RPSBLAST alignment for GI: 254780661 and conserved domain: TIGR01407
>gnl|CDD|162341 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. Length = 850
Score = 53.7 bits (129), Expect = 9e-08
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
+ + D ET G ++ D+ Q G+ V E +++ F + P P +TGI
Sbjct: 2 YAVVDLETTGTQLSFDKIIQI-GIVVVEDGEIVDT----FHTDVNPNEPIPPFIQELTGI 56
Query: 64 TPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SYRWS 121
+ + +A FS+ + + + I +N+ FD N + D Y
Sbjct: 57 SDNM-----LQQAPYFSQVAQEIYDLLEDGIFVAHNVHFD----LNFLAKALKDCGYEP- 106
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
R D +++ + + P+ + S++L +L+ A G+ H N H A +D
Sbjct: 107 --LPKPRIDTVELAQIFF---------PTEE----SYQLSELSEALGLTHENPHRADSDA 151
Query: 182 YATLALVWLIREKKPKL 198
AT L+ L+ EK KL
Sbjct: 152 QATAELLLLLFEKMEKL 168