Query gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1576
No_of_seqs 192 out of 453
Neff 4.7
Searched_HMMs 39220
Date Sun May 29 21:58:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780662.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam05088 Bac_GDH Bacterial NA 100.0 0 0 4321.0 176.9 1495 71-1572 1-1526(1526)
2 COG2902 NAD-specific glutamate 100.0 0 0 3775.9 154.5 1559 1-1575 1-1591(1592)
3 PTZ00324 glutamate dehydrogena 100.0 0 0 830.4 50.8 648 553-1320 310-998 (1020)
4 KOG2250 consensus 100.0 1E-28 2.7E-33 271.9 22.7 354 743-1174 64-430 (514)
5 PRK09414 glutamate dehydrogena 99.7 2.6E-14 6.5E-19 144.3 27.0 316 774-1178 74-406 (446)
6 PTZ00079 NADP-specific glutama 99.7 1.5E-13 3.7E-18 137.5 26.2 314 774-1176 97-427 (469)
7 COG0334 GdhA Glutamate dehydro 99.7 2.6E-13 6.6E-18 135.3 23.8 316 773-1183 50-378 (411)
8 pfam00208 ELFV_dehydrog Glutam 99.6 7.2E-13 1.8E-17 131.4 17.4 202 915-1181 1-204 (237)
9 cd01076 NAD_bind_1_Glu_DH NAD( 99.5 5.1E-12 1.3E-16 123.8 16.1 194 915-1177 1-197 (227)
10 cd05313 NAD_bind_2_Glu_DH NAD( 99.4 2.6E-10 6.7E-15 108.7 18.8 210 909-1179 2-217 (254)
11 cd05211 NAD_bind_Glu_Leu_Phe_V 99.2 3.7E-10 9.4E-15 107.4 13.7 185 928-1178 2-189 (217)
12 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 9.4E-07 2.4E-11 77.1 8.8 146 926-1148 3-153 (200)
13 smart00839 ELFV_dehydrog Gluta 98.3 1.2E-06 3E-11 76.3 6.2 75 1098-1181 19-94 (102)
14 pfam02812 ELFV_dehydrog_N Glu/ 97.0 0.013 3.2E-07 40.5 9.8 96 776-898 26-124 (131)
15 PRK05092 PII uridylyl-transfer 96.8 0.06 1.5E-06 34.5 16.9 120 497-623 692-812 (934)
16 PRK04374 PII uridylyl-transfer 95.8 0.19 4.8E-06 30.1 26.7 95 27-121 32-130 (869)
17 PRK04374 PII uridylyl-transfer 94.3 0.44 1.1E-05 26.8 15.4 17 239-255 199-215 (869)
18 PRK03381 PII uridylyl-transfer 93.3 0.64 1.6E-05 25.4 10.8 67 54-121 44-116 (781)
19 TIGR01693 UTase_glnD protein-P 92.1 0.87 2.2E-05 24.2 9.7 59 355-413 651-712 (903)
20 PRK05007 PII uridylyl-transfer 92.0 0.91 2.3E-05 24.0 27.1 90 27-116 36-130 (881)
21 PRK00275 glnD PII uridylyl-tra 90.0 1.3 3.4E-05 22.6 27.4 93 27-120 37-135 (894)
22 PRK01759 glnD PII uridylyl-tra 88.2 1.7 4.3E-05 21.6 25.8 92 27-118 23-119 (862)
23 TIGR02405 trehalos_R_Ecol treh 86.7 0.34 8.7E-06 27.8 1.5 35 323-358 21-55 (311)
24 cd04899 ACT_ACR-UUR-like_2 C-t 86.5 2.1 5.2E-05 20.9 8.2 31 88-118 1-31 (70)
25 PRK03059 PII uridylyl-transfer 85.8 2.2 5.6E-05 20.6 25.3 93 27-120 23-119 (857)
26 cd04925 ACT_ACR_2 ACT domain-c 81.7 3.1 7.9E-05 19.3 8.7 68 88-173 1-73 (74)
27 PRK07188 nicotinate phosphorib 81.0 0.93 2.4E-05 23.9 1.8 63 1033-1106 268-341 (355)
28 cd04900 ACT_UUR-like_1 ACT dom 79.9 3.5 8.9E-05 18.8 9.3 69 541-616 3-71 (73)
29 COG1222 RPT1 ATP-dependent 26S 78.4 1.5 3.8E-05 22.1 2.1 196 978-1235 116-328 (406)
30 cd04869 ACT_GcvR_2 ACT domains 77.1 4.1 0.00011 18.2 7.6 73 89-175 1-73 (81)
31 cd04873 ACT_UUR-ACR-like ACT d 76.7 3.9 0.0001 18.4 3.9 30 88-117 1-30 (70)
32 PRK05667 dnaG DNA primase; Val 72.3 0.14 3.7E-06 31.1 -4.4 51 997-1047 107-157 (600)
33 KOG0728 consensus 71.4 0.47 1.2E-05 26.5 -1.9 105 1092-1234 207-322 (404)
34 KOG2275 consensus 70.9 2.8 7.1E-05 19.7 2.0 103 884-995 187-300 (420)
35 TIGR02845 spore_V_AD stage V s 69.7 5.6 0.00014 17.0 3.3 53 929-985 203-260 (331)
36 cd01571 NAPRTase_B Nicotinate 68.0 4 0.0001 18.3 2.2 62 1035-1106 229-299 (302)
37 KOG0615 consensus 67.4 6.2 0.00016 16.6 3.1 144 792-937 217-374 (475)
38 PRK05912 tyrosyl-tRNA syntheta 63.5 5.6 0.00014 17.0 2.3 10 559-568 59-68 (402)
39 KOG0729 consensus 61.9 3.8 9.7E-05 18.5 1.2 88 1050-1149 197-298 (435)
40 cd04902 ACT_3PGDH-xct C-termin 61.0 8.2 0.00021 15.5 4.8 59 90-166 2-61 (73)
41 PRK13354 tyrosyl-tRNA syntheta 60.5 6.8 0.00017 16.3 2.3 10 559-568 64-73 (405)
42 PRK08662 nicotinate phosphorib 60.2 5.1 0.00013 17.4 1.6 62 1034-1106 244-314 (343)
43 TIGR01242 26Sp45 26S proteasom 59.3 1.9 4.8E-05 21.2 -0.7 147 949-1153 91-247 (364)
44 COG3108 Uncharacterized protei 58.3 6.2 0.00016 16.6 1.8 33 1051-1089 146-178 (185)
45 PRK11199 tyrA bifunctional cho 58.3 9 0.00023 15.2 6.0 26 1105-1130 212-237 (374)
46 PRK09790 hypothetical protein; 57.7 6.6 0.00017 16.4 1.8 19 947-965 34-52 (91)
47 TIGR01941 nqrF NADH:ubiquinone 56.4 7.9 0.0002 15.7 2.1 26 541-566 389-414 (425)
48 TIGR00478 tly hemolysin A; Int 56.3 0.92 2.3E-05 24.0 -2.7 33 784-825 58-91 (240)
49 pfam11814 DUF3335 Domain of un 55.6 9.8 0.00025 14.9 4.2 23 972-994 166-189 (228)
50 KOG3004 consensus 54.5 7.4 0.00019 15.9 1.7 75 326-406 71-147 (305)
51 cd03202 GST_C_etherase_LigE GS 54.0 10 0.00026 14.7 6.4 69 669-741 13-83 (124)
52 TIGR01660 narH nitrate reducta 53.9 4.8 0.00012 17.6 0.6 36 628-663 428-466 (495)
53 KOG0338 consensus 53.7 2.7 6.9E-05 19.8 -0.7 51 1133-1183 315-376 (691)
54 KOG2052 consensus 51.6 9.5 0.00024 15.0 1.8 20 634-653 462-481 (513)
55 PRK11589 gcvR glycine cleavage 50.1 12 0.0003 14.2 7.2 150 452-615 8-167 (183)
56 cd04903 ACT_LSD C-terminal ACT 49.5 12 0.0003 14.1 7.0 58 90-165 2-60 (71)
57 smart00843 Ftsk_gamma This dom 48.8 12 0.00031 14.0 4.6 47 1174-1223 5-51 (63)
58 pfam05951 Peptidase_M15_2 Bact 48.8 6.4 0.00016 16.5 0.6 33 1051-1088 115-148 (153)
59 PRK11091 aerobic respiration c 48.5 12 0.00031 14.0 4.7 21 1142-1162 530-550 (779)
60 pfam11711 Tim54 Inner membrane 47.9 12 0.0003 14.2 1.8 25 817-856 165-189 (378)
61 COG5514 Uncharacterized conser 47.5 5.1 0.00013 17.4 -0.1 18 972-990 79-96 (203)
62 pfam00345 Pili_assembly_N Gram 46.9 8.9 0.00023 15.2 1.1 73 86-158 17-90 (119)
63 pfam10089 consensus 46.9 7.7 0.0002 15.8 0.8 11 980-990 33-43 (47)
64 pfam09015 NgoMIV_restric NgoMI 45.9 12 0.00031 14.0 1.7 18 792-809 183-200 (277)
65 TIGR01501 MthylAspMutase methy 45.7 12 0.0003 14.1 1.6 14 933-946 99-112 (134)
66 KOG0726 consensus 45.7 7.1 0.00018 16.1 0.4 83 1051-1140 205-292 (440)
67 KOG2872 consensus 45.2 14 0.00035 13.6 1.9 119 542-683 69-193 (359)
68 pfam09825 BPL_N Biotin-protein 45.0 14 0.00035 13.6 2.4 21 640-660 240-260 (364)
69 pfam01764 Lipase_3 Lipase (cla 44.3 14 0.00036 13.5 3.5 67 888-960 5-71 (141)
70 pfam09397 Ftsk_gamma Ftsk gamm 43.9 14 0.00036 13.4 4.5 48 1174-1224 7-54 (67)
71 cd00148 PROF Profilin binds ac 43.3 14 0.00037 13.4 2.4 13 1011-1023 1-14 (127)
72 TIGR02143 trmA_only tRNA (urac 42.9 14 0.00035 13.5 1.5 10 472-481 78-87 (361)
73 cd03405 Band_7_HflC Band_7_Hfl 42.8 15 0.00037 13.3 2.7 15 356-370 100-114 (242)
74 cd04874 ACT_Af1403 N-terminal 42.7 15 0.00037 13.3 7.4 51 90-159 3-53 (72)
75 KOG3388 consensus 42.3 15 0.00038 13.3 3.7 94 1009-1108 9-117 (136)
76 KOG1755 consensus 42.1 13 0.00033 13.8 1.3 30 1010-1040 1-43 (128)
77 pfam04228 Zn_peptidase Putativ 41.9 15 0.00038 13.2 2.9 29 1318-1347 151-179 (292)
78 TIGR00513 accA acetyl-CoA carb 40.9 14 0.00035 13.5 1.3 22 208-229 79-100 (329)
79 TIGR02360 pbenz_hydroxyl 4-hyd 40.9 9.8 0.00025 14.9 0.5 56 552-610 191-246 (393)
80 cd03033 ArsC_15kD Arsenate Red 40.3 16 0.0004 13.0 3.3 16 1047-1062 68-83 (113)
81 PRK00194 hypothetical protein; 40.1 16 0.0004 13.0 8.3 69 87-174 3-71 (90)
82 cd04872 ACT_1ZPV ACT domain pr 40.0 16 0.00041 13.0 8.2 68 88-174 2-69 (88)
83 cd01304 FMDH_A Formylmethanofu 39.9 16 0.00041 13.0 2.8 12 564-575 36-47 (541)
84 PRK10512 selenocysteinyl-tRNA- 39.5 15 0.00038 13.2 1.3 23 153-175 114-136 (615)
85 PRK10783 mltD membrane-bound l 39.5 15 0.00038 13.2 1.3 21 629-649 191-211 (449)
86 COG1564 THI80 Thiamine pyropho 39.4 16 0.0004 13.0 1.4 113 861-991 6-131 (212)
87 TIGR01304 IMP_DH_rel_2 IMP deh 39.2 13 0.00033 13.8 0.9 62 991-1071 99-163 (376)
88 pfam02614 UxaC Glucuronate iso 38.9 16 0.00042 12.9 7.3 75 1119-1195 219-294 (465)
89 KOG0730 consensus 38.6 17 0.00042 12.8 5.1 204 929-1181 353-568 (693)
90 PRK10163 DNA-binding transcrip 38.2 17 0.00043 12.8 5.2 32 399-430 223-255 (271)
91 KOG3839 consensus 38.1 17 0.00043 12.8 2.3 40 956-995 118-166 (351)
92 COG3121 FimC P pilus assembly 37.1 17 0.00044 12.6 2.2 79 81-159 39-120 (235)
93 pfam04735 Baculo_helicase Bacu 37.1 17 0.00044 12.6 1.5 21 1058-1078 462-482 (1173)
94 PRK07830 consensus 37.0 17 0.00044 12.6 3.5 57 909-971 65-122 (267)
95 cd04875 ACT_F4HF-DF N-terminal 37.0 17 0.00044 12.6 7.1 68 89-174 1-69 (74)
96 TIGR00014 arsC arsenate reduct 36.8 7.5 0.00019 15.9 -0.6 18 550-567 35-52 (114)
97 pfam05397 Med15_fungi Mediator 36.7 18 0.00045 12.6 5.5 44 180-223 42-92 (115)
98 KOG0285 consensus 36.6 9.7 0.00025 14.9 -0.0 18 879-896 371-388 (460)
99 KOG2623 consensus 36.3 18 0.00045 12.6 2.3 58 989-1066 200-257 (467)
100 KOG1367 consensus 36.2 18 0.00046 12.5 1.5 20 609-629 147-166 (416)
101 TIGR01503 MthylAspMut_E methyl 36.1 18 0.00046 12.5 2.1 303 1200-1566 66-397 (481)
102 COG2844 GlnD UTP:GlnB (protein 35.8 18 0.00046 12.5 13.4 64 28-91 26-90 (867)
103 PRK12370 invasion protein regu 35.0 19 0.00047 12.4 3.1 12 1099-1110 177-188 (553)
104 TIGR02434 CobF precorrin-6A sy 34.8 12 0.0003 14.1 0.2 14 176-189 82-95 (259)
105 cd04926 ACT_ACR_4 C-terminal 34.8 19 0.00048 12.4 8.8 67 540-615 2-68 (72)
106 pfam11181 YflT Heat induced st 34.8 19 0.00048 12.4 3.1 45 877-943 25-69 (103)
107 TIGR01702 CO_DH_cata carbon-mo 34.6 13 0.00034 13.7 0.4 41 1100-1148 514-565 (647)
108 PTZ00316 Profilin; Provisional 34.5 19 0.00048 12.3 2.0 21 1011-1031 2-35 (150)
109 TIGR02177 PorB_KorB 2-oxoacid: 34.5 19 0.00048 12.3 3.2 32 537-570 41-77 (302)
110 cd06536 CIDE_N_ICAD CIDE_N dom 34.2 19 0.00049 12.3 2.9 57 922-981 13-73 (80)
111 pfam02556 SecB Preprotein tran 34.1 19 0.00049 12.3 2.1 42 308-349 75-127 (147)
112 pfam04571 Lipin_N lipin, N-ter 33.9 17 0.00044 12.7 0.9 10 145-154 81-90 (111)
113 COG3830 ACT domain-containing 33.8 19 0.00049 12.2 5.3 37 87-123 3-39 (90)
114 PRK13760 putative RNA-associat 33.3 20 0.0005 12.2 5.3 43 1143-1189 69-113 (233)
115 cd05152 MPH2' Macrolide 2'-Pho 33.1 7.6 0.00019 15.8 -1.0 67 961-1034 189-257 (276)
116 KOG4585 consensus 33.0 20 0.00051 12.1 1.4 34 955-991 118-151 (326)
117 PRK04351 hypothetical protein; 32.9 20 0.00051 12.1 2.9 63 998-1061 3-74 (151)
118 TIGR00472 pheT_bact phenylalan 32.8 20 0.00051 12.1 1.3 12 220-231 308-319 (848)
119 KOG4207 consensus 32.7 11 0.00027 14.5 -0.3 12 409-420 42-53 (256)
120 KOG4175 consensus 32.4 20 0.00051 12.1 2.7 31 538-568 16-49 (268)
121 cd04897 ACT_ACR_3 ACT domain-c 32.4 20 0.00051 12.1 4.1 68 87-170 1-70 (75)
122 COG2321 Predicted metalloprote 32.2 20 0.00052 12.0 2.9 27 1319-1346 149-175 (295)
123 TIGR01283 nifE nitrogenase MoF 32.1 20 0.00052 12.0 1.1 19 552-570 222-240 (470)
124 COG3186 Phenylalanine-4-hydrox 32.0 20 0.00052 12.0 4.5 67 1208-1294 66-133 (291)
125 COG1080 PtsA Phosphoenolpyruva 32.0 20 0.00052 12.0 1.3 14 604-617 38-51 (574)
126 KOG0727 consensus 31.9 19 0.00048 12.3 0.8 152 976-1154 118-280 (408)
127 KOG0296 consensus 31.7 21 0.00053 12.0 1.3 55 766-826 118-172 (399)
128 PRK11190 putative DNA uptake p 31.6 21 0.00053 12.0 6.0 16 976-991 53-68 (192)
129 PRK08249 cystathionine gamma-s 31.2 20 0.00051 12.1 0.8 13 465-477 64-76 (398)
130 LOAD_ACT consensus 30.9 21 0.00054 11.9 6.6 65 89-171 1-65 (76)
131 TIGR00576 dut dUTP diphosphata 30.8 5.4 0.00014 17.2 -2.1 20 1135-1154 76-95 (151)
132 PRK09971 xanthine dehydrogenas 30.5 22 0.00055 11.8 3.1 150 1009-1177 118-277 (292)
133 COG2352 Ppc Phosphoenolpyruvat 30.4 22 0.00055 11.8 1.2 147 658-851 206-376 (910)
134 TIGR01481 ccpA catabolite cont 30.3 22 0.00055 11.8 1.4 66 643-709 196-263 (332)
135 TIGR00884 guaA_Cterm GMP synth 30.2 13 0.00034 13.6 -0.2 48 676-730 61-110 (319)
136 COG2969 SspB Stringent starvat 30.1 22 0.00056 11.8 1.3 42 94-135 6-52 (155)
137 TIGR00170 leuC 3-isopropylmala 30.1 15 0.00038 13.3 0.0 22 619-640 390-411 (472)
138 cd05168 PI4Kc_III_beta Phospho 30.0 22 0.00056 11.8 6.9 61 1086-1148 144-204 (293)
139 PRK05751 preprotein translocas 30.0 22 0.00056 11.8 2.2 42 309-350 68-120 (147)
140 pfam02438 Adeno_100 Late 100kD 30.0 22 0.00056 11.8 4.2 156 1299-1477 264-431 (583)
141 TIGR01469 cobA_cysG_Cterm urop 29.9 22 0.00056 11.7 2.8 121 435-566 27-190 (242)
142 PRK13525 glutamine amidotransf 29.9 17 0.00045 12.6 0.4 15 553-567 13-27 (191)
143 smart00764 Citrate_ly_lig Citr 29.9 22 0.00056 11.7 1.2 48 979-1029 24-72 (182)
144 COG3612 Uncharacterized protei 29.8 22 0.00056 11.7 7.1 30 1195-1224 28-57 (157)
145 PRK02925 glucuronate isomerase 29.7 22 0.00056 11.7 7.0 105 1120-1226 225-347 (466)
146 COG0742 N6-adenine-specific me 29.5 22 0.00057 11.7 4.2 106 910-1037 49-161 (187)
147 TIGR01420 pilT_fam twitching m 29.3 18 0.00047 12.4 0.4 59 425-484 2-62 (350)
148 CHL00004 psbD photosystem II p 29.2 22 0.00057 11.7 1.6 12 947-958 192-203 (353)
149 KOG1231 consensus 28.8 14 0.00035 13.6 -0.3 123 969-1129 116-241 (505)
150 pfam00952 Bunya_nucleocap Buny 28.8 23 0.00058 11.6 2.2 23 1269-1291 80-102 (228)
151 PRK00257 erythronate-4-phospha 28.6 20 0.0005 12.1 0.5 113 852-990 17-147 (379)
152 TIGR00551 nadB L-aspartate oxi 28.4 23 0.00059 11.5 2.2 67 719-790 137-206 (546)
153 COG3805 DodA Aromatic ring-cle 28.1 23 0.0006 11.5 1.8 23 978-1004 8-30 (120)
154 COG1092 Predicted SAM-dependen 28.0 23 0.0006 11.5 1.9 150 868-1034 176-340 (393)
155 PRK04923 ribose-phosphate pyro 28.0 23 0.0006 11.5 1.8 26 877-905 164-189 (319)
156 COG1770 PtrB Protease II [Amin 27.8 24 0.0006 11.5 1.1 77 776-863 482-577 (682)
157 COG3877 Uncharacterized protei 27.4 24 0.00061 11.4 3.0 26 331-356 71-96 (122)
158 COG2049 DUR1 Allophanate hydro 27.4 24 0.00061 11.4 2.7 67 407-480 8-74 (223)
159 PRK02491 putative deoxyribonuc 27.3 22 0.00056 11.7 0.5 38 318-366 285-322 (328)
160 pfam03401 Bug Tripartite trica 27.2 24 0.00061 11.4 6.4 110 873-1001 73-195 (274)
161 PRK01203 prefoldin subunit alp 27.0 24 0.00061 11.4 0.7 13 815-828 71-83 (130)
162 TIGR00420 trmU tRNA (5-methyla 27.0 16 0.00041 12.9 -0.2 115 161-283 65-205 (394)
163 pfam00356 LacI Bacterial regul 26.9 24 0.00062 11.4 2.7 27 323-349 19-45 (46)
164 smart00151 SWIB SWI complex, B 26.9 24 0.00062 11.3 3.1 27 1032-1060 3-29 (77)
165 KOG2492 consensus 26.9 24 0.00062 11.3 0.9 19 792-810 332-350 (552)
166 COG0744 MrcB Membrane carboxyp 26.9 24 0.00062 11.3 5.7 100 598-729 76-179 (661)
167 TIGR00986 3a0801s05tom22 mitoc 26.8 24 0.00062 11.3 2.4 42 814-855 66-108 (152)
168 PRK07260 enoyl-CoA hydratase; 26.7 24 0.00062 11.3 0.7 15 957-971 104-118 (260)
169 PRK05439 pantothenate kinase; 26.5 25 0.00063 11.3 3.7 54 448-503 82-150 (312)
170 COG1774 Uncharacterized homolo 26.2 25 0.00064 11.2 1.3 104 1111-1244 130-234 (265)
171 COG2090 Uncharacterized protei 26.2 25 0.00064 11.2 1.6 20 879-898 36-55 (141)
172 PRK11385 hypothetical protein; 26.1 25 0.00064 11.2 5.4 79 80-159 46-134 (245)
173 cd03868 M14_CPD_I The first ca 26.0 25 0.00064 11.2 2.3 17 207-223 153-169 (372)
174 COG5322 Predicted dehydrogenas 25.9 25 0.00064 11.2 2.9 68 928-1008 146-213 (351)
175 pfam02582 DUF155 Uncharacteriz 25.9 25 0.00064 11.2 9.2 84 1185-1284 76-164 (174)
176 pfam07712 SURNod19 Stress up-r 25.9 25 0.00064 11.2 1.9 45 737-781 31-76 (382)
177 PRK08230 tartrate dehydratase 25.8 25 0.00065 11.2 3.4 95 876-1006 137-232 (299)
178 KOG1707 consensus 25.5 26 0.00065 11.1 2.5 51 631-685 153-205 (625)
179 TIGR00091 TIGR00091 tRNA (guan 25.4 12 0.0003 14.1 -1.2 10 145-154 102-111 (216)
180 TIGR02264 gmx_para_CXXCG Myxoc 25.3 26 0.00066 11.1 1.0 67 460-528 46-140 (247)
181 COG3221 PhnD ABC-type phosphat 25.3 26 0.00066 11.1 4.7 88 1035-1130 56-147 (299)
182 PRK09918 putative periplasmic 25.2 26 0.00066 11.1 3.4 78 81-159 36-114 (230)
183 COG3181 Uncharacterized protei 25.2 26 0.00066 11.1 5.4 157 872-1060 116-301 (319)
184 COG2805 PilT Tfp pilus assembl 25.1 26 0.00066 11.1 2.4 53 424-478 4-57 (353)
185 KOG2266 consensus 25.0 26 0.00066 11.1 2.1 18 889-906 539-556 (594)
186 pfam02078 Synapsin Synapsin, N 25.0 22 0.00057 11.7 0.2 21 285-305 63-83 (105)
187 KOG2825 consensus 24.8 26 0.00067 11.0 1.8 97 881-1006 21-139 (323)
188 COG1962 MtrH Tetrahydromethano 24.8 15 0.00039 13.2 -0.7 11 97-107 100-110 (313)
189 pfam01842 ACT ACT domain. This 24.7 26 0.00067 11.0 7.6 32 89-120 2-33 (66)
190 TIGR02812 fadR_gamma fatty aci 24.5 27 0.00068 11.0 0.7 161 23-225 4-195 (275)
191 TIGR01114 mtrH N5-methyltetrah 24.5 15 0.00038 13.3 -0.8 133 419-566 54-192 (323)
192 PHA00684 hypothetical protein 24.4 27 0.00068 11.0 1.1 101 761-901 12-115 (143)
193 TIGR01237 D1pyr5carbox2 delta- 24.4 27 0.00068 11.0 2.3 181 128-370 44-253 (518)
194 KOG2285 consensus 24.4 27 0.00068 11.0 4.0 41 1244-1285 591-638 (777)
195 TIGR02152 D_ribokin_bact ribok 24.0 27 0.00069 10.9 0.8 34 85-120 53-86 (303)
196 PRK11546 zraP zinc resistance 24.0 27 0.00069 10.9 4.3 10 1161-1170 38-47 (139)
197 PHA00675 hypothetical protein 24.0 27 0.00069 10.9 0.7 11 646-656 58-68 (78)
198 pfam02082 Rrf2 Transcriptional 23.6 27 0.0007 10.9 0.7 13 819-831 58-70 (82)
199 pfam07446 GumN GumN protein. T 23.4 28 0.00071 10.8 12.2 99 1279-1384 70-176 (259)
200 pfam03634 TCP TCP family trans 23.4 28 0.00071 10.8 3.1 15 1470-1484 26-40 (123)
201 PRK11026 ftsX cell division pr 23.3 28 0.00071 10.8 1.7 16 927-942 290-305 (309)
202 TIGR00738 rrf2_super rrf2 fami 23.1 28 0.0007 10.9 0.4 60 544-621 67-126 (133)
203 COG4669 EscJ Type III secretor 23.1 28 0.00072 10.8 2.3 39 340-383 71-109 (246)
204 KOG3564 consensus 23.1 26 0.00066 11.1 0.2 15 778-792 140-154 (604)
205 PRK13011 formyltetrahydrofolat 22.9 28 0.00072 10.8 7.8 254 535-818 3-279 (287)
206 pfam11990 DUF3487 Protein of u 22.9 25 0.00064 11.3 0.1 12 1242-1253 19-30 (122)
207 cd04879 ACT_3PGDH-like ACT_3PG 22.8 28 0.00072 10.8 5.4 58 90-165 2-60 (71)
208 TIGR01086 fucA L-fuculose phos 22.7 27 0.00069 10.9 0.2 52 959-1018 24-79 (214)
209 KOG1200 consensus 22.6 29 0.00073 10.7 2.1 25 1108-1132 167-191 (256)
210 PRK13372 pcmA protocatechuate 22.5 29 0.00073 10.7 1.2 15 952-966 331-345 (444)
211 KOG1834 consensus 22.5 29 0.00073 10.7 2.1 82 876-971 684-775 (952)
212 PRK08178 acetolactate synthase 22.4 29 0.00073 10.7 7.3 67 85-171 6-72 (96)
213 cd00614 CGS_like CGS_like: Cys 22.4 29 0.00074 10.7 1.2 15 464-478 39-53 (369)
214 cd04893 ACT_GcvR_1 ACT domains 22.3 29 0.00074 10.7 4.0 32 87-118 1-32 (77)
215 PRK10153 DNA-binding transcrip 22.2 29 0.00074 10.7 3.5 52 1226-1279 323-374 (512)
216 TIGR00496 frr ribosome recycli 22.2 29 0.00074 10.7 1.4 43 147-189 88-134 (177)
217 pfam06187 DUF993 Protein of un 22.1 29 0.00074 10.7 1.6 30 621-657 44-73 (382)
218 TIGR03289 frhB coenzyme F420 h 22.1 16 0.00041 12.9 -1.0 49 973-1030 122-171 (275)
219 pfam03699 UPF0182 Uncharacteri 22.1 29 0.00074 10.6 0.5 68 875-995 550-618 (771)
220 pfam08955 DUF1901 Domain of un 22.1 25 0.00064 11.2 -0.0 42 128-169 44-86 (103)
221 PRK05981 enoyl-CoA hydratase; 21.7 30 0.00076 10.6 1.5 15 957-971 107-121 (266)
222 pfam07766 LETM1 LETM1-like pro 21.6 30 0.00076 10.6 6.3 62 1233-1294 31-94 (268)
223 TIGR00448 rpoE DNA-directed RN 21.5 30 0.00076 10.6 2.1 30 409-438 10-39 (184)
224 pfam06708 DUF1195 Protein of u 21.5 30 0.00076 10.6 0.7 102 411-519 29-136 (155)
225 KOG3974 consensus 21.4 30 0.00076 10.5 3.5 79 1236-1330 222-302 (306)
226 KOG2811 consensus 21.4 30 0.00077 10.5 8.5 249 1127-1437 99-384 (420)
227 PRK11705 cyclopropane fatty ac 21.3 30 0.00077 10.5 1.5 22 557-578 21-42 (383)
228 PRK05355 phosphoserine aminotr 21.3 30 0.00077 10.5 0.8 26 834-859 40-65 (360)
229 TIGR00758 UDG_fam4 uracil-DNA 21.3 29 0.00073 10.7 0.2 53 949-1016 120-173 (185)
230 PRK10411 DNA-binding transcrip 21.3 30 0.00077 10.5 2.4 125 994-1151 65-193 (240)
231 cd04883 ACT_AcuB C-terminal AC 21.2 30 0.00077 10.5 4.2 31 89-119 3-33 (72)
232 pfam03181 BURP BURP domain. Th 21.2 30 0.00077 10.5 3.1 68 328-398 36-109 (217)
233 pfam07171 MlrC_C MlrC C-termin 21.1 30 0.00077 10.5 0.3 120 799-958 17-142 (177)
234 pfam12213 Dpoe2NT DNA polymera 21.1 30 0.00077 10.5 2.5 36 333-368 4-39 (72)
235 COG4321 Uncharacterized protei 21.0 29 0.00074 10.7 0.1 29 774-802 10-38 (102)
236 COG5478 Predicted small integr 21.0 31 0.00078 10.5 4.3 13 1322-1334 10-22 (141)
237 cd03865 M14_CPE_H Peptidase M1 21.0 31 0.00078 10.5 2.3 10 926-935 264-273 (402)
238 PRK11636 mrcA peptidoglycan sy 20.9 31 0.00078 10.5 4.5 12 220-231 165-176 (850)
239 TIGR00292 TIGR00292 thiazole b 20.9 31 0.00078 10.5 0.3 19 558-576 165-183 (283)
240 pfam06798 PrkA PrkA serine pro 20.9 31 0.00078 10.5 3.1 24 1421-1444 225-249 (254)
241 PRK06143 enoyl-CoA hydratase; 20.8 31 0.00078 10.4 1.4 15 955-969 104-118 (260)
242 pfam00912 Transgly Transglycos 20.7 31 0.00079 10.4 4.3 94 601-731 16-114 (174)
243 pfam05540 Serpulina_VSP Serpul 20.6 31 0.00079 10.4 0.9 32 558-595 320-351 (377)
244 KOG4354 consensus 20.6 31 0.00079 10.4 0.6 35 348-382 26-60 (340)
245 PRK03846 adenylylsulfate kinas 20.6 9.3 0.00024 15.0 -2.5 26 1097-1125 58-83 (198)
246 KOG0652 consensus 20.6 31 0.00079 10.4 2.1 18 972-990 308-325 (424)
247 pfam09710 Trep_dent_lipo Trepo 20.6 5.7 0.00015 16.9 -3.6 201 809-1077 104-331 (394)
248 PHA02110 hypothetical protein 20.5 27 0.0007 10.9 -0.1 13 214-226 33-45 (98)
249 TIGR01152 psbD photosystem II 20.4 31 0.0008 10.4 1.4 245 211-496 17-268 (352)
250 cd03863 M14_CPD_II The second 20.4 31 0.0008 10.4 2.2 16 208-223 154-169 (375)
251 KOG2666 consensus 20.3 31 0.0008 10.4 3.7 18 626-643 232-249 (481)
252 TIGR02137 HSK-PSP phosphoserin 20.3 31 0.0008 10.4 2.1 11 558-568 99-109 (203)
253 pfam02990 EMP70 Endomembrane p 20.2 20 0.0005 12.2 -0.9 17 903-919 481-497 (518)
254 cd04870 ACT_PSP_1 CT domains f 20.1 32 0.00081 10.3 7.3 67 89-175 1-67 (75)
255 COG1852 Uncharacterized conser 20.0 12 0.0003 14.1 -2.0 64 800-870 123-186 (209)
No 1
>pfam05088 Bac_GDH Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.
Probab=100.00 E-value=0 Score=4321.01 Aligned_cols=1495 Identities=43% Similarity=0.687 Sum_probs=1450.1
Q ss_pred EEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCC-CCCCCEEEE
Q ss_conf 7872476555899886579999478774389999999997799127998464899988997374236778-876633699
Q gi|254780662|r 71 CIDIREVEGINPSGISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCG-IAQKQISLI 149 (1576)
Q Consensus 71 ~~v~~p~~~~~gw~s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~-~~~~~ES~I 149 (1576)
|+++|| .+.|||+++||+|+||+||||||||||+|+|+++|+++|.++|||+.|+||++|+|+++.+.+ .++.+||||
T Consensus 1 vrv~np-~~~~g~~~~~tvi~iv~dDmPFLVDSv~~~l~~~g~~i~~~~hpvl~v~Rd~~G~l~~~~~~~~~~~~~ES~i 79 (1526)
T pfam05088 1 VRVFNP-LEEHGWQSTHTVVEIVNDDMPFLVDSVTMELNRLGLTIHLLLHPVLRVRRDKDGELTEVLPADDSGGLRESLI 79 (1526)
T ss_pred CEECCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCEEEECCCCCCCCCCEEEE
T ss_conf 942799-8766787897699996599770999999999977996589976828999989997887237788999715899
Q ss_pred EEEECCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 99957999-899999999999999999999977999999999999985406775--311488999999997289188104
Q gi|254780662|r 150 QIHCLKIT-PEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFCHLTGI--KEYAVEALTFLNWLNEDNFQFMGM 226 (1576)
Q Consensus 150 ~Ieidr~~-~e~~~~L~~~L~~VL~dVr~aV~Dw~aM~~rl~~l~~~L~~~~~~--~ee~~Ea~aFL~WL~ddhFtFLGy 226 (1576)
||||++++ ++..++|+++|++||+||+++|+||++|++++.+++++++..+++ +++.+|+++||+||+|||||||||
T Consensus 80 ~iei~~~~~~~~~~~l~~~l~~vL~dv~~~v~D~~~M~~~~~~~~~~l~~~~~~~~~~e~~Ea~aFL~WL~ddhFtFLGy 159 (1526)
T pfam05088 80 HIEIDRLTDAEELEALEEELERVLADVRAAVEDWPAMRARLRELAAELATAPPPVDAEELEEAAAFLRWLADDHFTFLGY 159 (1526)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99955989989999999999999999999982099999999999999862789888124799999999987199798204
Q ss_pred EEEEEECCCCCCEEEECCCCCCCCCCCCCC--CCCCCCCCCHH-HHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE
Q ss_conf 799841377751363228874110038531--12541018978-887612698189984487331003677648999878
Q gi|254780662|r 227 RYHPLVAGQKQVKLDHDMPTELGILRDSSI--VVLGFDRVTPA-TRSFPEGNDFLIITKSNVISVIYRRTYMDHIGIKHF 303 (1576)
Q Consensus 227 ReY~l~~~~~~~~L~~~~~sgLGILR~~~~--~~~~~~~l~~~-~r~~~~~~~~LivtKan~rS~VHR~aylDyIgVK~f 303 (1576)
|+|++...+++..|.++++++|||||+... .......++++ .+.++..|++|++||||.+|+||||+||||||||+|
T Consensus 160 ReYdl~~~~~~~~L~~~~~sgLGILR~~~~~~~~~~~~~l~~~~~~~~~~~~~~LivtKan~rS~VHR~aY~DYIgVK~f 239 (1526)
T pfam05088 160 REYDLEADGGGLVLRAVPGSGLGILRDVSVLRRGRDLAALPPEERAAALESPELLIVTKANSRSRVHRPAYLDYIGVKRF 239 (1526)
T ss_pred EEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf 89984157887316337999865177765223431000178267887506898459984388752235888878999866
Q ss_pred CCCCCEEEEEEEEEEECHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 69998877878852100476268855462089999999997488988878799999872289488605898999999999
Q gi|254780662|r 304 DERGNLIGELHVVGFFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCEQ 383 (1576)
Q Consensus 304 Da~G~viGE~RFlGLFTSsAY~~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPRDELFQ~s~eeL~~~a~g 383 (1576)
|++|+|+|||||+|||||+||++||++||+||+|+++|+++|||.|+||+||+|++|||+||||||||+++++|+++|++
T Consensus 240 D~~G~ViGE~RFlGLFTSsAY~~sv~~IPlLR~KV~~VL~~sGf~p~SHsgKaL~~ILEtyPRDELFQ~s~eeL~~ia~g 319 (1526)
T pfam05088 240 DADGEVIGEHRFLGLFTSAAYTQSPREIPLLRRKVERVLERSGFDPGSHSGKALLNILETYPRDELFQISEDELLEIAMG 319 (1526)
T ss_pred CCCCCEEEEEEEEEECCHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf 79898876789987454887548922281789999999996598988967699999998699999807999999999999
Q ss_pred HHHHCCCCCEEEEEEECCCCCEEEEEEEEECHHCCHHHHHHHHHHHHHHHCCE-EEEEEEECCCCEEEEEEEEECCCCCC
Q ss_conf 97310578517999746668989999982110289999999999999972984-78764322776389999997179877
Q gi|254780662|r 384 IIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGH-VAFYSSILEEGLVRIHFVIVRSGGEI 462 (1576)
Q Consensus 384 IL~L~eR~rvRLFlR~D~fgRFvS~LVyvPRDRYsT~vR~rIq~~L~~al~g~-v~f~t~~sEs~LARvHfiir~~~~~~ 462 (1576)
|++||||+++|||+|+|+||||+|||||||||||||++|.+||++|+++|+|+ ++||++|+||+|||+|||++++++..
T Consensus 320 IL~LqeR~rvRLFlR~D~fgRFvS~LVyvPRDrYsT~vR~rIq~iL~~~~~g~~~~f~~~~sEs~LARlhfii~~~~~~~ 399 (1526)
T pfam05088 320 ILSLQERPRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRLRIQDILAEALGGTSVEFTTQFSESPLARVHFIVRVDPGAE 399 (1526)
T ss_pred HHHHCCCCCEEEEEEECCCCCEEEEEEEECHHHCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEEEEECCCCCC
T ss_conf 98413378605998774778889999990435479999999999999996996456888606874599999998289888
Q ss_pred CCCCHHHHHHHHHHHHHCHHHHHHHHHHH-----------CCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 73798999999999985432779999750-----------1110048978865279889999999997323788615665
Q gi|254780662|r 463 SHPSQESLEEGVRSIVACWEDKFYKSAGD-----------GVPRFIFSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVC 531 (1576)
Q Consensus 463 ~~vD~~~LE~~i~~~~rsW~D~L~~al~~-----------~~~~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~~ 531 (1576)
+++|.++||++|++++|+|+|+|.+++.+ .+|+.+||++|||.|+|++|+.||++|+.|.+.++..+.+
T Consensus 400 ~~~d~~~le~~l~~~~r~W~d~l~~~L~~~~ge~~~~~l~~~y~~afp~~Y~e~~~~~~Av~Di~~le~l~~~~~~~~~l 479 (1526)
T pfam05088 400 PDVDVAELEARLAEAARSWEDRLQDALLEAFGEERGAALARRYADAFPASYREDFSPREAVADIERLEALSAEGPLAVRL 479 (1526)
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999999999973846999999987408766799999998759999972479899999999999625899804899
Q ss_pred ECCCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 03788--8707999974798766989888898569579721544667658887317999981430677666897888999
Q gi|254780662|r 532 FENKE--DGKVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDA 609 (1576)
Q Consensus 532 ~~~~~--~~~~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~ 609 (1576)
|++.+ ++.+|||||+.+.|++||++||+|||||++|++|+||+|++ ++..+|||||.|+.+.+...++.+.+++
T Consensus 480 y~~~~~~~~~~rlkly~~~~~~~LS~vlPvLenlG~~Vi~E~py~i~~----~~~~~wI~df~l~~~~~~~~~~~~~~~~ 555 (1526)
T pfam05088 480 YRPLEAEPGSLRLKLYHAGEPLPLSDVLPVLENLGLRVIDERPYEVRP----DGRRVWIHDFGLELPGGGPIDLDEVRER 555 (1526)
T ss_pred EECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECEEEEC----CCCEEEEEEEEEECCCCCCCCHHHHHHH
T ss_conf 723778887179999728998558888789985696697750558713----9946999999975488775588989999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999769875643569999639989999999999999988188889899999997147999999999987528887
Q gi|254780662|r 610 LVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSL 689 (1576)
Q Consensus 610 ~~~~~~~~~~~~~e~D~~n~Lv~~~~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~ 689 (1576)
|+++|.++|+|++|||+||+||+.+||+||||++||||++||+|+|++|||.||+++|.+||++++.|++||++||||..
T Consensus 556 f~~af~avw~g~~e~D~fn~Lvl~a~l~wr~v~~lRa~~~yl~Q~~~~~s~~~i~~~l~~~~~~~~~lv~lF~arfdP~~ 635 (1526)
T pfam05088 556 FEEAFAAVWNGRAENDGFNRLVLAAGLSWREVAVLRAYARYLRQTGFPFSQDYIEDTLSRHPDIARLLVALFEARFDPAL 635 (1526)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999749701371759998729988999999999999987489867999999999689999999999998569877
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC---CCCEEEEEECHHHCCCCCCCCCCEE
Q ss_conf 7520488999999999998630368327799999999999752228730589---8863688639577788888878569
Q gi|254780662|r 690 SDQERGENTKRILGEIDSALLKVPSLDDDTVLRSYVNLISGTLRTNYFQKNQ---DDIALVFKFDSRKINSVGTDELHRE 766 (1576)
Q Consensus 690 ~~~~r~~~~~~~~~~~~~~l~~V~~ld~drilr~~~~~i~atlRTN~y~~~~---~~~~lsfkld~~~i~~~p~p~P~~e 766 (1576)
. ..|.+..+.+.++|.++|++|+|+|+|||||+|+++|.||+||||||++. +|+||||||+|+.|+++|.|+|+||
T Consensus 636 ~-~~~~~~~~~~~~~i~~~l~~V~~ld~DrilR~~~~li~atlRTN~yq~~~~g~~~~~lsfK~~~~~i~~lP~P~P~~E 714 (1526)
T pfam05088 636 E-EDREAKAAALRAAIEEALDAVASLDEDRILRRYLNLIDATLRTNFYQRDADGQPKPYLSFKLDPAKIPDLPLPRPWFE 714 (1526)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCEE
T ss_conf 7-666899999999999998635882088999999999999860443444767898873899876554788999988569
Q ss_pred EEEECCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99983865799840542330404200885788888999899845328742888753278716899889989999999999
Q gi|254780662|r 767 IFVYGVEVEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREA 846 (1576)
Q Consensus 767 ifv~sp~~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~ 846 (1576)
||||||+|||||||||+|||||||||||+||||||||||||||||||+||||+|||||||||++|.++||++|++||++|
T Consensus 715 ifVysp~vEGvHLR~g~VARGGlRWSDR~eDfRTEvLGLvKaQ~vKNavIVP~GaKGGFv~k~~p~~~~r~~~~~eg~~~ 794 (1526)
T pfam05088 715 IFVYSPRVEGVHLRGGKVARGGLRWSDRREDFRTEVLGLVKAQMVKNAVIVPVGAKGGFVVKRLPDPGDREAWMAEGIAC 794 (1526)
T ss_pred EEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99855974268535675446767465774113899998999886446768257885405427899988989999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 99999898877625688840288310305389867998177888326899999998808998501105699998843101
Q gi|254780662|r 847 YKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMG 926 (1576)
Q Consensus 847 y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mG 926 (1576)
||+||+||||||||+++|+||||++|||||+||||||||||||||||||+||+||.+||||||||||||||+||||||||
T Consensus 795 Y~~fi~~LLdiTDN~~~g~vv~P~~vv~~D~dDpYLVVAADKGTAtFSD~AN~ia~~~gfWLgDAFASGGS~GYDHK~mG 874 (1526)
T pfam05088 795 YKTFIRGLLDITDNLVDGEVVPPADVVRHDGDDPYLVVAADKGTATFSDIANAIAAEYGFWLGDAFASGGSVGYDHKKMG 874 (1526)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHC
T ss_conf 99999997654524558824499555346899973899844876641136789999819753413323887777622332
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 14678999999999980899654864599605886332443111276620899973943686777881379899999996
Q gi|254780662|r 927 ITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576)
Q Consensus 927 ITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576)
||||||||||||||||||+|+|++||||||||||||||||||||||+||||||||||+||||||||||+.||+||+|||+
T Consensus 875 ITArGAWesvkrHFre~g~d~q~~~ftvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~Pd~~~sf~ER~RLF~ 954 (1526)
T pfam05088 875 ITARGAWESVKRHFREMGIDIQTEPFTVVGIGDMSGDVFGNGMLLSEHIRLVAAFDHRHIFIDPDPDPAKSFAERKRLFE 954 (1526)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 33015999999999982888677865899643666654365300364222466505654644879882454899999865
Q ss_pred CCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCC
Q ss_conf 68987003897871789708982144421798999870988554288899986303653044338742111268986200
Q gi|254780662|r 1007 SPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNAD 1086 (1576)
Q Consensus 1007 lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~ 1086 (1576)
||||||+|||++|||+|||||+|++|+|+||||||++||++++++||+|||++|||||||||||||||||||||+|||++
T Consensus 955 lprSsW~DYd~~liS~GGGVf~RsaKsI~ls~e~~~~lg~~~~~~~p~eli~aiL~a~vDLlwnGGIGTYvkas~E~~~~ 1034 (1526)
T pfam05088 955 LPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEVRAALGIEKDSLTPNELIRAILKAPVDLLWNGGIGTYVKASTETHAD 1034 (1526)
T ss_pred CCCCCHHHCCHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHEEEECCCCCEEECCCCCCHH
T ss_conf 89998155698761589844405557654899999984999565498999999971951406736741336247766221
Q ss_pred CCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 15210000002588304689985551030767899999739868353313443732440476799986588770798988
Q gi|254780662|r 1087 IGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLE 1166 (1576)
Q Consensus 1087 vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~ 1166 (1576)
|||||||++||||+|+||||||||||||+||+||||||++||+|||||||||||||||||||||||+|+.+|.+|+||.+
T Consensus 1035 vgDkaNd~~Rv~~~elr~kvvgEGgNLG~TQ~gRiE~a~~GgrintD~iDNsaGVd~SDhEVNiKIll~~~~~~g~lt~~ 1114 (1526)
T pfam05088 1035 VGDRANDALRVNGRELRAKVVGEGGNLGVTQLGRIEYALNGGRINTDAIDNSAGVDCSDHEVNIKILLNSLVRAGDLTRK 1114 (1526)
T ss_pred HCCCCCCCEEECHHHCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 06755642545157843579951443133108999999718802430012557866665411089989899875999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99889998789999999850078999999997500651799999999999848988243059998999999977899982
Q gi|254780662|r 1167 NRNKLLSSMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSR 1246 (1576)
Q Consensus 1167 ~Rn~lL~~mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~~E~LP~~~~l~~r~~~g~gltr 1246 (1576)
|||+||++|||||+++||+|||.||++||+++.++..+++.|+|||+.||+.|+|||++||||++++|.+|.++|+||||
T Consensus 1115 ~Rn~lL~~mTdeVa~lVL~dNy~Q~~alsl~~~~a~~~l~~~~r~i~~LE~~g~LdR~lE~LP~d~el~~R~~~g~gLTr 1194 (1526)
T pfam05088 1115 QRNALLASMTDEVAELVLRDNYLQTLALSLAEARAAARLEEHARLIDTLEKEGRLDRALEFLPSDEELAERAAAGQGLTR 1194 (1526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999899999999874379999999999752540899999999999708857675059598999999976999897
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89999999999999999845799984789999888399899988899977083179999999999988673523899988
Q gi|254780662|r 1247 PEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSCFVVSLA 1326 (1576)
Q Consensus 1247 pelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~~yfP~~l~~~f~~~i~~H~LrREIIaT~laN~iVNr~G~tF~~rl~ 1326 (1576)
|||||||||+||.||++|++|++||||||.+.|.+|||+.|+++|+++|.+||||||||||+++|+|||+|||||++||+
T Consensus 1195 PELAVLlAYaK~~l~~~Ll~sdlpddp~~~~~L~~YFP~~L~~rf~~~i~~HpLrREIIAT~laN~iVNr~G~tF~~rl~ 1274 (1526)
T pfam05088 1195 PELAVLLAYAKLVLKDELLASDLPDDPYLARLLLDYFPPPLRERFADAIESHPLRREIIATVLANDIVNRMGITFVFRLA 1274 (1526)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 89999999999999999856999998799999988698999998877875596299999999999999754768999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 87099999999999999998193789999986078589899999999999999999999985188778989999999999
Q gi|254780662|r 1327 KETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLIFINLTRLLIKNGKFIGDIGNAVKRLVTA 1406 (1576)
Q Consensus 1327 e~tGa~~~~i~rAy~~a~~if~l~~l~~~I~aLd~~v~a~~q~~l~~~~~~ll~r~trW~lr~~~~~~~i~~~i~~~~~~ 1406 (1576)
|+||+++++|+|||++++++|+++++|++|++|||++|+++|++|+.+++++++|+|+|||||++.+++|++.|++|+++
T Consensus 1275 e~tGas~~~varAy~va~~if~l~~lw~~I~aLD~~v~a~~q~~l~~~~~rll~ratrWlLr~~~~~~~i~~~i~~~~~~ 1354 (1526)
T pfam05088 1275 EETGASVADVARAYVAAREIFGLPALWDEIEALDNKVPAAVQLRLLLELRRLLRRATRWLLRNRRQPLDIAAEIERFRPG 1354 (1526)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98794999999999999998391999999986478899999999999999999999999986799889989999999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
Q ss_conf 99999872573598999999999999997699988999984322556640099999880999899999999999760868
Q gi|254780662|r 1407 FHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPPDLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVD 1486 (1576)
Q Consensus 1407 v~~l~~~l~~~l~~~~~~~~~~~~~~l~~~Gvp~~LA~~va~l~~l~~~ldIv~vA~~~~~~~~~va~~yf~l~~~l~l~ 1486 (1576)
+++|.++++++|++++++.++++.++|++.|||++||+++|.+++++++|||+++|..++.|+.+||++||+++++|+|+
T Consensus 1355 v~~L~~~l~~~L~~~~~~~~~~~~~~l~~~GvP~~LA~~vA~l~~l~~~ldIv~iA~~~~~~~~~va~~Yf~l~~~l~l~ 1434 (1526)
T pfam05088 1355 VAALRPQLPELLPGEEREALEERAQALVEAGVPEALARRVAALDYLFSALDIVELAEETGRDLEEVARVYFALGDRLGLD 1434 (1526)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
T ss_conf 99999866764387999999999999998799999999996405566550599999997929999999999998762928
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-------HHHHHHHHHHHCCCCCH
Q ss_conf 99999872887887899999999999999999999999612888885899999999-------99999999882789874
Q gi|254780662|r 1487 RLLSVAHNVVVDDHYENLALSAGLDWMYSARREMIVKAITTGSSVATIMQNEKWKE-------VKDQVFDILSVEKEVTV 1559 (1576)
Q Consensus 1487 ~l~~~i~~l~~~~~W~~lAr~al~ddl~~~~r~lt~~vl~~~~~~~~~~~~~~w~~-------~~~~~l~~l~~~~~~dl 1559 (1576)
||++++..+|++||||+|||++++|||+++|++||..||.. ...++.+.++.|++ |++++++|+++++.+|+
T Consensus 1435 ~l~~~i~~l~~~d~W~~lAr~alrddL~~~~r~Lt~~vL~~-~~~~~~~~i~~W~~~~~~~v~R~~~~l~el~~~~~~dl 1513 (1526)
T pfam05088 1435 WLREAISALPVDDRWQRLARAALRDDLYWQQRALTAAVLSG-PGEDAEAAVAAWLEANASRLERWRRMLAELKASGELDL 1513 (1526)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999970898986999999999999999999999999836-89998999999997498999999999999985799865
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4999999999998
Q gi|254780662|r 1560 AHITVATHLLSGF 1572 (1576)
Q Consensus 1560 a~lsVa~~~lr~l 1572 (1576)
||||||+|+|+.|
T Consensus 1514 A~lsVA~r~Lr~L 1526 (1526)
T pfam05088 1514 AKLSVALRELRDL 1526 (1526)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999998539
No 2
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=3775.87 Aligned_cols=1559 Identities=42% Similarity=0.694 Sum_probs=1503.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 975300458899999997303467-----268899988631997897449989999999999999840589887178724
Q gi|254780662|r 1 MVISRDLKRSKIIGDVDIAIAILG-----LPSFSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWDHSSACCIDIR 75 (1576)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-----~~~~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~v~~ 75 (1576)
|..+.+.+....++.+..+..... ..+.|++.+|+.+|.+|+..|++++|++++.++|.++++++.|+++|+++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~V~v~- 79 (1592)
T COG2902 1 MTIKPGPKLDVQIEKAFTAADLPKESKAYDVTRLPQKLFSRAPIDDLAEYRASLLAAAALEAFYFLGRRRAGAPCVRVY- 79 (1592)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEC-
T ss_conf 9987776422128899987420340245677765787764288044543689999999999999998533899638855-
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 76555899886579999478774389999999997799127998464899988997374236778876633699999579
Q gi|254780662|r 76 EVEGINPSGISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLK 155 (1576)
Q Consensus 76 p~~~~~gw~s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr 155 (1576)
|....+| +||+|+||+||||||||||+|+|++.|+.+|+++|||+.+.|+++|.+..+.+. .....||||||++++
T Consensus 80 ~~v~~~g---~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~~hpv~~~~r~~~g~l~~i~~~-~~~~~~s~~~i~i~~ 155 (1592)
T COG2902 80 PGVAEHG---PVTALQIVLDNMPFLVDSVMGELTRLGLQIHLLLHPVIDVRRSPKGELLKIGPK-GTKQRESLMHIHIDR 155 (1592)
T ss_pred CCCCCCC---CCEEEEEECCCCCEEHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCEEECCCC-CCCCCEEEEEEECCC
T ss_conf 7755679---821689972899731266889988616525888426378713888715522789-874440689996255
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEE
Q ss_conf 99-8999999999999999999999779999999999999854067--75311488999999997289188104799841
Q gi|254780662|r 156 IT-PEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFCHLT--GIKEYAVEALTFLNWLNEDNFQFMGMRYHPLV 232 (1576)
Q Consensus 156 ~~-~e~~~~L~~~L~~VL~dVr~aV~Dw~aM~~rl~~l~~~L~~~~--~~~ee~~Ea~aFL~WL~ddhFtFLGyReY~l~ 232 (1576)
.. .+....|...|..+|.+|+.+|.||++|+.++.++++++.... +.+.+..|+.+||+||.+|||+|||||+|.+.
