RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (1576 letters) >gnl|CDD|147324 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia. Length = 1526 Score = 1742 bits (4515), Expect = 0.0 Identities = 647/1527 (42%), Positives = 900/1527 (58%), Gaps = 55/1527 (3%) Query: 86 SISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQ-K 144 + +++ ++ D++PFL S+ E+ + + +HPV ++ D +L + Sbjct: 15 THTVVEIVNDDMPFLVDSVTMELNRLGLTIHLLLHPVLRVRRDKDGELTEVLPADDSGGL 74 Query: 145 QISLIQIHCLKITPEEAIE-IKKQLIFIIEQLKLVSQDSREMLASLEKMQKSF--CHLTG 201 + SLI I ++T E +E ++++L ++ ++ +D M A L ++ Sbjct: 75 RESLIHIEIDRLTDAEELEALEEELERVLADVRAAVEDWPAMRARLRELAAELATAPPPV 134 Query: 202 IKEYAVEALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKLDHDMPTELGILRDSSIVVLG- 260 E EA FL WL +D+F F+G R + L A + L + LGILRD S++ G Sbjct: 135 DAEELEEAAAFLRWLADDHFTFLGYREYDLEADGGGLVLRAVPGSGLGILRDVSVLRRGR 194 Query: 261 -FDRVTP-ATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGIKHFDERGNLIGELHVVGF 318 + P + E + LI+TK+N S ++R Y+D+IG+K FD G +IGE +G Sbjct: 195 DLAALPPEERAAALESPELLIVTKANSRSRVHRPAYLDYIGVKRFDADGEVIGEHRFLGL 254 Query: 319 FTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLA 378 FT Y+Q +IPLLR K+ +V F P SHS + L N LE YPRDELFQI L Sbjct: 255 FTSAAYTQSPREIPLLRRKVERVLERSGFDPGSHSGKALLNILETYPRDELFQISEDELL 314 Query: 379 SFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGH-V 437 I+ + +RPRVR+ R D F F S L+Y+PR+ +++ +R +I + L+E G V Sbjct: 315 EIAMGILSLQERPRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRLRIQDILAEALGGTSV 374 Query: 438 AFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYKSAGDGVP--- 494 F + E L R+HF++ G LE + WED+ + + Sbjct: 375 EFTTQFSESPLARVHFIVRVDPGAEPDVDVAELEARLAEAARSWEDRLQDALLEAFGEER 434 Query: 495 ------RFI--FSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCF---ENKEDGKVQIK 543 R+ F ++R+ FSP +AV D+ + + + L V E G +++K Sbjct: 435 GAALARRYADAFPASYREDFSPREAVADIERLEALSAE-GPLAVRLYRPLEAEPGSLRLK 493 Query: 544 IFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDL 603 ++HA P LS +P+LENLG VI E +E+ + V ++ L DL Sbjct: 494 LYHAGEPLPLSDVLPVLENLGLRVIDERPYEV----RPDGRRVWIHDFGLELPGGGPIDL 549 Query: 604 VDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFI 663 + R+ EAF +++ R +ND FN L++ L E++VLR+YARYLRQ +SQ++I Sbjct: 550 DEVRERFEEAFAAVWNGRAENDGFNRLVLAAGLSWREVAVLRAYARYLRQTGFPFSQDYI 609 Query: 664 ARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTVLRS 723 LS++P I++LL +LF RFDP+ +++R + I+ AL V SLD+D +LR Sbjct: 610 EDTLSRHPDIARLLVALFEARFDPA-LEEDREAKAAALRAAIEEALDAVASLDEDRILRR 668 Query: 724 YVNLISGTLRTNYFQKNQDDI---ALVFKFDSRKINSVGTDEL-----HREIFVYGVEVE 775 Y+NLI TLRTN++Q++ D L FK D KI +L EIFVY VE Sbjct: 669 YLNLIDATLRTNFYQRDADGQPKPYLSFKLDPAKI-----PDLPLPRPWFEIFVYSPRVE 723 Query: 776 GVHLRCGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGR 835 GVHLR GK+ARGGLRWSDR D+RTEVLGLV+AQ VKNAVIVPVGAKGGF KRLP G Sbjct: 724 GVHLRGGKVARGGLRWSDRREDFRTEVLGLVKAQMVKNAVIVPVGAKGGFVVKRLPDPGD 783 Query: 836 RDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSD 895 R+ + G YKT++R LL ITDN E++ P + V DG+DPY VVAADKGTATFSD Sbjct: 784 REAWMAEGIACYKTFIRGLLDITDNLVDGEVVPPADVVRHDGDDPYLVVAADKGTATFSD 843 Query: 896 TANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVA 955 AN +A E FWL DAFASGGS+GYDHKKMGITARGAWE+VKRHFREM