL G+ H A D R Sbjct: 97 AARYCAGVIDTMRHLAQRGSRRRFSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVAAR 156 Query: 193 EKKPKLFEY 201 P L ++ Sbjct: 157 RTHPSLGDH 165 >gi|238881963|gb|EEQ45601.1| oligoribonuclease, mitochondrial precursor [Candida albicans WO-1] Length = 237 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 17/133 (12%) Query: 2 TNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51 V D E G DV D + + + + ++ + K + Sbjct: 26 KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDENGYESTIYYPKSRLDKMNEWC 85 Query: 52 LPDPEAVFITGITPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + G+T + VVE E I ++ T ++ N++ D ++ Sbjct: 86 IETHGKS---GLTDKILANPDRKLSVVEDELLEYIKKYVPEVRTGLLAGNSVHMDRFFMM 142 Query: 108 NIFYRNFYDSYRW 120 F + + Sbjct: 143 KEFPKVIDHLHYR 155 >gi|255306817|ref|ZP_05350988.1| putative exonuclease [Clostridium difficile ATCC 43255] Length = 315 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 21/216 (9%) Query: 6 VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + D+E D ++P G+ VD ++ I++ KP + + + Sbjct: 5 LFIDFEFNILDDNKNKPKEYNGAELISIGGILVDNEFNTIDNYYSL-VKPKYNKILSNKC 63 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T + + +++F + I YN FD + Sbjct: 64 KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------AGLLT 112 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L ++M I F + + L ++ ++ H++ Sbjct: 113 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVKGDIKHNS 171 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 +D + + PK + L + NK K Sbjct: 172 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 207 >gi|158296273|ref|XP_557337.3| AGAP006662-PA [Anopheles gambiae str. PEST] gi|157016432|gb|EAL40132.3| AGAP006662-PA [Anopheles gambiae str. PEST] Length = 339 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 13/122 (10%) Query: 3 NHFVIYDYETFGRDVALD---RPAQFAGV------RVDRQWEKIESTEVFFCKPADDYLP 53 FV +D ET G + + + V ++ E T + Sbjct: 5 KSFVFFDLETTGLPEYEHFRTKITELSMVACAREHLLEASTEPPRVTHKLSLCFNPHRMI 64 Query: 54 DPEAVFITGITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + TG+ ++ +A E + + P C++ +N RFD + Sbjct: 65 TLGSSQATGLYNDLLEKEAKFDANAGEMVKLFLERLQKP-VCLVAHNGQRFDFILLKQHL 123 Query: 111 YR 112 R Sbjct: 124 LR 125 >gi|156372383|ref|XP_001629017.1| predicted protein [Nematostella vectensis] gi|156216008|gb|EDO36954.1| predicted protein [Nematostella vectensis] Length = 222 Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 57/204 (27%), Gaps = 19/204 (9%) Query: 5 FVIYDYETFG-RDVALD---RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59 V+ D+E+ ++ + +F V V E + F P + Sbjct: 8 LVVIDFESTCWKEKRRNSAPEIIEFPAVVVSTSTGEIVSEFRQF-VSPTEHSRLSEFCTK 66 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGY----NNIRFDDYYSRNIFY 111 +TGIT + G+ ++ + N D Sbjct: 67 LTGITQDQV-DAGIPIGACLVLFSRWLKELQQLKGIRFMSDITRPNGRPIDQAKWAMSVT 125 Query: 112 RNFYDS-YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 + +D + R + +R+ ++ SR + L+DL + Sbjct: 126 WSDWDIGICLKNECLRKRHLVPPELRSWIDLKATYKKFYSRKPDGLAGALKDLGIRFD-- 183 Query: 171 HVNAHDAKADVYATLALVWLIREK 194 H D T AL W + Sbjct: 184 -GREHSGLDDARNTAALAWRMVRD 206 >gi|195449894|ref|XP_002072273.1| GK22765 [Drosophila willistoni] gi|194168358|gb|EDW83259.1| GK22765 [Drosophila willistoni] Length = 190 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 16/131 (12%) Query: 2 TNHF-VIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYL 52 N + V D E G D+ D+ + + + D+ I + + + + + Sbjct: 13 KNTYMVWMDLEMTGLDIQKDKILEVSCLITDKDLNIQSNGLSFAINHPQEVYEQMNEWCI 72 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109 A + + V I + TC++ N++ D + Sbjct: 73 KQHYASGL----VDSCKKSTVTPEAAEDLILTYLKQNIPEKTCVLAGNSVYMDRLFLYKY 128 Query: 110 FYRNFYDSYRW 120 + Sbjct: 129 MPIVNKYLHYR 139 >gi|46105698|ref|XP_380564.1| hypothetical protein FG00388.1 [Gibberella zeae PH-1] Length = 215 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 9/127 (7%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-ADDYLPDPEAVF 59 + V D E G D D + + E ++ P + D Sbjct: 19 DPLVWIDCEMTGLDQDNDEIIEIYCIITTGNLEILDEEGFHAIIHFPQSRLDQMDEWCTK 78 Query: 60 IT---GITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 G+T E I +F ++ N++ D + R Y+ Sbjct: 79 THAESGLTAAVLESTTTPEQAADALYEYITRFIPERKRGLLAGNSVHCDRAFLRREPYKR 138 Query: 114 FYDSYRW 120 Sbjct: 139 VMRHLHH 145 >gi|73979366|ref|XP_539997.2| PREDICTED: similar to histone mRNA 3 end-specific exonuclease [Canis familiaris] Length = 349 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPELNTQLSDFCINL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + CI+ + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298 >gi|313203394|ref|YP_004042051.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312442710|gb|ADQ79066.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 182 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 50/190 (26%), Gaps = 30/190 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET P + +V+ I ++ + KPA +P + GI Sbjct: 2 NFTAIDFET--AHAEF--PCEIGLTKVENG--IITKSQSWLIKPACFPYMNPWNQRVHGI 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + E + + + +N FD R Sbjct: 56 SSADVSSA-STFEELWGELKLWIEN---DYLVAHNAAFDMRVLR---------------- 95 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 S D+ + S L ++ + I N H A D A Sbjct: 96 ---SVLAYYDLAVPRTEYFCSVSISRKTWKHLPSHSLGVVSQFHNISF-NHHRAGDDARA 151 Query: 184 TLALVWLIRE 193 + + Sbjct: 152 CAIIALKAFD 161 >gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] Length = 223 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 31/205 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV 58 ++ D ET G + + E I+ K + P+ ++V Sbjct: 1 MERLIVLDTETTGIKPSEGH-----RIIEIGCIEIIDRQITKNNKYHEYIQPNRNVGDSV 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I GIT + + F + +F + + +N FD + + + Sbjct: 56 RIHGITDKFLTKKPK----FKEVVEEFLAYIKETTLIIHNAPFDLGFLNHELKLIGINER 111 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176 + + D L++ + + L L I+ H Sbjct: 112 IE---DKCTIIDSLELSKQQRPGTL--------------HNLDSLCRRFKIDSSARTVHG 154 Query: 177 AKADVYATLALVWLIREKKPKLFEY 201 A DV + + + LF Sbjct: 155 ALLDVQILAQVYLAMTGGQSTLFSN 179 >gi|255655809|ref|ZP_05401218.1| putative exonuclease [Clostridium difficile QCD-23m63] gi|296450953|ref|ZP_06892700.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296879081|ref|ZP_06903077.1| exonuclease superfamily protein [Clostridium difficile NAP07] gi|296260171|gb|EFH07019.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296429954|gb|EFH15805.1| exonuclease superfamily protein [Clostridium difficile NAP07] Length = 324 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 21/211 (9%) Query: 6 VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 + D+E D ++P GV VD ++ I++ KP + + + Sbjct: 5 LFIDFEFNILDDNKNKPKEYNGTELISIGGVLVDNEFNTIDNYYSL-VKPRYNKILSNKC 63 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +T + + +++F + I YN FD + Sbjct: 64 KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDII---------GLLT 112 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + +L ++M I F + + L ++ +E H++ Sbjct: 113 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 171 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK 208 +D + + PK + L + NK Sbjct: 172 LSDAMDLMNVCKCFFFNYPKNIDILEELYNK 202 >gi|116666689|pdb|1ZBH|A Chain A, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease gi|116666690|pdb|1ZBH|B Chain B, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease gi|116666691|pdb|1ZBH|C Chain C, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease gi|116666692|pdb|1ZBH|D Chain D, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease Length = 299 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 80 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 139 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + R Sbjct: 140 TGITQDQVDRAD-TFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 198 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG + L D Sbjct: 199 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDD 248 >gi|289665345|ref|ZP_06486926.1| putative PAS/PAC sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 196 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 22/191 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D + V + + + + + + + + A Sbjct: 10 VVVDTETTGVDPFVHDILSVGLVSMAKDYSE-----ELYVQLPSNPIWSTFAE--NNFLK 62 Query: 66 --QKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + ++ + + R I +F I +N FD + + + + Sbjct: 63 FSSQWKKNAMPALDVVRSIERFVEACGNGREVIFVGHNFSFDRMFLQKLTKVAGVEKI-- 120 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + D ++R+ S G+ +FK D+ I+ H A AD Sbjct: 121 -RGVSHRSIDTFTLLRS---LSICGLVPEEAQTSDGAFKYFDI----KIQGDARHTALAD 172 Query: 181 VYATLALVWLI 191 AT L + Sbjct: 173 ALATKILFKKL 183 >gi|73536576|ref|XP_847712.1| hypothetical protein [Leishmania major strain Friedlin] gi|321438625|emb|CBZ12384.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 502 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 21/240 (8%) Query: 9 DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E G +F V +D + + +P + +TGIT Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285 Query: 65 PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS---- 117 + + + P + + ++ R F Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCWMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344 Query: 118 --YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + + D ++ ++ + +H Sbjct: 345 AAKANTSAEAMVCMATDGPWDMRRFMHQCSVLRDGVDFPPVCYRYINVRHSY-SDHFKCR 403 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 AK T L + + + + D RN ++ + + + HVS + A R Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTITYAHRG 458 >gi|255307423|ref|ZP_05351594.1| putative exonuclease [Clostridium difficile ATCC 43255] Length = 342 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/325 (9%), Positives = 83/325 (25%), Gaps = 12/325 (3%) Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 V V D + + I+ + +P + P +T I+ ++ Sbjct: 21 VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78 Query: 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136 E R+ ++ + + Y D N R+ + + N + + Sbjct: 79 EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 138 Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 I ++ L N +AHD D Y L I Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 189 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256 + + + + N ++ + + Sbjct: 190 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 248 Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 + +++ + + + +++ +++V+ + +L + + +E Sbjct: 249 IIDVNIQNLEIMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDVLEDLMLYRMNEYEY 308 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341 L + ++ Sbjct: 309 KYEIKNIIKMFDEDLDNEKIYINKC 333 >gi|330960097|gb|EGH60357.1| oligoribonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 178 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELSTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE + +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NYFHYR 129 >gi|330946499|gb|EGH47535.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B] Length = 137 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%) Query: 2 TNHFVIYDYE-TF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E T G VA + V++ +++ E F +PA L Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96 +T I Q ++ + ++ S I+G+ Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW 97 >gi|325087498|gb|EGC40808.1| oligoribonuclease [Ajellomyces capsulatus H88] Length = 189 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 21/131 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55 V D E G + D+ Q D I E D + Sbjct: 10 LVWIDCEMTGLNPRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMDDWCI--- 66 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNI 109 G + + + + T ++ N++ D + Sbjct: 67 ---KTHGQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRRGTGLLAGNSVHADKEFLACK 123 Query: 110 FYRNFYDSYRW 120 Y + Sbjct: 124 PYSMILKWLHY 134 >gi|29566899|ref|NP_818464.1| gp164 [Mycobacterium phage Omega] gi|29425624|gb|AAN12806.1| gp164 [Mycobacterium phage Omega] Length = 178 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 39/206 (18%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAV 58 M+ ++ D ET G + A V V+ ++ + V + + +PEA+ Sbjct: 1 MSRQIIVVDTETGGLGPNAP-VLEIAAVNVETGEEFRVV--PFVTAAQLSSC---EPEAL 54 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I E R N FD + R+ D Sbjct: 55 AINR------------FYE-RRVFADMLEDAEG-----NKNAFD-------WLRSMLDGN 89 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD------DGATSFKLQDLALANGIEHV 172 ++ N L+ + + + S L + G+E+ Sbjct: 90 VFAGSNPAFDAPLIAKLLNGEPWHHRKLALESYAAGVLGLPLDELPGLNKVCEILGVENE 149 Query: 173 NAHDAKADVYATLALVWLIREKKPKL 198 + H A D AT ++R + Sbjct: 150 DPHSALGDARATAECFRILRGMAEQN 175 >gi|330879830|gb|EGH13979.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 143 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 7/120 (5%) Query: 2 TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 H+++ D E G VA + V++ +++ E F +PA + Sbjct: 1 MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116 +T I Q ++ + ++ S ++G+ + +D + + D Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHRLD 118 >gi|313242699|emb|CBY39490.1| unnamed protein product [Oikopleura dioica] Length = 481 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 54/216 (25%), Gaps = 36/216 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES----------TEVFFCKPADDYLP 53 + YD ET G + A +++ K E VF+ D Sbjct: 192 TVIYYDTETTG-KARDCSICEIAC--WAQEFNKFECPSVYNPDHRGPNVFYELMFPDRKF 248 Query: 54 DPEAVFITGITPQ---------KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFD 102 A + GI + K + A+ ++ ++ + ++ + +D Sbjct: 249 SAGASKVNGIKKEGKTGLKVRGKVHKHVQSPAKAMGKMCEWLESFSKKVVLVAHFGTGYD 308 Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 R G S + + + ++ Sbjct: 309 HPILIRQMARAGLAERFQKSIFGFSD------------TMIPLKRTMPKQRLKLTVLGEE 356 Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 + AH A DV+ L + + Sbjct: 357 FIPGWNMYEGKAHTALFDVWCMLMVFRMQNVTFSPY 392 >gi|260588886|ref|ZP_05854799.1| exonuclease family protein [Blautia hansenii DSM 20583] gi|260540665|gb|EEX21234.1| exonuclease family protein [Blautia hansenii DSM 20583] Length = 320 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 38/345 (11%), Positives = 96/345 (27%), Gaps = 35/345 (10%) Query: 4 HFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G++ + V++D ++S + KP + Sbjct: 2 NYIVFDLEWNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEII-KPVVYHRLHF 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I GIT + +G+ ++ F T + D + Y Sbjct: 61 RTKEILGITSNRL-EEGIPFKAAVKK---FLEWCGTDVKFCTWGSADLVELQRNLK---Y 113 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + +D+ + IY ++ T+ L+ ++ + Sbjct: 114 YRMLFLLKGPVFYYDVQKLFGLIY------------ENEKTTRSLEYAIDFLKMDKGDTF 161 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H A D + T ++ I E K + Y+N + + F + Sbjct: 162 HQALNDAHYTAEILKKIPENFMKRNYSIDCYQNPKN-----KDSEIYTVFKDYSKFISRE 216 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 ++ A + + + + ++ + IK+ Sbjct: 217 FSSKEEAMMDKEVTKTQCFLCKRTAKKKIRWFSVNPKSHLCLAYCPEHGYFKGKAR-IKK 275 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339 K ++ + + + + + R Q + Sbjct: 276 TDEGKYYVVKTLKRIDEAEASEIREKREALRKKRRMKRHQEKKKK 320 >gi|321471838|gb|EFX82810.1| hypothetical protein DAPPUDRAFT_195366 [Daphnia pulex] Length = 228 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 52/208 (25%), Gaps = 24/208 (11%) Query: 3 NHFVIYDYETF-----GRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPE 56 ++ D+E G + +F + V+ +E + + + KP P Sbjct: 35 ERLLVLDFEATCDSQRGT-IRPQEIIEFPVLNVETNGFETVGTFH-RYVKPQVHPTLTPF 92 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGI E H++ + N Sbjct: 93 CTSLTGIIQDMVEDA-APLKEVMEDFHKWLLSQHLL----NKEFAVVTCGDWDLKELLPR 147 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVNAH 175 + + + + + F+ +P S KL H Sbjct: 148 QFLHTGQVVPAYFKS--WINIKMIFAESTGVYPRNLPHMLSHAKLVH--------FGRLH 197 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLY 203 D + A+V + + + + Sbjct: 198 SGIDDCHNIAAVVRFLGRRSSQWRLTSF 225 >gi|134105090|pdb|2OA8|A Chain A, Crystal Structure Of Mtrex1 With Ssdna gi|134105091|pdb|2OA8|B Chain B, Crystal Structure Of Mtrex1 With Ssdna Length = 233 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 33/222 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FFC 45 + D E G + + + V R +E+T + Sbjct: 9 QTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLSL 66 Query: 46 KPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRF 101 A P A ITG++ + G + + + F C++ +N R+ Sbjct: 67 CIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRY 126 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + R S +G D + ++ + + PS + S+ L Sbjct: 127 DFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSLG 177 Query: 162 DLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + + ++H A+ DV L++ + + + Sbjct: 178 SIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 219 >gi|134104561|pdb|2IOC|B Chain B, The Crystal Structure Of Trex1 Explains The 3' Nucleotide Specificity And Reveals A Polyproline Ii Helix For Protein Partenring gi|134104562|pdb|2IOC|A Chain A, The Crystal Structure Of Trex1 Explains The 3' Nucleotide Specificity And Reveals A Polyproline Ii Helix For Protein Partenring Length = 242 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 33/222 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FFC 45 + D E G + + + V R +E+T + Sbjct: 12 QTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLSL 69 Query: 46 KPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRF 101 A P A ITG++ + G + + + F C++ +N R+ Sbjct: 70 CIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRY 129 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 D + R S +G D + ++ + + PS + S+ L Sbjct: 130 DFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSLG 180 Query: 162 DLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202 + + ++H A+ DV L++ + + + Sbjct: 181 SIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 222 >gi|293365308|ref|ZP_06612025.1| exonuclease [Streptococcus oralis ATCC 35037] gi|307703848|ref|ZP_07640789.1| DNA polymerase III, epsilon chain [Streptococcus oralis ATCC 35037] gi|291316758|gb|EFE57194.1| exonuclease [Streptococcus oralis ATCC 35037] gi|307622683|gb|EFO01679.1| DNA polymerase III, epsilon chain [Streptococcus oralis ATCC 35037] Length = 197 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 28/192 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F + L Q + VR + ++ + + + +TGIT Sbjct: 7 YIAFDLE-FNQHDGLTHLIQVSAVRF-QDGKESAAFDSY---VHTTVPLKSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + VE + + F I+GYN + D Sbjct: 62 AETLKDAPKVE-QVLKDFQAFVGDLP--IVGYNAAKSDLPILLEHGIDY----------R 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + DL D + GI + KLQ +A G H +H++ D T Sbjct: 109 DQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGF-HGKSHNSLEDARMT 158 Query: 185 LALVWLIREKKP 196 + E Sbjct: 159 ARVYEAFLESDE 170 >gi|229168274|ref|ZP_04295999.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH621] gi|228615100|gb|EEK72200.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH621] Length = 273 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 54/235 (22%), Gaps = 22/235 (9%) Query: 21 RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 V++D + I +TGIT + G + Sbjct: 18 EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLTGVG-NFPQII 73 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + QF ++ + + + Y SR+D+ + Y Sbjct: 74 EKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGVECPCMEKE-----SRFDVQKFVFQAY 127 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 + PS L H A AD T + + + + Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKVYGE-RDIN 176 Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254 + + ++ + + ++ A+ I Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKRMRKWVFKELRKNTERPFVWSAFESSDTWESI 231 >gi|89894542|ref|YP_518029.1| sporulation inhibitor KapD [Desulfitobacterium hafniense Y51] gi|89333990|dbj|BAE83585.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 222 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 5 FVIYDYETF-----GRD-VALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEA 57 F++ D+E G+ + +D + ++ T F KP E+ Sbjct: 16 FLVVDFEFSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWPRLAEES 75 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITGI + G++ E + + Q + P ++ + + + Y Y Sbjct: 76 YGITGIRQEDV-DQGILLEEAIQHL-QKLAHPEAYVVAWGDADRKILGNVCEKYGLKYPF 133 Query: 118 YRWSWDN 124 ++ + Sbjct: 134 VWENYID 140 >gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978] Length = 220 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 58/211 (27%), Gaps = 31/211 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + Q + P + D ++ G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 63 ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + +++ ++ +N FD + + R+ Sbjct: 84 IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + ++D + + L + GIE Sbjct: 144 -----TKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203 AH A D T L I K Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216 >gi|148992870|ref|ZP_01822489.1| exonuclease [Streptococcus pneumoniae SP9-BS68] gi|168490187|ref|ZP_02714386.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195] gi|147928322|gb|EDK79338.1| exonuclease [Streptococcus pneumoniae SP9-BS68] gi|183571454|gb|EDT91982.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195] gi|332073326|gb|EGI83805.1| exonuclease family protein [Streptococcus pneumoniae GA17570] Length = 196 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + VR R +I++ + + + Sbjct: 5 EDYIAFDLE---FNQHEGQTHLIQASAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + VE + +F + +IGYN + D Sbjct: 58 TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + DL D + GI + KLQ +A G + +H++ D Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYESFLESDQ 170 >gi|91794560|ref|YP_564211.1| oligoribonuclease [Shewanella denitrificans OS217] gi|123165774|sp|Q12J88|ORN_SHEDO RecName: Full=Oligoribonuclease gi|91716562|gb|ABE56488.1| Exonuclease [Shewanella denitrificans OS217] Length = 181 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60 N+ + D E G + +D + A + D + + V +D+ L D Sbjct: 6 NNLIWIDLEMTGLEPEVDVVIEIATLVTDSELNILAQGPVIAIHQSDETLAKMDDWNQKH 65 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + + EA+ + +F + + N+I D + Sbjct: 66 HGQSGLIDRVKASQFTEADAIEQTIKFLAQYVPKGASPMCGNSIGQDRRFLNKYMLELEE 125 Query: 116 DSYRW 120 + Sbjct: 126 YFHYR 130 >gi|332244613|ref|XP_003271468.1| PREDICTED: 3'-5' exoribonuclease 1 [Nomascus leucogenys] Length = 349 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRLHCGLDD 298 >gi|111221205|ref|YP_711999.1| oligoribonuclease [Frankia alni ACN14a] gi|111148737|emb|CAJ60413.1| Oligoribonuclease [Frankia alni ACN14a] Length = 256 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 15/38 (39%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D A D + A + D + ++ Sbjct: 15 MDRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILDE 52 >gi|86739751|ref|YP_480151.1| oligoribonuclease [Frankia sp. CcI3] gi|86566613|gb|ABD10422.1| Exonuclease [Frankia sp. CcI3] Length = 250 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 15/38 (39%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D A D + A + D + ++ Sbjct: 13 MDRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILDE 50 >gi|261334507|emb|CBH17501.1| phosphotransferase, putative [Trypanosoma brucei gambiense DAL972] Length = 540 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 49/198 (24%), Gaps = 15/198 (7%) Query: 3 NHFVIYDYETFGRDVALDR------PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDP 55 + +++ D+E + +F V VD R I + + +P + Sbjct: 32 DTYMVLDFEAT---CERHQRLEVPEVIEFPIVLVDARNGNTISEFQQ-YVRPVVNPQLSE 87 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +TGIT Q + + + N N Sbjct: 88 FCTELTGIT-QSVVDRASTFPDVFTAAMNYLHQNNCGETEINKRYLPVTCGDWDLKTMLP 146 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS---FKLQDLALANGIEHV 172 + G + + R S L D+ G+E Sbjct: 147 IQVKACIQQGFTVNVPPSLRRWFNIKQYMQRVLSPGLGQTVSQPIHDLPDMMSVLGLEMK 206 Query: 173 NAHDAKADVYATLALVWL 190 H + D +A V Sbjct: 207 GRHHSGIDDCRNIAAVLC 224 >gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] Length = 306 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 29/185 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+ET + + P V + +E + P + I GI Sbjct: 2 NFTAIDFET--ANERRNSPCSIGIAVV-KNGHVVEKIHHLIR--PKEMRFMPINIGIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P + + +I +F + ++ +N FD R D ++ + Sbjct: 57 RPAVVENEPE-FDKVWEKIKHYF---DGNLVIAHNASFDISVLRKTAELYDIDLPKFKY- 111 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 + M+ F KL + G E HDA D A Sbjct: 112 --------ICTMKLSKNFYRGIEN----------AKLNTVNDFLGYEF-KHHDALYDALA 152 Query: 184 TLALV 188 ++ Sbjct: 153 CSNIL 157 >gi|123442082|ref|YP_001006065.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089043|emb|CAL11861.1| putative exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 220 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 38/190 (20%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F + D ET+G + A + V + + P D +A+ I IT Sbjct: 3 FRVIDTETYGL---EGGIVEIASIDVMDGA--LSNPMSDLVSP--DRPISLDAMVIHHIT 55 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + ++ + + +N R W Sbjct: 56 EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 L + R +Y P + + +++ H A D Y T Sbjct: 98 ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144 Query: 185 LALVWLIREK 194 AL+ I Sbjct: 145 AALLQRIMRD 154 >gi|319946218|ref|ZP_08020458.1| exonuclease [Streptococcus australis ATCC 700641] gi|319747600|gb|EFV99853.1| exonuclease [Streptococcus australis ATCC 700641] Length = 197 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 34/200 (17%) Query: 1 MTN--HFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 M H+V +D E + + Q + VR +++ + + D Sbjct: 1 MKELSHYVSFDLE---FNQFEGKYHIIQVSAVRF-ADGQEVAHYDSYAYT---DKPLKSF 53 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT K L+ +E + F + +IGYN I+ D Sbjct: 54 INGLTGITSDKILQAPPLE-QVLAEFRDFVAESP--LIGYNAIKSDLPILTENG------ 104 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 ++ A+ F + PS G + +L +A G+ +HD Sbjct: 105 -LEFTNQ------------YAVDVFEEASKRRPSDLHGIKNLQLHTVAQFLGVA-GKSHD 150 Query: 177 AKADVYATLALVWLIREKKP 196 + D T + E Sbjct: 151 SLEDARMTALVYEAFLESDR 170 >gi|194221352|ref|XP_001916137.1| PREDICTED: similar to Three prime repair exonuclease 1 (3-5 exonuclease TREX1) (DNase III) [Equus caballus] Length = 362 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 29/207 (14%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDR---------------QWEKIESTEVFFCKP 47 + D E G + + + + V R + Sbjct: 60 QTLIFLDLEATGLPFSQPKVTELCLLAVHRCALESSPNPHGPPPTVPPPPRVVDKLSLCV 119 Query: 48 ADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDD 103 A P A ITG++ G +A+ + F C++ +N R+D Sbjct: 120 APGKACSPAASDITGLSTGMLTAHGRQRFDADLVNLLRAFLQRQPKPWCLVAHNGDRYDF 179 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + S +G D + ++ + + PS S+ L + Sbjct: 180 PLLQAELAVLGL----TSALDGAFCVDSIAALK-----ALEQAGSPSEHGPRKSYSLGSI 230 Query: 164 -ALANGIEHVNAHDAKADVYATLALVW 189 G ++H A+ DV A L++ Sbjct: 231 YTRLYGKAPPDSHTAEGDVLALLSICQ 257 >gi|195331405|ref|XP_002032393.1| GM23540 [Drosophila sechellia] gi|194121336|gb|EDW43379.1| GM23540 [Drosophila sechellia] Length = 184 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 13/35 (37%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 V D E G D+ D+ + A + D+ Sbjct: 11 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSE 45 >gi|116666695|pdb|1ZBU|A Chain A, Crystal Structure Of Full-Length 3'-Exonuclease gi|116666696|pdb|1ZBU|B Chain B, Crystal Structure Of Full-Length 3'-Exonuclease gi|116666697|pdb|1ZBU|C Chain C, Crystal Structure Of Full-Length 3'-Exonuclease gi|116666698|pdb|1ZBU|D Chain D, Crystal Structure Of Full-Length 3'-Exonuclease Length = 349 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQF--FSVPNT-----CIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ T + + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDLXKLKELGTKYKYSLLTDGSWDXSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXLEKLGXDYDGRPHCGLDD 298 >gi|55959491|emb|CAI12491.1| prion protein interacting protein [Homo sapiens] gi|56203066|emb|CAI23194.1| prion protein interacting protein [Homo sapiens] Length = 222 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 13/175 (7%) Query: 21 RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 +F ++++ + +IEST + +P P +TGI + Sbjct: 49 EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 107 Query: 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 R+ ++ + + + D G ++ L V Sbjct: 108 RVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQ 156 Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREK 194 + + L D+ ++H H D ++ + + Sbjct: 157 WINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 211 >gi|73536580|ref|XP_847714.1| hypothetical protein [Leishmania major strain Friedlin] gi|321438628|emb|CBZ12387.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 405 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 17/189 (8%) Query: 5 FVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59 ++ D E + GV ++ + +++ F P P Sbjct: 76 IIVVDVEATCEQNNRNYPHEVIEIPGVLINVRTGQVDRARSFHTFVKPWRNPRLTPFCTQ 135 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT Q+ + E + ++ T G I D + + + R Sbjct: 136 LTGIT-QEVVDAAPSITEAIQLFEKW--YWETIPRGAKTIFAADGPWDFKNFIHEHHILR 192 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + ++ LD+ G+ L N H+ Sbjct: 193 DHVGFPSIFYEYLDIRTTFAHRLNHGVPIKLDAM---------LRKMNLRFDGRPHNGFD 243 Query: 180 DVYATLALV 188 D Y L Sbjct: 244 DAYNIARLA 252 >gi|331002523|ref|ZP_08326041.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410339|gb|EGG89773.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon 107 str. F0167] Length = 331 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 71/242 (29%), Gaps = 30/242 (12%) Query: 2 TNHFVIYDYETF----GRDV-ALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 + +++ D E GR+ D + ++++ + E ++ KP Sbjct: 1 MDSYIVLDLEWNQSPNGREYSNKDLPFEIIEIGALKLNSRLETVDEFH-RVIKPTVYKKM 59 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNI 109 + + I + + GV E R +F + N + + N+ Sbjct: 60 HFKVHEVVQIGIGELKKKGVPFVEAIRDFFEFCELDNPEKKKILCTWGNLDLV------E 113 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169 RN Y + Y + L+ GI Sbjct: 114 LQRN-MKFYGVENKFDYPLF---------YYDIQKLFNIRYPNGEQDRIPLERAVNMLGI 163 Query: 170 EHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228 E H A D + T+ ++ + + K + L YR + I + VS Sbjct: 164 ETRRPFHHAFDDAFYTVKVLQNMDFEPVKEYYSLDYYRVPRNSEEEIYLHFSGYSKFVST 223 Query: 229 MF 230 +F Sbjct: 224 LF 225 >gi|290984185|ref|XP_002674808.1| predicted protein [Naegleria gruberi] gi|284088400|gb|EFC42064.1| predicted protein [Naegleria gruberi] Length = 304 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 24/211 (11%) Query: 6 VIYDYETFGRD---VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I D+ET + + F +A +TG Sbjct: 91 LILDFETTDLQTRAPTDCYIYNIS----------KDRFLSFPKYILPRVKILRDAEKLTG 140 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + G E E + I F P +I +N FD + + Sbjct: 141 ITNELVQN-GTKEMEAVKLIVDFL--PKKSLILAHNAPFDKSVLHRA--------FNYWR 189 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 N + D L I+ + ++ + + N H A ADV Sbjct: 190 MNNSKTIDGLKNSHIIFLDTIPILKKALKLEKNQCKLGNIYQQLFRKSIENQHTAAADVI 249 Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213 A ++ + K+ + ++ L+K Sbjct: 250 ALKEILEHVFGKESVIRNVKNHFKLIKDLKK 280 >gi|319941454|ref|ZP_08015782.1| exonuclease RNase T and DNA polymerase III [Sutterella wadsworthensis 3_1_45B] gi|319805074|gb|EFW01904.1| exonuclease RNase T and DNA polymerase III [Sutterella wadsworthensis 3_1_45B] Length = 194 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 ++ + D E G ++R + A + D+ + Sbjct: 19 DNLIWIDMEMTGLQPEVNRVLEVAAIITDKNLNILHE 55 >gi|229061116|ref|ZP_04198467.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH603] gi|228718199|gb|EEL69837.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH603] Length = 273 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 54/235 (22%), Gaps = 22/235 (9%) Query: 21 RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 V++D + I +TGIT + + G + Sbjct: 18 EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIGVG-NFPQII 73 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + QF ++ + + + Y SR+D+ + Y Sbjct: 74 EKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGVECPCMEKE-----SRFDVQKFVFQAY 127 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 + PS L H A AD T + + + Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKAYSE-RDIN 176 Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254 + + ++ + + +S A+ I Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKKMRKWAFKEMKKSAERPFVWSAFESSDTWESI 231 >gi|328949709|ref|YP_004367044.1| ATP-dependent DNA helicase, RecQ family [Marinithermus hydrothermalis DSM 14884] gi|328450033|gb|AEB10934.1| ATP-dependent DNA helicase, RecQ family [Marinithermus hydrothermalis DSM 14884] Length = 1673 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 55/193 (28%), Gaps = 23/193 (11%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 +V D E G D + Q V E+ +D Sbjct: 1 MKPYVFIDLEATGTDPNQAQILQI--VAYKEGAAPFEAFVDTPEPVSDTDEIWGFV---- 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G + +K R E + + ++ + + G+N + +D Sbjct: 55 GFSREKYDRHKRPLEEVLKELLEYV--GDQPLAGHNILFYDIPLLERWLRACGLALPPTP 112 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180 LD +R + P D+ + L DL A G V AHDA D Sbjct: 113 ---------ALDTLRLAHLIFPT-----PPDERLRGYGLGDLYAYFFGRPLVGAHDALLD 158 Query: 181 VYATLALVWLIRE 193 V A + + Sbjct: 159 VAANREVARELYR 171 >gi|198284062|ref|YP_002220383.