T Consensus 156 ~~~~~~~~~l~~~i~~~l~~v~~~v~D~~~m~~~l~~~~~~l~~~~~~~~~~~~~E~~~fl~wL~~dnf~FlG~r~~~~s 235 (1592)
T COG2902 156 LGDAKSLRTLEEAIREVLSQVRRAVNDWPAMLAKLEELIDELDARGSRPDALDRQEVIAFLRWLGDDNFVFLGYREFVVS 235 (1592)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEEEEC
T ss_conf 55566676689999999998999972132577789999999985159973245789999874304687588501268861
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEE
Q ss_conf 3777513632288741100385311254--10189788876126981899844873310036776489998786999887
Q gi|254780662|r 233 AGQKQVKLDHDMPTELGILRDSSIVVLG--FDRVTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGIKHFDERGNLI 310 (1576)
Q Consensus 233 ~~~~~~~L~~~~~sgLGILR~~~~~~~~--~~~l~~~~r~~~~~~~~LivtKan~rS~VHR~aylDyIgVK~fDa~G~vi 310 (1576)
+ ..+....+++||+||++.....+ .+..++.+++++..+.+|++||+|.+|+|||++||||||||+||++|++|
T Consensus 236 ~----~~~~~~~~~gLg~lr~~~~~~~r~~~~~~~~~~~~~l~~~~~liltkan~~S~vHr~~y~dyIgVk~~d~~g~~I 311 (1592)
T COG2902 236 G----GILESLKESGLGVLRDEDVSVPRDDDAVETDRINALLDDDKLLILTKANVISRVHRIAYMDYIGVKEFDAKGEVI 311 (1592)
T ss_pred C----CEEECCCCCCCEEEECCCCCCCCCCHHHCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 7----635216676640531466676774201101167763358852788314444226766677654113105887511
Q ss_pred EEEEEEEEECHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 78788521004762688554620899999999974889888787999998722894886058989999999999731057
Q gi|254780662|r 311 GELHVVGFFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCEQIIDIMDR 390 (1576)
Q Consensus 311 GE~RFlGLFTSsAY~~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPRDELFQ~s~eeL~~~a~gIL~L~eR 390 (1576)
||+||+|||||++|++|+.+||++|.|++.|+.++||+|+||+||.|.++||+||||||||+++|.|+.+|++|+.+++|
T Consensus 312 ~e~r~~glfts~ay~~~v~~Ip~iR~kv~~vi~~~g~d~~~h~gk~l~~vle~~pr~eLfq~~~e~l~~~a~~v~~l~~r 391 (1592)
T COG2902 312 GEKRFVGLFTSAAYNHSVSEIPLIRSKVEEVIARAGLDPESHSGKLLRNVLETYPRDELFQISTELLLTMAYAVVKLGDR 391 (1592)
T ss_pred EEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 11543024456775178555704799999987551489443766999999873887764257757899999997042667
Q ss_pred CCEEEEEEECCCCCEEEEEEEEECHHCCHHHHHHHHHHHHHHHCCE-EEEEEEECCCCEEEEEEEEECCCCCCCCCCHHH
Q ss_conf 8517999746668989999982110289999999999999972984-787643227763899999971798777379899
Q gi|254780662|r 391 PRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGH-VAFYSSILEEGLVRIHFVIVRSGGEISHPSQES 469 (1576)
Q Consensus 391 ~rvRLFlR~D~fgRFvS~LVyvPRDRYsT~vR~rIq~~L~~al~g~-v~f~t~~sEs~LARvHfiir~~~~~~~~vD~~~ 469 (1576)
|++|+|+|.|+|+||+|||||+|||||+|++|.+|+++|++.|+|+ ++|++.|+|+++||+||||+.+++..+.+|.++
T Consensus 392 ~r~r~f~r~D~~~rfis~lvyvprery~s~vr~ki~~~L~~~~~g~~~~~~~~f~e~~~a~ihfiv~~~~~~t~~~d~~~ 471 (1592)
T COG2902 392 PRVRLFARADRFDRFISSLVYVPRERYTSEVREKIYQYLKNVFGGRLGEYIPEFSESPLARIHFIVRYQRGKTIKVDVSA 471 (1592)
T ss_pred CHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCHHH
T ss_conf 32442035554347124677434887646889999999999857802543664067872149999987788888768899
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHC-----------CCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 99999999854327799997501-----------1100489788652798899999999973237886156650378887
Q gi|254780662|r 470 LEEGVRSIVACWEDKFYKSAGDG-----------VPRFIFSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDG 538 (1576)
Q Consensus 470 LE~~i~~~~rsW~D~L~~al~~~-----------~~~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~~~~~~~~~ 538 (1576)
||+.+..++++|+|+|.+++... .|+.+||++||+.|+|.+|+.||.+|..|...++..+.+|...+++
T Consensus 472 le~~~~~~~~~w~d~~~e~~~~~~g~~~g~~~~~~~~~~fp~~Y~~~~~~~~Av~di~~l~al~~~~~~~~~~y~~~~p~ 551 (1592)
T COG2902 472 LEALLRYYARTWSDRYVEAFSAKDGESVGLALLKHYAAIFPEAYREEFTPAEAVVDIEVLAALSEGEREASLLYEADGPD 551 (1592)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99999999808289999998503773100356766633168767653283767650899984234663443113312897
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 07999974798766989888898569579721544667658887317999981430677666897888999999999997
Q gi|254780662|r 539 KVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFKYIF 618 (1576)
Q Consensus 539 ~~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1576)
..++|+|+.+.|++||+++|+|||||++|++|++|.+.. .++..+|||+|.+....+...++.....+|+|+|.++|
T Consensus 552 ~~~lkly~~~~~~~LS~~lp~lenlG~~vi~e~~~~l~~---~~g~~vwi~df~ls~~~~~~~d~t~~~~~~eEaf~~iw 628 (1592)
T COG2902 552 TLFLKLYHRGKPLALSDVLPILENLGFRVIEERTFRLGH---ADGRPVWIYDFELSSISGIPDDLTALEIRFEEAFLAIW 628 (1592)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCEECCC---CCCCEEEEECEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 503466657987643145558875374676202200346---67862443110421466765645566678999999997
Q ss_pred CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 69875643569999639989999999999999988188889899999997147999999999987528887752048899
Q gi|254780662|r 619 HERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENT 698 (1576)
Q Consensus 619 ~~~~e~D~~n~Lv~~~~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~~~~~r~~~~ 698 (1576)
.|.+|||+||+||+.+||+||||.+||||++|++|+|++|||+||+.+|.+||++++.|+.||.+||+|...+. ...+
T Consensus 629 ~G~lenD~fnrlvl~a~l~~r~v~llrayarYl~Q~G~~ysq~yI~~~ln~hp~~ar~L~~Lf~~rf~P~~~~~--~~~~ 706 (1592)
T COG2902 629 RGRLENDGFNRLVLLAGLTWRQVALLRAYARYLQQAGFPYSQSYIEATLNKHPDIARSLVDLFDARFDPSIKDS--NKAA 706 (1592)
T ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCH--HHHH
T ss_conf 25454341357999713551488999999999998178732778998860381789999999997448877831--5469
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC---CCCEEEEEECHHHCCCCCCCCCCEEEEEECCCEE
Q ss_conf 9999999998630368327799999999999752228730589---8863688639577788888878569999838657
Q gi|254780662|r 699 KRILGEIDSALLKVPSLDDDTVLRSYVNLISGTLRTNYFQKNQ---DDIALVFKFDSRKINSVGTDELHREIFVYGVEVE 775 (1576)
Q Consensus 699 ~~~~~~~~~~l~~V~~ld~drilr~~~~~i~atlRTN~y~~~~---~~~~lsfkld~~~i~~~p~p~P~~eifv~sp~~e 775 (1576)
+++..+|.++|+.|.++|+|||||+|.++|.|||||||||++. .|.+|||||||+.|+++|.|+||+|||||||+||
T Consensus 707 ~al~~~i~~al~~v~~ld~DrILR~~~~~i~atLRTNyfq~~~~~~~k~~lSFK~dps~i~~lp~P~Py~eIFVyg~~vE 786 (1592)
T COG2902 707 EALLDKIEEALDAVPSLDEDRILRRFVNLVKATLRTNYFQLDGHGTPKVALSFKFDPSLIDELPYPRPYREIFVYGPEVE 786 (1592)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCEEEEEEECHHHCCCCCCCCCCEEEEEECCCCE
T ss_conf 99999999887338873278999999999988773010100678885326999847665678889875248999737614
Q ss_pred EEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99840542330404200885788888999899845328742888753278716899889989999999999999998988
Q gi|254780662|r 776 GVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRALL 855 (1576)
Q Consensus 776 GvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~lL 855 (1576)
|||||||+|||||||||||.+|||||||||||||||||||||||||||||+||++|.+++||++++||++|||+||++||
T Consensus 787 GvHLRFg~VARGGLRwsDR~~D~rtEvlgLvKAQqvKNavIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~Ll 866 (1592)
T COG2902 787 GVHLRFGPVARGGLRWSDRNQDFRTEVLGLVKAQQVKNAVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLL 866 (1592)
T ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78741465335655132045567899987888887636723565775337405677777568888751899999999998
Q ss_pred HHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 77625688840288310305389867998177888326899999998808998501105699998843101146789999
Q gi|254780662|r 856 SITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWET 935 (1576)
Q Consensus 856 ditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~ 935 (1576)
|||||+++++++||++|||||+|||||||||||||||||||||.+|++||||||||||||||+|||||+|||||||||||
T Consensus 867 ditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAtFsD~AN~vA~~~~fwl~DAFaSGgS~GydHK~mGITarGawe~ 946 (1592)
T COG2902 867 DITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTATFSDIANSVAREYGFWLGDAFASGGSAGYDHKKMGITARGAWEA 946 (1592)
T ss_pred HHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88877504874797566413799975999438885207788878889858971666414787798860015202639999
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99999980899654864599605886332443111276620899973943686777881379899999996689870038
Q gi|254780662|r 936 VKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDF 1015 (1576)
Q Consensus 936 v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dy 1015 (1576)
|||||||||+|+|+++|||||||||||||||||||||+||+|+|||||+|||||||||++.||+||+|||+||||||+||
T Consensus 947 VkrhFrelg~D~Q~~~fTvvgiGdmsGDVfgNgMLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DY 1026 (1592)
T COG2902 947 VKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNGMLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDY 1026 (1592)
T ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHC
T ss_conf 99999983656778852798417988655676433046424678864776656899970024888888753875645455
Q ss_pred CHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCE
Q ss_conf 97871789708982144421798999870988554288899986303653044338742111268986200152100000
Q gi|254780662|r 1016 DRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNIL 1095 (1576)
Q Consensus 1016 d~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~ 1095 (1576)
|+++||+|||||+|++|+|+||||+++++|+..+.++|+|||+|||||||||||||||||||||++|||++|||||||++
T Consensus 1027 D~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw~GGIgTYVka~~etnA~vgDrANd~i 1106 (1592)
T COG2902 1027 DASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVGDRANDAI 1106 (1592)
T ss_pred CHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCEEEECCCCCCCHHHCCCCHHH
T ss_conf 45334799758973013467898999983777533584899999974844652037875167568875504330110220
Q ss_pred ECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 02588304689985551030767899999739868353313443732440476799986588770798988998899987
Q gi|254780662|r 1096 RVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSM 1175 (1576)
Q Consensus 1096 rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~~m 1175 (1576)
||||.++||||||||||||+||+|||||+++||+|||||||||||||||||||||||+|+++|++|+||.++||+||++|
T Consensus 1107 rv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EVniKIal~~av~~g~l~~~~Rn~Llasm 1186 (1592)
T COG2902 1107 RVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEVNIKIALNSAVFAGKLTRGERNALLASM 1186 (1592)
T ss_pred CCCCCEECEEEEEECCCCCCCCHHHHHHHHCCCEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 05665223069851543134622689998718742242320368976523246467755335432776634688999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 89999999850078999999997500651799999999999848988243059998999999977899982899999999
Q gi|254780662|r 1176 TSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAY 1255 (1576)
Q Consensus 1176 tdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~~E~LP~~~~l~~r~~~g~gltrpelavLlay 1255 (1576)
||||+++||+|||.|+++||+.++++...+.++.|+|.+||+.|.|||.+|+||+++++.+|..+|+|||||||+|||||
T Consensus 1187 tdeV~~lVl~nny~Q~~ais~~~~~~~~~~~~~s~~m~~le~~~~lDR~~E~lps~~el~~R~~~g~~ltrPEL~vllay 1266 (1592)
T COG2902 1187 TDEVASLVLRNNYLQTEAISLLERLNLSLITELSRFISTLEAKGLLDREVEFLPSDAELAERNAAGRGLTRPELAVLLAY 1266 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999861355577778887556655089999999999700225777618988899999863777884899999865
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH
Q ss_conf 99999999845799984789999888399899988899977083179999999999988673523899988870999999
Q gi|254780662|r 1256 AKLKLSEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSCFVVSLAKETGSSTED 1335 (1576)
Q Consensus 1256 ~K~~l~~~l~~s~l~dd~~~~~~l~~yfP~~l~~~f~~~i~~H~LrREIIaT~laN~iVNr~G~tF~~rl~e~tGa~~~~ 1335 (1576)
+|+.||+++++|++||||||...|.+|||+.|+++|+.+|..|||+||||+|+++|++||+|||||++||+|+||++++|
T Consensus 1267 ~Kl~l~~elv~s~iPdd~y~~~~L~~YFp~~l~~~~a~~i~~hrL~reIiat~~~n~~vn~~G~~fv~rl~e~tG~~~~d 1346 (1592)
T COG2902 1267 SKLALFEELVASEIPDDSYFDALLSRYFPSRLVKQYANEIRSHRLKREIIATVLANDLVNRGGITFVSRLKEATGASPAD 1346 (1592)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
T ss_conf 04421588874228982899999998755999998666622422899999999999999832907999999884999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998193789999986078589899999999999999999999985188778989999999999999998725
Q gi|254780662|r 1336 VIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLIFINLTRLLIKNGKFIGDIGNAVKRLVTAFHKLNSLLQ 1415 (1576)
Q Consensus 1336 i~rAy~~a~~if~l~~l~~~I~aLd~~v~a~~q~~l~~~~~~ll~r~trW~lr~~~~~~~i~~~i~~~~~~v~~l~~~l~ 1415 (1576)
|+|+|+++|++|+++.+|++|++|||++|+++|+.||.+++|++++++||+|||++++.++++.|++|++.+++|.+.+.
T Consensus 1347 vv~~y~~~~~~f~l~~i~~~I~ald~~v~~~vq~~l~~~v~rl~~~~~~w~l~~~~~~~~v~~~v~~~~~~~~aL~~~~~ 1426 (1592)
T COG2902 1347 VVRAYVAVREIFGLGDIWREIDALDNQVPGAVQNDLYLEVRRLIRRATRWLLRNRPQPLNVGAEVERFRAAVKALRPRMS 1426 (1592)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999886184789999874134587788999999999999999899985589986689999999999998767788
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 73598999999999999997699988999984322556640099999880999899999999999760868999998728
Q gi|254780662|r 1416 EKIPVEWLERFNNWVTNLTNKGFPPDLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNV 1495 (1576)
Q Consensus 1416 ~~l~~~~~~~~~~~~~~l~~~Gvp~~LA~~va~l~~l~~~ldIv~vA~~~~~~~~~va~~yf~l~~~l~l~~l~~~i~~l 1495 (1576)
++|+++.++.++++.+.|++.|+|+.||.++|.+.++++++||+++|..++.++.+||++||+++++|+++|++.++..+
T Consensus 1427 ~~L~~~~~~~~~~~~~~~~~~Gv~e~LA~~va~~~~l~~~~dii~ia~~~~~~~~~~Ak~yf~v~~~~~~~~l~~a~~~~ 1506 (1592)
T COG2902 1427 ELLVGEDKAAVEARAAGYVEKGVPESLAYRVATLSLLYSVLDIIDIADITGIDVAEVAKAYFAVSDALGLDWLLKAADSL 1506 (1592)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 75475669999999999997586399999997230677778899998752888899999998898772754899987457
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-------HHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 87887899999999999999999999999612888885899999999-------99999999882789874499999999
Q gi|254780662|r 1496 VVDDHYENLALSAGLDWMYSARREMIVKAITTGSSVATIMQNEKWKE-------VKDQVFDILSVEKEVTVAHITVATHL 1568 (1576)
Q Consensus 1496 ~~~~~W~~lAr~al~ddl~~~~r~lt~~vl~~~~~~~~~~~~~~w~~-------~~~~~l~~l~~~~~~dla~lsVa~~~ 1568 (1576)
|++|+||+|||.+++||++++||.||.+||.. .....+.+..|++ +.+.+|.++++++++|+|++|||+++
T Consensus 1507 ~~~d~w~~LA~~~~~ddi~~~~R~i~~~vL~~--~~~~~~~v~~W~~~~~~rv~~~~~~l~el~~~g~~~~a~lsvA~~~ 1584 (1592)
T COG2902 1507 PVDDRWQSLARLRLRDDIYAAQRSLTIAVLAP--GAKAEDPVAAWLERDGSRVERVRDMLKELKASGTIDLATLSVAARL 1584 (1592)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 86238999999997877899998799998087--5223134999987366179999999999986577207899999999
Q ss_pred HHHHHHH
Q ss_conf 9998761
Q gi|254780662|r 1569 LSGFLLK 1575 (1576)
Q Consensus 1569 lr~l~~~ 1575 (1576)
|+.|.++
T Consensus 1585 l~~l~~~ 1591 (1592)
T COG2902 1585 LRDLAQT 1591 (1592)
T ss_pred HHHHHHC
T ss_conf 9998624
No 3
>PTZ00324 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=830.39 Aligned_cols=648 Identities=21% Similarity=0.304 Sum_probs=518.1
Q ss_pred HHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 98988889856957972154466765888731799998143067766689788899999999999769875643569999
Q gi|254780662|r 553 LSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFKYIFHERVDNDSFNHLIM 632 (1576)
Q Consensus 553 Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~D~~n~Lv~ 632 (1576)
-+-+-.+-|.+-+.+- |.-|. |.. -|+-|+.++. +...|...++ ++.. -|..|.|+|--
T Consensus 310 ~~~itrlhe~~~~~~e-~tv~~-------daa--vifa~yft~~-pt~~d~~hl~-----~~~~-----kepng~~rln~ 368 (1020)
T PTZ00324 310 FNAITRLHEAGALSCE-ETVFI-------DAA--VIFAMYFTPS-PTTDDYRHLK-----AILA-----KEPNGVNRLNN 368 (1020)
T ss_pred HHHHHHHHHHHCCCCC-EEEEC-------CCH--HHEEEEECCC-CCCCHHHHHH-----HHHH-----CCCCCHHHHHH
T ss_conf 2788888773245500-04450-------112--0036771589-9971078999-----9970-----19870345666
Q ss_pred -HCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -6399899999999999999881888898999999971479999999999875288877520488999999999998630
Q gi|254780662|r 633 -LTDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLK 711 (1576)
Q Consensus 633 -~~~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~~~~~~r~~~~~~~~~~~~~~l~~ 711 (1576)
+..|+. |+ .|..||...+.-||+..+.+++.|..---| +.|.+ +.++|...+.+
T Consensus 369 lr~sl~~-e~----------------msery~~~~i~~ype~~~~iyedf~~gs~~----~~~~~----~~~~~~~~~~~ 423 (1020)
T PTZ00324 369 LRSSLTQ-EV----------------MSERYTGSVIALYPEFVKLIYEDFRLGSTP----ERRAA----IAEKITHRLRE 423 (1020)
T ss_pred HHHHHHH-HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCHHH----HHHHHHHHHHH
T ss_conf 7778789-99----------------876666527875389999999885048983----20157----99999988643
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHCCCCCCC-CCCEEEEEECCCEEEEEEECCCCCCCEE
Q ss_conf 3683277-9999999999975222873058988636886395777888888-7856999983865799840542330404
Q gi|254780662|r 712 VPSLDDD-TVLRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINSVGTD-ELHREIFVYGVEVEGVHLRCGKIARGGL 789 (1576)
Q Consensus 712 V~~ld~d-rilr~~~~~i~atlRTN~y~~~~~~~~lsfkld~~~i~~~p~p-~P~~eifv~sp~~eGvHlR~g~vARGGl 789 (1576)
-..-.+| .|+.+|+.|+.++||||||++ .|.+|||||||.++|...+| +||+.+||+|++|.|||+||++||||||
T Consensus 424 ~~~~e~~~~~f~aFl~FN~~iLKTNF~~~--tKvALSFRLdP~FLp~~EYP~~PyG~FfVvG~~FrGFHIRFrDIARGGI 501 (1020)
T PTZ00324 424 DDRPEYDRTLFMSFLKFNEVIIKHNFCKT--EKAALAFRLDPVFLKELEFPRVPHGVFLFAGGQWRGFHIRFTDIARGGV 501 (1020)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCC--CEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCE
T ss_conf 13407788999999998688873147555--4367998406453760228988727999973771564351000346725
Q ss_pred EE--ECCHHHHH-------HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 20--08857888-------8899989984532874288875327871689988998999999999999999898877625
Q gi|254780662|r 790 RW--SDRAADYR-------TEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRALLSITDN 860 (1576)
Q Consensus 790 Rw--SdR~edfr-------tEvlgL~kaQ~vKN~vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~lLditDN 860 (1576)
|. | |..||. .|+|+|+.|||.|||+||+|||||++++........ -+.....||..||+++|||.
T Consensus 502 RiV~S-rn~dY~~N~~~LFdENYnLA~TQqlKNKDIPEGGSKGVILLd~~~l~~~---~~~~~~~~F~kYIDAiLDLl-- 575 (1020)
T PTZ00324 502 RMIIC-KERDYRRNKRSVFQENYNLAHTQLLKNKDIPEGGSKGTILVSSRYLNKF---DEVRCQHIFLQYVDALLDVI-- 575 (1020)
T ss_pred EEEEE-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCH---HHHHHHHHHHHHHHHHHHHH--
T ss_conf 89972-7278777787788888777676651057888887545998453225510---14789999999999999875--
Q ss_pred CCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCCCCHHCCCCCC---CCCCCCCCCCHHHHHHHH
Q ss_conf 68884028831030538986799817788832-68999999988089985011056999---988431011467899999
Q gi|254780662|r 861 FEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTANILAQEAKFWLDDAFASGGSM---GYDHKKMGITARGAWETV 936 (1576)
Q Consensus 861 ~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfwlgdAFaSGgs~---GydHK~mGITarGaw~~v 936 (1576)
+.+ .+.+|+|.+.|++|++|||+|||. |+|||..+|++|||+||.+|.||||. |++||.||||+.|+.+||
T Consensus 576 -ip~----~~~iVD~y~k~EiIFLGPDEnTad~midwaa~hAK~RGyp~WksF~TGKs~~lGGIPHDeYGMTSlsVr~YV 650 (1020)
T PTZ00324 576 -IPG----EKGVVDGLKSEEIIFLGPDENTAGTFPAAGALYSKGRGYSAWKSFTTGKDPSLGGIPHDTYGMTTHSVRAYV 650 (1020)
T ss_pred -CCC----CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf -289----867223689953066579988633589999999986699755440127886569988744376618599999
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999808996548645996058863324431112766208999739436867778813798999999966898700389
Q gi|254780662|r 937 KRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFD 1016 (1576)
Q Consensus 937 ~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd 1016 (1576)
+..+++||+| ...+|.+.+|||+|||+||.||+|+ .|.+++.|++++.+||+ |++..|+.||+. .|...+.||
T Consensus 651 ~~i~~kLgid--e~~vtKfqTGGPDGDLGSNeIlls~-ek~vaIvDGSGVL~DP~---GLDr~EL~RLA~-~R~~i~~FD 723 (1020)
T PTZ00324 651 TSIYEKLGLN--ESEMRKFQTGGPDGDLGSNELLRSK-EKMVGMVDISASLHDPK---GINREELARLAH-HRLPLREFD 723 (1020)
T ss_pred HHHHHHHCCC--HHHEEEECCCCCCCCCCHHHHHHCC-CCEEEEEECCEEEECCC---CCCHHHHHHHHH-HCCCHHHCC
T ss_conf 9999993998--1451563147988653223420136-87689980646645888---899899999998-147630099
Q ss_pred HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEE
Q ss_conf 78717897089821444217989998709885542888999863036530443387421112689862001521000000
Q gi|254780662|r 1017 RKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILR 1096 (1576)
Q Consensus 1017 ~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~r 1096 (1576)
++++|++|+.+..+++++.|+... -++.++...|+++- +-..++||| |||+|+|++.+-+++|++++
T Consensus 724 ~sKLS~~Gf~V~vdd~~v~LP~G~----vV~nG~~fRNtFHl-l~~~~aDLF--------VPCGGRPeSIn~~Nv~~f~~ 790 (1020)
T PTZ00324 724 RSKLSPEGFLVLTEDRNVKLPDGT----LVEDGSRLRDEFHF-LKYSDADVF--------VPCGGRPRSVTLENVGRFLK 790 (1020)
T ss_pred HHHCCCCCEEEEECCCEEECCCCE----EECCCCEEHHCCCC-CCCCCCCEE--------ECCCCCCCCCCHHHHHHHHH
T ss_conf 868698865999646432178972----82576050200356-667777777--------23899846477667999873
Q ss_pred ---CCC-------------CCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ---258-------------8304689985551030767899999739868353313443732440476799986588770
Q gi|254780662|r 1097 ---VTA-------------DKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRD 1160 (1576)
Q Consensus 1097 ---v~g-------------~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~ 1160 (1576)
.|| +.+++|+|+||||||+||.||+.++.+|+.|++||++|||||+|||+||...++|++....
T Consensus 791 ~~~~dG~s~~~~k~~~l~~~~p~~kyIVEGANLFITq~AR~~LEk~GVIlfKDASANKGGVtSSSlEVLA~L~L~Deef~ 870 (1020)
T PTZ00324 791 IPNADGESMMEGKYANLSPEQLKFKIIVEGANLFISQDARLALEKCGVTLIKDASANKGGVTSSSLEVFAGLCLSDEEHA 870 (1020)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHCCCHHHHHHHHHCCEEEEEECCCCCCCEECCHHHHHHHHHCCHHHHH
T ss_conf 00125643355422234557765017985303115879999999778389830565678714327999977406848788
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHH
Q ss_conf 798988998---89998789999999850078999999997500651799999999999848988243059998999999
Q gi|254780662|r 1161 GRLTLENRN---KLLSSMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEER 1237 (1576)
Q Consensus 1161 g~lt~~~Rn---~lL~~mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~~E~LP~~~~l~~r 1237 (1576)
..|+.++-+ ++...+..||.+.+-+| .++|| +..+|
T Consensus 871 ~~Mcv~d~~~~PeFY~~YVkeVq~~I~~N------------------------------------A~~EF-----eaIWr 909 (1020)
T PTZ00324 871 KYMSAKSATDAPEFYKKYVKEILDRIEEN------------------------------------AKLEF-----NAIWR 909 (1020)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHH------------------------------------HHHHH-----HHHHH
T ss_conf 50236899998679999999999999998------------------------------------99999-----99999
Q ss_pred H-HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHCCHHHHHHHHH-H-HHCCCCH--HHHHHHHHHH
Q ss_conf 9-778999828999999999999999984579998478999-9888399899988899-9-7708317--9999999999
Q gi|254780662|r 1238 I-REEVSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFS-ILLSYFPRQLSELYSE-D-IMNHQLR--RAIVATVLAN 1311 (1576)
Q Consensus 1238 ~-~~g~gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~-~l~~yfP~~l~~~f~~-~-i~~H~Lr--REIIaT~laN 1311 (1576)
. ....|..+++|+..||.+.+.|+++|..|++++|..+.+ +|.+++|+.|.++-+- . +.+-|.. |.|.|+.||+
T Consensus 910 E~~~~tg~p~s~lSd~LS~~In~L~~el~~S~l~~n~~l~r~VL~~~iP~lLl~~vgle~ileRVPe~YlrAifaS~LAS 989 (1020)
T PTZ00324 910 EWEKDPQQPKTLIADALSRKNVQIRASILSSDIFQNRDLVRYVMDQYAPKTLKEVVPVDLMLKRVPENYQHAICAMWLAS 989 (1020)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 74206899750878999999988899986242334388999999986629998864898998858599999999998876
Q ss_pred HHHHCCCHH
Q ss_conf 988673523
Q gi|254780662|r 1312 EIINKGGSC 1320 (1576)
Q Consensus 1312 ~iVNr~G~t 1320 (1576)
..|...|+.
T Consensus 990 ~FVY~~G~~ 998 (1020)
T PTZ00324 990 RYVYQTGVD 998 (1020)
T ss_pred HHHHHCCCC
T ss_conf 512331899
No 4
>KOG2250 consensus
Probab=99.97 E-value=1e-28 Score=271.93 Aligned_cols=354 Identities=24% Similarity=0.249 Sum_probs=274.8
Q ss_pred CCEEEEEECHHH-CCCCCCC-CCCEEEEEECCCEEEEEEECCCCCCCEEEEE-CCHHHHHHHHHHHHHHHHHCCC--CCC
Q ss_conf 863688639577-7888888-7856999983865799840542330404200-8857888889998998453287--428
Q gi|254780662|r 743 DIALVFKFDSRK-INSVGTD-ELHREIFVYGVEVEGVHLRCGKIARGGLRWS-DRAADYRTEVLGLVRAQKVKNA--VIV 817 (1576)
Q Consensus 743 ~~~lsfkld~~~-i~~~p~p-~P~~eifv~sp~~eGvHlR~g~vARGGlRwS-dR~edfrtEvlgL~kaQ~vKN~--vIv 817 (1576)
+.+|+|+|+|.. +-..-.| .++..+|+....|.+.|.|++..+|||||++ +...| |+.-|..-|..||| +||
T Consensus 64 ~~~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d---~~k~La~~~t~K~A~tdiP 140 (514)
T KOG2250 64 YTAILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLD---IVKALAFLMTYKNALTDIP 140 (514)
T ss_pred HHHHHHHCCCCCEEEEEEECEECCCCEEEEECCHHHHHHHCCCCCCCCEEECCCCCHH---HHHHHHHHHHHHHHCCCCC
T ss_conf 7655664186412589980324688538984001121343057666854767768988---9988889999876435888
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88753278716899889989999999999999998988776256888402883103053898679981778883268999
Q gi|254780662|r 818 PVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTA 897 (1576)
Q Consensus 818 p~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~fsD~A 897 (1576)
.||||||+.+.. ..-.- .|-....+.|++.|.|+.+-.+| ||.++ .. ++++++|+-|-+|+
T Consensus 141 ~GGaKGGi~~dP--k~~s~----nEi~r~~~~f~~el~~~iGp~~D---vPapd---------ig-~G~rEm~~if~~Ya 201 (514)
T KOG2250 141 YGGAKGGILIDP--KGKSD----NEIERITRRFTDELIDIIGPDTD---VPAPD---------IG-TGPREMGWIFDEYA 201 (514)
T ss_pred CCCCCCCEECCC--CCCCH----HHHHHHHHHHHHHHHHHCCCCCC---CCCCC---------CC-CCCCHHHHHHHHHH
T ss_conf 778766300186--64654----79999999999999997199998---89531---------46-68512345588899
Q ss_pred HHHHHHCCCCCCCHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCC-C
Q ss_conf 99998808998501105699---9988431011467899999999998089965486459960588633244311127-6
Q gi|254780662|r 898 NILAQEAKFWLDDAFASGGS---MGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLS-R 973 (1576)
Q Consensus 898 n~ia~~~gfwlgdAFaSGgs---~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls-~ 973 (1576)
--+.. |.||-+||+ .|+ |-.++.|.||+|-+++-...++++..-- .-+.+.|+|+.++--.|..++| .
T Consensus 202 ~~~g~------~~a~vTGK~i~~GGs-~~R~~ATG~GV~~y~e~~~~~~~~~~~~-kgkr~~i~G~Gnv~~~aa~~l~~~ 273 (514)
T KOG2250 202 KTHGH------WKAVVTGKPISLGGS-HGRYEATGRGVVYYVEAILNDANGKKGI-KGKRVVIQGFGNVGGHAAKKLSEK 273 (514)
T ss_pred HHHCC------CCEEEECCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 86265------513650798765775-6764450210899999999861577776-742899857871588999999866
Q ss_pred CCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 62089997394368677788137989999999668987003897871789708982144421798999870988554288
Q gi|254780662|r 974 KIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATP 1053 (1576)
Q Consensus 974 ~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p 1053 (1576)
..|.||..|..+..+||+ |.+..|+.++-+ .+++..+||....|..|.+. +. |
T Consensus 274 G~kvvavsD~~G~l~np~---Gid~~eL~~~~~-~k~~i~~f~~~~~~~~~~~~-----------------~~------~ 326 (514)
T KOG2250 274 GAKVVAVSDSKGVLINPD---GIDIEELLDLAD-EKKTIKSFDGAKLSYEGYIA-----------------GL------P 326 (514)
T ss_pred CCEEEEEECCCEEEECCC---CCCHHHHHHHHH-HHCCCCCCCCCCCCCCCCCC-----------------CC------C
T ss_conf 997999976730698999---989899999998-64250256420125664312-----------------57------5
Q ss_pred HHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECC
Q ss_conf 89998630365304433874211126898620015210000002588304689985551030767899999739868353
Q gi|254780662|r 1054 SEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSD 1133 (1576)
Q Consensus 1054 ~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intD 1133 (1576)
. .+|...+|.| |||.++ +...+++|.+.+.- .||+|+||+|++.||.|---|..+|+.|..|
T Consensus 327 ~----~~~v~~~DI~--------vPCA~q-n~I~~~nA~~lvak-----~~~~IvEGAN~ptTpeA~~vlek~gvli~Pd 388 (514)
T KOG2250 327 P----WTLVEKCDIL--------VPCATQ-NEITGENAKALVAK-----GCKYIVEGANMPTTPEADEVLEKAGVLIIPD 388 (514)
T ss_pred C----HHHHHHCCEE--------EECCCC-CCCCHHHHHHHHHC-----CCCEEEECCCCCCCHHHHHHHHHCCEEEECH
T ss_conf 0----6657517677--------433766-72057659999864-----7868985378998865899999679389242
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHH
Q ss_conf 313443732440476799986588770798----98899889998
Q gi|254780662|r 1134 AIDNSGGVNCSDLEVNIKIALASAMRDGRL----TLENRNKLLSS 1174 (1576)
Q Consensus 1134 aidNsaGV~~Sd~EVniKIll~~~~~~g~l----t~~~Rn~lL~~ 1174 (1576)
..+|+|||..|..||.-.+-+++ .|.+ +.+.-+++|++
T Consensus 389 ~~aNaGGVtvS~~E~l~nl~~~s---~g~~~~~~~~e~v~~~L~~ 430 (514)
T KOG2250 389 IYANAGGVTVSYFEWLQNLNHVS---YGKLTFKWTEEKVDSLLAS 430 (514)
T ss_pred HHCCCCCEEEEHHHHHHHCCCCC---CCCEEEEEEHHHHHHHHHH
T ss_conf 32267875532799998535453---4423578606547999999
No 5
>PRK09414 glutamate dehydrogenase; Provisional
Probab=99.74 E-value=2.6e-14 Score=144.26 Aligned_cols=316 Identities=21% Similarity=0.235 Sum_probs=211.6
Q ss_pred EEEEEEECCC---CCCCEEEEECC-HHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 5799840542---33040420088-578888899989984532874--28887532787168998899899999999999
Q gi|254780662|r 774 VEGVHLRCGK---IARGGLRWSDR-AADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAY 847 (1576)
Q Consensus 774 ~eGvHlR~g~---vARGGlRwSdR-~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y 847 (1576)
+.|+.+.|-. -..||||++-. ..| |+.-|+.-|..||++ +|=||+|||.-+. |..-+.. |..+--
T Consensus 74 ~~GyRvq~n~a~GPyKGGlRfhp~V~~~---evk~La~~mt~KnAl~~lP~GGgKGGi~~D--Pk~~S~~----El~R~~ 144 (446)
T PRK09414 74 NRGYRVQFNSAIGPYKGGLRFHPSVNLS---ILKFLGFEQIFKNALTGLPMGGGKGGSDFD--PKGKSDA----EIMRFC 144 (446)
T ss_pred EEEEEEEECCCCCCCCCCEEECCCCCHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCHH----HHHHHH
T ss_conf 7457777437668877852217988999---999999999999886077767766651328--8779999----999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCC----CCHHCCCCCCCCC
Q ss_conf 999989887762568884028831030538986799817788832--6899999998808998----5011056999988
Q gi|254780662|r 848 KTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT--FSDTANILAQEAKFWL----DDAFASGGSMGYD 921 (1576)
Q Consensus 848 ~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~--fsD~An~ia~~~gfwl----gdAFaSGgs~Gyd 921 (1576)
+.|++.|-... + |. -| |-|||=||.. +.=+.-..++-.|.+- |....-|||.|.
T Consensus 145 r~f~~eL~~~I----G-----p~------~D----VPApDigt~~rem~wm~d~Y~~i~~~~~gv~TGKp~~~GGs~gR- 204 (446)
T PRK09414 145 QSFMTELYRHI----G-----PD------TD----VPAGDIGVGGREIGYMFGQYKRLTNRFEGVLTGKGLSFGGSLIR- 204 (446)
T ss_pred HHHHHHHHHHH----C-----CC------CC----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC-
T ss_conf 99999999860----9-----76------69----87865787788999999999985498773568997210688687-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCH--HHCCCCCEEEEEECCCEEEECCCCCCCCCHH
Q ss_conf 43101146789999999999808996548645996058863324431--1127662089997394368677788137989
Q gi|254780662|r 922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG--MLLSRKIQLVAAFDHSDIFIDPDPNSETTFD 999 (1576)
Q Consensus 922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNg--mLls~~i~lvaafdh~hif~DP~PD~~~s~~ 999 (1576)
-.-|.+|+..+++.-++.+|.+++...+.+-| +|-|.... .|...-.|+||..|+.+..+||+ |.+..
T Consensus 205 ---~eATG~Gv~y~~~e~l~~~g~~l~gk~v~IqG----fGNVg~~aA~~l~e~GakvVavSDs~G~Iy~~~---Gid~~ 274 (446)
T PRK09414 205 ---PEATGYGLVYFAEEMLKARGDSFEGKTVVVSG----SGNVAIYAIEKAMELGAKVVTCSDSSGYVYDED---GITPE 274 (446)
T ss_pred ---CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHH
T ss_conf ---65322899999999999749995788799977----777999999999976997999983786078899---98999
Q ss_pred HHHHHHH---CCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCE
Q ss_conf 9999996---6898700389787178970898214442179899987098855428889998630365304433874211
Q gi|254780662|r 1000 ERKRLFD---SPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTY 1076 (1576)
Q Consensus 1000 Er~RLf~---lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTY 1076 (1576)
++..+.+ ..+.+..+|-... +|. ..++++ .++..|+|++
T Consensus 275 ~L~~~~~~k~~~~~~l~~y~~~~--~~a------------------------~~~~~~----~~~~~~cDIl-------- 316 (446)
T PRK09414 275 KLALLKEIKEVRRGRISEYAEEF--PGA------------------------EYLEGQ----KPWSVPCDIA-------- 316 (446)
T ss_pred HHHHHHHHHHCCCCCCCCHHHCC--CCC------------------------EECCCC----CCCCCCCCEE--------
T ss_conf 99999998733798432122138--997------------------------653887----6002355489--------
Q ss_pred ECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12689862001521000000258830468998555103076789999973986835331344373244047679998658
Q gi|254780662|r 1077 IRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALAS 1156 (1576)
Q Consensus 1077 vka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~ 1156 (1576)
+||..|.... .++|. .++-|| ||+|+||||.-+|+.|.--|..+|+.+..|..+|+|||.+|-+| ..+
T Consensus 317 iPaA~qn~I~-~~nA~-~l~a~g----ck~V~EGAN~P~T~eA~~il~~~gi~v~Pd~lANAGGV~vSy~E------w~Q 384 (446)
T PRK09414 317 LPCATQNELD-GEDAK-TLIANG----VKAVAEGANMPSTPEAIDVFLEAGVLFAPGKAANAGGVATSGLE------MSQ 384 (446)
T ss_pred EECCCCCCCC-HHHHH-HHHHCC----CEEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCEEEEEEH------HHH
T ss_conf 5322257889-99999-999769----76999658999898999999988988958266127784875113------010
Q ss_pred HHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 8770798988998899987899
Q gi|254780662|r 1157 AMRDGRLTLENRNKLLSSMTSE 1178 (1576)
Q Consensus 1157 ~~~~g~lt~~~Rn~lL~~mtde 1178 (1576)
-...-.-|.++=++-|..+-..
T Consensus 385 N~~~~~Wt~eeV~~kL~~iM~~ 406 (446)
T PRK09414 385 NASRLSWTFEEVDARLHDIMKN 406 (446)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 1234778899999999999999
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=99.70 E-value=1.5e-13 Score=137.54 Aligned_cols=314 Identities=20% Similarity=0.244 Sum_probs=211.5
Q ss_pred EEEEEEECCC---CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5799840542---33040420088578888899989984532874--288875327871689988998999999999999
Q gi|254780662|r 774 VEGVHLRCGK---IARGGLRWSDRAADYRTEVLGLVRAQKVKNAV--IVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYK 848 (1576)
Q Consensus 774 ~eGvHlR~g~---vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~v--Ivp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~ 848 (1576)
+.|+-+.|.. -..||||+.-.-. ..|+..|..-|..||++ +|=||+|||..+. |..-+.. |..+--+
T Consensus 97 ~~GyRVQ~n~alGPyKGGlRfhp~V~--l~~vk~Laf~mt~KnAL~~lP~GG~KGG~~~d--Pk~~S~~----EieR~~r 168 (469)
T PTZ00079 97 NRGFRVQYNSALGPYKGGLRFHPSVN--LSIVKFLGFEQIFKNSLTTLPMGGGKGGSDFD--PKGKSDN----EILKFCQ 168 (469)
T ss_pred EEEEEEEECCCCCCCCCCEECCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCCCCCEECC--CCCCCHH----HHHHHHH
T ss_conf 62457775387788878742289889--99999999999998873178866777731328--9899989----9999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCCCCHHCCCCCC--CCCCCC
Q ss_conf 99989887762568884028831030538986799817788832--68999999988089985011056999--988431
Q gi|254780662|r 849 TYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT--FSDTANILAQEAKFWLDDAFASGGSM--GYDHKK 924 (1576)
Q Consensus 849 ~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~--fsD~An~ia~~~gfwlgdAFaSGgs~--GydHK~ 924 (1576)
.|++.|-...- |. - =|-|||=||.. +.=+.-..++-+|.|- +..+||+. |=-.-.
T Consensus 169 ~fm~eL~~~IG---------p~------~----DVPApDiGtg~remgwm~d~Y~~i~~~~~--gvvTGKp~~~GGs~gR 227 (469)
T PTZ00079 169 SFMTELYRHIG---------PC------T----DVPAGDIGVGGREIGYLYGQYKRLRNEFN--GVLTGKNVKWGGSNIR 227 (469)
T ss_pred HHHHHHHHHCC---------CC------C----CCCCCCCCCCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCCCCCCC
T ss_conf 99999998539---------98------6----56787677689999999999985058675--1771887100686786
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHHHH
Q ss_conf 011467899999999998089965486459960588633244311--127662089997394368677788137989999
Q gi|254780662|r 925 MGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDERK 1002 (1576)
Q Consensus 925 mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er~ 1002 (1576)
-.-|.+|+.-+++.-++.+|.+++...+.|-| +|.|..... |...-.|+||..|+.+..+||+ |.+.+...
T Consensus 228 ~eATG~G~vy~~~e~l~~~~~~l~gk~vaIqG----fGNVg~~aA~kl~e~GakVVavSDs~G~Iy~~~---Gid~e~l~ 300 (469)
T PTZ00079 228 PEATGYGAVYFVEEVLKSLNIVVEKKTAVVSG----SGNVAQYCVEKLLQLGAKVLTLSDSNGYIVEPN---GFTEEKLA 300 (469)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHHHHH
T ss_conf 76242889999999998679985788899976----673899999999976998999983894398889---88999999
Q ss_pred HHHH---CCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECC
Q ss_conf 9996---6898700389787178970898214442179899987098855428889998630365304433874211126
Q gi|254780662|r 1003 RLFD---SPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079 (1576)
Q Consensus 1003 RLf~---lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka 1079 (1576)
-+.+ ..+.+..+|-... ++ ..| +++.+ ++..|+|++ +||
T Consensus 301 ~~~~~k~~~~g~l~~y~~~~--~~-a~~-----------------------~~~~~----~w~~~cDIl--------iPc 342 (469)
T PTZ00079 301 HLMELKNEKRGRIKEYLKHS--ST-AKY-----------------------FENEK----PWEVPCDLA--------FPC 342 (469)
T ss_pred HHHHHHHHCCCCHHHHHHCC--CC-CEE-----------------------CCCCC----CCCCCCCEE--------EEC
T ss_conf 99999851166344565338--87-045-----------------------58986----224667699--------655
Q ss_pred CCCCCCCCCCCCCCCEECCCCCE---EEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89862001521000000258830---468998555103076789999973986835331344373244047679998658
Q gi|254780662|r 1080 PRENNADIGDKGNNILRVTADKV---RAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALAS 1156 (1576)
Q Consensus 1080 ~~e~~~~vgd~and~~rv~g~~l---r~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~ 1156 (1576)
..|..... ++ +..+ .||+|+||||--+|+.|---|..+|+.+-.|-.+|+|||.+|-+|- .+
T Consensus 343 A~qneI~~-~n--------A~~l~~~g~k~V~EGAN~P~T~eA~~il~~~gI~v~Pd~~ANAGGVavSylEw------~Q 407 (469)
T PTZ00079 343 ATQNEINL-DD--------AKLLVKNGCKLVGEGANMPSTVEAINLFKSKGVIYCPSKAANAGGVAVSGLEM------SQ 407 (469)
T ss_pred CCCCCCCH-HH--------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCEEECCHHHCCCCEEEEEEEE------EE
T ss_conf 55578788-99--------99998488669996789998989999999889889580775576716760402------00
Q ss_pred HHHCCCCCHHHHHHHHHHHH
Q ss_conf 87707989889988999878
Q gi|254780662|r 1157 AMRDGRLTLENRNKLLSSMT 1176 (1576)
Q Consensus 1157 ~~~~g~lt~~~Rn~lL~~mt 1176 (1576)
-...-.-|.++=|+-|.+.-
T Consensus 408 N~~~~~Wt~eeVd~kL~~iM 427 (469)
T PTZ00079 408 NSQRLQWTAEEVDEKLKEIM 427 (469)
T ss_pred CCCCCCCCHHHHHHHHHHHH
T ss_conf 44447889999999999999
No 7
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=99.67 E-value=2.6e-13 Score=135.35 Aligned_cols=316 Identities=22% Similarity=0.222 Sum_probs=207.7
Q ss_pred CEEEEEEECCC---CCCCEEEEEC-CHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 65799840542---3304042008-857888889998998453287--42888753278716899889989999999999
Q gi|254780662|r 773 EVEGVHLRCGK---IARGGLRWSD-RAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREA 846 (1576)
Q Consensus 773 ~~eGvHlR~g~---vARGGlRwSd-R~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~ 846 (1576)
.+.|+-..+-. =+-||+|+.- =.++ |+.-|...|..||+ .+|=||.|||+.+. |..-+.. |--+-
T Consensus 50 ~~~g~rvqhn~a~GP~kGGvRfhP~v~~~---ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~D--Pk~~S~~----E~erl 120 (411)
T COG0334 50 VFRGYRVQHNSALGPYKGGVRFHPYVTLE---EVKALSFWMTLKNALAGLPYGGGKGGIIVD--PKGLSDG----ELERL 120 (411)
T ss_pred EEEEEEEEECCCCCCCCCCEECCCCCCHH---HHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCHH----HHHHH
T ss_conf 55699999458768755735328878899---999999999999998189988875226678--6548878----99999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH--HHHHHHHHHHHCCC-CCCCHHCCCCC--CCCC
Q ss_conf 9999989887762568884028831030538986799817788832--68999999988089-98501105699--9988
Q gi|254780662|r 847 YKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT--FSDTANILAQEAKF-WLDDAFASGGS--MGYD 921 (1576)
Q Consensus 847 y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~--fsD~An~ia~~~gf-wlgdAFaSGgs--~Gyd 921 (1576)
.+.|++.+=++. -| |- -+-|+|=||-. +.=+.-+.+.-.|+ +. ++-+||+ .|=.
T Consensus 121 ~ra~~~~i~~~i---------G~---------~~-dIpApDvgt~~~~m~wm~dey~~i~g~~~~--gv~TGKp~~~GGS 179 (411)
T COG0334 121 SRAFGRAIYRLI---------GP---------DT-DIPAPDVGTNPQDMAWMMDEYSKIVGNSAP--GVFTGKPLELGGS 179 (411)
T ss_pred HHHHHHHHHHHC---------CC---------CC-EECCCCCCCCHHHHHHHHHHHHHHCCCCCC--CEECCCCCCCCCC
T ss_conf 999999999845---------98---------76-744633687899999999743200277876--4322776314677
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHH--CCCCCEEEEEECCCEEEECCCCCCCCCHH
Q ss_conf 4310114678999999999980899654864599605886332443111--27662089997394368677788137989
Q gi|254780662|r 922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGML--LSRKIQLVAAFDHSDIFIDPDPNSETTFD 999 (1576)
Q Consensus 922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmL--ls~~i~lvaafdh~hif~DP~PD~~~s~~ 999 (1576)
+-.-=.|++|+..+++.-+..+|.|+.- -||.--| +|-|..+... ...-.|+|++-|+.+..+||+ +++..
T Consensus 180 ~~r~~aTg~Gv~~~~~~a~~~~g~~l~G--~rVaVQG--~GNVg~~aa~~l~~~GAkvv~~sds~g~i~~~~---Gld~~ 252 (411)
T COG0334 180 LGRSEATGYGVFYAIREALKALGDDLEG--ARVAVQG--FGNVGQYAAEKLHELGAKVVAVSDSKGGIYDED---GLDVE 252 (411)
T ss_pred CCCCCCCCEEEHHHHHHHHHHCCCCCCC--CEEEEEC--CCHHHHHHHHHHHHCCCEEEEEECCCCCEECCC---CCCHH
T ss_conf 9998651033079999999981777688--7899977--628999999999974997999976788441677---77889
Q ss_pred HHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECC
Q ss_conf 99999966898700389787178970898214442179899987098855428889998630365304433874211126
Q gi|254780662|r 1000 ERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRA 1079 (1576)
Q Consensus 1000 Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka 1079 (1576)
+...+-+ .+.+..+|-. ...++++ .+|..++|.|-+|.
T Consensus 253 ~l~~~~~-~~~~v~~~~g------------------------------a~~i~~~----e~~~~~cDIl~PcA------- 290 (411)
T COG0334 253 ALLELKE-RRGSVAEYAG------------------------------AEYITNE----ELLEVDCDILIPCA------- 290 (411)
T ss_pred HHHHHHH-HHHHHHHHCC------------------------------CEECCCC----CCCCCCCCEECCCC-------
T ss_conf 9987766-4445876348------------------------------6672651----30045775771044-------
Q ss_pred CCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89862001521000000258830468998555103076789999973986835331344373244047679998658877
Q gi|254780662|r 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMR 1159 (1576)
Q Consensus 1080 ~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~ 1159 (1576)
.|..... -|+.+|+||+|+||||--.|..|---+..+|+....|...|+|||++|-.|. .+-..
