RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
         (1576 letters)



>gnl|CDD|147324 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase.  This
            family consists of several bacterial proteins which are
            closely related to NAD-glutamate dehydrogenase found in
            Streptomyces clavuligerus. Glutamate dehydrogenases
            (GDHs) are a broadly distributed group of enzymes that
            catalyse the reversible oxidative deamination of
            glutamate to ketoglutarate and ammonia.
          Length = 1526

 Score = 1742 bits (4515), Expect = 0.0
 Identities = 647/1527 (42%), Positives = 900/1527 (58%), Gaps = 55/1527 (3%)

Query: 86   SISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQ-K 144
            + +++ ++ D++PFL  S+  E+      + + +HPV    ++ D +L        +   
Sbjct: 15   THTVVEIVNDDMPFLVDSVTMELNRLGLTIHLLLHPVLRVRRDKDGELTEVLPADDSGGL 74

Query: 145  QISLIQIHCLKITPEEAIE-IKKQLIFIIEQLKLVSQDSREMLASLEKMQKSF--CHLTG 201
            + SLI I   ++T  E +E ++++L  ++  ++   +D   M A L ++           
Sbjct: 75   RESLIHIEIDRLTDAEELEALEEELERVLADVRAAVEDWPAMRARLRELAAELATAPPPV 134

Query: 202  IKEYAVEALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKLDHDMPTELGILRDSSIVVLG- 260
              E   EA  FL WL +D+F F+G R + L A    + L     + LGILRD S++  G 
Sbjct: 135  DAEELEEAAAFLRWLADDHFTFLGYREYDLEADGGGLVLRAVPGSGLGILRDVSVLRRGR 194

Query: 261  -FDRVTP-ATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGIKHFDERGNLIGELHVVGF 318
                + P    +  E  + LI+TK+N  S ++R  Y+D+IG+K FD  G +IGE   +G 
Sbjct: 195  DLAALPPEERAAALESPELLIVTKANSRSRVHRPAYLDYIGVKRFDADGEVIGEHRFLGL 254

Query: 319  FTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLA 378
            FT   Y+Q   +IPLLR K+ +V     F P SHS + L N LE YPRDELFQI    L 
Sbjct: 255  FTSAAYTQSPREIPLLRRKVERVLERSGFDPGSHSGKALLNILETYPRDELFQISEDELL 314

Query: 379  SFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGH-V 437
                 I+ + +RPRVR+  R D F  F S L+Y+PR+ +++ +R +I + L+E   G  V
Sbjct: 315  EIAMGILSLQERPRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRLRIQDILAEALGGTSV 374

Query: 438  AFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYKSAGDGVP--- 494
             F +   E  L R+HF++    G         LE  +      WED+   +  +      
Sbjct: 375  EFTTQFSESPLARVHFIVRVDPGAEPDVDVAELEARLAEAARSWEDRLQDALLEAFGEER 434

Query: 495  ------RFI--FSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCF---ENKEDGKVQIK 543
                  R+   F  ++R+ FSP +AV D+  + + +     L V        E G +++K
Sbjct: 435  GAALARRYADAFPASYREDFSPREAVADIERLEALSAE-GPLAVRLYRPLEAEPGSLRLK 493

Query: 544  IFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDL 603
            ++HA  P  LS  +P+LENLG  VI E  +E+      +   V ++   L        DL
Sbjct: 494  LYHAGEPLPLSDVLPVLENLGLRVIDERPYEV----RPDGRRVWIHDFGLELPGGGPIDL 549

Query: 604  VDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFI 663
             + R+   EAF  +++ R +ND FN L++   L   E++VLR+YARYLRQ    +SQ++I
Sbjct: 550  DEVRERFEEAFAAVWNGRAENDGFNRLVLAAGLSWREVAVLRAYARYLRQTGFPFSQDYI 609

Query: 664  ARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTVLRS 723
               LS++P I++LL +LF  RFDP+  +++R      +   I+ AL  V SLD+D +LR 
Sbjct: 610  EDTLSRHPDIARLLVALFEARFDPA-LEEDREAKAAALRAAIEEALDAVASLDEDRILRR 668

Query: 724  YVNLISGTLRTNYFQKNQDDI---ALVFKFDSRKINSVGTDEL-----HREIFVYGVEVE 775
            Y+NLI  TLRTN++Q++ D      L FK D  KI      +L       EIFVY   VE
Sbjct: 669  YLNLIDATLRTNFYQRDADGQPKPYLSFKLDPAKI-----PDLPLPRPWFEIFVYSPRVE 723

