HHsearch alignment for GI: 254780663 and conserved domain: cd00884
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=0 Score=377.14 Aligned_cols=184 Identities=45% Similarity=0.821 Sum_probs=166.7
Q ss_pred HHHHHHHCCC--CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999970687--98899986238997599996267899888851788662488862422345777775302578887767
Q gi|254780663|r 11 RHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFA 88 (207)
Q Consensus 11 ~N~~f~~~~~--~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~~~~~~sle~a 88 (207)
T Consensus 1 G~~~f~~~~~~~~~~~f~~La~gQ~P~a~vi~CsDSRV~pe~if~~~~GdlFVvRnagNiVpp~~~~~~~~~~~aslEyA 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred CHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 97789877631478999998378999679998653589999982899976799841223358776776630378999999
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 220576689998158538988753000013463310146898888999986401----6324687999999999999973
Q gi|254780663|r 89 VQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVAN----NPTEKQTILEQLSIRNSLKNIR 164 (207)
Q Consensus 89 v~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~nV~~~v~~L~ 164 (207)
T Consensus 81 v~~L~v~~IvV~GHs~CGav~Aa~~~~~~-~~~~~~i~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPEDL-LDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99639867999458776699988613456-77764589999988989999986336899899999999999999999997
Q ss_pred CCHHHHHHHHCCCCEEEEEEEECCCCEEEEE
Q ss_conf 0978899997799679999998898769998
Q gi|254780663|r 165 NFPFVNKLEKEHMLQIHGAWFDISSGKLWIL 195 (207)
Q Consensus 165 ~~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l 195 (207)
T Consensus 160 ~~p~i~~~~~~g~l~I~G~~Ydi~tG~v~~f 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred CCHHHHHHHHCCCCEEEEEEEECCCEEEEEC
T ss_conf 2999999998799589999998797169849