T Consensus 291 -~~n~I~~---------~na~~l~ak~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~------~qn~~ 354 (411)
T COG0334 291 -LENVITE---------DNADQLKAKIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEW------VQNAQ 354 (411)
T ss_pred -CCCCCCH---------HHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCEECCHHHCCCCCEEEEHHHH------HHHCC
T ss_conf -4362563---------2188750027985267999877899999789888271322176703366988------75203
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 079898899889998789999999
Q gi|254780662|r 1160 DGRLTLENRNKLLSSMTSEVVELV 1183 (1576)
Q Consensus 1160 ~g~lt~~~Rn~lL~~mtdeV~~lV 1183 (1576)
..--|.++=++-|..+-..-.+.+
T Consensus 355 ~~~wt~eev~~kl~~im~~~~~~~ 378 (411)
T COG0334 355 GLYWTEEEVDEKLERIMVNAFEAV 378 (411)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 476589999999999999999999
No 8
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=99.57 E-value=7.2e-13 Score=131.39 Aligned_cols=202 Identities=23% Similarity=0.263 Sum_probs=147.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHC--CCCCEEEEEECCCEEEECCCC
Q ss_conf 699998843101146789999999999808996548645996058863324431112--766208999739436867778
Q gi|254780662|r 915 GGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLL--SRKIQLVAAFDHSDIFIDPDP 992 (1576)
Q Consensus 915 Ggs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLl--s~~i~lvaafdh~hif~DP~P 992 (1576)
|||.|- ..-|++|++.+++.-++++|.|. -+.-||+--| .|.|.++...+ -.-.|+|+..|+.+..+||+
T Consensus 1 GGs~gR----~eATg~Gv~~~~~~~~~~~~~~~-l~g~~v~IqG--fGnVG~~~a~~l~~~GakvvavsD~~G~i~~~~- 72 (237)
T pfam00208 1 GGSLGR----PEATGYGVVYFVEEALKKLGGDS-LEGKTVAVQG--FGNVGSYAAEKLLELGAKVVAVSDSSGYIYDPN- 72 (237)
T ss_pred CCCCCC----CCHHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEC--CCHHHHHHHHHHHHCCCEEEEEECCCCEEECCC-
T ss_conf 999999----83418999999999999749998-7899999989--889999999999987996999982876799999-
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCC
Q ss_conf 81379899999996689870038978717897089821444217989998709885542888999863036530443387
Q gi|254780662|r 993 NSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGG 1072 (1576)
Q Consensus 993 D~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gG 1072 (1576)
+++..+..++.+..++...+|+.+ ....+++++ +|..|+|+|
T Consensus 73 --Gldi~~l~~~~~~~~~~~~~~~~~----------------------------~~~~i~~~~----~~~~~~DIl---- 114 (237)
T pfam00208 73 --GIDIEELLELKEEGGGRVVEYAGS----------------------------GAEYISGEE----LWEIDCDIL---- 114 (237)
T ss_pred --CCCHHHHHHHHHHHCCEEECCCCC----------------------------CCEECCCCC----CCCCCCCEE----
T ss_conf --999999999999719843124665----------------------------753448710----004766688----
Q ss_pred CCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42111268986200152100000025883046899855510307678999997398683533134437324404767999
Q gi|254780662|r 1073 IGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKI 1152 (1576)
Q Consensus 1073 iGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKI 1152 (1576)
+||..+ +....+++ ..++||+|+||||..+|+.|.-.+..+|+.+.+|.+.|+|||.+|-+|-
T Consensus 115 ----iPaA~~-~~I~~~na--------~~i~ak~I~EgAN~p~t~eA~~~L~~rgI~viPD~laNAGGV~vSy~Ew---- 177 (237)
T pfam00208 115 ----VPCATQ-NEINEENA--------KLIKAKAVVEGANMPTTPEADEILEERGILYAPDKAANAGGVTVSYLEM---- 177 (237)
T ss_pred ----EECCCC-CCCCHHHH--------HHCCCCEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCEEEEHHHH----
T ss_conf ----644556-88998999--------8627548975378988978999999889989680775287635448887----
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 86588770798988998899987899999
Q gi|254780662|r 1153 ALASAMRDGRLTLENRNKLLSSMTSEVVE 1181 (1576)
Q Consensus 1153 ll~~~~~~g~lt~~~Rn~lL~~mtdeV~~ 1181 (1576)
.+-...-..+.++-++-|..+-...-+
T Consensus 178 --~qn~~~~~w~~eev~~~L~~~m~~~~~ 204 (237)
T pfam00208 178 --VQNSSRLSWTEEEVDEKLEEIMTNIFE 204 (237)
T ss_pred --HCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf --544655588999999999999999999
No 9
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=99.48 E-value=5.1e-12 Score=123.83 Aligned_cols=194 Identities=26% Similarity=0.335 Sum_probs=141.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCC
Q ss_conf 6999988431011467899999999998089965486459960588633244311--12766208999739436867778
Q gi|254780662|r 915 GGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDP 992 (1576)
Q Consensus 915 Ggs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~P 992 (1576)
|||.|.. .-|++|++.+++.-++.+|.+++...|.+-| .|.|..+.. |.....|+|+..|+.+-.++|+
T Consensus 1 GGs~gR~----eATG~Gv~~~~~~~l~~~~~~l~g~~v~IqG----~GnVG~~~a~~L~~~Gakvv~vsD~~G~i~~~~- 71 (227)
T cd01076 1 GGSLGRE----EATGRGVAYATREALKKLGIGLAGARVAIQG----FGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPD- 71 (227)
T ss_pred CCCCCCC----CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCEEEEEECCCCEEECCC-
T ss_conf 9999997----3328899999999999769897899999989----889999999999987995999984787388888-
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCC
Q ss_conf 81379899999996689870038978717897089821444217989998709885542888999863036530443387
Q gi|254780662|r 993 NSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGG 1072 (1576)
Q Consensus 993 D~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gG 1072 (1576)
+.+..++.+..+..+ +..+|.. + ..+++++ ++..|+|+|
T Consensus 72 --Gld~~~l~~~~~~~~-~~~~~~~------~------------------------~~~~~~~----~~~~~~DI~---- 110 (227)
T cd01076 72 --GLDVPALLAYKKEHG-SVLGFPG------A------------------------ERITNEE----LLELDCDIL---- 110 (227)
T ss_pred --CCCHHHHHHHHHHCC-CCCCCCC------C------------------------CCCCCCC----HHCCCCCEE----
T ss_conf --899999999999659-8026788------7------------------------5389623----104788789----
Q ss_pred CCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42111268986200152100000025883046899855510307678999997398683533134437324404767999
Q gi|254780662|r 1073 IGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKI 1152 (1576)
Q Consensus 1073 iGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKI 1152 (1576)
+||..+.-. ..+ |...++||+|+||||..+|+.|.--+..+|+.+.+|.+.|+|||.||-+|-
T Consensus 111 ----iP~A~~~~I-~~~--------~a~~l~ak~I~EgAN~p~t~~A~~~L~~rgI~viPD~laNaGGVivSy~Ew---- 173 (227)
T cd01076 111 ----IPAALENQI-TAD--------NADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDILANAGGVTVSYFEW---- 173 (227)
T ss_pred ----EECCCCCCC-CHH--------HHHHCCCEEEEECCCCCCCHHHHHHHHHCCCEEECCHHHCCCCEEEEHHHH----
T ss_conf ----877766977-999--------985447619984578998988999999886989680774487744559998----
Q ss_pred HHHHHHHCCCCCHHHHHHHHHH-HHH
Q ss_conf 8658877079898899889998-789
Q gi|254780662|r 1153 ALASAMRDGRLTLENRNKLLSS-MTS 1177 (1576)
Q Consensus 1153 ll~~~~~~g~lt~~~Rn~lL~~-mtd 1177 (1576)
.+-...-..+.++-++-|.+ |+.
T Consensus 174 --~qn~~~~~w~~~~V~~~l~~~m~~ 197 (227)
T cd01076 174 --VQNLQGFYWDEEEVNSRLETKMRE 197 (227)
T ss_pred --HCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf --632556798999999999999999
No 10
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=99.37 E-value=2.6e-10 Score=108.67 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=141.0
Q ss_pred CCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCH--HHCCCCCEEEEEECCCEE
Q ss_conf 501105699998843101146789999999999808996548645996058863324431--112766208999739436
Q gi|254780662|r 909 DDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG--MLLSRKIQLVAAFDHSDI 986 (1576)
Q Consensus 909 gdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNg--mLls~~i~lvaafdh~hi 986 (1576)
|.--..|||.|..- -|.+|+..+++.-++.+|.+++.-.|.+-|-|- |.... .|...-.|+||..|+.+.
T Consensus 2 GKp~~~GGs~gR~e----ATG~Gv~~~~~~~~~~~~~~l~g~~vaIQGfGn----VG~~aA~~l~e~GakvVaVsD~~G~ 73 (254)
T cd05313 2 GKGLSWGGSLIRPE----ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN----VAQYAAEKLLELGAKVVTLSDSKGY 73 (254)
T ss_pred CCCCCCCCCCCCCC----EEHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf 99833377868775----010889999999999679695899999989779----9999999999779979999857850
Q ss_pred EECCCCCCCCCHHHHHHHHHCC---CCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCC
Q ss_conf 8677788137989999999668---9870038978717897089821444217989998709885542888999863036
Q gi|254780662|r 987 FIDPDPNSETTFDERKRLFDSP---SSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMA 1063 (1576)
Q Consensus 987 f~DP~PD~~~s~~Er~RLf~lp---rssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a 1063 (1576)
.++|+ +++..+...|.+.. +++..+|-... . ....+++++ +|..
T Consensus 74 i~~~~---Gld~~~l~~l~~~k~~~~~~~~~~~~~~---~-----------------------~~~~~~~~~----~~~~ 120 (254)
T cd05313 74 VYDPD---GFTGEKLAELKEIKEVRRGRVSEYAKKY---G-----------------------TAKYFEGKK----PWEV 120 (254)
T ss_pred EECCC---CCCHHHHHHHHHHHHHCCCCCHHHHHCC---C-----------------------CCEECCCCC----HHHC
T ss_conf 88799---9988999999999974687102444138---9-----------------------856638975----1330
Q ss_pred CCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCC
Q ss_conf 53044338742111268986200152100000025883046899855510307678999997398683533134437324
Q gi|254780662|r 1064 SVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNC 1143 (1576)
Q Consensus 1064 ~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~ 1143 (1576)
|+|.| |||..|. ....+++.. +.+. .||+|+||||--+|+.|.-.+..+|+.+.+|.+.|+|||.+
T Consensus 121 ~cDIl--------iPaA~en-~I~~~nA~~---i~a~--~ck~IvEgANgP~T~eAd~iL~~kGI~viPDilaNAGGV~v 186 (254)
T cd05313 121 PCDIA--------FPCATQN-EVDAEDAKL---LVKN--GCKYVAEGANMPCTAEAIEVFRQAGVLFAPGKAANAGGVAV 186 (254)
T ss_pred CCCEE--------EECCCCC-CCCHHHHHH---HHHC--CCEEEEECCCCCCCHHHHHHHHHCCCEEECHHHHCCCCCEE
T ss_conf 47699--------7435466-789999999---9967--98299865889998789999998898896805620757011
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHH
Q ss_conf 404767999865887707989889988999-878999
Q gi|254780662|r 1144 SDLEVNIKIALASAMRDGRLTLENRNKLLS-SMTSEV 1179 (1576)
Q Consensus 1144 Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~-~mtdeV 1179 (1576)
|-+|- -+-...-.-+.++=++-|. .|++..
T Consensus 187 SyfEw------vQn~~~~~W~~eev~~~L~~~M~~a~ 217 (254)
T cd05313 187 SGLEM------SQNSQRLSWTAEEVDAKLKDIMKNIH 217 (254)
T ss_pred EHHHH------HHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 27487------75146458999999999999999999
No 11
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=99.25 E-value=3.7e-10 Score=107.36 Aligned_cols=185 Identities=24% Similarity=0.220 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 467899999999998089965486459960588633244311--127662089997394368677788137989999999
Q gi|254780662|r 928 TARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLF 1005 (1576)
Q Consensus 928 TarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf 1005 (1576)
|.+|++.+++.-++.+|.++..-.+.|-|.| -|.++.. |...-.|+|+..|+.+-++||+ +...+..+...
T Consensus 2 TG~Gv~~~~~~a~~~~~~~l~g~~vaVqGfG----nVG~~~a~~l~~~GakvvavsD~~G~i~~~~---g~~~~~~~~~~ 74 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLG----NVGWGLAKKLAEEGGKVLAVSDPDGYIYDPG---ITTEELINYAV 74 (217)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEECCC----HHHHHHHHHHHHCCCEEEEEECCCCEEECCC---CCCHHHHHHHH
T ss_conf 5137999999999976968579999998988----9999999999985998999985787177899---98699999999
Q ss_pred HCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCC
Q ss_conf 66898700389787178970898214442179899987098855428889998630365304433874211126898620
Q gi|254780662|r 1006 DSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNA 1085 (1576)
Q Consensus 1006 ~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~ 1085 (1576)
+.. ++-. |. ....+++++ +|..|+|+| +||..|.-.
T Consensus 75 ~~~-~~~~-~~------------------------------~~~~~~~~~----~~~~~~DIl--------iPaAl~~~I 110 (217)
T cd05211 75 ALG-GSAR-VK------------------------------VQDYFPGEA----ILGLDVDIF--------APCALGNVI 110 (217)
T ss_pred HHC-CCCC-CC------------------------------CCCCCCCCC----CCCCCCCEE--------EECCCCCCC
T ss_conf 818-9653-66------------------------------653059865----003677689--------642445887
Q ss_pred CCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 01521000000258830468998555103076789999973986835331344373244047679998658877079898
Q gi|254780662|r 1086 DIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTL 1165 (1576)
Q Consensus 1086 ~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~ 1165 (1576)
. . -|...++||+|+||||--+|+.|--.+..+|+.+.+|...|+|||.+|-+|- -+-...-.-+.
T Consensus 111 ~-~--------~~a~~i~ak~I~EgAN~P~t~ea~~iL~~rgI~viPD~laNaGGVivSy~Ew------~Qn~~~~~W~~ 175 (217)
T cd05211 111 D-L--------ENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIVSYFEW------VQNLQRLSWDA 175 (217)
T ss_pred C-H--------HHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCEEECHHHHCCCCEEEEHHHH------HHHCCCCCCCH
T ss_conf 9-8--------9998717728950678998978999999789989476884686722229999------74046689999
Q ss_pred HHHHHHHHH-HHHH
Q ss_conf 899889998-7899
Q gi|254780662|r 1166 ENRNKLLSS-MTSE 1178 (1576)
Q Consensus 1166 ~~Rn~lL~~-mtde 1178 (1576)
++.++-|.. |++-
T Consensus 176 eeV~~kL~~~m~~~ 189 (217)
T cd05211 176 EEVRSKLEQVMTDI 189 (217)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 12
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.50 E-value=9.4e-07 Score=77.13 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHHC-C-CCCCCCCEEEEEECCCCCCCCCCHH--HCCCCCEEEEEECCCEEEECCCCCCCCCHHHH
Q ss_conf 114678999999999980-8-9965486459960588633244311--12766208999739436867778813798999
Q gi|254780662|r 926 GITARGAWETVKRHFREM-D-IDIQSTPFTVAGVGDMSGDVFGNGM--LLSRKIQLVAAFDHSDIFIDPDPNSETTFDER 1001 (1576)
Q Consensus 926 GITarGaw~~v~rhfrel-g-~D~q~~~fTvvgiGdmsGDVfGNgm--Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er 1001 (1576)
..|++|+..+++.-.+.+ | .|.+...+-+-|.|- |.+.-. |...-.|++.+ |.+|+..
T Consensus 3 ~~Ta~GV~~~~~~~~~~~~g~~~l~gk~VaIqG~Gn----VG~~~A~~l~~~Gakvvv~--------d~~~~~~------ 64 (200)
T cd01075 3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK----VGYKLAEHLLEEGAKLIVA--------DINEEAV------ 64 (200)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEE--------ECCHHHH------
T ss_conf 813899999999999983099987899999989879----9999999999679979998--------2688999------
Q ss_pred HHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCC
Q ss_conf 99996689870038978717897089821444217989998709885542888999863036530443387421112689
Q gi|254780662|r 1002 KRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPR 1081 (1576)
Q Consensus 1002 ~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~ 1081 (1576)
.++-+.+ ....+++++ +|..++|+|.+|- .
T Consensus 65 ~~~~~~~--------------------------------------~~~~~~~~~----~~~~~~DIl~PcA--------~ 94 (200)
T cd01075 65 ARAAELF--------------------------------------GATVVAPEE----IYSVDADVFAPCA--------L 94 (200)
T ss_pred HHHHHCC--------------------------------------CCEEECCHH----HHCCCCCEEEECC--------C
T ss_conf 9998568--------------------------------------988937332----3227776886514--------1
Q ss_pred CCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHH-HHHHHCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 862001521000000258830468998555103076789-9999739868353313443732440476
Q gi|254780662|r 1082 ENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQAR-VVYSLNGGRINSDAIDNSGGVNCSDLEV 1148 (1576)
Q Consensus 1082 e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~R-ie~a~~Gg~intDaidNsaGV~~Sd~EV 1148 (1576)
+.-.. . -|...++||+|+||||--+|+.+- -.+..+|+.+.+|++.|+|||.+|.+|.
T Consensus 95 ~~~i~-~--------~~a~~i~ak~I~e~AN~p~t~~~~~~~L~~rgI~~iPD~laNaGGVi~s~~E~ 153 (200)
T cd01075 95 GGVIN-D--------DTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLINVADEL 153 (200)
T ss_pred CCCCC-H--------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCEEEECHHHEECCCHHHHHHHH
T ss_conf 15468-9--------99987089699735679999978999998599299682442073544223677
No 13
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=98.35 E-value=1.2e-06 Score=76.26 Aligned_cols=75 Identities=35% Similarity=0.391 Sum_probs=56.6
Q ss_pred CCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHH
Q ss_conf 588304689985551030767899999739868353313443732440476799986588770798988998-8999878
Q gi|254780662|r 1098 TADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRN-KLLSSMT 1176 (1576)
Q Consensus 1098 ~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~Rn-~lL~~mt 1176 (1576)
|...++||+|+||||..+|+.++-.+..+|+.+.+|++.|+|||.||.+|..-.+- ++.++-+ ++-..|.
T Consensus 19 ~a~~l~~k~I~egAN~p~t~ea~~~l~~~gi~~~PD~~~NaGgvi~s~~E~~qn~~---------~~~eev~~~l~~~m~ 89 (102)
T smart00839 19 NANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLA---------RTAEEVFTDLSEIMR 89 (102)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHCCCEECCHHHHCCCCEEEEHHHHHHCCC---------CCHHHHHHHHHHHHH
T ss_conf 99786983998558888887899999978996657044158875532999874625---------899999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780662|r 1177 SEVVE 1181 (1576)
Q Consensus 1177 deV~~ 1181 (1576)
+...+
T Consensus 90 ~~~~~ 94 (102)
T smart00839 90 NALEE 94 (102)
T ss_pred HHHHH
T ss_conf 99999
No 14
>pfam02812 ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerization domain.
Probab=96.98 E-value=0.013 Score=40.47 Aligned_cols=96 Identities=28% Similarity=0.216 Sum_probs=58.4
Q ss_pred EEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998405423304042008857888889998998453287--428887532787168998899899999999999999989
Q gi|254780662|r 776 GVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNA--VIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRA 853 (1576)
Q Consensus 776 GvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~--vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~ 853 (1576)
.+|=--.-=+.||+|++..... .|++.|+..+..||+ .++-+|+|||+.+. |..-+.. |-.+-.+.|.+.
T Consensus 26 v~Hn~~~GP~kGG~R~~~~~~~--~ev~~LA~~MT~K~Al~~lp~GGgKggI~~d--p~~~s~~----e~e~l~r~f~~~ 97 (131)
T pfam02812 26 VQHNTALGPAKGGLRFHPYVTL--EEVLRLARGMTYKNALAGLPFGGGKGGIIGD--PKGLSDA----ELERLTRAFGRE 97 (131)
T ss_pred EEECCCCCCCCCCEEECCCCCH--HHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCCCCHH----HHHHHHHHHHHH
T ss_conf 9976876766686475166999--9999999999999987179987710667538--5539979----999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH-HHHHHH
Q ss_conf 887762568884028831030538986799817788832-689999
Q gi|254780662|r 854 LLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT-FSDTAN 898 (1576)
Q Consensus 854 lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~-fsD~An 898 (1576)
|=++ +-.+ .-+-|+|=||-. -++|..
T Consensus 98 l~~~---ig~~----------------~dipapDvgt~~~~M~~i~ 124 (131)
T pfam02812 98 LESI---IGPG----------------RDIPAPDVGTGPRDMAWIA 124 (131)
T ss_pred HHHH---CCCC----------------CEECCCCCCCCHHHHHHHH
T ss_conf 9974---3998----------------5388888998999999999
No 15
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.83 E-value=0.06 Score=34.51 Aligned_cols=120 Identities=11% Similarity=0.077 Sum_probs=83.4
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEE
Q ss_conf 4897886527988999999999732378-861566503788870799997479876698988889856957972154466
Q gi|254780662|r 497 IFSQTFRDVFSPEKAVEDLPYIISCAEG-KEKLRVCFENKEDGKVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEI 575 (1576)
Q Consensus 497 aFp~~Yre~f~p~~Av~Di~~le~l~~~-~~~~~~~~~~~~~~~~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i 575 (1576)
.+|+.|=-.++|.+-+.+++.+..+... .+..+.....++.+...+.+|..+.|-.++++.-+|...|+.|++-+-|+.
T Consensus 692 ~~~~~Y~l~~~~~~i~~h~~~i~~~~~~~~~~~v~~~~~~~~~~tev~V~~~DrpgLFa~iagala~~glnI~dA~I~T~ 771 (934)
T PRK05092 692 RHYPAYWLKVDLDTQARHARFLRDADQAGRALATEVRPDPARGVTELTVLAADHPGLFSRIAGACAAAGANIVDARIFTT 771 (934)
T ss_pred HCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 67907650399899999999999733157882799887487884899999617888599999999978995478898984
Q ss_pred EECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 765888731799998143067766689788899999999999769875
Q gi|254780662|r 576 KMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFKYIFHERVD 623 (1576)
Q Consensus 576 ~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 623 (1576)
. ++ ..+-.|.+..+.+...+......+++..+..+..|...
T Consensus 772 ~-----dG--~alD~F~V~d~~g~~~~~~~r~~~l~~~i~~~L~g~~~ 812 (934)
T PRK05092 772 T-----DG--RALDTFWIQDAFGRDEDEPRRLARLGKAIEDALSGEVR 812 (934)
T ss_pred C-----CC--EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 8-----98--09999999668889888899999999999999758876
No 16
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.81 E-value=0.19 Score=30.11 Aligned_cols=95 Identities=6% Similarity=-0.103 Sum_probs=60.7
Q ss_pred HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCH----HHH
Q ss_conf 8899988631997897449989999999999999840589887178724765558998865799994787743----899
Q gi|254780662|r 27 SFSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWDHSSACCIDIREVEGINPSGISISIITVIVDNIPF----LYQ 102 (1576)
Q Consensus 27 ~~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~v~~p~~~~~gw~s~~tvi~iv~dD~Pf----LvD 102 (1576)
+.+.++|....+.++|...-...+-.+...+|+......++-+.|.|=---+++-...|...++-+..+..+- .+.
T Consensus 32 ~~l~~~f~~g~~i~~l~~~r~~~~D~ll~~lW~~~~~~~~~iaLvAVGGYGR~EL~P~SDIDlliL~~~~~~~~~~~~i~ 111 (869)
T PRK04374 32 MRLCKRFDQGEPIERLLALRARAVDQLMRNAWTRCIPADSGLSLHAVGGYGRGELFPRSDVDLLVLGDTAAQQRHEQALA 111 (869)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 99999986799999999999999999999999970788898589974886513578877044888538999857899999
Q ss_pred HHHHHHHHCCCCEEEEECC
Q ss_conf 9999999779912799846
Q gi|254780662|r 103 SIIGEIVARCRNLTMAVHP 121 (1576)
Q Consensus 103 Sv~~~l~~~~~~i~~~~HP 121 (1576)
.+...|=..|+.+-.-++.
T Consensus 112 ~f~~~LWD~gl~vGhSVRT 130 (869)
T PRK04374 112 RLFALLWDVGLPISHAVRS 130 (869)
T ss_pred HHHHHHHHCCCCCCCCCCC
T ss_conf 9999998189987867899
No 17
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.32 E-value=0.44 Score=26.79 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=12.5
Q ss_pred EEEECCCCCCCCCCCCC
Q ss_conf 36322887411003853
Q gi|254780662|r 239 KLDHDMPTELGILRDSS 255 (1576)
Q Consensus 239 ~L~~~~~sgLGILR~~~ 255 (1576)
.|.|+-+.|-|=|||-.
T Consensus 199 ~LEPniKe~~GGLRDiq 215 (869)
T PRK04374 199 NLEPDIKDGPGGLRDLQ 215 (869)
T ss_pred CCCCCCCCCCCCCCHHH
T ss_conf 36886568998731679
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.29 E-value=0.64 Score=25.36 Aligned_cols=67 Identities=9% Similarity=-0.115 Sum_probs=31.3
Q ss_pred HHHHHHHHHC-CCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCC-----HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999840-58988717872476555899886579999478774-----38999999999779912799846
Q gi|254780662|r 54 SVVSYDIFAG-WDHSSACCIDIREVEGINPSGISISIITVIVDNIP-----FLYQSIIGEIVARCRNLTMAVHP 121 (1576)
Q Consensus 54 ~~~~~~~~~~-r~~~~~~~~v~~p~~~~~gw~s~~tvi~iv~dD~P-----fLvDSv~~~l~~~~~~i~~~~HP 121 (1576)
....|+-+.- -..|=+.|.|=---+.+-...|...++ |+.++.+ -+.+.+.-.|=..|+.+-.-++.
T Consensus 44 l~~~~~~~~~~~~~g~ALvAvGGYGR~EL~P~SDIDLl-iL~~~~~~~~~~~~~~~~~~~LWD~Gl~vGhsVRT 116 (781)
T PRK03381 44 LTDKADEIGIADGSGFALVAVGGLGRRELLPYSDLDLV-LLHDGKPADDVAAVADRLWYPLWDAGIRLDHSVRT 116 (781)
T ss_pred HHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEE-EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999974999889869998488520246886706588-74599998689999999999988379987867899
No 19
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=92.13 E-value=0.87 Score=24.17 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHCCCCC-EEEEEEECC--CCCEEEEEEEEE
Q ss_conf 99999872289488605898999999999973105785-179997466--689899999821
Q gi|254780662|r 355 RMLQNTLEFYPRDELFQIDSTLLASFCEQIIDIMDRPR-VRVLPRIDR--FNHFFSSLIYIP 413 (1576)
Q Consensus 355 K~L~~ILEtyPRDELFQ~s~eeL~~~a~gIL~L~eR~r-vRLFlR~D~--fgRFvS~LVyvP 413 (1576)
.+.....+.++-|-+.....+++..-+..+++-...+. +-+.-++.+ |..-+-++||.|
T Consensus 651 ~~~~~l~~~~~~dYf~~~~~~~~a~h~~~~~~~~~~~~~l~~~~~~~~re~~~~te~~I~~~ 712 (903)
T TIGR01693 651 NEIEVLWLRAYDDYFLRFTHKEIAWHAELLLRAESSGGPLALIDRTRPREFSGGTEVFIYAP 712 (903)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEC
T ss_conf 35899999718898765562456654476304101588512214777732126357888508
No 20
>PRK05007 PII uridylyl-transferase; Provisional
Probab=91.96 E-value=0.91 Score=24.01 Aligned_cols=90 Identities=9% Similarity=-0.092 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHH--
Q ss_conf 889998863199789744998999999999999984058-98871787247655589988657999947877438999--
Q gi|254780662|r 27 SFSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWD-HSSACCIDIREVEGINPSGISISIITVIVDNIPFLYQS-- 103 (1576)
Q Consensus 27 ~~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~-~~~~~~~v~~p~~~~~gw~s~~tvi~iv~dD~PfLvDS-- 103 (1576)
+.+.+.|....+..+|..--....-.....+|+.+.--. ++-+.|.|=---+++-.+.|...++-+..+..+--...
T Consensus 36 ~~l~~~f~~~~~~~~l~~~r~~~~D~ll~~lw~~~~~~~~~~iaLvAVGGYGRgEL~P~SDIDlLiL~~~~~~~~~~~~i 115 (881)
T PRK05007 36 QWLGDAFDAGISAEQLVEARTEFIDQLLQRLWIEAGFDQIADIALVAVGGYGRGELHPLSDIDLLILSRKKLPDEQAQKV 115 (881)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 99999997699999999999999999999999975888888979997278641347886706478862899986899999
Q ss_pred --HHHHHHHCCCCEE
Q ss_conf --9999997799127
Q gi|254780662|r 104 --IIGEIVARCRNLT 116 (1576)
Q Consensus 104 --v~~~l~~~~~~i~ 116 (1576)
+.-.|=..|+.|-
T Consensus 116 ~~fl~~LWD~gl~vG 130 (881)
T PRK05007 116 GELITLLWDLKLEVG 130 (881)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999870899878
No 21
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=89.95 E-value=1.3 Score=22.56 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCCCCCCEEEEEEECCCCCH-----H
Q ss_conf 8899988631997897449989999999999999840589-887178724765558998865799994787743-----8
Q gi|254780662|r 27 SFSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWDH-SSACCIDIREVEGINPSGISISIITVIVDNIPF-----L 100 (1576)
Q Consensus 27 ~~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~~-~~~~~~v~~p~~~~~gw~s~~tvi~iv~dD~Pf-----L 100 (1576)
..+.+.|.+..+...+...-....-.+...+|+.+.--.+ .-+.|.|=---+.+-...|...++ |+.++.|- .
T Consensus 37 ~~l~~~f~~~~~~~~l~~~~a~~~D~~l~~~w~~~~~~~~~~iaLvAVGGYGR~eL~P~SDIDLL-iL~~~~~~~~~~~~ 115 (894)
T PRK00275 37 EVLDERFRSGRDIRRLIEDRAWFVDQILQQAWNQFDWSDDADIALVAVGGYGRGELHPYSDIDLL-ILLDSADHEEFREP 115 (894)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEE-EECCCCCCHHHHHH
T ss_conf 99999986699999999999999999999999966789989979998378640246886706488-86489998689999
Q ss_pred HHHHHHHHHHCCCCEEEEEC
Q ss_conf 99999999977991279984
Q gi|254780662|r 101 YQSIIGEIVARCRNLTMAVH 120 (1576)
Q Consensus 101 vDSv~~~l~~~~~~i~~~~H 120 (1576)
+..+.-.|=..|+.+-.-++
T Consensus 116 i~~~l~~LWD~Gl~vGHSVR 135 (894)
T PRK00275 116 IERFLTLLWDIGLEIGQSVR 135 (894)
T ss_pred HHHHHHHHHCCCCCCCCCCC
T ss_conf 99999998708998785779
No 22
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=88.18 E-value=1.7 Score=21.61 Aligned_cols=92 Identities=5% Similarity=-0.147 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCH----HH
Q ss_conf 889998863199789744998999999999999984058-9887178724765558998865799994787743----89
Q gi|254780662|r 27 SFSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWD-HSSACCIDIREVEGINPSGISISIITVIVDNIPF----LY 101 (1576)
Q Consensus 27 ~~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~-~~~~~~~v~~p~~~~~gw~s~~tvi~iv~dD~Pf----Lv 101 (1576)
..+-.+.|.+.+.++|-.--....-.....+|+...-.. .+-+.|.|=---+++-.+.|...++-+..+..+- .+
T Consensus 23 ~~~~~~~f~~~~i~~l~~~r~~~~d~~l~~~w~~~~~~~~~~~aLvAVGGYGR~eL~P~SDIDlLiL~~~~~~~~~~~~i 102 (862)
T PRK01759 23 KQFELENFSQYDVFELIYNRSDFYDELLIHLWQQFGLEEQNDLALIAVGGYGRREMFPLSDLDFLILTEQSPDEETEEKI 102 (862)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 99999770658899999999999999999999976999999979997278651347886706378756899985899999
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999999779912799
Q gi|254780662|r 102 QSIIGEIVARCRNLTMA 118 (1576)
Q Consensus 102 DSv~~~l~~~~~~i~~~ 118 (1576)
..+.-.|=..|+.+-.-
T Consensus 103 ~~~~~~LWD~gl~vGhs 119 (862)
T PRK01759 103 TQFIQFLWDCGFEVGAS 119 (862)
T ss_pred HHHHHHHHHCCCCCCCC
T ss_conf 99999998089987867
No 23
>TIGR02405 trehalos_R_Ecol trehalose operon repressor; InterPro: IPR012771 Trehalose is a non-reducing disaccharide which can be used as both a carbon source and an osmoprotectant in bacteria. Trehalose uptake into the cytoplasm occurs via a trehalose-specific phosphotransferase system which phosphorylates trehalase to trehalose-6-phosphate (Tre6P) during transport into the cytoplasm, and a hydrolase which hydrolyses Tre6P to glucose and glucose-6-phophate. This entry represents LacI-type TreR, a transcriptional repressor of trehalose uptake found mainly within the gamma-proteobacteria. It does not include the GntR-type TreR's such as those found in Bacillus species. It is capable of binding both the inducer Tre6P and trehalose. Binding of trehalose does not affect the repressor's affinity for its DNA binding site, while binding Tre6P substantially reduces its affinity. The repression activity of TreR is therefore regulated by the ratio of trehalose to Tre6P within the cell . The protein is composed of two domains, an N-terminal DNA-binding helix-turn-helix domain, and a C-terminal effector-binding domain which is homologous to that of LacI. The effector-binding domain is composed of two subdomains, both of which form an alpha-beta-alpha sandwhich, with the effector binding site located at the interface of these subdomains . Tre6P and trehalose bind competitively to this site, with the affinty for trehalose substantially lower than that for Tre6P.; GO: 0003677 DNA binding, 0016566 specific transcriptional repressor activity, 0005991 trehalose metabolic process, 0016481 negative regulation of transcription.
Probab=86.65 E-value=0.34 Score=27.79 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=19.4
Q ss_pred HHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 626885546208999999999748898887879999
Q gi|254780662|r 323 VYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQ 358 (1576)
Q Consensus 323 AY~~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~ 358 (1576)
+.|..+.==|..|+||+.|++.+||.| |-|.++++
T Consensus 21 VLnNe~~V~~~tRERVE~viq~~gF~P-SkSArAMR 55 (311)
T TIGR02405 21 VLNNESKVSIETRERVEAVIQQSGFVP-SKSARAMR 55 (311)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCC-CHHHHHHC
T ss_conf 561688887203368888875158886-42346312
No 24
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.50 E-value=2.1 Score=20.87 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=22.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7999947877438999999999779912799
Q gi|254780662|r 88 SIITVIVDNIPFLYQSIIGEIVARCRNLTMA 118 (1576)
Q Consensus 88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~ 118 (1576)
|+|+|.+.|.|=|+--|...+...|+.|+..
T Consensus 1 TvieV~~~DrpGLL~~i~~~l~~~~l~I~~A 31 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSA 31 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9899997895559999999999889389999
No 25
>PRK03059 PII uridylyl-transferase; Provisional
Probab=85.83 E-value=2.2 Score=20.61 Aligned_cols=93 Identities=9% Similarity=-0.034 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHH----HH
Q ss_conf 88999886319978974499899999999999998405898871787247655589988657999947877438----99
Q gi|254780662|r 27 SFSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWDHSSACCIDIREVEGINPSGISISIITVIVDNIPFL----YQ 102 (1576)
Q Consensus 27 ~~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~v~~p~~~~~gw~s~~tvi~iv~dD~PfL----vD 102 (1576)
+.+.+.|..+.+...+...-...+-......|+.... +++-+.+.|=---+.+-.+.|...++-+..++.+-- +.
T Consensus 23 ~~l~~~f~~~~~~~~l~~~~s~~~D~~l~~lw~~~~~-~~~~aLvAvGGYGR~EL~P~SDIDLLiL~~~~~~~~~~~~i~ 101 (857)
T PRK03059 23 AALLARFRQARNVAALLRALSRLVDQALRRLWQECGL-PATAALVAVGGYGRGELFPYSDVDILVLLPDAPDAALDARIE 101 (857)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 9999998839999999999999999999999995699-989689983786313578867064888658999857999999
Q ss_pred HHHHHHHHCCCCEEEEEC
Q ss_conf 999999977991279984
Q gi|254780662|r 103 SIIGEIVARCRNLTMAVH 120 (1576)
Q Consensus 103 Sv~~~l~~~~~~i~~~~H 120 (1576)
.+.-.|=..|+.+-.-++
T Consensus 102 ~f~~~LWD~gl~vGHsVR 119 (857)
T PRK03059 102 RFIGACWDLGLEIGSSVR 119 (857)
T ss_pred HHHHHHHCCCCCCCCCCC
T ss_conf 999999708998786789
No 26
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.72 E-value=3.1 Score=19.30 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=39.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEE----CCCC-HHHHH
Q ss_conf 799994787743899999999977991279984648999889973742367788766336999995----7999-89999
Q gi|254780662|r 88 SIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHC----LKIT-PEEAI 162 (1576)
Q Consensus 88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Iei----dr~~-~e~~~ 162 (1576)
|+||+...|+|=|..-|.+.|...+.+|..-. +.. .+++....||+.= .+++ ++.++
T Consensus 1 T~iEltg~DRPGLLsei~avLsdl~~~v~~A~---iwT---------------~~~Rva~v~yvtD~~tG~~I~d~~Rla 62 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEAR---AWT---------------HNGRLACVIYVRDEETGAPIDDPIRLA 62 (74)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE---EEE---------------CCCEEEEEEEEEECCCCCCCCCHHHHH
T ss_conf 96887139987269999999986878458878---522---------------377179999997267899678989999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780662|r 163 EIKKQLIFIIE 173 (1576)
Q Consensus 163 ~L~~~L~~VL~ 173 (1576)
.|++.|..||+
T Consensus 63 ~I~~~L~~vl~ 73 (74)
T cd04925 63 SIEDRLDNVLR 73 (74)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999757
No 27
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=81.04 E-value=0.93 Score=23.94 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHCCCC---C------CCCCHHHHHHHH--CCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 421798999870988---5------542888999863--03653044338742111268986200152100000025883
Q gi|254780662|r 1033 AVQLTPEAVAVIGIS---K------QIATPSEIISAI--LMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADK 1101 (1576)
Q Consensus 1033 ~i~ls~~~~~~l~~~---~------~~~~p~eli~~i--L~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~ 1101 (1576)
+-.|+.++|+.|+-. + +-+.|+. |+.+ ..+|||.+ |+|||+..+ +. |-.-|.+.+||++
T Consensus 268 ~~~li~~vR~~LD~aG~~~vKIvaSgglde~~-I~~l~~~gapID~f---GVGt~l~~~-~~-----~~t~DiVevdG~p 337 (355)
T PRK07188 268 NPYLIFALRKALDENGGKHVKIIVSSGFDEKK-IKEFEKQNVPVDIY---GVGSSLLKI-NI-----HFTGDAVELNGKK 337 (355)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHH-HHHHHHCCCCEEEE---EECCCCCCC-CC-----CCEEEEEEECCEE
T ss_conf 89999999999976799871799968999999-99999779970189---506766788-77-----6057799999986
Q ss_pred EEEEE
Q ss_conf 04689
Q gi|254780662|r 1102 VRAKV 1106 (1576)
Q Consensus 1102 lr~kv 1106 (1576)
. +|+
T Consensus 338 ~-aK~ 341 (355)
T PRK07188 338 E-AKA 341 (355)
T ss_pred H-HHC
T ss_conf 3-213
No 28
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.90 E-value=3.5 Score=18.83 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=47.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999747987669898888985695797215446676588873179999814306776668978889999999999
Q gi|254780662|r 541 QIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFKY 616 (1576)
Q Consensus 541 ~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~~ 616 (1576)
.+-+|.++.|-.++++.-+|..+|+.+.+-+-+.- + ++ ..+-.|.+....+..+...+..+.+++++..
T Consensus 3 ei~v~~~Dr~gLf~~i~~~l~~~~l~I~~A~I~t~---~--~g--~~~D~F~V~d~~g~~i~~~~~~~~i~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT---R--DG--YALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEC---C--CC--EEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999689787899999999988985999999985---8--98--6999999988999979999999999999995
No 29
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.36 E-value=1.5 Score=22.12 Aligned_cols=196 Identities=22% Similarity=0.309 Sum_probs=98.6
Q ss_pred EEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99973943686777881379899999996689870038978717897089821444217989998709885542888999
Q gi|254780662|r 978 VAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEII 1057 (1576)
Q Consensus 978 vaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli 1057 (1576)
||.=.|.-..+++=|+-.-+..--....+.|-.+++|- || |-.|+++.-..-+--+.-.||.
T Consensus 116 Val~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dI-------GG-----------L~~Qi~EirE~VELPL~~PElF 177 (406)
T COG1222 116 VALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDI-------GG-----------LDEQIQEIREVVELPLKNPELF 177 (406)
T ss_pred EEECCCCCEEEEECCCCCCCHHHEEEECCCCCCCHHHC-------CC-----------HHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99857761456617875576202001125898786533-------58-----------8999999999840336688899
Q ss_pred HHH-CCCCCEEECCCCCCCE----ECC-CCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEE
Q ss_conf 863-0365304433874211----126-8986200152100000025883046899855510307678999997398683
Q gi|254780662|r 1058 SAI-LMASVDLLWFGGIGTY----IRA-PRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRIN 1131 (1576)
Q Consensus 1058 ~~i-L~a~vDLlw~gGiGTY----vka-~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~in 1131 (1576)
..+ ...|--.|.-|.-||= .|| .+++++ .|+||.|+++--|+||||+-|= -+.=+..=+.+-..|+
T Consensus 178 ~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIrvvgSElVqKYiGEGaRlV-RelF~lArekaPsIIF 249 (406)
T COG1222 178 EELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIRVVGSELVQKYIGEGARLV-RELFELAREKAPSIIF 249 (406)
T ss_pred HHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCC-------EEEEECCHHHHHHHHCCCHHHH-HHHHHHHHHCCCEEEE
T ss_conf 9749999971276689997588999998720586-------6999421999999834116999-9999987414984999
Q ss_pred CCCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5331344373-----244047679998658877079898899889998789-----999999850078999999997500
Q gi|254780662|r 1132 SDAIDNSGGV-----NCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTS-----EVVELVLRNNYLQSLAISLESRKG 1201 (1576)
Q Consensus 1132 tDaidNsaGV-----~~Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~~mtd-----eV~~lVL~~n~~Q~~~ls~~~~~~ 1201 (1576)
-|-||--||- .++|.||.=-.+ +||+.|-. .| ..+...|+.
T Consensus 250 iDEIDAIg~kR~d~~t~gDrEVQRTml----------------eLL~qlDGFD~~~nv-KVI~ATNR~------------ 300 (406)
T COG1222 250 IDEIDAIGAKRFDSGTSGDREVQRTML----------------ELLNQLDGFDPRGNV-KVIMATNRP------------ 300 (406)
T ss_pred EECHHHHHCCCCCCCCCCHHHHHHHHH----------------HHHHHCCCCCCCCCE-EEEEECCCC------------
T ss_conf 831122311113688885099999999----------------999860588978876-899855885------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHCC-CCCHHHHH
Q ss_conf 65179999999999984898824305-99989999
Q gi|254780662|r 1202 MAMMWNFAQLMKFLGKEGALDRELEH-LPSVVSFE 1235 (1576)
Q Consensus 1202 ~~~~~~~~rli~~Le~~g~Ldr~~E~-LP~~~~l~ 1235 (1576)
..++ -.|=+-|++||.+|| ||+.+.-.
T Consensus 301 -D~LD------PALLRPGR~DRkIEfplPd~~gR~ 328 (406)
T COG1222 301 -DILD------PALLRPGRFDRKIEFPLPDEEGRA 328 (406)
T ss_pred -CCCC------HHHCCCCCCCCEEECCCCCHHHHH
T ss_conf -5557------665088754530116898978999
No 30
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=77.07 E-value=4.1 Score=18.19 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=46.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99994787743899999999977991279984648999889973742367788766336999995799989999999999
Q gi|254780662|r 89 IITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQL 168 (1576)
Q Consensus 89 vi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~~L 168 (1576)
+++++..|.|=+|-.|+..|..+|++|..+-.-+... +.++..--.+++.+.-.......+|+++|
T Consensus 1 ~~~v~G~DrpGIv~~it~~La~~~inI~~l~t~~~~a--------------~~sg~~lF~a~~~v~lP~~~~~~~L~~~l 66 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSA--------------PMSGTPLFKAQATLALPAGTDLDALREEL 66 (81)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECC--------------CCCCCCCEEEEEEEECCCCCCHHHHHHHH
T ss_conf 9899808998879999999998699814668777639--------------99981036899999379999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780662|r 169 IFIIEQL 175 (1576)
Q Consensus 169 ~~VL~dV 175 (1576)
...-.+.
T Consensus 67 ~~l~~~l 73 (81)
T cd04869 67 EELCDDL 73 (81)
T ss_pred HHHHHHH
T ss_conf 9998873
No 31
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=76.73 E-value=3.9 Score=18.36 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=15.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 799994787743899999999977991279
Q gi|254780662|r 88 SIITVIVDNIPFLYQSIIGEIVARCRNLTM 117 (1576)
Q Consensus 88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~ 117 (1576)
|+|+|.+.|+|-|+--+...|...|+.|+.
T Consensus 1 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~ 30 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHD 30 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 989999689788999999999887950779
No 32
>PRK05667 dnaG DNA primase; Validated
Probab=72.28 E-value=0.14 Score=31.12 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=24.5
Q ss_pred CHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCC
Q ss_conf 989999999668987003897871789708982144421798999870988
Q gi|254780662|r 997 TFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGIS 1047 (1576)
Q Consensus 997 s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~ 1047 (1576)
...+|++|++.-...-..|-..|-|+.|-.-..--++--+|+++-+.++|.
T Consensus 107 ~~~~~~~l~~~~~~a~~~f~~~L~~~~~~~a~~YL~~Rgl~~~~i~~F~lG 157 (600)
T PRK05667 107 EKSRRQELYEIMELAAKFYQQQLRTPEGAEARQYLYERGLSEETIERFGIG 157 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 256899999999999999999848962089999999759999999983835
No 33
>KOG0728 consensus
Probab=71.41 E-value=0.47 Score=26.54 Aligned_cols=105 Identities=26% Similarity=0.281 Sum_probs=58.6
Q ss_pred CCCEECCCCCEEEEEEEECCCC----CCCHHHHHHHHHCCCEEECCCCCC--CCCCCCC---CHHHHHHHH--HHHHHHC
Q ss_conf 0000025883046899855510----307678999997398683533134--4373244---047679998--6588770
Q gi|254780662|r 1092 NNILRVTADKVRAKVIGEGANL----GLTQQARVVYSLNGGRINSDAIDN--SGGVNCS---DLEVNIKIA--LASAMRD 1160 (1576)
Q Consensus 1092 nd~~rv~g~~lr~kvi~EG~NL----g~Tq~~Rie~a~~Gg~intDaidN--saGV~~S---d~EVniKIl--l~~~~~~ 1160 (1576)
--++||.|++|--|+||||.-+ |+- .-+.+--.|+-|-||. |+-|++| |-||---.| ||++ +
T Consensus 207 c~firvsgselvqk~igegsrmvrelfvm-----arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql--d 279 (404)
T KOG0728 207 CTFIRVSGSELVQKYIGEGSRMVRELFVM-----AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL--D 279 (404)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--C
T ss_conf 07999644999999850138999999999-----8750882675000012123434578986389999999999740--2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHH
Q ss_conf 79898899889998789999999850078999999997500651799999999999848988243059998999
Q gi|254780662|r 1161 GRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSF 1234 (1576)
Q Consensus 1161 g~lt~~~Rn~lL~~mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~~E~LP~~~~l 1234 (1576)
|.-+ .+|.. -.-|..++ .-|=..|-+-|+.||.+||-|.+++-
T Consensus 280 gfea--------------------tknik--------vimatnri---dild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728 280 GFEA--------------------TKNIK--------VIMATNRI---DILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred CCCC--------------------CCCEE--------EEEECCCC---CCCCHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 4000--------------------36626--------99841642---22468663877545556489987788
No 34
>KOG2275 consensus
Probab=70.93 E-value=2.8 Score=19.67 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=69.9
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCC--CCC--CCCCCCCCHHHHHHHHHHHHHH-----C--CCCCCCCCE
Q ss_conf 8177888326899999998808998501105699--998--8431011467899999999998-----0--899654864
Q gi|254780662|r 884 VAADKGTATFSDTANILAQEAKFWLDDAFASGGS--MGY--DHKKMGITARGAWETVKRHFRE-----M--DIDIQSTPF 952 (1576)
Q Consensus 884 vaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs--~Gy--dHK~mGITarGaw~~v~rhfre-----l--g~D~q~~~f 952 (1576)
..=|+|.++-.|.+--.-+|+|+|+=+--++|.+ .+| +|-.||+-.+-+-...+ ||+ + +-....-..
T Consensus 187 filDEG~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv~~~~~--fr~~q~~~l~~~p~~~~~~v 264 (420)
T KOG2275 187 FILDEGGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEE--FREKQVDLLASGPKLALGDV 264 (420)
T ss_pred EEECCCCCCCCCCEEEEEEEECEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHCCCCEECCCE
T ss_conf 8935898875431367888522168999944789877878984389999999999998--68877787604973110562
Q ss_pred EEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCC
Q ss_conf 5996058863324431112766208999739436867778813
Q gi|254780662|r 953 TVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSE 995 (1576)
Q Consensus 953 TvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~ 995 (1576)
|-+-++--+|-|-.|-. .-.--|+||| ++.|.+|.+
T Consensus 265 tT~Nv~~i~GGv~~N~~----P~~~ea~~di---rv~~~~d~~ 300 (420)
T KOG2275 265 TTINVGIINGGVQSNVL----PETFEAAFDI---RVRPHVDVK 300 (420)
T ss_pred EEEEEEEEECCCCCCCC----CHHHEEEEEE---EECCCCCHH
T ss_conf 68864354055124767----6543133226---731578879
No 35
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=69.75 E-value=5.6 Score=16.98 Aligned_cols=53 Identities=21% Similarity=0.440 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHH---C-CC-CCEEEEEECCCE
Q ss_conf 678999999999980899654864599605886332443111---2-76-620899973943
Q gi|254780662|r 929 ARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGML---L-SR-KIQLVAAFDHSD 985 (1576)
Q Consensus 929 arGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmL---l-s~-~i~lvaafdh~h 985 (1576)
|==|-.-++-||||.|++ -++|=.+-||||+. +|-.|+ | -+ .+.+---++==+
T Consensus 203 APAAaDTI~~Hf~dtg~~--~~DYDLIvTGDL~r--vG~~I~~~LL~e~yg~~~~~~Y~DCG 260 (331)
T TIGR02845 203 APAAADTIEAHFKDTGRS--VDDYDLIVTGDLAR--VGSEILRKLLKEEYGYDVTEKYDDCG 260 (331)
T ss_pred HHHHHHHHHHHHHHCCCC--CCEEEEEEECCHHH--HHHHHHHHHHHHHHCCCCCCEECCCC
T ss_conf 268999999999870788--04013678733002--14899999988860875000104564
No 36
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=68.00 E-value=4 Score=18.35 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=38.3
Q ss_pred CCCHHHHHHCCCC---------CCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEE
Q ss_conf 1798999870988---------5542888999863036530443387421112689862001521000000258830468
Q gi|254780662|r 1035 QLTPEAVAVIGIS---------KQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAK 1105 (1576)
Q Consensus 1035 ~ls~~~~~~l~~~---------~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~k 1105 (1576)
.++.++|+.|+.. .+-++++. |+.+-+++||.+ |+||++. + +-.-|-+=|.+.+||++. +|
T Consensus 229 ~l~~~vR~~LD~~G~~~vkI~aSggl~e~~-I~~l~~~gID~~---GVGt~l~--~---ap~ld~~~dlVe~~G~p~-~K 298 (302)
T cd01571 229 YLIREVRWALDIRGYKHVKIFVSGGLDEED-IKELEDVGVDAF---GVGTAIS--K---APPVDFTMDIVEVNGQPI-AK 298 (302)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHH-HHHHHHCCCCEE---ECCCCCC--C---CCCCCEEEEEEEECCEEE-EC
T ss_conf 999999999976698874899969999999-999985799999---8185437--9---988886899999999771-12
Q ss_pred E
Q ss_conf 9
Q gi|254780662|r 1106 V 1106 (1576)
Q Consensus 1106 v 1106 (1576)
.
T Consensus 299 ~ 299 (302)
T cd01571 299 R 299 (302)
T ss_pred C
T ss_conf 4
No 37
>KOG0615 consensus
Probab=67.39 E-value=6.2 Score=16.62 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=85.8
Q ss_pred ECCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCEEEEECCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0885788888999899845---3287428887532787168998899--------8999999999999999898877625
Q gi|254780662|r 792 SDRAADYRTEVLGLVRAQK---VKNAVIVPVGAKGGFYPKRLPSEGR--------RDEIIKIGREAYKTYVRALLSITDN 860 (1576)
Q Consensus 792 SdR~edfrtEvlgL~kaQ~---vKN~vIvp~GaKGgfv~k~~~~~~~--------r~~~~~e~~~~y~~fi~~lLditDN 860 (1576)
++...|-++|+--|+|-|+ |+=++|.+.----=.|+.- -.+++ .-.-...+..-++..+.|++=|-++
T Consensus 217 ~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE~-v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~ 295 (475)
T KOG0615 217 IAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLEY-VEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQ 295 (475)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEE-ECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 25112057899999846898689874216357702899998-14740899987436532115689999999999999875
Q ss_pred CCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHH---HHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6888402883103053898679981778883268999---9999880899850110569999884310114678999999
Q gi|254780662|r 861 FEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTA---NILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVK 937 (1576)
Q Consensus 861 ~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~fsD~A---n~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~ 937 (1576)
.+--.=++|++|..-..+++.|+--+|=|.|-|+--. +-.----+|--+.-.+|+|-.+|+ ++.-|=+.|+-.||-
T Consensus 296 GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~-~kVDiWSlGcvLfvc 374 (475)
T KOG0615 296 GIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYP-SKVDIWSLGCVLFVC 374 (475)
T ss_pred CCCCCCCCCCEEEECCCCCCEEEEEECCCHHHCCCCCHHHHHHCCCCCCCCHHHEECCCEECCC-CHHEEEECCCEEEEE
T ss_conf 8502567711377515774258985024422201565002342488444670213437743266-311034124057887
No 38
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=63.55 E-value=5.6 Score=17.01 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=5.5
Q ss_pred HHHHCCCEEE
Q ss_conf 8985695797
Q gi|254780662|r 559 LLENLGFTVI 568 (1576)
Q Consensus 559 ~l~~~G~~v~ 568 (1576)
-|+++|.+++
T Consensus 59 ~fq~~Gh~~i 68 (402)
T PRK05912 59 RFQDLGHKPI 68 (402)
T ss_pred HHHHCCCCEE
T ss_conf 9998699649
No 39
>KOG0729 consensus
Probab=61.93 E-value=3.8 Score=18.49 Aligned_cols=88 Identities=26% Similarity=0.394 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHCCCCCEEECCCCCCCEEC-----CCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 42888999863036530443387421112-----6898620015210000002588304689985551030767899999
Q gi|254780662|r 1050 IATPSEIISAILMASVDLLWFGGIGTYIR-----APRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYS 1124 (1576)
Q Consensus 1050 ~~~p~eli~~iL~a~vDLlw~gGiGTYvk-----a~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a 1124 (1576)
.+.|+-+.+.-.-.|--.|..|.-||=-- -..++++ -++||-|++|--|+|||||-. -|--|+
T Consensus 197 lL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANRTdA-------cFIRViGSELVQKYvGEGARM-----VRElFe 264 (435)
T KOG0729 197 LLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVIGSELVQKYVGEGARM-----VRELFE 264 (435)
T ss_pred CCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC-------EEEEEHHHHHHHHHHHHHHHH-----HHHHHH
T ss_conf 55888887527899873378689998610899987456674-------587631189999986246899-----999999
Q ss_pred ----HCCCEEECCCCCCCCCCC-----CCCHHHH
Q ss_conf ----739868353313443732-----4404767
Q gi|254780662|r 1125 ----LNGGRINSDAIDNSGGVN-----CSDLEVN 1149 (1576)
Q Consensus 1125 ----~~Gg~intDaidNsaGV~-----~Sd~EVn 1149 (1576)
++.+.|+-|-||--+|-- -+|.||.