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665313|ref|YP_002426714.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248583|gb|ACH84176.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517526|gb|ACK78112.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270] Length = 194 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 7/124 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 + D E G D+ + A + D + V + L D Sbjct: 8 LIWIDLEMTGLHPGQDQILEIATLVTDDSLRILCEGPVLAVHQPEFVLAALDDWNQRTHS 67 Query: 63 ITP--QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + Q+ + A + F T + N++ D + + R Sbjct: 68 TSGLLQRVRDSRLDMAAAETQTLDFLHQHVTTGTSPMCGNSVCQDRRFLARLMPRLERFF 127 Query: 118 YRWS 121 + Sbjct: 128 HYRM 131 >gi|15617165|ref|NP_240378.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133762|sp|P57637|ORN_BUCAI RecName: Full=Oligoribonuclease gi|25338349|pir||H84996 oligoribonuclease [imported] - Buchnera sp. (strain APS) gi|10039230|dbj|BAB13264.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 184 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 13/38 (34%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G + + R + A + D I Sbjct: 5 KKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAE 42 >gi|317026983|ref|XP_003188586.1| RNA exonuclease Rex2 [Aspergillus niger CBS 513.88] Length = 188 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 13/37 (35%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38 ++ V D E G D D+ Q D +E Sbjct: 7 SDPLVWIDCEMTGLDADTDQILQICCFITDANLNLLE 43 >gi|227015888|gb|ACP17985.1| putative exonuclease RNase T and DNA polymerase III [Pseudomonas nitroreducens] Length = 182 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 30/202 (14%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFI 60 FV D E G ++ + F C P A+ + Sbjct: 5 KEIFVSVDIEASGPIPGKYSMLSIGACVTS------DTAQRFTCYLKPISDEFVPAAMEV 58 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 TG++ K +G+ + ++ + + +G+N F ++ Sbjct: 59 TGLSLNKLREEGLSPIKAMKQFKVWVDSLAGEGASVIFVGFNASFD------WAFVNYYF 112 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + G + D+ + + S + D+ H Sbjct: 113 HEFIGENPFGIAALDI------------KSMYFGVAGSTWKSTRSSDIDKVLNPSSKGDH 160 Query: 176 DAKADVYATLALVWLIREKKPK 197 DA D L LIR+K + Sbjct: 161 DALHDAVYQAELFNLIRQKLMR 182 >gi|146092927|ref|XP_001466575.1| hypothetical protein [Leishmania infantum] gi|134070938|emb|CAM69614.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 502 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 21/239 (8%) Query: 9 DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E G +F V +D + + +P + +TGIT Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + + + + + ++ R YD + Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344 Query: 121 SWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAH 175 + S ++ + + F + D ++ ++ + +H Sbjct: 345 AAKANTSAEAMICMATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSY-SDHFKCR 403 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 AK T L + + + + D RN ++ + + + HVS + A R Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHR 457 >gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 66/218 (30%), Gaps = 37/218 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPAD--DY 51 M F V+ D E G + A D + A V V D Q + + F + Sbjct: 22 MARRFRGFLPVVIDVECGGFNCATDALLEIAAVTVGMDEQG-LLYPQDTLFYRVEPFAGA 80 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105 +P A+ TGI LR V E + I + I+ +N FD + Sbjct: 81 NIEPAALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGF 140 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 R + S +D + Y + L Sbjct: 141 LNAAIARCEIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQ 181 Query: 166 ANGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEY 201 A GI+ AH A+ D T L I + ++ + Sbjct: 182 AAGIDFDGREAHSARYDTEKTAELFCGIVNRWKEMGGW 219 >gi|291393623|ref|XP_002713390.1| PREDICTED: three prime repair exonuclease 1-like [Oryctolagus cuniculus] Length = 322 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 35/211 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDR---------QW---------EKIESTEVF 43 + D E G + + + + V R + ++ Sbjct: 19 MQALIFLDLEATGLPFSQPKITELCLLAVHRCALESAPPSEGPPAAVPQPPRVVDKLS-- 76 Query: 44 FCKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNI 99 C A P A ITG++ G + + F C++ +N Sbjct: 77 LC-VAPGKACSPAASKITGLSTAALAAHGRQRFDDNLVTLLLAFLQRQPVPWCLVAHNGD 135 Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 R+D + + S V + + PS S+ Sbjct: 136 RYDFPLLQAELATLGLSNALDS---------AFCVDSMAALKALEQSSSPSEHSPRKSYS 186 Query: 160 LQDL-ALANGIEHVNAHDAKADVYATLALVW 189 L + G +H A+ DV A L++ Sbjct: 187 LGSIYTRLYGQAPPESHTAEGDVLALLSVCQ 217 >gi|288959282|ref|YP_003449623.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] gi|288911590|dbj|BAI73079.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] Length = 209 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 46/183 (25%), Gaps = 29/183 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + V + E +P + I GI Sbjct: 9 VAIDFET--ANETRTSACSIG-VAWIEDGRVTAT-EEHLIRPREPRFNS-FNSAIHGIRA 63 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E + + +I +N FD R+ D Sbjct: 64 EDVADAPE-FPEVWATLRERVR---GRLILAHNAAFDISVLRHTLTDYGLDWPA------ 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 D L + WP+ +L LA GI + H +D A Sbjct: 114 ---CDYLCTVMLAR------RAWPALTG----HRLNHLADFLGIALDHHHAG-SDAEACG 159 Query: 186 ALV 188 + Sbjct: 160 RIA 162 >gi|330503165|ref|YP_004380034.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina NK-01] gi|328917451|gb|AEB58282.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina NK-01] Length = 182 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 46/188 (24%), Gaps = 23/188 (12%) Query: 6 VIYDYETF---GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 ++ D E G + + V + + + KP +T Sbjct: 5 LVIDLEATTDEGGWPMEEMEIIEIGASLVGVDGHERDHFQ-RIVKPQRRPCLTDFCRELT 63 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 IT + + ++ + ++G+++ + Y Sbjct: 64 HITQSDVDSA-APMPQVWAQFERWLTQHAPRLVGWSS----------------WGDYDRR 106 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180 R L+ + + + L G++ H A D Sbjct: 107 QLEQEWRQHHLNSLLSEVPHLNLKQAFAKARQLQRPIGLHSALQLAGMQFQGQQHRALED 166 Query: 181 VYATLALV 188 T L+ Sbjct: 167 ARNTARLL 174 >gi|322505025|emb|CAM42259.2| putative phosphotransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 575 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 11/208 (5%) Query: 3 NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 + +++ D E GR + +F V VD R ++ + + +P + + Sbjct: 50 DAYIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQ-RYVRPVKNPMLSRFCT 108 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT QF + + Y + Sbjct: 109 ELTGITQNMVSHRD-PFPVVYCEALQFLAEAGL----GDAPPLRSYCVVTCGDWDLKTML 163 Query: 119 RWSWDNGNSRWDLLDVMRAIY-AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + L R G+ + + D+ G+ H H + Sbjct: 164 PSQIRISGQQGTPLSFQRWCNLKKYMSGLGLRDGGERGGPTDMPDMLRILGLPHQGRHHS 223 Query: 178 KADVYATLALVWLIREKKPKLFEYLYDY 205 D +A V K+ + + + Sbjct: 224 GIDDCRNIAAVLCALLKRGLVVDTTFAT 251 >gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] Length = 220 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 57/213 (26%), Gaps = 31/213 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + D + + P + D ++ G Sbjct: 24 VVVDVETAGFNCQTDALLEIACIPIVYDEHGQFVPGPSFQAHINPFEGANLDRRSLDFIG 83 Query: 63 ITP------QKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 I P A + + +++ ++ +N FD + + R+ Sbjct: 84 IDPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQAAIARSG 143 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172 N + + D + + L + GIE Sbjct: 144 -----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LARACIQAGIEFDGK 185 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 AH A D T L I K Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPHLLDSLVT 218 >gi|322390290|ref|ZP_08063819.1| exonuclease [Streptococcus parasanguinis ATCC 903] gi|321143021|gb|EFX38470.1| exonuclease [Streptococcus parasanguinis ATCC 903] Length = 197 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 59/196 (30%), Gaps = 32/196 (16%) Query: 3 NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ +D E + + Q + V ++++ + + D + Sbjct: 5 EDYIAFDLE---FNQYEGAYQIIQVSAVHFTH-GKEVDHYDSY---VYTDKPLKSFINGL 57 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT K +E + F + +IGYN + D + D Y Sbjct: 58 TGITQDKIQNAPQLE-QVLSEFKAFV--GDRPLIGYNAKKSDLPILL-ENGLDLEDQYA- 112 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 D+ D PS G + +L +A G+ +HD+ D Sbjct: 113 --------VDVFDEAFERR---------PSDLHGIKNLQLHTVAEFLGVA-GKSHDSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTALVYEQFLEFDQ 170 >gi|68466641|ref|XP_722516.1| hypothetical protein CaO19.1466 [Candida albicans SC5314] gi|68466924|ref|XP_722377.1| hypothetical protein CaO19.9041 [Candida albicans SC5314] gi|46444347|gb|EAL03622.1| hypothetical protein CaO19.9041 [Candida albicans SC5314] gi|46444495|gb|EAL03769.1| hypothetical protein CaO19.1466 [Candida albicans SC5314] Length = 255 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 17/133 (12%) Query: 2 TNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51 V D E G DV D + + + + ++ + K + Sbjct: 44 KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDENGYESTIYYPKSRLDKMNEWC 103 Query: 52 LPDPEAVFITGITPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107 + G+T + VVE E I ++ T ++ N++ D ++ Sbjct: 104 IETHGKS---GLTDKILANPDRKLSVVEDELLEYIKKYVPEVRTGLLAGNSVYMDRFFMM 160 Query: 108 NIFYRNFYDSYRW 120 F + + Sbjct: 161 KEFPKVIDHLHYR 173 >gi|219681916|ref|YP_002468302.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682471|ref|YP_002468855.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471622|ref|ZP_05635621.1| oligoribonuclease [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219622204|gb|ACL30360.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624759|gb|ACL30914.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086294|gb|ADP66376.1| oligoribonuclease [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087458|gb|ADP67538.1| oligoribonuclease [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 184 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 13/38 (34%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G + + R + A + D I Sbjct: 5 KKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAE 42 >gi|322488733|emb|CBZ23980.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 502 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 21/240 (8%) Query: 9 DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E G +F V +D + + +P + +TGIT Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285 Query: 65 PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS---- 117 + + + P + + ++ R F Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344 Query: 118 --YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175 + + ++ ++ + +H Sbjct: 345 AAKANTSAEAMVCMATDGPWDMRRFMHECSVLRDGVAFPPVCYRYINVRHSY-SDHFKCR 403 Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235 AK T L + + + + D RN ++ + + + HVS + A R Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHRG 458 >gi|296283564|ref|ZP_06861562.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium bathyomarinum JL354] Length = 180 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 57/195 (29%), Gaps = 28/195 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET G VDR + KP D DP+A+ ++G++ Sbjct: 8 FISVDVETSGPIPGEFSLLSIGACAVDR----PDQHFECLLKPITDRA-DPKALEVSGLS 62 Query: 65 PQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + G+ + R + +G+N FD + F+R Sbjct: 63 LEILQHTGLEPVQAMERFEIWVGQMAGETGTPIFVGFNAP-FDWSFVNYYFHRFL----- 116 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 G + D+ Y G W + + G HD Sbjct: 117 RRNPFGFTALDI-----KAYYMGSAGTSWEATRSSK-------MRKQLGAALEGDHDPLN 164 Query: 180 DVYATLALVWLIREK 194 D A L L R K Sbjct: 165 DALAQAELFRLARTK 179 >gi|254975986|ref|ZP_05272458.1| putative exonuclease [Clostridium difficile QCD-66c26] gi|255093374|ref|ZP_05322852.1| putative exonuclease [Clostridium difficile CIP 107932] gi|255315119|ref|ZP_05356702.1| putative exonuclease [Clostridium difficile QCD-76w55] gi|255517789|ref|ZP_05385465.1| putative exonuclease [Clostridium difficile QCD-97b34] gi|255650904|ref|ZP_05397806.1| putative exonuclease [Clostridium difficile QCD-37x79] Length = 342 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/325 (9%), Positives = 83/325 (25%), Gaps = 12/325 (3%) Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 V V D + + I+ + +P + P +T I+ ++ Sbjct: 21 VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78 Query: 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136 E R+ ++ + + Y D N R+ + + N + + Sbjct: 79 EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 138 Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 I ++ L N +AHD D Y L I Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 189 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256 + + + + N ++ + + Sbjct: 190 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 248 Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 + +++ + + + +++ +++V+L+ +L + + E Sbjct: 249 IIDVNIQNLEIMKDINKKMDTIDKLKDIEEGYFYLLEDVYLDMKDVLEDLMLYRMNEDEY 308 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341 L + ++ Sbjct: 309 KYEIKNIIKMFDEDLDNEKIYINKC 333 >gi|56461520|ref|YP_156801.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR] gi|56180530|gb|AAV83252.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR] Length = 192 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 39/192 (20%), Gaps = 31/192 (16%) Query: 5 FVIYDYETF-------GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 ++I D E G D +F V + + F +P Sbjct: 12 YLIVDLEATCWDGNVEGLDRKQTVDDMEIIEFGCVIAEDNGTVRD-YRSFMVRPQSHPNL 70 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +T I V I Q+ G + S N Sbjct: 71 SEFCTQLTSIAQSDVDAAPV-YQSVVPEIDQWLKNYKLEGWGSWGNYDKNQISAEQRRHN 129 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + +W + S L + +G+ Sbjct: 130 LAPEFFSLSHMNIK------------------QEWRRGKVNSRSADLANAMKYHGLSFEG 171 Query: 174 AHDAKADVYATL 185 H D + Sbjct: 172 THHRGIDDALNI 183 >gi|260683975|ref|YP_003215260.1| putative exonuclease [Clostridium difficile CD196] gi|260687635|ref|YP_003218769.1| putative exonuclease [Clostridium difficile R20291] gi|260210138|emb|CBA64294.1| putative exonuclease [Clostridium difficile CD196] gi|260213652|emb|CBE05490.1| putative exonuclease [Clostridium difficile R20291] Length = 345 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/325 (9%), Positives = 83/325 (25%), Gaps = 12/325 (3%) Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 V V D + + I+ + +P + P +T I+ ++ Sbjct: 24 VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 81 Query: 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136 E R+ ++ + + Y D N R+ + + N + + Sbjct: 82 EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 141 Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 I ++ L N +AHD D Y L I Sbjct: 142 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 192 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256 + + + + N ++ + + Sbjct: 193 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 251 Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 + +++ + + + +++ +++V+L+ +L + + E Sbjct: 252 IIDVNIQNLEIMKDINKKMDTIDKLKDIEEGYFYLLEDVYLDMKDVLEDLMLYRMNEDEY 311 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341 L + ++ Sbjct: 312 KYEIKNIIKMFDEDLDNEKIYINKC 336 >gi|229134359|ref|ZP_04263172.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus BDRD-ST196] gi|228648980|gb|EEL05002.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus BDRD-ST196] Length = 273 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 55/235 (23%), Gaps = 22/235 (9%) Query: 21 RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 V++D + I +TGIT + + G + Sbjct: 18 EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIGVG-NFPQII 73 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + QF ++ + + + Y SR+D+ + Y Sbjct: 74 EKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGVECPCMEKE-----SRFDVQKFVFQAY 127 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 + PS L H A AD T + + + + Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKVYGE-RDIN 176 Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254 + + ++ + + ++ A+ I Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKRMRKWVFKELRKNTERPFVWSAFESSDTWESI 231 >gi|153879658|ref|ZP_02004868.1| exonuclease [Beggiatoa sp. PS] gi|152063878|gb|EDN65132.1| exonuclease [Beggiatoa sp. PS] Length = 65 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%) Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68 D ET G D + A + D++ + + V +P + + I GIT + Sbjct: 2 DTETTGLD-DNAEIVEIAII--DKEERTLINQLVKPTQPIPNEVIG-----IHGITDDEV 53 Query: 69 LRDGVV 74 + Sbjct: 54 KKAPTF 59 >gi|255656372|ref|ZP_05401781.1| putative exonuclease [Clostridium difficile QCD-23m63] Length = 342 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 30/325 (9%), Positives = 84/325 (25%), Gaps = 12/325 (3%) Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 V V D + + I+ + +P + P +T I+ ++ Sbjct: 21 VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78 Query: 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136 E R+ ++ + + Y D N R+ + + N + + Sbjct: 79 EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRNLFVDIKEK 138 Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 I ++ L N +AHD D Y L I Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNID 189 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256 + + + + ++ + ++ + + Sbjct: 190 IQNLLIIRDIIRAPFNDINSNLDNCFDKFKESLYKKEENYN-IVDFSVEIIKTVRMYLLT 248 Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 + +++ + + + +++ +++V+ + IL + + E Sbjct: 249 IIDVNIQNLEVMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDILEDLMLYRMHEDEY 308 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341 L + ++ Sbjct: 309 KHEIENIIKMLDEDLDNEKIYINKC 333 >gi|226349765|ref|YP_002776879.1| putative exonuclease [Rhodococcus opacus B4] gi|226245680|dbj|BAH56027.1| putative exonuclease [Rhodococcus opacus B4] Length = 240 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 12/114 (10%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET D + A + +++ D P A + GI+ Sbjct: 41 VILDTETSDLD---GSILEVAVIDAATGAVLLDTLVD-----PGDVQIHPAAAAVHGISA 92 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + + ++ +V ++ N FD +R+ D Sbjct: 93 AQLIGAP----DWPTVFSALAAVTADRVVLAYNASFDQSRIVYDCHRHGLDPLH 142 >gi|296450179|ref|ZP_06891940.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296878560|ref|ZP_06902565.1| exonuclease superfamily protein [Clostridium difficile NAP07] gi|296260942|gb|EFH07776.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296430367|gb|EFH16209.1| exonuclease superfamily protein [Clostridium difficile NAP07] Length = 345 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 30/325 (9%), Positives = 84/325 (25%), Gaps = 12/325 (3%) Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 V V D + + I+ + +P + P +T I+ ++ Sbjct: 24 VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 81 Query: 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136 E R+ ++ + + Y D N R+ + + N + + Sbjct: 82 EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRNLFVDIKEK 141 Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 I ++ L N +AHD D Y L I Sbjct: 142 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNID 192 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256 + + + + ++ + ++ + + Sbjct: 193 IQNLLIIRDIIRAPFNDINSNLDNCFDKFKESLYKKEENYN-IVDFSVEIIKTVRMYLLT 251 Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 + +++ + + + +++ +++V+ + IL + + E Sbjct: 252 IIDVNIQNLEVMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDILEDLMLYRMHEDEY 311 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341 L + ++ Sbjct: 312 KHEIENIIKMLDEDLDNEKIYINKC 336 >gi|311259462|ref|XP_003128134.1| PREDICTED: ERI1 exoribonuclease 3-like [Sus scrofa] Length = 232 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 68 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN 90 I + R+ ++ + Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG 154 >gi|55959492|emb|CAI12492.1| prion protein interacting protein [Homo sapiens] Length = 250 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN 90 I + R+ ++ + Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG 230 >gi|119627447|gb|EAX07042.1| prion protein interacting protein, isoform CRA_a [Homo sapiens] Length = 213 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 68 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN 90 I + R+ ++ + Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG 154 >gi|109475366|ref|XP_233435.4| PREDICTED: exoribonuclease 3 [Rattus norvegicus] Length = 406 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 299 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 358 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN 90 I + R+ ++ + Sbjct: 359 IIQAMVDGQP-SLQQVLERVDEWMAKEG 385 >gi|33867257|ref|NP_898815.1| putative exonuclease X [Rhodococcus erythropolis] gi|33669091|gb|AAP74085.1| putative exonuclease X [Rhodococcus erythropolis] Length = 201 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 12/111 (10%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D ET G + A + +++ C P +P+A + IT Sbjct: 32 ILDVETSGL---EGSIIEVAVIDAASGAVLLDTLVD--CGP---VQIEPDAHAVHSITAA 83 Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 E ++ S ++ YN +FD + +R+ D Sbjct: 84 DLDDAPR-WPEVFAQLAAITS--GRQVLAYNA-QFDQGRVLHDCHRSGIDP 130 >gi|73977195|ref|XP_862437.1| PREDICTED: similar to prion protein interacting protein 1 isoform 3 [Canis familiaris] Length = 208 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 68 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN 90 I + R+ ++ + Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG 154 >gi|71281793|ref|YP_271594.1| exonuclase [Colwellia psychrerythraea 34H] gi|71147533|gb|AAZ28006.1| exonuclase [Colwellia psychrerythraea 34H] Length = 228 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 31/206 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59 + D+ET G + D+ + + K + + +A Sbjct: 44 ILAVDFETTGLNAKQDKLLSVGFL--------TLKKQQMSLKTSYHQIIKTKAQLEESNV 95 Query: 60 -ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I IT + G A + + + ++ + R + + Y + Sbjct: 96 IIHHITDSQ-KEQGQALAIVVEALLKALA---GKVMLVHFARIERQFLAEACYELY---- 147 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 + ++D + A + + + +L +L + +AH+A Sbjct: 148 -----GMAPIFPMIDTL----ALAKRRLDKRDVAYDPSELRLTNLRNNFQLPEHHAHNAL 198 Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204 D AT L K K + Sbjct: 199 NDAIATAELFMAQMSKANKDGKTTLK 224 >gi|183602498|ref|ZP_02963863.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|219683541|ref|YP_002469924.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis AD011] gi|241190572|ref|YP_002967966.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis Bl-04] gi|183218139|gb|EDT88785.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|219621191|gb|ACL29348.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis AD011] gi|240248964|gb|ACS45904.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis Bl-04] gi|295793559|gb|ADG33094.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis V9] Length = 217 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 19/128 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----AVFI- 60 + D E G D+ D + + V D + ++ KP++ + + A+ Sbjct: 18 IWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMHTR 77 Query: 61 --------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G++ Q+A E + + QF ++ N++ D + Sbjct: 78 SGLIDEWENGLSVQEA------ERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPN 131 Query: 113 NFYDSYRW 120 + Sbjct: 132 LMEHLHYR 139 >gi|304360814|ref|YP_003856935.1| gp57 [Mycobacterium phage Angelica] gi|302858398|gb|ADL71146.1| gp57 [Mycobacterium phage Angelica] Length = 184 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 19/195 (9%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 M ++ D ET D P + A + VD + F + L DP+A+ Sbjct: 1 MARQLIVVDLETTSLDYDTAAPLEVALLNVD-----TGESLRFVPHVTCEQLGAADPKAM 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 I G + R+ + E + + + +N FD + + Sbjct: 56 EINGYYERGVWREALTEHQTAVAWSEVKDWLRDNTFAGSNPAFDSAIVARQAAGGMFPAP 115 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 L D+ D A L D+A G++ H A Sbjct: 116 I----GRVWHHRLADLAAYSAGKL--------DRDPAELVGLDDVAERLGVQVAQRHTAI 163 Query: 179 ADVYATLALVWLIRE 193 D AT L+R Sbjct: 164 GDAAATGLCFDLLRN 178 >gi|260768515|ref|ZP_05877449.1| hypothetical protein VFA_001567 [Vibrio furnissii CIP 102972] gi|260616545|gb|EEX41730.1| hypothetical protein VFA_001567 [Vibrio furnissii CIP 102972] gi|315180227|gb|ADT87141.1| hypothetical protein vfu_A01985 [Vibrio furnissii NCTC 11218] Length = 156 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 4/121 (3%) Query: 20 DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 + +D +I ++ KP D + V +TGITP+K + G A Sbjct: 5 GEIIEVGLAEIDLTAGEIVKRAQYYVKPEHDEV-SLFCVELTGITPRKIEKQGRPLAAVI 63 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + + + F + DD D + N + + + ++ Sbjct: 64 QSMVKNFGGSQKIYASW---GRDDQILMKECQAKGIDMPFKEFINLATLYRIQHRLKDKR 120 Query: 140 A 140 Sbjct: 121 I 121 >gi|257453441|ref|ZP_05618736.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60] gi|257449193|gb|EEV24141.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60] Length = 183 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 9/127 (7%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---AV 58 H + D E G D D + A + D + + VF D + + Sbjct: 5 KKHLIWIDLEMTGLDTLSDTIIEIATIVTDSELNILAEGPVFAIH-TPDIVLNSMDDWNT 63 Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113 G + + R V A+ F S + N+I D + Sbjct: 64 RQHGQSGLIDRIRRSNVTMAQAETETIAFLSKYVESGRSPMCGNSICQDRRFLARQMPTL 123 Query: 114 FYDSYRW 120 + Sbjct: 124 ERFFHYR 130 >gi|305680783|ref|ZP_07403590.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266] gi|305658988|gb|EFM48488.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266] Length = 209 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 12/37 (32%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D+ + A + D + Sbjct: 8 DRIVWIDLEMTGLDIHEHTIVEVAALITDADLNVLGE 44 >gi|125534582|gb|EAY81130.1| hypothetical protein OsI_36313 [Oryza sativa Indica Group] Length = 192 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 5/90 (5%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60 FV+ D E GR + +FA V VD E++ + +P + Sbjct: 23 FVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHRELTDYCREL 82 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN 90 TGI GV E R + Sbjct: 83 TGIAQADV-DAGVDLREALRAHDAWLDARG 111 >gi|311087943|gb|ADP68022.1| oligoribonuclease [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 178 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 13/38 (34%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G + + R + A + D I Sbjct: 5 KKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAE 42 >gi|52843158|ref|YP_096957.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|19880967|gb|AAM00600.1| Rnase T [Legionella pneumophila] gi|52630269|gb|AAU29010.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62 V+ D ET G D + + V +D + + + + P D +++ Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKDSSYFEHILPFPGAELDQKSLEFNQ 81 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P + A+ + + IH ++ +N FD + + R Sbjct: 82 IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 S ++ D G T A + AH Sbjct: 142 SPFHAFT------------------CFDTATLAGLIFGETVLAKAAQAAGLHFDSQEAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D T L L+ K Sbjct: 184 AIYDAEKTADLFCLMINK 201 >gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora] Length = 386 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%) Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 + A V +D Q D P++ + GI+ +A R + + +I Sbjct: 2 EVAVVHLDDQGNLTREWCSL---VNPDRDLGPQS--VHGISAAEARRAP-TFGQLAGQIA 55 Query: 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + ++ +N+ FD + F R Sbjct: 56 ELLKDR---VVVAHNLSFDARFLTAEFERLGI 84 >gi|315092205|gb|EFT64181.1| conserved domain protein [Propionibacterium acnes HL110PA4] Length = 88 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 9/79 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET D R + + + D + + EA + I+P Sbjct: 17 VILDTETTDLD---GRIIEISII--DAA---TGTVLMNQLINPQGAPIYAEARTVHHISP 68 Query: 66 QKALRDGVVEAEFSRRIHQ 84 + R+ Sbjct: 69 DDLATAP-TFTQVWPRLED 86 >gi|322387766|ref|ZP_08061375.1| DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] gi|321141633|gb|EFX37129.1| DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] Length = 196 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 32/195 (16%) Query: 5 FVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E + D+ Q + V ++ E++ + + + D +TG Sbjct: 7 YISFDLE---FNRHQDKTHLIQVSAVHF-KEGEEVGAFDSY---VYTDAPLKSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + VE E ++ F N +IGYN + D + Y + Sbjct: 60 ITSETLKGAPKVE-EVLQKFQVFV--GNLPLIGYNAAKSDLPILLEHGF-----DYSHQY 111 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + ++ + S G + KLQ +A G + +H++ D Sbjct: 112 L--------------VDVYNEALERRSSDLHGIANLKLQTVANFLGFK-GQSHNSLEDAR 156 Query: 183 ATLALVWLIREKKPK 197 T + + Sbjct: 157 MTARVYEAFLDSDES 171 >gi|262165616|ref|ZP_06033353.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223] gi|262171593|ref|ZP_06039271.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451] gi|261892669|gb|EEY38655.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451] gi|262025332|gb|EEY44000.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223] Length = 156 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 10/132 (7%) Query: 12 TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71 T G + +D KI +F KP D + +TGITP+K + Sbjct: 3 TTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEKDEI-SLFCAELTGITPRKIEKQ 55 Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 G E + + + F N + DD N + N + + + Sbjct: 56 GRPLVEVLQSMVKNFGGSNKIYASW---GRDDLILINECREKGIPVPFQEFLNLATLYRI 112 Query: 132 LDVMRAIYAFSP 143 ++ Sbjct: 113 QHRLKDKRIGHR 124 >gi|225021633|ref|ZP_03710825.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii ATCC 33806] gi|224945624|gb|EEG26833.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii ATCC 33806] Length = 209 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 12/37 (32%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D+ + A + D + Sbjct: 8 DRIVWIDLEMTGLDIHEHTIVEVAALITDADLNVLGE 44 >gi|121604376|ref|YP_981705.1| oligoribonuclease [Polaromonas naphthalenivorans CJ2] gi|120593345|gb|ABM36784.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] Length = 187 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60 + V D E G D +R + A V Q V +D+ L + Sbjct: 13 QNLVWLDCEMTGLDPEKERIIEIAVVVTGPQLTPRIEGPVLAIHQSDELLDQMDKWNKGT 72 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K V E + ++ F + T + N I D + + Sbjct: 73 HGRSGLIDKVKASTVTEEDAQAQLLAFLARYVPKGTTPMCGNTIGQDRRFLAKYMPKLEL 132 Query: 116 DSYRW 120 + Sbjct: 133 FFHYR 137 >gi|91217110|ref|ZP_01254072.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC 700755] gi|91184710|gb|EAS71091.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC 700755] Length = 424 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 24/198 (12%) Query: 5 FVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 ++I D ET G Q A V +++ ++ + D + + Sbjct: 242 YLIVDIETSGLPQKTANGTNYPEIIQIAWVVTNKKGLVLKKNSIIIE--TDFIKENNYSS 299 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 + I + A + +++ + + + ++ +N Sbjct: 300 IVN-IDFEVARKVMFPLQHALKKLTEDIKICD-YVVSHNTDFDLSILGHYYTKLYGI--- 354 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVNAHDA 177 N SR + M++ + ++ + KL +L E N+H+A Sbjct: 355 -----NPLSRKATICTMKSTVNYCKIPNKFGYKFP-----KLSELYNKLFDYEVKNSHNA 404 Query: 178 KADVYATLALVWLIREKK 195 + DV TL ++ Sbjct: 405 EIDVLHTLKCFKKLKSIN 422 >gi|182417131|ref|ZP_02948504.1| exonuclease [Clostridium butyricum 5521] gi|237669064|ref|ZP_04529048.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378973|gb|EDT76479.1| exonuclease [Clostridium butyricum 5521] gi|237657412|gb|EEP54968.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 205 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 37/224 (16%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 + +D ET Q + + VD + + + + FF + DP A I G Sbjct: 2 KLLFFDTETTSIKP--GSICQLSYITVDASTKPQVTTGKNFFFTVDE---MDPSAQEIHG 56 Query: 63 ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 + +K L +G + + F + I +N+ FD + ++ + Sbjct: 57 FSLEKLYELSEGQYFEDLAFDFINDFREAD--FIIGHNVNFDIRFLKHELFTLG------ 108 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--------- 171 + A+ D + P + + KL ++ + Sbjct: 109 -------ELFEPKNIFCTMAYYKDICRIPKANGEIKNPKLSEVIDWLNVSEKQIAETSEK 161 Query: 172 -----VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210 N HDA+ D AT V +K Y + + Sbjct: 162 LFEGSGNYHDARFDTAATYLTVIEGLKKGHIAKGYFTNILKQQN 205 >gi|330984568|gb|EGH82671.