HHsearch alignment for GI: 254780663 and conserved domain: cd03378
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=0 Score=321.54 Aligned_cols=145 Identities=37% Similarity=0.622 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHCCC-----CHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 69999999999970687-----9889998623899759999626789988885178866248886242234577777530
Q gi|254780663|r 4 FPNTLLERHREFIQDQY-----DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQH 78 (207)
Q Consensus 4 ~~~~Ll~~N~~f~~~~~-----~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fv~RnaGn~v~~~~~~~~~ 78 (207)
T Consensus 4 al~~L~~GN~RF~~g~~~~~~~~~~~~~~la~GQ~P~a~vi~CsDSRv~pe~if~~~~Gdlfv~Rn~gn~v~-------- 75 (154)
T cd03378 4 ALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVD-------- 75 (154)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEECCCCCCC--------
T ss_conf 999999999999779977888899999987379998279998607899999985899855799842223489--------
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 25788877672205766899981585389887530000134633101468988889999864016324687999999999
Q gi|254780663|r 79 HATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRN 158 (207)
Q Consensus 79 ~~~~~sle~av~~l~v~~iiV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nV~~ 158 (207)
T Consensus 76 ~~~~~sleyav~~L~v~~ivV~GH~~CGav~Aa---------------------------------------~~~~nV~~ 116 (154)
T cd03378 76 DDVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA---------------------------------------AVRANVKA 116 (154)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---------------------------------------HHHHHHHH
T ss_conf 888888999999719988999789874489999---------------------------------------99999999
Q ss_pred HHHHHHC-CHHHHHHHHCCCCEEEEEEEECCCCEEEEE
Q ss_conf 9999730-978899997799679999998898769998
Q gi|254780663|r 159 SLKNIRN-FPFVNKLEKEHMLQIHGAWFDISSGKLWIL 195 (207)
Q Consensus 159 ~v~~L~~-~p~i~~~v~~g~l~I~G~~yDi~tG~v~~l 195 (207)
T Consensus 117 ~~~~L~~~s~~l~~~v~~G~l~i~Ga~Ydi~tG~V~~l 154 (154)
T cd03378 117 TVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHCHHHHHHHHCCCEEEEEEEEECCCEEEEEC
T ss_conf 99999750999999998898099999998387499879