RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780663|ref|YP_003065076.1| carbonate dehydratase
[Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>gnl|CDD|48223 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism in
which the nucleophilic attack of a zinc-bound hydroxide
ion on carbon dioxide is followed by the regeneration of
an active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
CAs are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionarily distinct families of CAs (the alpha-,
beta-, and gamma-CAs) which show no significant sequence
identity or structural similarity. Within the beta-CA
family there are four evolutionarily distinct clades (A
through D). The beta-CAs are multimeric enzymes (forming
dimers,tetramers,hexamers and octamers) which are
present in higher plants, algae, fungi, archaea and
prokaryotes..
Length = 190
Score = 237 bits (607), Expect = 1e-63
Identities = 83/191 (43%), Positives = 120/191 (62%), Gaps = 7/191 (3%)
Query: 11 RHREFIQDQY--DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANI 68
R F ++ + +++LF++LA Q PK + I+C DSRV P I +PGELFVVRNV N+
Sbjct: 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNL 60
Query: 69 VPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKW 128
VPPYEPDG H TSAAIE+AV L VEHIVV GH CGGI+A+L + FIGKW
Sbjct: 61 VPPYEPDGGFHGTSAAIEYAVAVLKVEHIVVCGHSDCGGIRALLSPEDLL-DKLPFIGKW 119
Query: 129 MDIVRPIAQKIVA----NNPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAW 184
+ I P + ++A + ++ LE+ ++ SL+N+ +PFV + + L +HG +
Sbjct: 120 LRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLLTYPFVRERLEAGTLSLHGWY 179
Query: 185 FDISSGKLWIL 195
+DI +G+L+
Sbjct: 180 YDIETGELYAY 190
>gnl|CDD|144177 pfam00484, Pro_CA, Carbonic anhydrase. This family includes
carbonic anhydrases as well as a family of
non-functional homologues related to YbcF.
Length = 146
Score = 191 bits (488), Expect = 9e-50
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 11/157 (7%)
Query: 36 IMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVE 95
++I C DSRV PE IF PG+LFV+RN NIVPP A++E+AV+ L V+
Sbjct: 1 ALVIGCSDSRVPPELIFGLGPGDLFVIRNAGNIVPPP-----DGDVLASLEYAVEVLGVK 55
Query: 96 HIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLS 155
IVV+GH CG ++A LD I +W+ +RP +++ + ++ L + +
Sbjct: 56 EIVVLGHTDCGAVKAALDDV-----ELGLIDEWLRHIRPAVEEVKSEFE-DELDALVEEN 109
Query: 156 IRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKL 192
+R ++N+R P V + + L++HGA +DI +GKL
Sbjct: 110 VREQVENLRTSPLVPEAVAKGELKVHGAVYDIETGKL 146
>gnl|CDD|30636 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and
metabolism].
Length = 207
Score = 172 bits (436), Expect = 9e-44
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 3 SFPNTLLERHREFIQDQY--DKKLFQELANQ-QKPKIMIISCCDSRVAPETIFNAKPGEL 59
S LL ++ F + ++ LF++LA++ Q PK +II+C DSRV PE I PG+L
Sbjct: 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDL 61
Query: 60 FVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSST 119
FV+RN NIV + + ++E+AV L V+ I+V GH CG ++A LD
Sbjct: 62 FVIRNAGNIVTHPD-----GSVLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGL 116
Query: 120 SPGDFIGKWMDIVRPIAQKIVANNPTEKQT-----ILEQLSIRNSLKNIRNFPFV-NKLE 173
I W+ + +A + L + ++R + N+R P V + L
Sbjct: 117 K---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVREQVANLRTHPIVQSALV 173
Query: 174 KEHMLQIHGAWFDISSGKLWILDPTSNEFT 203
+ + +HG +DI +G+L+++D + +F
Sbjct: 174 RGQKVAVHGWVYDIETGRLYVVDVATIDFE 203
>gnl|CDD|73199 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism in which the
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide is followed by the regeneration of an
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
CAs are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionarily distinct families of CAs (the alpha-,
beta-, and gamma-CAs) which show no significant sequence
identity or structural similarity. Within the beta-CA
family there are four evolutionarily distinct clades (A
through D). The beta-CAs are multimeric enzymes (forming
dimers,tetramers,hexamers and octamers) which are
present in higher plants, algae, fungi, archaea and
prokaryotes..