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str. M301315] Length = 178 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 + + D E G D +D + A + D + + V +D+ L D Sbjct: 4 KQNLIWIDLEMTGLDPDIDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114 G + Q+ + AE +F + I N+I D + Sbjct: 64 QHGGSGLTQRVRESTISMAEAEAHTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123 Query: 115 YDSYRW 120 + Sbjct: 124 NWFHYR 129 >gi|219872207|ref|YP_002476582.1| oligoribonuclease [Haemophilus parasuis SH0165] gi|219692411|gb|ACL33634.1| oligoribonuclease [Haemophilus parasuis SH0165] Length = 168 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 15/120 (12%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDPEAVFITGIT 64 G D +R + A + D+ + + K ++ + A G+ Sbjct: 2 TGLDPEKERIIEIATIITDKDLNILAEGPVLAVYQPDELLNKMSEWCVKTHTA---NGL- 57 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 ++ + + E + F I N+I D + + Sbjct: 58 VERVKQSKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLYKYMPNLADYFHYRH 117 >gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501] gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501] Length = 203 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 66/218 (30%), Gaps = 37/218 (16%) Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPAD--DY 51 M F V+ D E G + A D + A V + D Q + + F + Sbjct: 1 MARRFRGFLPVVIDVECGGFNCATDALLEIAAVTIGMDEQG-LLYPQDTLFYRVEPFAGA 59 Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105 +P A+ TGI LR V E + I + I+ +N FD + Sbjct: 60 NIEPAALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGF 119 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 R + S +D + Y + L Sbjct: 120 LNAAIARCEIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQ 160 Query: 166 ANGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEY 201 A GI+ AH A+ D T L I + ++ + Sbjct: 161 AAGIDFDGREAHSARYDTEKTAELFCGIVNRWKEMGGW 198 >gi|157737359|ref|YP_001490042.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018] gi|315637075|ref|ZP_07892298.1| exonuclease superfamily protein [Arcobacter butzleri JV22] gi|157699213|gb|ABV67373.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018] gi|315478611|gb|EFU69321.1| exonuclease superfamily protein [Arcobacter butzleri JV22] Length = 171 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 61/193 (31%), Gaps = 32/193 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D+ET ++ + A V++D+ + ++ ++ + + + +TP Sbjct: 2 IILDFETNTNNI--GDVLEIAAVKIDKNFNILDKFHRYYLSRFP---LNFYSYEVHRLTP 56 Query: 66 QKA----LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 + + F + +I +N + + + ++N + Sbjct: 57 ELILDYRKDKNYSSYFSEDEDFEKFCYESETLIAHNISFELRHINNRVKFKNCICTMSE- 115 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179 + + + ++ + KL + GIE H A Sbjct: 116 --------------------NKNIVNVFGKNGRIKNPKLDETCNYYGIEFDASKYHSATY 155 Query: 180 DVYATLALVWLIR 192 DV T ++ + Sbjct: 156 DVTKTYEILKRMN 168 >gi|261856160|ref|YP_003263443.1| exonuclease RNase T and DNA polymerase III [Halothiobacillus neapolitanus c2] gi|261836629|gb|ACX96396.1| Exonuclease RNase T and DNA polymerase III [Halothiobacillus neapolitanus c2] Length = 183 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 14/38 (36%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 T + + D E G D D + A + D+ + Sbjct: 7 TENLIWIDLEMTGLDPMTDTIIEMATLVTDKHLNILAE 44 >gi|333027435|ref|ZP_08455499.1| putative exonuclease [Streptomyces sp. Tu6071] gi|332747287|gb|EGJ77728.1| putative exonuclease [Streptomyces sp. Tu6071] Length = 219 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 33/139 (23%), Gaps = 14/139 (10%) Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNI 99 PE I GI KA +G I + + N+ Sbjct: 10 TMSWLINPGVPIPPETTEIHGIDDAKATAEGADPKAALDEIAGRLAQALLYGMPVVAFNL 69 Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGATS 157 +D R+ S D L + A I Q G Sbjct: 70 AYDWTVLTRELERHGLPSMA----------DRLPGLSAPALVDSHVIDKQVDKYVRGTGR 119 Query: 158 FKLQDLALANGIEHVNAHD 176 KLQ G+ + H Sbjct: 120 RKLQPTCERYGVVLEDWHT 138 >gi|184201097|ref|YP_001855304.1| oligoribonuclease [Kocuria rhizophila DC2201] gi|183581327|dbj|BAG29798.1| oligoribonuclease [Kocuria rhizophila DC2201] Length = 199 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 17/114 (14%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D E G ++ D + A + D + + S KP P + Sbjct: 2 WIDCEMTGLSLSEDALIEVAALVTDDELNVLGSGVDVVIKP-----PQQALEQMNDFVRT 56 Query: 67 KALRDG-VVEAE-----------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108 G + E E I ++ +G N++ D + Sbjct: 57 MHENSGLLPELERGMDMAQAQAMVLDYIREWVPDAGKAPLGGNSVGTDKTFLTR 110 >gi|302531526|ref|ZP_07283868.1| predicted protein [Streptomyces sp. AA4] gi|302440421|gb|EFL12237.1| predicted protein [Streptomyces sp. AA4] Length = 524 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 46/191 (24%), Gaps = 34/191 (17%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D +T G R + A +R + A P IT Sbjct: 77 FTALDVKTTGLHT--GRVLEVAAIRFRGDGTFLGEFATVVAADASRRNP-------HRIT 127 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + S + + F + ++ +++ + Sbjct: 128 AAELADAPA----LSGILGRLFELCQGAVLVAHDLSSV-EGLLTEIGQLG---------- 172 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 +R + +++L +A A GIE + A+ A Sbjct: 173 ----------VRLPRLPAISLKDTAQAALPLPNYRLATIARAFGIEDFPGYLAEPAARAC 222 Query: 185 LALVWLIREKK 195 + + Sbjct: 223 AQAMLALVGTH 233 >gi|194041195|ref|XP_001926820.1| PREDICTED: three prime repair exonuclease 1-like [Sus scrofa] Length = 314 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 35/210 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDR------------------QWEKIESTEVFF 44 + D E G + + + + V R ++ Sbjct: 12 QTLIFLDLEATGLPFSQPKVTELCLLAVHRCALESLPIPQGPSPTVPPPPRVLDKLS--L 69 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAEF--SRRIHQFFSV--PNTCIIGYNNIR 100 C A P A ITG++ G + + + F +C++ +N R Sbjct: 70 C-VAPGKACSPAASEITGLSTAVLAAHGRQYFDANLANLLRAFLQRQPQPSCLVAHNGDR 128 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S D V + + S S+ L Sbjct: 129 YDFPLLQAELAMLGLASALD---------DTFCVDSIAALKALEQADGSSEHGPRKSYSL 179 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 180 GSIYTRLYGQAPPDSHTAEGDVLALLSICQ 209 >gi|242078555|ref|XP_002444046.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor] gi|241940396|gb|EES13541.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor] Length = 122 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%) Query: 1 MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56 M + FV+ D+E G + +F V VD + + + +P Sbjct: 1 MFDFFVVIDFEATCQEGSVIYPQEIIEFTSVLVDGATGRTLSTFRT-YVRPRHHPCLTDF 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 +TGIT GV AE ++ Sbjct: 60 YRDLTGITQDDV-DAGVSLAEALEMHDRWLEEHGA 93 >gi|194226477|ref|XP_001915858.1| PREDICTED: similar to histone mRNA 3 end-specific exonuclease [Equus caballus] Length = 349 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R++ + + + + + + R Sbjct: 190 TGITQDLVDGAD-TFPQVLRKVVDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCRLSRL 248 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298 >gi|224049609|ref|XP_002196066.1| PREDICTED: three prime histone mRNA exonuclease 1 [Taeniopygia guttata] Length = 387 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 17/195 (8%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+E G +F V V+ + +IE T + KP + + + Sbjct: 168 ICVVDFEATCEEGNPPEFVHEIIEFPVVLVNTRTLEIEDTFQQYVKPEINPKLSDFCISL 227 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + + + + ++ ++ D + + F R Sbjct: 228 TGITQDIVDKAD-IFPQVLQNVIEWMRQRELGTKYSYSMLTDGSWDMSKFLNTQCRISRI 286 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179 + + +W I + + P KL + G+ + H Sbjct: 287 KYPSFAKKW------INIRKSYGNFYKVPRNQT-----KLTIMLENLGMNYDGRPHSGLD 335 Query: 180 DVYATLALVWLIREK 194 D + + + Sbjct: 336 DSKNIARIAIRMLQD 350 >gi|315443587|ref|YP_004076466.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium sp. Spyr1] gi|315261890|gb|ADT98631.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium sp. Spyr1] Length = 206 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 44/202 (21%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 D E G D+ D + A + D + + A+D D +T Q Sbjct: 2 WIDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIH-AEDSALDSMIDVVT----Q 56 Query: 67 KALRDGVVE-----------AE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + G++E AE I + T + N+I D + + Sbjct: 57 MHTKSGLIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARDMPK- 115 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 D Y S L + E Sbjct: 116 -LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------QPEKGL 150 Query: 174 AHDAKADVYATLALVWLIREKK 195 AH A AD++ ++ + R+ Sbjct: 151 AHRALADIHESIRELRYYRQTA 172 >gi|222628577|gb|EEE60709.1| hypothetical protein OsJ_14204 [Oryza sativa Japonica Group] Length = 142 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLP 53 V D E G D+ DR + A + D + ++IE + C D Sbjct: 69 KPLVWIDLEMTGLDITKDRILEIACIITDGKLTKRIEVSIETKCFCNSDCSI 120 >gi|213401823|ref|XP_002171684.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275] gi|211999731|gb|EEB05391.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275] Length = 187 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 16/128 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST--------EVFFCKPADDYLPDPE 56 V D E G +V D + A + D IE + + D + Sbjct: 9 LVWVDCEMTGLEVGKDVLMEVAAIITDGDLNPIEEKFEETIHVDDDKLRQMNDWCIDHHG 68 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112 A +T ++ + + +++ + +I N++ D + + Sbjct: 69 ASGLT----ERCRQCKQSVNQVEQKLLNYIQKYIPRRREALIAGNSVHADVRFLTVEMPK 124 Query: 113 NFYDSYRW 120 + Sbjct: 125 VIEHLHYR 132 >gi|320583877|gb|EFW98090.1| 3'-5' RNA exonuclease [Pichia angusta DL-1] Length = 374 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 10/125 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYLPDP 55 V D E G D+ D + + D+ I+ ++ + + Sbjct: 35 IVWIDCEMTGLDLLNDHIIEICALVTDKHLRLIDDEGFEAVIHYSQERMNQMDEWCRTHH 94 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T + + VE + + ++ S + G N++ D + + Sbjct: 95 GDSGLTKKVVESSNTLEDVENQLLEYLSKYMSKGVGILAG-NSVHVDRQFLCKEMPKITD 153 Query: 116 DSYRW 120 Sbjct: 154 YLTYR 158 >gi|270292817|ref|ZP_06199028.1| exonuclease [Streptococcus sp. M143] gi|270278796|gb|EFA24642.1| exonuclease [Streptococcus sp. M143] Length = 196 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 32/194 (16%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E + Q + VR + ++ + + + +TG Sbjct: 7 YIAFDLE---FNQHEGVTHLIQVSAVRF-QDGQESAAFDSY---VHTSVPLKSFINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 IT + VE + + F I+GYN + D Sbjct: 60 ITAETLKDAPKVE-KVLKDFQAFVGDLP--IVGYNAAKSDLPILLEHGIDY--------- 107 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + DL D + GI + KLQ +A G H +H++ D Sbjct: 108 -RDQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGF-HGKSHNSLEDAR 156 Query: 183 ATLALVWLIREKKP 196 T + E Sbjct: 157 MTARVYEAFLESDE 170 >gi|308187156|ref|YP_003931287.1| exodeoxyribonuclease X [Pantoea vagans C9-1] gi|308057666|gb|ADO09838.1| exodeoxyribonuclease X [Pantoea vagans C9-1] Length = 223 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 52/197 (26%), Gaps = 48/197 (24%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPE 56 M F + D ET G Q V V + + D + Sbjct: 1 MM--FRVIDTETCGL--------QGGVVEVASVDVVNGQIVNPMSDLT---LPDRPISRQ 47 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + IT +E E R + + +N FD R Sbjct: 48 AMAVHRITEAMVAGKPTIE-EAIPRYY------GSAFYVAHNASFD---------RRMLP 91 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 W + M+ WP G + + ++AH Sbjct: 92 EMYGEW---------ICTMQLARQL------WPGIKYGNQALRHSLKLDVTPPADLHAHR 136 Query: 177 AKADVYATLALVWLIRE 193 A D Y T AL+ I E Sbjct: 137 ALYDCYVTAALLIRIME 153 >gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205] gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205] Length = 221 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 59/222 (26%), Gaps = 49/222 (22%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------A 57 V+ D ET G + D + A + + + F PA +P + Sbjct: 25 VVVDVETAGFNSQTDALLEIACIPI-----VYDQQGQFIPGPAFHAHINPFEGANLDRRS 79 Query: 58 VFITGITP------QKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105 + GI P A E RRI + + ++ +N FD + Sbjct: 80 LDFIGIDPFNPMRVAMAED----ERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGF 135 Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165 + R+ N + + D + + L + Sbjct: 136 LQAAIARSG-----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LARACI 177 Query: 166 ANGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 GIE AH A D T L I K Sbjct: 178 QAGIEFDGKEAHSALYDTQKTAELFCYILNKLSPHLLDSLVT 219 >gi|255101554|ref|ZP_05330531.1| putative exonuclease [Clostridium difficile QCD-63q42] gi|328887708|emb|CAJ69282.2| putative exonuclease [Clostridium difficile] Length = 342 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 30/325 (9%), Positives = 82/325 (25%), Gaps = 12/325 (3%) Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 V V D + + I+ + +P + P +T I+ ++ Sbjct: 21 VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78 Query: 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136 E R+ ++ + + Y D N R+ + + N + + Sbjct: 79 EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 138 Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 I ++ L N +AHD D Y L I Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 189 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256 + + + + N ++ + + Sbjct: 190 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 248 Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 + +++ + + + +++ +++V+ + +L + + E Sbjct: 249 IIDVNIQNLEIMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDVLEDLMLYRMNEDEY 308 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341 L + ++ Sbjct: 309 KYEIKNIIKMFDEDLDNEKIYINKC 333 >gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5] Length = 240 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 28/166 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D+ET + + + I E +P + + I GI P Sbjct: 48 IAIDFET--ANEQRGSACSVGLAWI-EEGRVI-RVEERLIRPREMR-FSGMNIAIHGIRP 102 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E H F + +N FD +R D YR S+ Sbjct: 103 EDVEDAPE-FPEVMDEFHDDFR---GATMIAHNAAFDFSV-----WRASLDLYRQSY--- 150 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + WP S +L +A G+ Sbjct: 151 -------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 185 >gi|194758479|ref|XP_001961489.1| GF14994 [Drosophila ananassae] gi|190615186|gb|EDV30710.1| GF14994 [Drosophila ananassae] Length = 362 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 24/153 (15%) Query: 4 HFVIYDYETFGR---DVALDRPAQF------AGVRVDRQWEKIESTEVFFCKPADDYL-- 52 + D ET + A + +R+ ++ V P + Sbjct: 16 TIAVLDLETTNLPAYSHNRVGITELCIHAFDAALLTERKGDEDGKNAVKSILPQPPRVLH 75 Query: 53 -----------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNI 99 P+A TG++ R+ + I F C++ +N Sbjct: 76 KLNLLFQPSMMVHPDAEDATGLSNYLLERESKFSKDSVGLILSFMKHLPAPVCLVAHNGW 135 Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132 FD + ++ + G + D L Sbjct: 136 NFDFPIIKQALEKHIAEIPSSGLLPGVTCVDSL 168 >gi|126700012|ref|YP_001088909.1| putative exonuclease [Clostridium difficile 630] Length = 345 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 30/325 (9%), Positives = 82/325 (25%), Gaps = 12/325 (3%) Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 V V D + + I+ + +P + P +T I+ ++ Sbjct: 24 VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 81 Query: 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136 E R+ ++ + + Y D N R+ + + N + + Sbjct: 82 EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 141 Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 I ++ L N +AHD D Y L I Sbjct: 142 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 192 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256 + + + + N ++ + + Sbjct: 193 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 251 Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316 + +++ + + + +++ +++V+ + +L + + E Sbjct: 252 IIDVNIQNLEIMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDVLEDLMLYRMNEDEY 311 Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341 L + ++ Sbjct: 312 KYEIKNIIKMFDEDLDNEKIYINKC 336 >gi|59712121|ref|YP_204897.1| exonuclease KapD [Vibrio fischeri ES114] gi|197336268|ref|YP_002156326.1| exonuclease KapD [Vibrio fischeri MJ11] gi|59480222|gb|AAW86009.1| exonuclease KapD [Vibrio fischeri ES114] gi|197317758|gb|ACH67205.1| exonuclease KapD [Vibrio fischeri MJ11] Length = 176 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 20/137 (14%) Query: 3 NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E G + +D ++ ++ KP D + Sbjct: 4 NRIVCFDLEMCCWNENGKGRTG------EIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEI 57 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 V +TGI+P+K + G A+ + + + F N + D+ Sbjct: 58 -SLFCVDLTGISPRKIEKQGRPLADVLKSMVKNFGGTNKIYAAW---GHDEQILEAECKA 113 Query: 113 NFYDSYRWSWDNGNSRW 129 + + N + + Sbjct: 114 KGIEVPFNEFLNLATIY 130 >gi|314983265|gb|EFT27357.1| conserved domain protein [Propionibacterium acnes HL110PA3] Length = 87 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 9/79 (11%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 VI D ET D R + + + D + + EA + I+P Sbjct: 17 VILDTETTDLD---GRIIEISII--DAA---TGTVLMNQLINPQGAPIYAEARTVHHISP 68 Query: 66 QKALRDGVVEAEFSRRIHQ 84 + R+ Sbjct: 69 DDLATAP-TFTQVWPRLED 86 >gi|326426891|gb|EGD72461.1| hypothetical protein PTSG_11592 [Salpingoeca sp. ATCC 50818] Length = 978 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 14/162 (8%) Query: 4 HFV-IYDYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 F+ + D+E D +F V +D ++I + F+C+P + + P Sbjct: 33 TFICVVDFEAT---CEEDDANFPHEIIEFPLVIIDVHRKEIVEKQQFYCRPVFNPILSPF 89 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-NIRFDDYYSRNIFYRNFY 115 +TGI + ++ + G+ + D + F++ + Sbjct: 90 CTQLTGIKQESVDSA-AEFPHVLDQVMAILDKYRSHDAGHKLLLASDGPWDFRNFFQ--W 146 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 S LD+ +A A + + S Sbjct: 147 QCRASSVPAPALMHQWLDIRKAFRACRGGVKRRGDQLLNMLS 188 >gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius thermophilus JW/NM-WN-LF] Length = 170 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 26/157 (16%) Query: 32 RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 E IE ++ +P Y P V+I GI P+ + +E R I + Sbjct: 2 EAGEIIEKQH-WYIRPKPFY-FHPYNVYIHGIKPEDVRDEP-DFSEIWREISTYLENN-- 56 Query: 92 CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 ++ +N FD R+ DL D+ + + + Sbjct: 57 -LVVAHNASFDISVLRH-------------------VLDLYDLDYPQFDYLCTKKLAEKQ 96 Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188 + L+ +A ++ HDA D YA + Sbjct: 97 WPHLDKYGLKSIAKFLDVKF-KHHDAMEDAYACAQIA 132 >gi|77163872|ref|YP_342397.1| oligoribonuclease [Nitrosococcus oceani ATCC 19707] gi|76882186|gb|ABA56867.1| Exonuclease [Nitrosococcus oceani ATCC 19707] Length = 183 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 +++ + D E G + D + A V D Q IE V D L D Sbjct: 5 SSNLIWLDLEMSGLNTIQDVILEIATVVTDSQLNIIEEGPVIAVHQKDIILDNMDEWNTR 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 + ++ + EA +R +F + N+ + N+I D + + Sbjct: 65 QHNKSGLVERVRHSLISEAAAEQRTLEFLNRHTPANSSPMCGNSICQDRRFLARYMPKLE 124 Query: 115 YDSYRW 120 + Sbjct: 125 AHFHYR 130 >gi|54298969|ref|YP_125338.1| ribonuclease T [Legionella pneumophila str. Paris] gi|53752754|emb|CAH14189.1| ribonuclease T [Legionella pneumophila str. Paris] Length = 207 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62 V+ D ET G D + + V +D + + E + P D +++ Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLAFNQ 81 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P + A+ + + IH ++ +N FD + + R Sbjct: 82 IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 S ++ D G T A + AH Sbjct: 142 SPFHAFT------------------CFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D T L L+ K Sbjct: 184 AIYDAEKTADLFCLMINK 201 >gi|314923751|gb|EFS87582.1| exonuclease [Propionibacterium acnes HL001PA1] gi|314966126|gb|EFT10225.1| exonuclease [Propionibacterium acnes HL082PA2] gi|314982038|gb|EFT26131.1| exonuclease [Propionibacterium acnes HL110PA3] gi|315090803|gb|EFT62779.1| exonuclease [Propionibacterium acnes HL110PA4] gi|315095017|gb|EFT66993.1| exonuclease [Propionibacterium acnes HL060PA1] gi|315104354|gb|EFT76330.1| exonuclease [Propionibacterium acnes HL050PA2] gi|327328205|gb|EGE69974.1| oligoribonuclease [Propionibacterium acnes HL103PA1] Length = 202 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 15/44 (34%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 V D E G D+A D + A + D Q KP Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPE 45 >gi|328791793|ref|XP_624063.2| PREDICTED: probable oligoribonuclease-like [Apis mellifera] Length = 144 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPA 48 V D E G + D + A + D + E + +P Sbjct: 9 IVWIDTELTGLQIETDTILEIACLITDEDLNIVSEEFNIVINQPD 53 >gi|307942306|ref|ZP_07657657.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] gi|307774592|gb|EFO33802.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] Length = 195 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 38/155 (24%), Gaps = 12/155 (7%) Query: 9 DYETFGR-------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 D T G D R QF+GV + + + +D A + Sbjct: 7 DLATTGLPRGRNINDPDYPRMVQFSGVLFTTDGTVHGRAQDYIQQ--EDKRTSKSAENVH 64 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT K+ G+ EA I+ + FD R R D Sbjct: 65 GITDTKSRTLGIPEAIAVAWFTNRLKASE--IVTGWALPFDLDIIRAALIRMNKDPLALI 122 Query: 122 WDNGNSR-WDLLDVMRAIYAFSPDGIQWPSRDDGA 155 L WP + Sbjct: 123 RPGLIKVDLQELMTPIMGKQAEDGSHMWPKLSESY 157 >gi|241686335|ref|XP_002411687.1| exonuclease, putative [Ixodes scapularis] gi|215504479|gb|EEC13973.1| exonuclease, putative [Ixodes scapularis] Length = 337 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 22/196 (11%) Query: 5 FVIYDYETFGR----DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 F++ D+E +F ++V+ + ++EST + +P + Sbjct: 106 FLVLDFEATCSREKPPPHPQEIIEFPVLKVNGRSFQVESTFHQYVQPRVHRELSSFCTEL 165 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYY-SRNIFY 111 TGI E + HQ+ + + + S+ ++ Sbjct: 166 TGIIQDMVDEQP-FFEEVLEKFHQWMCSEGLLGPPEKRVAFVTFGDWDLQKMLPSQCSYF 224 Query: 112 RNFYDSYRWSWDNGNSRW----DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL-- 165 + Y SW N + Q G S + ++ + Sbjct: 225 KIPVPEYLTSWINLKKAFVEATGHWPKTLPETLEYCRLEQVGRHHSGIGSHDMPEVCILR 284 Query: 166 -ANGIEHVNAHDAKAD 180 H HD+ D Sbjct: 285 VDLDYPHEQ-HDSHVD 299 >gi|117621372|ref|YP_857935.1| oligoribonuclease [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166215748|sp|A0KNT4|ORN_AERHH RecName: Full=Oligoribonuclease gi|117562779|gb|ABK39727.1| oligoribonuclease [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 181 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 7/115 (6%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + V D E G D + + A + D+ + V +D+ L + + Sbjct: 6 QNLVWIDMEMTGLDPEQNVVLEIATIVTDKDLNVLAEGPVIAIHQSDEELAKMDDWNVNT 65 Query: 63 ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110 T + EA+ F T + N+I D + Sbjct: 66 HTNSGLVARVKASQHDEAQAVAETLDFIRQWVPERTSPLCGNSIGQDRRFMVKHM 120 >gi|212716446|ref|ZP_03324574.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum DSM 16992] gi|212660699|gb|EEB21274.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum DSM 16992] Length = 216 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 + D E G D+ D + + V D ++ F KP+D Sbjct: 17 LIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKPSD 61 >gi|54295804|ref|YP_128219.1| ribonuclease T [Legionella pneumophila str. Lens] gi|53755636|emb|CAH17138.1| ribonuclease T [Legionella pneumophila str. Lens] gi|307611851|emb|CBX01565.1| ribonuclease T [Legionella pneumophila 130b] Length = 207 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62 V+ D ET G D + + V +D + + E + P D +++ Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P + A+ + + IH ++ +N FD + + R Sbjct: 82 IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 S ++ D G T A + AH Sbjct: 142 SPFHAFT------------------CFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHS 183 Query: 177 AKADVYATLALVWLIREK 194 A D T L L+ K Sbjct: 184 AIYDAEKTADLFCLMINK 201 >gi|256022685|ref|ZP_05436550.1| ribonuclease T [Escherichia sp. 4_1_40B] Length = 83 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + ++D Q + ++T F +P PEA+ G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 63 ITP 65 I P Sbjct: 80 IDP 82 >gi|304396220|ref|ZP_07378102.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB] gi|304356589|gb|EFM20954.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB] Length = 223 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 67/274 (24%), Gaps = 63/274 (22%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPE 56 M F + D ET G Q V V + D + Sbjct: 1 MM--FRVIDTETCGL--------QGGVVEVASVDVVDGRIVNPMSDLT---LPDRPISRQ 47 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 A+ + IT +E E R + + +N FD R Sbjct: 48 AMAVHRITEAMVAGKPTIE-EAIPRYY------GSAFYVAHNASFD---------RRMLP 91 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 W + M+ WP G + + ++AH Sbjct: 92 EMYGEW---------ICTMQLARQL------WPGIKYGNQALRHSLKLDVTPPAELHAHR 136 Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236 A D Y T LIR + + + DI + Sbjct: 137 ALYDCYVTA--ALLIRIMETSGWSASEMIVRSQPAAQRDDILPF------------GKYR 182 Query: 237 TALIAPVAW-HPRYKDSVIGCNLSGDMRVFQDLD 269 IA +A P Y V+ + Q L+ Sbjct: 183 GQAIAVIARKDPGYLKWVLNNVSDLRPPLRQALN 216 >gi|297625994|ref|YP_003687757.1| Oligoribonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921759|emb|CBL56317.1| Oligoribonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 223 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 8/109 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFITG 62 V D E G D+A D + A + D + +P+ L + Sbjct: 2 LVWIDCEMTGLDLANDELIEVACLVTDGELNVQGDGIDVLVQPSKHALDHMGEFVTEMHT 61 Query: 63 ITPQKALRDGV------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + A V E + I ++ + N I D + Sbjct: 62 KSGLLAELKNVKTTMREAEEQVLAYIKKYVPTERKAPLAGNTIGTDRTF 110 >gi|119585972|gb|EAW65568.1| three prime histone mRNA exonuclease 1, isoform CRA_a [Homo sapiens] Length = 288 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 69 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 128 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + + R Sbjct: 129 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 187 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 188 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 237 >gi|326925262|ref|XP_003208837.1| PREDICTED: ERI1 exoribonuclease 3-like [Meleagris gallopavo] Length = 484 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 15/176 (8%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 165 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 224 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + R+ ++ + S + D Sbjct: 225 IIQGMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 272 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDA 177 G ++ L V + + L D+ ++H H Sbjct: 273 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSG 328 >gi|152967659|ref|YP_001363443.1| oligoribonuclease [Kineococcus radiotolerans SRS30216] gi|151362176|gb|ABS05179.1| Exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] Length = 206 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 18/53 (33%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 T+ V D E G + D + A + D + KP + L D Sbjct: 7 TDRIVWIDCEMTGLSLTEDALVEVAVLVTDADLNVLGDGVDVVIKPPAESLVD 59 >gi|291233033|ref|XP_002736458.1| PREDICTED: Eri3 protein-like [Saccoglossus kowalevskii] Length = 216 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 53/179 (29%), Gaps = 15/179 (8%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F++ D+E + + +++ + + E+ + +P + + P +T Sbjct: 23 FLVLDFEATCEKSTKIYPQEIIEIPVLKIHAKTFETEAIFHTYVQPTANPILTPFCTELT 82 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GIT +E E + + ++ + D + Sbjct: 83 GITQDVVCGKPKIE-EALKMLDKWMLDQG-----------LLDGETAFVFVTCGDWDLKT 130 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 G ++ L + ++ + L ++ +EH H + D Sbjct: 131 MLPGQCKYFRLPIANYFKSWINIKRPFSEVVRPNIRVDLMEMLQMLDLEHHGRHHSGID 189 >gi|213409417|ref|XP_002175479.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275] gi|212003526|gb|EEB09186.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275] Length = 311 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 68/224 (30%), Gaps = 24/224 (10%) Query: 1 MTNHFV-IYDYETF-----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLP 53 M ++ + D E G + +F + D Q I+ + KP Sbjct: 60 MKLRYLLVVDVEATCEEGCGFSYM-NEIIEFPCLLYDLEQKRIIDEFHT-YVKPRRIPTL 117 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +T I PQK + + +H+F S + +I N +SR Sbjct: 118 SNYCKELTKI-PQKLIDNAPPFKTVLDLLHEFLSKHDDKLIPPVNGPNTFEWSRLPKTAY 176 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ--------------WPSRDDGATSFK 159 + S + + WD+ + +A + + + + S Sbjct: 177 HFRSQKNWAWACDGPWDMASFVAKEFATTEENNPPSWINGPFVDVRSLFSDAFRVSKSNI 236 Query: 160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203 L+ N H+ D + ++ ++++ + + Sbjct: 237 NAMLSRWNLTFEGQEHNGLDDARNLVRVIQHMQQEDIEFEHNRW 280 >gi|242078557|ref|XP_002444047.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor] gi|241940397|gb|EES13542.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor] Length = 287 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 21/194 (10%) Query: 1 MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56 M + FV+ D+E G + +F V VD + + + +P Sbjct: 1 MFDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRT-YVRPRHHPRLTDF 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT GV AE + + + + D Sbjct: 60 CRDLTGITQGDV-DAGVSLAEALEMHDHWLEAHGAKL-------------GKLAVVTWGD 105 Query: 117 SYRWSWDNGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174 + G R+ ++ + + + G F LQD G+ Sbjct: 106 WDCRTMLEGECRFKGIEKPHYFDHWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGRL 165 Query: 175 HDAKADVYATLALV 188 H D T L+ Sbjct: 166 HCGLDDALNTAHLL 179 >gi|160893421|ref|ZP_02074206.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50] gi|156864816|gb|EDO58247.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50] Length = 319 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 52/208 (25%), Gaps = 29/208 (13%) Query: 4 HFVIYDYETF-------GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 ++++ D E G + + V+VD+ + I+ KP Sbjct: 2 NYIVMDLEWNQSYSGHIGEHPRMPFEIIEIGAVKVDKNYRIIDEYSSLI-KPRIYKKLHS 60 Query: 56 EA-VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + + + L G E +F I D + + Sbjct: 61 KIRTILN--YDETDLAKGRGFKEVCT---EFLEWCGKDYIFCTWGPMDLTELQTNMAFYY 115 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 D N + +++ S + +A N E Sbjct: 116 MDKLPRPLKFLNLQQIYANMV--------------DPTGSTVSKLEKAVADFNIPEDEPF 161 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYL 202 H A D T ++ + + K Sbjct: 162 HSAVNDARYTALVLKEMHPRNLKDLYSF 189 >gi|307721509|ref|YP_003892649.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306979602|gb|ADN09637.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 233 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 10/110 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + D A + D+ V + + P A I IT Sbjct: 2 LIFTDIETTGLEAD-DVMCGIALLSEDK---------VMYELLNEGKKIPPLASSIHHIT 51 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 + + + + P +I +N + + + Sbjct: 52 NEMIQDKKLFIQSEVHDFLEQNNNPKNTLIAHNIKFDLEKLAAAGLHWQG 101 >gi|229018743|ref|ZP_04175593.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1273] gi|228742549|gb|EEL92699.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1273] Length = 273 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 58/235 (24%), Gaps = 22/235 (9%) Query: 21 RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 V++D + I +TGIT + + +F Sbjct: 18 EIVDIGAVKIDASTMKIIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIG----VEKFP 70 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + I +F I + + D + + + + SR+D+ + Y Sbjct: 71 QIIEKFIKFIGEDFIFISWGKEDYRFLSHDCTLHGVECPCME---KESRFDVQKFVFQAY 127 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 + S + L E H A AD T + + + Sbjct: 128 ---------EELFEHTPSLQFAVEQLDLTWE-GRQHRAFADAENTANIFLKAYSE-RDIN 176 Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254 + + ++ + + +S A+ I Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKKMRKWAFKEMKKSAERPFVWGAFESSDTWESI 231 >gi|148361305|ref|YP_001252512.1| ribonuclease T [Legionella pneumophila str. Corby] gi|296108645|ref|YP_003620346.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy] gi|148283078|gb|ABQ57166.1| ribonuclease T [Legionella pneumophila str. Corby] gi|295650547|gb|ADG26394.