BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
         (1576 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1576

 Score = 3234 bits (8384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1576/1576 (100%), Positives = 1576/1576 (100%)

Query: 1    MVISRDLKRSKIIGDVDIAIAILGLPSFSASAMFGEASIDDLEKYTPQMLALTSVVSYDI 60
            MVISRDLKRSKIIGDVDIAIAILGLPSFSASAMFGEASIDDLEKYTPQMLALTSVVSYDI
Sbjct: 1    MVISRDLKRSKIIGDVDIAIAILGLPSFSASAMFGEASIDDLEKYTPQMLALTSVVSYDI 60

Query: 61   FAGWDHSSACCIDIREVEGINPSGISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVH 120
            FAGWDHSSACCIDIREVEGINPSGISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVH
Sbjct: 61   FAGWDHSSACCIDIREVEGINPSGISISIITVIVDNIPFLYQSIIGEIVARCRNLTMAVH 120

Query: 121  PVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQ 180
            PVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQ
Sbjct: 121  PVFTKDKNCDWQLYSPESCGIAQKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQ 180

Query: 181  DSREMLASLEKMQKSFCHLTGIKEYAVEALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKL 240
            DSREMLASLEKMQKSFCHLTGIKEYAVEALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKL
Sbjct: 181  DSREMLASLEKMQKSFCHLTGIKEYAVEALTFLNWLNEDNFQFMGMRYHPLVAGQKQVKL 240

Query: 241  DHDMPTELGILRDSSIVVLGFDRVTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGI 300
            DHDMPTELGILRDSSIVVLGFDRVTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGI
Sbjct: 241  DHDMPTELGILRDSSIVVLGFDRVTPATRSFPEGNDFLIITKSNVISVIYRRTYMDHIGI 300

Query: 301  KHFDERGNLIGELHVVGFFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNT 360
            KHFDERGNLIGELHVVGFFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNT
Sbjct: 301  KHFDERGNLIGELHVVGFFTRLVYSQRASKIPLLREKIVKVQNLLNFHPNSHSSRMLQNT 360

Query: 361  LEFYPRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSF 420
            LEFYPRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSF
Sbjct: 361  LEFYPRDELFQIDSTLLASFCEQIIDIMDRPRVRVLPRIDRFNHFFSSLIYIPREYFDSF 420

Query: 421  VREKIGNYLSEVCEGHVAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVAC 480
            VREKIGNYLSEVCEGHVAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVAC
Sbjct: 421  VREKIGNYLSEVCEGHVAFYSSILEEGLVRIHFVIVRSGGEISHPSQESLEEGVRSIVAC 480

Query: 481  WEDKFYKSAGDGVPRFIFSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDGKV 540
            WEDKFYKSAGDGVPRFIFSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDGKV
Sbjct: 481  WEDKFYKSAGDGVPRFIFSQTFRDVFSPEKAVEDLPYIISCAEGKEKLRVCFENKEDGKV 540

Query: 541  QIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIAR 600
            QIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIAR
Sbjct: 541  QIKIFHARGPFSLSKRVPLLENLGFTVISEDTFEIKMLADDEEHLVVLYQMDLSPATIAR 600

Query: 601  FDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQ 660
            FDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQ
Sbjct: 601  FDLVDRRDALVEAFKYIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYLRQASVTWSQ 660

Query: 661  NFIARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTV 720
            NFIARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTV
Sbjct: 661  NFIARVLSKNPTISQLLFSLFRYRFDPSLSDQERGENTKRILGEIDSALLKVPSLDDDTV 720

Query: 721  LRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINSVGTDELHREIFVYGVEVEGVHLR 780
            LRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINSVGTDELHREIFVYGVEVEGVHLR
Sbjct: 721  LRSYVNLISGTLRTNYFQKNQDDIALVFKFDSRKINSVGTDELHREIFVYGVEVEGVHLR 780

Query: 781  CGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEII 840
            CGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEII
Sbjct: 781  CGKIARGGLRWSDRAADYRTEVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEII 840

Query: 841  KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANIL 900
            KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANIL
Sbjct: 841  KIGREAYKTYVRALLSITDNFEGQEIIHPDNTVCLDGNDPYFVVAADKGTATFSDTANIL 900

Query: 901  AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM 960
            AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM
Sbjct: 901  AQEAKFWLDDAFASGGSMGYDHKKMGITARGAWETVKRHFREMDIDIQSTPFTVAGVGDM 960

Query: 961  SGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVL 1020
            SGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVL
Sbjct: 961  SGDVFGNGMLLSRKIQLVAAFDHSDIFIDPDPNSETTFDERKRLFDSPSSSWQDFDRKVL 1020