Query: 776  GVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGR 835
            GVHLR GK+ARGGLRWSDR  D+RTEVLGLV+AQ VKNAVIVPVGAKGGF  KRLP  G 
Sbjct: 724  GVHLRGGKVARGGLRWSDRREDFRTEVLGLVKAQMVKNAVIVPVGAKGGFVVKRLPDPGD 783

Query: 836  RDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSD 895
            R+  +  G   YKT++R LL ITDN    E++ P + V  DG+DPY VVAADKGTATFSD
Sbjct: 784  REAWMAEGIACYKTFIRGLLDITDNLVDGEVVPPADVVRHDGDDPYLVVAADKGTATFSD 843

Query: 896  TANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVA 955
             AN +A E  FWL DAFASGGS+GYDHKKMGITARGAWE+VKRHFREM IDIQ+ PFTV 
Sbjct: 844  IANAIAAEYGFWLGDAFASGGSVGYDHKKMGITARGAWESVKRHFREMGIDIQTEPFTVV 903

Query: 956  GVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDF 1015
            G+GDMSGDVFGNGMLLS  I+LVAAFDH  IFIDPDP+   +F ERKRLF+ P SSW D+
Sbjct: 904  GIGDMSGDVFGNGMLLSEHIRLVAAFDHRHIFIDPDPDPAKSFAERKRLFELPRSSWADY 963

Query: 1016 DRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGT 1075
            D+ ++SKGG + SR  K++ L+PE  A +GI K   TP+E+I AIL A VDLLW GGIGT
Sbjct: 964  DKSLISKGGGVFSRSAKSIPLSPEVRAALGIEKDSLTPNELIRAILKAPVDLLWNGGIGT 1023

Query: 1076 YIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAI 1135
            Y++A  E +AD+GD+ N+ LRV   ++RAKV+GEG NLG+TQ  R+ Y+LNGGRIN+DAI
Sbjct: 1024 YVKASTETHADVGDRANDALRVNGRELRAKVVGEGGNLGVTQLGRIEYALNGGRINTDAI 1083

Query: 1136 DNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAIS 1195
            DNS GV+CSD EVNIKI L S +R G LT + RN LL+SMT EV ELVLR+NYLQ+LA+S
Sbjct: 1084 DNSAGVDCSDHEVNIKILLNSLVRAGDLTRKQRNALLASMTDEVAELVLRDNYLQTLALS 1143

Query: 1196 LESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAY 1255
            L   +  A +   A+L+  L KEG LDR LE LPS     ER      L+RPE+A+LLAY
Sbjct: 1144 LAEARAAARLEEHARLIDTLEKEGRLDRALEFLPSDEELAERAAAGQGLTRPELAVLLAY 1203

Query: 1256 AKLKLSEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIIN 1315
            AKL L ++LL S L DDP+   +LL YFP  L E +++ I +H LRR I+ATVLAN+I+N
Sbjct: 1204 AKLVLKDELLASDLPDDPYLARLLLDYFPPPLRERFADAIESHPLRREIIATVLANDIVN 1263

Query: 1316 KGGSCFVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEI 1375
            + G  FV  LA+ETG+S  DV R+ V A   + L +LW E++ LDN++   +Q ++  E+
Sbjct: 1264 RMGITFVFRLAEETGASVADVARAYVAAREIFGLPALWDEIEALDNKVPAAVQLRLLLEL 1323

Query: 1376 RLIFINLTRLLIKNGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTN 1435
            R +    TR L++N +   DI   ++R       L   L E +P E  E        L  
Sbjct: 1324 RRLLRRATRWLLRNRRQPLDIAAEIERFRPGVAALRPQLPELLPGEEREALEERAQALVE 1383

Query: 1436 KGFPPDLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNV 1495
             G P  LA R+  + +L    D+++++E     L  V  ++ A+   LG+D L      +
Sbjct: 1384 AGVPEALARRVAALDYLFSALDIVELAEETGRDLEEVARVYFALGDRLGLDWLREAISAL 1443

Query: 1496 VVDDHYENLALSAGLDWMYSARREMIVKAITTGSSVAT------IMQN----EKWKEVKD 1545
             VDD ++ LA +A  D +Y  +R +    ++     A       +  N    E+W+    
Sbjct: 1444 PVDDRWQRLARAALRDDLYWQQRALTAAVLSGPGEDAEAAVAAWLEANASRLERWR---- 1499

Query: 1546 QVFDILSVEKEVTVAHITVATHLLSGF 1572
            ++   L    E+ +A ++VA   L   
Sbjct: 1500 RMLAELKASGELDLAKLSVALRELRDL 1526


>gnl|CDD|32727 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid
            transport and metabolism].
          Length = 1592

 Score = 1459 bits (3779), Expect = 0.0
 Identities = 670/1575 (42%), Positives = 955/1575 (60%), Gaps = 47/1575 (2%)