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy] Length = 207 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 9/127 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62 V+ D ET G D + + V +D + + E + P D +++ Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I P + A+ + + + IH ++ +N FD + + R Sbjct: 82 IDPYQPLRFAVDEQIALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 SYRWSWD 123 S ++ Sbjct: 142 SPFHAFT 148 >gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42] gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42] Length = 196 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 29/170 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + ++ ++ E +P D + I Sbjct: 1 MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E H+ S + +N FD +R D YR S Sbjct: 55 GIRPEHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQS 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + + WP S +L +A G+ Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 141 >gi|254784370|ref|YP_003071798.1| exonuclease [Teredinibacter turnerae T7901] gi|237683955|gb|ACR11219.1| putative exonuclease [Teredinibacter turnerae T7901] Length = 235 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/210 (10%), Positives = 49/210 (23%), Gaps = 35/210 (16%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---- 55 M + F++ D E G D + V + ++ L Sbjct: 38 MRENRFLVVDCEMSGLDANRSQLLSIGWVVI-ENARITHAS-------GKHLLIHADRGA 89 Query: 56 -EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ I G+ + I ++ +++ D + + Y NF Sbjct: 90 GDSTRIHGLHDATIAGA----KSAAAAITLLAKQVPGSVLVFHHAPLDLRFLQQTAYENF 145 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVN 173 + + + + + +L G Sbjct: 146 RCPLLFGYVDTMLI----------------EQRRLQLQGAESGLRLAQCRERYGLPPISG 189 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLY 203 H+A D AT L+ Sbjct: 190 HHNAMTDARATAELLLAQTSYLGGAGRVSL 219 >gi|210635237|ref|ZP_03298449.1| hypothetical protein COLSTE_02380 [Collinsella stercoris DSM 13279] gi|210158455|gb|EEA89426.1| hypothetical protein COLSTE_02380 [Collinsella stercoris DSM 13279] Length = 321 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 50/196 (25%), Gaps = 16/196 (8%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDY----LPDPEAVFITG 62 D ET GR +D + + + F+C + Y +P + I Sbjct: 135 IDIETTGRAPERGYIINVGWELMDLKSDAVPRDPRAFYCGIPEMYRETGVPLAD---IHH 191 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + + + + I +N F+D ++ Y + Sbjct: 192 IQWSDLEGK-TPFRQDVKLQKELLKLMKRYPIMAHNAAFED-----SWFMLHLPGYAEAR 245 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G + ++D + + P A+ + H D Sbjct: 246 RAG--KIIVIDSRHICRSIDGEVRALPRESAPASLQNWARRRGTLAADENELHLGLDDTD 303 Query: 183 ATLALVWLIREKKPKL 198 L V K Sbjct: 304 LMLRTVQAEFNGKNMF 319 >gi|145588884|ref|YP_001155481.1| exonuclease, RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047290|gb|ABP33917.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 218 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 37/218 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +I+D E D + A + + ++ + + + A+ I Sbjct: 5 IIFDVEAT--DKNNAVIIEAASLDVTSLKPFEVGNP--WVQRYNPGKPISLGALATHHIL 60 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 ++ + F T + +NI FD Sbjct: 61 DEELVNCPAS--------SSFRLPAGTKYLIGHNIDFDWVAIG---------------SP 97 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 R L + R+++ Q L NAH A ADV+ Sbjct: 98 EVKRICTLALARSLWPDLDSHTQSALLYYFERDTARDQLR--------NAHSALADVWVC 149 Query: 185 -LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 + +I + P + L++ K ++ ++ Sbjct: 150 SKIVAQIINQLHPISLDALWEMSEKARIPTVMPYGKHK 187 >gi|150390277|ref|YP_001320326.1| exonuclease, RNase T and DNA polymerase III [Alkaliphilus metalliredigens QYMF] gi|149950139|gb|ABR48667.1| Exonuclease, RNase T and DNA polymerase III [Alkaliphilus metalliredigens QYMF] Length = 192 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 27/150 (18%) Query: 4 HFVIYDYETFGRDVALD-------------------RPAQFAGVRVDRQWEKIESTEVFF 44 ++I+D+E + A + V+ + ++E E+ ++F Sbjct: 2 KYIIFDFE---FNSAFRIDRKTKRLMKGNTNPLCPQEIIEIGAVKTNDEFEIEETFQMF- 57 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN---NIRF 101 +P P+ T IT + L G + + + + + Sbjct: 58 VRPVLYTKLHPKVKKKTQITNEDLLG-GKSLNSSITALQHWINEDEFIMCSWGKDDINEL 116 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 S N+ D Y + DL Sbjct: 117 KRNCSFFEIQTNWIDKYCDIQKMCMNYLDL 146 >gi|255505894|ref|ZP_05348724.3| exonuclease family protein [Bryantella formatexigens DSM 14469] gi|255265267|gb|EET58472.1| exonuclease family protein [Bryantella formatexigens DSM 14469] Length = 318 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 34/336 (10%), Positives = 94/336 (27%), Gaps = 37/336 (11%) Query: 4 HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G++ + + ++++ + + + + +P Sbjct: 7 NYIVFDLEWNQCPDGKEHEMRELPFEILEIGAIKLNSEKIETDRFHE-YIRPTVYTRMHN 65 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + I I + +F + + F C + + RN Sbjct: 66 KTQEIVHIRQEVLENA-----DFFPAVLERFREW--CGPDAHYCTW-GSLDLLELQRNIR 117 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NA 174 + ++ + + ++ +DG + L+ IE Sbjct: 118 YHKLTGFFPFPLKFYDIQKIFSLAF-----------EDGKSRRTLEHAVDMLNIEKNVPF 166 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H+A +D + T A++ + + + + +R + + + + + + Sbjct: 167 HEALSDAWYTAAVMRFLPDDTLHSYYSIDYFRIPQR-----RSEEIYETFQNYSKYVSKK 221 Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294 + A R + + + S S+ E G + I+ Sbjct: 222 FPSRTAAMKDRVVRSTTCYLCGKKAVKKIPWFTGGSKNYR---CLSYCEEHGWLKGKIRI 278 Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTL 330 + K ER R E+ Sbjct: 279 KKAEDGKGCFCVKTLKLVSEERAREIIARYEEHAEK 314 >gi|145579953|pdb|2O4I|A Chain A, Structure Of Trex1 In Complex With Dna gi|145579954|pdb|2O4I|B Chain B, Structure Of Trex1 In Complex With Dna Length = 247 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 32/187 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + D E G + + + V R +E+T + Sbjct: 13 MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLS 70 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100 A P A ITG++ + G + + + F C++ +N R Sbjct: 71 LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 130 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + R S +G D + ++ + + PS + S+ L Sbjct: 131 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 181 Query: 161 QDLALAN 167 + Sbjct: 182 GSIYTRL 188 >gi|219668974|ref|YP_002459409.1| sporulation inhibitor KapD [Desulfitobacterium hafniense DCB-2] gi|219539234|gb|ACL20973.1| Exonuclease RNase T and DNA polymerase III [Desulfitobacterium hafniense DCB-2] Length = 209 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 5 FVIYDYETF-----GRD-VALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEA 57 F++ D+E G+ + +D + ++ T F KP E+ Sbjct: 3 FLVVDFEFSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWPRLAEES 62 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 ITGI + G++ E + + Q + P ++ + + + Y Y Sbjct: 63 YGITGIRQEDV-DQGILLEEAIQHL-QKLAHPEAYVVAWGDADRKILGNVCEKYGLKYPF 120 Query: 118 YRWSWDN 124 ++ + Sbjct: 121 VWENYID 127 >gi|268578589|ref|XP_002644277.1| C. briggsae CBR-CRN-4 protein [Caenorhabditis briggsae] gi|187027645|emb|CAP32715.1| CBR-CRN-4 protein [Caenorhabditis briggsae AF16] Length = 298 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 38/288 (13%) Query: 3 NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEA 57 +H +I D+ET D QF+ V +D + + + F P Sbjct: 9 DHLLILDFETTSGGKNRDYPTEIIQFSVVPLDVKAKTMLEGIAFNKFVRPVINPTLSEHC 68 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPN------TCIIGYNNIRFDDYYSRNIFY 111 +TGI + ++ ++ + + + Sbjct: 69 AELTGIKQESLNSAD-TFLVVYKQFLEWLQKNGFQERHFAIVSDSRQDMWRIAQYQFRLV 127 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R S W N +D DG++ ++ + ++ ++ GIE Sbjct: 128 RETMPSMFRQWINIKRTFD-------------DGLEDGQKEKLVGTTNIEKMSNYLGIEL 174 Query: 172 -VNAHDAKADVYATLALV-WLIREKKPKLFEYLYDYR---NKNQLRKLIDIQNMTPLVHV 226 AHDA +D A+ ++ P + K + + + Sbjct: 175 SGKAHDALSDCLNIAAITHKILEIGCPVTINEMLCCSAIWRKKPIDMTLHANWKMDFLLA 234 Query: 227 SGMFG--------ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQ 266 +F R+ TA + V + + +V G R F Sbjct: 235 HNIFHLVLPLTIKVVRNYTANMYGVCPYCKKPPTVCGAVHKQPPREFY 282 >gi|225350877|ref|ZP_03741900.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158333|gb|EEG71575.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 216 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49 + D E G D+ D + + V D ++ F KP++ Sbjct: 17 LIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKPSN 61 >gi|268577613|ref|XP_002643789.1| Hypothetical protein CBG02000 [Caenorhabditis briggsae] gi|187037741|emb|CAP23178.1| hypothetical protein CBG_02000 [Caenorhabditis briggsae AF16] Length = 299 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 12/197 (6%) Query: 3 NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57 ++ +I D+E D QF+ ++ + + I F + +P + Sbjct: 10 DNLLILDFEGTCEKDDHDYPSEIIQFSVCVLNTRDKIIREDVSFNKYVRPVINPKLTDFC 69 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI Q + + E + + + SR +R Sbjct: 70 AELTGI-DQDTIDNARTFPEVYNQFCAWLKEHD----FQEKRFAIVCDSRQDMWRLAQYQ 124 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + + + + + Y D +D S + A N AH+A Sbjct: 125 FLLNKQPFPTIFRQWVNLSLYY--RQDLRMAQQQDAVHQSLIERMSAFYNIPNEGQAHNA 182 Query: 178 KADVYATLALVWLIREK 194 D + I + Sbjct: 183 MDDCSFLAKVTKRILDN 199 >gi|227495721|ref|ZP_03926032.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434] gi|226834741|gb|EEH67124.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434] Length = 206 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48 ++ V D E G D+ D + A V D + + + KP Sbjct: 4 SDPLVWIDCEMTGLDLGKDALIEVAVVVTDYELKPLGEGIDVLIKPP 50 >gi|225556491|gb|EEH04779.1| oligoribonuclease [Ajellomyces capsulatus G186AR] Length = 189 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 9/125 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55 V D E G + D+ Q D I E D + Sbjct: 10 LVWIDCEMTGLNPRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMNDWCIKTH 69 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T I + T ++ N++ D + Y Sbjct: 70 GQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRERTGLLAGNSVHADKEFLACKPYSMIL 129 Query: 116 DSYRW 120 + + Sbjct: 130 EWLHY 134 >gi|187933597|ref|YP_001884755.1| exonuclease family protein [Clostridium botulinum B str. Eklund 17B] gi|187721750|gb|ACD22971.1| exonuclease family protein [Clostridium botulinum B str. Eklund 17B] Length = 301 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 19/175 (10%) Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 + + ++VD+ +++ + KP+ + +P IT IT ++G+ + Sbjct: 36 ENEIIEIGVIKVDKYMKQVAEMRE-YIKPSIFPVMNPVVTNITKITMDTLEKEGITFKQG 94 Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138 ++ + +I N Y N+ D Sbjct: 95 MDKLKGMIKEGD--VICSWAKDDVAEIIINSNYHNYTDLSWIK----------------E 136 Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193 Y + A K L +++ HDA D TL + I Sbjct: 137 YLDLQEYSTKILGHKKAMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHIYN 191 >gi|301603560|ref|XP_002931486.1| PREDICTED: ERI1 exoribonuclease 3 [Xenopus (Silurana) tropicalis] Length = 338 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 F++ D+E + +F ++++ + +IEST + +P P +TG Sbjct: 130 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 189 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPN 90 I ++ R+ ++ + Sbjct: 190 IIQDMVDGQP-TLSQVLERVDEWMAKEG 216 >gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3] gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3] Length = 280 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 46/165 (27%), Gaps = 26/165 (15%) Query: 32 RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 E I+ + + D + I GITP + EF + F Sbjct: 5 ENGEIID---TLYELINPEEDFDYYNIAIHGITPSDVKDA-LTFPEFYEAYKKRFENK-- 58 Query: 92 CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 ++ + + FD Y R+ R S Sbjct: 59 -LLVAHYLPFDGYALRDSLRRYELPSVYN-------------------NLLCTYQLSKKL 98 Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 G S+ L+ L IE N H+A D A L+ + K Sbjct: 99 ITGEKSYTLKYLCKHFSIELNNHHNALEDARACAQLMLQLSHKYD 143 >gi|154271267|ref|XP_001536487.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150409710|gb|EDN05154.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 189 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 9/125 (7%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55 V D E G + D+ Q D I E D + Sbjct: 10 LVWIDCEMTGLNPRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMNDWCIKTH 69 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T I + T ++ N++ D + Y Sbjct: 70 GQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRERTGLLAGNSVHADKEFLACKPYSMIL 129 Query: 116 DSYRW 120 + + Sbjct: 130 EWLHY 134 >gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 297 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 44/183 (24%), Gaps = 29/183 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V D+ET + D + + E +P P + I GI P Sbjct: 4 VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ETRLIRP-PQMRFSPGNIRIHGILP 58 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 E + ++ +N FD W Sbjct: 59 ADVRDAP-TFPEVFAEFRPDLT---GALLLAHNAGFDMGVLAASLAA---------WGEP 105 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 ++ PD L +A GI + HDA D +A Sbjct: 106 VPDMAGHCTLQIARRIFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154 Query: 186 ALV 188 + Sbjct: 155 EIA 157 >gi|296137636|ref|YP_003644877.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] gi|295797758|gb|ADG32547.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] Length = 179 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 10/123 (8%) Query: 1 MTNHFVIYDYETF-----GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 MT ++ D E G A D + V + +++ + L Sbjct: 1 MTPVVLVIDLEATCDDADGL-PASDMEIIEIGAVWATVEGSVLDTFQALVRPVVRPQL-T 58 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRN 113 P +T I + + R+ F + + +FD R+ Sbjct: 59 PFCRQLTNIQQADVDGAEL-FPAVAARLASFAQRHQAPGATWGSWGQFDAKQLARDCERH 117 Query: 114 FYD 116 + Sbjct: 118 GIE 120 >gi|229012729|ref|ZP_04169899.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides DSM 2048] gi|228748564|gb|EEL98419.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides DSM 2048] Length = 273 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 53/235 (22%), Gaps = 22/235 (9%) Query: 21 RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 V++D + I +TGIT + + G + Sbjct: 18 EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIGVG-NFPQII 73 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + QF + + + + SR+D+ + Y Sbjct: 74 EKFIQFIGEDSIFV------SWGKEDYHFLSQDCTLYGVECPCMEKESRFDVQKFVFQAY 127 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 + PS L H A AD T + + + + Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKVYGE-RDIN 176 Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254 + + ++ + + ++ A+ I Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKRMRKWVFKELRKNTERPFVWSAFESSDTWEGI 231 >gi|308235417|ref|ZP_07666154.1| oligoribonuclease [Gardnerella vaginalis ATCC 14018] gi|311114824|ref|YP_003986045.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019] gi|310946318|gb|ADP39022.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019] Length = 235 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 10/125 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFIT- 61 + D E G D+ D + + V D + ++ KP+D + + Sbjct: 17 LIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMHT 76 Query: 62 --GITPQKALRDGVVEAEFSRRIHQ----FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G+ + ++G+ E +++ + F + N++ D + Sbjct: 77 SSGLVDE-CNKNGLPLEEAQKQVVEYVKRFLPEHGKAHLAGNSVGSDKKFLDRYMPDLMA 135 Query: 116 DSYRW 120 + + Sbjct: 136 NLHYR 140 >gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100] gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter lari RM2100] Length = 459 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 34/322 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + + ++ D ET G D Q + + D I + KP EA I Sbjct: 147 LKLNVIVIDTETTGLREWEDEILQLSII--DETGYLI---FDKYFKPK-YKSTWIEAQKI 200 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GI P ++ + + IIGYN + R I + Sbjct: 201 HGIKPAFVQNKASIDNYKIQ--LEKIFNDADVIIGYNLDFDLKFIKRVIDFEKPMFCIDV 258 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + ++ + + L L AH A D Sbjct: 259 MKLFTSYYHEESSILPNVDCGYSYKKLTFAAWHFKNPNALNPL------NFHGAHGALED 312 Query: 181 VYATLALVWL-------------------IREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221 ATL ++ ++ + ++ + Sbjct: 313 ARATLYVLTKLEQTLSSTPNYKNFRKRLGFNRIIDLFYQDFLKKEEEELNKQKLKSDIKD 372 Query: 222 PLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSH 281 + + A+ + I+ + ++ Y I M+V+ + ++ L + Sbjct: 373 TVDKLYNEMIAALGSDVKISKIIYNS-YATFYIKNQKKWVMKVYFNENAKAQKALLNIPN 431 Query: 282 DELKGLVPVPIKEVHLNKCPIL 303 + + + + I+ Sbjct: 432 SKFRKVDEKFFIRQNKKLKEII 453 >gi|242239767|ref|YP_002987948.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] gi|242131824|gb|ACS86126.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] Length = 181 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 31/204 (15%) Query: 1 MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV 58 M++ + D ET G + V T+ + + D L PEAV Sbjct: 1 MSDELYVSVDVETSGPVPGIYSLLSIGACVVSEP------TQSIYLELQPDGLKHDPEAV 54 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRN 113 +TG+ K +G+ ++ Q+ + +G N + Sbjct: 55 AVTGLDLTKLESEGLPPQVAMLKLEQWLTQVCPAEQKVIFVGLNAPFD----------WS 104 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 F + Y + G + + + Y G W K + V Sbjct: 105 FINYYFHKYS-GMNPFGFTAIDMKAYYMGLTGCLWKET-------KSSQMTARFNPISVP 156 Query: 174 AHDAKADVYATLALVWLIREKKPK 197 +H+A D L L+ + Sbjct: 157 SHNALDDARFQGELFALMLAEARN 180 >gi|171317547|ref|ZP_02906736.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria MEX-5] gi|171097307|gb|EDT42153.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria MEX-5] Length = 174 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F+ D ET G VD F D+++ PEA+ +TG++ Sbjct: 8 FISVDVETAGPIPGEFSMLTLGACLVDDPSR---KFSCSFRPINDNFV--PEALKVTGLS 62 Query: 65 PQKALRDGVVEAEFSRRIHQFF----SVPNTCIIGYNNIRFDDYYSRNIFYR 112 ++ +DG+ + + + + + N FD + F+R Sbjct: 63 LERLAKDGLSPGDAMQNFAVWIGLQCTEWELPVFVGLNAPFDWSFVNYYFHR 114 >gi|186682035|ref|YP_001865231.1| exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC 73102] gi|186464487|gb|ACC80288.1| Exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC 73102] Length = 187 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 6/130 (4%) Query: 5 FVIYDYETFGRDVALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++I D E D + V ++R +I+S F +P Sbjct: 9 YLIVDLEATCCDKKTIPRHEMEIIEIGAVMLNRATWEIDSEFQQFIQPVRHPQLTDFCTK 68 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I Q E R ++ I + ++ + NF + Sbjct: 69 LTSIQQQDVDEAPK-FIEAISRFKEWICSFPNHIFCSWGNYDKKQFIQDCAFHNFAYPFT 127 Query: 120 WSWDNGNSRW 129 N + Sbjct: 128 SEHINIKEEF 137 >gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM 12042] gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM 12042] Length = 187 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 41/216 (18%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIES-----TEVFFCKPADDYL-PDPEAVFIT 61 D+ET + + P V + ++ + +P Y P + I Sbjct: 6 IDFET--ANPS---PMSACAV----GLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIH 56 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 GITP + F ++++ + ++ +N FD + + Sbjct: 57 GITPDQVADAP-----FFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLYRLELPDA 111 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 + + + + R +Y + +L D+ GI+ + HDA +D Sbjct: 112 PY------FCTVKLSRKVYPYLKH-------------HRLNDVCDYMGIQLDH-HDAGSD 151 Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216 +V + + K++D Sbjct: 152 ARGCALIVANTMNLMQIYEPLELAQTCQIPVNKILD 187 >gi|296420326|ref|XP_002839726.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635920|emb|CAZ83917.1| unnamed protein product [Tuber melanosporum] Length = 188 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 11/35 (31%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 V D E G D D Q D + ++ Sbjct: 10 LVWIDCEMTGLDPNEDVILQICCYITDHELNLLDE 44 >gi|170590708|ref|XP_001900113.1| exonuclease family protein [Brugia malayi] gi|158592263|gb|EDP30863.1| exonuclease family protein [Brugia malayi] Length = 399 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 10/207 (4%) Query: 7 IYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D+E +F V VD + ++I + +P + TGI Sbjct: 148 VIDFECTCEADLYDYNHEIIEFPAVLVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFTGI 207 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T + + + + + + +G N++R+ F+ Sbjct: 208 TQEMIDKA-LPFIDVLDSFRTWMQLHR---LGQNDMRYAFVTDGPWDIAKFFQMQCIQSK 263 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 D + +F+ + S L L + H D Sbjct: 264 LNTVPHDFRFYINIRRSFANKYCKKYSMQKINLGGMLTFLNMKF---EGREHSGLDDSKN 320 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210 +V + E + +L R K Sbjct: 321 IARIVIKMLEDRSELRVNEKLVRIKES 347 >gi|289178310|gb|ADC85556.1| Oligoribonuclease [Bifidobacterium animalis subsp. lactis BB-12] Length = 237 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 19/128 (14%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----AVFI- 60 + D E G D+ D + + V D + ++ KP++ + + A+ Sbjct: 38 IWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMHTR 97 Query: 61 --------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G++ Q+A E + + QF ++ N++ D + Sbjct: 98 SGLIDEWENGLSVQEA------ERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPN 151 Query: 113 NFYDSYRW 120 + Sbjct: 152 LMEHLHYR 159 >gi|295698463|ref|YP_003603118.1| oligoribonuclease [Candidatus Riesia pediculicola USDA] gi|291157191|gb|ADD79636.1| oligoribonuclease [Candidatus Riesia pediculicola USDA] Length = 184 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G + D+ + A + D Q + Sbjct: 5 KKNLIWIDLEMTGLNPKRDKIIEIATIITDSQINILSE 42 >gi|328717754|ref|XP_001946025.2| PREDICTED: ERI1 exoribonuclease 3-like [Acyrthosiphon pisum] gi|239793057|dbj|BAH72792.1| ACYPI003543 [Acyrthosiphon pisum] Length = 248 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 56/201 (27%), Gaps = 23/201 (11%) Query: 4 HFVIYDYETF---GRDVALDR-PAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPD 54 F + D+E G + + +F + V +E + + KP + Sbjct: 48 KFFVLDFEATCDNGAHLLKPQEIIEFPCILVKFNMAKGGFEVVSIFHS-YVKPIIHTVLT 106 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +TG+T + FF+ N ++N + ++I + Sbjct: 107 EYCTQLTGVTQDMVSNSP-PFDDV------FFNFCN-----WHNDHTNMGKEKSIIVTSG 154 Query: 115 YDSYRWSWDNGNSRWD-LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + + + + + + + L N + N Sbjct: 155 NWDIGNMFIEQCKLFPSTIKIPEFMCTWINIKKLFALTMGEYPLGIKSMLKTTNSKQFGN 214 Query: 174 AHDAKADVYATLALVWLIREK 194 H D + ++ + ++ Sbjct: 215 IHSGIDDCVNIITIMNQLSQR 235 >gi|317505657|ref|ZP_07963560.1| exonuclease [Prevotella salivae DSM 15606] gi|315663242|gb|EFV03006.1| exonuclease [Prevotella salivae DSM 15606] Length = 175 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 45/175 (25%), Gaps = 29/175 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R ++ P DY + Sbjct: 14 MKDFAAIDFET--ANGKRTSVCSVGVVIV-RNGMIVDRFYSLIH-PEPDY-YTYWNTKMH 68 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E R+I + +N FD+ + + Y+ + Sbjct: 69 GLTQADTNNAP-IFPEVWRKIMPLIDQ---LPLVAHNKAFDE-----SCLKAVFKCYQMT 119 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + LL WP L +A G H Sbjct: 120 YPDYIFHCTLL----------KSRSVWPQ-----GRHNLGIIAARCGYNLTQHHH 159 >gi|83309140|ref|YP_419404.1| inhibitor of the KinA pathway to sporulation [Magnetospirillum magneticum AMB-1] gi|82943981|dbj|BAE48845.1| Inhibitor of the KinA pathway to sporulation [Magnetospirillum magneticum AMB-1] Length = 188 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 15/90 (16%) Query: 6 VIYDYE-TF--GRD------VALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 V+YD E T G R Q VR+D E KP + Sbjct: 8 VVYDLEYTTWEGARERRWSGPGEHREVVQVGAVRLDDGAE-----LSLLVKPRLNPGLST 62 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQF 85 +TGIT + R G+ E R+ F Sbjct: 63 YFTDLTGITQDQVDRAGMDFPEALCRLADF 92 >gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 279 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 54/205 (26%), Gaps = 37/205 (18%) Query: 5 FVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 F+ D ET Q V E ++ E + +P + I GI Sbjct: 6 FIAIDVETATSAKPRF--ICQIGLAYV-LDGEIVKK-ESYLVQP-PHNHIEYRNTMIHGI 60 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +I + +N +FD+ + + S+ Sbjct: 61 YESDTAQAP-TLPQVWEKIGFDLRYNQ---LVAHNAKFDEAVIAENLFHFRIPNNLRSF- 115 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +++ L+DL A I + N HDA D Sbjct: 116 -----ICTYELLH---------------------LGLEDLCYAYQIAYTNHHDACFDAAC 149 Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208 ++ F + + K Sbjct: 150 CAQFYINYQQGLHPQFSRIPQQKKK 174 >gi|307177230|gb|EFN66425.1| DNA polymerase III polC-type [Camponotus floridanus] Length = 141 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 24/113 (21%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG--- 62 V++D ET GR D Q A + VF D A I G Sbjct: 41 VVFDLETSGRKKNSD-ILQLAAIV---------QENVFSVYVTPTQDVDKFASEINGLHN 90 Query: 63 ------ITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYS 106 + +K L + + + + F CI+ +N FD + Sbjct: 91 IGRELYLRNEKLLT--LSMVDALQAFYAFLCKVGKSKKCILIAHNASFDISFF 141 >gi|222111865|ref|YP_002554129.1| oligoribonuclease [Acidovorax ebreus TPSY] gi|221731309|gb|ACM34129.1| Exonuclease RNase T and DNA polymerase III [Acidovorax ebreus TPSY] Length = 192 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 21/132 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59 + V D E G + +R + A V + + +AV Sbjct: 17 QNLVWLDCEMSGLNPETERLLEIAVVVTSADL-------TLRVEGPVFAIHQADAVLDGM 69 Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108 G + K + EA+ R + F S + N+I D + Sbjct: 70 DAWNKGTHGRSGLIDKVRASTITEADAERELLAFLSRYVPKGVVPMCGNSIGQDRRFLVK 129 Query: 109 IFYRNFYDSYRW 120 + + Sbjct: 130 YMPKLEAFFHYR 141 >gi|83649263|ref|YP_437698.1| hypothetical protein HCH_06640 [Hahella chejuensis KCTC 2396] gi|83637306|gb|ABC33273.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396] Length = 182 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITGITP 65 D+E D+ P + D + + +PA EA I GIT Sbjct: 25 FIDFEASSLDLICSYPIEVGVCLPD------GAIHSWLLRPAPLWTDWSEEACAIHGITR 78 Query: 66 QKALRDGVVEAEFSRRIHQFF 86 Q+ +GV + + +++ Sbjct: 79 QQLQEEGVNIVDVAHALNELL 99 >gi|302383989|ref|YP_003819812.1| exonuclease RNase T and DNA polymerase III [Brevundimonas subvibrioides ATCC 15264] gi|302194617|gb|ADL02189.1| Exonuclease RNase T and DNA polymerase III [Brevundimonas subvibrioides ATCC 15264] Length = 252 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 41/185 (22%), Gaps = 26/185 (14%) Query: 7 IYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D ET G + V + S E + P+ + + I Sbjct: 11 VVDLETAGT--GQSDVCEIGWQDVVLGGDGRWSLSAERGARWVNPGHPISPDTMAVHHIL 68 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + + + + + + + F+ Y Sbjct: 69 DEWVADAPY-WKDVAPAVLR--PDGGVVALAAHRASFEQRYCSPRL------------TG 113 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G I+ R + L G+ AH A D Y T Sbjct: 114 GAEWICTWKCALRIWPDLSRFSNQMLRYQRRP----EGLVHEMGLP---AHRALPDAYVT 166 Query: 185 LALVW 189 + Sbjct: 167 AHHLR 171 >gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] Length = 289 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 29/191 (15%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 + D+ET + D + + E +P + P + + GI Sbjct: 2 TVLALDFET--ANERRDSACAVGLAWI-ADGRVVRR-ESHLIRP-PEMRFAPGNIRVHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 P +F+ + + +I +N FD R R Sbjct: 57 LPADVADKP----DFAAVMAPYLGDLARGLILAHNASFDIGVLRAGLTRAGLP------- 105 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 L ++ L +A GI + HDA D YA Sbjct: 106 --VPDLAYLCTVQVSRRVF----------PAPEGCGLGKVARRLGIRFEH-HDAGEDAYA 152 Query: 184 TLALVWLIREK 194 + + Sbjct: 153 CAEIALAAMRE 163 >gi|195503017|ref|XP_002098476.1| GE23924 [Drosophila yakuba] gi|194184577|gb|EDW98188.1| GE23924 [Drosophila yakuba] Length = 184 Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 13/35 (37%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 V D E G D+ D+ + + + D+ Sbjct: 11 IVWMDLEMTGLDIEKDKILEVSCIITDKDLNVKSE 45 >gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 196 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 44/170 (25%), Gaps = 29/170 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + + E +P D + I Sbjct: 1 MKTIAI-DFET--ANEQRGSACSVGLAWI-EDGRVT-RVEERLIRPR-DMRFSGMNIAIH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E + F + +N FD +R D YR S Sbjct: 55 GIRPEHVEDAPE-FPEVMDEFEEDFR---GATMIAHNAAFDFSV-----WRASLDLYRQS 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + + WP S +L +A G+ Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 141 >gi|291002083|ref|XP_002683608.1| exonuclease family protein [Naegleria gruberi] gi|284097237|gb|EFC50864.1| exonuclease family protein [Naegleria gruberi] Length = 366 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 51/197 (25%), Gaps = 19/197 (9%) Query: 5 FVIYDYETF---GRDV----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 VI D+E G + +F V D ++ E ++ KP P Sbjct: 135 LVIIDFEATCDNGVNPVITRDNQEMIEFPFVVFDLASMEVIHKERYYVKPTWSDKLTPFC 194 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGIT + ++G+ + + H + T + + + + Sbjct: 195 TQLTGITDEILEKEGISLSNAIQNFHNYVKKTFTDGKTF------CILTDSEWDIKGLLI 248 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 + R Y + + + D + H Sbjct: 249 KEATTKG----ISFDSYFRTFYDLRKEYSKCYPYAFVRGLKSMVDQSGL--SFVGQHHSG 302 Query: 178 KADVYATLALVWLIREK 194 D +V + Sbjct: 303 LCDCLTISEIVKRMIYD 319 >gi|146087811|ref|XP_001465911.1| phosphotransferase [Leishmania infantum JPCM5] gi|134070012|emb|CAM68342.1| putative phosphotransferase [Leishmania infantum JPCM5] Length = 570 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 17/214 (7%) Query: 3 NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 + +V+ D+E R +A +F + VD R + + + +P + + Sbjct: 56 DAYVVLDFEATCEADRRIADAEVIEFPMILVDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFY 111 +TGIT QF + +D Sbjct: 115 ELTGITQDMVSGRD-PFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQM 173 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R RW L + F + S + D+ G+ Sbjct: 174 RVSGQQGT---PLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPS-GMPDMLQMLGLPL 229 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 H + D L V ++ + + + Sbjct: 230 QGRHHSGIDDCRNLTAVLCALLRRGLVIDVTFST 263 >gi|322499398|emb|CBZ34471.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 570 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 17/214 (7%) Query: 3 NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 + +V+ D+E R +A +F + VD R + + + +P + + Sbjct: 56 DAYVVLDFEATCEEDRRIADAEVIEFPMILVDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFY 111 +TGIT QF + +D Sbjct: 115 ELTGITQDMVSGRD-PFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQM 173 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 R RW L + F + S + D+ G+ Sbjct: 174 RVSGQQGT---PLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPS-GMPDMLQMLGLPL 229 Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205 H + D L V ++ + + + Sbjct: 230 QGRHHSGIDDCRNLTAVLCALLRRGLVIDVTFST 263 >gi|317124466|ref|YP_004098578.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] gi|315588554|gb|ADU47851.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] Length = 211 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 11/113 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59 ++ + D E G + D + A + D + + +P L D Sbjct: 14 SDRIIWIDCEMTGLSLRTDALVEVAALVTDFELTVLGEGVDVVIRPPAAALDQMDEFVRD 73 Query: 60 IT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYY 105 + G+ + L GV E + F P +G N++ D + Sbjct: 74 MHTTSGLLDE--LDGGVTLEEAQSLVLDYVRSFVPEPRKAPLGGNSVATDRGF 124 >gi|330984124|gb|EGH82227.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas syringae pv. lachrymans str. M301315] Length = 206 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 3/97 (3%) Query: 21 RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 + +D + E + + V KP + +T IT + + E Sbjct: 41 EVIEIGLAAIDMEKLEIVGTHSVLI-KPEHHPVLSEFCTSLTTITNEMLECAPL-FPEGL 98 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 + + S N + FD ++ ++ +R + Sbjct: 99 DQAMGWLSKFNEDYAWCSWGMFDLHHLQHESHRKGVE 135 >gi|296221910|ref|XP_002756956.1| PREDICTED: 3'-5' exoribonuclease 1-like [Callithrix jacchus] Length = 348 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 129 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTRLSDFCISL 188 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R +++ + + + + + + R Sbjct: 189 TGITQDQVDRAD-TFPHVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQISRI 247 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y S+ W N + + V R+ + + DG L D Sbjct: 248 KYPSFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMDYDGRPHCGLDD 297 >gi|227488247|ref|ZP_03918563.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091817|gb|EEI27129.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867] Length = 203 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 11/154 (7%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55 M+N V D E G D + A D + +D L D Sbjct: 1 MSNKDNRIVWIDLEMTGLDPKRHVIVEAAVHITDNDLTILGDGLDLVIHATEDELKEMDE 60 Query: 56 EAVFIT---GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIF 110 + G+ + + AE ++I + + N+I D + R Sbjct: 61 VVTKMHTSNGLIDE-IRESPLSCAEAEKQIIAYIDEHCDGHPPLAGNSIATDRSFIREYM 119 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD 144 + D + + M IY+ P+ Sbjct: 120 PDLDQRLHYRMIDVSSLKVLARKWMPTIYSHQPE 153 >gi|194910229|ref|XP_001982095.1| GG12405 [Drosophila erecta] gi|190656733|gb|EDV53965.1| GG12405 [Drosophila erecta] Length = 184 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 14/39 (35%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43 V D E G D+ D+ + + + D+ F Sbjct: 11 IVWMDLEMTGLDIEKDKILEVSCIITDKDLNVKSEATCF 49 >gi|149924278|ref|ZP_01912650.1| oligoribonuclease [Plesiocystis pacifica SIR-1] gi|149814858|gb|EDM74424.1| oligoribonuclease [Plesiocystis pacifica SIR-1] Length = 179 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 48/182 (26%), Gaps = 18/182 (9%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59 H + D E G D + + A + + + E I D L +A Sbjct: 5 QPHLIWLDMEMTGLDPEREVILEVATLVTNAELEIIAEGPDLVVHHGDAVLDGMDAWCTE 64 Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114 G + Q + AE + F P + N+I D + Sbjct: 65 HHGASGLTQAVRESSISLAEAEAQTLDFLRQHCEPGKSPLCGNSIGQDRRFIVR------ 118 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVN 173 +G + +DV P + L D+ + G H Sbjct: 119 ----YMPALDGFLHYRSVDVSSIKELARRWYPDLPGFEKSEAHRALDDIRESIGELRHYR 174 Query: 174 AH 175 H Sbjct: 175 RH 176 >gi|121595648|ref|YP_987544.1| oligoribonuclease [Acidovorax sp. JS42] gi|166215746|sp|A1WB43|ORN_ACISJ RecName: Full=Oligoribonuclease gi|120607728|gb|ABM43468.