Length = 119
Score = 147 bits (372), Expect = 3e-36
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 45/164 (27%)
Query: 32 QKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQG 91
QKPK +II C DSRV PE IF PG+LFVVRN N+VPPY A++E+AV+
Sbjct: 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPY-----DLDVLASLEYAVEV 55
Query: 92 LNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTIL 151
L V+HI+V GH CG ++A L
Sbjct: 56 LGVKHIIVCGHTDCGAVKA----------------------------------------L 75
Query: 152 EQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWIL 195
+ ++R ++N+R+ P + + L++HG +DI +GKL +L
Sbjct: 76 VEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGKLEVL 119
>gnl|CDD|48222 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism in
which the nucleophilic attack of a zinc-bound hydroxide
ion on carbon dioxide is followed by the regeneration of
an active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
CAs are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionarily distinct families of CAs (the alpha-,
beta-, and gamma-CAs) which show no significant sequence
identity or structural similarity. Within the beta-CA
family there are four evolutionarily distinct clades (A
through D). The beta-CAs are multimeric enzymes (forming
dimers,tetramers,hexamers and octamers) which are
present in higher plants, algae, fungi, archaea and
prokaryotes..
Length = 182
Score = 134 bits (338), Expect = 2e-32
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 21 DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHA 80
D F LA Q P+ + I C DSRV TI PGE+FV RN+AN+V P
Sbjct: 12 DPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSP-----TDLN 66
Query: 81 TSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIV 140
+ +++AV L V+HI+V GH CGG++A L + W+ +R + +
Sbjct: 67 CLSVLQYAVDVLKVKHIIVCGHYGCGGVKAALTGKRLG-----LLDNWLRPIRDVYRLHA 121
Query: 141 AN-----NPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAWFDISSGKL 192
A + E+ L +L++ +KN+ P V + ++ L++HG +D+ G L
Sbjct: 122 AELDALEDEEERVDRLVELNVVEQVKNLCKTPIVQDAWKRGQELEVHGWVYDLGDGLL 179
>gnl|CDD|36791 KOG1578, KOG1578, KOG1578, Predicted carbonic anhydrase involved in
protection against oxidative damage [Inorganic ion
transport and metabolism].
Length = 276
Score = 114 bits (286), Expect = 2e-26
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 24 LFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSA 83
LF LA Q P+ + + C DSRV I PGE F +RN+AN+VPP + A
Sbjct: 84 LFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSK-PTNVGA 142
Query: 84 AIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVA-- 141
A+E+AV L VE+I+V+GH CGGI+ ++ S + FI W+ I +
Sbjct: 143 ALEYAVTTLKVENIIVIGHSLCGGIKGLM-SFSLEAPSRSFIENWVYIDPEAKLAVEDKL 201
Query: 142 -NNPTEKQTI-LEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSG--KLWILDP 197
+Q E + SL + ++PFV + + LQ+HG +++ S G + W LD
Sbjct: 202 SQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWELDE 261
Query: 198 TSNE 201
+ +
Sbjct: 262 KTVD 265
>gnl|CDD|73356 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism in
which the nucleophilic attack of a zinc-bound hydroxide
ion on carbon dioxide is followed by the regeneration of
an active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
CAs are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionarily distinct families of CAs (the alpha-,
beta-, and gamma-CAs) which show no significant sequence
identity or structural similarity. Within the beta-CA
family there are four evolutionarily distinct clades (A
through D). The beta-CAs are multimeric enzymes (forming
dimers,tetramers,hexamers and octamers) which are
present in higher plants, algae, fungi, archaea and
prokaryotes..
Length = 154
Score = 100 bits (250), Expect = 4e-22
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 51/190 (26%)
Query: 7 TLLERHREFIQDQ-----YDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFV 61
L E ++ F+ + D +ELA QKP +I+SC DSRV PE IF+ G+LFV
Sbjct: 7 RLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFV 66
Query: 62 VRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSP 121
VR NIV ++E+AV+ L V +VV+GH CG + A N
Sbjct: 67 VRVAGNIVDD--------DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAAAVRAN----- 113
Query: 122 GDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIH 181
V+ K+ + +P I+ + L L+I
Sbjct: 114 ----------VKATVAKLRSRSP-----IIAE------------------LVAAGKLKIV 140
Query: 182 GAWFDISSGK 191
GA++D+ +GK
Sbjct: 141 GAYYDLDTGK 150
>gnl|CDD|48225 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism in
which the nucleophilic attack of a zinc-bound hydroxide
ion on carbon dioxide is followed by the regeneration of
an active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
CAs are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionarily distinct families of CAs (the alpha-,
beta-, and gamma-CAs) which show no significant sequence
identity or structural similarity. Within the beta-CA
family there are four evolutionarily distinct clades (A
through D). The beta-CAs are multimeric enzymes (forming
dimers,tetramers,hexamers and octamers) which are
present in higher plants, algae, fungi, archaea and
prokaryotes..