Query: 30   ASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWDHSSACCIDIREVEGINPSGISISI 89
               +F  A IDDL +Y   +LA  ++ ++        + A C+ +    G+   G  ++ 
Sbjct: 35   PQKLFSRAPIDDLAEYRASLLAAAALEAFYFLGRRR-AGAPCVRVYP--GVAEHG-PVTA 90

Query: 90   ITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLI 149
            + +++DN+PFL  S++GE+      + + +HPV    ++   +L      G  Q + SL+
Sbjct: 91   LQIVLDNMPFLVDSVMGELTRLGLQIHLLLHPVIDVRRSPKGELLKIGPKGTKQ-RESLM 149

Query: 150  QIHCLKI-TPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFCHLTGIKEYAV- 207
             IH  ++   +    +++ +  ++ Q++    D   MLA LE++        G +  A+ 
Sbjct: 150  HIHIDRLGDAKSLRTLEEAIREVLSQVRRAVNDWPAMLAKLEELIDEL-DARGSRPDALD 208

Query: 208  --EALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKLDHDMPTELGILRDSSIVVLGFD--R 263
              E + FL WL +DNF F+G R    V     ++   +  + LG+LRD  + V   D   
Sbjct: 209  RQEVIAFLRWLGDDNFVFLGYR--EFVVSGGILESLKE--SGLGVLRDEDVSVPRDDDAV 264

Query: 264  VTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGIKHFDERGNLIGELHVVGFFTRLV 323
             T    +  + +  LI+TK+NVIS ++R  YMD+IG+K FD +G +IGE   VG FT   
Sbjct: 265  ETDRINALLDDDKLLILTKANVISRVHRIAYMDYIGVKEFDAKGEVIGEKRFVGLFTSAA 324

Query: 324  YSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCEQ 383
            Y+   S+IPL+R K+ +V       P SHS ++L+N LE YPRDELFQI + LL +    
Sbjct: 325  YNHSVSEIPLIRSKVEEVIARAGLDPESHSGKLLRNVLETYPRDELFQISTELLLTMAYA 384

Query: 384  IIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGH-VAFYSS 442
            ++ + DRPRVR+  R DRF+ F SSL+Y+PRE + S VREKI  YL  V  G    +   
Sbjct: 385  VVKLGDRPRVRLFARADRFDRFISSLVYVPRERYTSEVREKIYQYLKNVFGGRLGEYIPE 444

Query: 443  ILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYK--SAGDGVPRF---- 496
              E  L RIHF++    G+       +LE  +R     W D++ +  SA DG        
Sbjct: 445  FSESPLARIHFIVRYQRGKTIKVDVSALEALLRYYARTWSDRYVEAFSAKDGESVGLALL 504

Query: 497  -----IFSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDGKVQIKIFHARGPF 551
                 IF + +R+ F+P +AV D+  + + +EG+ +  + +E      + +K++H   P 
Sbjct: 505  KHYAAIFPEAYREEFTPAEAVVDIEVLAALSEGEREASLLYEADGPDTLFLKLYHRGKPL 564

Query: 552  SLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALV 611
            +LS  +P+LENLGF VI E TF +      +   V +Y  +LS  +    DL        
Sbjct: 565  ALSDVLPILENLGFRVIEERTFRLG---HADGRPVWIYDFELSSISGIPDDLTALEIRFE 621

Query: 612  EAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNP 671
            EAF  I+  R++ND FN L++L  L   ++++LR+YARYL+QA   +SQ++I   L+K+P
Sbjct: 622  EAFLAIWRGRLENDGFNRLVLLAGLTWRQVALLRAYARYLQQAGFPYSQSYIEATLNKHP 681

Query: 672  TISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTVLRSYVNLISGT 731
             I++ L  LF  RFDPS+ D  +    + +L +I+ AL  VPSLD+D +LR +VNL+  T
Sbjct: 682  DIARSLVDLFDARFDPSIKDSNK--AAEALLDKIEEALDAVPSLDEDRILRRFVNLVKAT 739

Query: 732  LRTNYFQKNQDD---IALVFKFDSRKINSVGTDELHREIFVYGVEVEGVHLRCGKIARGG 788
            LRTNYFQ +      +AL FKFD   I+ +     +REIFVYG EVEGVHLR G +ARGG
Sbjct: 740  LRTNYFQLDGHGTPKVALSFKFDPSLIDELPYPRPYREIFVYGPEVEGVHLRFGPVARGG 799

Query: 789  LRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYK 848
            LRWSDR  D+RTEVLGLV+AQ+VKNAVIVPVGAKGGF  KRLP+ G RD I   G   YK
Sbjct: 800  LRWSDRNQDFRTEVLGLVKAQQVKNAVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYK 859