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] Length = 192 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 21/132 (15%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59 + V D E G + +R + A V + + +AV Sbjct: 17 QNLVWLDCEMSGLNPETERLLEIAVVVTSADL-------TLRVEGPVFAIHQADAVLDGM 69 Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108 G + K V EA+ R + F S + N+I D + Sbjct: 70 DAWNKGTHGRSGLIDKVRASTVTEADAERELLAFLSRYVPKGVVPMCGNSIGQDRRFLVK 129 Query: 109 IFYRNFYDSYRW 120 + + Sbjct: 130 YMPKLEAFFHYR 141 >gi|39945028|ref|XP_362051.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15] gi|145011396|gb|EDJ96052.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15] Length = 223 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 17/129 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYLPDP 55 V D E G + + + + D + T+ K + Sbjct: 8 LVWIDCEMTGLNPDSEEIIEIFCLVTDGDLNLKDEEGWGTVVHQTQERMDKMDEWCTKQH 67 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111 +T + + E + + + ++ +++ D + R Y Sbjct: 68 GGSGLT----ARVVGSTTTPEEAADGLLAYIKKHVPHAGVALLAGSSVHHDRAFLRRAPY 123 Query: 112 RNFYDSYRW 120 D + Sbjct: 124 NRVTDHLHY 132 >gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 234 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 66/233 (28%), Gaps = 17/233 (7%) Query: 1 MTNH---FVIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53 M N+ ++ D ET G + L+ G + KP L Sbjct: 1 MMNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN--RLI 58 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 + +A I GIT + ++ + I +N FD + F Sbjct: 59 ESDASKIHGITDDFLSDKP-SFKDIAKDFFNYIKNSELII---HNASFDVGFINQEFSML 114 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHV 172 S N + D L + R ++ + R S ++ A+ + Sbjct: 115 TKKIQDIS--NFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLG 172 Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + ++ I+ + K++ K+I +H Sbjct: 173 KLYLLMTSGQESIIFNKNIQNE-RNFRYIKKSITKKHRFLKIIKANKTELKLH 224 >gi|326428201|gb|EGD73771.1| hypothetical protein PTSG_05464 [Salpingoeca sp. ATCC 50818] Length = 1104 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 42/411 (10%), Positives = 97/411 (23%), Gaps = 23/411 (5%) Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 ++ + F + + + + N + ++ Sbjct: 81 EELMNTLQPHYYNLVDAMDFQDRVKEVVASMSACQMRLQLNLNYRLTALFLDLLHTYVAV 140 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 LD R I + +L L L + + Sbjct: 141 ILLLFRLDSRRMIAMVFNATYSMFKGNMEPAYPRLSQLLLDYDTPARVMYAPFKPHINMI 200 Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245 + D K L + + P ++ Sbjct: 201 LTPLMSVRAHLDTMYQTADEFRKAHLLNIANN----PAKMTEPEHMYD-----VLPFTTS 251 Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD-ELKGLVPVPIKEVHLNKCPILM 304 R ++ L + +D + + + L +L + L Sbjct: 252 TDRMIHWLVFGYLLIPNALAEDESMMTMLRCLGDGFVLQLYRTEVAYPHTLLDTTLASLA 311 Query: 305 PIDYCKKEHFERWGIDHKRCLE----NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360 K+ + E + + + A+ + L Sbjct: 312 DAKKMSKQKAQVAEQLAAAITEAPTLHRDRRTYLRHSLAQLLALVQDKPGLLGPKMPVVL 371 Query: 361 YDGFFADVDRQI-MDRILRTAPEQLSTLNLP-FSDRRLPELFFRYRARNFPHTLSEKEKQ 418 A + M P+ + +N F D+ L EL F N+ L + ++ Sbjct: 372 RGLVMARDEVNWLMRHAHAQPPKAKAKVNPKVFQDKDLSELLFYITEFNY---LLKGQRA 428 Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469 + K LT + + + +L E + ++N + L+ + Sbjct: 429 IISRYFKDFLTGHNLTVIRETIGAL----HLSEHEHKILNGFAQTLEALAS 475 >gi|62079013|ref|NP_001014165.1| 3'-5' exoribonuclease 1 [Rattus norvegicus] gi|78098993|sp|Q5FVR4|ERI1_RAT RecName: Full=3'-5' exoribonuclease 1; AltName: Full=Histone mRNA 3'-exonuclease 1 gi|58476450|gb|AAH89828.1| Three prime histone mRNA exonuclease 1 [Rattus norvegicus] gi|149057952|gb|EDM09195.1| three prime histone mRNA exonuclease 1 [Rattus norvegicus] Length = 345 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCIGL 185 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ ++ + + + R Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLSRL 244 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y S+ W N + + V R+ + + DG L D Sbjct: 245 KYPSFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294 >gi|258563774|ref|XP_002582632.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237908139|gb|EEP82540.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 174 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 11/118 (9%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----DPEAVFITGIT--PQ 66 G D D Q + D + + F +P + G + Sbjct: 2 TGLDPETDHILQISCFLTDADLALL-EPDGFHVTIHQPQHILSSMNPWCISTHGRSGLTA 60 Query: 67 KALRDGVVEAEFSRRIHQFFS----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 L +E S + + P T ++ N++ D + Y+ D + Sbjct: 61 AVLASTTSPSEASEALLAYVQTYVPEPRTALLAGNSVHADRAFLAREPYKKVVDWLHY 118 >gi|159489154|ref|XP_001702562.1| predicted protein [Chlamydomonas reinhardtii] gi|158280584|gb|EDP06341.1| predicted protein [Chlamydomonas reinhardtii] Length = 180 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 15/119 (12%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPE 56 V D E G D+ D + A + D + E+ I ++ D Sbjct: 1 LVWVDLEMTGLDIEKDTIIEMACIITDGELERSVQGPATAIHHSDAVLEGMNDWCKEHHG 60 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112 A +T Q+ V + + F + + N++ D + R Sbjct: 61 ASGLT----QRVRDSRVDMGAAEQMLLDFIAEHTEEGMAQLAGNSVHVDRIFLLKHMPR 115 >gi|153870628|ref|ZP_01999989.1| ribonuclease T [Beggiatoa sp. PS] gi|152072905|gb|EDN70010.1| ribonuclease T [Beggiatoa sp. PS] Length = 212 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 53/197 (26%), Gaps = 27/197 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A V + E + P + D +A+ G Sbjct: 19 VVVDVETAGFNPERDALLEIAAVILQINEEGLWQPHQTHFSHIVPFEGANLDKQALEFIG 78 Query: 63 ITPQKALRDGVVEAE----FSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116 + P R EAE + I + + ++ +N FD + R Sbjct: 79 VDPFHPFRFAKQEAEGLETVFKPIRKAVKIYGCTRAVLVGHNPSFDLSFINAASERTGV- 137 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + R+ D + + A AH Sbjct: 138 ------KSPFHRFSTFDTATLAGLVYGQTVLARAVQ-----------AAGFEWNTSEAHA 180 Query: 177 AKADVYATLALVWLIRE 193 A D T L I Sbjct: 181 AIYDAQRTADLFCTIVN 197 >gi|115715567|ref|XP_001183444.1| PREDICTED: similar to three prime repair exonuclease 1, putative [Strongylocentrotus purpuratus] Length = 424 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 36/143 (25%) Query: 3 NHFVIYDYETFG-RDVALDRPAQFAGVRVDRQW--------------------------- 34 N FV D+ET + + + + V+R Sbjct: 10 NSFVFLDFETSHLLSKDHPKIIELSLIAVNRNGLLNSDVHTSLNCARKGNFTFDLSKVSL 69 Query: 35 -EKIESTEVFFCKPADDYLPDPEAVFITGITPQKA-LRDGVVEAE-FSRRIHQFFSV--P 89 I+ P P++ IT + + + E I F S Sbjct: 70 PRIIDK-LTLCVDPRKST--SPQSARITKLDKRNLDKNKKLPFDEDVICMIKLFLSRQEA 126 Query: 90 NTCIIGYNNIRFDDYYSRNIFYR 112 C++ +N +RFD R+ R Sbjct: 127 PVCLVAHNGLRFDFAILRSELSR 149 >gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047] Length = 212 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 25/166 (15%) Query: 36 KIESTEV---FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92 I+ + + D A + GIT V A+ + F Sbjct: 3 VIDRKLTGRHYHQYINPERDIDDGAAEVHGITSDFLADKPV-FADIANEFLAFIKGAE-- 59 Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152 + +N FD + + + + D++D + P Sbjct: 60 -LVIHNAPFDVGFIDHE-----FRLLNQGHPKTSEICDIIDTIVMARKKHPGQKN----- 108 Query: 153 DGATSFKLQDLALANGIEHV--NAHDAKADVYATLALVWLIREKKP 196 L L G+++ + H A D + L+ + Sbjct: 109 ------NLDALCKRYGVDNSARDLHGALLDAEILADVYLLMTGGQT 148 >gi|146302457|ref|YP_001197048.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146156875|gb|ABQ07729.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 181 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 7/133 (5%) Query: 2 TNHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 T+ +I D E G + + +D Q +I + KP + P Sbjct: 4 TDKIIIIDLEATCWQGVVPKGQQNEIIEIGLAVLDSQTGEITKNKGILIKPQRSTV-SPF 62 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +T IT ++GV E + ++ P+ + ++ Sbjct: 63 CTELTTITQDLLDKNGVSFEEAVNLLIDEYN-PDLYTWASYGQYDLNMLTKQCKSFGIPY 121 Query: 117 SYRWSWDNGNSRW 129 N + Sbjct: 122 PMGEEHINVKEHF 134 >gi|284990013|ref|YP_003408567.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus obscurus DSM 43160] gi|284063258|gb|ADB74196.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus obscurus DSM 43160] Length = 225 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 23/163 (14%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57 M + V D E G D+ D+ + A + D + ++ ADD + Sbjct: 1 MADSAGHLVWIDCEMTGLDLTRDKLIEVAVLVTDSELNVLDPGLDLVIS-ADDAALEGMV 59 Query: 58 VFITGITPQKALRDGVVEA-------------EFSRRIHQFFSVPNTCIIGYNNIRFDDY 104 +T + + G+ EA + + +F T + N+I D Sbjct: 60 EVVT----EMHAKSGLTEAVRASTLTVAEAEQQLLAYVKRFVPERRTAPLCGNSIGTDRG 115 Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147 + D + S L + + Sbjct: 116 FL--ARDMPELDDHLHYRMIDVSSVKELARRWFPRVYFAQPQK 156 >gi|167945402|ref|ZP_02532476.1| exonuclase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 168 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 12/150 (8%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72 G D V + +++ + + +P+ AV I IT A G Sbjct: 6 TGLKPKQDSILSIGLVNIRALQIHLDTAWHRVIRV-EQQIPESSAV-IHQITDDHAA-AG 62 Query: 73 VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132 + E ++ + S ++ + + + R + + D L Sbjct: 63 IPLEEALPQLLRQLS---GKVMLAHYKSIEQNFLDAACQRLYGTPFII------PIIDTL 113 Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 ++ + ++A IQ + LQ Sbjct: 114 ELAQRLFAQRNHSIQPGDLRLFQPTATLQS 143 >gi|260904928|ref|ZP_05913250.1| oligoribonuclease [Brevibacterium linens BL2] Length = 189 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT---GITPQK 67 G D D + A V D ++ KP+ L + + G+ + Sbjct: 2 TGLDEVRDELIEVAAVITDFDLNPLDEGIDIVIKPSAAALENMNDFVTKMHTSSGLITE- 60 Query: 68 ALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110 L G AE ++ ++ +G N++ D + Sbjct: 61 -LDAGTTVAEAQTQVLEYIKKHVPEAGKAPLGGNSVGTDKVFLNKQM 106 >gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] Length = 178 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 30/192 (15%) Query: 4 HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +FV D+ET G+ + + + R + + V I G Sbjct: 2 NFVAMDFETANGKRYSACSL----ALTIVRDSKIADEFYTL---INPQTDFFWRNVQIHG 54 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I + E + I QF ++ +N FD+ +N Sbjct: 55 IHEEDVQDAP-TFPEVWQHIKQF--YRPEQLVIAHNNSFDNSVLKNTLLHYGIQP----- 106 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 + LD +++ P ++L + A I+ + H+A D Sbjct: 107 ----PTFQTLDTVKSSRRLIPGLDN----------YRLNTVCDALQIDLHHHHNALDDAQ 152 Query: 183 ATLALVWLIREK 194 A ++ + Sbjct: 153 ACANILLYEAQH 164 >gi|170094696|ref|XP_001878569.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647023|gb|EDR11268.1| predicted protein [Laccaria bicolor S238N-H82] Length = 284 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 16/102 (15%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGV------RVDRQW----EKIESTEVFFCKPADD 50 F++ D E G D + +F R D + E ++ + KP Sbjct: 40 FLVLDIEGTCDQGTDFNYPNEIIEFPVCLMRWKNRTDDDFCSELEVVDEFRT-YVKPKWR 98 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92 +TGIT + + + + +F + Sbjct: 99 PTLSKFCTELTGITQAQVDDAPL-FPDVLVDLEKFLAKHGLI 139 >gi|66472468|ref|NP_001018476.1| ERI1 exoribonuclease 2 [Danio rerio] gi|82228769|sp|Q502M8|ERI2_DANRE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease domain-containing protein 1 gi|63100865|gb|AAH95637.1| Zgc:111991 [Danio rerio] Length = 555 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 48/198 (24%), Gaps = 12/198 (6%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60 +I D+E+ + + +F V + + +P + + + Sbjct: 35 LIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHS-YVQPQERPVLSAFCTEL 93 Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 TGIT + + + FSR + + ++ + +D Sbjct: 94 TGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWSDWDL 153 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVNAHD 176 + + + + L DL + H Sbjct: 154 GVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIEF---TGREHS 210 Query: 177 AKADVYATLALVWLIREK 194 D T L + Sbjct: 211 GLVDARNTALLAQRMMTD 228 >gi|115379892|ref|ZP_01466953.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1] gi|310817667|ref|YP_003950025.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1] gi|115363108|gb|EAU62282.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1] gi|309390739|gb|ADO68198.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1] Length = 802 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 29/110 (26%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 +D ET G + DR V P PE + G Sbjct: 161 FDLETTGLEPDHDRI-----------------FLVALRTPEG----QPETLEAHG----- 194 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYD 116 EAE +R+ + +I +N FD + + R Sbjct: 195 --DSDAAEAELLQRLAARIRACDPDVIENHNLHGFDLPFLAHRAKRLGVP 242 >gi|198274893|ref|ZP_03207425.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135] gi|198272340|gb|EDY96609.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135] Length = 163 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 25/160 (15%) Query: 32 RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 R E ++ P +Y + G+T + V +I Sbjct: 28 RNGEIADTFYSLI-NPEPNY-YTYWCSQVHGLTREDTEDAPV-FPAVWAQIEPLIE---G 81 Query: 92 CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 + +N FD+ + +F D + + +D L V R ++ Sbjct: 82 LPLVAHNRPFDESCLKAVFRVYQMDYPDYEF------YDTLCVARRVF------------ 123 Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191 + +L +A A G N H A AD A + I Sbjct: 124 -PELPNHQLHTVAAACGYRLENHHHALADAEACAWIAREI 162 >gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola] Length = 179 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 14/151 (9%) Query: 1 MTNH--FVIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N ++ D ET G + L+ G + KP L + Sbjct: 1 MNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN--RLIE 58 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GIT + ++ + I +N FD + F Sbjct: 59 SDASKIHGITDDFLSDKP-SFKDIAKDFFNYIKNSELII---HNASFDVGFINQEFSMLT 114 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145 S N + D L + R ++ + Sbjct: 115 KKIQDIS--NFCNIIDTLKIARKLFPGKKNT 143 >gi|156052617|ref|XP_001592235.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980] gi|154704254|gb|EDO03993.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980 UF-70] Length = 190 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 14/35 (40%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 V D E G D+ D + + + + E ++ Sbjct: 10 LVWIDCEMTGLDIEKDVIIEISCIITNGNLEILDK 44 >gi|227542846|ref|ZP_03972895.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866] gi|227181351|gb|EEI62323.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866] Length = 203 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 11/154 (7%) Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55 M+N V D E G D + A D + +D L D Sbjct: 1 MSNKDNRIVWIDLEMTGLDPKRHVIVEAAVHITDNDLTILGDGLDLVIHATEDELKEMDE 60 Query: 56 EAVFIT---GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIF 110 + G+ + + AE ++I + + N+I D + R Sbjct: 61 VVTKMHTSNGLIDE-IRESPLSCAEAEKQIIAYIDEHCDGHPPLAGNSIATDRSFIREYM 119 Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD 144 + D + + M IY+ P+ Sbjct: 120 PDLDQRLHYRMIDVSSLKVLARKWMPTIYSHQPE 153 >gi|268578587|ref|XP_002644276.1| Hypothetical protein CBG14047 [Caenorhabditis briggsae] Length = 292 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 14/200 (7%) Query: 1 MTNHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDP 55 M +I D+ET D QF+ V D + + I F F +P + + Sbjct: 1 MQTRVIILDFETTSEGETHDYPFEVIQFSVVPYDVKAKTILEGHAFNKFVRPVVNPVLSK 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 TGI + ++ ++ SR +R Sbjct: 61 HCTEFTGIKQESLNAAD-TFLVVYKQFLKWLQKNG----FQERHFAIVSDSRQDMWRIAQ 115 Query: 116 DSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 +R + S + +++ R DG + L L + A Sbjct: 116 YQFRLVQETMPSMFRQWINIKRTFDDGLEDGQKNKLVGRSNMEKMLNYLGIEFS---GRA 172 Query: 175 HDAKADVYATLALVWLIREK 194 HDA +D A+ I E Sbjct: 173 HDALSDCLTLAAITQKILEM 192 >gi|293189781|ref|ZP_06608496.1| oligoribonuclease [Actinomyces odontolyticus F0309] gi|292821288|gb|EFF80232.1| oligoribonuclease [Actinomyces odontolyticus F0309] Length = 198 Score = 47.5 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 24/114 (21%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP------- 65 G DV D + A V D ++ P D L P A + + Sbjct: 2 TGLDVQRDALIEVAVVVTDGDLTIVD--------PGMDVLITPPAEALDNMNDFVRNMHT 53 Query: 66 -----QKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 G+ E + + I +F ++ N++ D + Sbjct: 54 SSGLLDDLQTSGLSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFLEANM 107 >gi|304360909|ref|YP_003857029.1| gp57 [Mycobacterium phage CrimD] gi|302858658|gb|ADL71403.1| gp57 [Mycobacterium phage CrimD] Length = 184 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 21/198 (10%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 M ++ D ET D P + A + VD V + DP+A+ I Sbjct: 1 MARKLIVVDLETTSLDYDTAAPLEVALLNVDTGASLRFVPHVTCEQL---GAADPKAMEI 57 Query: 61 TGITPQKALRDGVVEAE---FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G + R+ + E + + + G N +R F Sbjct: 58 NGYYERGVWREALDERQTAVAWSEVQDWLR--GNTFAGSNPAFDSTIVARQRAGCMFTSP 115 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 W L D+ D A L D+A G++ H A Sbjct: 116 VGRVW-----HHRLADLAAYSAGKL--------DRDPAELVGLDDVAERLGVQVAQRHTA 162 Query: 178 KADVYATLALVWLIREKK 195 D AT ++R Sbjct: 163 IGDAAATGLCFDVLRNTA 180 >gi|55670498|pdb|1W0H|A Chain A, Crystallographic Structure Of The Nuclease Domain Of 3'hexo, A Deddh Family Member, Bound To Ramp Length = 204 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 12 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 71 Query: 61 TGITPQKALRDGVVEAEFSRRIHQF--FSVPNT-----CIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + T + + + R Sbjct: 72 TGITQDQVDRAD-TFPQVLKKVIDWXKLKELGTKYKYSLLTDGSWDXSKFLNIQCQLSRL 130 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R+ + + DG L D Sbjct: 131 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXLEKLGXDYDGRPHCGLDD 180 >gi|171463904|ref|YP_001798017.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193442|gb|ACB44403.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 198 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 7/125 (5%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60 H + D E G + +R + A + D I + V+ + L +A Sbjct: 20 EHLIWVDMEMSGLNPETERILEIAIIVTDAHLNTIATAPVWVMHQENAVLDAMDAWNKGT 79 Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G + K + EA F + N I D + + Sbjct: 80 HGRSGLIDKVKASTLDEAAVEAECIAFLKKYIKAGIAPMCGNTIGQDRRFMAKYMSKLES 139 Query: 116 DSYRW 120 + Sbjct: 140 YFHYR 144 >gi|315613078|ref|ZP_07887989.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sanguinis ATCC 49296] gi|315315188|gb|EFU63229.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sanguinis ATCC 49296] Length = 197 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 36/196 (18%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E + Q + VR + ++ + + + A +TG Sbjct: 7 YIAFDLE---FNQHEGVTHLIQVSAVRF-QDGQECAAFDSYVYTTAPLKS---FINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF--YRNFYDSYRW 120 IT + VE + + F I+GYN + D YR+ Y + Sbjct: 60 ITAETLKDAPKVE-QVLKNFQAFVGDLP--IVGYNAAKSDLPILLEHGIDYRDQYKVDLY 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL + + KLQ +A G H +H++ D Sbjct: 117 EEAFERRSSDLHGIA---------------------NLKLQTVANFLGF-HGKSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYEAFLESDE 170 >gi|307205735|gb|EFN83972.1| Three prime repair exonuclease 2 [Harpegnathos saltator] Length = 136 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 11/120 (9%) Query: 4 HFVIYDYETFGR--DVALDRPAQFAGVRVDRQWEKIESTEV-------FFCKPADDYLPD 54 FV +D ET G + + A V V R+ + Sbjct: 9 SFVFFDLETTGIFEGTVAPKITEMALVAVARESIRHNEQNSLPRILHKLILPINPQKTIP 68 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112 ++T + E E I F + P C + +N +FD + Sbjct: 69 TRIQYMTKLYNDDMELLKPFEFEIYELIVAFLNRLRPPICFVAHNGDKFDFPVLLSELKC 128 >gi|300115276|ref|YP_003761851.1| exonuclease RNase T and DNA polymerase III [Nitrosococcus watsonii C-113] gi|299541213|gb|ADJ29530.1| Exonuclease RNase T and DNA polymerase III [Nitrosococcus watsonii C-113] Length = 183 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 +++ + D E G + D + A V D Q IE Sbjct: 5 SSNLIWLDLEMSGLNTTQDVILEIATVVTDSQLNVIEE 42 >gi|158337902|ref|YP_001519078.1| exonuclease [Acaryochloris marina MBIC11017] gi|158308143|gb|ABW29760.1| exonuclease [Acaryochloris marina MBIC11017] Length = 183 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 6/130 (4%) Query: 5 FVIYDYETF-----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 ++I D E + V ++ Q +IES F KP + Sbjct: 8 YLIVDLEATCADDNSIPRRRMEMIEIGAVLLNSQTLQIESEYQTFIKPILHPVLTEFCKS 67 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I+ Q + + + +F + + + ++ + Sbjct: 68 LTSISQQDIEKAPL-FPAALKDFQSWFYPCGSYLFCSWGDYDRHQFVQDCQMHGVGYPFP 126 Query: 120 WSWDNGNSRW 129 N + Sbjct: 127 GDHLNLKRAF 136 >gi|332304985|ref|YP_004432836.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172314|gb|AEE21568.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 224 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 30/205 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59 F+ D E D++ R V + + ++IE F+ + A Sbjct: 29 FLCIDLELTSLDLSATRILSIGWV--EGKGKQIELQSCFY------QVVSTTASLNQSPV 80 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I G+T + G + ++ + ++ D +F + Sbjct: 81 IHGLTAEDIA-QGQP---VRVALEALVKYASSHVWVFHCTGLDMTVLNGVFKKLNIP--- 133 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + + + + L + V AH+A Sbjct: 134 ---------LPTVVTLDTLRFGLYQLTKNLRPPPPNAVV-LPVCRARYNLPAVPAHNALD 183 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D ATL L++ +K Sbjct: 184 DAMATLELLFAQIQKFAPKNSDTLK 208 >gi|322492134|emb|CBZ27408.1| putative phosphotransferase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 584 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 6/92 (6%) Query: 3 NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 + +V+ D+E R +A +F V VD R + + + +P + + Sbjct: 56 DAYVVLDFEATCEADRRIADAEVIEFPMVLVDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90 +TGIT QF + Sbjct: 115 ELTGITQDMVRGRD-PFPMVYCEALQFLAEAG 145 >gi|229104066|ref|ZP_04234741.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus Rock3-28] gi|228679346|gb|EEL33548.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus Rock3-28] Length = 273 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 59/222 (26%), Gaps = 24/222 (10%) Query: 21 RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 V++D + I +TGIT + + +F Sbjct: 18 EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIG----VEKFP 70 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + I +F + + + D ++ + + + +SR+DL + Y Sbjct: 71 QIIEKFIQFIGEDSVFISWGKEDYHFLSHDCTLHGLECPCME---KDSRFDLQKFVFQAY 127 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR---EKKP 196 + S + L E H A AD T ++ I + Sbjct: 128 ---------EELFEHTPSLQFAVEQLGLTWE-GKQHRALADAENTANILLKIYSERDINK 177 Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238 + + KN + M V A R Sbjct: 178 RYKRHGELELVKNGKLTEKAKKKMRKWVFKELKKHAERPFVW 219 >gi|32491178|ref|NP_871432.1| oligoribonuclease [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81844446|sp|Q8D2C5|ORN_WIGBR RecName: Full=Oligoribonuclease gi|25166385|dbj|BAC24575.1| yjeR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 186 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 7/126 (5%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60 + + D E G ++ DR + A V D+ + + +++ L + I Sbjct: 9 KKNLIWIDLEMTGLNLENDRIIEIATVITDKYVKILAEGPSIAIFQSEEQLKKMNSWNIF 68 Query: 61 TGITP---QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114 T + + E +F S I ++I D + Sbjct: 69 THTKNGLIDRVRKSKYNEKNAMIDTLKFISSWVPFGKSPICGSSINHDRLFLSKYMPDLE 128 Query: 115 YDSYRW 120 + Sbjct: 129 KYFHYR 134 >gi|93007037|ref|YP_581474.1| exonuclease [Psychrobacter cryohalolentis K5] gi|92394715|gb|ABE75990.1| Exodeoxyribonuclease X [Psychrobacter cryohalolentis K5] Length = 242 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 70/255 (27%), Gaps = 45/255 (17%) Query: 1 MTNHFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 M + +I D ET GRD RP Q A + V +E ++ P + Sbjct: 7 MVDTALIIDTETDQGRDP---RPIQVATINVATGFEWMKYFNS-------GRSISPVVIR 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + GIT G+ E + F +P + +N+RFD Sbjct: 57 VHGITDDDV--AGLERFE-----LEQFELPE--YLIGHNVRFDWRVI------------- 94 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 G+ L+ +R P+ + + + + AHDA Sbjct: 95 -----GSPSAKLICTVRLARVAFPEWSAYGQSKCIEQLLGKGEASRM----TIAAHDALG 145 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239 D L E+ + P GM + + Sbjct: 146 DARMCYLLYQACCERLEIAPTDFAAAHAIANKANPVGKM---PFGKHKGMPIKEVPISYV 202 Query: 240 IAPVAWHPRYKDSVI 254 + + S+ Sbjct: 203 KWMLGNIHNMQPSLY 217 >gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735] gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735] Length = 162 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 29/175 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F D+ET + V V R + + P DY + Sbjct: 1 MKDFAAIDFET--ANNERTSVCSVGLV-VMRDGKIADRFYSLIH-PEPDY-YTYWNTRVH 55 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + E ++ + +N FD+ + +F D +S Sbjct: 56 GLTQADTNHAP-IFPEVWCKVEPLIVN---LPLVAHNKAFDESCLKAVFRCYQMDYPDYS 111 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + + WP L +A G + N H Sbjct: 112 F---------------YCTLAQSRRVWPQGH-----HNLDIIAARCGYDLTNHHH 146 >gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT 652] gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT 652] Length = 196 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 29/170 (17%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 I D+ET + ++ ++ E +P D + I Sbjct: 1 MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ E H+ S + +N FD +R D YR S Sbjct: 55 GIRPEHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQS 105 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + + WP S +L +A G+ Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 141 >gi|328876923|gb|EGG25286.1| hypothetical protein DFA_03535 [Dictyostelium fasciculatum] Length = 369 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 11/101 (10%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +++D ET G + D+ + + I + + F+ K E+ GI+ Sbjct: 143 ILVFDTETTGLE-FEDQIIEI-------TFINILNGDSFYGKVKPTVPLSSESYCAHGIS 194 Query: 65 PQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDD 103 ++ + ++ FF + +I +N+ FD Sbjct: 195 LKELDNC-LEWESLQGKLDSFFQQYIDHKIVIIAHNVTFDR 234 >gi|133910502|emb|CAM00615.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 12/144 (8%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF-IT---GITPQK 67 G D+ D + A + D + D+ L P+ V + G+T ++ Sbjct: 2 TGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVREMHERSGLT-EE 60 Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 R V AE +RI + + N+I D + D++ Sbjct: 61 VRRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFI--ARDMPTLDAHLHYRM 118 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQ 147 S L + + Sbjct: 119 VDVSSIKELCRRWFPRIYYAQPEK 142 >gi|330466087|ref|YP_004403830.1| oligoribonuclease [Verrucosispora maris AB-18-032] gi|328809058|gb|AEB43230.1| oligoribonuclease [Verrucosispora maris AB-18-032] Length = 185 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 10/143 (6%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI-TGIT--PQKA 68 G D+ D+ + A + D + D L PE V G + ++ Sbjct: 2 TGLDLGSDKLIEVAALVTDPDLNVLGDGVDVVIHADDAALDAMPEIVRTMHGKSGLTEEV 61 Query: 69 LRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 R V AE + + P T + N+I D + R D++ Sbjct: 62 RRSTVTLAEAEDMVLDYVSRHVKDPRTAPLCGNSIATDRGFIARDMPR--LDAHLHYRMI 119 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ 147 S L + + Sbjct: 120 DVSSIKELCRRWYPRVYFGQPQK 142 >gi|330800009|ref|XP_003288032.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum] gi|325081920|gb|EGC35419.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum] Length = 231 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 16/194 (8%) Query: 5 FVIYDYETFGRDVALDR------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 ++ D+E D+ +F V V+ + +I ST +CKP Sbjct: 33 LIVLDFEAT---CEKDQKFPNQEIIEFPSVIVNTETLEIVSTFREYCKPLIVPKLTAFCT 89 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGI + + +R +Q+ +I I D + Sbjct: 90 ELTGIKQETVDNADL-FPNVLKRHYQWLEESLPGVIVNGQIINDQICFVTCGDWDLRQCL 148 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD-A 177 + N+ + + + S+ + ++ +E H Sbjct: 149 QKQLKLCNNI-----PTPNYFKKWINIKLQFTDFYSKPSYGMTNMLRELNLELEGRHHCG 203 Query: 178 KADVYATLALVWLI 191 +D +V + Sbjct: 204 LSDSLNIARIVKKM 217 >gi|19920610|ref|NP_608732.1| CG3165 [Drosophila melanogaster] gi|7295872|gb|AAF51172.1| CG3165 [Drosophila melanogaster] gi|17944281|gb|AAL48034.1| LD40940p [Drosophila melanogaster] gi|220955964|gb|ACL90525.1| CG3165-PA [synthetic construct] Length = 351 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 28/138 (20%) Query: 4 HFVIYDYETFGRDVALD---RPAQFAGVRVDRQW--------------------EKIEST 40 F + D ET + + + + Sbjct: 19 TFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVLHKL 78 Query: 41 EVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNN 98 V F + DPEA ITG++ R+ ++ + ++ I F + C++ +N Sbjct: 79 NVLF---QPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135 Query: 99 IRFDDYYSRNIFYRNFYD 116 FD R F + + Sbjct: 136 WGFDFPILRQAFEKLNIE 153 >gi|242078527|ref|XP_002444032.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor] gi|241940382|gb|EES13527.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor] Length = 283 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 10/139 (7%) Query: 1 MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56 M + FV+ D+E G + +F V VD + + + +P Sbjct: 1 MFDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRT-YVRPRHHPRLTDF 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112 +TGIT GV AE ++ + Sbjct: 60 CRDLTGITQGDV-DAGVTLAEALDMHDRWLEAHGAKLGKLAVVTWGDWDCRTMLDRECRF 118 Query: 113 NFYDSYRWSWDNGNSRWDL 131 + + D N R Sbjct: 119 KGIEKPHYFDDWINLRLPF 137 >gi|71755417|ref|XP_828623.1| phosphotransferase [Trypanosoma brucei TREU927] gi|70834009|gb|EAN79511.1| phosphotransferase, putative [Trypanosoma brucei] Length = 540 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 49/198 (24%), Gaps = 15/198 (7%) Query: 3 NHFVIYDYETFGRDVALDR------PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDP 55 + +++ D+E + +F V VD R I + + +P + Sbjct: 32 DTYMVLDFEAT---CERHQRLEVPEVIEFPIVLVDARNGNTISEFQQ-YVRPVVNPQLSQ 87 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +TGIT Q + + + N N Sbjct: 88 FCTELTGIT-QSVVDRASTFPDVFTAAMNYLHQNNCGEREINKRYLPVTCGDWDLKTMLP 146 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS---FKLQDLALANGIEHV 172 + G + + R S L D+ G+E Sbjct: 147 IQVKACIQQGFTVNVPPSLRRWFNIKQYMQRVLSPGLGQTVSQPIRDLPDMMSVLGLEMK 206 Query: 173 NAHDAKADVYATLALVWL 190 H + D +A V Sbjct: 207 GRHHSGIDDCRNIAAVLC 224 >gi|213584452|ref|ZP_03366278.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 216 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 57/249 (22%), Gaps = 51/249 (20%) Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 + A V V + D P+A+ I IT +E + Sbjct: 1 VEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEAMVADKPWIE-DVIP-- 53 Query: 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 + + +N F R W + M+ Sbjct: 54 ---LYYGSEWYVAHN----------ASFDRRVLPELPGEW---------ICTMKLSRRL- 90 Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 WP + ++ H A D Y T LI + + Sbjct: 91 -----WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA--ALLIDIMRTTGW--- 140 Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-WHPRYKDSVIGCNLSGD 261 + + P + + F + ++ VA P Y + + Sbjct: 141 --------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMS 190 Query: 262 MRVFQDLDS 270 + L Sbjct: 191 PELRLTLKH 199 >gi|154509219|ref|ZP_02044861.1| hypothetical protein ACTODO_01740 [Actinomyces odontolyticus ATCC 17982] gi|153798853|gb|EDN81273.1| hypothetical protein ACTODO_01740 [Actinomyces odontolyticus ATCC 17982] Length = 198 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 24/114 (21%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP------- 65 G DV D + A V D ++ P D L P A + + Sbjct: 2 TGLDVQRDALIEVAVVVTDGDLTIVD--------PGMDVLITPPAEALDNMNDFVRNMHT 53 Query: 66 -----QKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 GV E + + I +F ++ N++ D + Sbjct: 54 SSGLLDDLQTSGVSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFLEANM 107 >gi|209695293|ref|YP_002263222.1| putative exonuclease [Aliivibrio salmonicida LFI1238] gi|208009245|emb|CAQ79508.1| putative exonuclease [Aliivibrio salmonicida LFI1238] Length = 184 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 20/132 (15%) Query: 3 NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 N V +D E G + +D Q ++ ++ KP +D + Sbjct: 12 NRIVCFDLEMCCWNENGKGRTG------EIIEVGLAEIDLQTGEVVRRAQYYVKPDEDEI 65 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 V +TGITP+K + G + + + F N + D+ ++ Sbjct: 66 -SLFCVELTGITPRKIEKQGRPLEGVLKSMIKNFGGTNKIYAAW---GHDELILKSECEA 121 Query: 113 NFYDSYRWSWDN 124 + + N Sbjct: 122 KGIEFPFVEFIN 133 >gi|152998196|ref|YP_001343031.