RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780663|ref|YP_003065076.1| carbonate dehydratase
[Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand
exchange, lyase; HET: CIT; 1.93A {Pisum sativum}
(A:44-221)
Length = 178
Score = 171 bits (433), Expect = 8e-44
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 33 KPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGL 92
P M+ +C DSRV P + + +PGE FVVRNVAN+VPPY+ ++ T AAIE+AV L
Sbjct: 1 SPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYD-QAKYAGTGAAIEYAVLHL 59
Query: 93 NVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPT----EKQ 148
V +IVV+GH CGGI+ +L T DFI +W+ I P K+ A + E
Sbjct: 60 KVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELC 119
Query: 149 TILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202
T E+ ++ SL N+ +PFV + L + G ++D G +
Sbjct: 120 THCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLS 173
>1i6p_A Carbonic anhydrase; metalloenzyme, zinc coordination, PH-
dependent activity, MAD phasing, lyase; 2.00A
{Escherichia coli} (A:27-220)
Length = 194
Score = 159 bits (404), Expect = 2e-40
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 7/178 (3%)
Query: 26 QELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAI 85
++LA QKP+ + I C DSRV E + +PGELFV RNVAN+V + + + +
Sbjct: 1 EKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLN-----CLSVV 55
Query: 86 EFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPT 145
++AV L VEHI++ GH CGG+QA +++ +++ DI + +
Sbjct: 56 QYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLIN-NWLLHIRDIWFKHSSLLGEMPQE 114
Query: 146 EKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202
+ L +L++ + N+ + + + ++ + IHG + I G L LD T+
Sbjct: 115 RRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 172
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbonic
dehydratase); Zn protein, structural proteomics in
europe, spine; 1.75A {Mycobacterium tuberculosis H37RV}
PDB: 2a5v_A (A:)
Length = 215
Score = 156 bits (396), Expect = 2e-39
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 15/201 (7%)
Query: 8 LLERHREFIQDQ-----YDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVV 62
L E + F+ + LA QKP +I C DSRVA E IF+ G++FVV
Sbjct: 21 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 80
Query: 63 RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPG 122
R +++ +IE+AV LNV IVV+GH CG + A L + N T PG
Sbjct: 81 RTAGHVIDSA--------VLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPG 132
Query: 123 DFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIH 181
++ ++ V P + + EQ + ++ + ++ L I
Sbjct: 133 GYVRDVVERVAPSVLLGRRDGL-SRVDEFEQRHVHETVAILMARSSAISERIAGGSLAIV 191
Query: 182 GAWFDISSGKLWILDPTSNEF 202
G + + G+ + D N
Sbjct: 192 GVTYQLDDGRAVLRDHIGNIG 212
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase,
metal-binding, nucleus, zinc; 2.04A {Saccharomyces
cerevisiae} (A:39-216)
Length = 178
Score = 153 bits (388), Expect = 1e-38
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 29 ANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFA 88
A Q P + I C DSR E PGE+F +NVANI + A +EFA
Sbjct: 2 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANICHSED-----LTLKATLEFA 55
Query: 89 VQGLNVEHIVVMGHGRCGGIQAVL--DSNNSSTSPGDFIGKWMDIVRPIAQKIVAN---- 142
+ L V +++ GH CGGI+ L + K++D + + + N
Sbjct: 56 IICLKVNKVIICGHTDCGGIKTCLTNQREALPKVNCSHLYKYLDDIDTMYHEESQNLIHL 115
Query: 143 -NPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSNE 201
EK L +++ I P V + LQ++G +++ G L + +
Sbjct: 116 KTQREKSHYLSHCNVKRQFNRIIENPTVQTAVQNGELQVYGLLYNVEDGLLQTVSTYTKV 175
Query: 202 F 202
Sbjct: 176 T 176
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric
site mutant, lyase, metal-binding, zinc; 2.00A
{Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A
3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A
3e24_A (A:29-229)
Length = 201