IDIQ+ PFTV Sbjct: 844 IANAIAAEYGFWLGDAFASGGSVGYDHKKMGITARGAWESVKRHFREMGIDIQTEPFTVV 903 Query: 956 GVGDMSGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDF 1015 G+GDMSGDVFGNGMLLS I+LVAAFDH IFIDPDP+ +F ERKRLF+ P SSW D+ Sbjct: 904 GIGDMSGDVFGNGMLLSEHIRLVAAFDHRHIFIDPDPDPAKSFAERKRLFELPRSSWADY 963 Query: 1016 DRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGT 1075 D+ ++SKGG + SR K++ L+PE A +GI K TP+E+I AIL A VDLLW GGIGT Sbjct: 964 DKSLISKGGGVFSRSAKSIPLSPEVRAALGIEKDSLTPNELIRAILKAPVDLLWNGGIGT 1023 Query: 1076 YIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAI 1135 Y++A E +AD+GD+ N+ LRV ++RAKV+GEG NLG+TQ R+ Y+LNGGRIN+DAI Sbjct: 1024 YVKASTETHADVGDRANDALRVNGRELRAKVVGEGGNLGVTQLGRIEYALNGGRINTDAI 1083 Query: 1136 DNSGGVNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAIS 1195 DNS GV+CSD EVNIKI L S +R G LT + RN LL+SMT EV ELVLR+NYLQ+LA+S Sbjct: 1084 DNSAGVDCSDHEVNIKILLNSLVRAGDLTRKQRNALLASMTDEVAELVLRDNYLQTLALS 1143 Query: 1196 LESRKGMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAY 1255 L + A + A+L+ L KEG LDR LE LPS ER L+RPE+A+LLAY Sbjct: 1144 LAEARAAARLEEHARLIDTLEKEGRLDRALEFLPSDEELAERAAAGQGLTRPELAVLLAY 1203 Query: 1256 AKLKLSEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIIN 1315 AKL L ++LL S L DDP+ +LL YFP L E +++ I +H LRR I+ATVLAN+I+N Sbjct: 1204 AKLVLKDELLASDLPDDPYLARLLLDYFPPPLRERFADAIESHPLRREIIATVLANDIVN 1263 Query: 1316 KGGSCFVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEI 1375 + G FV LA+ETG+S DV R+ V A + L +LW E++ LDN++ +Q ++ E+ Sbjct: 1264 RMGITFVFRLAEETGASVADVARAYVAAREIFGLPALWDEIEALDNKVPAAVQLRLLLEL 1323 Query: 1376 RLIFINLTRLLIKNGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTN 1435 R + TR L++N + DI ++R L L E +P E E L Sbjct: 1324 RRLLRRATRWLLRNRRQPLDIAAEIERFRPGVAALRPQLPELLPGEEREALEERAQALVE 1383 Query: 1436 KGFPPDLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNV 1495 G P LA R+ + +L D+++++E L V ++ A+ LG+D L + Sbjct: 1384 AGVPEALARRVAALDYLFSALDIVELAEETGRDLEEVARVYFALGDRLGLDWLREAISAL 1443 Query: 1496 VVDDHYENLALSAGLDWMYSARREMIVKAITTGSSVAT------IMQN----EKWKEVKD 1545 VDD ++ LA +A D +Y +R + ++ A + N E+W+ Sbjct: 1444 PVDDRWQRLARAALRDDLYWQQRALTAAVLSGPGEDAEAAVAAWLEANASRLERWR---- 1499 Query: 1546 QVFDILSVEKEVTVAHITVATHLLSGF 1572 ++ L E+ +A ++VA L Sbjct: 1500 RMLAELKASGELDLAKLSVALRELRDL 1526 >gnl|CDD|32727 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]. Length = 1592 Score = 1459 bits (3779), Expect = 0.0 Identities = 670/1575 (42%), Positives = 955/1575 (60%), Gaps = 47/1575 (2%) Query: 30 ASAMFGEASIDDLEKYTPQMLALTSVVSYDIFAGWDHSSACCIDIREVEGINPSGISISI 89 +F A IDDL +Y +LA ++ ++ + A C+ + G+ G ++ Sbjct: 35 PQKLFSRAPIDDLAEYRASLLAAAALEAFYFLGRRR-AGAPCVRVYP--GVAEHG-PVTA 90 Query: 90 ITVIVDNIPFLYQSIIGEIVARCRNLTMAVHPVFTKDKNCDWQLYSPESCGIAQKQISLI 149 + +++DN+PFL S++GE+ + + +HPV ++ +L G Q + SL+ Sbjct: 91 LQIVLDNMPFLVDSVMGELTRLGLQIHLLLHPVIDVRRSPKGELLKIGPKGTKQ-RESLM 149 Query: 150 QIHCLKI-TPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFCHLTGIKEYAV- 207 IH ++ + +++ + ++ Q++ D MLA LE++ G + A+ Sbjct: 150 HIHIDRLGDAKSLRTLEEAIREVLSQVRRAVNDWPAMLAKLEELIDEL-DARGSRPDALD 208 Query: 208 --EALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKLDHDMPTELGILRDSSIVVLGFD--R 263 E + FL WL +DNF F+G R V ++ + + LG+LRD + V D Sbjct: 209 