Query: 1021 SKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAP 1080
            SKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAP
Sbjct: 1021 SKGGMIISRKEKAVQLTPEAVAVIGISKQIATPSEIISAILMASVDLLWFGGIGTYIRAP 1080

Query: 1081 RENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGG 1140
            RENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGG
Sbjct: 1081 RENNADIGDKGNNILRVTADKVRAKVIGEGANLGLTQQARVVYSLNGGRINSDAIDNSGG 1140

Query: 1141 VNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAISLESRK 1200
            VNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAISLESRK
Sbjct: 1141 VNCSDLEVNIKIALASAMRDGRLTLENRNKLLSSMTSEVVELVLRNNYLQSLAISLESRK 1200

Query: 1201 GMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKL 1260
            GMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKL
Sbjct: 1201 GMAMMWNFAQLMKFLGKEGALDRELEHLPSVVSFEERIREEVSLSRPEIAILLAYAKLKL 1260

Query: 1261 SEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSC 1320
            SEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSC
Sbjct: 1261 SEQLLDSTLIDDPFFFSILLSYFPRQLSELYSEDIMNHQLRRAIVATVLANEIINKGGSC 1320

Query: 1321 FVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLIFI 1380
            FVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLIFI
Sbjct: 1321 FVVSLAKETGSSTEDVIRSAVIAYAGYELESLWQEVDKLDNQISGELQNKIYEEIRLIFI 1380

Query: 1381 NLTRLLIKNGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPP 1440
            NLTRLLIKNGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPP
Sbjct: 1381 NLTRLLIKNGKFIGDIGNAVKRLVTAFHKLNSLLQEKIPVEWLERFNNWVTNLTNKGFPP 1440

Query: 1441 DLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNVVVDDH 1500
            DLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNVVVDDH
Sbjct: 1441 DLADRIVRMQFLMVVPDLIDISETCDTSLLVVLDMWSAISVGLGVDRLLSVAHNVVVDDH 1500

Query: 1501 YENLALSAGLDWMYSARREMIVKAITTGSSVATIMQNEKWKEVKDQVFDILSVEKEVTVA 1560
            YENLALSAGLDWMYSARREMIVKAITTGSSVATIMQNEKWKEVKDQVFDILSVEKEVTVA
Sbjct: 1501 YENLALSAGLDWMYSARREMIVKAITTGSSVATIMQNEKWKEVKDQVFDILSVEKEVTVA 1560

Query: 1561 HITVATHLLSGFLLKI 1576
            HITVATHLLSGFLLKI
Sbjct: 1561 HITVATHLLSGFLLKI 1576


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 616 YIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYL-RQASVTWSQNFIARVLSKNPTIS 674
           Y+++  V++    H  ML  +  +EI+ + +   +L +Q S   S N+ +  LSK   I+
Sbjct: 289 YMYNNNVESGEERHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININ 348

Query: 675 QLLFS 679
           Q+  +
Sbjct: 349 QIYLT 353


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 94  VDNIPFLYQSIIG-------EIVARCRN---LTMAVHPVFTKDKNCDWQLYSPESC---- 139
           +DNIPF   +++         ++AR +N   +T   HP     +  + + YS  S     
Sbjct: 205 IDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQ-ADIRYSNIRKYSGRSIFDVS 263

Query: 140 --GIAQKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFC 197
             G   K +++I+   L +  E  I      I +  +L L S+D ++ LAS   +++ F 
Sbjct: 264 VQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFT 323

Query: 198 HLTGI 202
            L G+
Sbjct: 324 -LVGV 327


>gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 473

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 801 EVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGR 844
           EV  +++     N  I P G   G    ++P + R+D I+ I R
Sbjct: 54  EVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR 97


>gi|254780548|ref|YP_003064961.1| translocation protein TolB [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 447

 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 18/85 (21%)

Query: 519 ISCAEGKEKLRVCFENKEDGKVQIKIFHARGPFSLSKRV--------------PLLENLG 564
           IS +   +  ++ FE+  +GK Q+ +  + G  S  KR+              P  + + 
Sbjct: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG--SDQKRISQDKEASYFDPVWSPQGDLIA 362

Query: 565 FTVISEDTFEIKMLADD--EEHLVV 587
           FT  S + F I ++  D  +E L+V
Sbjct: 363 FTKFSGEKFAIGVMKKDGSQERLLV 387


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 998,599
Number of Sequences: 1233
Number of extensions: 43051
Number of successful extensions: 119
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 11
length of query: 1576
length of database: 328,796
effective HSP length: 86
effective length of query: 1490
effective length of database: 222,758
effective search space: 331909420
effective search space used: 331909420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)