T Consensus 265 MAr~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQ 298 (435)
T KOG0729 265 MARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ 298 (435)
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 8523652799841010226720357888727999
No 40
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=60.95 E-value=8.2 Score=15.55 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=44.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC-CHHHHHHHHH
Q ss_conf 9994787743899999999977991279984648999889973742367788766336999995799-9899999999
Q gi|254780662|r 90 ITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKI-TPEEAIEIKK 166 (1576)
Q Consensus 90 i~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~-~~e~~~~L~~ 166 (1576)
+-+.+.|.|=.+-.|...|..+++.|-.+ .+-|+..| .++++.+++|.. +++..++|++
T Consensus 2 Lii~~~D~PGvIg~v~~~Lg~~~INIa~m-----~l~R~~~g-------------~~A~~vi~vD~~v~~~~l~~i~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGM-----QVGRDEPG-------------GEALMVLSVDEPVPDEVLEELRA 61 (73)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHH-----HHCCCCCC-------------CEEEEEEEECCCCCHHHHHHHHC
T ss_conf 89981698992899999998709778884-----32576899-------------87899999089999999999975
No 41
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=60.54 E-value=6.8 Score=16.28 Aligned_cols=10 Identities=10% Similarity=0.421 Sum_probs=5.6
Q ss_pred HHHHCCCEEE
Q ss_conf 8985695797
Q gi|254780662|r 559 LLENLGFTVI 568 (1576)
Q Consensus 559 ~l~~~G~~v~ 568 (1576)
-|+++|.+|+
T Consensus 64 ~fq~~Gh~~i 73 (405)
T PRK13354 64 QFQDAGHRAV 73 (405)
T ss_pred HHHHCCCCEE
T ss_conf 9998699479
No 42
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=60.18 E-value=5.1 Score=17.37 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCCCHHHHHHCCCC---C------CCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEE
Q ss_conf 21798999870988---5------54288899986303653044338742111268986200152100000025883046
Q gi|254780662|r 1034 VQLTPEAVAVIGIS---K------QIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRA 1104 (1576)
Q Consensus 1034 i~ls~~~~~~l~~~---~------~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~ 1104 (1576)
-.++.++|+.|+.. . +-+.++. |+.+ +.+||.+ |+|||+ +++..-|-+-|.+.+||++. +
T Consensus 244 ~~l~~~vR~~LD~~G~~~vkIv~Sgglde~~-I~~l-~~~vD~f---GVGt~l-----~~~~~~d~t~DiVevdG~p~-a 312 (343)
T PRK08662 244 RKIVEEVRWTLDLHGYSHVKIFVSGGLDEED-IREL-RDVVDGF---GVGTSI-----SFAPPVDFSMDIVEVEGKPI-A 312 (343)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCHHH-HHHH-HHHCCEE---EECCCC-----CCCCCCCEEEEEEEECCEEE-E
T ss_conf 9999999998545579982899948999999-9999-8648689---606655-----78988775899999999862-2
Q ss_pred EE
Q ss_conf 89
Q gi|254780662|r 1105 KV 1106 (1576)
Q Consensus 1105 kv 1106 (1576)
|.
T Consensus 313 K~ 314 (343)
T PRK08662 313 KR 314 (343)
T ss_pred CC
T ss_conf 03
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=59.31 E-value=1.9 Score=21.21 Aligned_cols=147 Identities=24% Similarity=0.335 Sum_probs=84.2
Q ss_pred CCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEE
Q ss_conf 48645996058863324431112766208999739436867778813798999999966898700389787178970898
Q gi|254780662|r 949 STPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIIS 1028 (1576)
Q Consensus 949 ~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~ 1028 (1576)
.+.+|+|-|==-+-|-.-.||=..++=.. .|+.-+= -..-.+|.+--.+||=.
T Consensus 91 ~~t~~iV~vLP~~kDp~v~~~EV~E~P~V--~y~diGG-------L~~Q~~E~~E~v~LPlk------------------ 143 (364)
T TIGR01242 91 QQTLAIVDVLPTSKDPLVKGMEVEERPNV--SYEDIGG-------LEKQIREIREAVELPLK------------------ 143 (364)
T ss_pred CCCEEEEEECCCCCCCEEEEEEEECCCCE--EEECCCC-------HHHHHHHHHHHHHCCCC------------------
T ss_conf 78428998467887865787776217823--3402678-------78999999888734688------------------
Q ss_pred ECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCE----ECC-CCCCCCCCCCCCCCCEECCCCCEE
Q ss_conf 214442179899987098855428889998630365304433874211----126-898620015210000002588304
Q gi|254780662|r 1029 RKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTY----IRA-PRENNADIGDKGNNILRVTADKVR 1103 (1576)
Q Consensus 1029 r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTY----vka-~~e~~~~vgd~and~~rv~g~~lr 1103 (1576)
.|+.-+-+||+. |--.|..|.-||= -|| .+|++|- |+||=|+|+-
T Consensus 144 --------~PeLF~~vGI~P---------------PKGvLLyGPPGtGKTLlAKAvA~et~AT-------FIrvVgSElV 193 (364)
T TIGR01242 144 --------KPELFEEVGIEP---------------PKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVGSELV 193 (364)
T ss_pred --------CCHHHHHCCCCC---------------CCCEEEECCCCCCHHHHHHHHHCCCCCE-------EEEEEHHHHH
T ss_conf --------831677628898---------------9865700757976889999863145512-------6886044444
Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCC-----CCCCCHHHHHHHH
Q ss_conf 6899855510307678999997398683533134437-----3244047679998
Q gi|254780662|r 1104 AKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGG-----VNCSDLEVNIKIA 1153 (1576)
Q Consensus 1104 ~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaG-----V~~Sd~EVniKIl 1153 (1576)
-|+|||||.| +-.-=+.--+++--.|+-|-||--|- -++-|.||+=-++
T Consensus 194 ~KyIGEGArL-V~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlm 247 (364)
T TIGR01242 194 RKYIGEGARL-VREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLM 247 (364)
T ss_pred HHHHCCHHHH-HHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 4441331689-99999985306981686101333543211467787315788999
No 44
>COG3108 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.32 E-value=6.2 Score=16.59 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=20.8
Q ss_pred CCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCC
Q ss_conf 288899986303653044338742111268986200152
Q gi|254780662|r 1051 ATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGD 1089 (1576)
Q Consensus 1051 ~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd 1089 (1576)
++--+|-++.++.|. ||.|||-.+.. -|.|+|-
T Consensus 146 V~l~~lr~~~~~~~~-----GGVGyYp~s~s-VH~DvGp 178 (185)
T COG3108 146 VSLWELRNAALSMQG-----GGVGYYPHSNS-VHMDVGP 178 (185)
T ss_pred CCHHHHHHHHHHCCC-----CCEEECCCCCC-EEECCCC
T ss_conf 439999999972848-----85351468885-6735676
No 45
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=58.30 E-value=9 Score=15.20 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=15.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCEE
Q ss_conf 89985551030767899999739868
Q gi|254780662|r 1105 KVIGEGANLGLTQQARVVYSLNGGRI 1130 (1576)
Q Consensus 1105 kvi~EG~NLg~Tq~~Rie~a~~Gg~i 1130 (1576)
=|+++|.|---.|.-.-.++..|.++
T Consensus 212 VV~c~gr~~e~~~wl~~~~~~~Ga~l 237 (374)
T PRK11199 212 VVVCDGRQPEAYQWLLEQIQIWGARL 237 (374)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCEE
T ss_conf 99889998377899999999848789
No 46
>PRK09790 hypothetical protein; Reviewed
Probab=57.71 E-value=6.6 Score=16.40 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=15.0
Q ss_pred CCCCCEEEEEECCCCCCCC
Q ss_conf 6548645996058863324
Q gi|254780662|r 947 IQSTPFTVAGVGDMSGDVF 965 (1576)
Q Consensus 947 ~q~~~fTvvgiGdmsGDVf 965 (1576)
-...|||||-|.++||.+-
T Consensus 34 nketpftvvdidg~sgn~k 52 (91)
T PRK09790 34 NKETPFTVVDIDGPSGNVK 52 (91)
T ss_pred CCCCCEEEEECCCCCCCEE
T ss_conf 7779828996458888644
No 47
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=56.41 E-value=7.9 Score=15.67 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 99997479876698988889856957
Q gi|254780662|r 541 QIKIFHARGPFSLSKRVPLLENLGFT 566 (1576)
Q Consensus 541 ~lk~~~~~~~~~Ls~~~p~l~~~G~~ 566 (1576)
=..-|+.|+|+.=+-|+.||+|+|++
T Consensus 389 D~efYmCGPP~mn~av~kmL~~lGVe 414 (425)
T TIGR01941 389 DCEFYMCGPPLMNAAVIKMLEDLGVE 414 (425)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 42552068832379999998853897
No 48
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=56.32 E-value=0.92 Score=23.98 Aligned_cols=33 Identities=33% Similarity=0.790 Sum_probs=13.3
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCEEE
Q ss_conf 3304042008857888889998998453287428887-53278
Q gi|254780662|r 784 IARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVG-AKGGF 825 (1576)
Q Consensus 784 vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~vIvp~G-aKGgf 825 (1576)
|+|||+-...=.++|. =.+||++.+-+| |+|||
T Consensus 58 VSRGG~KL~~~L~~F~---------~~vk~ki~lD~GsS~GGF 91 (240)
T TIGR00478 58 VSRGGEKLKEALEEFE---------VDVKNKIVLDVGSSTGGF 91 (240)
T ss_pred ECCHHHHHHHHCCCCC---------EEECCEEEEEECCCCCHH
T ss_conf 0504589998535433---------133786899705673048
No 49
>pfam11814 DUF3335 Domain of unknown function (DUF3335). This family of proteins are functionally uncharacterized. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=55.62 E-value=9.8 Score=14.86 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=11.4
Q ss_pred CCCCEEEEEECCCEEEE-CCCCCC
Q ss_conf 76620899973943686-777881
Q gi|254780662|r 972 SRKIQLVAAFDHSDIFI-DPDPNS 994 (1576)
Q Consensus 972 s~~i~lvaafdh~hif~-DP~PD~ 994 (1576)
++|=-+|.++|..+|++ ||+.|+
T Consensus 166 ~PHWV~v~g~d~~~vyihDP~~d~ 189 (228)
T pfam11814 166 APHWVLVTGIDDDFIYIHDPDVDH 189 (228)
T ss_pred CCCEEEEEEECCCEEEEECCCCCC
T ss_conf 983899997469989985999885
No 50
>KOG3004 consensus
Probab=54.52 E-value=7.4 Score=15.92 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=52.7
Q ss_pred CCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCH--HHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 88554620899999999974889888787999998722894--8860589899999999997310578517999746668
Q gi|254780662|r 326 QRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPR--DELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFN 403 (1576)
Q Consensus 326 ~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPR--DELFQ~s~eeL~~~a~gIL~L~eR~rvRLFlR~D~fg 403 (1576)
.+...||- ++.++....|...+|+++.|-++|..|-. -+||- .-..-.+..-+=.|.-++.+++++++...|
T Consensus 71 ~s~~Gip~----lR~~~k~~k~kgKg~e~~dL~~llr~y~~WgH~lfP--k~kf~D~i~~~etLGk~r~vkv~~~r~rLg 144 (305)
T KOG3004 71 ISEKGIPA----LRDCFKKAKFKGKGHEYIDLKELLRSYQHWGHELFP--KAKFDDFINRVETLGKKREVKVDLLRYRLG 144 (305)
T ss_pred CCCCCCHH----HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 07557667----888776367588897524799999999988876555--101678999987206531012565677742
Q ss_pred CEE
Q ss_conf 989
Q gi|254780662|r 404 HFF 406 (1576)
Q Consensus 404 RFv 406 (1576)
-|+
T Consensus 145 ~~~ 147 (305)
T KOG3004 145 YFP 147 (305)
T ss_pred CCC
T ss_conf 573
No 51
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=54.01 E-value=10 Score=14.66 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 147999999999987528887752048899999999999863036832779--9999999999752228730589
Q gi|254780662|r 669 KNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDT--VLRSYVNLISGTLRTNYFQKNQ 741 (1576)
Q Consensus 669 ~~p~~~~~l~~~F~~rFdP~~~~~~r~~~~~~~~~~~~~~l~~V~~ld~dr--ilr~~~~~i~atlRTN~y~~~~ 741 (1576)
-||.+.+.++.-.....+|. +++--.+...+.+..-|++|...-+++ -+|..++-++.||+.+-|..+.
T Consensus 13 L~p~l~~~i~~di~~~l~~~----d~~YFr~sRE~rfG~~Lee~~~~r~~~~~~~~~~L~PlR~~L~~q~fl~G~ 83 (124)
T cd03202 13 LVPGLFPLIVPDIHDLLDPP----DQAYFRQSREKRFGRSLEEVAAGREAALANFRAALEPLRATLKGQPFLGGA 83 (124)
T ss_pred HHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 62999999899898615842----189999999999589899993460879999999998999998539988989
No 52
>TIGR01660 narH nitrate reductase, beta subunit; InterPro: IPR006547 The nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and are b-type cytochromes that receive electrons from the quinone pool and transfers them to the beta subunit. The sequences in this family are the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for Gram-positive and Gram-negative bacteria. A few thermophiles and archaea also match the model. A number of the sequences in this set are experimentally characterised, these include: E.Coli NarH (P11349 from SWISSPROT) and NarY (P19318 from SWISSPROT) , , P42176 from SWISSPROT from Bacillus subtilis, and related proteins from Psuedomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans.; GO: 0008940 nitrate reductase activity, 0042126 nitrate metabolic process, 0009325 nitrate reductase complex.
Probab=53.91 E-value=4.8 Score=17.60 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=19.0
Q ss_pred HHHHHHCCCCHHHHHHH---HHHHHHHHHHCCCCCHHHH
Q ss_conf 69999639989999999---9999999881888898999
Q gi|254780662|r 628 NHLIMLTDLRVYEISVL---RSYARYLRQASVTWSQNFI 663 (1576)
Q Consensus 628 n~Lv~~~~l~~r~v~~l---ra~~~yl~Q~~~~~s~~~i 663 (1576)
..++-.-||+-.||.=+ =|.|+|=-.+-+|-|...+
T Consensus 428 ~~~~~~VGLt~~Q~~~MYr~LA~A~YeDRFViP~~HRE~ 466 (495)
T TIGR01660 428 LEVLEDVGLTEQQIEEMYRYLAIANYEDRFVIPSSHREI 466 (495)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCEECCCCHHHH
T ss_conf 699976288888999999997411557743327740778
No 53
>KOG0338 consensus
Probab=53.68 E-value=2.7 Score=19.80 Aligned_cols=51 Identities=33% Similarity=0.482 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCC---------CCCHHHHHHHH--HHHHHHHHHHH
Q ss_conf 33134437324404767999865887707---------98988998899--98789999999
Q gi|254780662|r 1133 DAIDNSGGVNCSDLEVNIKIALASAMRDG---------RLTLENRNKLL--SSMTSEVVELV 1183 (1576)
Q Consensus 1133 DaidNsaGV~~Sd~EVniKIll~~~~~~g---------~lt~~~Rn~lL--~~mtdeV~~lV 1183 (1576)
|-+-||.+++-|+.||.|-==-+.....| .||.+.|..+| +.||++|-+|+
T Consensus 315 DHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~ 376 (691)
T KOG0338 315 DHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLA 376 (691)
T ss_pred HHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 87515887653432577733388899999999999999855102300121122578899999
No 54
>KOG2052 consensus
Probab=51.60 E-value=9.5 Score=14.95 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 39989999999999999988
Q gi|254780662|r 634 TDLRVYEISVLRSYARYLRQ 653 (1576)
Q Consensus 634 ~~l~~r~v~~lra~~~yl~Q 653 (1576)
-..-|.....||.+++-++-
T Consensus 462 ipnrW~s~~~l~~m~klMke 481 (513)
T KOG2052 462 IPNRWKSDPALRVMAKLMKE 481 (513)
T ss_pred CCCCCCCCHHHHHHHHHHHH
T ss_conf 89533257999999999998
No 55
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=50.09 E-value=12 Score=14.19 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=80.3
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCC----CCCCC
Q ss_conf 99997179877737989999999999854327799997501110048978865279889999999997323----78861
Q gi|254780662|r 452 HFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYKSAGDGVPRFIFSQTFRDVFSPEKAVEDLPYIISCA----EGKEK 527 (1576)
Q Consensus 452 Hfiir~~~~~~~~vD~~~LE~~i~~~~rsW~D~L~~al~~~~~~~aFp~~Yre~f~p~~Av~Di~~le~l~----~~~~~ 527 (1576)
|+++-+-+.+.|-+ ++++-+.+.+.--+|.|-=...+|....--..-. .+.. .+.++|.+. ..-.+
T Consensus 8 ~lvit~~G~DrpGi-v~~v~~~~~~~g~ni~dSrm~~lg~~f~~imlvS------g~~~---ai~~lE~~Lp~~~~el~L 77 (183)
T PRK11589 8 YLVITALGADRPGI-VNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS------GSWN---AITLIESTLPLKGAELDL 77 (183)
T ss_pred EEEEEEECCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEEC------CCHH---HHHHHHHHCCHHCCCCCE
T ss_conf 79999970898738-9999999997699872666887457069999940------8875---889998616022055774
Q ss_pred EEEEECC------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 5665037------8887079999747987669898888985695797215446676588873179999814306776668
Q gi|254780662|r 528 LRVCFEN------KEDGKVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARF 601 (1576)
Q Consensus 528 ~~~~~~~------~~~~~~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~ 601 (1576)
.+...+. ..+..+.+.++..+.|=.+.++-..|...|+.+.+=.+... +.+. .+...+.-.+.+.. +...
T Consensus 78 ~~~~~rt~~~~~~~~~~~~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~t~-~A~~-~~~~~f~~~~t~~i--Pa~~ 153 (183)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQ-PAEG-ERAAQLHIQITAHS--PASQ 153 (183)
T ss_pred EEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEEE-CCCC-CCCCEEEEEEEECC--CCCC
T ss_conf 999962566667677815999999789898899999999986998765222114-4999-99736999999807--9989
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 97888999999999
Q gi|254780662|r 602 DLVDRRDALVEAFK 615 (1576)
Q Consensus 602 ~~~~~~~~~~~~~~ 615 (1576)
+++.+++.|++.-.
T Consensus 154 ~i~~L~~~f~~lc~ 167 (183)
T PRK11589 154 DAANIEQAFKALCT 167 (183)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999999
No 56
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.47 E-value=12 Score=14.11 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=44.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC-CHHHHHHHH
Q ss_conf 9994787743899999999977991279984648999889973742367788766336999995799-989999999
Q gi|254780662|r 90 ITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKI-TPEEAIEIK 165 (1576)
Q Consensus 90 i~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~-~~e~~~~L~ 165 (1576)
+.+.+.|.|=.+-+|...|.+.++.|-. +.+-|...|. .+++.+++|.. +++.+++|+
T Consensus 2 L~i~~~D~PG~Ig~i~~~L~~~~INIa~-----m~v~R~~~g~-------------~A~~ii~~D~~v~~~~l~~i~ 60 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAF-----MRVSRKEKGD-------------QALMVIEVDQPIDEEVIEEIK 60 (71)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCHH-----EEEECCCCCC-------------EEEEEEECCCCCCHHHHHHHH
T ss_conf 8999448699199999999865968036-----1875158997-------------899999928999999999997
No 57
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=48.78 E-value=12 Score=14.03 Aligned_cols=47 Identities=28% Similarity=0.280 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 87899999998500789999999975006517999999999998489882
Q gi|254780662|r 1174 SMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDR 1223 (1576)
Q Consensus 1174 ~mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr 1223 (1576)
.+-+++.++|..++.. ..|..+++=.--.+..+|+|+.||+.|..-.
T Consensus 5 ~l~~~a~~~V~~~~~~---S~S~lQR~l~IGynRAariid~lE~~GiVsp 51 (63)
T smart00843 5 ELYDEAVELVIETQKA---STSLLQRRLRIGYNRAARLIDQLEEEGIVGP 51 (63)
T ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999999980862---4899999972050699999999999858788
No 58
>pfam05951 Peptidase_M15_2 Bacterial protein of unknown function (DUF882). This family consists of a series of hypothetical bacterial proteins of unknown function.
Probab=48.77 E-value=6.4 Score=16.51 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCHHHHHHHHCCCCCEEECCCCCCCEECCC-CCCCCCCC
Q ss_conf 288899986303653044338742111268-98620015
Q gi|254780662|r 1051 ATPSEIISAILMASVDLLWFGGIGTYIRAP-RENNADIG 1088 (1576)
Q Consensus 1051 ~~p~eli~~iL~a~vDLlw~gGiGTYvka~-~e~~~~vg 1088 (1576)
+++.+|-++.+.. -.||+|.|-+++ +=-|.|+|
T Consensus 115 v~~~~l~~~a~~l-----~~GGVG~Yp~sgs~FVHvD~G 148 (153)
T pfam05951 115 VPLKKLRDAALKL-----QVGGVGYYPTSGSPFVHMDVG 148 (153)
T ss_pred CCHHHHHHHHHHC-----CCCCEEEECCCCCCEEEECCC
T ss_conf 9999999999976-----798279817889973886989
No 59
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=48.52 E-value=12 Score=14.00 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 244047679998658877079
Q gi|254780662|r 1142 NCSDLEVNIKIALASAMRDGR 1162 (1576)
Q Consensus 1142 ~~Sd~EVniKIll~~~~~~g~ 1162 (1576)
..-|+++|.+++-..+..-|.
T Consensus 530 vVEDn~iN~~V~~~~L~~lG~ 550 (779)
T PRK11091 530 LVEDIELNVIVARSLLEKLGN 550 (779)
T ss_pred EECCCHHHHHHHHHHHHHCCC
T ss_conf 986889999999999997599
No 60
>pfam11711 Tim54 Inner membrane protein import complex subunit Tim54. Mitochondrial function depends on the import of hundreds of different proteins synthesized in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targetting information, into the inner membrane.
Probab=47.95 E-value=12 Score=14.20 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=18.9
Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887532787168998899899999999999999989887
Q gi|254780662|r 817 VPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRALLS 856 (1576)
Q Consensus 817 vp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~lLd 856 (1576)
=|.|++|.+++ |..+||-||+||-.
T Consensus 165 d~~~~~G~IvI---------------GRha~KEYi~GlHE 189 (378)
T pfam11711 165 DPPGAGGVVVI---------------GRHAWKEYIRGLHE 189 (378)
T ss_pred CCCCCCCCEEE---------------CCCHHHHHHHHHCC
T ss_conf 87778853796---------------57308999977014
No 61
>COG5514 Uncharacterized conserved protein [Function unknown]
Probab=47.45 E-value=5.1 Score=17.40 Aligned_cols=18 Identities=33% Similarity=0.296 Sum_probs=12.5
Q ss_pred CCCCEEEEEECCCEEEECC
Q ss_conf 7662089997394368677
Q gi|254780662|r 972 SRKIQLVAAFDHSDIFIDP 990 (1576)
Q Consensus 972 s~~i~lvaafdh~hif~DP 990 (1576)
|++ -||+..-|+|||---
T Consensus 79 s~Q-~Lv~~~Yh~~vfr~~ 96 (203)
T COG5514 79 SPQ-LLVGLRYHSHVFRPG 96 (203)
T ss_pred CCC-EEEEEEEEEECCCCC
T ss_conf 800-057776321115566
No 62
>pfam00345 Pili_assembly_N Gram-negative pili assembly chaperone, N-terminal domain. C2 domain-like beta-sandwich fold.
Probab=46.91 E-value=8.9 Score=15.23 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=40.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCH
Q ss_conf 65799994787743899999999977991279984-64899988997374236778876633699999579998
Q gi|254780662|r 86 SISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVH-PVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITP 158 (1576)
Q Consensus 86 ~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~H-Pvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~ 158 (1576)
..++--..+++.|+||.|-........-...+++. |++.++-+....+.=+........+||+.++-+..+.+
T Consensus 17 ~~si~v~N~~~~p~LvQs~v~~~~~~~~~~pfivtPPlfrl~~~~~~~vRI~~~~~lp~drEslf~l~~~~IP~ 90 (119)
T pfam00345 17 EASLTVSNTGDYPYLVQSWVDDGDEKSKTSPFIVTPPLFRLEPGSGQTLRIYLGGSLPQDRESLFWLNVLEIPP 90 (119)
T ss_pred EEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEECCCEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEEECCC
T ss_conf 68999993999948999998779997664887975960789999916999990899999705999999998189
No 63
>pfam10089 consensus
Probab=46.91 E-value=7.7 Score=15.78 Aligned_cols=11 Identities=45% Similarity=1.029 Sum_probs=8.7
Q ss_pred EECCCEEEECC
Q ss_conf 97394368677
Q gi|254780662|r 980 AFDHSDIFIDP 990 (1576)
Q Consensus 980 afdh~hif~DP 990 (1576)
-|||-|||+|=
T Consensus 33 P~DHPHvflDm 43 (47)
T pfam10089 33 PFDHPHVFLDM 43 (47)
T ss_pred CCCCCEEEEEC
T ss_conf 99998781612
No 64
>pfam09015 NgoMIV_restric NgoMIV restriction enzyme. Members of this family are prokaryotic DNA restriction enzymes, exhibiting an alpha/beta structure, with a central region comprising a mixed six-stranded beta-sheet with alpha-helices on each side. A long 'arm' protrudes out of the core of the domain between strands beta2 and beta3 and is mainly involved in the tetramerisation interface of the protein. These restriction enzymes recognize the double-stranded sequence GCCGGC and cleave after G-1.
Probab=45.87 E-value=12 Score=14.01 Aligned_cols=18 Identities=56% Similarity=0.785 Sum_probs=14.4
Q ss_pred ECCHHHHHHHHHHHHHHH
Q ss_conf 088578888899989984
Q gi|254780662|r 792 SDRAADYRTEVLGLVRAQ 809 (1576)
Q Consensus 792 SdR~edfrtEvlgL~kaQ 809 (1576)
|||.++-|||.|+|+.--
T Consensus 183 SDRaQN~RtEalnliRnR 200 (277)
T pfam09015 183 SDRAQNTRTEALNLIRNR 200 (277)
T ss_pred CHHHHHHHHHHHHHHHHC
T ss_conf 111122578898888733
No 65
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=45.72 E-value=12 Score=14.12 Aligned_cols=14 Identities=43% Similarity=0.916 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999980899
Q gi|254780662|r 933 WETVKRHFREMDID 946 (1576)
Q Consensus 933 w~~v~rhfrelg~D 946 (1576)
|+-|+.-|.|||-|
T Consensus 99 f~dV~~rFkeMGfD 112 (134)
T TIGR01501 99 FEDVEKRFKEMGFD 112 (134)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 36788887645873
No 66
>KOG0726 consensus
Probab=45.70 E-value=7.1 Score=16.10 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=56.3
Q ss_pred CCHHHHHHH-HCCCCCEEECCCCCCC----EECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 288899986-3036530443387421----11268986200152100000025883046899855510307678999997
Q gi|254780662|r 1051 ATPSEIISA-ILMASVDLLWFGGIGT----YIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSL 1125 (1576)
Q Consensus 1051 ~~p~eli~~-iL~a~vDLlw~gGiGT----Yvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~ 1125 (1576)
+|-.|+... -.+.|--.+..|--|| .-||-. ..-+-.++||-|.+|--|+.|+|..| +-|.=|+.-+.
T Consensus 205 LthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVA------NqTSATFlRvvGseLiQkylGdGpkl-vRqlF~vA~e~ 277 (440)
T KOG0726 205 LTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVA------NQTSATFLRVVGSELIQKYLGDGPKL-VRELFRVAEEH 277 (440)
T ss_pred CCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHC
T ss_conf 898789997288999705886799975368888772------45521245565089999873655199-99999888752
Q ss_pred CCCEEECCCCCCCCC
Q ss_conf 398683533134437
Q gi|254780662|r 1126 NGGRINSDAIDNSGG 1140 (1576)
Q Consensus 1126 ~Gg~intDaidNsaG 1140 (1576)
+--.++.|-||--|+
T Consensus 278 apSIvFiDEIdAiGt 292 (440)
T KOG0726 278 APSIVFIDEIDAIGT 292 (440)
T ss_pred CCCEEEEEHHHHHCC
T ss_conf 982698640011045
No 67
>KOG2872 consensus
Probab=45.15 E-value=14 Score=13.60 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=70.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEECC------EEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9997479876698988889856957972154------4667658887317999981430677666897888999999999
Q gi|254780662|r 542 IKIFHARGPFSLSKRVPLLENLGFTVISEDT------FEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFK 615 (1576)
Q Consensus 542 lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~------y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~ 615 (1576)
++-|..+..+..||+|-+++-||+.|.-+-. -.++.. .|.. -++++.. ....+.-+.+.+. ...
T Consensus 69 ~rrF~~DaaIIFSDILvipqalgm~v~m~egkGP~~p~Plr~~--eDl~--rl~~~~~-----~~s~L~yVgdAit-~~R 138 (359)
T KOG2872 69 LRRFRLDAAIIFSDILVIPQALGMPVDMVEGKGPVFPEPLRVP--EDLK--RLRDPEV-----VESELGYVGDAIT-LTR 138 (359)
T ss_pred HHCCCCCEEEEEECCCCCCHHCCCEEEEEECCCCCCCCCCCCH--HHHH--HHCCCCC-----HHHHCCHHHHHHH-HHH
T ss_conf 3304886268852123370532960798515688789988897--8998--7426851-----4554026999999-999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99769875643569999639989999999999999988188889899999997147999999999987
Q gi|254780662|r 616 YIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRY 683 (1576)
Q Consensus 616 ~~~~~~~e~D~~n~Lv~~~~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~ 683 (1576)
....|++.-=|| .|-.| ++.-|+-.-|-+-+...+.+-+..||+..+.|+..+.-
T Consensus 139 ~kl~g~vpl~GF------~GaPw-------Tlm~YmiEGGgSkt~~~aK~w~~~~Pe~sh~lL~~lTd 193 (359)
T KOG2872 139 QKLDGRVPLIGF------VGAPW-------TLMTYMIEGGGSKTFTQAKRWLFQYPEVSHALLQILTD 193 (359)
T ss_pred HHHCCCCCEEEE------CCCCH-------HHHEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 985685642431------48874-------34123220787206999999988684899999999999
No 68
>pfam09825 BPL_N Biotin-protein ligase, N terminal. The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain.
Probab=45.01 E-value=14 Score=13.58 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCH
Q ss_conf 999999999999881888898
Q gi|254780662|r 640 EISVLRSYARYLRQASVTWSQ 660 (1576)
Q Consensus 640 ~v~~lra~~~yl~Q~~~~~s~ 660 (1576)
+..-+.-+..+|.++|+.-++
T Consensus 240 d~~R~~FLk~~L~KLGL~v~~ 260 (364)
T pfam09825 240 EKARLVFLRECLTKLGLKVND 260 (364)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 688999999999995885488
No 69
>pfam01764 Lipase_3 Lipase (class 3).
Probab=44.26 E-value=14 Score=13.50 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 8883268999999988089985011056999988431011467899999999998089965486459960588
Q gi|254780662|r 888 KGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM 960 (1576)
Q Consensus 888 kgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdm 960 (1576)
.||.++.||.+.+... +..-=..+++.|+=|+.+--.++..|.-++..++++- + +..++.++-+|-=
T Consensus 5 RGT~s~~d~~~dl~~~----~~~~~~~~~~~~~vH~GF~~~~~~~~~~i~~~l~~~~-~-~~~~~~l~itGHS 71 (141)
T pfam01764 5 RGTNTILEWLTDLDFS----LVPFDLLFVSGGKVHKGFLDAYTSVRDQILEELKRLL-E-KYPDYKIVVTGHS 71 (141)
T ss_pred CCCCCHHHHHHHCCCC----CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH-H-HCCCCEEEEEECC
T ss_conf 6889879999977076----2617777999818605699999999999999999999-9-7899769998056
No 70
>pfam09397 Ftsk_gamma Ftsk gamma domain. This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=43.86 E-value=14 Score=13.45 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 878999999985007899999999750065179999999999984898824
Q gi|254780662|r 1174 SMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRE 1224 (1576)
Q Consensus 1174 ~mtdeV~~lVL~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~ 1224 (1576)
.+-+++.++|...+.. ..|..+++=.--.+..+|+|..||+.|..-..
T Consensus 7 ~l~~~a~~~V~~~~~~---S~S~lQR~~~IGynRAariid~LE~~GiVsp~ 54 (67)
T pfam09397 7 ELYDEAVEFVIETQKA---STSLLQRRLRIGYNRAARLIEQMEEEGIVGPA 54 (67)
T ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 8999999999981863---48999999710506999999999998488887
No 71
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=43.27 E-value=14 Score=13.38 Aligned_cols=13 Identities=46% Similarity=1.076 Sum_probs=9.7
Q ss_pred CCCCC-CHHHCCCC
Q ss_conf 70038-97871789
Q gi|254780662|r 1011 SWQDF-DRKVLSKG 1023 (1576)
Q Consensus 1011 sw~dy-d~~liS~g 1023 (1576)
||+.| |..|+..|
T Consensus 1 SWq~Yvd~~L~~tg 14 (127)
T cd00148 1 SWQAYVDDNLLGTG 14 (127)
T ss_pred CHHHHHHHHHCCCC
T ss_conf 97897877750256
No 72
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=42.93 E-value=14 Score=13.55 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=3.6
Q ss_pred HHHHHHHHCH
Q ss_conf 9999998543
Q gi|254780662|r 472 EGVRSIVACW 481 (1576)
Q Consensus 472 ~~i~~~~rsW 481 (1576)
+-+..+...|
T Consensus 78 ~lM~~L~~~~ 87 (361)
T TIGR02143 78 RLMPALIAAL 87 (361)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 73
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=42.84 E-value=15 Score=13.33 Aligned_cols=15 Identities=20% Similarity=0.053 Sum_probs=7.5
Q ss_pred HHHHHHHCCCHHHHH
Q ss_conf 999987228948860
Q gi|254780662|r 356 MLQNTLEFYPRDELF 370 (1576)
Q Consensus 356 ~L~~ILEtyPRDELF 370 (1576)
++++++-.|+-|+++
T Consensus 100 alR~vig~~~~~~vl 114 (242)
T cd03405 100 ALRAEFGKRTLIELV 114 (242)
T ss_pred HHHHHHCCCCHHHHH
T ss_conf 999996367488874
No 74
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.67 E-value=15 Score=13.31 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=41.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHH
Q ss_conf 9994787743899999999977991279984648999889973742367788766336999995799989
Q gi|254780662|r 90 ITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPE 159 (1576)
Q Consensus 90 i~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e 159 (1576)
+.|.++|.|=.+.-+++.+..+|.+|..+.--+. + ..+++||+|++..++.
T Consensus 3 l~I~a~nk~GVL~~itgvIa~hg~NItytqqfi~---~----------------~g~~~iY~ElE~v~d~ 53 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE---R----------------EGKARIYMELEGVGDI 53 (72)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEE---C----------------CCEEEEEEEEECCCCH
T ss_conf 7999568774699988799864898699999980---7----------------9828999999679998
No 75
>KOG3388 consensus
Probab=42.26 E-value=15 Score=13.26 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHCCCCCEE---EEECCCCCCCCH---------HHHHHCCCCCCCCCHHHHHH-HHCCCCCEEECCC--CC
Q ss_conf 987003897871789708---982144421798---------99987098855428889998-6303653044338--74
Q gi|254780662|r 1009 SSSWQDFDRKVLSKGGMI---ISRKEKAVQLTP---------EAVAVIGISKQIATPSEIIS-AILMASVDLLWFG--GI 1073 (1576)
Q Consensus 1009 rssw~dyd~~liS~gGgv---~~r~~k~i~ls~---------~~~~~l~~~~~~~~p~eli~-~iL~a~vDLlw~g--Gi 1073 (1576)
++|..-|+.++-|.+|-- .+-|.-.-|+.| -|..+-|.+.-+++-.+.++ +-+..|+|+||.- |-
T Consensus 9 ~~s~~s~~~S~~S~s~~~pv~~~mSei~rPi~pvLd~qKi~slm~Tmkn~~~c~les~d~~~~aGelpPiDvl~v~~~G~ 88 (136)
T KOG3388 9 PISLRSFSTSAHSSSGSPPVEGPMSEIVRPIPPVLDLQKIRSLMETMKNDQNCVLESEDSIRQAGELPPIDVLEVDSEGG 88 (136)
T ss_pred CHHHHHHEEEHHCCCCCCCEECCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 22453403310016999954645120445788646989999999985089763313577887437789812899951796
Q ss_pred CCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEE
Q ss_conf 21112689862001521000000258830468998
Q gi|254780662|r 1074 GTYIRAPRENNADIGDKGNNILRVTADKVRAKVIG 1108 (1576)
Q Consensus 1074 GTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~ 1108 (1576)
.+|--=+|=-..+.-|+.-. ..+|||++-
T Consensus 89 ~~YyaFgGCHRleAhdrlgr------ptiRcKlvk 117 (136)
T KOG3388 89 DYYYAFGGCHRLEAHDRLGR------PTIRCKLVK 117 (136)
T ss_pred EEEEEECCCHHHHHHHHHCC------CCEEEEEEC
T ss_conf 67886176424478886179------854678734
No 76
>KOG1755 consensus
Probab=42.06 E-value=13 Score=13.80 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=19.7
Q ss_pred CCCCCC------------CHHHCCC-CCEEEEECCCCCCCCHHH
Q ss_conf 870038------------9787178-970898214442179899
Q gi|254780662|r 1010 SSWQDF------------DRKVLSK-GGMIISRKEKAVQLTPEA 1040 (1576)
Q Consensus 1010 ssw~dy------------d~~liS~-gGgv~~r~~k~i~ls~~~ 1040 (1576)
+||++| +.+.++. ||-||.+|+.- .++|+.
T Consensus 1 ~~Wq~Yvd~~l~~~~~v~~AAIvg~~~~SVWA~S~~f-~~~~~e 43 (128)
T KOG1755 1 MSWQAYVDDHLLGTGHVTRAAIVGYDGGSVWAASAGF-NVKPSE 43 (128)
T ss_pred CCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCC-CCCHHH
T ss_conf 9788987876436533011468703797069964887-425888
No 77
>pfam04228 Zn_peptidase Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).
Probab=41.89 E-value=15 Score=13.22 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 523899988870999999999999999981
Q gi|254780662|r 1318 GSCFVVSLAKETGSSTEDVIRSAVIAYAGY 1347 (1576)
Q Consensus 1318 G~tF~~rl~e~tGa~~~~i~rAy~~a~~if 1347 (1576)
-.+|...|...-|++ .+.+.||++|.|+=
T Consensus 151 D~~Ff~~l~~~~ga~-GdfA~aYViAHEvG 179 (292)
T pfam04228 151 DTSFYNELSQKLGAS-GDFAQAYVIAHEVG 179 (292)
T ss_pred CCHHHHHHHHHCCCC-CCHHHHHHHHHHHH
T ss_conf 100899999972899-60688999887550
No 78
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=40.93 E-value=14 Score=13.51 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHCCEEEEEEEEE
Q ss_conf 8999999997289188104799
Q gi|254780662|r 208 EALTFLNWLNEDNFQFMGMRYH 229 (1576)
Q Consensus 208 Ea~aFL~WL~ddhFtFLGyReY 229 (1576)
-+.|+.+-+.+|-|-..|=|.|
T Consensus 79 ~tLDYI~~i~~df~E~~GDRay 100 (329)
T TIGR00513 79 YTLDYIELIFDDFFELHGDRAY 100 (329)
T ss_pred CHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7688999986122000367788
No 79
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=40.92 E-value=9.8 Score=14.87 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 69898888985695797215446676588873179999814306776668978889999
Q gi|254780662|r 552 SLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDAL 610 (1576)
Q Consensus 552 ~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~ 610 (1576)
-||+.=|+=+-| +-+..||+|.+-+-=....+++||+ .-|+- .-..+..+..|+-+
T Consensus 191 iLsetPPv~~EL-IY~~h~RGFALCSmRS~~rSRYY~Q-~pL~D-~vedWSDd~FW~EL 246 (393)
T TIGR02360 191 ILSETPPVSHEL-IYSNHERGFALCSMRSETRSRYYVQ-VPLTD-KVEDWSDDRFWEEL 246 (393)
T ss_pred HHCCCCCCCCCC-CCCCCCCCHHHHHHCCCCCCCEEEE-ECCCC-CCCCCCHHHHHHHH
T ss_conf 205786886444-1036763024553203656735887-14568-87788707789998
No 80
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=40.34 E-value=16 Score=13.03 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=6.4
Q ss_pred CCCCCCHHHHHHHHCC
Q ss_conf 8554288899986303
Q gi|254780662|r 1047 SKQIATPSEIISAILM 1062 (1576)
Q Consensus 1047 ~~~~~~p~eli~~iL~ 1062 (1576)
....++-+++|.+++.
T Consensus 68 ~~~~ls~~~~i~lm~~ 83 (113)
T cd03033 68 VPEALDEEEALALMIA 83 (113)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 8133999999999986
No 81
>PRK00194 hypothetical protein; Validated
Probab=40.05 E-value=16 Score=13.00 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=46.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf 57999947877438999999999779912799846489998899737423677887663369999957999899999999
Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKK 166 (1576)
Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~ 166 (1576)
..||.++..|+|=+|-.|+..|..+|.+|.-+--.++ +| .--..+.++++.. +...++|++
T Consensus 3 ~avITV~G~DrpGIVa~Vt~~La~~~~NI~DisQti~------~g------------~F~M~m~vd~~~~-~~~~~~l~~ 63 (90)
T PRK00194 3 KAIITVIGKDRVGIVAGVSTVLAELNVNILDISQTIM------DG------------YFTMIMLVDISKS-DKDFAALQE 63 (90)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCEE------CC------------EEEEEEEEEECCC-CCCHHHHHH
T ss_conf 6999998799887899999999986999895511210------57------------4689999983676-799999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780662|r 167 QLIFIIEQ 174 (1576)
Q Consensus 167 ~L~~VL~d 174 (1576)
+|...-++
T Consensus 64 ~L~~~~~~ 71 (90)
T PRK00194 64 ELEELGKE 71 (90)
T ss_pred HHHHHHHH
T ss_conf 99999987
No 82
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.95 E-value=16 Score=12.99 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=46.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 79999478774389999999997799127998464899988997374236778876633699999579998999999999
Q gi|254780662|r 88 SIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQ 167 (1576)
Q Consensus 88 tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~~ 167 (1576)
.||.++..|.|=+|-.|+..|..+|.+|.-+--.++ +| .--..|.++++.. .....+|+++
T Consensus 2 aVITviG~Dr~GIVa~vt~~Lae~~iNI~DisQti~------~g------------~F~M~m~vd~~~~-~~~~~~l~~~ 62 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM------DG------------YFTMIMIVDISES-NLDFAELQEE 62 (88)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEE------CC------------EEEEEEEEEECCC-CCCHHHHHHH
T ss_conf 699997799887899999999986998895350267------57------------7899999994576-7999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780662|r 168 LIFIIEQ 174 (1576)
Q Consensus 168 L~~VL~d 174 (1576)
|...-++
T Consensus 63 L~~~~~~ 69 (88)
T cd04872 63 LEELGKE 69 (88)
T ss_pred HHHHHHH
T ss_conf 9999987
No 83
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=39.88 E-value=16 Score=12.98 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=5.6
Q ss_pred CCEEEEECCEEE
Q ss_conf 957972154466
Q gi|254780662|r 564 GFTVISEDTFEI 575 (1576)
Q Consensus 564 G~~v~~e~~y~i 575 (1576)
+-+|||-...-+
T Consensus 36 ~a~vIDa~G~vV 47 (541)
T cd01304 36 PAKVIDASGKVV 47 (541)
T ss_pred CCEEEECCCCEE
T ss_conf 885896899888
No 84
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=39.47 E-value=15 Score=13.19 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=12.7
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 57999899999999999999999
Q gi|254780662|r 153 CLKITPEEAIEIKKQLIFIIEQL 175 (1576)
Q Consensus 153 idr~~~e~~~~L~~~L~~VL~dV 175 (1576)
+|..+++.++..++++...+...
T Consensus 114 ~Dlvd~e~l~~v~~ei~~~l~~t 136 (615)
T PRK10512 114 ADRVDEARIDEVRRQVLEVLREY 136 (615)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 65689799999999999998447
No 85
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=39.47 E-value=15 Score=13.20 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999963998999999999999
Q gi|254780662|r 629 HLIMLTDLRVYEISVLRSYAR 649 (1576)
Q Consensus 629 ~Lv~~~~l~~r~v~~lra~~~ 649 (1576)
++...|.-++.|=.+.||..+
T Consensus 191 W~LAlAAYN~GeG~V~rAI~~ 211 (449)
T PRK10783 191 WLLTVAAYNSGEGRVMKAIKA 211 (449)
T ss_pred HHHHHHHHCCCCCHHHHHHHH
T ss_conf 999999964361079999999
No 86
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=39.42 E-value=16 Score=13.01 Aligned_cols=113 Identities=21% Similarity=0.180 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----CCCCCHHCCCCC---CCCCCCCCCCCHHHH-
Q ss_conf 688840288310305389867998177888326899999998808----998501105699---998843101146789-
Q gi|254780662|r 861 FEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAK----FWLDDAFASGGS---MGYDHKKMGITARGA- 932 (1576)
Q Consensus 861 ~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~g----fwlgdAFaSGgs---~GydHK~mGITarGa- 932 (1576)
+..|+...|.+-..+--+.++ +||||.|.- .+.++| ||.|| |=|=.. .=|.+|+--|+..-.
T Consensus 6 il~g~~~~~~~~~~~~~~~~~-~v~aDgGa~--------~l~~~gl~P~~~vGD-fDSv~~e~~~~~~~~~~~~~f~~eK 75 (212)
T COG1564 6 ILNGGILAPTDRLDYLWKFDK-IVAADGGAN--------HLLELGLVPDLAVGD-FDSVSEELLAYYKEKTVTIKFPAEK 75 (212)
T ss_pred EECCCCCCCHHHHHHCCCCCE-EEEECCHHH--------HHHHCCCCCCEEEEC-CCCCCHHHHHHHHHCCCCEECCHHH
T ss_conf 971765578256432045666-999870888--------999849986578724-6456799999986457623468343
Q ss_pred ----HHHHHHHHHHCCCCCCCCCEEEEE-ECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCC
Q ss_conf ----999999999808996548645996-05886332443111276620899973943686777
Q gi|254780662|r 933 ----WETVKRHFREMDIDIQSTPFTVAG-VGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPD 991 (1576)
Q Consensus 933 ----w~~v~rhfrelg~D~q~~~fTvvg-iGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~ 991 (1576)
-|-.-.-..|.|- +.++..| .||=.--.++|-+|+.+- +.+.+.=.++|+.
T Consensus 76 d~TD~elAl~~a~e~g~----d~i~i~Ga~GGR~DH~l~nl~ll~~~----~~~~~~i~l~~~~ 131 (212)
T COG1564 76 DSTDLELALDEALERGA----DEIVILGALGGRLDHALANLFLLLRP----AKSGFKITLISGQ 131 (212)
T ss_pred CCCHHHHHHHHHHHCCC----CEEEEEECCCCHHHHHHHHHHHHHHH----HHCCCEEEEECCC
T ss_conf 54669999999998099----77999815788189999999998754----4206469996378
No 87
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=39.16 E-value=13 Score=13.80 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=30.3
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHH---HHHHHHCCCCCEE
Q ss_conf 7881379899999996689870038978717897089821444217989998709885542888---9998630365304
Q gi|254780662|r 991 DPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPS---EIISAILMASVDL 1067 (1576)
Q Consensus 991 ~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~---eli~~iL~a~vDL 1067 (1576)
|||+...-.-+|-|++-| -+++|||+ + -.|+|+.-+|..-.+||. ++-+.+.+|=+||
T Consensus 99 ~P~~~~a~R~LQELyAaP------l~~eLl~~----------r---i~~vr~aG~i~Av~lsPq~~~~~a~~vv~AG~DL 159 (376)
T TIGR01304 99 DPDQAEATRLLQELYAAP------LKPELLGK----------R---IAEVRDAGVITAVRLSPQNASKLAPVVVEAGADL 159 (376)
T ss_pred CCCHHHHHHHHHHHHHCC------CCHHHHHH----------H---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 884789988889986367------98647899----------9---9999726848999866531678889999717300
Q ss_pred ECCC
Q ss_conf 4338
Q gi|254780662|r 1068 LWFG 1071 (1576)
Q Consensus 1068 lw~g 1071 (1576)
|.-=
T Consensus 160 LvIq 163 (376)
T TIGR01304 160 LVIQ 163 (376)
T ss_pred EEEH
T ss_conf 4200
No 88
>pfam02614 UxaC Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyses the reactions: D-glucuronate <= D-fructuronate and D-galacturonate <= D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.
Probab=38.89 E-value=16 Score=12.86 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=59.5
Q ss_pred HH-HHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89-999973986835331344373244047679998658877079898899889998789999999850078999999
Q gi|254780662|r 1119 AR-VVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAIS 1195 (1576)
Q Consensus 1119 ~R-ie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~~mtdeV~~lVL~~n~~Q~~~ls 1195 (1576)
.| -.|...|+++---.++..--..+|+.|+ .-+++.++..+.+|.+|-.++-..|--+.+++-.+++.-+.+-++
T Consensus 219 ~R~~~F~~~Gcr~SDHGl~~~~~~~~s~~ea--~~if~ka~~G~~lt~~E~~~f~~~~l~~la~~y~e~gwvmQlH~G 294 (465)
T pfam02614 219 KRIDFFHEHGCRSSDHGLDTVVYAEASEEEA--DAIFDKALAGETLTPEEIEKFKTATLYELARLYAERGWVMQLHIG 294 (465)
T ss_pred HHHHHHHHCCCEEECCCCCCCCCCCCCHHHH--HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999868976326898666788999999--999999975999899999999999999999999877972233255
No 89
>KOG0730 consensus
Probab=38.62 E-value=17 Score=12.83 Aligned_cols=204 Identities=20% Similarity=0.269 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHCCCC--CCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 678999999999980899--654864599605886332443111276620899973943686777881379899999996
Q gi|254780662|r 929 ARGAWETVKRHFREMDID--IQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576)
Q Consensus 929 arGaw~~v~rhfrelg~D--~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576)
+-|--+-++.|+..|+.+ .+-+..-+.-.|=-..|..++ ++. ..+-+.-+++++|-.---+ -.-.+.|..+.+
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l---~~e-a~~~~~r~~~~~~~~A~~~-i~psa~Re~~ve 427 (693)
T KOG0730 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAAL---CRE-ASLQATRRTLEIFQEALMG-IRPSALREILVE 427 (693)
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHC-CCCHHHHHEECC
T ss_conf 33588999999861688725568999987346147879999---999-8777665557778998706-870223320024
Q ss_pred CCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC--CCCCCCCHHHHHHHHCCCCCEEECCCCCCC----EECC-
Q ss_conf 689870038978717897089821444217989998709--885542888999863036530443387421----1126-
Q gi|254780662|r 1007 SPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIG--ISKQIATPSEIISAILMASVDLLWFGGIGT----YIRA- 1079 (1576)
Q Consensus 1007 lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~--~~~~~~~p~eli~~iL~a~vDLlw~gGiGT----Yvka- 1079 (1576)
.|.-+|+|+- | -.++|.-+. +.-....|+.+.+.-+..|--.|+.|.-|+ -.||
T Consensus 428 ~p~v~W~dIG-------G------------lE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkal 488 (693)
T KOG0730 428 MPNVSWDDIG-------G------------LEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKAL 488 (693)
T ss_pred CCCCCHHHCC-------C------------HHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 7887822045-------7------------89999999999861665659998725788754777789986247899998
Q ss_pred CCCCCCCCCCCCCCCEECCCCCEEEEEEEECCC-CC-CCHHHHHHHHHCCCEEECCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 898620015210000002588304689985551-03-0767899999739868353313443732-44047679998658
Q gi|254780662|r 1080 PRENNADIGDKGNNILRVTADKVRAKVIGEGAN-LG-LTQQARVVYSLNGGRINSDAIDNSGGVN-CSDLEVNIKIALAS 1156 (1576)
Q Consensus 1080 ~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~N-Lg-~Tq~~Rie~a~~Gg~intDaidNsaGV~-~Sd~EVniKIll~~ 1156 (1576)
++|++. .++-|-|.||-.|++||+-- ++ +=++|| +.+-..|+-|-||--+|-- .|+++|--.+
T Consensus 489 Ane~~~-------nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR---~~aP~IiFfDEiDsi~~~R~g~~~~v~~RV---- 554 (693)
T KOG0730 489 ANEAGM-------NFLSVKGPELFSKYVGESERAIREVFRKAR---QVAPCIIFFDEIDALAGSRGGSSSGVTDRV---- 554 (693)
T ss_pred HHHHCC-------CEEECCCHHHHHHHCCCHHHHHHHHHHHHH---HCCCEEEEHHHHHHHHHCCCCCCCCHHHHH----
T ss_conf 646358-------726415789987751825899999999986---269837744666666630478755148999----
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8770798988998899987899999
Q gi|254780662|r 1157 AMRDGRLTLENRNKLLSSMTSEVVE 1181 (1576)
Q Consensus 1157 ~~~~g~lt~~~Rn~lL~~mtdeV~~ 1181 (1576)
=|+||.+|-.-.+.