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] gi|150839120|gb|ABR73096.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 187 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 26/199 (13%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F+ D E G + + +D+Y+ P A+ +T Sbjct: 5 KEIFISVDIEASGPIPGKYSMLSIGACVTSD---PLIQFTCYLKPISDEYI--PAALEVT 59 Query: 62 GITPQKALRDGVVEAEFSRRI----HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 G++ ++ RDG+ E + ++ N FD + F+ ++ Sbjct: 60 GLSLEQLNRDGLEPIEAMTQFKTWVESLIEKDENVVLVGFNASFDWSFINYYFHYFLGEN 119 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177 I A + + + D S + ++ E HDA Sbjct: 120 PF-----------------GIAALDIKSMYFGASDSSWRSTRSSEIEKVVKPESAGDHDA 162 Query: 178 KADVYATLALVWLIREKKP 196 D L LIR+K Sbjct: 163 LHDAIYQAELFSLIRKKLM 181 >gi|120553141|ref|YP_957492.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] gi|120322990|gb|ABM17305.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 227 Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 44/201 (21%), Gaps = 31/201 (15%) Query: 4 HFVIYDYETF---------GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 +I D E G + D + RQ +++ F +P + Sbjct: 31 TLLIIDLEATCWEHRQAPNGEAQSNDNMEIIEIGCALATRQGRLLDTR-SFLVRPTRHPV 89 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 +T IT + + ++ + I + +D + Sbjct: 90 LSEFCTGLTSITQEMVDEAPA-FPGAIQAMNAWLGDLPDDFIWCSWGNYDRLHLEAQSQE 148 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEH 171 + + W LA + Sbjct: 149 HDARP-----------------AVLAFPHLNLKRIWRRTTGQKRKNGFAHALAFHDLAFE 191 Query: 172 VNAHDAKADVYATLALVWLIR 192 + H D + ++ + Sbjct: 192 GHHHRGVDDARNMVRVLPYMN 212 >gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] Length = 223 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 30/220 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 V+ D ET G D+ + A + ++ E VF + A GI+ Sbjct: 4 VLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVF---LNPEMEISQGAYDTHGISK 60 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + + ++ +F + +N FD + Sbjct: 61 EFLKNKPK-FNDVAKDFTKFIDGKK---LVIHNAEFDLAFLNKELKEVGEKQISKDN--- 113 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVYA 183 D L++ R + + + L L I++ H A D Sbjct: 114 --IVDTLNIAREKFPGAQN--------------SLDALCKRFKIDNSRRQKHSALLDCEL 157 Query: 184 TLALVWLIREKKPKLFEYLYDYR--NKNQLRKLIDIQNMT 221 + + EKK FE+ + + + ++ + D + + Sbjct: 158 LAKVYIELFEKKEPTFEFDLNAQDESIKNVKNIKDRKQII 197 >gi|148244632|ref|YP_001219326.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA] gi|146326459|dbj|BAF61602.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA] Length = 193 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 27/199 (13%) Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + + +D+ + + F +P + +P A+ Sbjct: 13 VVIDIETGGFNEKTDAMLEICTIIIGIDKMNNLYPKKPQHFHIEPFKGSILEPSAIKFNS 72 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I R V E + ++I+ I+ +N FD + R R Sbjct: 73 IDVDNPFRMAVKEVDAIKQIYTKVYTELKQKDCTRAILVGHNAFFDLGFLRAATNRCKL- 131 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + ++ LD + + + + + AH Sbjct: 132 ------KSPFHQFSTLDTVSLSALCYGETVLAKAIRKA-----------DIEWDDTCAHS 174 Query: 177 AKADVYATLALVWLIREKK 195 A D T L + + Sbjct: 175 ALYDTQKTAELFCKVFNTQ 193 >gi|313905505|ref|ZP_07838869.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] gi|313469689|gb|EFR65027.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] Length = 320 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 4 HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 +++++D E G+ R + V++D + +++ + +P + Sbjct: 2 NYIVFDLEWNQSPHGKSRENPRLPFEIIEIGAVKLDHERNIVDTWQ-KVIRPTVYKTLNY 60 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 I I ++ G + + +F + I D + + Sbjct: 61 RTREIVHIDKKEL-DAGTYFPDA---VREFLTWAGHDSIFCTWGTVDLPELQRNMK---F 113 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174 + +D+ + Y +D + L+ +E A Sbjct: 114 YNILKLLKGPMHYYDVQKLFAVQY------------EDMNSRKSLEYGIDYLKLEKQEAF 161 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231 H A D T + I ++ + Y+N + I + ++S F Sbjct: 162 HRALVDAKYTAQIFQTIDLDVMLAYDSIDVYQNPKSKTEEIHMVYNGYTKYISREFH 218 >gi|226483657|emb|CAX74129.1| three prime repair exonuclease 1 [Schistosoma japonicum] Length = 234 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 41/151 (27%), Gaps = 10/151 (6%) Query: 4 HFVIYDYETFGR-DVALD-RPAQFAGVRVDRQW--EKIEST---EVFFCKPADDYLPDPE 56 V++D ET G + + + R + Sbjct: 16 TLVLFDVETTGLPSANFNPEITELCMLACSRFGLENATDEPRVENKLTLCFNPTRTISSI 75 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF 114 A I+G+ ++ I F + ++ C + +N +RFD R Sbjct: 76 ASKISGLNSDNLFHQKDFDSSAVDLIQLFLNRLDSPVCFVAHNGLRFDFPLLRAQIMSVK 135 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145 + Y+ + D + F+ Sbjct: 136 GNDYKLNDSTNAPIICT-DTLHLFREFASHL 165 >gi|229024985|ref|ZP_04181414.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1272] gi|228736320|gb|EEL86886.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1272] Length = 208 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 48/182 (26%), Gaps = 21/182 (11%) Query: 21 RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 V++D + I +TGIT + + +F Sbjct: 18 EIVDIGAVKIDASTMKIIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIG----VEKFP 70 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + I +F I + + D + + + + SR+D+ + Y Sbjct: 71 QIIEKFIKFIGEDFIFISWGKEDYRFLSHDCTLHGVECPCME---KESRFDVQKFVFQAY 127 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 + S + L E H A AD T + ++ Sbjct: 128 ---------EELFEHTPSLQFAVEQLDLTWE-GRQHRAFADAENTANIFLKAYSERDINK 177 Query: 200 EY 201 Y Sbjct: 178 RY 179 >gi|192360456|ref|YP_001981170.1| hypothetical protein CJA_0650 [Cellvibrio japonicus Ueda107] gi|190686621|gb|ACE84299.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107] Length = 181 Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 6/80 (7%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D E G A P + V + D +A I GI + Sbjct: 9 IIDIEASGFG-AHSYPIEIGAVNARG-----DRYCALIQPQPDWTHWSEQAQRIHGIARE 62 Query: 67 KALRDGVVEAEFSRRIHQFF 86 AL G + ++QF Sbjct: 63 LALNSGKPARQVCAELNQFL 82 >gi|306829427|ref|ZP_07462617.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus mitis ATCC 6249] gi|304428513|gb|EFM31603.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus mitis ATCC 6249] Length = 197 Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 28/192 (14%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 ++ +D E F + + Q + VR + ++ + + + A +TGIT Sbjct: 7 YIAFDLE-FNQHDGVTHLIQVSAVRF-QDGQESAAFDSYVYTTAP---LKSFINGLTGIT 61 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 + VE + + F I+GYN + D Sbjct: 62 AETLKDAPKVE-QVLKDFQAFVGKSP--IVGYNAAKSDLPILLEHGLDY----------R 108 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 + DL D + GI + KLQ +A G + +H++ D T Sbjct: 109 DQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGFK-GQSHNSLEDARMT 158 Query: 185 LALVWLIREKKP 196 + E Sbjct: 159 ARVYEAFLESDE 170 >gi|268577619|ref|XP_002643792.1| Hypothetical protein CBG02003 [Caenorhabditis briggsae] gi|187037744|emb|CAP23181.1| hypothetical protein CBG_02003 [Caenorhabditis briggsae AF16] Length = 299 Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 14/198 (7%) Query: 3 NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57 ++ +I D+E D QF+ ++ + + I F + KP + Sbjct: 10 DNLLILDFEATCEKDNHDYPSEIIQFSVAVLNTREKIIREDVSFNKYVKPIINPKLTDFC 69 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI Q + E + + +N + + + Sbjct: 70 AELTGI-DQDTIDKADTFPEVYDQFTAWLEE-------HNFQEKRYAFVCESRQDVWRRA 121 Query: 118 YRWSWDNGNS-RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 + N + + + D +D SF + A + AH+ Sbjct: 122 HYQFLLNKQPLPAIFRQWVNLSFHYREDMRLAQRQDTVHQSFIEKMSAFYDIPFVGQAHN 181 Query: 177 AKADVYATLALVWLIREK 194 A ++ + I + Sbjct: 182 AMSECSFLAKVTKHILDN 199 >gi|158317263|ref|YP_001509771.1| oligoribonuclease [Frankia sp. EAN1pec] gi|158112668|gb|ABW14865.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 210 Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 34/161 (21%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + V D E G D D + A + D + ++ L P+A Sbjct: 13 MDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDL-------VLAAPDAAL-- 63 Query: 62 GITPQKA-------LRDGVVEA-------------EFSRRIHQFFSVPNTCIIGYNNIRF 101 Q G+ EA + I +F + N+I Sbjct: 64 ---DQMLPVVREMHETSGLTEAVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIAT 120 Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 D + Y D++ S L A+ Sbjct: 121 DRTFI--ARYLPQLDTFLHYRMIDVSSIKELARRWYPRAYY 159 >gi|194745839|ref|XP_001955392.1| GF18739 [Drosophila ananassae] gi|190628429|gb|EDV43953.1| GF18739 [Drosophila ananassae] Length = 187 Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 12/35 (34%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 V D E G D D+ + A V D+ Sbjct: 14 IVWMDLEMTGLDFEKDKILELACVITDKDLNVKSE 48 >gi|268577615|ref|XP_002643790.1| Hypothetical protein CBG02001 [Caenorhabditis briggsae] gi|187037742|emb|CAP23179.1| hypothetical protein CBG_02001 [Caenorhabditis briggsae AF16] Length = 299 Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 22/195 (11%), Positives = 51/195 (26%), Gaps = 14/195 (7%) Query: 3 NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEA 57 + +I D+E D QF+ ++ + + I F P Sbjct: 10 DDLLILDFEATCEKDNYDYPPEIIQFSVAVLNTREKIIREDVSFNKYVRPVINPQLTDFC 69 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 +TGI Q + E + + + +N + + + + Sbjct: 70 AELTGI-NQDTIDKADTFPEVYDQFTAWLNK-------HNIQEKRFAFVCDSRQDMWRFA 121 Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA-TSFKLQDLALANGIEHVNAHD 176 N + + + + D SF + N + + H+ Sbjct: 122 QYQFLLNKQPLPTIFRQWVNLGHLYEQDFRKAQQQDIWGPSFIEKMSGFYNIPFNGHNHN 181 Query: 177 AKADVYATLALVWLI 191 A + + + Sbjct: 182 AMDECAFLAKVTKRV 196 >gi|291520945|emb|CBK79238.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Coprococcus catus GD/7] Length = 218 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 49/173 (28%), Gaps = 18/173 (10%) Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 Q V ++ +++++ + + + + DP +TGI + + + E + Sbjct: 29 IQIGAVLLNEEFKQVGTIREYVH--PEHGVIDPFIEKLTGIKNSQVKKAPCI-GEALVHM 85 Query: 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 + D Y + + + + +D + Sbjct: 86 IDWI--------------GDREYKVYTWSESDRNQLLHEITAKQITDESVDAFMMEDRWV 131 Query: 143 PDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAKADVYATLALVWLIREK 194 + + R L + L A+ HD D T L+ + Sbjct: 132 DYQMVFSQRFQLTRRISLEEALGRADIDPKGKFHDGMDDAVNTGLLIEKLEMN 184 >gi|118586342|ref|ZP_01543794.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni ATCC BAA-1163] gi|118433233|gb|EAV39947.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni ATCC BAA-1163] Length = 177 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + V +I ++ + I G+ Sbjct: 2 NFLAMDFETASSEPWSA--VSLGLTIVRD--NQIAQ--NWYSLIKPETSFSYWNTEINGL 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L E I ++G+N N + Sbjct: 56 TADDVLDSPK-FPEVWADIKN-LYDDYPVVVGHNIRFD----------NNVLKQTLKYYG 103 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R+ LD + F G + KL + G+ + H+A D A Sbjct: 104 LKTPRYLSLDTVYLSRKF----------QPGMVNHKLDTVVSDLGLFLEHHHNASDDAQA 153 Query: 184 TLALVWL 190 + ++ Sbjct: 154 SAQILIY 160 >gi|115931228|ref|XP_001176905.1| PREDICTED: similar to three prime repair exonuclease 1, putative [Strongylocentrotus purpuratus] Length = 534 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 36/143 (25%) Query: 3 NHFVIYDYETFG-RDVALDRPAQFAGVRVDRQW--------------------------- 34 N FV D+ET + + + + V+R Sbjct: 120 NSFVFLDFETSHLLSKDHPKIIELSLIAVNRNGLLNSDVHTSLNCARKGNFTFDLSKVSL 179 Query: 35 -EKIESTEVFFCKPADDYLPDPEAVFITGITPQKA-LRDGVVEAE-FSRRIHQFFSV--P 89 I+ P P++ IT + + + E I F S Sbjct: 180 PRIIDK-LTLCVDPRKST--SPQSARITKLDKRNLDKNKKLPFDEDVICMIKLFLSRQEA 236 Query: 90 NTCIIGYNNIRFDDYYSRNIFYR 112 C++ +N +RFD R+ R Sbjct: 237 PVCLVAHNGLRFDFAILRSELSR 259 >gi|291236484|ref|XP_002738169.1| PREDICTED: CG7896-like [Saccoglossus kowalevskii] Length = 1408 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 19/189 (10%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 V+ DYE + +F V ++ + K+E FC+P + Sbjct: 1089 LVVIDYEATCEKENPTDYVHEIIEFPVVLINSKTLKMEKEFRTFCRPVLHPKLSDFCTEL 1148 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + ++ + + N + + ++ Sbjct: 1149 TGITQAQVDGAPL-FSDVLDQFENWLEE--------NKLGSEYSFAI----VTDGPWDII 1195 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKA 179 + N + + + + S KL + G+ H A Sbjct: 1196 CFLNVQCVLSQISFPEYARRW-INIRKLFSNYYHTRRLKLTLMLDHLGMTFEGRQHSGIA 1254 Query: 180 DVYATLALV 188 D ++ Sbjct: 1255 DCRNIARIM 1263 >gi|291529682|emb|CBK95268.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Eubacterium rectale M104/1] Length = 269 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 2/106 (1%) Query: 10 YETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKAL 69 ET G D D ++ + + + E + + PE IT IT + + Sbjct: 33 VETTGLDKFSDELINIHALKCHFEDKILIEDEEYNRYIRNTKALTPELEKITKITNEFLM 92 Query: 70 RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 + + + + IIG+N F + Sbjct: 93 DK-EDLSTVMEDFYNYIGE-DANIIGFNTSFLLPMLKYAGFETGWM 136 >gi|146092931|ref|XP_001466577.1| hypothetical protein [Leishmania infantum] gi|134070940|emb|CAM69616.1| conserved hypothetical protein [Leishmania infantum JPCM5] gi|322500705|emb|CBZ35782.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 405 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 19/190 (10%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAV 58 ++ D E R+ + GV +D + +++ F P Sbjct: 76 IIVVDVEATCEQNSRNYP-HEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNSRLTPFCT 134 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118 +TGIT Q+ + E + +++ T G I D + + + Sbjct: 135 QLTGIT-QEVVDAAPSITEAIQLFEKWYRE--TIPRGAKTIFAADGPWDFKNFIHEHHIL 191 Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178 R + ++ LD+ G+ L N H+ Sbjct: 192 RDHVGFPSIFYEYLDIRTTFAHHLNHGVPIKLDAM---------LRKMNLRFDGRPHNGF 242 Query: 179 ADVYATLALV 188 D Y L Sbjct: 243 DDAYNIARLA 252 >gi|319900813|ref|YP_004160541.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] gi|319415844|gb|ADV42955.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] Length = 165 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 46/201 (22%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVR---------VDRQWEKIESTEVFFCKPADDYL 52 +F D+ET A ++ R V + E ++ +P +Y Sbjct: 1 MENFAAIDFET-----ANEQ-------RCSVCSVGVVVVKDGEMTDNYYSLI-RPEPEY- 46 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 + G+T + V + R I + +N FD+ Sbjct: 47 YTYWTTRVHGLTLADTAQAPV-FPDVWREISPRIE---GLPLVAHNKAFDE--------- 93 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 + + ++ +D ++A G ++L +A G Sbjct: 94 SCLKAVFRTYGMDYPDYDFYCTLQASRRV----------IKGLPDYQLHTVASRCGYRLE 143 Query: 173 NAHDAKADVYATLALVWLIRE 193 H A AD A + ++ + Sbjct: 144 QHHHALADAEACAWIARMVFD 164 >gi|119502786|ref|ZP_01624871.1| oligoribonuclease [marine gamma proteobacterium HTCC2080] gi|119461132|gb|EAW42222.1| oligoribonuclease [marine gamma proteobacterium HTCC2080] Length = 182 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 2/41 (4%) Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 M++ + + D E G R + A + D ++ Sbjct: 1 MSDAQNLIWVDLEMTGLIPEQHRVIEMATIITDSDLNELAQ 41 >gi|115931779|ref|XP_001175832.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 268 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 53/197 (26%), Gaps = 16/197 (8%) Query: 5 FVIYDYETFGRDVALDRP---AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 F++ D+E D P +F ++V + + E+T + +P + +T Sbjct: 79 FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGV-GEFCTRLT 137 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GITP A+ + H + D + D + Sbjct: 138 GITPDMVKGQP-TFADTLKLFHVWMEKEGLV---------DPEVKF--IFVTCGDWDLKT 185 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 L + + + +Q L N H D Sbjct: 186 MFPSQCAHFELPYHSYFRRWLNIKKAFATVTSHYPKGMMQMLERLNIPHVGRHHSGIDDC 245 Query: 182 YATLALVWLIREKKPKL 198 ++ + K+ K Sbjct: 246 RNIANILQALALKRYKF 262 >gi|332669891|ref|YP_004452899.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] gi|332338929|gb|AEE45512.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] Length = 223 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 11/115 (9%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAV 58 V D E G D+ D + A V D + KP L A+ Sbjct: 18 ERIVWIDCEMTGLDLGADALVEVAAVVTDSDLRVLGGGVDVVVKPPAAALEQMNDFVRAM 77 Query: 59 FIT-GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRN 108 T G+ + L G + +++ + + + N++ D + Sbjct: 78 HTTSGLLDE--LDAGTTLEDAQQQVLDYVRTWVPEPSKAPLAGNSVGTDKAFLDR 130 >gi|119486052|ref|ZP_01620114.1| Exonuclease [Lyngbya sp. PCC 8106] gi|119456827|gb|EAW37955.1| Exonuclease [Lyngbya sp. PCC 8106] Length = 191 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 5/128 (3%) Query: 21 RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 + V V+ ++ + + F KP + +T IT + + E Sbjct: 30 EIIEIGAVMVETKKLTSVNEFQTFI-KPIRHPILTKFCQQLTSITQAQVEQAPH-YPEAI 87 Query: 80 RRIHQFFSVPNTCIIGY--NNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRA 137 + + + S + + + + ++ + + + N + ++ Sbjct: 88 KNLKNWLSQYSDSHLIWGSWGDYDRRQFDQDSQFHHVSFPIGYPHINLKKMFSTSQGLKG 147 Query: 138 IYAFSPDG 145 Y + Sbjct: 148 RYGMADAL 155 >gi|257094889|ref|YP_003168530.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047413|gb|ACV36601.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 181 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 15/37 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 NH V D E G D +R + A V D Q + Sbjct: 6 NHLVWLDMEMTGLDPERERIIELAIVITDGQLATLAE 42 >gi|209154444|gb|ACI33454.1| Histone mRNA 3-exonuclease 1 [Salmo salar] Length = 346 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 48/194 (24%), Gaps = 15/194 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+E +F V ++ +IE T + +P + V + Sbjct: 127 ICVVDFEATCEQDNPADFTHEIIEFPMVLLNTHTLEIEDTFQEYVRPEVNTQLSEFCVKL 186 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TGIT + + ++ + ++ + + Sbjct: 187 TGITQKMVDDAD-TFPDVLEQVVLWLQEKEL------GTKYKYTLLTDGSWDMSKFMNTQ 239 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 N I + + P +S L+ L L H D Sbjct: 240 CRLNSLRYPQFAKKWINIKKLYGNFYKVPRTQTKLSSM-LEKLGLKY---EGRPHSGLDD 295 Query: 181 VYATLALVWLIREK 194 + + + Sbjct: 296 SRNIAHIAMRMLQD 309 >gi|19113491|ref|NP_596699.1| RNA exonuclease [Schizosaccharomyces pombe 972h-] gi|7227906|sp|O94626|ORN_SCHPO RecName: Full=Probable oligoribonuclease gi|4456822|emb|CAB37438.1| RNA exonuclease [Schizosaccharomyces pombe] Length = 180 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 8/128 (6%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58 + V D E G +V + A + D +E K + L + + Sbjct: 4 LKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWCI 63 Query: 59 FITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 G + ++ + + E + I ++ +I N++ D + + Sbjct: 64 EQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMPK 123 Query: 113 NFYDSYRW 120 + Sbjct: 124 IIEHLHYR 131 >gi|145295978|ref|YP_001138799.1| hypothetical protein cgR_1902 [Corynebacterium glutamicum R] gi|57158136|dbj|BAD84105.1| probable oligoribonuclease [Corynebacterium glutamicum] gi|140845898|dbj|BAF54897.1| hypothetical protein [Corynebacterium glutamicum R] Length = 219 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 43/208 (20%), Gaps = 37/208 (17%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M F+ D ET G D + + D I + Sbjct: 1 MKPKPAFIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWL--------------- 45 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY----YSRNIFYRNF 114 T + ++ +V A +H+ + G+ N Sbjct: 46 -----TNELVEKESIVSAPVVEVMHEESGLWEDLKTGHTQPLRQVEAEASAWILEAGANK 100 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL--------- 165 S + D + + ++ Sbjct: 101 LPMLGSSVTFDRTWLDHHMPQLHRMFHYRSVDATSVLLASTSLYDFININDQQTLLVLDM 160 Query: 166 --ANGIEHVNAHDAKADVYATLALVWLI 191 + H A D+ + ALV Sbjct: 161 LEHLKRWDLKPHRALYDLCQSAALVKAT 188 >gi|329663381|ref|NP_001192506.1| ERI1 exoribonuclease 2 [Bos taurus] gi|297490163|ref|XP_002698031.1| PREDICTED: ERI1 exoribonuclease family member 2 [Bos taurus] gi|296473339|gb|DAA15454.1| ERI1 exoribonuclease family member 2 [Bos taurus] Length = 689 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 15/225 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 +I D+E+ G+ +F V ++ +IES + +P + + V + Sbjct: 37 LIIIDFESTCWNDGKRHRSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCVEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + I + + F Sbjct: 97 TGIKQAQV-DEGVPLKICLSQFCKWIQKIQQQKKIIFATTVSDISTSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYA--FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + R LL + + R S LQ++ + Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQF---LGRE 212 Query: 175 HDAKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218 H D T L +IR+ + + ++ + Sbjct: 213 HFGLDDSRNTALLAWKMIRDGCLMKITRSLNKVSTKRIPNIFTRN 257 >gi|94500476|ref|ZP_01307008.1| hypothetical protein RED65_16666 [Oceanobacter sp. RED65] gi|94427511|gb|EAT12489.1| hypothetical protein RED65_16666 [Oceanobacter sp. RED65] Length = 162 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 6/80 (7%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D E G P + D P EA I GI+ + Sbjct: 6 IIDLEASGFG-RGSYPIEVGVALSDGSI-----HSTLIKPPESWVHWSDEAQAIHGISRE 59 Query: 67 KALRDGVVEAEFSRRIHQFF 86 + +G E + ++ Sbjct: 60 QLNEEGKSPREVAMFLNNLL 79 >gi|218132763|ref|ZP_03461567.1| hypothetical protein BACPEC_00624 [Bacteroides pectinophilus ATCC 43243] gi|217992489|gb|EEC58492.1| hypothetical protein BACPEC_00624 [Bacteroides pectinophilus ATCC 43243] Length = 318 Score = 46.4 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 57/214 (26%), Gaps = 41/214 (19%) Query: 4 HFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55 ++++ D E G++ + V++D + + + +P Sbjct: 2 NYIVMDLEWNQCPKGKEFENKKLPFEIIEIGAVKLDSSFNVVGEFD-RLIRPQLY----- 55 Query: 56 EAVFITGITPQKA------LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109 + I + L G E + D + Sbjct: 56 --TKLHHIVKELLDVSSEELLAGGAFPEVMEEFLE-------------WCDEDYMFCIWG 100 Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG- 168 ++ +++ + + I F +DG LQ + A Sbjct: 101 SGDLTELQRNMNFFGVENKFPMPFIFYDIQKFYSILY-----EDGKIRRSLQSVIEAMHL 155 Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 E H A D T ++ ++ + K + + Sbjct: 156 SETEEFHRAINDARYTAHVMQMMDIEGVKGYYSI 189 >gi|240273598|gb|EER37118.1| oligoribonuclease [Ajellomyces capsulatus H143] Length = 189 Score = 46.4 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 21/131 (16%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55 V D E G + D+ Q D I E D + Sbjct: 10 LVWIDCEMTGLNHRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMDDWCI--- 66 Query: 56 EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNI 109 G + + + + T ++ N++ D + Sbjct: 67 ---KTHGQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRRGTGLLAGNSVHADKEFLACK 123 Query: 110 FYRNFYDSYRW 120 Y + Sbjct: 124 PYSMILKWLHY 134 >gi|322374397|ref|ZP_08048911.1| exonuclease [Streptococcus sp. C300] gi|321279897|gb|EFX56936.1| exonuclease [Streptococcus sp. C300] Length = 197 Score = 46.4 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 36/196 (18%) Query: 5 FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 ++ +D E + Q + VR + ++ + + + A +TG Sbjct: 7 YIAFDLE---FNQHEGVTHLIQVSAVRF-QDGQEYAAFDSYVYTTAPLKS---FINGLTG 59 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF--YRNFYDSYRW 120 IT + VE + + F I+GYN + D YR+ Y + Sbjct: 60 ITAETLKDAPKVE-QVLKDFQAFVGDLP--IVGYNAAKSDLPILLEHGIDYRDQYKVDLY 116 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 DL + + KLQ +A G H +H++ D Sbjct: 117 EEAFERRSSDLHGIA---------------------NLKLQTVANFLGF-HGKSHNSLED 154 Query: 181 VYATLALVWLIREKKP 196 T + E Sbjct: 155 ARMTARVYEAFLESDE 170 >gi|320586054|gb|EFW98733.1| RNA exonuclease [Grosmannia clavigera kw1407] Length = 205 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 11/33 (33%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37 V D E G D D+ + + D + Sbjct: 8 LVWIDCEMTGLDPDSDQILEIYCLVTDGHLRPV 40 >gi|300857574|ref|YP_003782557.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis FRC41] gi|300685028|gb|ADK27950.1| DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis FRC41] Length = 348 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 9/110 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V +T G + R V E+ + P P + G++ Sbjct: 22 YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAV---INPGDNPGPF--HLHGLS 76 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ G + + + + + + +N + + + R Sbjct: 77 REEIA-QGKKFSHILKPLGKLI---DGRTLILHNTPYTWGFLVSESRRTM 122 >gi|258544438|ref|ZP_05704672.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826] gi|258520327|gb|EEV89186.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826] Length = 178 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 14/38 (36%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 ++ V D E G D D + A + D Q + Sbjct: 4 PDNLVWIDLEMTGLDSQRDHILEIATLITDAQLNILAE 41 >gi|116491633|ref|YP_811177.1| DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Oenococcus oeni PSU-1] gi|116092358|gb|ABJ57512.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease [Oenococcus oeni PSU-1] Length = 177 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + V +I ++ + I G+ Sbjct: 2 NFLAMDFETASSEPWSA--VSLGLTIVRD--NQIAQ--NWYSLIKPETSFSYWNTEINGL 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L E I + ++ +N+RFD+ + Sbjct: 56 TADDVLDSPK-FPEVWADIKNLYDDYP--VVVGHNVRFDNNVLKQTLKYYGL-------- 104 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R+ LD + F G + KL + G+ + H+A D A Sbjct: 105 -KTPRYLSLDTVSLPRKF----------QPGMVNHKLDTVVSDLGLFLEHHHNASDDAQA 153 Query: 184 TLALVWL 190 + ++ Sbjct: 154 SAQILIY 160 >gi|307149737|ref|YP_003890780.1| exonuclease RNase T/DNA polymerase III [Cyanothece sp. PCC 7822] gi|306986537|gb|ADN18415.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] Length = 293 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 50/188 (26%), Gaps = 26/188 (13%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 +I D ET G + ++ + V + + S D + EA I I P Sbjct: 8 LIIDTETTG-NKDNNQVLEVGAVLYSIPNQCMLSCGSSLIAVDADTIN--EAYLINKIDP 64 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + F + + + ++ +N FD + + + +D Sbjct: 65 LATQICPQQQNYFLNWLQA--AYASADVVVAHNANFDKDVVKKLTWAQKWDKIWLCSLKD 122 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 + L L+ GI +H A D Sbjct: 123 FELFP---------------------KQYNGKRDLISLSQFYGIGISCSHRAIDDCLLLK 161 Query: 186 ALVWLIRE 193 + ++ Sbjct: 162 EVFNRVQN 169 >gi|281356111|ref|ZP_06242604.1| Exonuclease RNase T and DNA polymerase III [Victivallis vadensis ATCC BAA-548] gi|281317480|gb|EFB01501.1| Exonuclease RNase T and DNA polymerase III [Victivallis vadensis ATCC BAA-548] Length = 205 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 26/167 (15%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 + D+ET D D S E + + GIT Sbjct: 2 ILALDFETANSDP--GSVCAVGLAWFDGA-RITGSWESLIRPHRSCRWFSRLNIAVHGIT 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ + + + F+ ++ +N FD + Sbjct: 59 PEMVAQAPE-WGDVWPELAPHFA---GSMVIAHNAAFDVPVLLRTLELYGFAP------- 107 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 +D ++ WP + + KL ++ G E Sbjct: 108 --PEFDFFCTCKSARRV------WPGLE----NHKLNTVSDFLGWEF 142 >gi|73958918|ref|XP_851106.1| PREDICTED: similar to CG6393-PA, isoform A [Canis familiaris] Length = 279 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ G+ +F V ++ +IES + +P + + + + Sbjct: 37 LIVIDFESTCWNDGKHHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPVLSEFCMEL 96 Query: 61 TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 TGI + +GV ++F + I + + + F Sbjct: 97 TGIKQAQV-DEGVPLRICLSQFCKWIQKIQQQKKIIFATGISDLSNSEVKLCAFVTWSDW 155 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175 + R LL + D L GIE H Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRVTYKIFYRRKPKGLSGALQEVGIEFLGQEH 213 Query: 176 DAKADVYATLALVWLIREK 194 D T L W + Sbjct: 214 SGLDDSRNTAMLAWKMIRD 232 >gi|260220806|emb|CBA28738.1| Oligoribonuclease [Curvibacter putative symbiont of Hydra magnipapillata] Length = 193 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 12/32 (37%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW 34 + V D E G + DR + A + D Sbjct: 17 KNLVWLDCEMTGLEPETDRLLEIAVIVTDPHL 48 >gi|323143315|ref|ZP_08078006.1| ribonuclease T [Succinatimonas hippei YIT 12066] gi|322416932|gb|EFY07575.1| ribonuclease T [Succinatimonas hippei YIT 12066] Length = 251 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 10/128 (7%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62 V+ D ET G + D + A + + + + +P + +P + G Sbjct: 33 VVVDVETAGFNPETDALLEVAMMTMTMDDNGYLQPDEIMSANIRPFPNSNIEPSNIAFLG 92 Query: 63 ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115 I P + V + I + ++G+N + N+ Sbjct: 93 IDPFDESRNLQDERVAVLPMFKAISKKMKKEGCTRAILVGHNGFFDLSFIHALAKRLNYK 152 Query: 116 DSYRWSWD 123 + Sbjct: 153 RCPFHQFT 160 >gi|159904464|ref|YP_001548126.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6] gi|159885957|gb|ABX00894.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6] Length = 153 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 6/25 (24%), Positives = 10/25 (40%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFA 26 + ++ D ET G + DR Sbjct: 1 MENIIVLDTETTGLNPLTDRIITIG 25 >gi|124268531|ref|YP_001022535.1| exonuclease [Methylibium petroleiphilum PM1] gi|124261306|gb|ABM96300.1| exonuclease [Methylibium petroleiphilum PM1] Length = 233 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 36/196 (18%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRV-------DRQWE----KIESTEVFFCKPA--DDYL 52 ++ D E+ G D D A V V +R + +P+ Sbjct: 29 IVADVESGGLDPRRDPLLAIAAVGVHFAPVQGERGGRRPRIVLGDRFELLLRPSGAPSAS 88 Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112 PD + + GI A R G+ AE + + ++G+++ + R + R Sbjct: 89 PDKANILVHGIGIG-AQRAGLDPAEALQAWESYIGRSP--LVGFHSA-----FDRTLIER 140 Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172 D+ + DN + L + L D +GI + Sbjct: 141 AGRDALGRAPDNPWLDLEHLAAV---------------LHREPRQRSLDDWLAHHGITCL 185 Query: 173 NAHDAKADVYATLALV 188 H A AD AT L+ Sbjct: 186 ARHQASADALATAQLL 201 >gi|255729548|ref|XP_002549699.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240132768|gb|EER32325.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 765 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 46/179 (25%), Gaps = 12/179 (6%) Query: 1 MTNHFVIY------DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M++ ++I D T +FA +D + S + +P + Sbjct: 1 MSDIYIIVHLATTCDDSTTYVTKDSSELIEFAWETLDTSTLETLSKDSILVRPIN-TPIT 59 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 P + I+ + G + + Q+ I F R Sbjct: 60 PYCSRLHKISWEHVKNAG-SFKDAIAKFDQYVQDE----IIGKKQEFSIVMYDTSKLRVQ 114 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + + I + + + L ++ A G+E N Sbjct: 115 LSREARDKSVVLPSYLQHPRVFDIPKEYCNWQSTHAEALSYPATSLSNIITALGLEIEN 173 >gi|320168778|gb|EFW45677.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 234 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 55/219 (25%), Gaps = 19/219 (8%) Query: 5 FVIYDYE------TFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEA 57 ++ D+E T +F V +D E + S + +P + P Sbjct: 14 LLVLDFEAVCDEVT---RPKPQEIIEFPTVVLDTTTLEIVGSFH-KYVRPVSHPILTPFC 69 Query: 58 VFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +TGIT E I F+ + S + Sbjct: 70 TTLTGITQDMVSGQATFQEVFDEHLAWIQSFWKSLPPAANADADAASTASSSIPSEAPTW 129 Query: 115 YDSYRWSWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170 WD + D L + A Y + + + G + + + ++ Sbjct: 130 AFVTCGDWDLNRALPDQLAALGKKSPAPYRQWINIKKEFAVKYGVSPPGMTAMLDMLRLD 189 Query: 171 H-VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208 H D A+ + +K Sbjct: 190 LVGRHHSGIDDCRNIAAVAKEMLRDGHVFEITGTRGESK 228 >gi|290891242|ref|ZP_06554304.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429] gi|290479206|gb|EFD87868.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429] Length = 177 Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 28/187 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + V +I ++ + I G+ Sbjct: 2 NFLAMDFETASSEPWSA--VSLGLTIVRD--NQIAQ--NWYSLIKPETSFSYWNTEINGL 55 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 T L E I + ++ +N+RFD+ + Sbjct: 56 TADDVLDSPK-FPEVWADIKNLYDDYP--VVVGHNVRFDNNVLKQTLKYYGL-------- 104 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R+ LD + F G + KL + G+ + H+A D A Sbjct: 105 -KTPRYLSLDTVSLSRKF----------QPGMVNHKLDTVVSDLGLFLEHHHNASDDAQA 153 Query: 184 TLALVWL 190 + ++ Sbjct: 154 SAQILIY 160 >gi|307109864|gb|EFN58101.1| hypothetical protein CHLNCDRAFT_142424 [Chlorella variabilis] Length = 236 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 30/201 (14%) Query: 5 FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 + D E G D Q + VD + + V +P YL +TG Sbjct: 20 YYCIDVECVATGTDHNSRSVGQIS--LVDEHERVLCNFYVRPDQPVVSYL-----TPLTG 72 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 +T Q + G+ A+ + Q P+T + NI D + Sbjct: 73 LTAQLLAQHGMPLAQAVALLQQCL--PSTATLVGQNIAKDVQ-------WLGLKEGQHFE 123 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHV-NAHDAKAD 180 DL + R W ++ + F LA + HDA D Sbjct: 124 QASWGMMDLTGLFRV----------WNTQYKSWSVFGQDHLAKVLLNWDTSVGGHDAVGD 173 Query: 181 VYATLALVWLIREKKPKLFEY 201 ++ L L ++ +P ++ Sbjct: 174 ALKSIRLFKLYQQLQPHPEQW 194 >gi|114623465|ref|XP_519596.2| PREDICTED: histone mRNA 3' end-specific exonuclease isoform 2 [Pan troglodytes] Length = 298 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 12/136 (8%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ + + + + + + R Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248 Query: 114 FYDSYRWSWDNGNSRW 129 Y + W N + Sbjct: 249 KYPPFAKKWINIRKSY 264 >gi|94265398|ref|ZP_01289151.