BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus
Liberibacter asiaticus str. psy62]
         (471 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score =  983 bits (2540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/471 (100%), Positives = 471/471 (100%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI
Sbjct: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW
Sbjct: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD
Sbjct: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI
Sbjct: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC
Sbjct: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL
Sbjct: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW
Sbjct: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE
Sbjct: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 29.6 bits (65), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G D   DR  +   V +    +   + +VF C   +     PEA+ + GIT 
Sbjct: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGITD 67

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
           +  L+D    +        FF+  N   I + N +FD
Sbjct: 68  E-FLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFD 102


>gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 186

 Score = 26.2 bits (56), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 323 RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPE 382
           R    L+LL QQ  L +  + I  K       + DS L  GF  ++    +D  LRT   
Sbjct: 119 RAFSGLSLL-QQNKLGECLEKIVGKTVILDVME-DSALMGGFIVEIGAHQIDASLRTQLL 176

Query: 383 QLSTL 387
           +L  +
Sbjct: 177 KLGCI 181


>gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score = 25.0 bits (53), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 410 HTLSEKEKQDWLEHRKKMLT 429
           +TLSE EK+ + EH KK+ +
Sbjct: 70  NTLSENEKKAFFEHEKKVTS 89


>gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 351

 Score = 24.3 bits (51), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 368 VDRQIMDRILRTAPEQLSTLN 388
           ++R I  + LRT+PE++  LN
Sbjct: 190 INRAICQKYLRTSPEKIILLN 210


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,767
Number of Sequences: 1233
Number of extensions: 13651
Number of successful extensions: 39
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 7
length of query: 471
length of database: 328,796
effective HSP length: 77
effective length of query: 394
effective length of database: 233,855
effective search space: 92138870
effective search space used: 92138870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)