Query: 849  TYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWL 908
             ++  LL ITDN    +++ P + V LDG+DPY VVAADKGTATFSD AN +A+E  FWL
Sbjct: 860  AFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTATFSDIANSVAREYGFWL 919

Query: 909  DDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG 968
             DAFASGGS GYDHKKMGITARGAWE VKRHFRE+ +D Q++PFTV G+GDMSGDVFGNG
Sbjct: 920  GDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNG 979

Query: 969  MLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIIS 1028
            MLLS+ I+L+AAFDH  IFIDP+P+   +F ERKRLF  P SSW D+D   +SKGG ++S
Sbjct: 980  MLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVS 1039

Query: 1029 RKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIG 1088
            R  KA+ L+PE +A +GI K    P+E+I+AIL A VDLLW GGIGTY++A  E NAD+G
Sbjct: 1040 RSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVG 1099

Query: 1089 DKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148
            D+ N+ +RV  ++VRAKVIGEGANLG+TQ+ R+ ++L GGRIN+DAIDNS GV+CSD EV
Sbjct: 1100 DRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEV 1159

Query: 1149 NIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNF 1208
            NIKIAL SA+  G+LT   RN LL+SMT EV  LVLRNNYLQ+ AISL  R  ++++   
Sbjct: 1160 NIKIALNSAVFAGKLTRGERNALLASMTDEVASLVLRNNYLQTEAISLLERLNLSLITEL 1219

Query: 1209 AQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLDST 1268
            ++ +  L  +G LDRE+E LPS     ER      L+RPE+A+LLAY+KL L E+L+ S 
Sbjct: 1220 SRFISTLEAKGLLDREVEFLPSDAELAERNAAGRGLTRPELAVLLAYSKLALFEELVASE 1279

Query: 1269 LIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSCFVVSLAKE 1328
            + DD +F ++L  YFP +L + Y+ +I +H+L+R I+ATVLAN+++N+GG  FV  L + 
Sbjct: 1280 IPDDSYFDALLSRYFPSRLVKQYANEIRSHRLKREIIATVLANDLVNRGGITFVSRLKEA 1339

Query: 1329 TGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLIFINLTRLLIK 1388
            TG+S  DV+R+ V     + L  +W+E+D LDNQ+ G +QN +Y E+R +    TR L++
Sbjct: 1340 TGASPADVVRAYVAVREIFGLGDIWREIDALDNQVPGAVQNDLYLEVRRLIRRATRWLLR 1399

Query: 1389 NGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPPDLADRIVR 1448
            N     ++G  V+R   A   L   + E +  E              KG P  LA R+  
Sbjct: 1400 NRPQPLNVGAEVERFRAAVKALRPRMSELLVGEDKAAVEARAAGYVEKGVPESLAYRVAT 1459

Query: 1449 MQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNVVVDDHYENLALSA 1508
            +  L  V D+IDI++     +  V   + A+S  LG+D LL  A ++ VDD +++LA   
Sbjct: 1460 LSLLYSVLDIIDIADITGIDVAEVAKAYFAVSDALGLDWLLKAADSLPVDDRWQSLARLR 1519

Query: 1509 GLDWMYSARREMIVKAITTGSSVATIMQNEKWKE--------VKDQVFDILSVEKEVTVA 1560
              D +Y+A+R + +  +  G+     +    W E        V+D + ++      + +A
Sbjct: 1520 LRDDIYAAQRSLTIAVLAPGAKAEDPVA--AWLERDGSRVERVRDMLKEL-KASGTIDLA 1576

Query: 1561 HITVATHLLSGFLLK 1575
             ++VA  LL      
Sbjct: 1577 TLSVAARLLRDLAQT 1591


>gnl|CDD|37461 KOG2250, KOG2250, KOG2250, Glutamate/leucine/phenylalanine/valine
            dehydrogenases [Amino acid transport and metabolism].
          Length = 514

 Score = 55.3 bits (133), Expect = 1e-07
 Identities = 90/439 (20%), Positives = 133/439 (30%), Gaps = 92/439 (20%)

Query: 723  SYVNLISGTLRTNYFQKNQDDIALVFKFD-SRKINSVG-TDELHREIFVYGVEVEGVHLR 780
            +    +     ++ F+K+    A++F+ D   ++             F         H R
Sbjct: 44   ALAEDVLSLELSSKFEKSPLYTAILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNR 103

Query: 781  CGKIARGGLRWS-DRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG--FYPKRLPSEGR 835
                A+GG+R+      D    V  L      KNA+  +P  GAKGG    PK       
Sbjct: 104  ARGPAKGGIRYHPSVNLD---IVKALAFLMTYKNALTDIPYGGAKGGILIDPKGKSD--- 157