T Consensus 555 -----------lsqLLtEmDG~e~~ 568 (693)
T KOG0730 555 -----------LSQLLTEMDGLEAL 568 (693)
T ss_pred -----------HHHHHHHCCCCCCC
T ss_conf -----------99999870041014
No 90
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=38.16 E-value=17 Score=12.77 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=14.3
Q ss_pred ECCCCCEE-EEEEEEECHHCCHHHHHHHHHHHH
Q ss_conf 46668989-999982110289999999999999
Q gi|254780662|r 399 IDRFNHFF-SSLIYIPREYFDSFVREKIGNYLS 430 (1576)
Q Consensus 399 ~D~fgRFv-S~LVyvPRDRYsT~vR~rIq~~L~ 430 (1576)
.|..|+-+ ++=|-.|..|++.+-...+...|.
T Consensus 223 ~d~~G~~vaAisv~gp~~r~~~~~~~~~~~~l~ 255 (271)
T PRK10163 223 YDDVGSVVAAISISGPSSRLTEDRFVSQGELVR 255 (271)
T ss_pred ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHH
T ss_conf 889999999999976856579989999999999
No 91
>KOG3839 consensus
Probab=38.10 E-value=17 Score=12.77 Aligned_cols=40 Identities=28% Similarity=0.472 Sum_probs=26.7
Q ss_pred EECCCCCCCCCCHHHC--CCC-------CEEEEEECCCEEEECCCCCCC
Q ss_conf 6058863324431112--766-------208999739436867778813
Q gi|254780662|r 956 GVGDMSGDVFGNGMLL--SRK-------IQLVAAFDHSDIFIDPDPNSE 995 (1576)
Q Consensus 956 giGdmsGDVfGNgmLl--s~~-------i~lvaafdh~hif~DP~PD~~ 995 (1576)
-+-|-+|+.||-||.+ |+. .---+-|.+..||||+.||-.
T Consensus 118 kv~~~s~~lfgdG~Aiw~t~Er~q~GPvFG~~dkF~GL~vfidtY~n~~ 166 (351)
T KOG3839 118 KVHGQSKNLFGDGMAIWYTKERAQPGPVFGSKDKFTGLAVFIDTYGNHN 166 (351)
T ss_pred EEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCC
T ss_conf 9805777612550578752010567897787433015899985467767
No 92
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.11 E-value=17 Score=12.65 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=47.3
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHH-HHHCCCCEEEEECC-EEEEEECCCCCEEECCCC-CCCCCCEEEEEEEECCCC
Q ss_conf 899886579999478774389999999-99779912799846-489998899737423677-887663369999957999
Q gi|254780662|r 81 NPSGISISIITVIVDNIPFLYQSIIGE-IVARCRNLTMAVHP-VFTKDKNCDWQLYSPESC-GIAQKQISLIQIHCLKIT 157 (1576)
Q Consensus 81 ~gw~s~~tvi~iv~dD~PfLvDSv~~~-l~~~~~~i~~~~HP-vl~V~RD~~G~L~~v~~~-~~~~~~ES~I~Ieidr~~ 157 (1576)
++.+...++--...++.|+|+.|-.-- ......+.-+++.| ++.++-...+.|.=+... .....+||+.++-++.+.
T Consensus 39 ~~~~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~~lP~drEslf~lnv~eIP 118 (235)
T COG3121 39 PAGDKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGNKLPADRESLFRLNVDEIP 118 (235)
T ss_pred ECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEECCCEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEEEECC
T ss_conf 28986169998748998689999971688877566987867985997899856799998689999984158999936779
Q ss_pred HH
Q ss_conf 89
Q gi|254780662|r 158 PE 159 (1576)
Q Consensus 158 ~e 159 (1576)
+.
T Consensus 119 p~ 120 (235)
T COG3121 119 PK 120 (235)
T ss_pred CC
T ss_conf 99
No 93
>pfam04735 Baculo_helicase Baculovirus DNA helicase.
Probab=37.11 E-value=17 Score=12.65 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=12.3
Q ss_pred HHHCCCCCEEECCCCCCCEEC
Q ss_conf 863036530443387421112
Q gi|254780662|r 1058 SAILMASVDLLWFGGIGTYIR 1078 (1576)
Q Consensus 1058 ~~iL~a~vDLlw~gGiGTYvk 1078 (1576)
+-|-...+++.+||.+=++||
T Consensus 462 kKIk~~~~~~VFNGkhY~~vK 482 (1173)
T pfam04735 462 KKIKVGNVDYVFNGKHYEIVK 482 (1173)
T ss_pred EEEEECCEEEEECCCEEEEEC
T ss_conf 999998679997385888851
No 94
>PRK07830 consensus
Probab=37.00 E-value=17 Score=12.63 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHC
Q ss_conf 5011056999-98843101146789999999999808996548645996058863324431112
Q gi|254780662|r 909 DDAFASGGSM-GYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLL 971 (1576)
Q Consensus 909 gdAFaSGgs~-GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLl 971 (1576)
|++|.+|+.. ...+...+-.....+....+.++.+- .+.+.-|.-+.|-++|-|+-+
T Consensus 65 g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~kPvIaav~G~a~GgG~~l 122 (267)
T PRK07830 65 GRGFSSGAGISADDVWGGGEPPTAVVDEANRAVRAIV------ALPVPVVAVVQGPAAGVGVSL 122 (267)
T ss_pred CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH------HCCCCEEEEECCEEEEHHHHH
T ss_conf 9877178870555402665658999999999999999------689989999778377025799
No 95
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.97 E-value=17 Score=12.63 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=46.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCH-HHHHHHHHH
Q ss_conf 9999478774389999999997799127998464899988997374236778876633699999579998-999999999
Q gi|254780662|r 89 IITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITP-EEAIEIKKQ 167 (1576)
Q Consensus 89 vi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~-e~~~~L~~~ 167 (1576)
|+.+.++|.|=+|-.|+..|.++|..|.-.-+=. |. ...-=+|.++++..+. ...++|+++
T Consensus 1 iL~i~CpD~~GIVa~Vs~~l~~~g~nI~e~~q~~-----D~-------------~~~~FFmR~~f~~~~~~~~~~~l~~~ 62 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV-----DP-------------DSGRFFMRVEFELEGFDLSREALEAA 62 (74)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE-----CC-------------CCCEEEEEEEEECCCCCCCHHHHHHH
T ss_conf 9899789988819999999998799886623773-----69-------------89848999999758988799999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780662|r 168 LIFIIEQ 174 (1576)
Q Consensus 168 L~~VL~d 174 (1576)
+..+...
T Consensus 63 f~~ia~~ 69 (74)
T cd04875 63 FAPVAAE 69 (74)
T ss_pred HHHHHHH
T ss_conf 9999997
No 96
>TIGR00014 arsC arsenate reductase; InterPro: IPR006659 This entry describes a distinct clade, including ArsC itself, of the broader family of ArsC and related proteins. This clade is almost completely restricted to the proteobacteria. An anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773 . When expressed in Escherichia coli this ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. The pump is composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate. ; GO: 0008794 arsenate reductase (glutaredoxin) activity, 0006118 electron transport.
Probab=36.81 E-value=7.5 Score=15.87 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHHCCCEE
Q ss_conf 766989888898569579
Q gi|254780662|r 550 PFSLSKRVPLLENLGFTV 567 (1576)
Q Consensus 550 ~~~Ls~~~p~l~~~G~~v 567 (1576)
|.+.|+.=-++..+|+.+
T Consensus 35 pp~~seL~~~~~~LG~~~ 52 (114)
T TIGR00014 35 PPTKSELKALLAKLGISS 52 (114)
T ss_pred CCCHHHHHHHHHHCCCCH
T ss_conf 748688999998708970
No 97
>pfam05397 Med15_fungi Mediator complex subunit 15. GAL11 or MED15 is one of the up to 32 or subunits of the Mediator complex which is found from fungi to humans. The Mediator complex interacts with RNA polymerase II and other general transcription factors to form the RNA polymerase II holoenzyme, thereby affecting transcription through targetting of activators and repressors. This family is found in fungi and the small metazoan starlet anemone.
Probab=36.71 E-value=18 Score=12.60 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHH-------HHHHHHHHHHCCEEE
Q ss_conf 77999999999999985406775311488-------999999997289188
Q gi|254780662|r 180 QDSREMLASLEKMQKSFCHLTGIKEYAVE-------ALTFLNWLNEDNFQF 223 (1576)
Q Consensus 180 ~Dw~aM~~rl~~l~~~L~~~~~~~ee~~E-------a~aFL~WL~ddhFtF 223 (1576)
.+-..|.+++..++..+...+..++...+ ..+=++|+..|+||.
T Consensus 42 ~~~~~m~~rvdsli~~f~~lt~ne~~~k~LlqMr~~~k~q~e~~~~~~f~i 92 (115)
T pfam05397 42 QKNQQMFSRVDSLIPQFYKLTGNEENTKRLLQMRIMTKEQLEWLLNGIFTV 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999999999961885889999999999999986240571555
No 98
>KOG0285 consensus
Probab=36.58 E-value=9.7 Score=14.89 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=8.2
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 867998177888326899
Q gi|254780662|r 879 DPYFVVAADKGTATFSDT 896 (1576)
Q Consensus 879 d~ylvvaaDkgTa~fsD~ 896 (1576)
|-|+|+|+|+|+--|+||
T Consensus 371 D~v~~~G~dng~~~fwdw 388 (460)
T KOG0285 371 DGVLVSGGDNGSIMFWDW 388 (460)
T ss_pred CCEEEECCCCEEEEEEEC
T ss_conf 864997478637998853
No 99
>KOG2623 consensus
Probab=36.32 E-value=18 Score=12.55 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCE
Q ss_conf 777881379899999996689870038978717897089821444217989998709885542888999863036530
Q gi|254780662|r 989 DPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVD 1066 (1576)
Q Consensus 989 DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vD 1066 (1576)
-|+ |+||+|-.-- -.+.||=.-+++.-|+-- .+--|+| --+..++.+||+.+.....+
T Consensus 200 s~~---GlSftEFtYQ------~lQAYDfy~L~~~~g~~~----QlGGsDQ-------wGNitaG~dlI~ki~~~~~~ 257 (467)
T KOG2623 200 SPN---GLSFTEFTYQ------LLQAYDFYHLYENYGCRF----QLGGSDQ-------WGNITAGTDLIRKIMPIQAF 257 (467)
T ss_pred CCC---CCCHHHHHHH------HHHHHHHHHHHHHCCEEE----EECCCCC-------CCCCCHHHHHHHHHCCCCCC
T ss_conf 878---8749999999------999876999998648569----8516432-------36622078999985203134
No 100
>KOG1367 consensus
Probab=36.22 E-value=18 Score=12.54 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCCCCCCHHHH
Q ss_conf 999999999769875643569
Q gi|254780662|r 609 ALVEAFKYIFHERVDNDSFNH 629 (1576)
Q Consensus 609 ~~~~~~~~~~~~~~e~D~~n~ 629 (1576)
.|...|... ..-.-||.|-.
T Consensus 147 ~fr~~l~~l-~DvyVnDAFGt 166 (416)
T KOG1367 147 EFRASLASL-GDVYVNDAFGT 166 (416)
T ss_pred HHHHHHHHH-CCEEEECCCCC
T ss_conf 999998741-15786400020
No 101
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit; InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation . Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) . ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process.
Probab=36.09 E-value=18 Score=12.52 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCH----
Q ss_conf 0065179999999999984898824305999899999997789998289999999999999999845--7999847----
Q gi|254780662|r 1200 KGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLD--STLIDDP---- 1273 (1576)
Q Consensus 1200 ~~~~~~~~~~rli~~Le~~g~Ldr~~E~LP~~~~l~~r~~~g~gltrpelavLlay~K~~l~~~l~~--s~l~dd~---- 1273 (1576)
-+...|++|..++++|.+.|..| |||+-=.---|.++.. -++.-|++...+ |.|--=|
T Consensus 66 agv~lLdehielL~~L~~eGgAD----lLp~tIDsYTR~N~Yd------------~A~~gl~~S~~~~~S~LNGfP~vNy 129 (481)
T TIGR01503 66 AGVALLDEHIELLKTLQEEGGAD----LLPSTIDSYTRENRYD------------EAAVGLKESIKAGKSLLNGFPLVNY 129 (481)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC----CCCHHHHHHCCCCCHH------------HHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 78620689999988876523754----2203553212477437------------8999998665407722157861345
Q ss_pred --HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-H-HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf --8999988839989998889997708317999999999998-8-67352389998887099999999999999998193
Q gi|254780662|r 1274 --FFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEI-I-NKGGSCFVVSLAKETGSSTEDVIRSAVIAYAGYEL 1349 (1576)
Q Consensus 1274 --~~~~~l~~yfP~~l~~~f~~~i~~H~LrREIIaT~laN~i-V-Nr~G~tF~~rl~e~tGa~~~~i~rAy~~a~~if~l 1349 (1576)
-.+|.+.+-.-.|||-|++. +.=||=-||+ ++.-- = .=+|||| .+==....+..+-.+-|-=+..+.|+
T Consensus 130 Gv~~cR~v~~~v~~PlQirHGt--PDARLLaev~---lasGF~sfeGGGIsY--NiPY~k~~~Le~sl~~WqYvDRL~G~ 202 (481)
T TIGR01503 130 GVKGCRKVVEDVEVPLQIRHGT--PDARLLAEVA---LASGFTSFEGGGISY--NIPYAKSVTLEKSLEDWQYVDRLVGI 202 (481)
T ss_pred HHHHHHHHHHHHCCCEEEECCC--CCHHHHHHHH---HHCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHCCCEEECCCC
T ss_conf 4799999999717982763288--5278999999---825851205878210--57765322388866312400001135
Q ss_pred HH-----HHHHHHH-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 78-----9999986-0-7858989999999999999999999998518----8778989999999999999998725735
Q gi|254780662|r 1350 ES-----LWQEVDK-L-DNQISGELQNKIYEEIRLIFINLTRLLIKNG----KFIGDIGNAVKRLVTAFHKLNSLLQEKI 1418 (1576)
Q Consensus 1350 ~~-----l~~~I~a-L-d~~v~a~~q~~l~~~~~~ll~r~trW~lr~~----~~~~~i~~~i~~~~~~v~~l~~~l~~~l 1418 (1576)
-+ +.+++.. | .+=||.......-. ++.||- .--=++|- .+-.++..-|+ ++..|.....++|
T Consensus 203 YeE~Gv~INREpFgPLTgTLvPP~iS~si~i-~E~LLA--~eQGVk~itvGygq~Gnl~QDvA----al~aL~e~~~eYL 275 (481)
T TIGR01503 203 YEERGVKINREPFGPLTGTLVPPSISNSIQI-IEGLLA--AEQGVKNITVGYGQVGNLTQDVA----ALRALKELIQEYL 275 (481)
T ss_pred EECCCEEECCCCCCCCCCCCCCHHHHHHHHH-HHHHHH--HHCCCEEEEEEEECCCCHHHHHH----HHHHHHHHHHHHH
T ss_conf 1117604733578766422350678999999-999988--76492178850110043488999----9999999998640
Q ss_pred CHHHHHHH--HHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 98999999--9999999976999889999843225566400999998809998999999999997608689999987288
Q gi|254780662|r 1419 PVEWLERF--NNWVTNLTNKGFPPDLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNVV 1496 (1576)
Q Consensus 1419 ~~~~~~~~--~~~~~~l~~~Gvp~~LA~~va~l~~l~~~ldIv~vA~~~~~~~~~va~~yf~l~~~l~l~~l~~~i~~l~ 1496 (1576)
....-.-+ ..-..+|+ .|.|++=++..+...+....-..+.....--+.+.+...+=.
T Consensus 276 ~~ygy~D~~vsTVfhQWm-GGFP~dE~kAf~vIs~ataiA~l~~~tkvivK~p~Ea~g~pt------------------- 335 (481)
T TIGR01503 276 DTYGYKDVEVSTVFHQWM-GGFPEDESKAFGVISLATAIAALSGATKVIVKSPHEAVGIPT------------------- 335 (481)
T ss_pred HHCCCCCEEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCH-------------------
T ss_conf 201832116875664277-996256788877899999999873786488607221106886-------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 788789999999999999999999999961288888--58999----99999999999998827898744999999
Q gi|254780662|r 1497 VDDHYENLALSAGLDWMYSARREMIVKAITTGSSVA--TIMQN----EKWKEVKDQVFDILSVEKEVTVAHITVAT 1566 (1576)
Q Consensus 1497 ~~~~W~~lAr~al~ddl~~~~r~lt~~vl~~~~~~~--~~~~~----~~w~~~~~~~l~~l~~~~~~dla~lsVa~ 1566 (1576)
-++-. +--.+|..+|....+.. ....+ +.-...-+++|+.+-+.+.=|+|+-+|-+
T Consensus 336 ---------~~~n~-----~gL~~t~~~L~m~~~Q~~~~~~~v~~E~~~Ik~e~~~il~kvFe~G~GDla~gtv~A 397 (481)
T TIGR01503 336 ---------AEANI-----AGLKATKQVLNMLNEQKIPLSEEVELEKELIKKEVRSILDKVFELGDGDLARGTVKA 397 (481)
T ss_pred ---------HHHHH-----HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf ---------89999-----999999999986436857874666778999999999999998611787067788887
No 102
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.82 E-value=18 Score=12.49 Aligned_cols=64 Identities=11% Similarity=-0.082 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 89998863199789744998999999999999984058-98871787247655589988657999
Q gi|254780662|r 28 FSASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWD-HSSACCIDIREVEGINPSGISISIIT 91 (1576)
Q Consensus 28 ~fa~~~f~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~-~~~~~~~v~~p~~~~~gw~s~~tvi~ 91 (1576)
-....|.++.+...+..--..-.-......|+...--. .+-+.+.|=---+.+--..|...++-
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~d~~L~~lw~~~g~~~~~~~aLvAVGGyGRgEL~P~SDiDlL~ 90 (867)
T COG2844 26 GLLGAFDSGRSVNVLIELRTDLVDQLLIRLWQEIGFADASGLALVAVGGYGRGELHPLSDIDLLL 90 (867)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 32231024654345999999999999999999709555556579984465655667776531788
No 103
>PRK12370 invasion protein regulator; Provisional
Probab=35.03 E-value=19 Score=12.40 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=6.2
Q ss_pred CCCEEEEEEEEC
Q ss_conf 883046899855
Q gi|254780662|r 1099 ADKVRAKVIGEG 1110 (1576)
Q Consensus 1099 g~~lr~kvi~EG 1110 (1576)
|.+++++++-||
T Consensus 177 ~reLgv~Y~L~G 188 (553)
T PRK12370 177 MDQLRPDYYISG 188 (553)
T ss_pred HHHHCCCEEEEE
T ss_conf 998488769754
No 104
>TIGR02434 CobF precorrin-6A synthase (deacetylating); InterPro: IPR012797 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobF precorrin-6A synthase (2.1.1.152 from EC), a pathway-specific enzyme in the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, the extruded acyl group is then removed in the subsequent step, which also sees a methyl group added at C-1 in a reaction catalysed by CobF. The product of this reaction is precorrin-6A, which is subsequently reduced by an NADH-dependent reductase to precorrin-6B . This entry identifies CobF in high GC Gram-positive, alphaproteobacteria and pseudomonas-related species..
Probab=34.83 E-value=12 Score=14.09 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99997799999999
Q gi|254780662|r 176 KLVSQDSREMLASL 189 (1576)
Q Consensus 176 r~aV~Dw~aM~~rl 189 (1576)
+.+|+||++-++..
T Consensus 82 ~~~V~~WH~~rA~~ 95 (259)
T TIGR02434 82 RAAVDDWHAQRADI 95 (259)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 77899999999999
No 105
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.81 E-value=19 Score=12.37 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=42.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7999974798766989888898569579721544667658887317999981430677666897888999999999
Q gi|254780662|r 540 VQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFK 615 (1576)
Q Consensus 540 ~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~ 615 (1576)
+++.+...+.|=.|+++--+|..+|+.+..- +|...++ -....|+++...+..++.. ..+.+++++.
T Consensus 2 ~~lEv~~~DRpGLL~~itr~l~e~gL~I~~A---~IsT~Ge-----ra~DvFYVtD~~G~~idp~-~~e~ir~~lg 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRA---EISTQGD-----MAVNVFYVTDANGNPVDPK-TIEAVRQEIG 68 (72)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEE---EEEECCC-----EEEEEEEEECCCCCCCCHH-HHHHHHHHHH
T ss_conf 3799986996868999999999879158899---9960498-----8989999989998998999-9999999986
No 106
>pfam11181 YflT Heat induced stress protein YflT. YflT is a heat induced protein.
Probab=34.79 E-value=19 Score=12.36 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8986799817788832689999999880899850110569999884310114678999999999980
Q gi|254780662|r 877 GNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREM 943 (1576)
Q Consensus 877 ~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrel 943 (1576)
..+-..|++-|+.. .+++++. .|+..+|+...|.|.+++..|+.-
T Consensus 25 ~~~~IyV~a~d~dr--t~~l~~~--------------------t~~~~~~~~e~g~~~~v~n~F~~~ 69 (103)
T pfam11181 25 SEDDIYVLAHDKDR--TERLADN--------------------TDTNTIGAKEQGLGDSVMNTFRKK 69 (103)
T ss_pred CCCCEEEEECCCCH--HHHHHHC--------------------CCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 84567999638414--7777603--------------------787634554475899999986557
No 107
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=34.58 E-value=13 Score=13.68 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=33.7
Q ss_pred CCEEEEEEEECCCCC-----------CCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 830468998555103-----------0767899999739868353313443732440476
Q gi|254780662|r 1100 DKVRAKVIGEGANLG-----------LTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148 (1576)
Q Consensus 1100 ~~lr~kvi~EG~NLg-----------~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EV 1148 (1576)
+++ ||-+||||||+ +|.-||+++=. -+++|.=|||.++.=|
T Consensus 514 K~V-ckaLg~~A~~~~~iPPVL~fG~C~d~gR~~~l~-------~alAe~LGVD~P~LP~ 565 (647)
T TIGR01702 514 KEV-CKALGEAANLEIGIPPVLNFGSCVDIGRAEALA-------TALAEKLGVDVPQLPL 565 (647)
T ss_pred HHH-HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-------HHHHHHCCCCCCCCCE
T ss_conf 789-973123146788998736663300089999999-------9999744889775752
No 108
>PTZ00316 Profilin; Provisional
Probab=34.51 E-value=19 Score=12.33 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=14.1
Q ss_pred CCCCC-CHHHCCC------------CCEEEEECC
Q ss_conf 70038-9787178------------970898214
Q gi|254780662|r 1011 SWQDF-DRKVLSK------------GGMIISRKE 1031 (1576)
Q Consensus 1011 sw~dy-d~~liS~------------gGgv~~r~~ 1031 (1576)
||+.| |..|+.. +|.||.-|+
T Consensus 2 SWQaYVD~~LvgsG~v~kAAI~g~~dGsvWA~S~ 35 (150)
T PTZ00316 2 SWQAYVDDSLIGSGNMHSAAIVGLADGSYWAYGG 35 (150)
T ss_pred CHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECC
T ss_conf 7889777766047980136999668997656579
No 109
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=34.49 E-value=19 Score=12.33 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=16.7
Q ss_pred CCEEEEEEEECCCCCCHHHHHHH-----HHHCCCEEEEE
Q ss_conf 87079999747987669898888-----98569579721
Q gi|254780662|r 537 DGKVQIKIFHARGPFSLSKRVPL-----LENLGFTVISE 570 (1576)
Q Consensus 537 ~~~~~lk~~~~~~~~~Ls~~~p~-----l~~~G~~v~~e 570 (1576)
.....++.+..+. + =-+.+|+ |.|=-|.||-+
T Consensus 41 ktPhY~n~~g~h~-L-HGRA~P~A~G~KlANP~L~Viv~ 77 (302)
T TIGR02177 41 KTPHYVNVNGFHG-L-HGRALPVATGIKLANPKLKVIVV 77 (302)
T ss_pred CCCCCCCCCCCCC-C-CCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 4773001366452-3-35631011012010898468986
No 110
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=34.20 E-value=19 Score=12.29 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC----CCCCCCCHHHCCCCCEEEEEE
Q ss_conf 431011467899999999998089965486459960588----633244311127662089997
Q gi|254780662|r 922 HKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM----SGDVFGNGMLLSRKIQLVAAF 981 (1576)
Q Consensus 922 HK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdm----sGDVfGNgmLls~~i~lvaaf 981 (1576)
-+++||+|..--|-.......++++...+++|++---|= +-|-|- -|.+++.++.-+
T Consensus 13 ~~kkGv~A~sL~eL~~K~~~~L~i~~~~~~~~lvLeeDGT~VddEdYF~---tLp~nT~lm~L~ 73 (80)
T cd06536 13 QKQHGVAASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFL---CLPPNTKFVLLA 73 (80)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCHHHHH---HCCCCCEEEEEC
T ss_conf 7057788499999999999983889887734999958994986488985---188998999988
No 111
>pfam02556 SecB Preprotein translocase subunit SecB. This family consists of preprotein translocase subunit SecB. SecB is required for the normal export of envelope proteins out of the cell cytoplasm.
Probab=34.14 E-value=19 Score=12.28 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=29.9
Q ss_pred CEEEEEEEEEEECHHH-----------HCCCHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 8877878852100476-----------26885546208999999999748898
Q gi|254780662|r 308 NLIGELHVVGFFTRLV-----------YSQRASKIPLLREKIVKVQNLLNFHP 349 (1576)
Q Consensus 308 ~viGE~RFlGLFTSsA-----------Y~~sv~~IPiLRrKV~~VL~~sGf~p 349 (1576)
..+-|.-..|+|+=.- ...+-.=-|.+|+-+..+.+.+||+|
T Consensus 75 ~f~~El~yagif~i~~~~~~~l~~il~i~~P~~lFP~~R~ii~~l~~~gGFpp 127 (147)
T pfam02556 75 AFLVEVKQAGIFTIRNVPEEQLHPFLGIECPNILFPYAREIISDLTRRGGFPP 127 (147)
T ss_pred EEEEEEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999878999997689989998788650557652789999999997169997
No 112
>pfam04571 Lipin_N lipin, N-terminal conserved region. Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. The conserved region is found at the N-terminus of the member proteins.
Probab=33.91 E-value=17 Score=12.69 Aligned_cols=10 Identities=0% Similarity=-0.220 Sum_probs=4.4
Q ss_pred CEEEEEEEEC
Q ss_conf 3369999957
Q gi|254780662|r 145 QISLIQIHCL 154 (1576)
Q Consensus 145 ~ES~I~Ieid 154 (1576)
-|.+...|++
T Consensus 81 GEAfFv~e~~ 90 (111)
T pfam04571 81 GEAFFVEETE 90 (111)
T ss_pred CEEEEEEECC
T ss_conf 4399999704
No 113
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=33.81 E-value=19 Score=12.24 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=33.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEE
Q ss_conf 5799994787743899999999977991279984648
Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVF 123 (1576)
Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl 123 (1576)
..+|.|+..|.|=+|--+...|.++|.+|.-+--.++
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm 39 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM 39 (90)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHHHHH
T ss_conf 2899997588773349999999976981887779999
No 114
>PRK13760 putative RNA-associated protein; Provisional
Probab=33.33 E-value=20 Score=12.18 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 440476799986588770798--98899889998789999999850078
Q gi|254780662|r 1143 CSDLEVNIKIALASAMRDGRL--TLENRNKLLSSMTSEVVELVLRNNYL 1189 (1576)
Q Consensus 1143 ~Sd~EVniKIll~~~~~~g~l--t~~~Rn~lL~~mtdeV~~lVL~~n~~ 1189 (1576)
|+|.+--+++.| ..|++ |.+||.+.++++..+|...+-+++..
T Consensus 69 T~d~~~I~~~IL----~kGeiQlt~~eR~~~~e~k~k~Ii~~Ia~~~Vd 113 (233)
T PRK13760 69 TTDPLEIAEIII----KKGEIQLTAEQRREMIEEKKRQIINLIARNAID 113 (233)
T ss_pred CCCHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 998999999999----618746689999999999999999999985428
No 115
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=33.12 E-value=7.6 Score=15.85 Aligned_cols=67 Identities=15% Similarity=0.351 Sum_probs=44.5
Q ss_pred CCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHC--CCCCCCCCCHHHCCCCCEEEEECCCCC
Q ss_conf 63324431112766208999739436867778813798999999966--898700389787178970898214442
Q gi|254780662|r 961 SGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDS--PSSSWQDFDRKVLSKGGMIISRKEKAV 1034 (1576)
Q Consensus 961 sGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~l--prssw~dyd~~liS~gGgv~~r~~k~i 1034 (1576)
-||+-..-||+.++-|+.+..|=..+-+. ||+.+|+=....|.- -++-..-|.. +||-||+|-...|
T Consensus 189 HGDL~~~hiLvd~~~rvtGVIDW~da~VG---DPA~Dfa~l~~~~g~~~l~~~l~~Y~~----agg~~w~~~~~h~ 257 (276)
T cd05152 189 HGDLHPGHILIDEDARVTGLIDWTEAKVG---DPARDFVLHYRIFGEAGLERLIDAYEA----AGGRVWPRMKEHI 257 (276)
T ss_pred ECCCCCCCEEECCCCCEEEEECCCCCCCC---CHHHHHHHHHHHCCHHHHHHHHHHHHH----CCCCCCHHHHHHH
T ss_conf 35755770798489858998443014778---848999999987288999999999997----5897884599999
No 116
>KOG4585 consensus
Probab=32.96 E-value=20 Score=12.14 Aligned_cols=34 Identities=32% Similarity=0.299 Sum_probs=22.4
Q ss_pred EEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCC
Q ss_conf 9605886332443111276620899973943686777
Q gi|254780662|r 955 AGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPD 991 (1576)
Q Consensus 955 vgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~ 991 (1576)
+.++..++++|+|+ ..|.+ +.|++|+-++|++=.
T Consensus 118 ~~~~~~~~~~~~n~-~~~~N--vlav~n~d~~f~~v~ 151 (326)
T KOG4585 118 IRVPPKSGSVYFNK-EQSKN--LLAVCNFDMRFIYVD 151 (326)
T ss_pred EECCCCCCCCCCCC-CCCHH--HHHEECCCCEEEEEE
T ss_conf 11376556541011-00211--341235786489998
No 117
>PRK04351 hypothetical protein; Provisional
Probab=32.91 E-value=20 Score=12.13 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=39.8
Q ss_pred HHHHHHH--------HHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCC-CCHHHHHHHHC
Q ss_conf 8999999--------9668987003897871789708982144421798999870988554-28889998630
Q gi|254780662|r 998 FDERKRL--------FDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQI-ATPSEIISAIL 1061 (1576)
Q Consensus 998 ~~Er~RL--------f~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~-~~p~eli~~iL 1061 (1576)
=.|+++| |..|=.--+-||..|-+.| |.|--++..|.++|-+-+..|.+.-. +.+-||.+..|
T Consensus 3 ~~eLq~lve~iS~~~F~~pF~H~a~fN~RLrTTG-GRy~l~~h~ie~Npk~l~~~g~~~l~~IIkHELcHYhL 74 (151)
T PRK04351 3 NQELQRLVEEISLEYFGKPFRHKAYFNKRLRTTG-GRYLLKDHHIEFNPKMYEEYGLEELIGIIKHELCHYHL 74 (151)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CEEECCCCCEEECHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999983887522578734434457-65765877446788998666889988788888888899
No 118
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit; InterPro: IPR004532 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (see IPR002319 from INTERPRO). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta. In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the beta subunit. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps (see also IPR004531 from INTERPRO). This family represents the subfamily that includes the beta subunit from bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the N-terminal.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=32.84 E-value=20 Score=12.12 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=6.3
Q ss_pred CEEEEEEEEEEE
Q ss_conf 918810479984
Q gi|254780662|r 220 NFQFMGMRYHPL 231 (1576)
Q Consensus 220 hFtFLGyReY~l 231 (1576)
.|+-|.=.+|.+
T Consensus 308 ~~~~Ld~~e~~L 319 (848)
T TIGR00472 308 SFTTLDGKEREL 319 (848)
T ss_pred EEEECCCEEEEE
T ss_conf 433046534665
No 119
>KOG4207 consensus
Probab=32.73 E-value=11 Score=14.53 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=6.5
Q ss_pred EEEEECHHCCHH
Q ss_conf 998211028999
Q gi|254780662|r 409 LIYIPREYFDSF 420 (1576)
Q Consensus 409 LVyvPRDRYsT~ 420 (1576)
=||+|||+|+-+
T Consensus 42 DVyIPrdr~Tr~ 53 (256)
T KOG4207 42 DVYIPRDRYTRQ 53 (256)
T ss_pred CEECCCCCCCCC
T ss_conf 165466555656
No 120
>KOG4175 consensus
Probab=32.43 E-value=20 Score=12.07 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=11.7
Q ss_pred CEEEEEEEECCCCCCHHHHHHHH---HHCCCEEE
Q ss_conf 70799997479876698988889---85695797
Q gi|254780662|r 538 GKVQIKIFHARGPFSLSKRVPLL---ENLGFTVI 568 (1576)
Q Consensus 538 ~~~~lk~~~~~~~~~Ls~~~p~l---~~~G~~v~ 568 (1576)
+..-|.-|+.-.-..+|+..|+| ++-|..+|
T Consensus 16 nknaLvtfiTaG~P~v~~T~kilkglq~gG~dII 49 (268)
T KOG4175 16 NKNALVTFITAGDPDVSTTAKILKGLQSGGSDII 49 (268)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 8705899872489967889999988752796748
No 121
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.38 E-value=20 Score=12.06 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=36.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEC-CCC-HHHHHHH
Q ss_conf 57999947877438999999999779912799846489998899737423677887663369999957-999-8999999
Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCL-KIT-PEEAIEI 164 (1576)
Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieid-r~~-~e~~~~L 164 (1576)
.|||+|-+.|+|=|+=-+...|....+ .+.|..+.. + |..+.+|.+|.=.-. ++. +.+.+.+
T Consensus 1 YsvV~v~crDRpKLLFD~VCTLtDm~Y---vVfHati~t----~---------g~~a~Qe~yIr~~dG~~~~se~er~r~ 64 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDY---VVFHATIDT----D---------GDDAHQEYYIRHKDGRTLSTEGERQRV 64 (75)
T ss_pred CEEEEEEECCCCCCEEEEEEECCCCEE---EEEEEEEEC----C---------CCCEEEEEEEEECCCCCCCCHHHHHHH
T ss_conf 958999726875200022465346608---999999823----8---------984689998883599806898999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780662|r 165 KKQLIF 170 (1576)
Q Consensus 165 ~~~L~~ 170 (1576)
.+-|+.
T Consensus 65 ~~cLea 70 (75)
T cd04897 65 IKCLEA 70 (75)
T ss_pred HHHHHH
T ss_conf 999999
No 122
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=32.16 E-value=20 Score=12.04 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 2389998887099999999999999998
Q gi|254780662|r 1319 SCFVVSLAKETGSSTEDVIRSAVIAYAG 1346 (1576)
Q Consensus 1319 ~tF~~rl~e~tGa~~~~i~rAy~~a~~i 1346 (1576)
.+|..+|...-|++- +.|.||++|.++
T Consensus 149 lsFf~~m~~~fga~G-dfAqaYViAHEV 175 (295)
T COG2321 149 LSFFDEMKTKFGASG-DFAQAYVIAHEV 175 (295)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHH
T ss_conf 269999999836886-279998988654
No 123
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=32.15 E-value=20 Score=12.04 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHCCCEEEEE
Q ss_conf 6989888898569579721
Q gi|254780662|r 552 SLSKRVPLLENLGFTVISE 570 (1576)
Q Consensus 552 ~Ls~~~p~l~~~G~~v~~e 570 (1576)
.+=.|.|+||.||++|+.-
T Consensus 222 E~W~v~pLleklGi~V~~~ 240 (470)
T TIGR01283 222 EFWLVKPLLEKLGIRVLAT 240 (470)
T ss_pred CCCCCCCHHHHCCCEEEEE
T ss_conf 1110010143389179997
No 124
>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]
Probab=32.02 E-value=20 Score=12.02 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCC-CCHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHH
Q ss_conf 9999999998489-882430599989999999778999828999999999999999984579998478999988839989
Q gi|254780662|r 1208 FAQLMKFLGKEGA-LDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSILLSYFPRQ 1286 (1576)
Q Consensus 1208 ~~rli~~Le~~g~-Ldr~~E~LP~~~~l~~r~~~g~gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l~~yfP~~ 1286 (1576)
.+.+++.||.-|. ++| +|+-+++++-...-+|.+-- - +-.=+|+++||...-.+|||..
T Consensus 66 c~~fLdgle~lgL~~~~----ipd~~~in~~l~~~Tgw~v~---------~-------Vpglvp~~~ff~lLanrrFPva 125 (291)
T COG3186 66 CQEFLDGLEALGLPLSR----IPDFDEINRVLQRETGWQVV---------A-------VPGLVPFDVFFDLLANRRFPVA 125 (291)
T ss_pred HHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHCCCEEE---------E-------CCCCCCHHHHHHHHHHCCCCHH
T ss_conf 69998799972997012----77779999999985096798---------5-------5766880889999850557678
Q ss_pred HHHHHHHH
Q ss_conf 99888999
Q gi|254780662|r 1287 LSELYSED 1294 (1576)
Q Consensus 1287 l~~~f~~~ 1294 (1576)
---|-.++
T Consensus 126 ~~mRt~~e 133 (291)
T COG3186 126 TFMRTPDE 133 (291)
T ss_pred HHHCCHHH
T ss_conf 87448764
No 125
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=31.96 E-value=20 Score=12.01 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88899999999999
Q gi|254780662|r 604 VDRRDALVEAFKYI 617 (1576)
Q Consensus 604 ~~~~~~~~~~~~~~ 617 (1576)
..-.++|..++.++
T Consensus 38 e~E~~rl~~A~~~~ 51 (574)
T COG1080 38 EAEIERLDAALAAA 51 (574)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88999999999999
No 126
>KOG0727 consensus
Probab=31.95 E-value=19 Score=12.30 Aligned_cols=152 Identities=22% Similarity=0.343 Sum_probs=76.7
Q ss_pred EEEEEECCCEEEECCCC-CCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 08999739436867778-81379899999996689870038978717897089821444217989998709885542888
Q gi|254780662|r 976 QLVAAFDHSDIFIDPDP-NSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPS 1054 (1576)
Q Consensus 976 ~lvaafdh~hif~DP~P-D~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~~~~~~~~p~ 1054 (1576)
.-||.--|+...+|--| ++..|.. -.+-=+.|--|+.|- ||--.- -.|+|++..++ ++-.
T Consensus 118 ~svalhrhsnalvdvlppeadssi~-ml~~~ekpdvsy~di-------ggld~q--------kqeireavelp---lt~~ 178 (408)
T KOG0727 118 ASVALHRHSNALVDVLPPEADSSIS-MLGPDEKPDVSYADI-------GGLDVQ--------KQEIREAVELP---LTHA 178 (408)
T ss_pred CCHHHHHCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCC-------CCCHHH--------HHHHHHHHHCC---CHHH
T ss_conf 3002454266300015886666430-138777898641345-------662112--------89999888365---3078
Q ss_pred HHHHHHCC-CCCEEECCCCCCC----EECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf 99986303-6530443387421----112689862001521000000258830468998555103076789999973986
Q gi|254780662|r 1055 EIISAILM-ASVDLLWFGGIGT----YIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGR 1129 (1576)
Q Consensus 1055 eli~~iL~-a~vDLlw~gGiGT----Yvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~ 1129 (1576)
+|.+-|-- .|--.|..|.-|| .+||-.-.. .-.++||+|++.--|+.|||--. +-..=|..-+.+-..
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvvgsefvqkylgegprm-vrdvfrlakenapsi 251 (408)
T KOG0727 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGSEFVQKYLGEGPRM-VRDVFRLAKENAPSI 251 (408)
T ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCC------CHHEEEECCHHHHHHHHCCCCHH-HHHHHHHHHCCCCCE
T ss_conf 89997088998622775799975789999986126------11144630189999985548389-999999876169837
Q ss_pred EECCCCCCCCC-----CCCCCHHHHHHHHH
Q ss_conf 83533134437-----32440476799986
Q gi|254780662|r 1130 INSDAIDNSGG-----VNCSDLEVNIKIAL 1154 (1576)
Q Consensus 1130 intDaidNsaG-----V~~Sd~EVniKIll 1154 (1576)
|+-|-||--|- -..+|.||- .||+
T Consensus 252 ifideidaiatkrfdaqtgadrevq-ril~ 280 (408)
T KOG0727 252 IFIDEIDAIATKRFDAQTGADREVQ-RILI 280 (408)
T ss_pred EEEEHHHHHHHHHCCCCCCCCHHHH-HHHH
T ss_conf 9862245676641244446318999-9999
No 127
>KOG0296 consensus
Probab=31.75 E-value=21 Score=11.98 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=27.6
Q ss_pred EEEEECCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 9999838657998405423304042008857888889998998453287428887532787
Q gi|254780662|r 766 EIFVYGVEVEGVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFY 826 (1576)
Q Consensus 766 eifv~sp~~eGvHlR~g~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~vIvp~GaKGgfv 826 (1576)
..|+-.-.+.|. ++--+++-|+.+|+-- .|+=++++------+.|.-.|++-|-+
T Consensus 118 gtlLATGdmsG~-v~v~~~stg~~~~~~~-----~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296 118 GTLLATGDMSGK-VLVFKVSTGGEQWKLD-----QEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred CEEEEECCCCCC-EEEEECCCCCEEEEEE-----CCCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf 518985677763-8999814684688840-----534734899743565279864688838
No 128
>PRK11190 putative DNA uptake protein; Provisional
Probab=31.64 E-value=21 Score=11.97 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=9.4
Q ss_pred EEEEEECCCEEEECCC
Q ss_conf 0899973943686777
Q gi|254780662|r 976 QLVAAFDHSDIFIDPD 991 (1576)
Q Consensus 976 ~lvaafdh~hif~DP~ 991 (1576)
-.+--|++-.+|+||.
T Consensus 53 D~~~e~~gf~V~VD~~ 68 (192)
T PRK11190 53 DTELKFNGFSAYVDEL 68 (192)
T ss_pred EEEEEECCEEEEECCC
T ss_conf 2899869999998302
No 129
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=31.22 E-value=20 Score=12.13 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7989999999999
Q gi|254780662|r 465 PSQESLEEGVRSI 477 (1576)
Q Consensus 465 vD~~~LE~~i~~~ 477 (1576)
+....||++|+++
T Consensus 64 PT~~~lE~~la~L 76 (398)
T PRK08249 64 PTVQALEAKVKEL 76 (398)
T ss_pred HHHHHHHHHHHHH
T ss_conf 6599999999998
No 130
>LOAD_ACT consensus
Probab=30.94 E-value=21 Score=11.88 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=46.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99994787743899999999977991279984648999889973742367788766336999995799989999999999
Q gi|254780662|r 89 IITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQL 168 (1576)
Q Consensus 89 vi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~~L 168 (1576)
++.+..+|+|=++-.|...+.++|++|..+..-.- . ...-|.|.+.++-.+++...++...+
T Consensus 1 ~l~v~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~-----~-------------~~~~~~i~~~~~~~~~~~~~~i~~~l 62 (76)
T LOAD_ACT 1 ILEVELEDRPGVLARVLGALAERGINIVSIEQSTS-----E-------------KGGLARIVFVVDVEDDEDLEKILKEL 62 (76)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCHHEEEECCC-----C-------------CCCEEEEEEEEECCCHHHHHHHHHHH
T ss_conf 97999957787799999999864989420670356-----8-------------88668899999549979999999998
Q ss_pred HHH
Q ss_conf 999
Q gi|254780662|r 169 IFI 171 (1576)
Q Consensus 169 ~~V 171 (1576)
...
T Consensus 63 ~~~ 65 (76)
T LOAD_ACT 63 LLL 65 (76)
T ss_pred HCC
T ss_conf 457
No 131
>TIGR00576 dut dUTP diphosphatase; InterPro: IPR008181 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase. The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA . The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes . Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process.
Probab=30.77 E-value=5.4 Score=17.15 Aligned_cols=20 Identities=50% Similarity=0.574 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCHHHHHHHHH
Q ss_conf 13443732440476799986
Q gi|254780662|r 1135 IDNSGGVNCSDLEVNIKIAL 1154 (1576)
Q Consensus 1135 idNsaGV~~Sd~EVniKIll 1154 (1576)
|+|++||+=|||==+||+.|
T Consensus 76 i~n~~GvID~DYRGE~kV~L 95 (151)
T TIGR00576 76 IDNSPGVIDADYRGEIKVIL 95 (151)
T ss_pred EECCCCEEECCCCCCEEEEE
T ss_conf 96678178178720268999
No 132
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=30.46 E-value=22 Score=11.82 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=79.5
Q ss_pred CCCCCCCCHHHCCCCCEEEEECCC---CCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCC
Q ss_conf 987003897871789708982144---42179899987098855428889998630365304433874211126898620
Q gi|254780662|r 1009 SSSWQDFDRKVLSKGGMIISRKEK---AVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNA 1085 (1576)
Q Consensus 1009 rssw~dyd~~liS~gGgv~~r~~k---~i~ls~~~~~~l~~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~ 1085 (1576)
.+...|+.+.|+.-|+-|.-.+.+ .||+.. -..|-.+..+.|+|++..|.-.|. -+.+..+.|.|-+.+...
T Consensus 118 a~p~~D~~p~LlaldA~v~i~s~~g~R~ipl~d---F~~g~~~t~l~~~Eil~~I~ip~~--~~~~~~~~~~k~~~R~~~ 192 (292)
T PRK09971 118 GATSADSATPLFALDAKLELHSPNGVRFVPING---FYTGPGKVSLEHDEILVAFHIPPQ--PYEHAGGAYIKYAMRDAM 192 (292)
T ss_pred CCCCCHHHHHHHHHHCEEEEECCCCCEECCHHH---HCCCCCCCCCCCCCEEEEEEECCC--CCCCCCEEEEEEEECCCC
T ss_conf 787501679999964046897389977333899---625755333577536999997478--867774399999524644
Q ss_pred CCCCCCCCCE--ECCCCC-EEEEEEEECCCCCCCH-H-HHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 0152100000--025883-0468998555103076-7-899999739868353313443732440476799986588770
Q gi|254780662|r 1086 DIGDKGNNIL--RVTADK-VRAKVIGEGANLGLTQ-Q-ARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRD 1160 (1576)
Q Consensus 1086 ~vgd~and~~--rv~g~~-lr~kvi~EG~NLg~Tq-~-~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~ 1160 (1576)
+. -.++-++ ++++.. ..+|+..= ..+-|+ + --.|-.+.|-.++.+.++.. .+.+.+...-.
T Consensus 193 d~-a~v~~A~~~~~~~~~i~~~ria~G--gv~~~p~r~~~~E~~L~g~~~~~~~i~~a-----------~~~~~~~~~p~ 258 (292)
T PRK09971 193 DI-ATIGCAVHCRLDNGNFSDLRLAFG--VAAPTPIRCQHAEQTAQNAPLNLETLEAI-----------SELALQDVAPR 258 (292)
T ss_pred CE-EEEEEEEEEEECCCEEEEEEEEEE--CCCCCCEEHHHHHHHHCCCCCCHHHHHHH-----------HHHHHHCCCCC
T ss_conf 11-427889999974993999999750--56786266899999965999998999999-----------99987569986
Q ss_pred CCC--CHHHHHHHHHHHHH
Q ss_conf 798--98899889998789
Q gi|254780662|r 1161 GRL--TLENRNKLLSSMTS 1177 (1576)
Q Consensus 1161 g~l--t~~~Rn~lL~~mtd 1177 (1576)
.++ +.+=|..+...|+.
T Consensus 259 sD~ras~~YR~~l~~~l~~ 277 (292)
T PRK09971 259 SSWRASKEFRLHLIQELTK 277 (292)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 6772899999999999999
No 133
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=30.41 E-value=22 Score=11.81 Aligned_cols=147 Identities=13% Similarity=0.148 Sum_probs=69.2
Q ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHCC---CC-----C----CCCCHHH----HHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 8989999999-7147999999999987528---88-----7----7520488----999999999998630368327799
Q gi|254780662|r 658 WSQNFIARVL-SKNPTISQLLFSLFRYRFD---PS-----L----SDQERGE----NTKRILGEIDSALLKVPSLDDDTV 720 (1576)
Q Consensus 658 ~s~~~i~~~l-~~~p~~~~~l~~~F~~rFd---P~-----~----~~~~r~~----~~~~~~~~~~~~l~~V~~ld~dri 720 (1576)
+...|+..+| ..-|++.+.+-..|...|. |- . -+.+|+- ..+.... +..+.-.+|
T Consensus 206 ~gl~y~~~sl~~avP~l~r~~~~~~~~~~~~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~--------~~~~~r~~~ 277 (910)
T COG2352 206 NGLAYYENSLWQAVPKLLRELNEALQETFGELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQ--------ALLLQRWKA 277 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--------HHHHHHHHH
T ss_conf 789998887999879999999999998634236777885233567467889998768999999--------999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHCCC---CCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEECCHHH
Q ss_conf 9999999997522287305898863688639577788---8888785699998386579984054233040420088578
Q gi|254780662|r 721 LRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINS---VGTDELHREIFVYGVEVEGVHLRCGKIARGGLRWSDRAAD 797 (1576)
Q Consensus 721 lr~~~~~i~atlRTN~y~~~~~~~~lsfkld~~~i~~---~p~p~P~~eifv~sp~~eGvHlR~g~vARGGlRwSdR~ed 797 (1576)
+..|+.=|....+. +=... ---|..|..+.. -+.+-| +-+.|-
T Consensus 278 ~~~Yl~~i~~L~~e-LS~S~-----~~~~vs~el~ala~~~~d~~~----------------------------~r~~EP 323 (910)
T COG2352 278 LDLYLKEIQKLYSE-LSMST-----RLVKVSPELLALAGESQDQSI----------------------------RRADEP 323 (910)
T ss_pred HHHHHHHHHHHHHH-HCHHH-----HCCCCCHHHHHHHHCCCCCCH----------------------------HHCCCC
T ss_conf 99999999999998-16132-----026479999998844865310----------------------------111462
Q ss_pred HHHHHHHHHH----HHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8888999899----84532874288875327871689988998999999999999999
Q gi|254780662|r 798 YRTEVLGLVR----AQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYV 851 (1576)
Q Consensus 798 frtEvlgL~k----aQ~vKN~vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi 851 (1576)
||..+.++.+ ||..-+..- .|.. | ++..|+-...+.+.+.-..||++..
T Consensus 324 YR~al~~i~~rL~~T~~~l~~~~--~~~~-~--~~~~~~y~~~~el~~dL~~i~~SL~ 376 (910)
T COG2352 324 YRRALKYIRSRLMATQAYLDGLL--AGEE-G--VGPEPPYTSPEELLEDLYAIYQSLH 376 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CCCC-C--CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999982352--4334-6--7877655798999989999999998
No 134
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=30.26 E-value=22 Score=11.79 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999998818888989999999714799999999998752888--775204889999999999986
Q gi|254780662|r 643 VLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFDPS--LSDQERGENTKRILGEIDSAL 709 (1576)
Q Consensus 643 ~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFdP~--~~~~~r~~~~~~~~~~~~~~l 709 (1576)
-|..|-.=|.|.|++|+.++|-+.=.+|-+=.++.-++...+=.|+ .+.++ +.+...+...++.++
T Consensus 196 ~l~GykE~L~~~gI~~~e~L~~~~~YsY~~G~K~~~~l~~s~p~~tAv~v~~D-E~A~G~lnaa~D~Gi 263 (332)
T TIGR01481 196 RLEGYKEALKKAGIAYEEDLVIEAKYSYDAGVKLAAELLESSPKITAVVVADD-ELAIGILNAALDAGI 263 (332)
T ss_pred CCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCH-HHHHHHHHHHHHCCC
T ss_conf 13304678873687414221330455504469999999853899658998182-889999999985789
No 135
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=30.17 E-value=13 Score=13.62 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-HH-HHHHHHHHH
Q ss_conf 99999987528887752048899999999999863036832779-99-999999997
Q gi|254780662|r 676 LLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDT-VL-RSYVNLISG 730 (1576)
Q Consensus 676 ~l~~~F~~rFdP~~~~~~r~~~~~~~~~~~~~~l~~V~~ld~dr-il-r~~~~~i~a 730 (1576)
...+.|..+|.=+..--+ ..+++.++|+.|++-.+-| |. |.|..+++-
T Consensus 61 ~V~~~F~~~lg~nl~~VD-------A~e~FL~~L~GV~DPE~KRKIIG~~FI~VFE~ 110 (319)
T TIGR00884 61 RVVKTFSDKLGLNLVVVD-------AKERFLSALKGVTDPEEKRKIIGRVFIEVFER 110 (319)
T ss_pred HHHHHHHHHHCCCCEEEC-------CCHHHHHHCCCCCCCHHHCCHHHHHHHHHHHH
T ss_conf 999998753089827876-------10798875288987034131122566777888
No 136
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=30.06 E-value=22 Score=11.77 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCEEE---E--EECCCCCEEE
Q ss_conf 7877438999999999779912799846489---9--9889973742
Q gi|254780662|r 94 VDNIPFLYQSIIGEIVARCRNLTMAVHPVFT---K--DKNCDWQLYS 135 (1576)
Q Consensus 94 ~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~---V--~RD~~G~L~~ 135 (1576)
+.-+|+|+-.+---|...+++.|.++..-+. | +=-++|+++-
T Consensus 6 tp~RPYLlRA~yeWl~DN~~TPhlvVd~t~~Gv~VP~eyvkDgqIVL 52 (155)
T COG2969 6 TPRRPYLLRALYEWLLDNQLTPHLVVDVTLPGVKVPMEYVRDGQIVL 52 (155)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHCCCCEEEE
T ss_conf 88861679999999851798713899625567327877713885999
No 137
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit; InterPro: IPR004430 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . Members of this entry are 3-isopropylmalate dehydratase, large subunit, or the large subunit domain of single-chain forms. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (4.2.1 from EC) and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The archaeal leuC-like proteins are not included in group.; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=30.06 E-value=15 Score=13.27 Aligned_cols=22 Identities=5% Similarity=0.314 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHCCCCHHH
Q ss_conf 6987564356999963998999
Q gi|254780662|r 619 HERVDNDSFNHLIMLTDLRVYE 640 (1576)
Q Consensus 619 ~~~~e~D~~n~Lv~~~~l~~r~ 640 (1576)
..+||..||.+.-+.||+.||+
T Consensus 390 K~QAE~EGLDkIF~eAGfEWR~ 411 (472)
T TIGR00170 390 KKQAEKEGLDKIFIEAGFEWRE 411 (472)
T ss_pred HHHHHHCCCCHHHHHCCCCCCC
T ss_conf 7887331621788871700014
No 138
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=30.02 E-value=22 Score=11.76 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 015210000002588304689985551030767899999739868353313443732440476
Q gi|254780662|r 1086 DIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148 (1576)
Q Consensus 1086 ~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EV 1148 (1576)
.+|||-||++=++.. =+.==|==|==||..|.+ +.++.+-=++.++.++-=||.++..++-
T Consensus 144 gIgDRHn~NImi~~~-Ghl~HIDFGfiLg~~pg~-~~fE~aPFkLT~emv~vmGG~~S~~f~~ 204 (293)
T cd05168 144 QIKDRHNGNILIDND-GHIIHIDFGFMLSNSPGN-VGFETAPFKLTQEYIEVMGGVNSDLFNY 204 (293)
T ss_pred CCCCCCCCCEEECCC-CCEEEEEHHHHHCCCCCC-CCCCCCCEECCHHHHHHHCCCCCHHHHH
T ss_conf 356657886478898-889987424553458888-8888899533799999858988578999
No 139
>PRK05751 preprotein translocase subunit SecB; Validated
Probab=30.00 E-value=22 Score=11.76 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEEEEEEEECHHHH-----------CCCHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 8778788521004762-----------68855462089999999997488988
Q gi|254780662|r 309 LIGELHVVGFFTRLVY-----------SQRASKIPLLREKIVKVQNLLNFHPN 350 (1576)
Q Consensus 309 viGE~RFlGLFTSsAY-----------~~sv~~IPiLRrKV~~VL~~sGf~p~ 350 (1576)
.+-|.-.-|+|+-... ..+-.=-|.+|+-+..++..+||+|=
T Consensus 68 f~~El~yagif~i~~~~~~~l~~~lli~cP~~lfP~aR~ii~~l~~~gGFppl 120 (147)
T PRK05751 68 FLCEVQQAGIFTIRNIPEEQLAPLLGIECPNILFPYAREIISDLVRRGGFPPL 120 (147)
T ss_pred EEEEEEEEEEEEECCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998889999977899899865660046166556899999999970799975
No 140
>pfam02438 Adeno_100 Late 100kD protein. The late 100kD protein is a non-structural viral protein involved in the transport of hexon from the cytoplasm to the nucleus.