Length = 142
Score = 59.9 bits (145), Expect = 5e-10
Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 26/162 (16%)
Query: 33 KPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGL 92
K+ I++C D+R+ PE K G+ V+RN V ++ +V L
Sbjct: 2 ARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVT--------DDAIRSLVVSVYLL 53
Query: 93 NVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTI-- 150
I+V+ H CG T + + + M +
Sbjct: 54 GTREIIVIHHTDCG----------MLTFTDEELKEKMKERGIAEAYGGIDKEFWFLGFDD 103
Query: 151 LEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKL 192
LE+ S+R ++ IRN P + + +HG +D+ +GKL
Sbjct: 104 LEE-SVREDVERIRNHPLI-----PDDVPVHGYVYDVKTGKL 139
>gnl|CDD|143803 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 29.5 bits (67), Expect = 0.73
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 69 VPPYEPDGQHHATSAAIEFAVQGLNVEHIV 98
VP Y D Q AT A A GLNV I+
Sbjct: 140 VPAYFNDAQRQATKDAGRIA--GLNVLRII 167
>gnl|CDD|133259 cd01850, CDC_Septin, CDC/Septin. Septins are a conserved family of
GTP-binding proteins associated with diverse processes
in dividing and non-dividing cells. They were first
discovered in the budding yeast S. cerevisiae as a set
of genes (CDC3, CDC10, CDC11 and CDC12) required for
normal bud morphology. Septins are also present in
metazoan cells, where they are required for cytokinesis
in some systems, and implicated in a variety of other
processes involving organization of the cell cortex and
exocytosis. In humans, 12 septin genes generate dozens
of polypeptides, many of which comprise heterooligomeric
complexes. Since septin mutants are commonly defective
in cytokinesis and formation of the neck formation of
the neck filaments/septin rings, septins have been
considered to be the primary constituents of the neck
filaments. Septins belong to the GTPase superfamily for
their conserved GTPase motifs and enzymatic activities.
Length = 276
Score = 28.6 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 14 EFIQDQYDKKLFQELANQQKPKIMIISCCDSRV 46
++I DQ+D+ L +E ++ P+I D+RV
Sbjct: 88 DYIDDQFDQYLREESRIKRNPRI-----PDTRV 115
>gnl|CDD|34166 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 28.0 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 46 VAPETIFNAKPGELFVV-RNVANIVPPYEPD 75
+APE I F V R + N +PPYE
Sbjct: 110 LAPENILFDGGLTPFFVHRGLKNSLPPYEMT 140
>gnl|CDD|35325 KOG0102, KOG0102, KOG0102, Molecular chaperones
mortalin/PBP74/GRP75, HSP70 superfamily
[Posttranslational modification, protein turnover,
chaperones].
Length = 640
Score = 26.8 bits (59), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 62 VRNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIV 98
V+N VP Y D Q AT A + A GLNV ++
Sbjct: 160 VKNAVITVPAYFNDSQRQATKDAGQIA--GLNVLRVI 194
>gnl|CDD|39432 KOG4231, KOG4231, KOG4231, Intracellular membrane-bound
Ca2+-independent phospholipase A2 [Lipid transport and
metabolism].
Length = 763
Score = 26.2 bits (57), Expect = 6.2
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 108 IQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFP 167
V + + +S +G M +++ K PTE L I + L+ +
Sbjct: 260 QHVVEKACVALSSLARDVGVTMQLMKCDLMK-----PTETVLKLSSPDIISLLQVVVTLA 314
Query: 168 FVNKLEKEHML 178
FV+ + ML
Sbjct: 315 FVSDSVSQEML 325
>gnl|CDD|35958 KOG0739, KOG0739, KOG0739, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 439
Score = 26.1 bits (57), Expect = 6.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 22 KKLFQELANQQKPKIMII----SCCDSRVAPET 50
K LF E+A + KP I+ I S C SR E+
Sbjct: 215 KNLF-EMARENKPSIIFIDEIDSLCGSRSENES 246
>gnl|CDD|34624 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 26.0 bits (57), Expect = 7.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 14 EFIQDQYDKKLFQELANQQKPKIMIISCCDSRV 46
++I DQ+D+ L +E ++ PK D+RV
Sbjct: 107 DYIDDQFDQYLDEEQKIKRNPKF-----KDTRV 134
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,539,325
Number of extensions: 125231
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 22
Length of query: 207
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,340,536
Effective search space: 512183248
Effective search space used: 512183248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)