Query: 836  RDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSD 895
             +EI +I R     +   L+ I       ++  PD                 +    F +
Sbjct: 158  -NEIERITRR----FTDELIDIIG--PDTDVPAPD-----------IGTGPREMGWIFDE 199

Query: 896  TANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDID--IQSTPFT 953
             A               + GGS    H +   T RG    V+    + +    I+     
Sbjct: 200  YAKTHGHWKAVVTGKPISLGGS----HGRYEATGRGVVYYVEAILNDANGKKGIKGKRVV 255

Query: 954  VAGVGDMSGDVFGNGMLLSRK-IQLVAAFDHSDIFIDP---DPNSETTFDERKRLFDSPS 1009
            + G G            LS K  ++VA  D   + I+P   D        + K+   S  
Sbjct: 256  IQGFG---NVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKS-- 310

Query: 1010 SSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLW 1069
                 FD   LS  G I                                  L+   D+L 
Sbjct: 311  -----FDGAKLSYEGYIAGLP---------------------------PWTLVEKCDILV 338

Query: 1070 FGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGR 1129
                   I    EN   +  KG             K I EGAN+  T +A  V    G  
Sbjct: 339  PCATQNEIT--GENAKALVAKG------------CKYIVEGANMPTTPEADEVLEKAGVL 384

Query: 1130 INSDAIDNSGGVNCSDLEV 1148
            I  D   N+GGV  S  E 
Sbjct: 385  IIPDIYANAGGVTVSYFEW 403


>gnl|CDD|143965 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
            dehydrogenase. 
          Length = 237

 Score = 48.7 bits (117), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 1091 GNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148
             N I    A  ++AK + EGAN+  T +A  +    G     D   N+GGV  S LE+
Sbjct: 120  QNEINEENAKLIKAKAVVEGANMPTTPEADEILEERGILYAPDKAANAGGVTVSYLEM 177


>gnl|CDD|30682 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino
            acid transport and metabolism].
          Length = 411

 Score = 47.6 bits (113), Expect = 3e-05
 Identities = 74/373 (19%), Positives = 123/373 (32%), Gaps = 97/373 (26%)

Query: 785  ARGGLRWSDRAADYRTEVLGLVRAQKVKNAVI-VPVG-AKGG--FYPKRLPSEGRRDEII 840
             +GG+R+         EV  L     +KNA+  +P G  KGG    PK L S+G  + + 
Sbjct: 65   YKGGVRFHP--YVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGL-SDGELERL- 120

Query: 841  KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANIL 900
                 A+   +  L+         +I  PD     +  D  +++         S      
Sbjct: 121  ---SRAFGRAIYRLIG-----PDTDIPAPDVGT--NPQDMAWMMDEYSKIVGNSAPGVFT 170

Query: 901  AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM 960
             +  +         GGS+G    +   T  G +  ++   + +  D++     V G G++
Sbjct: 171  GKPLEL--------GGSLG----RSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNV 218

Query: 961  SGDVFGNGMLLSRKIQ-----LVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDF 1015
                   G   + K+      +VA  D      D D        E K    S        
Sbjct: 219  -------GQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGS-------- 263

Query: 1016 DRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGT 1075
                       ++    A  +T E                    +L    D+L       
Sbjct: 264  -----------VAEYAGAEYITNEE-------------------LLEVDCDIL------- 286

Query: 1076 YIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAI 1135
                P      +    N I    AD+++AK++ EGAN   T +A  +    G  +  D +
Sbjct: 287  ---IP----CALE---NVITEDNADQLKAKIVVEGANGPTTPEADEILLERGILVVPDIL 336

Query: 1136 DNSGGVNCSDLEV 1148
             N+GGV  S LE 
Sbjct: 337  ANAGGVIVSYLEW 349


>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate
            dehydrogenase, subgroup 1.  Amino acid dehydrogenase (DH)
            is a widely distributed family of enzymes that catalyzes
            the oxidative deamination of an amino acid to its keto
            acid and ammonia with concomitant reduction of NADP+.
            Glutamate DH is a multidomain enzyme that catalyzes the
            reaction from glutamate to 2-oxyoglutarate and ammonia in
            the presence of NAD or NADP. It is present in all
            organisms. Enzymes involved in ammonia assimilation are
            typically NADP+-dependent, while those involved in
            glutamate catabolism are generally NAD+-dependent. Amino
            acid DH-like NAD(P)-binding domains are members of the
            Rossmann fold superfamily and include glutamate, leucine,
            and phenylalanine DHs, methylene tetrahydrofolate DH,
            methylene-tetrahydromethanopterin DH,
            methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
            DH-like proteins, malate oxidoreductases, and glutamyl
            tRNA reductase. Amino acid DHs catalyze the deamination
            of amino acids to keto acids with NAD(P)+ as a cofactor.
            The NAD(P)-binding Rossmann fold superfamily includes a
            wide variety of protein families including NAD(P)-
            binding domains of alcohol DHs, tyrosine-dependent
            oxidoreductases, glyceraldehyde-3-phosphate DH,
            lactate/malate DHs, formate/glycerate DHs, siroheme
            synthases, 6-phosphogluconate DH, amino acid DHs,
            repressor rex, NAD-binding potassium channel domain,
            CoA-binding, and ornithine cyclodeaminase-like domains.
            These domains have an alpha -beta-alpha configuration.
            NAD binding involves numerous hydrogen and van der Waals
            contacts.
          Length = 227