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1] gi|93454100|gb|EAT04432.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1] Length = 184 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 14/127 (11%) Query: 6 VIYDYETFGRDVALDRPA---QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +I+D ET G P + A R+ + F + PEA I G Sbjct: 4 IIFDTETNGIRP----PIFTLELAAQRMRDWLPE-GPP--FRRLLNHNQDIQPEASRING 56 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 T + RD E + + + YN D +R +++ Sbjct: 57 FTREILERDDEPPLEVYADFADY--AADLPFVAYNLDYDLDKVLIA--HRRGLHTWQQLQ 112 Query: 123 DNGNSRW 129 W Sbjct: 113 AFVMKTW 119 >gi|330983644|gb|EGH81747.1| hypothetical protein PLA107_01340 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 167 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 7/82 (8%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D+E G P + V + E +A + GI+ Sbjct: 14 IFVDFEASGIHPD-SYPIEIGIV--GPDF----EFEALIQPVRYWTHWSHDAQDMHGISR 66 Query: 66 QKALRDGVVEAEFSRRIHQFFS 87 G+ ++ ++++ FS Sbjct: 67 DLIESKGMAPSQLCQQLNDRFS 88 >gi|322688631|ref|YP_004208365.1| hypothetical protein BLIF_0443 [Bifidobacterium longum subsp. infantis 157F] gi|320459967|dbj|BAJ70587.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 493 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNVLIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|322690617|ref|YP_004220187.1| hypothetical protein BLLJ_0426 [Bifidobacterium longum subsp. longum JCM 1217] gi|320455473|dbj|BAJ66095.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 493 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|312133212|ref|YP_004000551.1| dnaq [Bifidobacterium longum subsp. longum BBMN68] gi|317482559|ref|ZP_07941574.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA] gi|311772413|gb|ADQ01901.1| DnaQ [Bifidobacterium longum subsp. longum BBMN68] gi|316915981|gb|EFV37388.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA] Length = 493 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|296453663|ref|YP_003660806.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum JDM301] gi|296183094|gb|ADG99975.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum JDM301] Length = 472 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 244 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 303 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 304 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 361 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 362 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 417 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 418 -GALDSAHNERHLGLEDSHIMLVAMKH 443 >gi|227546364|ref|ZP_03976413.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213345|gb|EEI81217.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 493 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|239622366|ref|ZP_04665397.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514363|gb|EEQ54230.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 493 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|23465751|ref|NP_696354.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705] gi|23326437|gb|AAN24990.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705] Length = 493 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|23335363|ref|ZP_00120600.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bifidobacterium longum DJO10A] gi|189439806|ref|YP_001954887.1| DNA polymerase III subunit epsilon [Bifidobacterium longum DJO10A] gi|189428241|gb|ACD98389.1| DNA polymerase III epsilon subunit [Bifidobacterium longum DJO10A] gi|291517273|emb|CBK70889.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bifidobacterium longum subsp. longum F8] Length = 493 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|195145416|ref|XP_002013689.1| GL24271 [Drosophila persimilis] gi|198452116|ref|XP_001358637.2| GA10162 [Drosophila pseudoobscura pseudoobscura] gi|194102632|gb|EDW24675.1| GL24271 [Drosophila persimilis] gi|198131794|gb|EAL27778.2| GA10162 [Drosophila pseudoobscura pseudoobscura] Length = 187 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 13/35 (37%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 V D E G DV D+ + + + D+ Sbjct: 14 LVWMDLEMTGLDVDTDKILEVSCIITDKDLNIKSE 48 >gi|213692888|ref|YP_002323474.1| hypothetical protein Blon_2029 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524349|gb|ACJ53096.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459063|dbj|BAJ69684.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 492 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52 D ET G D A D ++ E + + A Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323 Query: 53 PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104 P+ A+ +TGI + ++ G + + + +N F+ Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLIQQPYVAHNATFE-- 381 Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 + ++ Y S+ G + D L + R + + P D+ ++ + Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437 Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190 A H H D + L + Sbjct: 438 -DALDSAHNERHLGLEDSHIMLVAMKH 463 >gi|225374578|ref|ZP_03751799.1| hypothetical protein ROSEINA2194_00193 [Roseburia inulinivorans DSM 16841] gi|225213577|gb|EEG95931.1| hypothetical protein ROSEINA2194_00193 [Roseburia inulinivorans DSM 16841] Length = 574 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 7/109 (6%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 +V++D ET G + + D ++ + + I GIT Sbjct: 11 YVVFDVETNGLKSKQADLLSISFYKPD-DGKEYSKFLPL--ELNRKIV----TTHINGIT 63 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 Q + + RI + F + I+ Y FD + R+ Sbjct: 64 EQDLVGATALTQLEFDRIVEEFELEKRIILIYAGGNFDASFLSAYMKRH 112 >gi|60097923|ref|NP_776900.2| three prime repair exonuclease 1 [Bos taurus] gi|59858151|gb|AAX08910.1| three prime repair exonuclease 1 isoform b [Bos taurus] gi|296474765|gb|DAA16880.1| three prime repair exonuclease 1 [Bos taurus] Length = 315 Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 35/210 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV---RVDRQW---------------EKIESTEVFF 44 + D E G + + + + R + ++ Sbjct: 12 QTLIFLDLEATGLPFSQPKITELCLLAVHRYALEGLSAPQGPSPTAPVPPRVLDKLS--L 69 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFSV--PNTCIIGYNNIR 100 C A + P A ITG++ G +A+ I F C++ +N R Sbjct: 70 C-VAPGKVCSPAASEITGLSTAVLAAHGRRAFDADLVNLIRTFLQRQPQPWCLVAHNGDR 128 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D R S D V + + S S+ L Sbjct: 129 YDFPLLRAELALLGLASALD---------DAFCVDSITALKALEPTGSSSEHGPRKSYSL 179 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 180 GSVYTRLYGQAPPDSHTAEGDVLALLSVCQ 209 >gi|294790670|ref|ZP_06755828.1| oligoribonuclease [Scardovia inopinata F0304] gi|294458567|gb|EFG26920.1| oligoribonuclease [Scardovia inopinata F0304] Length = 242 Score = 46.4 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 18/51 (35%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 + + D E G D+ D + + V D ++ KP+ L Sbjct: 20 KSRLIWIDCEMTGLDIDHDELCEVSVVPTDFNLTVLDRGIDLVIKPSQGAL 70 >gi|170032730|ref|XP_001844233.1| ubiquitin specific protease [Culex quinquefasciatus] gi|167873063|gb|EDS36446.1| ubiquitin specific protease [Culex quinquefasciatus] Length = 862 Score = 46.4 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 70/242 (28%), Gaps = 18/242 (7%) Query: 221 TPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS 280 P + V G + ++ +P Y S + N + + + ++ + + Sbjct: 254 KPFLKVEGGY---KNFQLCYPMCCRNPSYVPSTMEFNDDARLEDIEYPNISEIRMKDDSF 310 Query: 281 HDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR 340 + + P + + + E E + ++N + N+ + Sbjct: 311 GSKPQPNRPAVDRNSKVAALHVYESKSKPITELLEEQEKLMDKSIQNEREMLSTENVLKQ 370 Query: 341 FKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 + + + ++ + + I ++ E Sbjct: 371 IHDNQENVMDDNEKFEEISTLKYQLMQMEDKQKEFIAENTRLNEQVQEYKIQEQSWRESG 430 Query: 401 FRYRARNFPHTLS----------EKEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGE 446 R AR L E++ + R + L + R+E+ + ++ ++ E Sbjct: 431 ERISAREA-ELLELEAQRRIKEKADEQKRVEQERDRLARDRLAQERLEQRREEMLRIAYE 489 Query: 447 YK 448 K Sbjct: 490 NK 491 >gi|196013998|ref|XP_002116859.1| hypothetical protein TRIADDRAFT_4552 [Trichoplax adhaerens] gi|190580577|gb|EDV20659.1| hypothetical protein TRIADDRAFT_4552 [Trichoplax adhaerens] Length = 189 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 10/89 (11%) Query: 5 FVIYDYETFGRDVALD----RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59 +++ D+E + D +F + +D E + +P + Sbjct: 7 YLVIDFEATTKSKYRDYHLPEIIEFPALLIDASTLEVFSEFHS-YVRPTINRTLSKFCKR 65 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV 88 +TGI+ + ++F+ H F + Sbjct: 66 LTGISQAMVDKA----SDFATVHHLFLNW 90 >gi|209546810|ref|YP_002278728.1| hypothetical protein Rleg2_4741 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538054|gb|ACI57988.1| hypothetical protein Rleg2_4741 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 182 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 8/87 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63 V D+E P + A V D + +PA + +A I GI Sbjct: 2 IVFLDFEASSLGK-HSYPVEIAWVFED------GRSRSLLIRPAANWTDWSSDAERIHGI 54 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPN 90 + + R GV A + + S + Sbjct: 55 SRELLARQGVSVAFVVKEMMMALSGHD 81 >gi|121610584|ref|YP_998391.1| putative DNA exonuclease X [Verminephrobacter eiseniae EF01-2] gi|121555224|gb|ABM59373.1| Exodeoxyribonuclease X [Verminephrobacter eiseniae EF01-2] Length = 224 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 57/220 (25%), Gaps = 33/220 (15%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE--KIESTEVFFCKPADDYLPDPEAVFITGI 63 +I+ +T G Q A + V + +E E + + A+ I Sbjct: 4 LIFGTKTTGLH--EPAIVQAAWLMVKDPFTLTVVERFEQRY---NPGKPIELGALATHHI 58 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 ++ F P T + +++ +D Sbjct: 59 LDEELADCPPA--------SGFSLPPGTEYLIGHDVDYDWRVIGA--------------- 95 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 R L + R + A Q L A+ H H A + Sbjct: 96 PPVKRICTLALARWLLADIDSHTQAAMLYLFERGSASSLLQHAHSARHDVMHCA---IVL 152 Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223 L + + ++ L+ + ++ K + L Sbjct: 153 EHLLARMGDITEATTWQTLWQRSEQARIPKTLTFGKHKGL 192 >gi|261327259|emb|CBH10235.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 452 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 23/197 (11%) Query: 5 FVIYDYETFGRDVALD----RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAV 58 ++ D E + D + GV VD + ++ F + +P + L P Sbjct: 144 LIVVDVEAT-CEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVRPQRNPLLTPFCK 202 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT + + + + F T G D + + + Sbjct: 203 ALTGITQEDVDSAPT-----LQEVVKLFEQWYTETIPRGAKVALATDGPWDLKNFVHEHS 257 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R ++ LD+ F G + L H Sbjct: 258 ILRDHISFPTIFYEYLDIRTTFAHFFNRG---------TPLKLVPMLERLQLTFEGREHC 308 Query: 177 AKADVYATLALVWLIRE 193 D L + Sbjct: 309 GFDDAVNIARLAVSMMR 325 >gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 212 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 45/194 (23%), Gaps = 26/194 (13%) Query: 15 RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74 R A+ V + + F A + G+ + Sbjct: 1 LSPRYHRLAEVGCVEI-ACGRITGNY--FHAYINPRQRMTRGAQAVHGLRDEFLATQPA- 56 Query: 75 EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134 + ++R+ F + +N+ FD + + + Sbjct: 57 FSAIAQRLLFFLCQS---TLVGHNLSFDLNFLDAGLATAGF----------------MPA 97 Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYATLALVWLIR 192 R + ++ F L G+ + H A D + + Sbjct: 98 ARYCHGVIDTMCHL-AQRGSRRRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAFVVAK 156 Query: 193 EKKPKLFEYLYDYR 206 +PK+ Sbjct: 157 RTRPKIGYNCATMS 170 >gi|149377361|ref|ZP_01895106.1| hypothetical protein MDG893_17757 [Marinobacter algicola DG893] gi|149358373|gb|EDM46850.1| hypothetical protein MDG893_17757 [Marinobacter algicola DG893] Length = 178 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITGITP 65 D+E D+ P + D + + +P A + GIT Sbjct: 9 FIDFEASSLDLIASYPIEVGICLPD------GTLHSWLIQPHVLWQDWSESAEQVHGITR 62 Query: 66 QKALRDGVVEAEFSRRIHQFFS 87 + +G +E + ++Q S Sbjct: 63 ETLKTEGTPVSEVAAHLNQLLS 84 >gi|261338128|ref|ZP_05966012.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093] gi|270276756|gb|EFA22610.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093] Length = 219 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 + D E G D+ D + + V D + ++ F KP+ D + Sbjct: 17 LIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDEGIDFVIKPSKDAV 64 >gi|47218345|emb|CAG04177.1| unnamed protein product [Tetraodon nigroviridis] Length = 340 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 45/171 (26%), Gaps = 15/171 (8%) Query: 5 FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 + D+E +F V ++ E ++S + KP + V Sbjct: 121 ICVVDFEATCEVDNPSDYHHEIIEFPMVLINTHTLEIVDSFRE-YVKPELNPQLSDFCVK 179 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYR 112 +TGIT + + R + + + + R Sbjct: 180 LTGITQKMVDKA-EPFPAVLERAVAWLQERELGTKYKYAILTDGSWDMSKFLNIQCQISR 238 Query: 113 NFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 Y + W N + + V R S + +G L D Sbjct: 239 IRYPQFAKKWINIRKAYRNFYKVSRTQTKLSTMLEKLGLTYNGRPHCGLDD 289 >gi|47606205|sp|Q9BG99|TREX1_BOVIN RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5' exonuclease TREX1 gi|12751327|gb|AAK07622.1|AF319575_1 3'-5' exonuclease TREX1 [Bos taurus] Length = 315 Score = 46.0 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 35/210 (16%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV---RVDRQW---------------EKIESTEVFF 44 + D E G + + + + R + ++ Sbjct: 12 QTLIFLDLEATGLPFSQPKITELCLLAVHRYALEGLSAPQGPSPTAPVPPRVLDKLS--L 69 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFSV--PNTCIIGYNNIR 100 C A + P A ITG++ G +A+ I F C++ +N R Sbjct: 70 C-VAPGKVCSPAASEITGLSTAVLAAHGRRAFDADLVNLIRTFLQRQPQPWCLVAHNGDR 128 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D R S D V + + S S+ L Sbjct: 129 YDFPLLRAELALLGLASALD---------DAFCVDSIAALKALEPTGSSSEHGPRKSYSL 179 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 180 GSVYTRLYGQAPPDSHTAEGDVLALLSVCQ 209 >gi|260774665|ref|ZP_05883570.1| oligoribonuclease [Vibrio coralliilyticus ATCC BAA-450] gi|260609384|gb|EEX35533.1| oligoribonuclease [Vibrio coralliilyticus ATCC BAA-450] Length = 167 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 7/115 (6%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI---TPQKA 68 G D + + A + D + + + +P ++ E T + Sbjct: 2 TGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQPEEELAKMDEWCTTTHTGSGLVDRV 61 Query: 69 LRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 V E + R+ +F I N++ D + + Sbjct: 62 RASKVTEQDAVRQTIEFLEQWLPKGVSPICGNSVGQDRRFLYKHMPELETYFHYR 116 >gi|109896857|ref|YP_660112.1| exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas atlantica T6c] gi|109699138|gb|ABG39058.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas atlantica T6c] Length = 224 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 55/220 (25%), Gaps = 30/220 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59 F+ D E D+ + V + + ++I ++ + A Sbjct: 29 FLCIDLELTSLDLNDTKILSIGWV--EGKGKQISLQSCYY------QVISTTASLNQSPV 80 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I G+T G + QF S + ++ D +F + Sbjct: 81 IHGLTADHIA-QGQPLRIALEALKQFASSH---VWVFHCTHLDMTVLNGVFKKLNIP--- 133 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + + + + L + V AH+A Sbjct: 134 ---------LPTVVTLDTLRFGLYQLTKNLRPPPPNAVV-LPVCRARYNLPAVPAHNALD 183 Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219 D ATL L++ +K ++ Sbjct: 184 DAMATLELLFAQIQKFAPKNTDTLKTLMVTDALEVFPAPT 223 >gi|10957521|ref|NP_051628.1| hypothetical protein DR_B0095 [Deinococcus radiodurans R1] gi|6460950|gb|AAF12654.1|AE001826_123 hypothetical protein DR_B0095 [Deinococcus radiodurans R1] Length = 228 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 9/80 (11%) Query: 7 IYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFI 60 + D E G A + V + E +E T + Sbjct: 6 VVDVEATCWEGEPPAGQHSEIIEIGIVVL--NLETLERTGKRSVMVRPEHSEVSAFCTRL 63 Query: 61 TGITPQKALRDGVVEAEFSR 80 TGITP++A GV R Sbjct: 64 TGITPEEAA-SGVSFGAVLR 82 >gi|62859267|ref|NP_001016146.1| exoribonuclease 1 [Xenopus (Silurana) tropicalis] gi|89268181|emb|CAJ81479.1| exonuclease 1 [Xenopus (Silurana) tropicalis] Length = 345 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 13/163 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+E G +F V ++ +IE + +P + V + Sbjct: 126 ICVIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNL 185 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT Q + + + R + + + + + R Sbjct: 186 TGIT-QDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILTDGSWDMSKFLNMQCRVSRL 244 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGA 155 Y + W N + + V R + + DG Sbjct: 245 KYPRFAKKWINICKSYGNFYKVPRTQTKLTTMLEKLGMTYDGR 287 >gi|199597071|ref|ZP_03210504.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] gi|258507513|ref|YP_003170264.1| DNA polymerase III alpha subunit (Gram-positive type) [Lactobacillus rhamnosus GG] gi|199592204|gb|EDZ00278.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] gi|257147440|emb|CAR86413.1| DNA polymerase III, alpha subunit (Gram-positive type) [Lactobacillus rhamnosus GG] gi|259648866|dbj|BAI41028.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 469 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 7/85 (8%) Query: 5 FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V+ D E ++ + + +RV + +I+ T F + + P +V ITG Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRVRQH--RIDQTFDIFTQLPAGHHVMPFSVKITG 329 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS 87 IT + G + Q Sbjct: 330 ITDDLLAKYGQSLPLVKTALQQLLR 354 >gi|27378800|ref|NP_770329.1| hypothetical protein bsl3689 [Bradyrhizobium japonicum USDA 110] gi|27351949|dbj|BAC48954.1| bsl3689 [Bradyrhizobium japonicum USDA 110] Length = 68 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVD 31 MT ++ D ET G D D + V+ D Sbjct: 1 MTKTGILIDVETTGLDQHEDEVIELGMVKFD 31 >gi|157870091|ref|XP_001683596.1| phosphotransferase [Leishmania major strain Friedlin] gi|68126662|emb|CAJ04503.1| putative phosphotransferase [Leishmania major strain Friedlin] Length = 582 Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 6/92 (6%) Query: 3 NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58 + +V+ D+E R ++ +F V +D R + + + +P + + Sbjct: 56 DAYVVLDFEATCEADRRISDAEVIEFPMVLIDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90 +TGIT R QF + Sbjct: 115 ELTGITQDMVSRCD-PFPVVYCEALQFLAEAG 145 >gi|299753899|ref|XP_001833615.2| double-strand siRNA ribonuclease [Coprinopsis cinerea okayama7#130] gi|298410514|gb|EAU88160.2| double-strand siRNA ribonuclease [Coprinopsis cinerea okayama7#130] Length = 389 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 51/212 (24%), Gaps = 30/212 (14%) Query: 5 FVIYDYETF---GRDVAL-DRPAQF-AGVRVDRQ---------WEKIESTEVFFCKPADD 50 F++ D E G D+ + +F + E I+ F +P Sbjct: 143 FLVLDIEGTCDQGSDLDFPNEIIEFPVCLLTWNDKGQDMSASELEVIDEFRSF-VRPTWR 201 Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDD 103 + +TGIT ++ E + F + Sbjct: 202 PVLTDFCKDLTGITQEQVDSAP-TFPEVLAQFEAFIKKNGLINDEGEPLVRFCWCTDGPF 260 Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR--AIYAFSPDGIQWPSRDDGATSFKLQ 161 I + F W + D+ +++ + + S + Sbjct: 261 DIQNFIIKQCFISKLPLPWWLKGNVLDVRTLVQHYVAKQTRSNHGHRGRSNVTVPSRRSL 320 Query: 162 DL-----ALANGIEHVNAHDAKADVYATLALV 188 ++ L H D ++ Sbjct: 321 NIPAQLKVLELQEFQGRQHSGIDDTRNIARIL 352 >gi|242087831|ref|XP_002439748.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor] gi|241945033|gb|EES18178.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor] Length = 283 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 21/194 (10%) Query: 1 MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56 M + FV+ D+E G + +F V VD + + + +P Sbjct: 1 MFDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRT-YVRPRHHPRLTDF 59 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT GV AE ++ + + + D Sbjct: 60 CRDLTGITQGDV-DAGVTLAEALGMHDRWLEAHGAKL-------------GKLAVVTWGD 105 Query: 117 SYRWSWDNGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174 + G R+ ++ + + G F LQD G+ Sbjct: 106 WDCRTMLEGECRFKGIEKPHYFDDWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGRL 165 Query: 175 HDAKADVYATLALV 188 H D T L+ Sbjct: 166 HCGLDDALNTAHLL 179 >gi|120553048|ref|YP_957399.1| hypothetical protein Maqu_0105 [Marinobacter aquaeolei VT8] gi|120322897|gb|ABM17212.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 170 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%) Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEA 57 M++ F D+E D+ P + D + +P A Sbjct: 1 MSSDFSPAFIDFEASSLDLIASYPIEVGICMPDGAL------HSWLIQPHVLWQDWSESA 54 Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFF 86 I GI+ Q+ L++G+ +E ++++++ Sbjct: 55 ETIHGISRQRLLQEGMPVSEVAQQLNELL 83 >gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E] gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E] Length = 195 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 33/190 (17%) Query: 4 HFVIYDYET--FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D+ET +G V D + + D E + + Sbjct: 2 KYTAIDFETAFWG----KGNACSLGIVISDGS-KLTDEWYDLIRPV--HLNFDEECIRVN 54 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 GI P+ + +I N + +N FD N R + Sbjct: 55 GIHPEDVKDKPEFPY-YWDKISGLL---NGTVAFAHNAPFDFGVLANTIDRYELPDINFC 110 Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181 W D +++ R ++ + KL +A E N H A D Sbjct: 111 W------GDTVEISRILW-------------KKLPNHKLNTVAEFLNFEF-NHHQALDDA 150 Query: 182 YATLALVWLI 191 A +V Sbjct: 151 RACEWIVRHA 160 >gi|254520242|ref|ZP_05132298.1| exonuclease [Clostridium sp. 7_2_43FAA] gi|226913991|gb|EEH99192.1| exonuclease [Clostridium sp. 7_2_43FAA] Length = 300 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 24/195 (12%) Query: 20 DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 + + +++D + +E + + KP+ + +P+ IT I + GV Sbjct: 39 NEIIEIGAIKLDNYMKPLEEFKT-YIKPSVIPVLNPKISEITNIKEEDL-EKGVSFEVGI 96 Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 + + + D + ++D LD ++ Sbjct: 97 ESLSKIIDDGDII-----------------CSWAKDDIIEIINNAVYHKYDNLDWLKNYL 139 Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPK 197 + S L++ I N HDA D T + I + Sbjct: 140 DLQEYSTKI---LGKKKSLSLKNALEELKIRIDNNKLHDALNDAIYTSLVFKRIYNSRAL 196 Query: 198 LFEYLYDYRNKNQLR 212 + D N + Sbjct: 197 KSYIIKDIYNMPAVE 211 >gi|296087843|emb|CBI35099.3| unnamed protein product [Vitis vinifera] Length = 520 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 71/253 (28%), Gaps = 34/253 (13%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 FV+ D+E G++ +F V V ++E+ + +P + + +T Sbjct: 246 FVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSDFCKDLT 305 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFY- 115 GI + GV +E R ++ ++ ++N ++ Sbjct: 306 GIQQIQV-DRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIRK 364 Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNA 174 Y W N + G L++ G A Sbjct: 365 PPYFNRWINLKVPF--------------------REVFGGVWCNLKEAVEMAGLAWQGRA 404 Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234 H D T L+ + F++ Q + +P + + + Sbjct: 405 HCGLDDAKNT---ARLLAFLMHRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQK 461 Query: 235 SNTALIAPVAWHP 247 I +HP Sbjct: 462 LREPTIPLFHYHP 474 >gi|229826629|ref|ZP_04452698.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC 49176] gi|229789499|gb|EEP25613.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC 49176] Length = 313 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 76/258 (29%), Gaps = 38/258 (14%) Query: 5 FVIYDYETFGRDVALDR--------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56 ++++D E + + + V++D ++ I+S KP + PE Sbjct: 3 YIVFDLEWNQGYPSKEESEKSLPFEIIEIGAVKLDEHFKIIDSFH-RIIKP----VVYPE 57 Query: 57 AVFITG----ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-DYYSRNIFY 111 T +T + G + ++ + D RN+ + Sbjct: 58 LFKYTKELIPLTEKDL-SKGTDFVTACKEFLKWCRKGDRNYSFATWGTLDLLELQRNMAF 116 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 Y+ + Y T F L++ ++ Sbjct: 117 FEVYNCFSRP---------------LYYYNVQYLFNIFMEKYDETVFSLENAIKYLELDE 161 Query: 172 VNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYR---NKNQLRKLIDIQNMTPLVHVS 227 A H A +D T ++ I + +L+ + Y+ NKNQ +I + + Sbjct: 162 DKAFHSAISDAEYTAEILRHISDINIRLYPSVDTYKFPLNKNQEVSIIYPDHKLSITRAY 221 Query: 228 GMFGASRSNTALIAPVAW 245 A R + A Sbjct: 222 SSKEALRKASESEAFCCH 239 >gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336] gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336] Length = 218 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 26/198 (13%) Query: 6 VIYDYETFGRDVALD--RPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62 VI D ET G + D +++D + + F +P + +PE++ G Sbjct: 24 VIIDVETAGFNAQTDALLELAALTLKMDENGLLVPDEKCHFHIQPFEGANINPESLKFNG 83 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116 I LR + E + + + +I +N FD + R Sbjct: 84 IDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAAAERTKIK 143 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 N + + D + SF + AH Sbjct: 144 ------RNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISF-----------DGKKAHS 186 Query: 177 AKADVYATLALVWLIREK 194 A D T L + Sbjct: 187 ALYDAERTAELFCYMVNH 204 >gi|83645626|ref|YP_434061.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83633669|gb|ABC29636.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 176 Score = 46.0 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 45/186 (24%), Gaps = 23/186 (12%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D ET D + A +R K+ A + I+ Sbjct: 4 LFLDTETTNLD-DTAEVVEIA--VTNRHGTKL-----LNTLVKPQGPMSAAAQNVHQISE 55 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + R+++ +I +N + Sbjct: 56 LELKGAP-SWPITYPRVYKLLYKRP--VIIFNADFDVRILRQTCNAWALPPIPFTP---- 108 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185 L MR F + + + L+ + + + H A D T Sbjct: 109 ------LCAMRLYAEFHGQWSEKGQFKYQSQARALEQI--GHPAAATSLHRAAYDAQMTS 160 Query: 186 ALVWLI 191 +++ + Sbjct: 161 EIIYTM 166 >gi|57530089|ref|NP_001006450.1| 3'-5' exoribonuclease 1 [Gallus gallus] gi|53130526|emb|CAG31592.1| hypothetical protein RCJMB04_8i1 [Gallus gallus] Length = 327 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 + D+E G +F V ++ +IE T + KP + V + Sbjct: 108 ICVVDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVKPEINPKLSEFCVGL 167 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + + + + + + + + R Sbjct: 168 TGITQDIVDKAD-TFPQVLQNVVDWMRQRELGTKYSYCMLTDGSWDMSKFLNIQCRVSRI 226 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + S+ W N + + V R + DG L D Sbjct: 227 KHPSFAKKWINIRKSYGNFYKVPRNQTKLMIMLEKLGMSYDGRPHSGLDD 276 >gi|118591295|ref|ZP_01548693.1| hypothetical protein SIAM614_26648 [Stappia aggregata IAM 12614] gi|118435967|gb|EAV42610.1| hypothetical protein SIAM614_26648 [Stappia aggregata IAM 12614] Length = 218 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 20/102 (19%) Query: 2 TNHFVIYDYE--TF---------G-RDVALDRPAQFAGVRVDRQW--EKIESTEVFFCKP 47 +H +IYD E T G D + AQ V++ Q + +++ V KP Sbjct: 1 MHHVIIYDCEYLTAPGAMRRQWCGPLDPDPN-VAQIGAVKLSLQGGYDILDTFNVLI-KP 58 Query: 48 AD----DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85 D DP +TGIT R+G+ + R F Sbjct: 59 RDRFGAHPNVDPFFTELTGITQADIDREGIAHVDALERFADF 100 >gi|145297909|ref|YP_001140750.1| oligoribonuclease [Aeromonas salmonicida subsp. salmonicida A449] gi|166215749|sp|A4SJD0|ORN_AERS4 RecName: Full=Oligoribonuclease gi|142850681|gb|ABO89002.1| oligoribonuclease [Aeromonas salmonicida subsp. salmonicida A449] Length = 181 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + V D E G D + + A + D+ + Sbjct: 6 QNLVWIDMEMTGLDPEENVVLEIATIVTDKDLNVLAE 42 >gi|54696964|gb|AAV38854.1| three prime repair exonuclease 1 [synthetic construct] Length = 305 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 1 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 59 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGYR 118 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199 >gi|45476845|sp|Q7TMF2|ERI1_MOUSE RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5' exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName: Full=Histone mRNA 3'-exonuclease 1 gi|28204890|gb|AAH46412.1| Exoribonuclease 1 [Mus musculus] gi|74179153|dbj|BAE42771.1| unnamed protein product [Mus musculus] gi|148703505|gb|EDL35452.1| three prime histone mRNA exonuclease 1 [Mus musculus] Length = 345 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCIGL 185 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ ++ + + + R Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRL 244 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + ++ W N + + V R+ + + DG L D Sbjct: 245 KHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294 >gi|71417701|ref|XP_810631.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70875192|gb|EAN88780.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 379 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 36/211 (17%) Query: 9 DYETF--GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E VA +F V VD + + + +P + +TGIT Sbjct: 99 DFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHS-YVRPTKNPRLTSFCTALTGIT 157 Query: 65 PQKALRDGVVEAEFSRRIH----------------QFFSVPNTCI-----------IGYN 97 + E R + N C+ +N Sbjct: 158 QAQVDAAPR-LPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETHN 216 Query: 98 NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D + +D + S + ++ + + Sbjct: 217 PGWIDCERMICMVTDGPWDM--RKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRP 274 Query: 158 FKLQDLALANGIE-HVNAHDAKADVYATLAL 187 KL D+ G+ H + H D + Sbjct: 275 RKLNDMLRKLGLSFHGHPHSGIDDSRNIARI 305 >gi|27904991|ref|NP_778117.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396112|sp|Q89A34|ORN_BUCBP RecName: Full=Oligoribonuclease gi|27904389|gb|AAO27222.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 160 Score = 46.0 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 5/35 (14%), Positives = 15/35 (42%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37 + + D E G + + + + A + D+ + + Sbjct: 6 KNLIWIDLEMTGLNPNIHKIIEIATLITDKNLKIL 40 >gi|322821651|gb|EFZ27916.1| exonuclease, putative [Trypanosoma cruzi] Length = 379 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 36/211 (17%) Query: 9 DYETF--GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E VA +F V VD + + + +P + +TGIT Sbjct: 99 DFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHS-YVRPTKNSRLTSFCTALTGIT 157 Query: 65 PQKALRDGVVEAEFSRRIH----------------QFFSVPNTCI-----------IGYN 97 + E R + N C+ +N Sbjct: 158 QAQVDAAPR-LPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETHN 216 Query: 98 NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D + +D + S + ++ + + Sbjct: 217 PGWIDCERMICMVTDGPWDM--RKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRP 274 Query: 158 FKLQDLALANGIE-HVNAHDAKADVYATLAL 187 KL D+ G+ H + H D + Sbjct: 275 RKLNDMLRKLGLSFHGHPHSGIDDSRNIARI 305 >gi|322500703|emb|CBZ35780.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 880 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 18/148 (12%) Query: 5 FVIYDYETFGRDVALD-------RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPE 56 ++ D+E +F V VD + + + F +P P Sbjct: 632 LLVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH-RFVRPRYKRELSPF 687 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFY 111 +TG+ + E R+ ++ S + + ++ + Sbjct: 688 CQKLTGMRQEDVDTA-ASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVS 746 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 R + + + R Sbjct: 747 RQGIRFPSLFYQFIDVKQTFACFFRCSQ 774 >gi|146092929|ref|XP_001466576.1| hypothetical protein [Leishmania infantum] gi|134070939|emb|CAM69615.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 880 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 18/148 (12%) Query: 5 FVIYDYETFGRDVALD-------RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPE 56 ++ D+E +F V VD + + + F +P P Sbjct: 632 LLVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH-RFVRPRYKRELSPF 687 Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFY 111 +TG+ + E R+ ++ S + + ++ + Sbjct: 688 CQKLTGMRQEDVDTA-ASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVS 746 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 R + + + R Sbjct: 747 RQGIRFPSLFYQFIDVKQTFACFFRCSQ 774 >gi|221132558|ref|XP_002167097.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 287 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 52/197 (26%), Gaps = 24/197 (12%) Query: 5 FVIYDYETFGRDVA----LDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59 +V+ D+E + +F V V E + +C+P + + Sbjct: 97 YVVIDFEATCDEPNPSGFQHEIIEFPAVLVKTSTLEIVSEFHS-YCRPVINPVLSEFCKS 155 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + V E +R ++ + D Sbjct: 156 LTGITQVQVESSSVFEV-VLQRFDKWLKQ---------------QVMPTETFCIATDGPW 199 Query: 120 WSWDNGNSRWDLLDVMRAIYAFS-PDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDA 177 ++ L++ Y + + ++ + G+E H Sbjct: 200 DLDRFLKNQCKTLNIQIPHYFHRWVNIRKHFYNYYKINQANVELMLQHLGMEFEGRPHRG 259 Query: 178 KADVYATLALVWLIREK 194 D ++ + Sbjct: 260 IDDARNIARILIQLIRD 276 >gi|297156433|gb|ADI06145.1| Exonuclease RNase T and DNA polymerase III [Streptomyces bingchenggensis BCW-1] Length = 188 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 12/140 (8%) Query: 3 NHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTE--VFFCKPADDYLPDP 55 + ++ D E G + + E +P + P Sbjct: 7 DRILVVDVEATCWDGPAPEGMESEIIEIG--LCELDVATGERPVRRSLMVRPEHSTV-SP 63 Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 +T ITP++A G+ AE + + ++R N Sbjct: 64 FCTELTTITPEQAA-AGIGFAEACEILRDE-HGAGHRVWASWGEYDRAQFTRQSSATNIR 121 Query: 116 DSYRWSWDNGNSRWDLLDVM 135 + N + + L+ + Sbjct: 122 YPFGTRHLNVKNLYSLMHSL 141 >gi|229821136|ref|YP_002882662.