Probab=29.98 E-value=22 Score=11.76 Aligned_cols=156 Identities=18% Similarity=0.322 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------CCCHHHHHHHHHHHHHHC---CCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 3179999999999988673523899988870------999999999999999981---9378999998607858989999
Q gi|254780662|r 1299 QLRRAIVATVLANEIINKGGSCFVVSLAKET------GSSTEDVIRSAVIAYAGY---ELESLWQEVDKLDNQISGELQN 1369 (1576)
Q Consensus 1299 ~LrREIIaT~laN~iVNr~G~tF~~rl~e~t------Ga~~~~i~rAy~~a~~if---~l~~l~~~I~aLd~~v~a~~q~ 1369 (1576)
++.++|--+-|+| +|--||+|+=+|+...+ |..-.|-+|--+-.-=|| -.-++|++- ..-
T Consensus 264 k~a~~is~v~LSn-~Vty~Gi~heNrL~n~vlH~tL~ge~rrDYi~DtIyLfLv~tWQTAMgvWQQ~----------Lee 332 (583)
T pfam02438 264 KLACKITNVNLSN-LVTYHGITHENRLNNPVLHSTLEGEDRRDYIRDTIYLFLVYTWQTAMGVWQQC----------LEE 332 (583)
T ss_pred HHHHHHHCCCHHH-HHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_conf 9999996375765-56773201116688767776532752200676638999999888688999986----------138
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999999999999851887789899999999---999999987257359899999999999999769998899998
Q gi|254780662|r 1370 KIYEEIRLIFINLTRLLIKNGKFIGDIGNAVKRLV---TAFHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPPDLADRI 1446 (1576)
Q Consensus 1370 ~l~~~~~~ll~r~trW~lr~~~~~~~i~~~i~~~~---~~v~~l~~~l~~~l~~~~~~~~~~~~~~l~~~Gvp~~LA~~v 1446 (1576)
+-+.+++.++.+.-+=+..- .....|++.++..- .-...+...||+++.......+..-+ +...|+|+..+-.+
T Consensus 333 ~nl~~l~k~L~~~~~~l~~~-~~~~~ia~~ladiifp~~L~~tl~~~LPDF~sQSql~nFRsFI--leRSgIlpa~~~al 409 (583)
T pfam02438 333 ENLKELKKLLTRNKRALWTL-FSERTIAEALADIIFPEKLLETLQKGLPDFISQSQLQNFRSFI--LERSGILPAICPAL 409 (583)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCCCHHHCCCC
T ss_conf 89999999999720333007-8888999999985088899999986386421099999999999--98339941212577
Q ss_pred HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 4322556640099999880999899999999
Q gi|254780662|r 1447 VRMQFLMVVPDLIDISETCDTSLLVVLDMWS 1477 (1576)
Q Consensus 1447 a~l~~l~~~ldIv~vA~~~~~~~~~va~~yf 1477 (1576)
+ -|.|-++-+ +.++..=+.+|.
T Consensus 410 ---P-----SDFVPl~fk-E~pP~LW~h~YL 431 (583)
T pfam02438 410 ---P-----SDFVPLTFK-ESPPPLWAHVYL 431 (583)
T ss_pred ---C-----CCCCCCCCC-CCCCCHHHHHHH
T ss_conf ---7-----555654215-589842589999
No 141
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=29.91 E-value=22 Score=11.75 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=58.3
Q ss_pred CEEE-EEEEECCCCEE------EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHH--H-----------HH---HHHH
Q ss_conf 8478-76432277638------99999971798777379899999999998543277--9-----------99---9750
Q gi|254780662|r 435 GHVA-FYSSILEEGLV------RIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDK--F-----------YK---SAGD 491 (1576)
Q Consensus 435 g~v~-f~t~~sEs~LA------RvHfiir~~~~~~~~vD~~~LE~~i~~~~rsW~D~--L-----------~~---al~~ 491 (1576)
+++. |--.+|++.|+ ++.+ +... ...+.+..++|-+-|.+.+|.=.== | .| ++.+
T Consensus 27 ADVvlYD~Lv~~~iL~~~~~~Ae~i~-VGKr-~g~h~~~Q~~IN~lLV~~A~~G~~VVRLKGGDP~vFGRgGEE~~~L~~ 104 (242)
T TIGR01469 27 ADVVLYDRLVSPEILAYAPEQAELID-VGKR-PGHHSVKQEEINRLLVELAREGKKVVRLKGGDPFVFGRGGEEAEALAE 104 (242)
T ss_pred CCEEEEECCCCHHHHHHCCCCCEEEC-CCCC-CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCHHHHHHHHHH
T ss_conf 99789842789899971788778971-4777-962688978999999999853985899748998437856899999996
Q ss_pred -C---------------CCCCCCCHHHHHHCCHHHHHHHHHHHHHCCC-CC--CC-EEEEECCCCCCEEEEEEEECCCCC
Q ss_conf -1---------------1100489788652798899999999973237-88--61-566503788870799997479876
Q gi|254780662|r 492 -G---------------VPRFIFSQTFRDVFSPEKAVEDLPYIISCAE-GK--EK-LRVCFENKEDGKVQIKIFHARGPF 551 (1576)
Q Consensus 492 -~---------------~~~~aFp~~Yre~f~p~~Av~Di~~le~l~~-~~--~~-~~~~~~~~~~~~~~lk~~~~~~~~ 551 (1576)
+ --.-.||-.+|..-+- +..+..=.. .+ .. .+.+. ......--|.+||-- -
T Consensus 105 ~GI~~EvvPGvTsA~Aa~a~aGiPlThR~~~~s------~~f~TGh~~~~~~~~~~~~~W~-~lA~~~~Tlv~yMG~--~ 175 (242)
T TIGR01469 105 AGIPFEVVPGVTSAIAAAAYAGIPLTHRGLARS------VTFVTGHEAKEGEEALNEVDWE-ALAKGGGTLVIYMGV--A 175 (242)
T ss_pred CCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCC------EEEEEEEEECCCCCCCCCCCHH-HCCCCCCCEEEEHHH--H
T ss_conf 689798738811677899855899541302173------1688535406888776757866-715767726886217--8
Q ss_pred CHHHHHHHHHHCCCE
Q ss_conf 698988889856957
Q gi|254780662|r 552 SLSKRVPLLENLGFT 566 (1576)
Q Consensus 552 ~Ls~~~p~l~~~G~~ 566 (1576)
.|.++.+-|-.-|..
T Consensus 176 ~l~~I~~~Li~~G~~ 190 (242)
T TIGR01469 176 NLAEIAKELIEAGRD 190 (242)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 899999999963889
No 142
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=29.88 E-value=17 Score=12.62 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCEE
Q ss_conf 989888898569579
Q gi|254780662|r 553 LSKRVPLLENLGFTV 567 (1576)
Q Consensus 553 Ls~~~p~l~~~G~~v 567 (1576)
+..++..|+.+|.++
T Consensus 13 ~rs~~~aL~~lG~~~ 27 (191)
T PRK13525 13 VREHIAALEALGAEA 27 (191)
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 999999999879978
No 143
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=29.87 E-value=22 Score=11.74 Aligned_cols=48 Identities=35% Similarity=0.449 Sum_probs=32.3
Q ss_pred EEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCH-HHCCCCCEEEEE
Q ss_conf 997394368677788137989999999668987003897-871789708982
Q gi|254780662|r 979 AAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDR-KVLSKGGMIISR 1029 (1576)
Q Consensus 979 aafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~-~liS~gGgv~~r 1029 (1576)
+.+||.|+|+=.+--.--+|+||.+|... +-+|.+- ..++.|-++.|+
T Consensus 24 ~~~D~l~vFvv~ed~S~F~~~~R~~LV~~---g~~~l~Nv~v~~g~~YiIS~ 72 (182)
T smart00764 24 AECDWVHLFVVSEDASLFSFDERFALVKK---GTKDLDNVTVHSGSDYIISR 72 (182)
T ss_pred HHCCEEEEEEECCCCCCCCHHHHHHHHHH---HHCCCCCEEEECCCCEEEEC
T ss_conf 64998999997366673889999999999---75779987997799989863
No 144
>COG3612 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.78 E-value=22 Score=11.73 Aligned_cols=30 Identities=13% Similarity=-0.064 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999750065179999999999984898824
Q gi|254780662|r 1195 SLESRKGMAMMWNFAQLMKFLGKEGALDRE 1224 (1576)
Q Consensus 1195 s~~~~~~~~~~~~~~rli~~Le~~g~Ldr~ 1224 (1576)
+++-.+.--..+.-.|+...-+++|.|-+.
T Consensus 28 ~lSfdrkw~spd~akr~vd~A~~eGLL~~k 57 (157)
T COG3612 28 VLSFDRKWFSPDVAKRVVDEALAEGLLVKK 57 (157)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 988666425867799999999865640322
No 145
>PRK02925 glucuronate isomerase; Reviewed
Probab=29.74 E-value=22 Score=11.73 Aligned_cols=105 Identities=18% Similarity=0.298 Sum_probs=71.4
Q ss_pred HHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999739868353313443732440476799986588770798988998899987899999998500789999999975
Q gi|254780662|r 1120 RVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAISLESR 1199 (1576)
Q Consensus 1120 Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~~mtdeV~~lVL~~n~~Q~~~ls~~~~ 1199 (1576)
+-.|...|+++---.++.---..||+.|++ -++..+...|.+|.+|.+++-..|--+.+++-.+++.-+.+-++..+-
T Consensus 225 ~~~F~~~Gcr~sDHgl~~~~~~~~s~~ea~--~if~kal~g~~ls~~e~~~f~~~~L~~la~~y~e~gwvmQlH~Ga~RN 302 (466)
T PRK02925 225 RDYFAAHGCRSSDHGLPTARFAELSEAEAD--AIFAKALAGGTLSEEEIAQFRTAMLTELARMYAEDGWVMQLHIGALRN 302 (466)
T ss_pred HHHHHHCCCEEECCCCCCCCCCCCCHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 999998689862368987777889999999--999999838999999999999999999999998779721232554546
Q ss_pred HHH------------------HHHHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 006------------------517999999999998489882430
Q gi|254780662|r 1200 KGM------------------AMMWNFAQLMKFLGKEGALDRELE 1226 (1576)
Q Consensus 1200 ~~~------------------~~~~~~~rli~~Le~~g~Ldr~~E 1226 (1576)
... .......+|+..|.+++.|-+.+=
T Consensus 303 ~n~~~f~~~G~D~G~D~i~d~~~~~~L~~lLd~l~~~~~LpktIl 347 (466)
T PRK02925 303 NNTRMFKKLGPDTGFDSIGDTDIAEALSPLLDKLGNENRLPKTIL 347 (466)
T ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 799999972999885887878889999999986326699974898
No 146
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=29.51 E-value=22 Score=11.70 Aligned_cols=106 Identities=24% Similarity=0.420 Sum_probs=48.7
Q ss_pred CHHCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEEC
Q ss_conf 01105699998-------84310114678999999999980899654864599605886332443111276620899973
Q gi|254780662|r 910 DAFASGGSMGY-------DHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFD 982 (1576)
Q Consensus 910 dAFaSGgs~Gy-------dHK~mGITarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafd 982 (1576)
|-||-+|+-|. .+-.+==..+-|-.-.++....+|...+ ..++ -+|++ -.|+. +-....
T Consensus 49 DlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~---~~~~-----~~da~---~~L~~---~~~~~~ 114 (187)
T COG0742 49 DLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGE---ARVL-----RNDAL---RALKQ---LGTREP 114 (187)
T ss_pred EECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCC---EEEE-----EECHH---HHHHH---CCCCCC
T ss_conf 9468764768999857885699996598999999999998487612---5998-----40089---99872---277885
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCC
Q ss_conf 9436867778813798999999966898700389787178970898214442179
Q gi|254780662|r 983 HSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLT 1037 (1576)
Q Consensus 983 h~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls 1037 (1576)
.-=||+|| |=..--...-..+-.+....| ++++|-|+-...+.+.+.
T Consensus 115 FDlVflDP-Py~~~l~~~~~~~~~~~~~~~-------L~~~~~iv~E~~~~~~~~ 161 (187)
T COG0742 115 FDLVFLDP-PYAKGLLDKELALLLLEENGW-------LKPGALIVVEHDKDVELP 161 (187)
T ss_pred CCEEEECC-CCCCCHHHHHHHHHHHHHCCC-------CCCCCEEEEEECCCCCCC
T ss_conf 12899689-975360668999988876587-------788968999827877756
No 147
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=29.32 E-value=18 Score=12.42 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCE-EEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCH-HHH
Q ss_conf 999999972984-787643227763899999971798777379899999999998543-277
Q gi|254780662|r 425 IGNYLSEVCEGH-VAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACW-EDK 484 (1576)
Q Consensus 425 Iq~~L~~al~g~-v~f~t~~sEs~LARvHfiir~~~~~~~~vD~~~LE~~i~~~~rsW-~D~ 484 (1576)
|.++|.++++-. ++-.-..+.-|..|+-=-+..+ -..+..|.+..++-+.++..+- ++.
T Consensus 2 l~~ll~~~~~~~aSD~HL~aG~PP~~R~~G~~~~~-~~~~plt~~~~~~l~~~~l~~th~~~ 62 (350)
T TIGR01420 2 LEELLREAVKKGASDIHLSAGLPPAIRIDGDLRTR-IGFEPLTPEDTQKLLREILSSTHEKQ 62 (350)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEEEECCCEECC-CCCCCCCHHHHHHHHHHHCCCCCHHH
T ss_conf 67889999848997488503774037547831034-46789898999999998638456577
No 148
>CHL00004 psbD photosystem II protein D2
Probab=29.24 E-value=22 Score=11.66 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=4.5
Q ss_pred CCCCCEEEEEEC
Q ss_conf 654864599605
Q gi|254780662|r 947 IQSTPFTVAGVG 958 (1576)
Q Consensus 947 ~q~~~fTvvgiG 958 (1576)
+--.||-..|+-
T Consensus 192 ~~m~PfHm~GVa 203 (353)
T CHL00004 192 WTLNPFHMMGVA 203 (353)
T ss_pred HHCCCHHHCCCC
T ss_conf 104825542655
No 149
>KOG1231 consensus
Probab=28.82 E-value=14 Score=13.59 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=73.4
Q ss_pred HHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHH-H--CCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC
Q ss_conf 1127662089997394368677788137989999999-6--689870038978717897089821444217989998709
Q gi|254780662|r 969 MLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLF-D--SPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIG 1045 (1576)
Q Consensus 969 mLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf-~--lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l~ 1045 (1576)
|-.|.+.+=+.++....-.+|- .|+.-|.+..+-- + |--.||.||-+ +|-||-+=.. |
T Consensus 116 m~~~~~~~~~~~~~~~~~yvdV--~~g~~Widll~~t~e~GL~p~swtDyl~--ltVGGtlsna---------------g 176 (505)
T KOG1231 116 MDSSLLMKDVPVLVVDDLYVDV--SAGTLWIDLLDYTLEYGLSPFSWTDYLP--LTVGGTLSNA---------------G 176 (505)
T ss_pred EEHHHCCCCCCEEECCCCEEEE--ECCHHHHHHHHHHHHCCCCCCCCCCCCC--EEECCEECCC---------------C
T ss_conf 8401026787324414624784--0780089999999973988667678632--0223164167---------------5
Q ss_pred CCCCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 88554288899986303653044338742111268986200152100000025883046899855510307678999997
Q gi|254780662|r 1046 ISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSL 1125 (1576)
Q Consensus 1046 ~~~~~~~p~eli~~iL~a~vDLlw~gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~ 1125 (1576)
+.-+..----.|..++...| --|=|+-++++.+ -+.++-.-|+|-=|-+|+--+|||.++-
T Consensus 177 iggqafRyGpqi~NV~~LdV----VtgkGeiv~cs~r---------------~n~~lf~~vlGglGqfGIITrArI~le~ 237 (505)
T KOG1231 177 IGGQAFRYGPQISNVIELDV----VTGKGEIVTCSKR---------------ANSNLFFLVLGGLGQFGIITRARIKLEP 237 (505)
T ss_pred CCCCEEECCCHHHCEEEEEE----ECCCCCEEECCCC---------------CCCEEEEEEECCCCCEEEEEEEEEEECC
T ss_conf 46530442650114478899----8179758963310---------------4840100131367510158889997315
Q ss_pred CCCE
Q ss_conf 3986
Q gi|254780662|r 1126 NGGR 1129 (1576)
Q Consensus 1126 ~Gg~ 1129 (1576)
+--|
T Consensus 238 aP~~ 241 (505)
T KOG1231 238 APKR 241 (505)
T ss_pred CCCC
T ss_conf 8862
No 150
>pfam00952 Bunya_nucleocap Bunyavirus nucleocapsid (N) protein. The bunyaviruses are enveloped viruses with a genome consisting of 3 ssRNA segments (called L, M and S). The nucleocapsid protein is encode on the small (S) genomic RNA. The N protein is the major component of the nucleocapsids. This protein is thought to interact with the L protein, virus RNA and/or other N proteins.
Probab=28.75 E-value=23 Score=11.60 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=7.6
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 99847899998883998999888
Q gi|254780662|r 1269 LIDDPFFFSILLSYFPRQLSELY 1291 (1576)
Q Consensus 1269 l~dd~~~~~~l~~yfP~~l~~~f 1291 (1576)
+|||..--..+..|...-+-+.|
T Consensus 80 v~d~~LTlHRlSGyLAR~~Le~~ 102 (228)
T pfam00952 80 VPDDGLTLHRLSGYLARWLLEQY 102 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99888326687879999999998
No 151
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=28.55 E-value=20 Score=12.14 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=60.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCC------CCC
Q ss_conf 89887762568884028831030538986799817788832689999999880899850110569999884------310
Q gi|254780662|r 852 RALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDH------KKM 925 (1576)
Q Consensus 852 ~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydH------K~m 925 (1576)
..+=+|+ ..+|.-+.++++.+. |-.+|=-..|=+..+.+ +-.+- |...-++|||| ++-
T Consensus 17 ~~~g~v~--~~~gr~i~~~~l~da---D~LiVRS~T~V~~~LL~---------~s~lK--fIgtat~G~DhID~~~l~~~ 80 (379)
T PRK00257 17 AGFGEIR--RLPGRDFDRAAVRDA---DALLVRSVTRVDRALLE---------GSKVR--FVGTCTIGTDHLDLDYFAEA 80 (379)
T ss_pred HCCCEEE--ECCCCCCCHHHHCCC---CEEEEECCCCCCHHHHC---------CCCCE--EEEECCCCCCCCCHHHHHHC
T ss_conf 1068089--768997998890778---89999568744899975---------69926--99974563531469999869
Q ss_pred CC--------CHHHHHHHHHHHH----HHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECC
Q ss_conf 11--------4678999999999----98089965486459960588633244311127662089997394368677
Q gi|254780662|r 926 GI--------TARGAWETVKRHF----REMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDP 990 (1576)
Q Consensus 926 GI--------TarGaw~~v~rhf----relg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP 990 (1576)
|| -|..+-|+|--.+ +..|.+.....+-+||.|-..+-| .+...+|+-.-+++||
T Consensus 81 gI~v~naPG~Na~sVaEyvl~~ll~la~~~g~~l~gktvGIIG~G~IG~~v----------a~~l~afG~~vl~~DP 147 (379)
T PRK00257 81 GITWSNAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGIVGVGHVGGRL----------VRVLRGLGWKVLVCDP 147 (379)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEECCCHHHHHH----------HHHHHHCCCEEEEECC
T ss_conf 978996998777999999999999999850866519879997716799999----------9999977998999784
No 152
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=28.40 E-value=23 Score=11.55 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCEEEEEECC---CEEEEEEECCCCCCCEEE
Q ss_conf 999999999997522287305898863688639577788888878569999838---657998405423304042
Q gi|254780662|r 719 TVLRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINSVGTDELHREIFVYGV---EVEGVHLRCGKIARGGLR 790 (1576)
Q Consensus 719 rilr~~~~~i~atlRTN~y~~~~~~~~lsfkld~~~i~~~p~p~P~~eifv~sp---~~eGvHlR~g~vARGGlR 790 (1576)
.|.+.+.+-+.+-+.-|++.. . ++..|--..--++|-..-..-+||..+ ++|=+|-+-==+|=||.=
T Consensus 137 ~~~~~L~~~a~~~p~~~~~~~---~--~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g 206 (546)
T TIGR00551 137 EVISTLLKKARSEPNVEIIEG---E--VALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLG 206 (546)
T ss_pred HHHHHHHHHHHCCCCEEECCC---C--EEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCC
T ss_conf 999999999743776241012---1--444444225024798887999999716787237763010003207732
No 153
>COG3805 DodA Aromatic ring-cleaving dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.08 E-value=23 Score=11.51 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=12.4
Q ss_pred EEEECCCEEEECCCCCCCCCHHHHHHH
Q ss_conf 999739436867778813798999999
Q gi|254780662|r 978 VAAFDHSDIFIDPDPNSETTFDERKRL 1004 (1576)
Q Consensus 978 vaafdh~hif~DP~PD~~~s~~Er~RL 1004 (1576)
++.| |-||++||. ..-.+|+-|+
T Consensus 8 It~f-HAHvYFD~a---~~~~Ae~~R~ 30 (120)
T COG3805 8 ITMF-HAHVYFDPA---QAIVAERFRQ 30 (120)
T ss_pred EEEE-EEEEEECHH---HHHHHHHHHH
T ss_conf 0157-778987737---7788999999
No 154
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=27.97 E-value=23 Score=11.49 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=84.0
Q ss_pred CCCCCEECCCCCCEEEEECC-CCCCHHHHHHHHHHHHCCCCCC----CHHCCCCCC------CCCCCCCCC-CHHHHHHH
Q ss_conf 88310305389867998177-8883268999999988089985----011056999------988431011-46789999
Q gi|254780662|r 868 HPDNTVCLDGNDPYFVVAAD-KGTATFSDTANILAQEAKFWLD----DAFASGGSM------GYDHKKMGI-TARGAWET 935 (1576)
Q Consensus 868 ~p~~vv~~d~~d~ylvvaaD-kgTa~fsD~An~ia~~~gfwlg----dAFaSGgs~------GydHK~mGI-TarGaw~~ 935 (1576)
+|+.++.....=.|.|..-| .-|.-|.|--+.+..-.++--| +-|+--|.. |=--+..+| .|+.|-+-
T Consensus 176 ~~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~ 255 (393)
T COG1092 176 APEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEW 255 (393)
T ss_pred CCCCEEEEECCEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 88747998078069986587420045287679999986131687678864667699999986699714898265789999
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCH---HHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 999999808996548645996058863324431---11276620899973943686777881379899999996689870
Q gi|254780662|r 936 VKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG---MLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSW 1012 (1576)
Q Consensus 936 v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNg---mLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw 1012 (1576)
.+++++-=|++.....|-+ ||||.== --..++-- =|++|| |-=+.|-....+.+.- -...
T Consensus 256 a~~N~~LNg~~~~~~~~i~-------~Dvf~~l~~~~~~g~~fD--------lIilDP-PsF~r~k~~~~~~~rd-y~~l 318 (393)
T COG1092 256 ARENAELNGLDGDRHRFIV-------GDVFKWLRKAERRGEKFD--------LIILDP-PSFARSKKQEFSAQRD-YKDL 318 (393)
T ss_pred HHHHHHHCCCCCCCEEEEH-------HHHHHHHHHHHHCCCCCC--------EEEECC-CCCCCCCCCCHHHHHH-HHHH
T ss_conf 9999986299710105672-------239999999985599556--------899788-1003582100538989-9999
Q ss_pred CCCCHHHCCCCCEEEEECCCCC
Q ss_conf 0389787178970898214442
Q gi|254780662|r 1013 QDFDRKVLSKGGMIISRKEKAV 1034 (1576)
Q Consensus 1013 ~dyd~~liS~gGgv~~r~~k~i 1034 (1576)
.+.-..++++||-++.-+..+.
T Consensus 319 ~~~~~~lL~pgG~l~~~s~~~~ 340 (393)
T COG1092 319 NDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHHHHHHCCCCCEEEEEECCCC
T ss_conf 9999997079968999936776
No 155
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.96 E-value=23 Score=11.49 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=16.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89867998177888326899999998808
Q gi|254780662|r 877 GNDPYFVVAADKGTATFSDTANILAQEAK 905 (1576)
Q Consensus 877 ~~d~ylvvaaDkgTa~fsD~An~ia~~~g 905 (1576)
+.+...||+||+|- ..||..+|...|
T Consensus 164 ~~~~~vvVsPD~G~---~~ra~~~A~~Lg 189 (319)
T PRK04923 164 GTDNLIVVSPDVGG---VVRARAVAKRLD 189 (319)
T ss_pred CCCCCEEECCCCCH---HHHHHHHHHHCC
T ss_conf 98771898479428---899999998708
No 156
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=27.80 E-value=24 Score=11.47 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=49.2
Q ss_pred EEEEECCCCCCCEEEE---------ECCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9984054233040420---------0885788888999899845328742-88875327871689988998999999999
Q gi|254780662|r 776 GVHLRCGKIARGGLRW---------SDRAADYRTEVLGLVRAQKVKNAVI-VPVGAKGGFYPKRLPSEGRRDEIIKIGRE 845 (1576)
Q Consensus 776 GvHlR~g~vARGGlRw---------SdR~edfrtEvlgL~kaQ~vKN~vI-vp~GaKGgfv~k~~~~~~~r~~~~~e~~~ 845 (1576)
=.|+|||.=- |--| -+-..||-.-+-.|+|.+...+.-| -.|||-||.+.- +...+.-.
T Consensus 482 IAHVRGGgel--G~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmG---------av~N~~P~ 550 (682)
T COG1770 482 IAHVRGGGEL--GRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMG---------AVANMAPD 550 (682)
T ss_pred EEEEECCCCC--CHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHH---------HHHHHCHH
T ss_conf 9995066434--757887344553336478899999999971767824158963572348999---------99861846
Q ss_pred HHHH------HH---HHHHHHHHCCCC
Q ss_conf 9999------99---898877625688
Q gi|254780662|r 846 AYKT------YV---RALLSITDNFEG 863 (1576)
Q Consensus 846 ~y~~------fi---~~lLditDN~~~ 863 (1576)
+|+. |+ +.|||=++-+..
T Consensus 551 lf~~iiA~VPFVDvltTMlD~slPLT~ 577 (682)
T COG1770 551 LFAGIIAQVPFVDVLTTMLDPSLPLTV 577 (682)
T ss_pred HHHHEEECCCCCCHHHHHCCCCCCCCC
T ss_conf 543124327733312320387789885
No 157
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.44 E-value=24 Score=11.42 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 62089999999997488988878799
Q gi|254780662|r 331 IPLLREKIVKVQNLLNFHPNSHSSRM 356 (1576)
Q Consensus 331 IPiLRrKV~~VL~~sGf~p~SHsgK~ 356 (1576)
-|-+|.|.+.|++..|+.|.|-+-..
T Consensus 71 YptvR~kld~vlramgy~p~~e~~~~ 96 (122)
T COG3877 71 YPTVRTKLDEVLRAMGYNPDSENSVN 96 (122)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 17899899999998089989987045
No 158
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=27.41 E-value=24 Score=11.42 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=27.5
Q ss_pred EEEEEEECHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99998211028999999999999997298478764322776389999997179877737989999999999854
Q gi|254780662|r 407 SSLIYIPREYFDSFVREKIGNYLSEVCEGHVAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVAC 480 (1576)
Q Consensus 407 S~LVyvPRDRYsT~vR~rIq~~L~~al~g~v~f~t~~sEs~LARvHfiir~~~~~~~~vD~~~LE~~i~~~~rs 480 (1576)
+.++.++.+- |-++..++.++...--...... +-|-+.+--.+.|..++ ..++..+|.++|..+-.+
T Consensus 8 all~~~~~~~-~~~~~~~i~al~~~l~~~~~~g---vve~vP~~~sllv~~d~---~~~~~~~l~~~L~~~~~~ 74 (223)
T COG2049 8 ALLVEFGPEI-SLELQRRIWALARALEAAPLPG---VVEIVPGYRSLLVIYDP---PRLDPQELLERLRALWEE 74 (223)
T ss_pred EEEEECCCCC-CHHHHHHHHHHHHHHHHCCCCC---EEEECCCCEEEEEEECC---CCCCHHHHHHHHHHHHHC
T ss_conf 8998237745-8578999999999998457778---06714343168999565---225789999999999846
No 159
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=27.27 E-value=22 Score=11.73 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=24.4
Q ss_pred EECHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCH
Q ss_conf 1004762688554620899999999974889888787999998722894
Q gi|254780662|r 318 FFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPR 366 (1576)
Q Consensus 318 LFTSsAY~~sv~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPR 366 (1576)
+|-...|..+-.+++.- --..-||-||++..++|.||.
T Consensus 285 IF~p~~~~kTfAELs~e-----------eKN~ISHRgkAlrkLlE~fp~ 322 (328)
T PRK02491 285 LFLVGETGRTAAELTAE-----------EKNQLSHRGQAVKKLMEVFPA 322 (328)
T ss_pred EEEECCCCCCCCCCCHH-----------HHHHCCHHHHHHHHHHHHHHH
T ss_conf 58879999514379978-----------946539299999999998398
No 160
>pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.
Probab=27.24 E-value=24 Score=11.39 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=65.0
Q ss_pred EECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 30538986799817788832689999999880899850110569999884310114678999999999980899654864
Q gi|254780662|r 873 VCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPF 952 (1576)
Q Consensus 873 v~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~f 952 (1576)
-+.-.+...|+|.+|-+--|+.|+....-+.-| .=.|.|.|..+.+|=. .....+..|++.+.-||
T Consensus 73 a~~~~~~~~l~v~~dsp~~t~~dli~~ak~~Pg---~~~~g~~G~gs~~hl~-----------~~~l~~~~G~~~~~Vpy 138 (274)
T pfam03401 73 SLLATSPMVLVVPADSPFKTLQELVAYAKANPG---KLTFASAGIGTSNHLA-----------GELLASKAGVQLSHVPY 138 (274)
T ss_pred HHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCC---CEEEECCCCCCCCHHH-----------HHHHHHHCCCCEEEECC
T ss_conf 865016358897799975689999999984899---6587327888631899-----------99999970996488346
Q ss_pred EEEEECCCCCCCCCC-------------HHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHH
Q ss_conf 599605886332443-------------1112766208999739436867778813798999
Q gi|254780662|r 953 TVAGVGDMSGDVFGN-------------GMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDER 1001 (1576)
Q Consensus 953 TvvgiGdmsGDVfGN-------------gmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er 1001 (1576)
.|.|++--++.|. .+.-+.++|.+|.+...-.-.=|| --++.|.
T Consensus 139 --~G~~~~~~allgG~vd~~~~~~~~~~~~v~~G~lr~Lav~~~~R~~~~Pd---VPT~~E~ 195 (274)
T pfam03401 139 --KGSSPALQDLLGGRVDMMIDSLTSTAPYIKAGKLRALAVTSPKRSPQLPD---VPTVAEL 195 (274)
T ss_pred --CCCHHHHHHHHCCEEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCCCCC---CCCHHHH
T ss_conf --78326689986784459983513204454179825999975756754489---9976884
No 161
>PRK01203 prefoldin subunit alpha; Provisional
Probab=27.04 E-value=24 Score=11.41 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=8.4
Q ss_pred CCCCCCCCEEEEEC
Q ss_conf 42888753278716
Q gi|254780662|r 815 VIVPVGAKGGFYPK 828 (1576)
Q Consensus 815 vIvp~GaKGgfv~k 828 (1576)
+|||+|| |+|+-|
T Consensus 71 lIvpIGS-GV~I~e 83 (130)
T PRK01203 71 LIVPIGS-GVYIAE 83 (130)
T ss_pred EEEECCC-CEEEEH
T ss_conf 6897377-345402
No 162
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=27.00 E-value=16 Score=12.92 Aligned_cols=115 Identities=11% Similarity=0.133 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCC---CCHHHHHHHHHHHHHCCEEEEEEEEEEEECCC
Q ss_conf 9999999999999999999779999999999999854--067753---11488999999997289188104799841377
Q gi|254780662|r 161 AIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFC--HLTGIK---EYAVEALTFLNWLNEDNFQFMGMRYHPLVAGQ 235 (1576)
Q Consensus 161 ~~~L~~~L~~VL~dVr~aV~Dw~aM~~rl~~l~~~L~--~~~~~~---ee~~Ea~aFL~WL~ddhFtFLGyReY~l~~~~ 235 (1576)
.+.+++.|---|.-|...-+=|...-+.+- .++. .+|.|. ...--=-.||+|+....=| |+. ...+|
T Consensus 65 a~~ic~~LGi~l~~~nf~~~Y~~~Vf~~~i---~~y~~G~TPnPDi~CN~~iKFG~~~e~~~~~~Gt--g~~---~~aTG 136 (394)
T TIGR00420 65 AQAICEKLGIPLEKVNFQKEYWNKVFEPFI---QEYKEGLTPNPDILCNKLIKFGLLLEYAKQLLGT--GND---KIATG 136 (394)
T ss_pred HHHHHHHCCCCEEEECHHHHHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCC---EEECC
T ss_conf 999998559818985507887888889999---9873677778620047120037899999985289--954---34424
Q ss_pred CCCEEE-ECCCCCC-CCCCCCC------------------CCCCCCCCCC-HHHHHHHCCCCCEEEEEC
Q ss_conf 751363-2288741-1003853------------------1125410189-788876126981899844
Q gi|254780662|r 236 KQVKLD-HDMPTEL-GILRDSS------------------IVVLGFDRVT-PATRSFPEGNDFLIITKS 283 (1576)
Q Consensus 236 ~~~~L~-~~~~sgL-GILR~~~------------------~~~~~~~~l~-~~~r~~~~~~~~LivtKa 283 (1576)
-=..+. ...+..| -|+|.-+ ....+++.|. +++|..|..-.|...|+.
T Consensus 137 HYAr~~q~~~~~~~~~L~~~~D~~KDQSYFL~~l~~~~~~~~~FPlG~L~K~~vR~iA~~~~PfL~ta~ 205 (394)
T TIGR00420 137 HYARIAQEIENKSLFELLRALDKNKDQSYFLYHLSQEQLAKLLFPLGELLKPEVRQIAKNAGPFLSTAE 205 (394)
T ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 476544342131014443046788861173764018988875053010367789999986486323445
No 163
>pfam00356 LacI Bacterial regulatory proteins, lacI family.
Probab=26.94 E-value=24 Score=11.35 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=12.0
Q ss_pred HHCCCHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 626885546208999999999748898
Q gi|254780662|r 323 VYSQRASKIPLLREKIVKVQNLLNFHP 349 (1576)
Q Consensus 323 AY~~sv~~IPiLRrKV~~VL~~sGf~p 349 (1576)
+.+.++.==|-.|+||..+.+..||.|
T Consensus 19 ~ln~~~~vs~~tr~rI~~~a~~lgY~p 45 (46)
T pfam00356 19 VLNNPERVSEETREKVEAAMEELGYVP 45 (46)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 987979899999999999999978999
No 164
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=26.90 E-value=24 Score=11.34 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 44217989998709885542888999863
Q gi|254780662|r 1032 KAVQLTPEAVAVIGISKQIATPSEIISAI 1060 (1576)
Q Consensus 1032 k~i~ls~~~~~~l~~~~~~~~p~eli~~i 1060 (1576)
|..+|||+..+.+|.++ +++.|.++++
T Consensus 3 kp~~lS~~La~~lG~~~--~sR~~v~k~l 29 (77)
T smart00151 3 KKVTLSPELAKVLGAPE--MTRTEIIKRL 29 (77)
T ss_pred CCCCCCHHHHHHHCCCC--CCHHHHHHHH
T ss_conf 88668999999878886--6699999999
No 165
>KOG2492 consensus
Probab=26.86 E-value=24 Score=11.34 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=13.5
Q ss_pred ECCHHHHHHHHHHHHHHHH
Q ss_conf 0885788888999899845
Q gi|254780662|r 792 SDRAADYRTEVLGLVRAQK 810 (1576)
Q Consensus 792 SdR~edfrtEvlgL~kaQ~ 810 (1576)
|--+.||-.|+|-|+.--.
T Consensus 332 SPHPKDfpdevl~li~~rd 350 (552)
T KOG2492 332 SPHPKDFPDEVLELIRDRD 350 (552)
T ss_pred CCCCCCCHHHHHHHHHHCC
T ss_conf 9998777399999988175
No 166
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]
Probab=26.85 E-value=24 Score=11.34 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHH--HHHH-HHHH-HHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 66689788899999999999769875643569999639989999--9999-9999-998818888989999999714799
Q gi|254780662|r 598 IARFDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEI--SVLR-SYAR-YLRQASVTWSQNFIARVLSKNPTI 673 (1576)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~e~D~~n~Lv~~~~l~~r~v--~~lr-a~~~-yl~Q~~~~~s~~~i~~~l~~~p~~ 673 (1576)
...++++++...+.+|+.++ |+-.|..- -|++|..+ +.+. .... -..|-|.+.+|..+-+.++.+-.
T Consensus 76 r~~V~~~~ip~~l~~Avia~-----ED~~Fy~H---~Gid~~~i~~aa~~~~~~g~~~~qGgSTITQQl~KN~fL~~~~- 146 (661)
T COG0744 76 REWVPLDQIPPNLKQALIAI-----EDRRFYEH---HGIDPKGIGRAALANNLSGGGVSQGGSTITQQLAKNLFLSNER- 146 (661)
T ss_pred CEEECHHHCCHHHHHHHHHH-----CCCCCCCC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC-
T ss_conf 51532798888998677411-----45642467---8839889999999987547876786260999999887417786-
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999875288877520488999999999998630368327799999999999
Q gi|254780662|r 674 SQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTVLRSYVNLIS 729 (1576)
Q Consensus 674 ~~~l~~~F~~rFdP~~~~~~r~~~~~~~~~~~~~~l~~V~~ld~drilr~~~~~i~ 729 (1576)
. -.|...+.-+.-.+ +. ...-|+||-.|++.+.
T Consensus 147 --------------t---~~RK~~E~~lA~~L----E~--~~sKdeILe~YLN~vy 179 (661)
T COG0744 147 --------------T---LDRKAKEAVLALWL----EA--LYSKDEILEMYLNQVY 179 (661)
T ss_pred --------------C---HHHHHHHHHHHHHH----HH--HCCHHHHHHHHHHHHH
T ss_conf --------------3---88999999999998----63--3289999999853410
No 167
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit; InterPro: IPR005683 The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins.The inner membrane translocase is formed of a complex with a number of proteins, including the Tim17, Tim23 and Tim44 subunits. This family is specific for the Tom22 proteins. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane.
Probab=26.83 E-value=24 Score=11.34 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=25.8
Q ss_pred CCCCCCCCCEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7428887532787168998-89989999999999999998988
Q gi|254780662|r 814 AVIVPVGAKGGFYPKRLPS-EGRRDEIIKIGREAYKTYVRALL 855 (1576)
Q Consensus 814 ~vIvp~GaKGgfv~k~~~~-~~~r~~~~~e~~~~y~~fi~~lL 855 (1576)
++|||+|-.+-|.-+-... ..-|.++...|..++-.=.+|||
T Consensus 66 kdiVppt~R~~i~~~~~ttt~fv~~~~~f~G~~aW~~stsaLL 108 (152)
T TIGR00986 66 KDIVPPTKRVKIADKYSTTTSFVKKLLSFAGKAAWAVSTSALL 108 (152)
T ss_pred HHCCCCCCCCEECCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 6248998640000110025589999987604457899998999
No 168
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=26.73 E-value=24 Score=11.32 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=7.3
Q ss_pred ECCCCCCCCCCHHHC
Q ss_conf 058863324431112
Q gi|254780662|r 957 VGDMSGDVFGNGMLL 971 (1576)
Q Consensus 957 iGdmsGDVfGNgmLl 971 (1576)
|.-..|-++|-|+-+
T Consensus 104 Iaav~G~a~GgG~~l 118 (260)
T PRK07260 104 IMCVDGAVAGAAANI 118 (260)
T ss_pred EEEECCEECCCHHHH
T ss_conf 999768540117589
No 169
>PRK05439 pantothenate kinase; Provisional
Probab=26.46 E-value=25 Score=11.28 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=30.0
Q ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHH-------------HH--CCCCCCCCHHHH
Q ss_conf 389999997179877737989999999999854327799997-------------50--111004897886
Q gi|254780662|r 448 LVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYKSA-------------GD--GVPRFIFSQTFR 503 (1576)
Q Consensus 448 LARvHfiir~~~~~~~~vD~~~LE~~i~~~~rsW~D~L~~al-------------~~--~~~~~aFp~~Yr 503 (1576)
-.++-|||++.+. ..+--+-.-+-+..+...|.+...-.+ .+ -.-+..||+||-
T Consensus 82 ~~~~PfIIGIaGS--VAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFLypNa~L~~rglm~RKGFPESYD 150 (312)
T PRK05439 82 GQKVPFIIGIAGS--VAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFLYPNAELKERGLMKRKGFPESYD 150 (312)
T ss_pred CCCCCEEEEEEEE--EECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 8899989997620--10262889999999995078999458993466557868998767712478985447
No 170
>COG1774 Uncharacterized homolog of PSP1 [Function unknown]
Probab=26.19 E-value=25 Score=11.25 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=62.3
Q ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51030767899999739868353313443732440476799986588770798988998899987899999998500789
Q gi|254780662|r 1111 ANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQ 1190 (1576)
Q Consensus 1111 ~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~~mtdeV~~lVL~~n~~Q 1190 (1576)
+||.-+=+.|||+-..|+| |..-+-+|..+--.+.-++-.| .|...+-.+.-..|
T Consensus 130 ~dLa~~fk~rIElrqig~r---deak~lgg~g~Cgr~~cc~~~l----------------------~df~~vs~K~a~eq 184 (265)
T COG1774 130 GDLAKIFKTRIELRQIGVR---DEAKMLGGIGPCGRRLCCSAFL----------------------KDFEPVSIKMAKEQ 184 (265)
T ss_pred HHHHHHHHHHHHHHHCCCH---HHHHHCCCCCCCCCHHHHHHHH----------------------HHHHHHHHHHHHHH
T ss_conf 9988998756677625715---7887537732274153699988----------------------88777889889876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHCCCCCHHHHHHHHHCCCCC
Q ss_conf 999999975006517999999999998489882-430599989999999778999
Q gi|254780662|r 1191 SLAISLESRKGMAMMWNFAQLMKFLGKEGALDR-ELEHLPSVVSFEERIREEVSL 1244 (1576)
Q Consensus 1191 ~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr-~~E~LP~~~~l~~r~~~g~gl 1244 (1576)
++.+.-....+.+ .|+|.-|--+-..+. .+.++|+..+...-.....++
T Consensus 185 ~l~l~p~klsg~c-----grlmccl~yE~~~y~~~~~~yp~~~~~i~~~~~~~~~ 234 (265)
T COG1774 185 NLLLNPNKLSGLC-----GRLMCCLKYEYQWYEKKLTFYPDSGERIDFRELVKGK 234 (265)
T ss_pred HHHHCCHHHCCCC-----CCHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHCCCC
T ss_conf 6643838562664-----5126776616999999997477777535424333553
No 171
>COG2090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.18 E-value=25 Score=11.25 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=10.5
Q ss_pred CCEEEEECCCCCCHHHHHHH
Q ss_conf 86799817788832689999
Q gi|254780662|r 879 DPYFVVAADKGTATFSDTAN 898 (1576)
Q Consensus 879 d~ylvvaaDkgTa~fsD~An 898 (1576)
|..+=+.|||+-++||++--
T Consensus 36 DCIIgi~Adk~~~dlse~fk 55 (141)
T COG2090 36 DCIIGISADKALRDLSEEFK 55 (141)
T ss_pred CEEEEECCCCCHHHHHHHHH
T ss_conf 87999806777667639999
No 172
>PRK11385 hypothetical protein; Provisional
Probab=26.07 E-value=25 Score=11.23 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=46.1
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHH--------HHHHCCCCEEEEECCEEEEEECCCCCEEECCC--CCCCCCCEEEE
Q ss_conf 589988657999947877438999999--------99977991279984648999889973742367--78876633699
Q gi|254780662|r 80 INPSGISISIITVIVDNIPFLYQSIIG--------EIVARCRNLTMAVHPVFTKDKNCDWQLYSPES--CGIAQKQISLI 149 (1576)
Q Consensus 80 ~~gw~s~~tvi~iv~dD~PfLvDSv~~--------~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~--~~~~~~~ES~I 149 (1576)
.++.....++--..+++.|+||+|=.. +-.... ....+.-|++.++-+....|.=+.. ..-...+||+.
T Consensus 46 y~~~~~~~sv~v~N~~~~p~LvQswvd~~~~~~~~~~~~~~-~PFivtPPlfRl~p~~~~~lRI~~~~~~~LP~DRESlF 124 (245)
T PRK11385 46 FPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVP-APLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLF 124 (245)
T ss_pred ECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC-CCEEECCCEEEECCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 75999478999995899967999861478655677765677-99897698589889995179999658888998711699
Q ss_pred EEEECCCCHH
Q ss_conf 9995799989
Q gi|254780662|r 150 QIHCLKITPE 159 (1576)
Q Consensus 150 ~Ieidr~~~e 159 (1576)
++-+-.+.+.
T Consensus 125 ~lnv~~IP~~ 134 (245)
T PRK11385 125 ELSIASVPSG 134 (245)
T ss_pred EEECCCCCCC
T ss_conf 9970137998
No 173
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=25.96 E-value=25 Score=11.22 Aligned_cols=17 Identities=18% Similarity=0.712 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHCCEEE
Q ss_conf 88999999997289188
Q gi|254780662|r 207 VEALTFLNWLNEDNFQF 223 (1576)
Q Consensus 207 ~Ea~aFL~WL~ddhFtF 223 (1576)
.|+++|++|+...+|++
T Consensus 153 PEt~Avm~w~~~~~FvL 169 (372)
T cd03868 153 PETVAMMKWIRSNPFVL 169 (372)
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 06999999986289249
No 174
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=25.95 E-value=25 Score=11.21 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHC
Q ss_conf 46789999999999808996548645996058863324431112766208999739436867778813798999999966
Q gi|254780662|r 928 TARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDS 1007 (1576)
Q Consensus 928 TarGaw~~v~rhfrelg~D~q~~~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~l 1007 (1576)
||.-|.--|..||.++|+|+.... |+|=+-.||+..- -.|++|.--.+-+.+--+ .--.+|+||-.+
T Consensus 146 Tayaa~r~Vl~~~~~lGidlsqat---vaivGa~G~Ia~~------Iar~la~~~~~~~ll~r~----aea~~rq~l~~l 212 (351)
T COG5322 146 TAYAACRQVLKHFAQLGIDLSQAT---VAIVGATGDIASA------IARWLAPKVGVKELLLRD----AEARNRQRLTLL 212 (351)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHCE---EEEECCCCHHHHH------HHHHHCCCCCEEEEECCC----HHHHHHHHHHHC
T ss_conf 028988899999998586877785---7872478548999------998763466779986351----876414665532
Q ss_pred C
Q ss_conf 8
Q gi|254780662|r 1008 P 1008 (1576)
Q Consensus 1008 p 1008 (1576)
+
T Consensus 213 ~ 213 (351)
T COG5322 213 Q 213 (351)
T ss_pred C
T ss_conf 0
No 175
>pfam02582 DUF155 Uncharacterized ACR, YagE family COG1723.
Probab=25.95 E-value=25 Score=11.21 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 50078999999997500651799999999999848988243059998999999977899982899999999999999998
Q gi|254780662|r 1185 RNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQL 1264 (1576)
Q Consensus 1185 ~~n~~Q~~~ls~~~~~~~~~~~~~~rli~~Le~~g~Ldr~~E~LP~~~~l~~r~~~g~gltrpelavLlay~K~~l~~~l 1264 (1576)
.+.-.|+.+|+.-+..-...++....+.+.|++.|+++. +.+++..... -++..-..+.+.-++
T Consensus 76 S~~LaqSv~L~~~E~~v~~~~~~~~~l~~~L~~~G~~~~------~rk~l~k~~G----------~l~~~r~~inl~~~i 139 (174)
T pfam02582 76 SHALAQSVKLSVFEEQVDNLLEETEPIPEELAKTGKLNL------SRKELLKLIG----------ELLSLRHRINLYSDL 139 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHH----------HHHHHHHHHHHCCCC
T ss_conf 999999999999999999999998888999985698787------8999999999----------999999999711334
Q ss_pred HCC-C-CCCCHHHHHH---HHHHCC
Q ss_conf 457-9-9984789999---888399
Q gi|254780662|r 1265 LDS-T-LIDDPFFFSI---LLSYFP 1284 (1576)
Q Consensus 1265 ~~s-~-l~dd~~~~~~---l~~yfP 1284 (1576)
+++ | ++++|.+.+. +.+||=
T Consensus 140 lD~Pd~~We~~~le~ly~~l~~~le 164 (174)
T pfam02582 140 LDTPDFFWDEPELEPLYLALREYLE 164 (174)
T ss_pred CCCCHHHCCCCCHHHHHHHHHHHCC
T ss_conf 5695431377318999999999858
No 176
>pfam07712 SURNod19 Stress up-regulated Nod 19.
Probab=25.89 E-value=25 Score=11.20 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEEE-ECHHHCCCCCCCCCCEEEEEECCCEEEEEEEC
Q ss_conf 3058988636886-39577788888878569999838657998405
Q gi|254780662|r 737 FQKNQDDIALVFK-FDSRKINSVGTDELHREIFVYGVEVEGVHLRC 781 (1576)
Q Consensus 737 y~~~~~~~~lsfk-ld~~~i~~~p~p~P~~eifv~sp~~eGvHlR~ 781 (1576)
|..+-++-+|++| |+...+++-..|.|.+|.|.|.=-|+-.|.+-
T Consensus 31 ~didfPrGhia~ksFnAEVVDe~G~pVPL~etYLHHWvv~~Y~~~k 76 (382)
T pfam07712 31 YDIDFPRGHIGLKAFDAEVVDEAGKPIPLHETYLHHWIVVRYHQRK 76 (382)
T ss_pred ECCCCCCCCEEEEECCCEEECCCCCCCCHHHHEEEEEEEEEECCCC
T ss_conf 4156887714787404278703797512134002227766640335
No 177
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=25.82 E-value=25 Score=11.20 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 38986799817788832-68999999988089985011056999988431011467899999999998089965486459
Q gi|254780662|r 876 DGNDPYFVVAADKGTAT-FSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTV 954 (1576)
Q Consensus 876 d~~d~ylvvaaDkgTa~-fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTv 954 (1576)
++|.-++.|.+-.|-.. +| +-+-+. -|.|+ .|+..+|-.+.+++|-.+.-- .+
T Consensus 137 ~gd~~~i~v~~KGGGsen~s-------~~~mL~--------P~~g~---------egi~~fVle~v~~aG~~~CPP--~i 190 (299)
T PRK08230 137 DSDDAEIEVYMAGGGCTLPG-------RAKVLM--------PGEGY---------EGVVKFVFDVITSYGVNACPP--LL 190 (299)
T ss_pred CCCEEEEEEEECCCCCCHHH-------HHHHCC--------CCCCH---------HHHHHHHHHHHHHCCCCCCCC--CE
T ss_conf 99838999973256635177-------874018--------76457---------889999999999608889998--55
Q ss_pred EEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 9605886332443111276620899973943686777881379899999996
Q gi|254780662|r 955 AGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576)
Q Consensus 955 vgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576)
+|||= |--|--.|+++|.. |.--+| .++|||....-|. +|.+
T Consensus 191 vGVGI--GGt~e~a~~laK~A-llR~i~------~~~~~~~~a~lE~-eLle 232 (299)
T PRK08230 191 VGVGI--ATSVETAALLSKKA-ILRPIG------SRNPNPRAAELEL-RLEE 232 (299)
T ss_pred EEEEE--CCCHHHHHHHHHHH-CCCCCC------CCCCCHHHHHHHH-HHHH
T ss_conf 89974--68899999999997-133226------7999767999999-9999
No 178
>KOG1707 consensus
Probab=25.47 E-value=26 Score=11.15 Aligned_cols=51 Identities=22% Similarity=0.179 Sum_probs=25.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9963998999999999999998818--888989999999714799999999998752
Q gi|254780662|r 631 IMLTDLRVYEISVLRSYARYLRQAS--VTWSQNFIARVLSKNPTISQLLFSLFRYRF 685 (1576)
Q Consensus 631 v~~~~l~~r~v~~lra~~~yl~Q~~--~~~s~~~i~~~l~~~p~~~~~l~~~F~~rF 685 (1576)
|....++..++.=+= |+-|-. .|-|.-|-++.=.--|...+.|.+.|..-+
T Consensus 153 iecSA~~~~n~~e~f----YyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D 205 (625)
T KOG1707 153 IECSALTLANVSELF----YYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISD 205 (625)
T ss_pred HHHHHHHHHHHHHHH----HHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 765465441137765----45442052357644354424465899999999981112
No 179
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=25.41 E-value=12 Score=14.13 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=5.6
Q ss_pred CEEEEEEEEC
Q ss_conf 3369999957
Q gi|254780662|r 145 QISLIQIHCL 154 (1576)
Q Consensus 145 ~ES~I~Ieid 154 (1576)
.-+-|+|..+
T Consensus 102 ~l~k~f~~FP 111 (216)
T TIGR00091 102 SLSKVFLNFP 111 (216)
T ss_pred CEEEEEEECC
T ss_conf 0456888778
No 180
>TIGR02264 gmx_para_CXXCG Myxococcus xanthus double-CXXCG motif paralogous family; InterPro: IPR011750 This entry consists of at least 10 paralogous proteins from Myxococcus xanthus that lack detectable sequence similarity to any other protein family. An imperfectly conserved CXXCG motif, a probable binding site, appears twice in the multiple sequence alignment..