 Score = 37.5 bits (88), Expect = 0.028
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 1099 ADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLE 1147
            AD+++AK+I E AN   T +A  +    G  +  D + N+GGV  S  E
Sbjct: 124  ADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDILANAGGVTVSYFE 172


>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate
            dehydrogenase, leucine dehydrogenase, phenylalanine
            dehydrogenase, and valine dehydrogenase.  Amino acid
            dehydrogenase (DH) is a widely distributed family of
            enzymes that catalyzes the oxidative deamination of an
            amino acid to its keto acid and ammonia with concomitant
            reduction of NAD(P)+. This subfamily includes glutamate,
            leucine, phenylalanine, and valine DHs. Glutamate DH is a
            multi-domain enzyme that catalyzes the reaction from
            glutamate to 2-oxyoglutarate and ammonia in the presence
            of NAD or NADP. It is present in all organisms.  Enzymes
            involved in ammonia assimilation are typically
            NADP+-dependent, while those involved in glutamate
            catabolism are generally NAD+-dependent.  As in other
            NAD+-dependent DHs, monomers in this family have 2
            domains separated by a deep cleft. Here the c-terminal
            domain contains a modified NAD-binding Rossmann fold with
            7 rather than the usual 6 beta strands and one strand
            anti-parrallel to the others. Amino acid DH-like
            NAD(P)-binding domains are members of the Rossmann fold
            superfamily and include glutamate, leucine, and
            phenylalanine DHs, methylene tetrahydrofolate DH,
            methylene-tetrahydromethanopterin DH,
            methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
            DH-like proteins, malate oxidoreductases, and glutamyl
            tRNA reductase. Amino acid DHs catalyze the deamination
            of amino acids to keto acids with NAD(P)+ as a cofactor.
            The NAD(P)-binding Rossmann fold superfamily includes a
            wide variety of protein families including NAD(P)-
            binding domains of alcohol DHs, tyrosine-dependent
            oxidoreductases, glyceraldehyde-3-phosphate DH,
            lactate/malate DHs, formate/glycerate DHs, siroheme
            synthases, 6-phosphogluconate DH, amino acid DHs,
            repressor rex, NAD-binding potassium channel  domain,
            CoA-binding, and ornithine cyclodeaminase-like domains.
            These domains have an alpha-beta-alpha configuration. NAD
            binding involves numerous hydrogen and van der Waals
            contacts.
          Length = 217

 Score = 34.1 bits (78), Expect = 0.29
 Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 1032 KAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDK- 1090
            K  +   + +AV      I  P      ++  +V L   GG              I    
Sbjct: 41   KLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVAL---GGSARVKVQDYFPGEAILGLD 97

Query: 1091 ---------GNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGV 1141
                     GN I    A K++AKV+ EGAN   T +A  +    G  +  D + N+GGV
Sbjct: 98   VDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGV 157

Query: 1142 NCSDLE 1147
              S  E
Sbjct: 158  IVSYFE 163


>gnl|CDD|145843 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal
           beta-propeller domain.  This unusual 7-stranded
           beta-propeller domain protects the catalytic triad of
           prolyl oligopeptidase (see pfam00326), excluding larger
           peptides and proteins from proteolysis in the cytosol.
          Length = 412

 Score = 32.3 bits (74), Expect = 1.0
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 471 EEGVRSIVACWEDKFYKSAGDGVPRF-IFSQTFRDVFSPEKAVEDLP------YIISCAE 523
            +GV   V    D FY    DG P F +      D  SP    + +        +     
Sbjct: 274 FDGVYYYVEHEGDTFYFLTNDGAPNFRLVRVDLND-PSPADWKDVIVEHREDVLLEEITV 332

Query: 524 GKEKLRVCFENKEDGKVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEE 583
               L + +  + D   ++++F   G   +     L      +V S           D++
Sbjct: 333 FGNYLVLSY--RRDALSRLQVFD-LGGGGVLFEEFLPGV--GSVSSA------SGEYDDD 381