RQEVIAFLRWLGDDNFVFLGYR--EFVVSGGILESLKE--SGLGVLRDEDVSVPRDDDAV 264 Query: 264 VTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGIKHFDERGNLIGELHVVGFFTRLV 323 T + + + LI+TK+NVIS ++R YMD+IG+K FD +G +IGE VG FT Sbjct: 265 ETDRINALLDDDKLLILTKANVISRVHRIAYMDYIGVKEFDAKGEVIGEKRFVGLFTSAA 324 Query: 324 YSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCEQ 383 Y+ S+IPL+R K+ +V P SHS ++L+N LE YPRDELFQI + LL + Sbjct: 325 YNHSVSEIPLIRSKVEEVIARAGLDPESHSGKLLRNVLETYPRDELFQISTELLLTMAYA 384 Query: 384 IIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSFVREKIGNYLSEVCEGH-VAFYSS 442 ++ + DRPRVR+ R DRF+ F SSL+Y+PRE + S VREKI YL V G + Sbjct: 385 VVKLGDRPRVRLFARADRFDRFISSLVYVPRERYTSEVREKIYQYLKNVFGGRLGEYIPE 444 Query: 443 ILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVACWEDKFYK--SAGDGVPRF---- 496 E L RIHF++ G+ +LE +R W D++ + SA DG Sbjct: 445 FSESPLARIHFIVRYQRGKTIKVDVSALEALLRYYARTWSDRYVEAFSAKDGESVGLALL 504 Query: 497 -----IFSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDGKVQIKIFHARGPF 551 IF + +R+ F+P +AV D+ + + +EG+ + + +E + +K++H P Sbjct: 505 KHYAAIFPEAYREEFTPAEAVVDIEVLAALSEGEREASLLYEADGPDTLFLKLYHRGKPL 564 Query: 552 SLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIARFDLVDRRDALV 611 +LS +P+LENLGF VI E TF + + V +Y +LS + DL Sbjct: 565 ALSDVLPILENLGFRVIEERTFRLG---HADGRPVWIYDFELSSISGIPDDLTALEIRFE 621 Query: 612 EAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQNFIARVLSKNP 671 EAF I+ R++ND FN L++L L ++++LR+YARYL+QA +SQ++I L+K+P Sbjct: 622 EAFLAIWRGRLENDGFNRLVLLAGLTWRQVALLRAYARYLQQAGFPYSQSYIEATLNKHP 681 Query: 672 TISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTVLRSYVNLISGT 731 I++ L LF RFDPS+ D + + +L +I+ AL VPSLD+D +LR +VNL+ T Sbjct: 682 DIARSLVDLFDARFDPSIKDSNK--AAEALLDKIEEALDAVPSLDEDRILRRFVNLVKAT 739 Query: 732 LRTNYFQKNQDD---IALVFKFDSRKINSVGTDELHREIFVYGVEVEGVHLRCGKIARGG 788 LRTNYFQ + +AL FKFD I+ + +REIFVYG EVEGVHLR G +ARGG Sbjct: 740 LRTNYFQLDGHGTPKVALSFKFDPSLIDELPYPRPYREIFVYGPEVEGVHLRFGPVARGG 799 Query: 789 LRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGREAYK 848 LRWSDR D+RTEVLGLV+AQ+VKNAVIVPVGAKGGF KRLP+ G RD I G YK Sbjct: 800 LRWSDRNQDFRTEVLGLVKAQQVKNAVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYK 859 Query: 849 TYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANILAQEAKFWL 908 ++ LL ITDN +++ P + V LDG+DPY VVAADKGTATFSD AN +A+E FWL Sbjct: 860 AFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTATFSDIANSVAREYGFWL 919 Query: 909 DDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDMSGDVFGNG 968 DAFASGGS GYDHKKMGITARGAWE VKRHFRE+ +D Q++PFTV G+GDMSGDVFGNG Sbjct: 920 GDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNG 979 Query: 969 MLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVLSKGGMIIS 1028 MLLS+ I+L+AAFDH IFIDP+P+ +F ERKRLF P SSW D+D +SKGG ++S Sbjct: 980 MLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVS 1039 Query: 1029 RKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIG 1088 R KA+ L+PE +A +GI K P+E+I+AIL A VDLLW GGIGTY++A E NAD+G Sbjct: 1040 RSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVG 1099 Query: 1089 DKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148 D+ N+ +RV ++VRAKVIGEGANLG+TQ+ R+ ++L GGRIN+DAIDNS GV+CSD EV Sbjct: 1100 DRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEV 1159 Query: 1149 NIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNF 1208 NIKIAL SA+ G+LT RN LL+SMT EV LVLRNNYLQ+ AISL R ++++ Sbjct: 1160 NIKIALNSAVFAGKLTRGERNALLASMTDEVASLVLRNNYLQTEAISLLERLNLSLITEL 1219 Query: 1209 AQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLDST 1268 ++ + L +G LDRE+E LPS ER L+RPE+A+LLAY+KL L E+L+ S Sbjct: 1220 SRFISTLEAKGLLDREVEFLPSDAELAERNAAGRGLTRPELAVLLAYSKLALFEELVASE 1279 Query: 1269 LIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSCFVVSLAKE 1328 + DD +F ++L YFP +L + Y+ +I +H+L+R I+ATVLAN+++N+GG FV L + Sbjct: 1280 IPDDSYFDALLSRYFPSRLVKQYANEIRSHRLKREIIATVLANDLVNRGGITFVSRLKEA 1339 Query: 1329 TGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLIFINLTRLLIK 1388 TG+S DV+R+ V + L +W+E+D LDNQ+ G +QN +Y E+R + TR L++ Sbjct: 1340 TGASPADVVRAYVAVREIFGLGDIWREIDALDNQVPGAVQNDLYLEVRRLIRRATRWLLR 1399 Query: 1389 NGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPPDLADRIVR 1448 N ++G V+R A L + E + E KG P LA R+ Sbjct: 1400 NRPQPLNVGAEVERFRAAVKALRPRMSELLVGEDKAAVEARAAGYVEKGVPESLAYRVAT 1459 Query: 1449 MQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNVVVDDHYENLALSA 1508 + L V D+IDI++ + V + A+S LG+D LL A ++ VDD +++LA Sbjct: 1460 LSLLYSVLDIIDIADITGIDVAEVAKAYFAVSDALGLDWLLKAADSLPVDDRWQSLARLR 1519 Query: 1509 GLDWMYSARREMIVKAITTGSSVATIMQNEKWKE--------VKDQVFDILSVEKEVTVA 1560 D +Y+A+R + + + G+ + W E V+D + ++ + +A Sbjct: 1520 LRDDIYAAQRSLTIAVLAPGAKAEDPVA--AWLERDGSRVERVRDMLKEL-KASGTIDLA 1576 Query: 1561 HITVATHLLSGFLLK 1575 ++VA LL Sbjct: 1577 TLSVAARLLRDLAQT 1591 >gnl|CDD|37461 KOG2250, KOG2250, KOG2250, Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]. Length = 514 Score = 55.3 bits (133), Expect = 1e-07 Identities = 90/439 (20%), Positives = 133/439 (30%), Gaps = 92/439 (20%) Query: 723 SYVNLISGTLRTNYFQKNQDDIALVFKFD-SRKINSVG-TDELHREIFVYGVEVEGVHLR 780 + + ++ F+K+ A++F+ D ++ F H R Sbjct: 44 ALAEDVLSLELSSKFEKSPLYTAILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNR 103 Query: 781 CGKIARGGLRWS-DRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG--FYPKRLPSEGR 835 A+GG+R+ D V L KNA+ +P GAKGG PK Sbjct: 104 ARGPAKGGIRYHPSVNLD---IVKALAFLMTYKNALTDIPYGGAKGGILIDPKGKSD--- 157 Query: 836 RDEIIKIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSD 895 +EI +I R + L+ I ++ PD + F + Sbjct: 158 -NEIERITRR----FTDELIDIIG--PDTDVPAPD-----------IGTGPREMGWIFDE 199 Query: 896 TANILAQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDID--IQSTPFT 953 A + GGS H + T RG V+ + + I+ Sbjct: 200 YAKTHGHWKAVVTGKPISLGGS----HGRYEATGRGVVYYVEAILNDANGKKGIKGKRVV 255 Query: 954 VAGVGDMSGDVFGNGMLLSRK-IQLVAAFDHSDIFIDP---DPNSETTFDERKRLFDSPS 1009 + G G LS K ++VA D + I+P D + K+ S Sbjct: 256 IQGFG---NVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKS-- 310 Query: 1010 SSWQDFDRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLW 1069 FD LS G I L+ D+L Sbjct: 311 -----FDGAKLSYEGYIAGLP---------------------------PWTLVEKCDILV 338 Query: 1070 FGGIGTYIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGR 1129 I EN + KG K I EGAN+ T +A V G Sbjct: 339 PCATQNEIT--GENAKALVAKG------------CKYIVEGANMPTTPEADEVLEKAGVL 384 Query: 1130 INSDAIDNSGGVNCSDLEV 1148 I D N+GGV S E Sbjct: 385 IIPDIYANAGGVTVSYFEW 403 >gnl|CDD|143965 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Length = 237 Score = 48.7 bits (117), Expect = 1e-05 Identities = 20/58 (34%), Positives = 28/58 (48%) Query: 1091 GNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLEV 1148 N I A ++AK + EGAN+ T +A + G D N+GGV S LE+ Sbjct: 120 QNEINEENAKLIKAKAVVEGANMPTTPEADEILEERGILYAPDKAANAGGVTVSYLEM 177 >gnl|CDD|30682 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]. Length = 411 Score = 47.6 bits (113), Expect = 3e-05 Identities = 74/373 (19%), Positives = 123/373 (32%), Gaps = 97/373 (26%) Query: 785 ARGGLRWSDRAADYRTEVLGLVRAQKVKNAVI-VPVG-AKGG--FYPKRLPSEGRRDEII 840 +GG+R+ EV L +KNA+ +P G KGG PK L S+G + + Sbjct: 65 YKGGVRFHP--YVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGL-SDGELERL- 120 Query: 841 KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANIL 900 A+ + L+ +I PD + D +++ S Sbjct: 121 ---SRAFGRAIYRLIG-----PDTDIPAPDVGT--NPQDMAWMMDEYSKIVGNSAPGVFT 170 Query: 901 AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM 960 + + GGS+G + T G + ++ + + D++ V G G++ Sbjct: 171 GKPLEL--------GGSLG----RSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNV 218 Query: 961 SGDVFGNGMLLSRKIQ-----LVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDF 1015 G + K+ +VA D D D E K S Sbjct: 219 -------GQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGS-------- 263 Query: 1016 DRKVLSKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGT 1075 ++ A +T E +L D+L Sbjct: 264 -----------VAEYAGAEYITNEE-------------------LLEVDCDIL------- 286 Query: 1076 YIRAPRENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAI 1135 P + N I AD+++AK++ EGAN T +A + G + D + Sbjct: 287 ---IP----CALE---NVITEDNADQLKAKIVVEGANGPTTPEADEILLERGILVVPDIL 336 Query: 1136 DNSGGVNCSDLEV 1148 N+GGV S LE Sbjct: 337 ANAGGVIVSYLEW 349 >gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227 Score = 37.5 bits (88), Expect = 0.028 Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 1099 ADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGVNCSDLE 1147 AD+++AK+I E AN T +A + G + D + N+GGV S E Sbjct: 124 ADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDILANAGGVTVSYFE 172 >gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parrallel to the others. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 217 Score = 34.1 bits (78), Expect = 0.29 Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 13/126 (10%) Query: 1032 KAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAPRENNADIGDK- 1090 K + + +AV I P ++ +V L GG I Sbjct: 41 KLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVAL---GGSARVKVQDYFPGEAILGLD 97 Query: 1091 ---------GNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGGV 1141 GN I A K++AKV+ EGAN T +A + G + D + N+GGV Sbjct: 98 VDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGV 157 Query: 1142 NCSDLE 1147 S E Sbjct: 158 IVSYFE 163 >gnl|CDD|145843 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain. This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 Score = 32.3 bits (74), Expect = 1.0 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 19/140 (13%) Query: 471 EEGVRSIVACWEDKFYKSAGDGVPRF-IFSQTFRDVFSPEKAVEDLP------YIISCAE 523 +GV V D FY DG P F + D SP + + + Sbjct: 274 FDGVYYYVEHEGDTFYFLTNDGAPNFRLVRVDLND-PSPADWKDVIVEHREDVLLEEITV 332 Query: 524 GKEKLRVCFENKEDGKVQIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEE 583 L + + + D ++++F G + L +V S D++ Sbjct: 333 FGNYLVLSY--RRDALSRLQVFD-LGGGGVLFEEFLPGV--GSVSSA------SGEYDDD 381 Query: 584 HLVVLYQMDLSPATIARFDL 603 L + L+P TI DL Sbjct: 382 ELRYSFSSFLTPGTIYDLDL 401 >gnl|CDD|35667 KOG0446, KOG0446, KOG0446, Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport, General function prediction only]. Length = 657 Score = 32.3 bits (73), Expect = 1.2 Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 26/231 (11%) Query: 1261 SEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLR--RAIVATVLANEIINKGG 1318 S + + TL+D P + ++ P + E I + + R I+A AN I Sbjct: 128 SALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI---A 184 Query: 1319 SCFVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLI 1378 + + +A+E + E+ + + +DK N + L + Sbjct: 185 TSPALVVAREVDPGGSRTL----------EVITKFDFMDKGTNAV-TRLVGRPITLKVGY 233 Query: 1379 FINLTRLL--IKNGKFIGDIGNAVKRLVTAF--HKLNSLLQEKIPVEWL-ERFNNWVTNL 1433 + R I K I A+ V +F +L V +L ++ + Sbjct: 234 VGVVNRSQSIIDFKK---SILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSH 290 Query: 1434 TNKGFPPDLADRI-VRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGL 1483 P+L +I ++ + I + + +L + GL Sbjct: 291 IRD-QLPELKTKINKLLEKYQDELNRIGAVDVDLANSAALLAIIREDPRGL 340 >gnl|CDD|63858 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.. Length = 187 Score = 31.8 bits (72), Expect = 1.5 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Query: 1253 LAYAKLKLSEQLLDSTLIDDPFFFSILLSYFPRQLSE------LYSEDIMNHQLRRAIVA 1306 + KL++ + + ++DP + LL + R+L E LY + I + V Sbjct: 53 VNELKLRVDQWDYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASEDPDKAVE 112 Query: 1307 TVLANEIINKGGSCFVVSLAKETGSST 1333 V IIN+ C++++ + Sbjct: 113 IVQKLPIINRLVLCYLINFLQVFAQPE 139 >gnl|CDD|146333 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is an essential Saccharomyces cerevisiae protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature. This family also includes phocein, a rat protein that by yeast two hybrid interacts with striatin. Length = 171 Score = 31.6 bits (72), Expect = 2.0 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 7/61 (11%) Query: 266 PATRSFPEGNDFLIITKSNVISVIYRRTY--MDHIGIKHFDERGNLIGELHVVGFFTRLV 323 P P +F +I K I RR + HI HFDE L E H+ F V Sbjct: 99 PTKVGVPFPKNFKLIVKK-----ILRRLFRIFAHIYFHHFDEIVELELETHLNTRFKHFV 153 Query: 324 Y 324 Sbjct: 154 S 154 >gnl|CDD|34137 COG4458, SrfC, Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]. Length = 821 Score = 31.2 bits (70), Expect = 2.3 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 14/108 (12%) Query: 1207 NFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKLSEQLLD 1266 + + LG D E+ P R+ VSLS E+ +L A + LS Sbjct: 280 SIMNVETLLGLGTPGDEEILVRPMK---GGRLLPAVSLSLAELTLLAAELVIPLSNP--- 333 Query: 1267 STLIDDPFFFSILLSYFP----RQLSELYSEDIMNHQLRRAIVATVLA 1310 P F + L FP RQ +L +E N L+ +V +A Sbjct: 334 ----PWPAFDHVDLLDFPGARGRQRIDLLAEFDDNQPLKDLLVRAKVA 377 >gnl|CDD|37253 KOG2042, KOG2042, KOG2042, Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]. Length = 943 Score = 30.7 bits (69), Expect = 3.2 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 314 HVVGFFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNTLEFYPRDEL 369 +V F T + S K P LR K+V+V L+ S S + +E + L Sbjct: 551 DIVTFLTVFMTSSMYIKNPYLRAKLVEV---LSMPKPSLSFNAVSRVIEAHENGGL 603 >gnl|CDD|145786 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerization domain. Length = 131 Score = 30.2 bits (69), Expect = 5.5 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Query: 785 ARGGLR-WSDRAADYRTEVLGLVRAQKVKNAVI-VPV-GAKGG--FYPKRLPSEGRRDEI 839 A+GGLR + EVL L R KNA+ +P G KGG PK L S+ + + Sbjct: 35 AKGGLRFHPYVTLE---EVLRLARGMTYKNALAGLPFGGGKGGIIGDPKGL-SDAELERL 90 Query: 840 I-KIGREAYK 848 GRE Sbjct: 91 TRAFGRELES 100 >gnl|CDD|109650 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit PB1. Two GTP binding sites exist in this protein. Length = 740 Score = 29.8 bits (67), Expect = 5.6 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 12/62 (19%) Query: 357 LQNTLEFYPRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREY 416 L+NT+E Y R L + + E +++ +D+P V+ F+ R Y Sbjct: 145 LKNTIE-YFRQNLTGFRGGTMLDYLEDVMESLDKPEVK-----------FTKHKNNKRRY 192 Query: 417 FD 418 D Sbjct: 193 DD 194 >gnl|CDD|35178 COG5619, COG5619, Uncharacterized conserved protein [Function unknown]. Length = 224 Score = 29.6 bits (66), Expect = 7.4 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 343 NLLNFHPNSHSSRMLQNTLEFYPRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRF 402 L+ + +LQ+ L F+P L + + + R++P + RF Sbjct: 79 ALVQMMYRLENDGILQHRLGFFPAPHLLPFQDDPDTYVYDALFI--EIVARRIVPFLLRF 136 Query: 403 NHFFSSLIYIPREYFDS 419 + I + + S Sbjct: 137 DFDPREDIRVDGAHPKS 153 >gnl|CDD|36325 KOG1109, KOG1109, KOG1109, Vacuole membrane protein VMP1 [General function prediction only]. Length = 440 Score = 29.6 bits (66), Expect = 7.8 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 29/131 (22%) Query: 365 PRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIY--IPREYFDS--- 419 P DE + L E + + R + V ++ R FF LI IP FD Sbjct: 240 PDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLG-FFGILICASIPNPLFDLAGI 298 Query: 420 ------------FVREKIGNYLSEVCEGHV-------AFYSSILEEGLVRIHFVIVRSGG 460 F IG + ++ H+ AF + EE V I + G Sbjct: 299 TCGHFLVPFWTFFGATLIGKAIIKM---HIQKIFVIIAFNIHLFEE-RVSILDTVPGLGH 354 Query: 461 EISHPSQESLE 471 + P + LE Sbjct: 355 RLREPFRWLLE 365 >gnl|CDD|37400 KOG2189, KOG2189, KOG2189, Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]. Length = 829 Score = 29.1 bits (65), Expect = 10.0 Identities = 14/79 (17%), Positives = 36/79 (45%) Query: 143 QKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFCHLTGI 202 + +I I + +++I + EQL+ + + RE+ A+ E ++ ++ L + Sbjct: 69 ESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLEL 128 Query: 203 KEYAVEALTFLNWLNEDNF 221 K + F + +++F Sbjct: 129 KYVLEKTDEFFSTSVQESF 147 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.138 0.397 Gapped Lambda K H 0.267 0.0826 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 19,167,485 Number of extensions: 1077072 Number of successful extensions: 2432 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2412 Number of HSP's successfully gapped: 35 Length of query: 1576 Length of database: 6,263,737 Length adjustment: 107 Effective length of query: 1469 Effective length of database: 3,951,574 Effective search space: 5804862206 Effective search space used: 5804862206 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (28.2 bits)