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae DSM 12333] gi|229567049|gb|ACQ80900.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae DSM 12333] Length = 235 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 + V D E G D+A D + A + D + ++ P L Sbjct: 7 KDPIVWIDCEMTGLDLATDALVEVAVIVTDSELHPLDGGIDVVIAPPPGAL 57 >gi|55959490|emb|CAI12490.1| prion protein interacting protein [Homo sapiens] gi|56203065|emb|CAI23193.1| prion protein interacting protein [Homo sapiens] Length = 204 Score = 45.6 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 19/192 (9%), Positives = 49/192 (25%), Gaps = 19/192 (9%) Query: 21 RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 +F ++++ + +IEST + +P P +TGI + Sbjct: 3 EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 61 Query: 81 RIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133 R+ ++ + + + + Y + + + Sbjct: 62 RVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKGSSPG 121 Query: 134 VMRAIYAFSPDGIQWPSRDDG----------ATSFKLQDLALANGIEH-VNAHDAKADVY 182 + + Q G L D+ ++H H D Sbjct: 122 TASGTSCYQSEEAQRKENTPGVKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCK 181 Query: 183 ATLALVWLIREK 194 ++ + + Sbjct: 182 NIANIMKTLAYR 193 >gi|229553558|ref|ZP_04442283.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus LMS2-1] gi|258538698|ref|YP_003173197.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705] gi|229313183|gb|EEN79156.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus LMS2-1] gi|257150374|emb|CAR89346.1| DNA polymerase III, alpha subunit (Gram-positive type) [Lactobacillus rhamnosus Lc 705] Length = 471 Score = 45.6 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 7/84 (8%) Query: 5 FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62 +V+ D E ++ + + +R+ + +I+ T F + + P +V ITG Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRIRQH--QIDQTFDIFTQLPAGHHVMPFSVKITG 329 Query: 63 ITPQKALRDGVVEAEFSRRIHQFF 86 IT + G + Q Sbjct: 330 ITDDLLEKYGQPLPLVKTALQQLL 353 >gi|164686250|ref|ZP_02210280.1| hypothetical protein CLOBAR_02688 [Clostridium bartlettii DSM 16795] gi|164601852|gb|EDQ95317.1| hypothetical protein CLOBAR_02688 [Clostridium bartlettii DSM 16795] Length = 344 Score = 45.6 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 11/215 (5%) Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 ++ D + +KIE + KP P +T IT + E+ R Sbjct: 27 IAIGAIKYDTKTKKIEKFKSLI-KPILTKTVYPHIEELTHITTEDLENAPTYES-VMRSF 84 Query: 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142 + N Y D +N + + + N + + + + Sbjct: 85 KHWLGDFNEIDGIYTFGNLDLTCFKNTDRISSQKNNHPRFLNNIQNFFVDIKEKYLEYGV 144 Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202 S N +AHD D Y L ++ + + + Sbjct: 145 KCMNYISLTHLLELS---------NMKFSGDAHDPLYDAYNLHILDEILEKNQDVRNYLI 195 Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237 NK+ ++ D + ++ + Sbjct: 196 IQDINKSPYNQIDDEIEAKIKDYEKYLYHKEGNYN 230 >gi|220921028|ref|YP_002496329.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219945634|gb|ACL56026.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 222 Score = 45.6 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 6/112 (5%) Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPEAV 58 + + D E G A DR F V +D + + P A Sbjct: 16 LPPRLLAIDVEATGL-AARDRIVSFGAVALDTASLLGPSPAPTCHHLIFDPQRVSHPRAE 74 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110 + G A I + +I +N FD + F Sbjct: 75 AVHGYDDWLLRHQD-PAALHLNAIAALLGQAD--LIVAHNAAFDFGLLQREF 123 >gi|125547686|gb|EAY93508.1| hypothetical protein OsI_15303 [Oryza sativa Indica Group] Length = 214 Score = 45.6 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 12/30 (40%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDR 32 V D E G D+ DR + A + D Sbjct: 69 KPLVWIDLEMTGLDITKDRILEIACIITDG 98 >gi|332994343|gb|AEF04398.1| hypothetical protein ambt_14420 [Alteromonas sp. SN2] Length = 176 Score = 45.6 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 6/82 (7%) Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66 I D E G A P + VR D D EA + GIT Sbjct: 13 IIDLEASGFG-ARSYPIEIGIVRYDG-----AKWCKLIRPFDSWVHWDQEAESLHGITRA 66 Query: 67 KALRDGVVEAEFSRRIHQFFSV 88 GV + ++ F S Sbjct: 67 MLNTYGVCPVKVCHELNAFLSN 88 >gi|239993165|ref|ZP_04713689.1| putative DNA polymerase, exonuclease activity [Alteromonas macleodii ATCC 27126] Length = 229 Score = 45.6 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 54/205 (26%), Gaps = 36/205 (17%) Query: 8 YDYETFGRDVALDRPAQFAGV--------RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 D E D + V + I ++ P Sbjct: 36 VDLELTSLDPVTTQITSIGYVSGSAGKITLSSSGYHVINTSADLGQSPV----------- 84 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 I G+T + + I+ + T ++ ++N R D + F R Sbjct: 85 IHGLTLDILQQG----EGLADAINSLLPLLKTHVLIFHNARLDLMALDSAFKRCGLPQME 140 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 + D L + +Y + PS S L + H+A Sbjct: 141 VLY------LDTLQLA--LYQLNKQHQVLPSN-----SATLTVCRQRLDLPAFPEHNALD 187 Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204 D AT+ L + + E + Sbjct: 188 DALATMQLFYAQLNELGITLENSLE 212 >gi|312068745|ref|XP_003137358.1| smfn protein [Loa loa] gi|307767487|gb|EFO26721.1| smfn protein [Loa loa] Length = 186 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 14/149 (9%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL----PDPEAVFI 60 + D E G DV + A V + +E D L +A F Sbjct: 10 IIWMDCEMTGLDVTSKTIVEIACVITEPDLTIVEEGLNLIISQPKDVLEGMDDWCKATFT 69 Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRN-----IFY 111 G+ Q+ + + I + P C +G N++ D + + + Sbjct: 70 SNGLL-QEIRSSKITVQQAENEILTYVRQHTDPGMCPLGGNSVGSDRIFLQKYMPTLEKH 128 Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140 ++ + S RW R Sbjct: 129 LHYRNIDVSSIKELAKRWYPYIYARKPRK 157 >gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 199 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 28/166 (16%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65 + D+ET + + E +P + + I GI P Sbjct: 7 IAIDFET--ANEQRGSACSVGLAWI-EDGRVT-RVEERLIRPREMR-FSGMNIAIHGIRP 61 Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125 + E H+ S + +N FD +R D YR S+ Sbjct: 62 EHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQSY--- 109 Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171 + + + WP S +L +A G+ Sbjct: 110 -------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 144 >gi|5524927|emb|CAB50866.1| deoxyribonuclease III (DNase III) [Homo sapiens] Length = 304 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 1 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 59 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 118 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199 >gi|48146355|emb|CAG33400.1| TREX1 [Homo sapiens] Length = 304 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 1 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 59 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 118 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199 >gi|18921087|gb|AAL82504.1| three prime repair exonuclease 1 [Homo sapiens] gi|54696966|gb|AAV38855.1| three prime repair exonuclease 1 [Homo sapiens] gi|54696968|gb|AAV38856.1| three prime repair exonuclease 1 [Homo sapiens] gi|61358085|gb|AAX41500.1| three prime repair exonuclease 1 [synthetic construct] gi|61358090|gb|AAX41501.1| three prime repair exonuclease 1 [synthetic construct] gi|119585287|gb|EAW64883.1| three prime repair exonuclease 1, isoform CRA_g [Homo sapiens] Length = 304 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 1 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 59 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 118 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199 >gi|71396663|ref|XP_802406.1| exonuclease [Trypanosoma cruzi strain CL Brener] gi|70862768|gb|EAN80960.1| exonuclease, putative [Trypanosoma cruzi] Length = 310 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 51/206 (24%), Gaps = 36/206 (17%) Query: 9 DYETF--GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 D+E VA +F V VD + + + +P + +TGIT Sbjct: 99 DFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHS-YVRPTKNPRLTSFCTALTGIT 157 Query: 65 PQKALRDGVVEAEFSRRIH----------------QFFSVPNTCI-----------IGYN 97 + E R + N C+ +N Sbjct: 158 QAQVDAAPR-LPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETHN 216 Query: 98 NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157 D + +D + S + ++ + + Sbjct: 217 PGWIDCERMICMVTDGPWDM--RKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRP 274 Query: 158 FKLQDLALANGIE-HVNAHDAKADVY 182 KL D+ G+ H + H D Sbjct: 275 RKLNDMLRKLGLSFHGHPHSGIDDSR 300 >gi|315226274|ref|ZP_07868062.1| oligoribonuclease [Parascardovia denticolens DSM 10105] gi|315120406|gb|EFT83538.1| oligoribonuclease [Parascardovia denticolens DSM 10105] Length = 254 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP 47 + D E G D+ D + + V D + ++ KP Sbjct: 35 LIWIDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKP 77 >gi|297243822|ref|ZP_06927752.1| oligoribonuclease [Gardnerella vaginalis AMD] gi|296888243|gb|EFH26985.1| oligoribonuclease [Gardnerella vaginalis AMD] Length = 235 Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 10/125 (8%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFIT- 61 + D E G D+ D + + V D + ++ KP+D + + Sbjct: 17 LIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMHT 76 Query: 62 --GITPQKALRDGVVEAEFSRRIHQ----FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115 G+ + ++G+ E +++ + F + N++ D + Sbjct: 77 SSGLVDE-WNKNGLPLEEAQKQVVEYVKRFLPARGKAHLAGNSVGSDKKFLDRYMPDLMA 135 Query: 116 DSYRW 120 + + Sbjct: 136 NLHYR 140 >gi|332215859|ref|XP_003257060.1| PREDICTED: three prime repair exonuclease 1-like [Nomascus leucogenys] Length = 314 Score = 45.6 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 11 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPLPPRVVDKLS 68 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 69 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 128 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 129 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 179 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 180 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 209 >gi|88810619|ref|ZP_01125876.1| DNA polymerase III subunit epsilon [Nitrococcus mobilis Nb-231] gi|88792249|gb|EAR23359.1| DNA polymerase III subunit epsilon [Nitrococcus mobilis Nb-231] Length = 166 Score = 45.6 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 8/110 (7%) Query: 32 RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91 R E F D + A+ I G++ + +E + F Sbjct: 2 RDGEPTGE--NFHRYINPDIEVEESALKIHGLSSAMLADKPL-FSEIAPYFCDFIR--GR 56 Query: 92 CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141 +I Y + D + + + W D ++++ Sbjct: 57 AVIAY---KLDQVAALEREFVHLMGRLLPPWKARGWDLDEQCSLQSLAML 103 >gi|294786667|ref|ZP_06751921.1| oligoribonuclease [Parascardovia denticolens F0305] gi|294485500|gb|EFG33134.1| oligoribonuclease [Parascardovia denticolens F0305] Length = 242 Score = 45.6 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP 47 + D E G D+ D + + V D + ++ KP Sbjct: 23 LIWIDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKP 65 >gi|38232887|ref|NP_938654.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae NCTC 13129] gi|38199145|emb|CAE48769.1| Putative helicase [Corynebacterium diphtheriae] Length = 373 Score = 45.6 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 9/102 (8%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72 G + R V Q E+++ F + P P + G++P++ +G Sbjct: 56 SGIHPSTSRLVTIDAVTFTEQGEEVDHF---FAVLNPESNPGPF--HLHGLSPEQIQ-EG 109 Query: 73 VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 ++ + + + + + +N + + R Sbjct: 110 KRYSQILKALDRLI---DGRTLLVHNAELVWGFIVSESKRAM 148 >gi|238750960|ref|ZP_04612457.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC 43380] gi|238710874|gb|EEQ03095.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC 43380] Length = 180 Score = 45.6 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 32/200 (16%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYL-PDPEAVF 59 + FV D ET G L V +V F+ + D DPEA+ Sbjct: 4 SEIFVSVDIETSGPVPGLFSLLSIGACLVHA-------PDVRFYAELKPDCTGFDPEALA 56 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRNIFYRNF 114 +TG Q G+ A+ ++ + + G N +F Sbjct: 57 VTGFNLQALATTGIAPADAMLQLSTWLTSHLQPSQKPVFTGLNAPFD----------WSF 106 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174 + Y + N + + Y G W + +L + Sbjct: 107 INYYFHKYTGNNP-FGFSALDIKAYFMGATGCTWSETKSSMMTQRLSAKGR-------PS 158 Query: 175 HDAKADVYATLALVWLIREK 194 H+A D L L++ K Sbjct: 159 HNALDDALFQAELFALMQNK 178 >gi|165905605|ref|NP_080343.4| 3'-5' exoribonuclease 1 [Mus musculus] gi|26380424|dbj|BAB29333.2| unnamed protein product [Mus musculus] gi|74228094|dbj|BAE38007.1| unnamed protein product [Mus musculus] Length = 345 Score = 45.6 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGL 185 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ ++ + + + R Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRL 244 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + ++ W N + + V R+ + + DG L D Sbjct: 245 KHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294 >gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] Length = 306 Score = 45.6 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 15/141 (10%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F+ D+ET + D + +I + + KP + P + I GI Sbjct: 2 NFIAIDFET--ANEKRDSACSIG--LTVVKNNQIIEQKYYLIKPNELR-FAPINISIHGI 56 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + +F+ N I+ +N R+ D+Y + Sbjct: 57 RASDVKNA-KTFDQLWPELLPYFT--NNIIMAHNAAFDLSVL------RHTLDAYHIPYP 107 Query: 124 NGNSRWDLLDVMRAIYAFSPD 144 N + + R + + Sbjct: 108 N-CRYGCTMILSRNFFPHLEN 127 >gi|18375535|ref|NP_338599.1| three prime repair exonuclease 1 isoform b [Homo sapiens] gi|12751309|gb|AAK07613.1|AF319566_2 3'-5' exonuclease TREX1 [Homo sapiens] gi|12751311|gb|AAK07614.1|AF319567_2 3'-5' exonuclease TREX1 [Homo sapiens] gi|12751315|gb|AAK07616.1|AF319569_1 3'-5' exonuclease TREX1 [Homo sapiens] gi|17865433|gb|AAD48774.2| 3'-5' exonuclease TREX1 [Homo sapiens] Length = 314 Score = 45.6 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 11 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 68 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 69 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 128 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 129 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 179 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 180 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 209 >gi|206968801|ref|ZP_03229756.1| exonuclease family protein [Bacillus cereus AH1134] gi|206735842|gb|EDZ53000.1| exonuclease family protein [Bacillus cereus AH1134] Length = 281 Score = 45.6 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 28/208 (13%) Query: 1 MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53 M N HF+++D E V+++ + IE Sbjct: 1 MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSEL---VKPSARL 56 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +TGIT + + + + QF + I + + D + + Sbjct: 57 TRHTTKLTGITKKDLMGVEK-FPQIIEKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLY 112 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + +N R DL + Y + S + LA E Sbjct: 113 GVECPSIEKEN---RIDLQKFVFQAY---------EELFEHTPSLQFAVEQLALTWE-GK 159 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY 201 H A AD T ++ + ++ Y Sbjct: 160 QHRALADAENTANILLKVYSERDINKRY 187 >gi|148244280|ref|YP_001218974.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA] gi|146326107|dbj|BAF61250.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA] Length = 181 Score = 45.6 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 12/36 (33%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 + + D E G D + A + D Q I Sbjct: 7 NLIWIDLEMTGLTPEKDVIIEIATIVTDAQLHIIAQ 42 >gi|321468566|gb|EFX79550.1| hypothetical protein DAPPUDRAFT_4269 [Daphnia pulex] Length = 199 Score = 45.2 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 21/195 (10%) Query: 5 FVIYDYE-TFGRDVALD---RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59 FVI D+E T G +F + ++ + F C+P + Sbjct: 5 FVIIDFEGTCGFLKNPCGIQEIIEFPAILLNGHNGSIEDEFHSF-CQPVLNPSLTNFCKK 63 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +TGIT + + + ++ N I Y + + Sbjct: 64 LTGITQDAVDKAPL-FKDVFVSFEEWLKK-NKVIGSYYSFAVVTDD----------PNDI 111 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD--GATSFKLQDLALANGIEH-VNAHD 176 + R +D + I + L+++ G E AH Sbjct: 112 RQFLQKQCRISEIDFPTYCQNWINIKIIFAHFYKNGNMQCLSLKNMIRDIGCEFQGRAHS 171 Query: 177 AKADVYATLALVWLI 191 D ++V + Sbjct: 172 GIDDARNIASIVQRL 186 >gi|72387357|ref|XP_844103.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62360611|gb|AAX81022.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800635|gb|AAZ10544.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 452 Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 23/197 (11%) Query: 5 FVIYDYETFGRDVALD----RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAV 58 ++ D E + D + GV VD + ++ F + +P + L P Sbjct: 144 LIVVDVEAT-CEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVRPQRNPLLTPFCK 202 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYD 116 +TGIT + + + + F T G D + + + Sbjct: 203 ALTGITQEDVDSAPT-----LQEVVKLFEQWYTETIPRGAKVALATDGPWDLKNFVHEHS 257 Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176 R ++ LD+ F G + L H Sbjct: 258 ILRDHISFPTIFYEYLDIRTTFAHFFNRG---------TPLKLVPMLERLQLTFEGREHC 308 Query: 177 AKADVYATLALVWLIRE 193 D L + Sbjct: 309 GFDDAVNIARLAVSMMR 325 >gi|30021640|ref|NP_833271.1| exonuclease [Bacillus cereus ATCC 14579] gi|29897195|gb|AAP10472.1| DNA polymerase III, epsilon chain [Bacillus cereus ATCC 14579] Length = 281 Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 28/208 (13%) Query: 1 MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53 M N HF+++D E V+++ + IE Sbjct: 1 MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSEL---VKPSARL 56 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +TGIT + + + + QF + I + + D + + Sbjct: 57 TRHTTKLTGITKKDLMGVEK-FPQIIEKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLY 112 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + +N R DL + Y + S + LA E Sbjct: 113 GVECPSIEKEN---RIDLQKFVFQAY---------EELFEHTPSLQFAVEQLALTWE-GK 159 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY 201 H A AD T ++ + ++ Y Sbjct: 160 QHRALADAENTANILLRVYSERDINKRY 187 >gi|290996841|ref|XP_002680990.1| predicted protein [Naegleria gruberi] gi|284094613|gb|EFC48246.1| predicted protein [Naegleria gruberi] Length = 175 Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 36 KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95 + KP+ A +TGIT + D + + +RI +F + +I Sbjct: 4 ETGEYVSSLVKPS--CPITMNARQLTGIT-SELFSDCLEFNQHIQRIKEFIGNDDVLLIA 60 Query: 96 YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD-- 153 +N +FD+ + F N S + D L ++ P ++ + Sbjct: 61 HNGKKFDERVLKYHFTDNL------SQFENCTLVDSLQMITKFNDDLPTVTRFSKKQQKL 114 Query: 154 -GATSFKLQDLALA-NGIEHVNAHDAKADVYATLAL 187 KL + G E +AH A +DV A + Sbjct: 115 VEKKDKKLVSIYKHIFGSEIEDAHFALSDVKALALI 150 >gi|290970253|ref|XP_002668076.1| predicted protein [Naegleria gruberi] gi|284081197|gb|EFC35332.1| predicted protein [Naegleria gruberi] Length = 111 Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 13/40 (32%) Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52 G D+ D + A + D I + +D L Sbjct: 2 TGLDIDSDHILEIAVIITDGNLNIIAQLDSLIVHQSDSVL 41 >gi|229815699|ref|ZP_04446024.1| hypothetical protein COLINT_02747 [Collinsella intestinalis DSM 13280] gi|229808615|gb|EEP44392.1| hypothetical protein COLINT_02747 [Collinsella intestinalis DSM 13280] Length = 321 Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 47/196 (23%), Gaps = 16/196 (8%) Query: 8 YDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDY----LPDPEAVFITG 62 D ET GR + + F+C D Y +P + I Sbjct: 135 IDIETTGRAPERGYIINVGWEIMELTSDAVPHDPQAFYCGIPDMYRETGVPLAD---IHH 191 Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122 I E + + + I +N F+D ++ Y + Sbjct: 192 IQWSDL-DGKTPFREDVKLQKELLKLMKRYPIMAHNAAFED-----SWFMLHLPGYAEAR 245 Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182 G + ++D + + P A+ + H D Sbjct: 246 RAG--KIIVIDSRHICRSVDGEVRTLPRESAPASLQNWARRRGTLAADENELHLGLDDTD 303 Query: 183 ATLALVWLIREKKPKL 198 L V K Sbjct: 304 LMLRTVQAEFNLKNMF 319 >gi|297204442|ref|ZP_06921839.1| exonuclease superfamily protein [Streptomyces sviceus ATCC 29083] gi|297148690|gb|EFH29078.1| exonuclease superfamily protein [Streptomyces sviceus ATCC 29083] Length = 189 Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 8/123 (6%) Query: 7 IYDYETF---GRDVAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61 + D E G + VD + +PA + +T Sbjct: 12 VVDVEATCWPGSPPPHAISEIIEIGLTVVDLSTAERVERHRILVRPARSEV-SDFCTELT 70 Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121 G+T + G+ E RR+ + ++R + Sbjct: 71 GLTQDEV-DGGLSFGEACRRLASE-HASGARPWASWGDYDRNQFTRQCGATKTPYPFGRR 128 Query: 122 WDN 124 N Sbjct: 129 HTN 131 >gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola] Length = 233 Score = 45.2 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 65/232 (28%), Gaps = 16/232 (6%) Query: 1 MTNH--FVIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54 M N ++ D ET G + L+ G + KP L + Sbjct: 1 MNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN--RLIE 58 Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114 +A I GIT + ++ + I +N FD + F Sbjct: 59 SDASKIHGITDDFLSDKP-SFKDIAKDFFNYIKNSELII---HNASFDVGFINQEFSMLT 114 Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVN 173 S N + D L + R ++ + R S ++ A+ + Sbjct: 115 KKIQDIS--NFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGK 172 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225 + ++ I+ + K++ K+I +H Sbjct: 173 LYLLMTSGQESIIFNKNIQNE-RNFRYIKKSITKKHRFLKIIKANKTELKLH 223 >gi|291164801|gb|ADD80831.1| oligoribonuclease [Rhodococcus phage ReqiDocB7] Length = 207 Score = 45.2 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV 42 M+ + F++ D ET G + + Q E I++ + Sbjct: 1 MSFNGFILLDLETTGLKPSEGHILELGMALYSPQLEMIDAFQS 43 >gi|195054679|ref|XP_001994252.1| GH11306 [Drosophila grimshawi] gi|193896122|gb|EDV94988.1| GH11306 [Drosophila grimshawi] Length = 187 Score = 45.2 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 15/47 (31%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51 V D E G D+ D+ + + + D+ F + Sbjct: 14 IVWMDLEMTGLDINTDQILELSCIITDKHLNIKSEGPSFAIRHPQHV 60 >gi|26379605|dbj|BAB29127.2| unnamed protein product [Mus musculus] Length = 345 Score = 45.2 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 5 FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 I D+E G +F V ++ +IE T + +P + + + Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGL 185 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113 TGIT + R + +++ ++ + + + R Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRL 244 Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 + ++ W N + + V R+ + + DG L D Sbjct: 245 KHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294 >gi|332667991|ref|YP_004450779.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] gi|332336805|gb|AEE53906.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] Length = 180 Score = 45.2 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 6/120 (5%) Query: 4 HFVIYDYETF---GRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59 +F+I+D E GR + + + V ++ E + L Sbjct: 2 NFIIFDLEATCWEGRPPSKVQEVIEIGAVLMNGYGEVEAEFSRMVRPILNPRL-SAYCQE 60 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 +T I + R + + + + I + D + + Sbjct: 61 LTNIKQTEVDRA-SIFPVVVESFQDWGLMLDEDYILCSWGGMDKKLLLQDCQLHDIEDEW 119 >gi|7705353|ref|NP_057465.1| three prime repair exonuclease 1 isoform a [Homo sapiens] gi|47606216|sp|Q9NSU2|TREX1_HUMAN RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5' exonuclease TREX1; AltName: Full=DNase III gi|12751313|gb|AAK07615.1|AF319568_1 3'-5' exonuclease TREX1-like protein [Homo sapiens] gi|23272145|gb|AAH23630.1| Three prime repair exonuclease 1 [Homo sapiens] gi|182888323|gb|AAI60084.1| Three prime repair exonuclease 1 [synthetic construct] gi|189054807|dbj|BAG37636.1| unnamed protein product [Homo sapiens] Length = 369 Score = 45.2 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 66 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 123 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 124 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 183 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 184 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 234 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 235 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 264 >gi|118098336|ref|XP_424602.2| PREDICTED: similar to Exonuclease domain containing 1 [Gallus gallus] Length = 660 Score = 45.2 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 52/205 (25%), Gaps = 31/205 (15%) Query: 5 FVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60 ++ D+E+ +F V ++ F +P + + + Sbjct: 24 LLVLDFESTCWRDARQRRPEIIEFPAVLLNAATGRIEAEFHTF-VQPQEQPVLSEFCTTL 82 Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 TG+T ++ +GV + ++ + + RN + Sbjct: 83 TGVTQKQV-DEGVPLHICLSQFLKWLQE---------IQKEKKILFSSDIPRNAIPEAKL 132 Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE---------- 170 + WDL + Y + P + K A N Sbjct: 133 CTFVTWTDWDLG--VCLHYECKRKQLWKPDIFNSWIDLKATYRAFYNRKPKGLSGALQYV 190 Query: 171 ----HVNAHDAKADVYATLALVWLI 191 H D T L W + Sbjct: 191 GLAFVGREHSGLDDSRNTARLAWRL 215 >gi|300777777|ref|ZP_07087635.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium gleum ATCC 35910] gi|300503287|gb|EFK34427.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium gleum ATCC 35910] Length = 184 Score = 45.2 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 60/210 (28%), Gaps = 28/210 (13%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 F D+ET + + V + + +E+ + + KP + + GI Sbjct: 3 FCAIDFET--ATHEKSSACEMG-ICVVQDSKIVET-KTWLIKPPSFPYFSKFNIAVHGIQ 58 Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 P+ E ++ +N FD R Sbjct: 59 PEDVKDAP-TFDEIWYEAQDMMY---GSLMIAHNAGFDASVLR----------------- 97 Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 G + + Y S + + L+ LA + I+ + H A AD Sbjct: 98 GCLEHYGMFTPKLNYLCSIQLAKKSWNY--LPKYGLKPLAEYHKIDFTH-HRAGADAEVC 154 Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKL 214 + L EK K +++KL Sbjct: 155 AKISLLAFEKLFLTSNDEVHDYMKAKIKKL 184 >gi|332816811|ref|XP_003309834.1| PREDICTED: three prime repair exonuclease 1-like [Pan troglodytes] Length = 369 Score = 45.2 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%) Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44 + +D E G + + + + V R +ES Sbjct: 66 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 123 Query: 45 CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100 A P A ITG++ G + + F C++ +N R Sbjct: 124 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 183 Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 +D + S +G D + ++ + + PS S+ L Sbjct: 184 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 234 Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189 + G ++H A+ DV A L++ Sbjct: 235 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 264 >gi|290474872|ref|YP_003467752.1| Exonuclease [Xenorhabdus bovienii SS-2004] gi|289174185|emb|CBJ80974.1| Exonuclease [Xenorhabdus bovienii SS-2004] Length = 186 Score = 45.2 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 56/207 (27%), Gaps = 30/207 (14%) Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58 M ++ D ET G + V + ++ D DPE++ Sbjct: 1 MRKSEVYISVDVETSGPVPGVFSLLSIGACLVHQ-----AEVAIYLELQPDSPEHDPESL 55 Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRNIFYRN 113 +TG+ + +DG+ + + + +G N F Sbjct: 56 AVTGLDLMQLEQDGLPPSAAMHQFKVWIESVIDPGQKAIFVGLNTPFD------WSFINY 109 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 ++ Y G + D+ Y G W S L+ Sbjct: 110 YFYKYVGINPFGFTAIDI-----KAYFMGAYGYSWSETKSSHMSAILKPC-------TKP 157 Query: 174 AHDAKADVYATLALVWLIREKKPKLFE 200 H+A D L L+ ++ Sbjct: 158 NHNALEDARFQAELFALMLARQTGDIR 184 >gi|219883058|ref|YP_002478222.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] gi|219862064|gb|ACL42405.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 187 Score = 45.2 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 44/188 (23%), Gaps = 27/188 (14%) Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63 +F D+E + V R +T D A I GI Sbjct: 8 NFTAIDFEA--ANSDRASACSVG-VTTVRDGLITGTTSWLIRPFTGLDSFDAYASRIHGI 64 Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123 + + R+ + +NI +D R+ F R + Sbjct: 65 DASMVIDA-QPLKDAMLRLSGIIGDG---PVLAHNITYDATVLRHSFELTGLGQPRNEFR 120 Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183 +L + G+ + HDA AD A Sbjct: 121 --------------------CTQTLSRAALQLEKTRLHVVTAYLGLPEFDNHDAAADSLA 160 Query: 184 TLALVWLI 191 + I Sbjct: 161 CARIALHI 168 >gi|167751276|ref|ZP_02423403.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702] gi|167655783|gb|EDR99912.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702] Length = 319 Score = 45.2 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 23/110 (20%), Gaps = 3/110 (2%) Query: 21 RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 Q V V E + +P +TGIT + Sbjct: 12 EIIQIGAVAV-TDGIVSEDFFSEYVRPRYYTELKGRIKKLTGITKNDLKNA-HDLTVVLK 69 Query: 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS-YRWSWDNGNSRW 129 ++ +I D D+ + W N Sbjct: 70 SFRKWLEKFGKDVIIVTWGPDDIPTLVKQCEFYERDTGWLPEWFNLQPLM 119 >gi|332528277|ref|ZP_08404282.1| oligoribonuclease [Hylemonella gracilis ATCC 19624] gi|332042297|gb|EGI78618.1| oligoribonuclease [Hylemonella gracilis ATCC 19624] Length = 195 Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 12/33 (36%) Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE 35 + V D E G D +R + A + E Sbjct: 19 QNLVWIDCEMTGLDPEKERLIEIAIIVTGPNLE 51 >gi|146344208|ref|YP_001202064.1| oligoribonuclease [Pseudomonas fluorescens SBW25] gi|40789171|emb|CAE84149.1| oligoribonuclease [Pseudomonas fluorescens] gi|146188020|emb|CAM96350.1| plant-inducible oligoribonuclease [Pseudomonas fluorescens SBW25] Length = 195 Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 29/193 (15%) Query: 7 IYDYETFGRDVALDR------PAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVF 59 D ET G DR + V D + + ST + +P L EAV Sbjct: 15 WLDLETTGFTELFDRRVYEHRILEIGAVVTDEHFTVLASTSIVIQQPMVRVLELSDEAV- 73 Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 + +G+ E + + + R + Sbjct: 74 -----TRMHTNNGL-FDEVVKSFTTLKA----------AEHQLIQFYRQNGVSKKVEPLC 117 Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 +D + + + F L+ ++ + H A Sbjct: 118 ----GSGIHFDRMFIEAQMPELHDFLYYRNLDISSVKEF-LKTISPSFEPSKRQQHRALP 172 Query: 180 DVYATLALVWLIR 192 D+ ++A R Sbjct: 173 DILESVAEAKTYR 185 >gi|241613193|ref|XP_002407353.1| YJER protein, putative [Ixodes scapularis] gi|215502777|gb|EEC12271.1| YJER protein, putative [Ixodes scapularis] Length = 171 Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 7/123 (5%) Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62 V D E G ++ + + A + D Q + D+ L + G Sbjct: 37 LVWIDLELTGLELETCKIMEIACLVTDGQLNLLSEGIDIAIHQPDEVLEGMNDWCKEHHG 96 Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117 + Q V E +R+ S P C + N + D + Sbjct: 97 KSGLTQACRESSVTVEEAEQRVLSLVSQLVPPGKCHLAGNTVYMDRLFLARYMPELNSYL 156 Query: 118 YRW 120 + Sbjct: 157 HYR 159 >gi|299472868|emb|CBN80437.1| EsV-1-139 [Ectocarpus siliculosus] Length = 269 Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 14/34 (41%) Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39 D ET G D + + V DR +I+S Sbjct: 44 FWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDS 77 >gi|218231753|ref|YP_002368350.1| exonuclease [Bacillus cereus B4264] gi|296504043|ref|YP_003665743.1| exonuclease [Bacillus thuringiensis BMB171] gi|218159710|gb|ACK59702.1| exonuclease family protein [Bacillus cereus B4264] gi|296325095|gb|ADH08023.1| exonuclease [Bacillus thuringiensis BMB171] Length = 281 Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 28/208 (13%) Query: 1 MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53 M N HF+++D E V+++ + IE Sbjct: 1 MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSEL---VKPSARL 56 Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113 +TGIT + + + + QF + I + + D + + Sbjct: 57 TRHTTKLTGITKKDLMGVEK-FPQIIEKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLY 112 Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173 + +N R DL + Y + S + LA E Sbjct: 113 GVECPSIEKEN---RIDLQKFVFQAY---------EELFEHTPSLQFAVEQLALTWE-GK 159 Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY 201 H A AD T ++ + ++ Y Sbjct: 160 QHRALADAENTANILLKVYSERDINKRY 187 >gi|330799210|ref|XP_003287640.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum] gi|325082367|gb|EGC35851.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum] Length = 557 Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 12/108 (11%) Query: 9 DYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67 D ET G VA D + + + D F+ + I G T + Sbjct: 286 DTETTGLSVATDEITEISIIDLYDG--------SHFYKLINPTTTVSS