Query: 584 HLVVLYQMDLSPATIARFDL 603
            L   +   L+P TI   DL
Sbjct: 382 ELRYSFSSFLTPGTIYDLDL 401


>gnl|CDD|35667 KOG0446, KOG0446, KOG0446, Vacuolar sorting protein VPS1, dynamin,
            and related proteins [Intracellular trafficking,
            secretion, and vesicular transport, General function
            prediction only].
          Length = 657

 Score = 32.3 bits (73), Expect = 1.2
 Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 26/231 (11%)

Query: 1261 SEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLR--RAIVATVLANEIINKGG 1318
            S  + + TL+D P    + ++  P  + E     I  +  +  R I+A   AN  I    
Sbjct: 128  SALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI---A 184

Query: 1319 SCFVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLI 1378
            +   + +A+E        +          E+ + +  +DK  N +   L  +        
Sbjct: 185  TSPALVVAREVDPGGSRTL----------EVITKFDFMDKGTNAV-TRLVGRPITLKVGY 233

Query: 1379 FINLTRLL--IKNGKFIGDIGNAVKRLVTAF--HKLNSLLQEKIPVEWL-ERFNNWVTNL 1433
               + R    I   K    I  A+   V +F       +L     V +L      ++ + 
Sbjct: 234  VGVVNRSQSIIDFKK---SILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSH 290

Query: 1434 TNKGFPPDLADRI-VRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGL 1483
                  P+L  +I   ++      + I   +    +   +L +      GL
Sbjct: 291  IRD-QLPELKTKINKLLEKYQDELNRIGAVDVDLANSAALLAIIREDPRGL 340


>gnl|CDD|63858 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein
            (GAP) domain for Rho-like GTPases found in KIAA1688-like
            proteins; KIAA1688 is a protein of unknown function that
            contains a RhoGAP domain and a myosin tail homology 4
            (MyTH4) domain. Small GTPases cluster into distinct
            families, and all act as molecular switches, active in
            their GTP-bound form but inactive when GDP-bound. The Rho
            family of GTPases activates effectors involved in a wide
            variety of developmental processes, including regulation
            of cytoskeleton formation, cell proliferation and the JNK
            signaling pathway. GTPases generally have a low intrinsic
            GTPase hydrolytic activity but there are family-specific
            groups of GAPs that enhance the rate of GTP hydrolysis by
            several orders of magnitude..
          Length = 187

 Score = 31.8 bits (72), Expect = 1.5
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 1253 LAYAKLKLSEQLLDSTLIDDPFFFSILLSYFPRQLSE------LYSEDIMNHQLRRAIVA 1306
            +   KL++ +     + ++DP   + LL  + R+L E      LY + I   +     V 
Sbjct: 53   VNELKLRVDQWDYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASEDPDKAVE 112

Query: 1307 TVLANEIINKGGSCFVVSLAKETGSST 1333
             V    IIN+   C++++  +      
Sbjct: 113  IVQKLPIINRLVLCYLINFLQVFAQPE 139


>gnl|CDD|146333 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential
           Saccharomyces cerevisiae protein, identified from a
           two-hybrid screen, that binds Mps1p, a protein kinase
           essential for spindle pole body duplication and mitotic
           checkpoint regulation. Mob1 contains no known structural
           motifs; however MOB1 is a member of a conserved gene
           family and shares sequence similarity with a
           nonessential yeast gene, MOB2. Mob1 is a phosphoprotein
           in vivo and a substrate for the Mps1p kinase in vitro.
           Conditional alleles of MOB1 cause a late nuclear
           division arrest at restrictive temperature. This family
           also includes phocein, a rat protein that by yeast two
           hybrid interacts with striatin.
          Length = 171

 Score = 31.6 bits (72), Expect = 2.0
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 266 PATRSFPEGNDFLIITKSNVISVIYRRTY--MDHIGIKHFDERGNLIGELHVVGFFTRLV 323
           P     P   +F +I K      I RR +    HI   HFDE   L  E H+   F   V
Sbjct: 99  PTKVGVPFPKNFKLIVKK-----ILRRLFRIFAHIYFHHFDEIVELELETHLNTRFKHFV 153

Query: 324 Y 324
            
Sbjct: 154 S 154


>gnl|CDD|34137 COG4458, SrfC, Uncharacterized protein conserved in bacteria,
            putative virulence factor [Function unknown].
          Length = 821

 Score = 31.2 bits (70), Expect = 2.3
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 1207 NFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLD 1266
            +   +   LG     D E+   P       R+   VSLS  E+ +L A   + LS     
Sbjct: 280  SIMNVETLLGLGTPGDEEILVRPMK---GGRLLPAVSLSLAELTLLAAELVIPLSNP--- 333