Probab=25.26 E-value=26 Score=11.12 Aligned_cols=67 Identities=9% Similarity=-0.046 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHH-HHHHHHHHCHHH---HHH------HHHH------------------HCCCCCCCCHHHHHHCCHHHH
Q ss_conf 877737989999-999999854327---799------9975------------------011100489788652798899
Q gi|254780662|r 460 GEISHPSQESLE-EGVRSIVACWED---KFY------KSAG------------------DGVPRFIFSQTFRDVFSPEKA 511 (1576)
Q Consensus 460 ~~~~~vD~~~LE-~~i~~~~rsW~D---~L~------~al~------------------~~~~~~aFp~~Yre~f~p~~A 511 (1576)
-+.|-||.+.|- +........|.+ -|. |.+. .+.....|-.-|-.+-+ .-
T Consensus 46 ~~YPcVDLsslp~~e~~~~~~PrP~qalp~E~f~RLRE~vRP~aPPgA~LePGT~fGP~~G~A~GrFG~l~~Q~~~--l~ 123 (247)
T TIGR02264 46 LAYPCVDLSSLPKDERKKLEEPRPEQALPFEEFSRLREQVRPLAPPGALLEPGTQFGPLVGKASGRFGDLALQAWS--LL 123 (247)
T ss_pred CCCCCHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCEEEEECCCCCCHHHHCCC--HH
T ss_conf 3267210230557888654057743356778999998750567887656788875146025520465333532456--56
Q ss_pred HHHHHHHHHCCCCCCCE
Q ss_conf 99999997323788615
Q gi|254780662|r 512 VEDLPYIISCAEGKEKL 528 (1576)
Q Consensus 512 v~Di~~le~l~~~~~~~ 528 (1576)
..+++.||+|.+.+...
T Consensus 124 ~~r~eALE~L~~~GvRG 140 (247)
T TIGR02264 124 LIRREALERLRAAGVRG 140 (247)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 77699999998741344
No 181
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=25.26 E-value=26 Score=11.12 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCCHHHHHHCCCCCC-CCCH--HHHHHHHCCCCCEEECCCCCCCEECCCCCC-CCCCCCCCCCCEECCCCCEEEEEEEEC
Q ss_conf 179899987098855-4288--899986303653044338742111268986-200152100000025883046899855
Q gi|254780662|r 1035 QLTPEAVAVIGISKQ-IATP--SEIISAILMASVDLLWFGGIGTYIRAPREN-NADIGDKGNNILRVTADKVRAKVIGEG 1110 (1576)
Q Consensus 1035 ~ls~~~~~~l~~~~~-~~~p--~eli~~iL~a~vDLlw~gGiGTYvka~~e~-~~~vgd~and~~rv~g~~lr~kvi~EG 1110 (1576)
||...+.+.+|++-. ...+ +.+|.+++--.+|+-|.|+- .|+.|.... +.++=-.. +..+|..--+.+++=.
T Consensus 56 pl~~~L~~~lG~~V~~~~a~dy~~vieal~~g~~D~A~~~~~-a~~~a~~~~~~~e~~~~~---~~~dg~~~Y~S~~i~~ 131 (299)
T COG3221 56 PLADYLEKELGIPVEFFVATDYAAVIEALRAGQVDIAWLGPS-AYVEAVDRALAGEPLAQT---VQKDGSPGYYSVIIVR 131 (299)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEEECCCH-HHHHHHHHCCCCCCEEEE---ECCCCCCCEEEEEEEE
T ss_conf 699898898699543572576899999985896107741857-789986412454201332---1258986517899992
Q ss_pred CCCCCCHHHHHHHHHCCCEE
Q ss_conf 51030767899999739868
Q gi|254780662|r 1111 ANLGLTQQARVVYSLNGGRI 1130 (1576)
Q Consensus 1111 ~NLg~Tq~~Rie~a~~Gg~i 1130 (1576)
.+-+++-.. .++|-++
T Consensus 132 ~ds~i~sl~----dlkgk~~ 147 (299)
T COG3221 132 ADSPIKSLE----DLKGKRF 147 (299)
T ss_pred CCCCCCHHH----HHCCCEE
T ss_conf 799743378----8269967
No 182
>PRK09918 putative periplasmic chaperone protein; Provisional
Probab=25.19 E-value=26 Score=11.11 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=43.0
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHH
Q ss_conf 8998865799994787743899999999977991279984-648999889973742367788766336999995799989
Q gi|254780662|r 81 NPSGISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVH-PVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPE 159 (1576)
Q Consensus 81 ~gw~s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~H-Pvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e 159 (1576)
++.+...|+---.+++.|+||.|-...... .....+++. |++.++-++...|.=+...+....+||+.++-+..+.+.
T Consensus 36 ~~~~~~~sv~v~N~~~~p~Lvqswi~~~~~-~~~~~FivtPPlfRlep~~~q~lRii~~~~~P~drEslf~lnv~~IPp~ 114 (230)
T PRK09918 36 EESDGEGSINVKNTDSNPILLYTTLVDLPE-DKSKLLLVTPPVARVEAGQSQQVRFVLKKGSPLNTERLLRVSFEGVPPK 114 (230)
T ss_pred ECCCCEEEEEEEECCCCCEEEEEEEECCCC-CCCCCEEECCCEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCC
T ss_conf 489966899999299994799999871898-7768779769849988998248999918999987169999999714998
No 183
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.18 E-value=26 Score=11.10 Aligned_cols=157 Identities=21% Similarity=0.208 Sum_probs=92.2
Q ss_pred CEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 03053898679981778883268999999988089985011056999988431011467899999999998089965486
Q gi|254780662|r 872 TVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTP 951 (1576)
Q Consensus 872 vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~ 951 (1576)
|...-.+.-.|+|-+|--..|+-|+-+..-++-| .-.-+++|..+-|| -+....+.+.|++++.
T Consensus 116 va~v~~~p~~l~v~~~s~~~t~~dlv~~~k~~p~---~v~~~~~g~Gs~dh-----------l~~~~~~k~~Gi~~~~-- 179 (319)
T COG3181 116 VASLVSDPGVLVVRADSPYKTLKDLVAYAKADPG---SVIGGGSGLGSADH-----------LAGALFAKAAGIKITY-- 179 (319)
T ss_pred HHHEECCCCEEEEECCCCCCCHHHHHHHHHHCCC---EEEECCCCCCCHHH-----------HHHHHHHHHHCCCEEE--
T ss_conf 3311136615998178873669999999985998---08954788895889-----------9999999973896257--
Q ss_pred EEEEEECCCCCCCCCCHH-------------HCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 459960588633244311-------------1276620899973943686777881379899999996689870038978
Q gi|254780662|r 952 FTVAGVGDMSGDVFGNGM-------------LLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRK 1018 (1576)
Q Consensus 952 fTvvgiGdmsGDVfGNgm-------------Lls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~ 1018 (1576)
+...|-|.+.=|+-||-+ ..|-++|+++.|.+.---.=|| . -++.| +-||.-
T Consensus 180 Vpy~g~gea~taLlgg~v~a~~~~~se~~~~vksG~lr~Lav~s~eRl~~~pd--v-PT~~E------------~G~~~~ 244 (319)
T COG3181 180 VPYKGGGEALTALLGGHVDAGSTNLSELLSQVKSGTLRLLAVFSEERLPGLPD--V-PTLKE------------QGYDVV 244 (319)
T ss_pred EEECCCCHHHHHHHCCCEEEEECCHHHHHHHHCCCCEEEEEEECHHHCCCCCC--C-CCHHH------------CCCCEE
T ss_conf 74168648789986086654436712435563057467877534310677999--9-98676------------387546
Q ss_pred HCCCCCEEEEEC-------------CCCCCCCHHHHHH---CCCCCCCCCHHHHHHHH
Q ss_conf 717897089821-------------4442179899987---09885542888999863
Q gi|254780662|r 1019 VLSKGGMIISRK-------------EKAVQLTPEAVAV---IGISKQIATPSEIISAI 1060 (1576)
Q Consensus 1019 liS~gGgv~~r~-------------~k~i~ls~~~~~~---l~~~~~~~~p~eli~~i 1060 (1576)
.+--=|||-.- -|.+--||+.++. .++....++|+||-..|
T Consensus 245 -~~~wrgvfap~g~~~e~~~~~~~a~kk~l~s~e~~~~~~~~~~~~~~~~~eel~a~i 301 (319)
T COG3181 245 -MSIWRGVFAPAGTPDEIIAKLSAALKKALASPEWQKRLKELGLVPSYLTGEELKAYI 301 (319)
T ss_pred -EEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf -644358980799999999999999999863988999998558887557989999999
No 184
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.11 E-value=26 Score=11.09 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCE-EEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999972984-787643227763899999971798777379899999999998
Q gi|254780662|r 424 KIGNYLSEVCEGH-VAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIV 478 (1576)
Q Consensus 424 rIq~~L~~al~g~-v~f~t~~sEs~LARvHfiir~~~~~~~~vD~~~LE~~i~~~~ 478 (1576)
.|.++|..+++-. ++-.-..+..|..|++=-++.-+ .|..+...+++-+.++.
T Consensus 4 ~i~~il~~a~~~~aSDiHL~~G~pp~~Ri~G~l~~~~--~p~lt~~~~~~l~~~il 57 (353)
T COG2805 4 DIEEILAEAVKNGASDLHLSAGLPPRIRIDGELRPIN--YPPLTAEDVQSLLREIL 57 (353)
T ss_pred CHHHHHHHHHHCCCCCHHHCCCCCCEEEECCCEEECC--CCCCCHHHHHHHHHHHH
T ss_conf 6999999998569870111269993597568065568--99899899999999985
No 185
>KOG2266 consensus
Probab=25.03 E-value=26 Score=11.08 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=6.3
Q ss_pred CCCHHHHHHHHHHHHCCC
Q ss_conf 883268999999988089
Q gi|254780662|r 889 GTATFSDTANILAQEAKF 906 (1576)
Q Consensus 889 gTa~fsD~An~ia~~~gf 906 (1576)
+||||+||--.+...|+|
T Consensus 539 ntaTm~dIlKkl~~~f~~ 556 (594)
T KOG2266 539 NTATMKDILKKLYAKFPI 556 (594)
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 053699999999874784
No 186
>pfam02078 Synapsin Synapsin, N-terminal domain.
Probab=25.00 E-value=22 Score=11.69 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCEEEEEEECC
Q ss_conf 733100367764899987869
Q gi|254780662|r 285 VISVIYRRTYMDHIGIKHFDE 305 (1576)
Q Consensus 285 ~rS~VHR~aylDyIgVK~fDa 305 (1576)
..+.|+|+=.||+|.|++.-.
T Consensus 63 ~gtkvvRsFkPDFvLvRQ~~~ 83 (105)
T pfam02078 63 NGTKVVRSFKPDFVLVRQHAF 83 (105)
T ss_pred CCCEEEECCCCCEEEEECCCC
T ss_conf 882464225898999961434
No 187
>KOG2825 consensus
Probab=24.79 E-value=26 Score=11.05 Aligned_cols=97 Identities=29% Similarity=0.315 Sum_probs=51.3
Q ss_pred EEEEECCCC---CCHHHHHHHHHHHHC----------CCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 799817788---832689999999880----------8998501105699998843101146789999999999808996
Q gi|254780662|r 881 YFVVAADKG---TATFSDTANILAQEA----------KFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDI 947 (1576)
Q Consensus 881 ylvvaaDkg---Ta~fsD~An~ia~~~----------gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~ 947 (1576)
|++||---| |-.=+-+|...|+-+ -+-+-|||.--= .+-.-|.-|.-..-| |.|||
T Consensus 21 wifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkf-tk~pt~V~Gf~nLfA----------MEIDp 89 (323)
T KOG2825 21 WIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKF-TKTPTKVEGFENLFA----------MEIDP 89 (323)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCCHHHHEE----------EECCC
T ss_conf 9997676776765312689999861688647861685311678888775-179830357223102----------32287
Q ss_pred CCCCEEEEEECCCCCCCCC---------CHHHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 5486459960588633244---------3111276620899973943686777881379899999996
Q gi|254780662|r 948 QSTPFTVAGVGDMSGDVFG---------NGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFD 1006 (1576)
Q Consensus 948 q~~~fTvvgiGdmsGDVfG---------NgmLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~ 1006 (1576)
. +++|+|++--++ -||+..- +.+| |--|-+.||+|-.+|..
T Consensus 90 ~------~e~~~~~~m~~~~~~n~~~~g~g~l~e~----~~~~--------Pgideamsfae~~klvk 139 (323)
T KOG2825 90 N------VEMGDMPEMFGNAANNEGSDGKGMLQEL----ANAF--------PGIDEAMSFAEVMKLVK 139 (323)
T ss_pred C------HHHHHHHHHHHCCCCCCCCCCHHHHHHH----HHCC--------CCHHHHHHHHHHHHHHH
T ss_conf 2------4441567875300212466523279998----7318--------88057775899998863
No 188
>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]
Probab=24.77 E-value=15 Score=13.17 Aligned_cols=11 Identities=55% Similarity=0.791 Sum_probs=4.0
Q ss_pred CCHHHHHHHHH
Q ss_conf 74389999999
Q gi|254780662|r 97 IPFLYQSIIGE 107 (1576)
Q Consensus 97 ~PfLvDSv~~~ 107 (1576)
.|||+||-.++
T Consensus 100 sPfliDSt~ge 110 (313)
T COG1962 100 SPFLIDSTEGE 110 (313)
T ss_pred CCEEECCCCHH
T ss_conf 86564165067
No 189
>pfam01842 ACT ACT domain. This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Probab=24.67 E-value=26 Score=11.03 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99994787743899999999977991279984
Q gi|254780662|r 89 IITVIVDNIPFLYQSIIGEIVARCRNLTMAVH 120 (1576)
Q Consensus 89 vi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~H 120 (1576)
.+.|.+.|+|=++-.+...|.++|++|..+..
T Consensus 2 ~l~v~~~DrpG~l~~v~~~la~~ginI~~i~~ 33 (66)
T pfam01842 2 VLEVGVPDRPGLLARVFGALADRGINIESISQ 33 (66)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 69997079883799999999877999478997
No 190
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178 Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=24.50 E-value=27 Score=11.01 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHH------------HCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC--EEEEECCCCCCCCCC-CCE
Q ss_conf 672688999886------------31997897449989999999999999840589887--178724765558998-865
Q gi|254780662|r 23 LGLPSFSASAMF------------GEASIDDLEKYTPQMLALTSVVSYDIFAGWDHSSA--CCIDIREVEGINPSG-ISI 87 (1576)
Q Consensus 23 ~~~~~~fa~~~f------------~~~~~eDl~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~v~~p~~~~~gw~-s~~ 87 (1576)
+.-||.||+.|- +..|+ +|..++|.|.++.-++-..||-+-.. .|.==-|+.+.+-|+ |+.
T Consensus 4 A~SPA~fAEeYIveSIWn~~FPPGSiLPA----ERELsElIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNnfWETSGL 79 (275)
T TIGR02812 4 AKSPAGFAEEYIVESIWNNRFPPGSILPA----ERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGL 79 (275)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCHH----HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 88754235443322101643465898724----66575423766303789998876411343658899862762430273
Q ss_pred ----EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEC-CCCHHHHH
Q ss_conf ----7999947877438999999999779912799846489998899737423677887663369999957-99989999
Q gi|254780662|r 88 ----SIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCL-KITPEEAI 162 (1576)
Q Consensus 88 ----tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieid-r~~~e~~~ 162 (1576)
|+|..=.+++|-|||-+..+ |- ..|.|+|--. +.+|++..
T Consensus 80 NILeTL~~LD~~~~P~l~dnLLSA--RT---------------------------------nIS~IYir~A~K~np~~~~ 124 (275)
T TIGR02812 80 NILETLIRLDGESVPSLIDNLLSA--RT---------------------------------NISAIYIRAAFKNNPEESE 124 (275)
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHH--HH---------------------------------CCCHHHHHHHHHCCHHHHH
T ss_conf 578999861877770799999977--64---------------------------------1377889998622835689
Q ss_pred HHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHCCCC----CCC--HHHHHHHHHHHHHCCEEEEE
Q ss_conf 99999999999999999--7---7999999999999985406775----311--48899999999728918810
Q gi|254780662|r 163 EIKKQLIFIIEQLKLVS--Q---DSREMLASLEKMQKSFCHLTGI----KEY--AVEALTFLNWLNEDNFQFMG 225 (1576)
Q Consensus 163 ~L~~~L~~VL~dVr~aV--~---Dw~aM~~rl~~l~~~L~~~~~~----~ee--~~Ea~aFL~WL~ddhFtFLG 225 (1576)
+|-..+-+.++-...+- + .-+|..++++ ++++..... .++ .+|+=+..+..--..++|-+
T Consensus 125 ~~~~~VI~s~e~L~~~~s~~~F~~~SP~~~~~~---~~l~d~~~~D~~~~~~I~~A~~f~~fDY~lf~~LA~~S 195 (275)
T TIGR02812 125 ELIENVIKSLEVLANAESFAEFVEASPLAEKVK---KELEDTSKKDEEKREEILRAEAFTEFDYQLFRGLAFAS 195 (275)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf 999999999999830401799985082689999---87420366576889999878777698899987410013
No 191
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H; InterPro: IPR002856 This family of methyltransferases occurs in both archaea and bacteria. In archaea, members of this family (MtrH) are involved in the energy conservation step of methanogenesis, while in prokaryotes, members of this family whose function has been defined (CmuB) are involved in the metabolism of chloromethane. In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide . Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity . CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin) In bacteria, the pathway of chloromethane utilisation allows the microorganisms that possess it to grow with chloromethane as the sole carbon and energy source. It is initiated by a corrinoid-dependent methyltransferase system involving methyltransferase I (CmuA) and methyltransferase II (CmuB), which transfer the methyl group of chloromethane onto tetrahydrofolate . The methyl group of chloromethane is first transferred by the protein CmuA to its corrinoid moiety, from where it is transferred to tetrahydrofolate by CmuB, thereby yielding methyltetrahydrofolate , . CmuB has methylcobalamin:tetrahydrofolate methyltransferase activity, and catalyzes the conversion of methylcobalamin and tetrahydrofolate to cob(I)alamin and methyltetrahydrofolate. CH3-cob(III)alamin + H4F --> CH3-H4F + cob(I)alamin (H4F = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon compound metabolic process.
Probab=24.50 E-value=15 Score=13.28 Aligned_cols=133 Identities=17% Similarity=0.060 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHCCE-EEEEEEEC-CCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf 999999999999972984-78764322-7763899999971798777379899999999998543277999975011100
Q gi|254780662|r 419 SFVREKIGNYLSEVCEGH-VAFYSSIL-EEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYKSAGDGVPRF 496 (1576)
Q Consensus 419 T~vR~rIq~~L~~al~g~-v~f~t~~s-Es~LARvHfiir~~~~~~~~vD~~~LE~~i~~~~rsW~D~L~~al~~~~~~~ 496 (1576)
.|---++|.-|.+.-|-. +....--+ |+-.-.+-|+.-+.+..+.-+|...=|.+++.+-+.=+=.+.+..
T Consensus 54 AE~Li~~q~el~D~TGnP~~~qi~G~tpEai~~Yldwv~~i~D~~P~l~Dst~ge~r~AAa~~~~E~G~a~r~------- 126 (323)
T TIGR01114 54 AEELIKTQEELSDVTGNPYVVQIFGETPEAIVRYLDWVADITDATPFLIDSTSGEARVAAAKYATEVGLADRA------- 126 (323)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHEEEECCCCEEEECCHHHHHHHHHHHCCCCCHHHCE-------
T ss_conf 9998742121035687960453227887898877453031206885377544145788886420103500001-------
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHCCCCCCC--EEEEECCCCCC-EEEEEEEECCC-CCCHHHHHHHHHHCCCE
Q ss_conf 4897886527988999999999732378861--56650378887-07999974798-76698988889856957
Q gi|254780662|r 497 IFSQTFRDVFSPEKAVEDLPYIISCAEGKEK--LRVCFENKEDG-KVQIKIFHARG-PFSLSKRVPLLENLGFT 566 (1576)
Q Consensus 497 aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~--~~~~~~~~~~~-~~~lk~~~~~~-~~~Ls~~~p~l~~~G~~ 566 (1576)
-|..--+-.|=+-++.|.+++.- -++.+-+.++. +=+++|...|. ...=--.|-+=+..|.+
T Consensus 127 --------iyNSiN~s~e~~E~~~l~esd~~aaIVLaFnpmDptVeG~i~il~~G~e~~~~KGmLe~a~~cGI~ 192 (323)
T TIGR01114 127 --------IYNSINASIEEEEIQVLKESDLEAAIVLAFNPMDPTVEGKIDILEEGGEGTSDKGMLEIAEECGIK 192 (323)
T ss_pred --------EEEHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCEECEEEEEECCCCCCCCCCHHHHHHHCCCC
T ss_conf --------110101220355799876157440456402788883102255674276433341078999871888
No 192
>PHA00684 hypothetical protein
Probab=24.44 E-value=27 Score=11.00 Aligned_cols=101 Identities=22% Similarity=0.364 Sum_probs=47.6
Q ss_pred CCCCEEEEEECCCEEEEEEECC-CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 8785699998386579984054-233040420088578888899989984532874288875327871689988998999
Q gi|254780662|r 761 DELHREIFVYGVEVEGVHLRCG-KIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEI 839 (1576)
Q Consensus 761 p~P~~eifv~sp~~eGvHlR~g-~vARGGlRwSdR~edfrtEvlgL~kaQ~vKN~vIvp~GaKGgfv~k~~~~~~~r~~~ 839 (1576)
.-|..+|||+|...+|.|--+. ++|+ +.+|-.+-| ..|--|-=+. +|+- |...-
T Consensus 12 ~~p~~~IFVFGSNl~G~H~~GAA~~A~--------------~~~GA~~G~--------g~G~~GqSYA--IPT~-d~~~~ 66 (143)
T PHA00684 12 AAPAGHIFVFGSNLRGAHLGGAAAAAH--------------SEYGAAWGV--------SEGRTGHAYA--IPTV-AVTVV 66 (143)
T ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHH--------------HHHCHHHCC--------CCCCCCCCCC--CCCC-CCCCC
T ss_conf 899870899558854453531899999--------------984825302--------6477886102--3313-64435
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCH--HHHHHHHHH
Q ss_conf 99999999999989887762568884028831030538986799817788832--689999999
Q gi|254780662|r 840 IKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTAT--FSDTANILA 901 (1576)
Q Consensus 840 ~~e~~~~y~~fi~~lLditDN~~~g~vv~p~~vv~~d~~d~ylvvaaDkgTa~--fsD~An~ia 901 (1576)
.....+.-+.+|+-+++-+-| +| +-.|+|-.---|-|- -+|||.-..
T Consensus 67 ~~m~l~~I~~yV~~Fi~yA~~-------Hp--------~~~FlVT~IGCGiAG~k~~eIAPlF~ 115 (143)
T PHA00684 67 SRLSLPAIGAAVERFIAYATA-------HP--------HLHFFITRVGCGIAGHLDADIAPMFR 115 (143)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-------CC--------CCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 656899999999999999997-------99--------85799853204655788899889985
No 193
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, putative; InterPro: IPR005932 The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline. 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase.; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=24.44 E-value=27 Score=11.00 Aligned_cols=181 Identities=11% Similarity=0.166 Sum_probs=94.1
Q ss_pred CCCCCEEECCCCCCCCC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH
Q ss_conf 89973742367788766--336999995799989999999999999999999997799----------------999999
Q gi|254780662|r 128 NCDWQLYSPESCGIAQK--QISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQDSR----------------EMLASL 189 (1576)
Q Consensus 128 D~~G~L~~v~~~~~~~~--~ES~I~Ieidr~~~e~~~~L~~~L~~VL~dVr~aV~Dw~----------------aM~~rl 189 (1576)
|-.+++.+++||+.++- +.|.+-+| +=.+.|+--..|-+.|. .|+.|=
T Consensus 44 eTe~kI~SiNPcd~sevvG~v~kas~e--------------~Ae~Al~~A~kAFe~Wkkt~~~eRa~iL~kAAai~~rRr 109 (518)
T TIGR01237 44 ETEAKIDSINPCDKSEVVGKVAKASVE--------------DAEQALQAAKKAFEEWKKTDVEERAAILLKAAAILKRRR 109 (518)
T ss_pred ECCCCEEEECCCCCCCCCCCEEEECHH--------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 115620231788873101101000166--------------689999999985053247898899999999999987526
Q ss_pred HHHHHHHHH-----CCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECC-CCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998540-----677531148899999999728918810479984137-77513632288741100385311254101
Q gi|254780662|r 190 EKMQKSFCH-----LTGIKEYAVEALTFLNWLNEDNFQFMGMRYHPLVAG-QKQVKLDHDMPTELGILRDSSIVVLGFDR 263 (1576)
Q Consensus 190 ~~l~~~L~~-----~~~~~ee~~Ea~aFL~WL~ddhFtFLGyReY~l~~~-~~~~~L~~~~~sgLGILR~~~~~~~~~~~ 263 (1576)
+++.+-+.. .+...-|.+||+|||++-++.-.-+=|+..-....- |++..+.- .+.|.|+-=.|. +
T Consensus 110 hE~~Al~~~EvGK~~~eADaevaEAIDF~eYYAr~m~~laGf~~~~~~~~eGE~N~y~y-~P~Gv~vvIsPW-------N 181 (518)
T TIGR01237 110 HELSALLVLEVGKIYAEADAEVAEAIDFLEYYAREMIKLAGFKSKEVLDIEGEKNRYVY-IPLGVAVVISPW-------N 181 (518)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE-CCCCCEEEECCC-------H
T ss_conf 77777888750788521234488888899999999998604788634447886244154-254127873871-------2
Q ss_pred CCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECHHHHCCCHHHCCHHHHHHHHHHH
Q ss_conf 89788876126981899844873310036776489998786999887787885210047626885546208999999999
Q gi|254780662|r 264 VTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGIKHFDERGNLIGELHVVGFFTRLVYSQRASKIPLLREKIVKVQN 343 (1576)
Q Consensus 264 l~~~~r~~~~~~~~LivtKan~rS~VHR~aylDyIgVK~fDa~G~viGE~RFlGLFTSsAY~~sv~~IPiLRrKV~~VL~ 343 (1576)
.|-.+-. .- .-..+ -.||.+ .--++.+-|+|-.|+-.||.
T Consensus 182 Fp~AI~v----------G~--tvApi---------------VtGNcv-------------vlKPAe~~~vIAak~veiL~ 221 (518)
T TIGR01237 182 FPMAIAV----------GM--TVAPI---------------VTGNCV-------------VLKPAEAATVIAAKIVEILE 221 (518)
T ss_pred HHHHHHH----------HH--HHHHH---------------HHCCEE-------------EECCCCCCHHHHHHHHHHHH
T ss_conf 5899998----------65--78677---------------618805-------------87167762158999999999
Q ss_pred HCCCCCCCC-----CHHHHHHHHHCCCHHHHH
Q ss_conf 748898887-----879999987228948860
Q gi|254780662|r 344 LLNFHPNSH-----SSRMLQNTLEFYPRDELF 370 (1576)
Q Consensus 344 ~sGf~p~SH-----sgK~L~~ILEtyPRDELF 370 (1576)
.||+++|=- +|+..=+-|-+.|...|+
T Consensus 222 eaGlP~GV~qfvPG~Gs~VG~ylv~Hpkt~lI 253 (518)
T TIGR01237 222 EAGLPKGVLQFVPGKGSEVGEYLVDHPKTRLI 253 (518)
T ss_pred HCCCCCCCEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 64789763050179861203303678861178
No 194
>KOG2285 consensus
Probab=24.42 E-value=27 Score=11.00 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCCHHHHHHHH-----HHHHHHHHHHHCCCCCCCHHHHHHHHH--HCCH
Q ss_conf 98289999999-----999999999845799984789999888--3998
Q gi|254780662|r 1244 LSRPEIAILLA-----YAKLKLSEQLLDSTLIDDPFFFSILLS--YFPR 1285 (1576)
Q Consensus 1244 ltrpelavLla-----y~K~~l~~~l~~s~l~dd~~~~~~l~~--yfP~ 1285 (1576)
.|.-++|||.| +-|+.+-.--++++|||-. +.+.|-. .||+
T Consensus 591 vTTFQmAVLFawNqR~hdKIS~EnLrLATELPDaE-LrRTLwSLVAfPK 638 (777)
T KOG2285 591 VTTFQMAVLFAWNQRAHDKISLENLRLATELPDAE-LRRTLWSLVAFPK 638 (777)
T ss_pred EEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHH-HHHHHHHHHHHHH
T ss_conf 20346778887254533311467665540299889-9999999875054
No 195
>TIGR02152 D_ribokin_bact ribokinase; InterPro: IPR011877 This entry describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family. ; GO: 0004747 ribokinase activity, 0006014 D-ribose metabolic process.
Probab=24.01 E-value=27 Score=10.94 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=18.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 865799994787743899999999977991279984
Q gi|254780662|r 85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVH 120 (1576)
Q Consensus 85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~H 120 (1576)
+..+.|.-|.+|+ .=+..+--+.+.|++...+.+
T Consensus 53 a~V~mig~VG~D~--~G~~~~~~l~~~Gi~t~~v~~ 86 (303)
T TIGR02152 53 AEVSMIGKVGDDA--FGDELLENLKKEGIDTEYVKT 86 (303)
T ss_pred CCEEEEEEECCCH--HHHHHHHHHHHCCCCCCCEEE
T ss_conf 3617898634877--899999999874861021167
No 196
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.99 E-value=27 Score=10.93 Aligned_cols=10 Identities=30% Similarity=0.332 Sum_probs=4.0
Q ss_pred CCCCHHHHHH
Q ss_conf 7989889988
Q gi|254780662|r 1161 GRLTLENRNK 1170 (1576)
Q Consensus 1161 g~lt~~~Rn~ 1170 (1576)
+.||.+|+.+
T Consensus 38 ~~LT~EQQa~ 47 (139)
T PRK11546 38 APLTTEQQAA 47 (139)
T ss_pred CCCCHHHHHH
T ss_conf 9889999999
No 197
>PHA00675 hypothetical protein
Probab=23.97 E-value=27 Score=10.93 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=4.2
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999988188
Q gi|254780662|r 646 SYARYLRQASV 656 (1576)
Q Consensus 646 a~~~yl~Q~~~ 656 (1576)
++|+|-|-..+
T Consensus 58 kICqYeRR~Qt 68 (78)
T PHA00675 58 KICRYERRGQF 68 (78)
T ss_pred HHHHHHHHCCC
T ss_conf 99889882467
No 198
>pfam02082 Rrf2 Transcriptional regulator. This family is related to pfam001022 and other transcription regulation families (personal obs: Yeats C).
Probab=23.61 E-value=27 Score=10.88 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=5.8
Q ss_pred CCCCEEEEECCCC
Q ss_conf 8753278716899
Q gi|254780662|r 819 VGAKGGFYPKRLP 831 (1576)
Q Consensus 819 ~GaKGgfv~k~~~ 831 (1576)
-|++|||.+.++|
T Consensus 58 rG~~GGy~L~k~~ 70 (82)
T pfam02082 58 RGPGGGYRLARPP 70 (82)
T ss_pred CCCCCCCCCCCCH
T ss_conf 8999881134898
No 199
>pfam07446 GumN GumN protein. This family contains the bacterial protein GumN (approximately 330 residues long). Note that many members of this family are hypothetical proteins.
Probab=23.42 E-value=28 Score=10.85 Aligned_cols=99 Identities=16% Similarity=0.030 Sum_probs=58.0
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 88839989998889997708317--------9999999999988673523899988870999999999999999981937
Q gi|254780662|r 1279 LLSYFPRQLSELYSEDIMNHQLR--------RAIVATVLANEIINKGGSCFVVSLAKETGSSTEDVIRSAVIAYAGYELE 1350 (1576)
Q Consensus 1279 l~~yfP~~l~~~f~~~i~~H~Lr--------REIIaT~laN~iVNr~G~tF~~rl~e~tGa~~~~i~rAy~~a~~if~l~ 1350 (1576)
|.+++|+...+++...+..+.+. -=.++..|++....+.|.. .+.|....-.-+|=..-..|.+++
T Consensus 70 L~~~l~~~~~~~l~~~~~~~g~~~~~~~~~kPw~~~~~L~~~~~~~~g~~------~~~giD~~l~~~A~~~~k~i~~LE 143 (259)
T pfam07446 70 LSDLLSPELYARLAAALAARGLPLAALAKFKPWFAALTLALLALQKLGLS------PEEGVDMYLEKLAKAAGKPVAGLE 143 (259)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHCCCCEECCC
T ss_conf 67868999999999999984999999866998999999999999875998------653878999999998699343356
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999998607858989999999999999999999
Q gi|254780662|r 1351 SLWQEVDKLDNQISGELQNKIYEEIRLIFINLTR 1384 (1576)
Q Consensus 1351 ~l~~~I~aLd~~v~a~~q~~l~~~~~~ll~r~tr 1384 (1576)
..-+++..++ .+|.+.|..++...-+-.+....
T Consensus 144 t~~~ql~~l~-~~~~~~q~~~L~~~l~~~~~~~~ 176 (259)
T pfam07446 144 TVEEQLDLLA-SLPLEEQLAMLRSTLDEIEKGDD 176 (259)
T ss_pred CHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998-29999999999999987864179
No 200
>pfam03634 TCP TCP family transcription factor. This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.
Probab=23.41 E-value=28 Score=10.85 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999997608
Q gi|254780662|r 1470 LVVLDMWSAISVGLG 1484 (1576)
Q Consensus 1470 ~~va~~yf~l~~~l~ 1484 (1576)
..+|.-+|.|.+.||
T Consensus 26 ~~~A~~~f~lq~~LG 40 (123)
T pfam03634 26 AECAARFFDLQDELG 40 (123)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 889999980899877
No 201
>PRK11026 ftsX cell division protein FtsX; Provisional
Probab=23.35 E-value=28 Score=10.84 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 1467899999999998
Q gi|254780662|r 927 ITARGAWETVKRHFRE 942 (1576)
Q Consensus 927 ITarGaw~~v~rhfre 942 (1576)
|-..|+|.||+||.|+
T Consensus 290 lG~lgS~~sv~r~Lr~ 305 (309)
T PRK11026 290 IGWIAAWLATVQHLRH 305 (309)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999875
No 202
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator); InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulphovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis strain PCC 6803 hypothetical protein slr0846. These are small proteins of 12 to 18 kD which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators..
Probab=23.11 E-value=28 Score=10.86 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=29.1
Q ss_pred EEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 974798766989888898569579721544667658887317999981430677666897888999999999997698
Q gi|254780662|r 544 IFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAFKYIFHER 621 (1576)
Q Consensus 544 ~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1576)
|.+.-..+++.||+-.+|...--|- +.. +.. -+.+ ....--+..+|..+.+++..+..+.
T Consensus 67 L~~~~~~I~~~dvv~a~e~~~~~~~---c~~-----~~~-----c~~~-----~~~~C~~~~~w~~~~~~~~~~L~~~ 126 (133)
T TIGR00738 67 LARPPEEITVGDVVRAVEGSLAPVQ---CIG-----GNG-----CHNV-----GEPVCLLHAVWRELEDAIEDVLREI 126 (133)
T ss_pred CCCCHHHCCHHHHHHHHCCCCCHHC---CCC-----CCC-----CCCC-----CCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0775343049888875368510001---445-----788-----8644-----4442258999999999999985277
No 203
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=23.08 E-value=28 Score=10.80 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=26.9
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 99997488988878799999872289488605898999999999
Q gi|254780662|r 340 KVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCEQ 383 (1576)
Q Consensus 340 ~VL~~sGf~p~SHsgK~L~~ILEtyPRDELFQ~s~eeL~~~a~g 383 (1576)
.+|...||++ +...++.+-||.|-|.-++.+|-.+.--+
T Consensus 71 ~iL~~~GlPr-----~~f~~l~d~Fp~dgLVsSP~eEkaR~~~~ 109 (246)
T COG4669 71 EILNQNGLPR-----KKFTTLGDIFPKDGLVSSPTEEKARLNYA 109 (246)
T ss_pred HHHHHCCCCC-----CCCCCHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9998669998-----77774998587656657828999999999
No 204
>KOG3564 consensus
Probab=23.05 E-value=26 Score=11.08 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=7.4
Q ss_pred EEECCCCCCCEEEEE
Q ss_conf 840542330404200
Q gi|254780662|r 778 HLRCGKIARGGLRWS 792 (1576)
Q Consensus 778 HlR~g~vARGGlRwS 792 (1576)
|-|.+.+---|==-|
T Consensus 140 ~k~l~~~~~~gs~lS 154 (604)
T KOG3564 140 NKRLSEIDESGSILS 154 (604)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 864354577765122
No 205
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.94 E-value=28 Score=10.78 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=132.8
Q ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88870799997479876698988889856957972154466765888731799998143067766689788899999999
Q gi|254780662|r 535 KEDGKVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALVEAF 614 (1576)
Q Consensus 535 ~~~~~~~lk~~~~~~~~~Ls~~~p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~~~~~~~~~~~~~~~~~~~~ 614 (1576)
..+.++.|++--++.+=..+.+--.|.+.|..+++-.-|.- . +...+++ ....... +...+.+.++..|.+.-
T Consensus 3 ~~~~~~IL~isCPD~~GIVA~VS~~L~~~ggNI~e~~Qf~D-~----~~~~FFM-Rvef~~~-~~~~~~~~l~~~f~~ia 75 (287)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDD-R----LSGRFFM-RVEFRPE-DEGLDEDALRAGFAPIA 75 (287)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC-C----CCCEEEE-EEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf 88777999998999996099999999968998957625358-9----8880899-9999827-88889999999999988
Q ss_pred HH---HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC
Q ss_conf 99---9769875643569999639989999999999999988188889899999997147999999999987528--887
Q gi|254780662|r 615 KY---IFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNPTISQLLFSLFRYRFD--PSL 689 (1576)
Q Consensus 615 ~~---~~~~~~e~D~~n~Lv~~~~l~~r~v~~lra~~~yl~Q~~~~~s~~~i~~~l~~~p~~~~~l~~~F~~rFd--P~~ 689 (1576)
.. -|.=...+..-+-+++-...+--=..|| |..+.| ==.-.|.-++.+|+++- .+++.|..-|. |-.
T Consensus 76 ~~~~m~w~l~~~~~k~RvaImVSK~~HCL~DLL-----~R~~~G--eL~~eI~~VISNH~dL~-~lae~~~IPF~~iPv~ 147 (287)
T PRK13011 76 AAFGMQWELHDPAARPKVLIMVSKFDHCLNDLL-----YRWRIG--ELPMDIVGVVSNHPDLE-PLAAWHGIPFHHFPIT 147 (287)
T ss_pred HHCCCEEEEECCCCCCEEEEEEECCCCCHHHHH-----HHHHCC--CCCCEEEEEECCCHHHH-HHHHHCCCCEEEECCC
T ss_conf 653967999705678438999968523699999-----997649--86844658734986789-9999769982883788
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCEEEE
Q ss_conf 75204889999999999986303683277-99999999999752228730589886368863957778888887856999
Q gi|254780662|r 690 SDQERGENTKRILGEIDSALLKVPSLDDD-TVLRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINSVGTDELHREIF 768 (1576)
Q Consensus 690 ~~~~r~~~~~~~~~~~~~~l~~V~~ld~d-rilr~~~~~i~atlRTN~y~~~~~~~~lsfkld~~~i~~~p~p~P~~eif 768 (1576)
.+.+.+..+++.+ .|++ .+-| -||-+|+..+...+=..|- + =-.-+-|+.||.-|-.+||..-|
T Consensus 148 -~~~K~e~E~~~~~----~~~~---~~~d~ivla~ym~il~~~~~~~~~-----~--~iinih~s~lP~f~G~~~~~~a~ 212 (287)
T PRK13011 148 -PDTKPQQEAQVLD----VIEE---SGAELVVLARYMQVLSPELCRKLA-----G--RAINIHHSFLPGFKGAKPYHQAY 212 (287)
T ss_pred -CCCCHHHHHHHHH----HHHH---CCCCEEEHHHHHHHCCHHHHHHHC-----C--CCCCCCHHHCCCCCCCCHHHHHH
T ss_conf -7763789999999----9873---397399434488874989998403-----8--01021600115789986799999
Q ss_pred EECCCEEEE--EEECCCCCCCE------EEE--ECCHHHHH-----HHHHHHHHHH--HHCCCCCCC
Q ss_conf 983865799--84054233040------420--08857888-----8899989984--532874288
Q gi|254780662|r 769 VYGVEVEGV--HLRCGKIARGG------LRW--SDRAADYR-----TEVLGLVRAQ--KVKNAVIVP 818 (1576)
Q Consensus 769 v~sp~~eGv--HlR~g~vARGG------lRw--SdR~edfr-----tEvlgL~kaQ--~vKN~vIvp 818 (1576)
-.|-..-|. |.=--++--|- .|. +|..+|+. .|-.-|++|= +..+.|++-
T Consensus 213 ~~gvk~~G~t~H~v~~~lD~Gpii~Q~~~~v~~~~~~~~l~~~g~~~E~~~l~~av~~~~e~rv~v~ 279 (287)
T PRK13011 213 ERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYYPEDLVAKGRDVECLTLARAVKAHIERRVFLN 279 (287)
T ss_pred HCCCCEECCCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 7699687168288057787888568877763999999999999899999999999999976929998
No 206
>pfam11990 DUF3487 Protein of unknown function (DUF3487). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=22.87 E-value=25 Score=11.25 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=6.5
Q ss_pred CCCCCHHHHHHH
Q ss_conf 999828999999
Q gi|254780662|r 1242 VSLSRPEIAILL 1253 (1576)
Q Consensus 1242 ~gltrpelavLl 1253 (1576)
+|+|.+|+-+..
T Consensus 19 rGlT~~El~~~a 30 (122)
T pfam11990 19 RGLTADELGVAA 30 (122)
T ss_pred CCCCHHHHHHHH
T ss_conf 065747999999
No 207
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=22.81 E-value=28 Score=10.76 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=42.7
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCH-HHHHHHH
Q ss_conf 999478774389999999997799127998464899988997374236778876633699999579998-9999999
Q gi|254780662|r 90 ITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITP-EEAIEIK 165 (1576)
Q Consensus 90 i~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~-e~~~~L~ 165 (1576)
+.+.+.|.|=.+-.|...|..+++.|-.+. +.|...| ..+++.+++|...+ +-.++|+
T Consensus 2 L~v~~~D~PGvi~~I~~~L~~~~iNI~~m~-----l~r~~~g-------------~~A~~ii~vD~~v~~~~l~~i~ 60 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQ-----VGRKEKG-------------GIAYMVLDVDSPVPEEVLEELK 60 (71)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCHHHHH-----HCCCCCC-------------CEEEEEEEECCCCCHHHHHHHH
T ss_conf 889943979989999999998597889964-----1236799-------------7589999908989999999997
No 208
>TIGR01086 fucA L-fuculose phosphate aldolase; InterPro: IPR004782 L-fuculose phosphate aldolase converts L-fuculose 1-phosphate to glycerone phosphate + (S)-lactaldehyde. The structure of the class II zinc-ion dependent L-fuculose-1-phosphate aldolase from Escherichia coli has been established at 1.92 A resolution. The homo-tetrameric enzyme has a molecular mass of 4 x 24 kDa and follows C(4) symmetry. The four catalytic centres are located in deep clefts at the interfaces of adjacent subunits. The zinc ion is coordinated by three histidines and one glutamate in an almost tetrahedral arrangement. In contrast to numerous other catalytically competent zinc ions, there is no water molecule in the ligand sphere. Sequence homology searches revealed a significant similarity to the bacterial L-ribulose-5-phosphate 4-epimerase, IPR004661 from INTERPRO .; GO: 0008270 zinc ion binding, 0008738 L-fuculose-phosphate aldolase activity, 0006004 fucose metabolic process.
Probab=22.69 E-value=27 Score=10.95 Aligned_cols=52 Identities=25% Similarity=0.472 Sum_probs=31.8
Q ss_pred CCCCCC---CCCHHHCCCC-CEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 886332---4431112766-20899973943686777881379899999996689870038978
Q gi|254780662|r 959 DMSGDV---FGNGMLLSRK-IQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRK 1018 (1576)
Q Consensus 959 dmsGDV---fGNgmLls~~-i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd~~ 1018 (1576)
|.+|.| |-||||+.+. +-.--.-...=+|+|-| -+|+|-+ ||.|.|...=..
T Consensus 24 GtaGnvsvry~~GmlitPtG~Py~~l~~~~ivy~~~~----G~~ee~k----lPsseW~fhl~~ 79 (214)
T TIGR01086 24 GTAGNVSVRYKDGMLITPTGIPYEKLTEEHIVYVDGN----GKHEEGK----LPSSEWRFHLAV 79 (214)
T ss_pred CCCCCEEEEECCCEEECCCCCCHHHCCCCCEEEEECC----CCCCCCC----CCCHHHHHHHHH
T ss_conf 7633047887185377447775545175525898068----8501135----770356655555
No 209
>KOG1200 consensus
Probab=22.63 E-value=29 Score=10.73 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred EECCCCCCCHHHHHHHHHCCCEEEC
Q ss_conf 8555103076789999973986835
Q gi|254780662|r 1108 GEGANLGLTQQARVVYSLNGGRINS 1132 (1576)
Q Consensus 1108 ~EG~NLg~Tq~~Rie~a~~Gg~int 1132 (1576)
-.||-.|||+-+-.|+++++.|+|.
T Consensus 167 sK~GvIgftktaArEla~knIrvN~ 191 (256)
T KOG1200 167 SKGGVIGFTKTAARELARKNIRVNV 191 (256)
T ss_pred HCCCEEEEEHHHHHHHHHCCCEEEE
T ss_conf 3275553009889988654824767
No 210
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=22.54 E-value=29 Score=10.72 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=7.5
Q ss_pred EEEEEECCCCCCCCC
Q ss_conf 459960588633244
Q gi|254780662|r 952 FTVAGVGDMSGDVFG 966 (1576)
Q Consensus 952 fTvvgiGdmsGDVfG 966 (1576)
.-++|+||||--+-|
T Consensus 331 V~I~GTGGlSHQL~G 345 (444)
T PRK13372 331 VQIWGTGGMSHQLQG 345 (444)
T ss_pred EEEEECCCCCCCCCC
T ss_conf 999945763210377
No 211
>KOG1834 consensus
Probab=22.48 E-value=29 Score=10.71 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=45.3
Q ss_pred CCCCCEEEEECCCCCC--HHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHH-----HHHHHHHHHHCCCCCC
Q ss_conf 3898679981778883--26899999998808998501105699998843101146789-----9999999998089965
Q gi|254780662|r 876 DGNDPYFVVAADKGTA--TFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGA-----WETVKRHFREMDIDIQ 948 (1576)
Q Consensus 876 d~~d~ylvvaaDkgTa--~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGa-----w~~v~rhfrelg~D~q 948 (1576)
.+-=+..++++|-..- .|+--+..+. .+|- -.-|.+-|||-+|+ .|-|-++.|-...-+.
T Consensus 684 lD~Cei~l~g~dld~e~E~l~~~~s~l~-qr~i------------e~t~s~~g~ti~GveS~~~YeeVL~~~rYrn~rp~ 750 (952)
T KOG1834 684 LDYCEIHLQGADLDPEQESLELDASLLQ-QRGI------------EFTNSKAGITIRGVESMQGYEEVLHKVRYRNWRPA 750 (952)
T ss_pred CCCEEEEEECCCCCHHHHHHCCCHHHHH-HCCC------------EEECCCCCEEEECCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 6704799503557800432127787898-6086------------43326453699630066679999988775136725
Q ss_pred ---CCCEEEEEECCCCCCCCCCHHHC
Q ss_conf ---48645996058863324431112
Q gi|254780662|r 949 ---STPFTVAGVGDMSGDVFGNGMLL 971 (1576)
Q Consensus 949 ---~~~fTvvgiGdmsGDVfGNgmLl 971 (1576)
+-.|++ ..--|.|-+-+|....
T Consensus 751 sl~~Rkfrl-~CselnGRy~SNef~v 775 (952)
T KOG1834 751 SLAKRKFRL-QCSELNGRYLSNEFFV 775 (952)
T ss_pred HHHHCEEEE-EEHHHCCEEECCEEEE
T ss_conf 544223478-7154177653123689
No 212
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=22.43 E-value=29 Score=10.70 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=44.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHH
Q ss_conf 86579999478774389999999997799127998464899988997374236778876633699999579998999999
Q gi|254780662|r 85 ISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEI 164 (1576)
Q Consensus 85 s~~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L 164 (1576)
....+|.+..+|.|=..--|.+.+.|+|+.|..+.-... .+ ..-|-|-|.+. +++.++++
T Consensus 6 ~~~~vlSvlV~N~pGVL~RV~gLFsrRgyNIeSL~v~~t-----e~-------------~~~SRiTivv~--~d~~leQi 65 (96)
T PRK08178 6 HDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI-----QD-------------SDKSRIWLLVN--DDQRLEQM 65 (96)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEC-----CC-------------CCCEEEEEEEC--CCCCHHHH
T ss_conf 770899999957787899998887505668120788513-----89-------------98108999988--98448999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780662|r 165 KKQLIFI 171 (1576)
Q Consensus 165 ~~~L~~V 171 (1576)
.++|.+.
T Consensus 66 ~kQL~KL 72 (96)
T PRK08178 66 ISQIDKL 72 (96)
T ss_pred HHHHHHC
T ss_conf 9998615
No 213
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=22.39 E-value=29 Score=10.69 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 379899999999998
Q gi|254780662|r 464 HPSQESLEEGVRSIV 478 (1576)
Q Consensus 464 ~vD~~~LE~~i~~~~ 478 (1576)
.+....||++|+.+-
T Consensus 39 nPT~~~le~~la~LE 53 (369)
T cd00614 39 NPTVDALEKKLAALE 53 (369)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 867999999999982
No 214
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=22.31 E-value=29 Score=10.68 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=27.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57999947877438999999999779912799
Q gi|254780662|r 87 ISIITVIVDNIPFLYQSIIGEIVARCRNLTMA 118 (1576)
Q Consensus 87 ~tvi~iv~dD~PfLvDSv~~~l~~~~~~i~~~ 118 (1576)
|-||.++.+|.|=+|..+.-.+...|-+|.-.
T Consensus 1 hLvit~iG~DrpGiv~~vs~~v~~~gcNi~dS 32 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDS 32 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCEEHH
T ss_conf 98999962898659999999999869987243
No 215
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=22.19 E-value=29 Score=10.66 Aligned_cols=52 Identities=15% Similarity=-0.061 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 059998999999977899982899999999999999998457999847899998
Q gi|254780662|r 1226 EHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFFSIL 1279 (1576)
Q Consensus 1226 E~LP~~~~l~~r~~~g~gltrpelavLlay~K~~l~~~l~~s~l~dd~~~~~~l 1279 (1576)
..+|.+.+..+..-+..++.--.-..-+.++.--|.+.+.. -||.+|....+
T Consensus 323 ~~lP~~~~aL~~~~~A~~~l~~~d~~~l~~~idLl~~~~~~--ePdn~Yv~Ae~ 374 (512)
T PRK10153 323 QGLPHQGAALMLFYQAHHYLNSGDAKSLNKGSDLLEEILKS--EPDFTYALAEK 374 (512)
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_conf 74899889999999851566303478899999999999972--99838999999
No 216
>TIGR00496 frr ribosome recycling factor; InterPro: IPR002661 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth . Thus ribosomes are 'recycled' and ready for another round of protein synthesis.; GO: 0006412 translation.