Query: 1267 STLIDDPFFFSILLSYFP----RQLSELYSEDIMNHQLRRAIVATVLA 1310
                  P F  + L  FP    RQ  +L +E   N  L+  +V   +A
Sbjct: 334  ----PWPAFDHVDLLDFPGARGRQRIDLLAEFDDNQPLKDLLVRAKVA 377


>gnl|CDD|37253 KOG2042, KOG2042, KOG2042, Ubiquitin fusion degradation protein-2
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 943

 Score = 30.7 bits (69), Expect = 3.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 314 HVVGFFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDEL 369
            +V F T  + S    K P LR K+V+V   L+    S S   +   +E +    L
Sbjct: 551 DIVTFLTVFMTSSMYIKNPYLRAKLVEV---LSMPKPSLSFNAVSRVIEAHENGGL 603


>gnl|CDD|145786 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase,
           dimerization domain. 
          Length = 131

 Score = 30.2 bits (69), Expect = 5.5
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 785 ARGGLR-WSDRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG--FYPKRLPSEGRRDEI 839
           A+GGLR       +   EVL L R    KNA+  +P  G KGG    PK L S+   + +
Sbjct: 35  AKGGLRFHPYVTLE---EVLRLARGMTYKNALAGLPFGGGKGGIIGDPKGL-SDAELERL 90

Query: 840 I-KIGREAYK 848
               GRE   
Sbjct: 91  TRAFGRELES 100


>gnl|CDD|109650 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
           PB1.  Two GTP binding sites exist in this protein.
          Length = 740

 Score = 29.8 bits (67), Expect = 5.6
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 357 LQNTLEFYPRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREY 416
           L+NT+E Y R  L       +  + E +++ +D+P V+           F+      R Y
Sbjct: 145 LKNTIE-YFRQNLTGFRGGTMLDYLEDVMESLDKPEVK-----------FTKHKNNKRRY 192

Query: 417 FD 418
            D
Sbjct: 193 DD 194


>gnl|CDD|35178 COG5619, COG5619, Uncharacterized conserved protein [Function
           unknown].
          Length = 224

 Score = 29.6 bits (66), Expect = 7.4
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 343 NLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRF 402
            L+       +  +LQ+ L F+P   L            + +    +    R++P + RF
Sbjct: 79  ALVQMMYRLENDGILQHRLGFFPAPHLLPFQDDPDTYVYDALFI--EIVARRIVPFLLRF 136

Query: 403 NHFFSSLIYIPREYFDS 419
           +      I +   +  S
Sbjct: 137 DFDPREDIRVDGAHPKS 153


>gnl|CDD|36325 KOG1109, KOG1109, KOG1109, Vacuole membrane protein VMP1 [General
           function prediction only].
          Length = 440

 Score = 29.6 bits (66), Expect = 7.8
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 29/131 (22%)

Query: 365 PRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIY--IPREYFDS--- 419
           P DE +      L    E  +  + R +  V  ++ R   FF  LI   IP   FD    
Sbjct: 240 PDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLG-FFGILICASIPNPLFDLAGI 298

Query: 420 ------------FVREKIGNYLSEVCEGHV-------AFYSSILEEGLVRIHFVIVRSGG 460
                       F    IG  + ++   H+       AF   + EE  V I   +   G 
Sbjct: 299 TCGHFLVPFWTFFGATLIGKAIIKM---HIQKIFVIIAFNIHLFEE-RVSILDTVPGLGH 354

Query: 461 EISHPSQESLE 471
            +  P +  LE
Sbjct: 355 RLREPFRWLLE 365


>gnl|CDD|37400 KOG2189, KOG2189, KOG2189, Vacuolar H+-ATPase V0 sector, subunit a
           [Energy production and conversion].
          Length = 829

 Score = 29.1 bits (65), Expect = 10.0
 Identities = 14/79 (17%), Positives = 36/79 (45%)

Query: 143 QKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFCHLTGI 202
           + +I    I    +         +++I + EQL+ +  + RE+ A+ E ++ ++  L  +
Sbjct: 69  ESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLEL 128

Query: 203 KEYAVEALTFLNWLNEDNF 221
           K    +   F +   +++F
Sbjct: 129 KYVLEKTDEFFSTSVQESF 147


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0826    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 19,167,485
Number of extensions: 1077072
Number of successful extensions: 2432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2412
Number of HSP's successfully gapped: 35
Length of query: 1576
Length of database: 6,263,737
Length adjustment: 107
Effective length of query: 1469
Effective length of database: 3,951,574
Effective search space: 5804862206
Effective search space used: 5804862206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.2 bits)