Probab=22.15 E-value=29 Score=10.66 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=32.6
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 69999957999899999999999999999----99997799999999
Q gi|254780662|r 147 SLIQIHCLKITPEEAIEIKKQLIFIIEQL----KLVSQDSREMLASL 189 (1576)
Q Consensus 147 S~I~Ieidr~~~e~~~~L~~~L~~VL~dV----r~aV~Dw~aM~~rl 189 (1576)
+.|.|.++++|.|.+.++.+....+.++. |-+-+|.-.|..++
T Consensus 88 ~~IR~~~PplT~ErRke~~K~aKk~~E~~kvavRNvRrDand~vKkl 134 (177)
T TIGR00496 88 EVIRINFPPLTEERRKELVKVAKKIAEQAKVAVRNVRRDANDKVKKL 134 (177)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHH
T ss_conf 62102588987466787788876432101335520026478899985
No 217
>pfam06187 DUF993 Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=22.14 E-value=29 Score=10.65 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8756435699996399899999999999999881888
Q gi|254780662|r 621 RVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVT 657 (1576)
Q Consensus 621 ~~e~D~~n~Lv~~~~l~~r~v~~lra~~~yl~Q~~~~ 657 (1576)
.++|++- ..+.++|.... ||.+||-..|+.
T Consensus 44 ~ad~~P~----~~~aiDWdaTl---afR~~Lws~GLG 73 (382)
T pfam06187 44 LADNDPW----GPPAIDWDATL---AFRHHLWSLGLG 73 (382)
T ss_pred CCCCCCC----CCCCCCHHHHH---HHHHHHHHCCCC
T ss_conf 5557999----86556859899---999999971432
No 218
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=22.10 E-value=16 Score=12.90 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCEEEECCCCCCCCCHHHHHHHH-HCCCCCCCCCCHHHCCCCCEEEEEC
Q ss_conf 662089997394368677788137989999999-6689870038978717897089821
Q gi|254780662|r 973 RKIQLVAAFDHSDIFIDPDPNSETTFDERKRLF-DSPSSSWQDFDRKVLSKGGMIISRK 1030 (1576)
Q Consensus 973 ~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf-~lprssw~dyd~~liS~gGgv~~r~ 1030 (1576)
++|+|+- ++|.--|. +|.-.+.+. +..+-++++-.+--|.+|-+.+.-.
T Consensus 122 ~~I~l~I-----GlfC~~nf----~~~~~~~~l~e~~gv~~~~V~k~~i~kGkf~v~~~ 171 (275)
T TIGR03289 122 DKIALSI-----GIYCMENF----PYESLKTFINDKCGVTMEQVTKMDIGKGKFWVYTT 171 (275)
T ss_pred CCEEEEE-----CCEECCCC----CHHHHHHHHHHHCCCCHHHEEEEEEECCEEEEEEC
T ss_conf 1436897-----44105887----97899999998629998994368614887999983
No 219
>pfam03699 UPF0182 Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins.
Probab=22.06 E-value=29 Score=10.64 Aligned_cols=68 Identities=28% Similarity=0.393 Sum_probs=44.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 53898679981778883268999999988089985011056999988431011467899999999998089965486459
Q gi|254780662|r 875 LDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTV 954 (1576)
Q Consensus 875 ~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~~fTv 954 (1576)
..+.|||+|| .| .+=+|.=||+.+..+.=|--..-.
T Consensus 550 ~~D~dpY~vv-~d---------------grl~WiiDaYTts~~yPYS~~~~~---------------------------- 585 (771)
T pfam03699 550 TYDSDPYLVV-VD---------------GRLYWIIDAYTTSNRYPYSEPTSL---------------------------- 585 (771)
T ss_pred EECCCCEEEE-EC---------------CEEEEEEEEEECCCCCCCCCCCCC----------------------------
T ss_conf 3579840899-88---------------989999950074788878787677----------------------------
Q ss_pred EEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCC-CCC
Q ss_conf 96058863324431112766208999739436867778-813
Q gi|254780662|r 955 AGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDP-NSE 995 (1576)
Q Consensus 955 vgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~P-D~~ 995 (1576)
+++ =|=|.=|-+ -.|-|+|+.=-|+==|| ||-
T Consensus 586 ------~~~--~NYiRNSVK-v~VDAY~G~v~~Y~~D~~DPi 618 (771)
T pfam03699 586 ------RRG--INYIRNSVK-AVVDAYDGTVDFYVVDPEDPI 618 (771)
T ss_pred ------CCC--CCEEECCEE-EEEECCCCEEEEEECCCCCHH
T ss_conf ------788--542633568-999877880799972898869
No 220
>pfam08955 DUF1901 Domain of unkown function (DUF1901). The C-terminal domain of the bacterial protein 'bypass of forespore C' contains a three-stranded beta-sheet and three alpha-helices. Its exact function is, as yet, unknown.
Probab=22.06 E-value=25 Score=11.24 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=26.9
Q ss_pred CCCCCEEECCCCCCCCC-CEEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 89973742367788766-3369999957999899999999999
Q gi|254780662|r 128 NCDWQLYSPESCGIAQK-QISLIQIHCLKITPEEAIEIKKQLI 169 (1576)
Q Consensus 128 D~~G~L~~v~~~~~~~~-~ES~I~Ieidr~~~e~~~~L~~~L~ 169 (1576)
+++|.|.-.++.+..+. --||.+|.+.++.....++|+++|.
T Consensus 44 ~~dG~lsiF~G~P~~~~iIqsFFQID~~kLeS~~~~~L~~GIr 86 (103)
T pfam08955 44 SEDGVLSIFHGRPEQSEIIQSFFQIDIKKLESHLQAQLEQGIR 86 (103)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHEECHHHHHHHHHHHHHCCCC
T ss_conf 5798489860798844454643201099887767999976972
No 221
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=21.68 E-value=30 Score=10.58 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=7.7
Q ss_pred ECCCCCCCCCCHHHC
Q ss_conf 058863324431112
Q gi|254780662|r 957 VGDMSGDVFGNGMLL 971 (1576)
Q Consensus 957 iGdmsGDVfGNgmLl 971 (1576)
|.-..|-+.|-|+-+
T Consensus 107 Iaai~G~a~GgG~~l 121 (266)
T PRK05981 107 VTAVNGPAAGVGMSF 121 (266)
T ss_pred EEEEECEEECCCHHH
T ss_conf 999807663263677
No 222
>pfam07766 LETM1 LETM1-like protein. Members of this family are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans.
Probab=21.60 E-value=30 Score=10.57 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=40.4
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999977899982899999999999999998--457999847899998883998999888999
Q gi|254780662|r 1233 SFEERIREEVSLSRPEIAILLAYAKLKLSEQL--LDSTLIDDPFFFSILLSYFPRQLSELYSED 1294 (1576)
Q Consensus 1233 ~l~~r~~~g~gltrpelavLlay~K~~l~~~l--~~s~l~dd~~~~~~l~~yfP~~l~~~f~~~ 1294 (1576)
.+..+...|..|||-|.-.|.-..+-.++-.- +-.-+|=-.|+-..+..+||..|...|-..
T Consensus 31 ~l~~k~~~G~~LtRrE~~~l~rt~~Dl~RlvPf~~fiivPF~e~llPv~lklFP~lLPstF~~~ 94 (268)
T pfam07766 31 KLLWKVLNGYELTRREREQLYRTTRDLFRLVPFSVFIIVPFAELLLPIALKLFPNMLPSTFWTA 94 (268)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCH
T ss_conf 9999996589889999999998399999751299999988888899999998513280651796
No 223
>TIGR00448 rpoE DNA-directed RNA polymerase; InterPro: IPR004519 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to Escherichia coli RpoE.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription, 0005634 nucleus.
Probab=21.55 E-value=30 Score=10.56 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=26.3
Q ss_pred EEEEECHHCCHHHHHHHHHHHHHHHCCEEE
Q ss_conf 998211028999999999999997298478
Q gi|254780662|r 409 LIYIPREYFDSFVREKIGNYLSEVCEGHVA 438 (1576)
Q Consensus 409 LVyvPRDRYsT~vR~rIq~~L~~al~g~v~ 438 (1576)
+|=+|=|+|.-.+...|..+|.+.|.|+++
T Consensus 10 ~VriPPd~f~~D~~~~i~~~L~e~f~grld 39 (184)
T TIGR00448 10 TVRIPPDKFGEDLEEVITKLLNEKFEGRLD 39 (184)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 666583201666899999986542046413
No 224
>pfam06708 DUF1195 Protein of unknown function (DUF1195). This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.50 E-value=30 Score=10.55 Aligned_cols=102 Identities=10% Similarity=-0.017 Sum_probs=55.2
Q ss_pred EEECHHCCHHHHHHHHHHHHHHHC----CEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHH
Q ss_conf 821102899999999999999729----8478764322776389999997179877737989999999999854327799
Q gi|254780662|r 411 YIPREYFDSFVREKIGNYLSEVCE----GHVAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFY 486 (1576)
Q Consensus 411 yvPRDRYsT~vR~rIq~~L~~al~----g~v~f~t~~sEs~LARvHfiir~~~~~~~~vD~~~LE~~i~~~~rsW~D~L~ 486 (1576)
+.-+-||--=. ...+|.=+|- |++ +-..|-+.|.+..=-+. .....+.|+-++|.+=.-.-+-|+=--+
T Consensus 29 l~gkgrYKfWa---laAIlLLAfWSMftgsv--tLrwSag~l~~~~~dl~--~~~~dDlDvLEmEeREKvVr~MWDvYt~ 101 (155)
T pfam06708 29 LFGKGRYKFWA---LAAILLLAFWSMFTGSV--TLRWSAGNLNAASDDLD--FPLHDDLDVLEMEEREKLVRHMWDVYTR 101 (155)
T ss_pred EECCCHHHHHH---HHHHHHHHHHHHHHCEE--EEEECCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 01276158999---99999999999753106--88842565133665447--7543322157788999999998888516
Q ss_pred H--HHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9--97501110048978865279889999999997
Q gi|254780662|r 487 K--SAGDGVPRFIFSQTFRDVFSPEKAVEDLPYII 519 (1576)
Q Consensus 487 ~--al~~~~~~~aFp~~Yre~f~p~~Av~Di~~le 519 (1576)
. .-....|..||-++|.|..+-..+|+|-+.-|
T Consensus 102 s~~~rLprFWqEAFeAAYeeL~sD~~~vrdaAisE 136 (155)
T pfam06708 102 SGRVRLPRFWQEAFEAAYEELASDVPGVREAAISE 136 (155)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 88867737899999999999854562106889999
No 225
>KOG3974 consensus
Probab=21.40 E-value=30 Score=10.54 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=46.2
Q ss_pred HHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99977899-982899999999999999998457999847899-9988839989998889997708317999999999998
Q gi|254780662|r 1236 ERIREEVS-LSRPEIAILLAYAKLKLSEQLLDSTLIDDPFFF-SILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEI 1313 (1576)
Q Consensus 1236 ~r~~~g~g-ltrpelavLlay~K~~l~~~l~~s~l~dd~~~~-~~l~~yfP~~l~~~f~~~i~~H~LrREIIaT~laN~i 1313 (1576)
-|+.-|+| ++.--|+++++++| +.+.-++++.|. .+...++-...... ....|- | ..++.+|
T Consensus 222 ~kRcGGQGDiLaGsla~fl~w~k-------~~~~e~~~~~~~a~~a~s~~vr~a~rl---afk~~g--R----~ll~~d~ 285 (306)
T KOG3974 222 LKRCGGQGDILAGSLATFLSWAK-------LLSGEQDSAAFLAAVAGSIMVRRAGRL---AFKRHG--R----SLLTSDI 285 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH-------HCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHCC--C----CCCCCHH
T ss_conf 65647775312518999999987-------413775310466665568999888776---665408--6----3002125
Q ss_pred HHCCCHHHHHHHHHHHC
Q ss_conf 86735238999888709
Q gi|254780662|r 1314 INKGGSCFVVSLAKETG 1330 (1576)
Q Consensus 1314 VNr~G~tF~~rl~e~tG 1330 (1576)
+++.|..|-.++.+...
T Consensus 286 ~~~v~~i~~~~~~~~~~ 302 (306)
T KOG3974 286 PEEVGTIFKSEMEDTVH 302 (306)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 78876654677653046
No 226
>KOG2811 consensus
Probab=21.36 E-value=30 Score=10.53 Aligned_cols=249 Identities=20% Similarity=0.126 Sum_probs=119.8
Q ss_pred CCEEECCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHH
Q ss_conf 98683533134437-324404767999865887707989889988999878999999--98-500789999999975006
Q gi|254780662|r 1127 GGRINSDAIDNSGG-VNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVEL--VL-RNNYLQSLAISLESRKGM 1202 (1576)
Q Consensus 1127 Gg~intDaidNsaG-V~~Sd~EVniKIll~~~~~~g~lt~~~Rn~lL~~mtdeV~~l--VL-~~n~~Q~~~ls~~~~~~~ 1202 (1576)
+|.--||-++++.- ++-|.-|-|+-|-+-.-+..|.-+.++++....+|-+.-.+. +. +.++.
T Consensus 99 ~Gt~~~~~~~~~~~~~~ls~E~l~~wi~k~~~v~d~~s~~q~~~l~h~~~~~~L~~~~~t~kKhl~Q------------- 165 (420)
T KOG2811 99 GGTDETDKIDSSIEISDLSPEELNIWICKEIDVSDGLSTQQKHVLQHESLLANLEEIGNTKKKHLIQ------------- 165 (420)
T ss_pred CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH-------------
T ss_conf 6755555521235242268999999999998753366635788876488898772354057899999-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHH----HCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCCCCCH
Q ss_conf 5179999999999984898824----305999899999997789998289999999999999999845-----7999847
Q gi|254780662|r 1203 AMMWNFAQLMKFLGKEGALDRE----LEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLD-----STLIDDP 1273 (1576)
Q Consensus 1203 ~~~~~~~rli~~Le~~g~Ldr~----~E~LP~~~~l~~r~~~g~gltrpelavLlay~K~~l~~~l~~-----s~l~dd~ 1273 (1576)
+.-++..||+.|.|.+- +|| |--|-|||--+|.. +.++..- .....--
T Consensus 166 -----qsSllg~lE~~~~l~~~~~~~vEF---------------GAGrg~Ls~~vs~~---l~~~~~~l~vlvdR~s~R~ 222 (420)
T KOG2811 166 -----QSSLLGHLEELGLLTAPSSCFVEF---------------GAGRGELSRWVSDC---LQIQNVYLFVLVDRKSSRL 222 (420)
T ss_pred -----HHHHHHHHHHCCCCCCCCCEEEEE---------------CCCCHHHHHHHHHH---HCCCCEEEEEEECCCCHHH
T ss_conf -----988876787535667876258996---------------68702899999998---5346579998520120244
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCC------HHH-H-----------HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH
Q ss_conf 899998883998999888999770831------799-9-----------9999999988673523899988870999999
Q gi|254780662|r 1274 FFFSILLSYFPRQLSELYSEDIMNHQL------RRA-I-----------VATVLANEIINKGGSCFVVSLAKETGSSTED 1335 (1576)
Q Consensus 1274 ~~~~~l~~yfP~~l~~~f~~~i~~H~L------rRE-I-----------IaT~laN~iVNr~G~tF~~rl~e~tGa~~~~ 1335 (1576)
-+.+-+.+-+|..+ +|+.-.|..--| |.+ + .||-++=+-+ -++|....-
T Consensus 223 K~D~k~~~~~~~vi-~R~riDI~dLkL~~i~el~~~~~p~vaisKHLCG~ATDLtLRCl------------~~s~~~~~p 289 (420)
T KOG2811 223 KFDRKLRNKNSLVI-KRIRIDIEDLKLNAIPELKNSGKPYVAISKHLCGAATDLTLRCL------------LSSGDASSP 289 (420)
T ss_pred HHHHHHHCCCCCHH-HEEEEEHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH------------CCCCCCCCC
T ss_conf 31055522686124-03572087638553200045698379984223462123678886------------068543353
Q ss_pred HHHHHHHHHHHCCCHHHH------HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999981937899------99986078589899999999999999999999985188778989999999999999
Q gi|254780662|r 1336 VIRSAVIAYAGYELESLW------QEVDKLDNQISGELQNKIYEEIRLIFINLTRLLIKNGKFIGDIGNAVKRLVTAFHK 1409 (1576)
Q Consensus 1336 i~rAy~~a~~if~l~~l~------~~I~aLd~~v~a~~q~~l~~~~~~ll~r~trW~lr~~~~~~~i~~~i~~~~~~v~~ 1409 (1576)
++++-++|--.-..-.+. +.+..+. ++... -=..++..|.|-+.- .+-......-......
T Consensus 290 ~l~~i~IAlCCHH~c~wr~Y~vg~eyl~~~g--i~~~~-------eF~ilt~m~SWAvcg----~~~~~~~~a~~~~d~~ 356 (420)
T KOG2811 290 VLAGILIALCCHHRCRWRSYGVGKEYLLHWG--ISDED-------EFHILTKMTSWAVCG----VDSRTLRDANEGADES 356 (420)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCCHH-------HHHHHHHHHHHHHCC----CCHHHHHHHHCCCCCC
T ss_conf 0345788774301033444314799999727--89637-------899999864233058----8526666530364210
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9987257359899999999999999769
Q gi|254780662|r 1410 LNSLLQEKIPVEWLERFNNWVTNLTNKG 1437 (1576)
Q Consensus 1410 l~~~l~~~l~~~~~~~~~~~~~~l~~~G 1437 (1576)
+...=+-.++.++++.+..+....++.|
T Consensus 357 ~~~~~~~~it~eEr~~IG~~cK~iId~G 384 (420)
T KOG2811 357 IEGRDAYRITVEEREKIGLKCKRIIDYG 384 (420)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0577764021777999879999999889
No 227
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=21.29 E-value=30 Score=10.52 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.3
Q ss_pred HHHHHHCCCEEEEECCEEEEEC
Q ss_conf 8889856957972154466765
Q gi|254780662|r 557 VPLLENLGFTVISEDTFEIKML 578 (1576)
Q Consensus 557 ~p~l~~~G~~v~~e~~y~i~~~ 578 (1576)
-.+|+.-|++|-..+|++|+..
T Consensus 21 ~~ll~~a~i~~~g~~p~di~Vh 42 (383)
T PRK11705 21 NELLSRAGITINGSRPWDIRVH 42 (383)
T ss_pred HHHHHHCCCCCCCCCCEEEEEC
T ss_conf 9999977961499998348984
No 228
>PRK05355 phosphoserine aminotransferase; Provisional
Probab=21.28 E-value=30 Score=10.52 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999989887762
Q gi|254780662|r 834 GRRDEIIKIGREAYKTYVRALLSITD 859 (1576)
Q Consensus 834 ~~r~~~~~e~~~~y~~fi~~lLditD 859 (1576)
+.|.....+..+.-+.-++.||+|-|
T Consensus 40 SHRs~~f~~i~~~a~~~lr~Ll~iPd 65 (360)
T PRK05355 40 SHRSKEFIAVAEEAEADLRELLNIPD 65 (360)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 55888899999999999999848999
No 229
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4; InterPro: IPR005273 This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The function of these proteins is unknown. .
Probab=21.26 E-value=29 Score=10.70 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=42.7
Q ss_pred CCCEEEEEECCCCCCCCCCH-HHCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 48645996058863324431-112766208999739436867778813798999999966898700389
Q gi|254780662|r 949 STPFTVAGVGDMSGDVFGNG-MLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFD 1016 (1576)
Q Consensus 949 ~~~fTvvgiGdmsGDVfGNg-mLls~~i~lvaafdh~hif~DP~PD~~~s~~Er~RLf~lprssw~dyd 1016 (1576)
+..|.+-+|+---|-||--- -.++..|++++.|-=--+..+|. +.+.+|.||.
T Consensus 120 ~~gl~~~~I~k~rG~vf~~~~k~~~~~i~~~~~YHPA~~Lr~P~---------------l~~~~~~Df~ 173 (185)
T TIGR00758 120 KAGLEFEGITKVRGRVFEYRNKILGTKIKVLATYHPAALLRNPQ---------------LRRELEEDFK 173 (185)
T ss_pred HCCCCCCCCCEEEEEEEEECCEECCCCEEEEEEECCHHHHCCCC---------------CCHHHHHHHH
T ss_conf 52876267301211577314804276047998643436416962---------------3205889899
No 230
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=21.26 E-value=30 Score=10.52 Aligned_cols=125 Identities=17% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHC-CCCCCCCCHHHHHHH-HCC-CCCEEECC
Q ss_conf 137989999999668987003897871789708982144421798999870-988554288899986-303-65304433
Q gi|254780662|r 994 SETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVI-GISKQIATPSEIISA-ILM-ASVDLLWF 1070 (1576)
Q Consensus 994 ~~~s~~Er~RLf~lprssw~dyd~~liS~gGgv~~r~~k~i~ls~~~~~~l-~~~~~~~~p~eli~~-iL~-a~vDLlw~ 1070 (1576)
.+..|.+|.....-.....+.+-.++|.+|--||-=+.... -++.+.| +.+-.++|.+=.+-. +.. ..++++.-
T Consensus 65 ~~~~~~~r~~~~~~~K~~IA~~Aa~lI~~gd~I~lD~GTT~---~~la~~L~~~~ltVvTNsl~ia~~L~~~~~~~vil~ 141 (240)
T PRK10411 65 SGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDASSTC---WYLARQLPDIPIQVFTNSHPICQELGKRERIQLISS 141 (240)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHH---HHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEE
T ss_conf 56546888775799999999999975899999999581999---999998368981999898999999972899789998
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHH-HH
Q ss_conf 87421112689862001521000000258830468998555103076789999973986835331344373244047-67
Q gi|254780662|r 1071 GGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLE-VN 1149 (1576)
Q Consensus 1071 gGiGTYvka~~e~~~~vgd~and~~rv~g~~lr~kvi~EG~NLg~Tq~~Rie~a~~Gg~intDaidNsaGV~~Sd~E-Vn 1149 (1576)
||. |- .++.+-+|.-+.+.++-=--+ -.-+-.++++..+|+.+++.| +.
T Consensus 142 GG~--~~---~~~~s~~G~~a~~~l~~~~~d-------------------------~afig~~gi~~~~g~~~~~~~ea~ 191 (240)
T PRK10411 142 GGT--LE---RKYGCYVNPSLISQLKSLEID-------------------------LFIFSCEGIDSSGALWDSNAINAD 191 (240)
T ss_pred CCE--EE---CCCCEEECHHHHHHHHCCCCC-------------------------EEEECCCEECCCCCCCCCCHHHHH
T ss_conf 999--97---888827899999998653899-------------------------999867043799987669999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780662|r 1150 IK 1151 (1576)
Q Consensus 1150 iK 1151 (1576)
+|
T Consensus 192 ~k 193 (240)
T PRK10411 192 FK 193 (240)
T ss_pred HH
T ss_conf 99
No 231
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.22 E-value=30 Score=10.51 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=23.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999478774389999999997799127998
Q gi|254780662|r 89 IITVIVDNIPFLYQSIIGEIVARCRNLTMAV 119 (1576)
Q Consensus 89 vi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~ 119 (1576)
-|+|..+|+|=....|...+.++|++|+.++
T Consensus 3 rIev~V~Dr~G~La~va~i~~~~~iNI~Sv~ 33 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVL 33 (72)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 5999957986729999999997597589999
No 232
>pfam03181 BURP BURP domain. The BURP domain is found at the C-terminus of several different plant proteins. It was named after the proteins in which it was first identified: the BNM2 clone-derived protein from Brassica napus; USPs and USP-like proteins; RD22 from Arabidopsis thaliana; and PG1beta from Lycopersicon esculentum. This domain is around 230 amino acid residues long. It possesses the following conserved features: two phenylalanine residues at its N-terminus; two cysteine residues; and four repeated cysteine-histidine motifs, arranged as: CH-X(10)-CH-X(25-27)-CH-X(25-26)-CH, where X can be any amino acid. The function of this domain is unknown.
Probab=21.18 E-value=30 Score=10.50 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=37.5
Q ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCH-----HHH-HCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 554620899999999974889888787999998722894-----886-05898999999999973105785179997
Q gi|254780662|r 328 ASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPR-----DEL-FQIDSTLLASFCEQIIDIMDRPRVRVLPR 398 (1576)
Q Consensus 328 v~~IPiLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPR-----DEL-FQ~s~eeL~~~a~gIL~L~eR~rvRLFlR 398 (1576)
+..||+=..|+..||+..++.++|--++.+.+.|+.-=+ ++= =-+|-|.+.+.+...|. ++.++++..
T Consensus 36 AdsIPFSs~kl~~iL~~Fsi~~~S~~a~~m~~Tl~~CE~~~~~GE~k~CaTSlEsmidf~~s~LG---~~~v~a~st 109 (217)
T pfam03181 36 ADSIPFSSEKLPEILAMFSVPPGSVEAKIMKSTLRECEAPAIKGEEKRCATSLESMVDFATSKLG---TRDVRAVST 109 (217)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEC
T ss_conf 50078688899999997189999879999999999975779998754465689999999998607---674499864
No 233
>pfam07171 MlrC_C MlrC C-terminus. This family represents the C-terminus (approximately 200 residues) of the product of a bacterial gene cluster that is involved in the degradation of the cyanobacterial toxin microcystin LR. Many members of this family are hypothetical proteins.
Probab=21.13 E-value=30 Score=10.50 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCEE
Q ss_conf 8889998998453287428887532787168998899899999999999999989887762568----884028831030
Q gi|254780662|r 799 RTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRALLSITDNFE----GQEIIHPDNTVC 874 (1576)
Q Consensus 799 rtEvlgL~kaQ~vKN~vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~lLditDN~~----~g~vv~p~~vv~ 874 (1576)
-|++|.-+-.|.+|++.+. .| -|+++.. .|.+.=+.+-++++-.-. .|+.+.-+..|.
T Consensus 17 ~t~~L~~ll~~~~~~~~~~------~i--------~DP~av~----~a~~aGvG~~v~~~lGgk~d~~~g~Pl~~~~~V~ 78 (177)
T pfam07171 17 GTGLLRALLERGLRDAAIG------TI--------WDPEAVR----AAHAAGEGATISLRLGGKSGPRSGEPIDVRVKVE 78 (177)
T ss_pred HHHHHHHHHHCCCCCEEEE------EE--------CCHHHHH----HHHHCCCCCEEEEEECCEECCCCCCCEEEEEEEE
T ss_conf 9999999986899886999------97--------2999999----9997699987999989850788898688999999
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 53898679981778883268999999988089985011056999988--4310114678999999999980899654864
Q gi|254780662|r 875 LDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYD--HKKMGITARGAWETVKRHFREMDIDIQSTPF 952 (1576)
Q Consensus 875 ~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~Gyd--HK~mGITarGaw~~v~rhfrelg~D~q~~~f 952 (1576)
+..|-.|-. + +-|--+--|.++=.+ --..=||++-.-..=..+|+.+|||++.-++
T Consensus 79 ~l~dG~~~~------~----------------~~g~~~~~G~tavl~~~gv~Vvvts~r~~~~d~~~f~~~Gidp~~~~i 136 (177)
T pfam07171 79 KLSDGRFQR------P----------------FGGSRVPLGRTAVVRIGGIDVILSSNRTQTYDPDDFRALGIDPGTKRI 136 (177)
T ss_pred EEECCCEEE------E----------------ECCEECCCCCEEEEEECCEEEEEECCCCCCCCHHHHHHCCCCHHHCCE
T ss_conf 985584887------7----------------266771778889999799799997686575588899876999768979
Q ss_pred EEEEEC
Q ss_conf 599605
Q gi|254780662|r 953 TVAGVG 958 (1576)
Q Consensus 953 TvvgiG 958 (1576)
.|+=.+
T Consensus 137 ivvKs~ 142 (177)
T pfam07171 137 LVVKSG 142 (177)
T ss_pred EEECCC
T ss_conf 999533
No 234
>pfam12213 Dpoe2NT DNA polymerases epsilon N terminal. This domain is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam04042. There is a single completely conserved residue F that may be functionally important. This domain is the N terminal domain of DNA polymerase epsilon subunit B. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. This domain has close structural relation to AAA+ protein C terminal domains.
Probab=21.12 E-value=30 Score=10.50 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 089999999997488988878799999872289488
Q gi|254780662|r 333 LLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDE 368 (1576)
Q Consensus 333 iLRrKV~~VL~~sGf~p~SHsgK~L~~ILEtyPRDE 368 (1576)
-||+++...++..||.-.|-.-+-|.++|+..+..|
T Consensus 4 ~lr~~i~~~Fkl~G~~Lr~eA~~yl~~~l~~~~~~e 39 (72)
T pfam12213 4 ALRRRVVSAFKLHGFSLRSEASKYLAEVLLSLGEPE 39 (72)
T ss_pred HHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCHHH
T ss_conf 899999988724103043889999999846799899
No 235
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=21.04 E-value=29 Score=10.69 Aligned_cols=29 Identities=21% Similarity=0.018 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCCCEEEEECCHHHHHHHH
Q ss_conf 57998405423304042008857888889
Q gi|254780662|r 774 VEGVHLRCGKIARGGLRWSDRAADYRTEV 802 (1576)
Q Consensus 774 ~eGvHlR~g~vARGGlRwSdR~edfrtEv 802 (1576)
.+-+-+|+.-+.++|.|.|-|.|+++=-+
T Consensus 10 ~~~~~~~~rS~~i~G~~TS~rLE~~FW~~ 38 (102)
T COG4321 10 PELYESRKRSLRIRGHRTSVRLENPFWDI 38 (102)
T ss_pred HHHHHHEEEEEEECCEEEEEEEHHHHHHH
T ss_conf 37754311357861426667631279999
No 236
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=20.98 E-value=31 Score=10.47 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=4.9
Q ss_pred HHHHHHHHCCCHH
Q ss_conf 9998887099999
Q gi|254780662|r 1322 VVSLAKETGSSTE 1334 (1576)
Q Consensus 1322 ~~rl~e~tGa~~~ 1334 (1576)
.+++.+-+|.+++
T Consensus 10 a~~~A~~~g~p~~ 22 (141)
T COG5478 10 ANRVADFLGRPPA 22 (141)
T ss_pred HHHHHHHHCCCHH
T ss_conf 9999999569759
No 237
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=20.96 E-value=31 Score=10.47 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=3.4
Q ss_pred CCCHHHHHHH
Q ss_conf 1146789999
Q gi|254780662|r 926 GITARGAWET 935 (1576)
Q Consensus 926 GITarGaw~~ 935 (1576)
|||--..|-+
T Consensus 264 GItNGA~WY~ 273 (402)
T cd03865 264 GTTNGGAWYS 273 (402)
T ss_pred CEECCEEEEE
T ss_conf 3363405640
No 238
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=20.94 E-value=31 Score=10.47 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=6.2
Q ss_pred CEEEEEEEEEEE
Q ss_conf 918810479984
Q gi|254780662|r 220 NFQFMGMRYHPL 231 (1576)
Q Consensus 220 hFtFLGyReY~l 231 (1576)
|=++||-..|-+
T Consensus 165 N~iyfG~~ayGV 176 (850)
T PRK11636 165 NKIYLGYRAYGV 176 (850)
T ss_pred HHCCCCCCCHHH
T ss_conf 453678962889
No 239
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=20.92 E-value=31 Score=10.46 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=9.2
Q ss_pred HHHHHCCCEEEEECCEEEE
Q ss_conf 8898569579721544667
Q gi|254780662|r 558 PLLENLGFTVISEDTFEIK 576 (1576)
Q Consensus 558 p~l~~~G~~v~~e~~y~i~ 576 (1576)
...|-=|+.|-.-||-.++
T Consensus 165 n~iE~AGlh~DGtRpL~~r 183 (283)
T TIGR00292 165 NAIELAGLHVDGTRPLTLR 183 (283)
T ss_pred CHHEECCCCCCCCCCCEEE
T ss_conf 3310015434788571000
No 240
>pfam06798 PrkA PrkA serine protein kinase C-terminal domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This family corresponds to the C-terminal domain.
Probab=20.88 E-value=31 Score=10.46 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 9999999999999976-99988999
Q gi|254780662|r 1421 EWLERFNNWVTNLTNK-GFPPDLAD 1444 (1576)
Q Consensus 1421 ~~~~~~~~~~~~l~~~-Gvp~~LA~ 1444 (1576)
+....+...+++|++. |--+.-|+
T Consensus 225 e~qkk~~~~v~rmi~~~GY~e~~a~ 249 (254)
T pfam06798 225 EQQKKIDEVVDRMIKKYGYCEHCAR 249 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999999986499999999
No 241
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=20.77 E-value=31 Score=10.44 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=6.0
Q ss_pred EEECCCCCCCCCCHH
Q ss_conf 960588633244311
Q gi|254780662|r 955 AGVGDMSGDVFGNGM 969 (1576)
Q Consensus 955 vgiGdmsGDVfGNgm 969 (1576)
.-|.-..|-++|-|+
T Consensus 104 PvIAav~G~a~GgG~ 118 (260)
T PRK06143 104 PVIARIPGWCLGGGL 118 (260)
T ss_pred CEEEEECCEEECCCH
T ss_conf 889998796110425
No 242
>pfam00912 Transgly Transglycosylase. The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyses the polymerisation of murein glycan chains.
Probab=20.72 E-value=31 Score=10.43 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8978889999999999976987564356999963998999999999999998-----81888898999999971479999
Q gi|254780662|r 601 FDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLR-----QASVTWSQNFIARVLSKNPTISQ 675 (1576)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~e~D~~n~Lv~~~~l~~r~v~~lra~~~yl~-----Q~~~~~s~~~i~~~l~~~p~~~~ 675 (1576)
++++++-..+..|+.++ |+..|-. ..|++|. .++||....+. |-|.+.||..+
T Consensus 16 v~~~~ip~~l~~A~ia~-----ED~~F~~---H~Gid~~--~i~rA~~~~~~~~~~~~GgSTITqQl~------------ 73 (174)
T pfam00912 16 VPLDEIPPHLINAVVAI-----EDRRFYS---HPGVDPK--GIARAALSNLRSGGIVQGGSTITQQLA------------ 73 (174)
T ss_pred ECHHHCCHHHHHHHHHH-----CCCCCCC---CCCCCHH--HHHHHHHHHHHCCCCCCCCCCHHHHHH------------
T ss_conf 32899699999684221-----4864243---8886878--999999998315898888463999998------------
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999987528887752048899999999999863036832779999999999975
Q gi|254780662|r 676 LLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTVLRSYVNLISGT 731 (1576)
Q Consensus 676 ~l~~~F~~rFdP~~~~~~r~~~~~~~~~~~~~~l~~V~~ld~drilr~~~~~i~at 731 (1576)
+.+ +..+ -.|.-...-+.-.++ ..+..|+||-.|++.+.--
T Consensus 74 ---k~~-----~~rt-~~RK~~E~~~a~~lE------~~~sK~eILe~YLN~v~~G 114 (174)
T pfam00912 74 ---KNL-----TERT-LSRKLREAILALRLE------RRYSKDEILELYLNTVYFG 114 (174)
T ss_pred ---HHC-----CCCC-HHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHCCCC
T ss_conf ---762-----6788-999999999999999------8779899999999764618
No 243
>pfam05540 Serpulina_VSP Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.
Probab=20.64 E-value=31 Score=10.42 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=16.5
Q ss_pred HHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEEECC
Q ss_conf 88985695797215446676588873179999814306
Q gi|254780662|r 558 PLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSP 595 (1576)
Q Consensus 558 p~l~~~G~~v~~e~~y~i~~~~~~~~~~~~i~~f~l~~ 595 (1576)
.+-+.++--+-.|. -|+|.. |. -|-.++.+..
T Consensus 320 k~~hsL~w~aY~EL--YI~Pv~--dL--EWYFEmdVnn 351 (377)
T pfam05540 320 KVQHTLYWGAYAEL--YIRPVQ--DL--EWYFEMDVNN 351 (377)
T ss_pred CCEEEEEEEEEEEE--EEEECC--CC--EEEEEEECCC
T ss_conf 20058876657899--987648--71--6999997367
No 244
>KOG4354 consensus
Probab=20.61 E-value=31 Score=10.41 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHH
Q ss_conf 98887879999987228948860589899999999
Q gi|254780662|r 348 HPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCE 382 (1576)
Q Consensus 348 ~p~SHsgK~L~~ILEtyPRDELFQ~s~eeL~~~a~ 382 (1576)
...+|.||.|..++++.|--|+-..+..+|.-.-+
T Consensus 26 GArGYTGknlv~Lin~HPylevthvssrel~Gqkl 60 (340)
T KOG4354 26 GARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKL 60 (340)
T ss_pred ECCCCCHHHHHHHHCCCCCEEEEEEEHHHHCCCCC
T ss_conf 33665416699886389736888632254347715
No 245
>PRK03846 adenylylsulfate kinase; Provisional
Probab=20.60 E-value=9.3 Score=15.05 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=10.3
Q ss_pred CCCCCEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 25883046899855510307678999997
Q gi|254780662|r 1097 VTADKVRAKVIGEGANLGLTQQARVVYSL 1125 (1576)
Q Consensus 1097 v~g~~lr~kvi~EG~NLg~Tq~~Rie~a~ 1125 (1576)
+||.++|.. =+.+||+|..+|.+-++
T Consensus 58 LDGD~lR~~---l~~dlgfs~~dR~~n~~ 83 (198)
T PRK03846 58 LDGDNVRHG---LCSDLGFSDADRKENIR 83 (198)
T ss_pred ECHHHHHHH---HCCCCCCCHHHHHHHHH
T ss_conf 777999874---36678989999999999
No 246
>KOG0652 consensus
Probab=20.59 E-value=31 Score=10.41 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=9.5
Q ss_pred CCCCEEEEEECCCEEEECC
Q ss_conf 7662089997394368677
Q gi|254780662|r 972 SRKIQLVAAFDHSDIFIDP 990 (1576)
Q Consensus 972 s~~i~lvaafdh~hif~DP 990 (1576)
+..+|.+||.|.-+|. ||
T Consensus 308 ~~~vKviAATNRvDiL-DP 325 (424)
T KOG0652 308 DDRVKVIAATNRVDIL-DP 325 (424)
T ss_pred CCCEEEEEECCCCCCC-CH
T ss_conf 5626788521643434-88
No 247
>pfam09710 Trep_dent_lipo Treponema clustered lipoprotein (Trep_dent_lipo). This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighbouring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown.
Probab=20.59 E-value=5.7 Score=16.93 Aligned_cols=201 Identities=22% Similarity=0.316 Sum_probs=107.7
Q ss_pred HHHCCCCCCCCCCCEE-EEECCCCC-CCCHHHHHHHHHH---HHHHHHHHHHH---H----------HHCCCCCCCCCCC
Q ss_conf 4532874288875327-87168998-8998999999999---99999989887---7----------6256888402883
Q gi|254780662|r 809 QKVKNAVIVPVGAKGG-FYPKRLPS-EGRRDEIIKIGRE---AYKTYVRALLS---I----------TDNFEGQEIIHPD 870 (1576)
Q Consensus 809 Q~vKN~vIvp~GaKGg-fv~k~~~~-~~~r~~~~~e~~~---~y~~fi~~lLd---i----------tDN~~~g~vv~p~ 870 (1576)
-|-||..|+.+-+-|- .+||+..+ +.+.+..-.-.-. -=|.|...--+ = .-|-+.|.|.
T Consensus 104 ~~qkn~e~ikv~~d~e~iyCkqk~~~~nGk~l~Y~v~Y~wy~~~k~f~~t~Yell~E~ni~~i~~~~i~~qvHG~i~--- 180 (394)
T pfam09710 104 AQQKNLEFIKVKKDGEFIYCKQKAPTQNGKDLDYQVTYKWYNIEKMFLPTSYELLSELNIGVINEELIENQVHGSVY--- 180 (394)
T ss_pred HHHCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEECCHHHHCCCCCHHHHCCCCEEEECHHHHHHHHCEEEE---
T ss_conf 65338408998027956998720568998658999999983255532642055640487036503555432032676---
Q ss_pred CCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 10305389867998177888326899999998808998501105699998843101146789999999999808996548
Q gi|254780662|r 871 NTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQST 950 (1576)
Q Consensus 871 ~vv~~d~~d~ylvvaaDkgTa~fsD~An~ia~~~gfwlgdAFaSGgs~GydHK~mGITarGaw~~v~rhfrelg~D~q~~ 950 (1576)
--+.|| --||...-|-|..|.. .--+..+|-|+-|-| .-+||..|---|-|
T Consensus 181 ----e~e~d~----~kd~~IklFE~Y~n~~------------Tk~~~~~~~~y~y~v-----lDYVkGNFTnSGyD---- 231 (394)
T pfam09710 181 ----EMENDP----KKDEMIKLFEDYENTY------------TKVKTNKYKQYDYRV-----LDYVKGNFTNSGYD---- 231 (394)
T ss_pred ----ECCCCC----CHHHHHHHHHHHHHHC------------CCCCCCCCCCCCEEE-----EEEECCCCCCCCCC----
T ss_conf ----513485----7455568899875420------------231005656675587-----67532466678864----
Q ss_pred CEEEEEECCCCCCCCCCHHHCCCCCEEEEEECCCEEEECCCCCCCC------CHHHHHHHHHCCCC-CCCCCCHHHCCCC
Q ss_conf 6459960588633244311127662089997394368677788137------98999999966898-7003897871789
Q gi|254780662|r 951 PFTVAGVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSET------TFDERKRLFDSPSS-SWQDFDRKVLSKG 1023 (1576)
Q Consensus 951 ~fTvvgiGdmsGDVfGNgmLls~~i~lvaafdh~hif~DP~PD~~~------s~~Er~RLf~lprs-sw~dyd~~liS~g 1023 (1576)
+.-|. |.-|+|||++ +|-||.|-|-...+ -..+|. +--.|
T Consensus 232 EYiV~-------------------------------Ft~d~~d~el~D~~~~~~I~~V~CFIve~dkiik~Y~--i~~~~ 278 (394)
T pfam09710 232 EYIVM-------------------------------FTEDDPDPELYDITWKQFIERVRCFIVEEDKIIKDYY--IYFRG 278 (394)
T ss_pred EEEEE-------------------------------EECCCCCCCCCCHHHHHHEEEEEEEEEECCEEEEEEE--ECCCC
T ss_conf 38999-------------------------------9479998410122355423148999985883899999--52556
Q ss_pred CEEEEECCCCCCCCHHHHHHCCCCCCCCCH--HHHHHHHCCCCCEEECCCCCCCEE
Q ss_conf 708982144421798999870988554288--899986303653044338742111
Q gi|254780662|r 1024 GMIISRKEKAVQLTPEAVAVIGISKQIATP--SEIISAILMASVDLLWFGGIGTYI 1077 (1576)
Q Consensus 1024 Ggv~~r~~k~i~ls~~~~~~l~~~~~~~~p--~eli~~iL~a~vDLlw~gGiGTYv 1077 (1576)
|.++|+..+++.|+.-..--.....+|++- ..-|+.|. |..+|-||.+-+.
T Consensus 279 g~f~P~~~~~~~L~~~~~fG~qFsqGWiADfNQNGiNEIy---v~~~~~~g~~~~~ 331 (394)
T pfam09710 279 GIFLPAYEKSSSLYGITNFGFQFSQGWVADFNQNGINEIY---VYFFWKGGVRLFM 331 (394)
T ss_pred CEEECCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCEEEE---EEEEECCCCEEEE
T ss_conf 4670520144640020013411200034342237830489---9975337744899
No 248
>PHA02110 hypothetical protein
Probab=20.48 E-value=27 Score=10.88 Aligned_cols=13 Identities=38% Similarity=1.012 Sum_probs=10.4
Q ss_pred HHHHHCCEEEEEE
Q ss_conf 9997289188104
Q gi|254780662|r 214 NWLNEDNFQFMGM 226 (1576)
Q Consensus 214 ~WL~ddhFtFLGy 226 (1576)
.||-.|.|+|+|-
T Consensus 33 ~w~i~dgfvf~~d 45 (98)
T PHA02110 33 HWMIRDGFVFIGD 45 (98)
T ss_pred EEEEECCEEEECC
T ss_conf 0276257799679
No 249
>TIGR01152 psbD photosystem II D2 protein (photosystem q(a) protein); InterPro: IPR005868 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane , . Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection . This family represents the D2 protein (PsbD), which forms the reaction core of PSII as a heterodimer with the D1 protein. The accumulation of D2 protein appears to be a key step in the assembly of the PSII reaction centre complex . In higher plants, the N-terminal residues of both proteins, which are exposed to the stromal surface, can be reversibly phosphorylated. The D1/D2 core binds to a number of cofactors, including: a 4-atom manganese cluster, which is located on the lumenal surface of the D1 and D2 proteins ; two pheophytin molecules, only one of which is phytochemically active; non-haem iron; and two quinones, Qa (bound to D2) and Qb (bound to D1). Upon light excitation, an electron is transferred from the primary donor (chlorophyll a) via intermediate acceptor pheophytin to the primary quinone Qa, then to the secondary quinone Qb. At the oxidising side of PSII, a redox-active residue in the D1 protein reduces P680, the oxidised tyrosine then withdrawing electrons from a manganese cluster, which in turn withdraw electrons from water, leading to the splitting of water and the formation of molecular oxygen. PSII thus provides a source of electrons that can be used by photosystem I to produce the reducing power (NADPH) required to convert CO2 to glucose.; GO: 0045156 electron transporter transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis light reaction, 0016020 membrane, 0030076 light-harvesting complex.
Probab=20.38 E-value=31 Score=10.38 Aligned_cols=245 Identities=16% Similarity=0.131 Sum_probs=138.5
Q ss_pred HHHHHHHHCCEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHCCCCCEEEEECCCCCCC
Q ss_conf 99999972891881047998413777513632288741100385311254101897888-76126981899844873310
Q gi|254780662|r 211 TFLNWLNEDNFQFMGMRYHPLVAGQKQVKLDHDMPTELGILRDSSIVVLGFDRVTPATR-SFPEGNDFLIITKSNVISVI 289 (1576)
Q Consensus 211 aFL~WL~ddhFtFLGyReY~l~~~~~~~~L~~~~~sgLGILR~~~~~~~~~~~l~~~~r-~~~~~~~~LivtKan~rS~V 289 (1576)
..=+||..|.|+|+|.--. -|-|-.=-.+|-.-. ......+=.+.... ++++.-..|..+-|.-...+
T Consensus 17 ~~ddWl~~drfvf~GWsGl---------ll~P~~y~a~G~W~t--G~~fvtsWythGla~syleG~n~lt~avs~Pa~~~ 85 (352)
T TIGR01152 17 VLDDWLKRDRFVFVGWSGL---------LLFPCAYLALGGWLT--GTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSL 85 (352)
T ss_pred HHHHHHHCCCEEEEEHHHH---------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 6677762185799820368---------887689987402453--12454344454446666532224333122642354
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEEEEEEECHHHHCCCHHHCCHHHHHHH--HHHHHCCCCCCCCCH--HHHHHHHHCCC
Q ss_conf 03677648999878699988778788521004762688554620899999--999974889888787--99999872289
Q gi|254780662|r 290 YRRTYMDHIGIKHFDERGNLIGELHVVGFFTRLVYSQRASKIPLLREKIV--KVQNLLNFHPNSHSS--RMLQNTLEFYP 365 (1576)
Q Consensus 290 HR~aylDyIgVK~fDa~G~viGE~RFlGLFTSsAY~~sv~~IPiLRrKV~--~VL~~sGf~p~SHsg--K~L~~ILEtyP 365 (1576)
- ..- +-+---.++|+.+.=..+=||.+-.|.+..-.-|-+.-|+.+ +.++---+..-.+|+ .-...+.=-||
T Consensus 86 ~-hsl---l~l~G~ea~~~~~rW~q~GGlW~f~alhGa~~liGf~lrqfe~a~~v~~rPynaiafs~Piavfvsvfl~yP 161 (352)
T TIGR01152 86 G-HSL---LLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLIYP 161 (352)
T ss_pred H-HEE---EEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHC
T ss_conf 3-202---023546321002223333205878998756899999998887654403464201222022888777777612
Q ss_pred H--HHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEECHHCCHHHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 4--88605898999999999973105785179997466689899999821102899999999999999729847876432
Q gi|254780662|r 366 R--DELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGHVAFYSSI 443 (1576)
Q Consensus 366 R--DELFQ~s~eeL~~~a~gIL~L~eR~rvRLFlR~D~fgRFvS~LVyvPRDRYsT~vR~rIq~~L~~al~g~v~f~t~~ 443 (1576)
- ..-|.++.=-...+-+=||-+|.-..-.|-. |. --.+---++..|.-+.+|.....+.|
T Consensus 162 lGq~~WffaPsfGvaaifrf~lf~qGfhnWtl~P----fh--------------mmGvaG~lG~allCaihGa~v~ntlf 223 (352)
T TIGR01152 162 LGQSSWFFAPSFGVAAIFRFILFLQGFHNWTLNP----FH--------------MMGVAGVLGAALLCAIHGATVENTLF 223 (352)
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCC----HH--------------HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 5544210020233899999999961110012561----35--------------55566788788988750101311110
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf 27763899999971798777379899999999998543277999975011100
Q gi|254780662|r 444 LEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYKSAGDGVPRF 496 (1576)
Q Consensus 444 sEs~LARvHfiir~~~~~~~~vD~~~LE~~i~~~~rsW~D~L~~al~~~~~~~ 496 (1576)
-++.-+...-- -++..++-.-.+..+-|-|+.-+.-+....+|-+
T Consensus 224 ed~~~~~tf~a--------f~P~q~eetysmvtanrfWsqifG~afsnkrWl~ 268 (352)
T TIGR01152 224 EDGDGANTFRA--------FNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLH 268 (352)
T ss_pred CCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 16776441013--------5765310123445566566665432200115666
No 250
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=20.37 E-value=31 Score=10.37 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHCCEEE
Q ss_conf 8999999997289188
Q gi|254780662|r 208 EALTFLNWLNEDNFQF 223 (1576)
Q Consensus 208 Ea~aFL~WL~ddhFtF 223 (1576)
|++++++|+...+|++
T Consensus 154 Et~Avm~w~~~~pFvL 169 (375)
T cd03863 154 ETLAVMSWLKSYPFVL 169 (375)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 3999999986199479
No 251
>KOG2666 consensus
Probab=20.32 E-value=31 Score=10.37 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=9.5
Q ss_pred HHHHHHHHCCCCHHHHHH
Q ss_conf 356999963998999999
Q gi|254780662|r 626 SFNHLIMLTDLRVYEISV 643 (1576)
Q Consensus 626 ~~n~Lv~~~~l~~r~v~~ 643 (1576)
...+|--.+|-+-.||+-
T Consensus 232 s~SAlCEaTGAdvseVa~ 249 (481)
T KOG2666 232 SMSALCEATGADVSEVAY 249 (481)
T ss_pred HHHHHHHHCCCCHHHHHH
T ss_conf 789998740766999988
No 252
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; InterPro: IPR011863 This protein is has been characterised as both a phosphoserine phosphatase and a phosphoserine:homoserine phosphotransferase . In Pseudomonas aeruginosa, where the characterization was done, a second phosphoserine phosphatase (SerB) and a second homoserine kinase (thrB) are found, but in Fibrobacter succinogenes neither are present. .
Probab=20.30 E-value=31 Score=10.36 Aligned_cols=11 Identities=55% Similarity=1.207 Sum_probs=4.7
Q ss_pred HHHHHCCCEEE
Q ss_conf 88985695797
Q gi|254780662|r 558 PLLENLGFTVI 568 (1576)
Q Consensus 558 p~l~~~G~~v~ 568 (1576)
|++.|+|+..+
T Consensus 99 P~M~~LGFPT~ 109 (203)
T TIGR02137 99 PLMKNLGFPTL 109 (203)
T ss_pred HHHHHCCCCEE
T ss_conf 88874588503
No 253
>pfam02990 EMP70 Endomembrane protein 70.
Probab=20.16 E-value=20 Score=12.18 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=8.8
Q ss_pred HCCCCCCCHHCCCCCCC
Q ss_conf 80899850110569999
Q gi|254780662|r 903 EAKFWLDDAFASGGSMG 919 (1576)
Q Consensus 903 ~~gfwlgdAFaSGgs~G 919 (1576)
|---|+|.+|.+|||.|
T Consensus 481 Edy~WwWrSF~~~gs~~ 497 (518)
T pfam02990 481 EDYRWWWRSFLTSGSTA 497 (518)
T ss_pred CCCCCEEHHHHCCHHHH
T ss_conf 88151106434460999
No 254
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.11 E-value=32 Score=10.33 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=45.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99994787743899999999977991279984648999889973742367788766336999995799989999999999
Q gi|254780662|r 89 IITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQL 168 (1576)
Q Consensus 89 vi~iv~dD~PfLvDSv~~~l~~~~~~i~~~~HPvl~V~RD~~G~L~~v~~~~~~~~~ES~I~Ieidr~~~e~~~~L~~~L 168 (1576)
+|.|..+|+|=++-+++..|.+++.+|--+-..|+ +|.+ ---|.++++.- .....+.++|
T Consensus 1 lItv~G~DrpGi~a~v~~~La~~~~~IlDI~Q~vi------~~~l------------~l~~lv~ip~~--~~~~~l~k~L 60 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI------HGRL------------SLGILVQIPDS--ADSEALLKDL 60 (75)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEEEEHHHC------CCEE------------EEEEEEEECCC--CCHHHHHHHH
T ss_conf 98997799887899999999877990896255506------4757------------79999980785--3468999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780662|r 169 IFIIEQL 175 (1576)
Q Consensus 169 ~~VL~dV 175 (1576)
.....+.
T Consensus 61 ~~~~~~l 67 (75)
T cd04870 61 LFKAHEL 67 (75)
T ss_pred HHHHHHC
T ss_conf 9999985
No 255
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=20.02 E-value=12 Score=14.14 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88999899845328742888753278716899889989999999999999998988776256888402883
Q gi|254780662|r 800 TEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPD 870 (1576)
Q Consensus 800 tEvlgL~kaQ~vKN~vIvp~GaKGgfv~k~~~~~~~r~~~~~e~~~~y~~fi~~lLditDN~~~g~vv~p~ 870 (1576)
+|+.--+-.-+.| .-||||||=--=++|- .-.++. -|++||+-.+.++-+++--.+.+.-+|-.
T Consensus 123 ~ei~e~ae~~gyk-vfIvpGgs~vkkIlKe----~k~e~v--lgVAC~~eL~~~m~~ls~~~ip~qgvpll 186 (209)
T COG1852 123 GEIKEIAEKYGYK-VFIVPGGSFVKKILKE----EKPEAV--LGVACYRELNEGMEALSRKKIPGQGVPLL 186 (209)
T ss_pred HHHHHHHHHHCCE-EEEECCHHHHHHHHHH----CCCCEE--EEEEEHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999899983967-9996581799999861----177627--98745299999999833457875674324
Done!