Score = 152 bits (385), Expect = 3e-38
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 28 LANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEF 87
LA+ Q P + I+C DSRV E + N +PGELFV RNVAN V + + +++
Sbjct: 1 LADHQTPHYLWIACSDSRVPAEKLTNLEPGELFVHRNVANQVIHTD-----FNCLSVVQY 55
Query: 88 AVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEK 147
AV L +EHI++ GH CGGI A + + + DI + +P ++
Sbjct: 56 AVDVLKIEHIIICGHTNCGGIHAAMADKDLGLINNWLL-HIRDIWFKHGHLLGKLSPEKR 114
Query: 148 QTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202
+L ++++ + N+ V + E+ L +HG +D++ G L +
Sbjct: 115 ADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDGFLVDQGVMATSR 170
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A
{Cryptococcus neoformans} PDB: 2w3n_A (A:64-243)
Length = 180
Score = 152 bits (384), Expect = 4e-38
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 34 PKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLN 93
P + I C DSRV TI KPG++FV RNVAN P ++ A + +A+ +
Sbjct: 2 PNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPE-----DDSSQALLNYAIMNVG 56
Query: 94 VEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQ 153
V H++V+GH CGG A D + + + PI + + L +
Sbjct: 57 VTHVMVVGHTGCGGCIAAFDQPLPTEEN-PGGTPLVRYLEPIIRLKHSLPEGSDVNDLIK 115
Query: 154 LSIRNSLKNIRNFPFV------NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202
+++ ++KN+ N P + + + + +HG +D+S+G + L+ T
Sbjct: 116 ENVKMAVKNVVNSPTIQGAWEQARKGEFREVFVHGWLYDLSTGNIVDLNVTQGPH 170
>1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium
cruentum} (A:67-320)
Length = 254
Score = 151 bits (381), Expect = 9e-38
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 34 PKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLN 93
P+ + I C DSRV + + GE+FV RN+AN + + + +++AVQ L
Sbjct: 1 PEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHSD-----ISFLSVLQYAVQYLK 55
Query: 94 VEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVAN-NPTEKQTILE 152
V+HI+V GH CGG +A L + +++ D+ R A+ + + E+ L
Sbjct: 56 VKHILVCGHYGCGGAKAALGDSRLGLID-NWLRHIRDVRRMNAKYLDKCKDGDEELNRLI 114
Query: 153 QLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202
+L++ + N+ V + + L + G + + GKL L N
Sbjct: 115 ELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVNSS 165
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A
{Methanothermobacterthermautotrophicus} (A:19-170)
Length = 152
Score = 130 bits (327), Expect = 2e-31
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 26/172 (15%)
Query: 29 ANQQKPKIMIISCCDSRVAP--ETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIE 86
+ PK+ II+C DSR+ E G+ V++N NIV +
Sbjct: 2 DLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGV--------IRSAA 53
Query: 87 FAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTE 146
A+ L I+++GH CG + D I M + + I +
Sbjct: 54 VAIYALGDNEIIIVGHTDCGMARLDE----------DLIVSRMRELGVEEEVIENFSIDV 103
Query: 147 KQTI-LEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDP 197
+ E+ ++ +K +++ P + + +HG DI++G+L L
Sbjct: 104 LNPVGDEEENVIEGVKRLKSSPLI-----PESIGVHGLIIDINTGRLKPLYL 150
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer,
alpha/beta-fold, structural proteomics in europe, spine,
structural genomics; 2.00A {Mycobacterium tuberculosis
H37RV} (A:33-172)
Length = 140
Score = 129 bits (325), Expect = 3e-31
Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 32 QKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQG 91
I I++C D+R+ + K GE V+RN +V ++ + +
Sbjct: 3 PSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDV--------IRSLAISQRL 54
Query: 92 LNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTIL 151
L I+++ H CG + D + I +
Sbjct: 55 LGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWS---------------PESYPD 99
Query: 152 EQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDP 197
+R SL+ I PFV + G FD+++GKL + P
Sbjct: 100 AVEDVRQSLRRIEVNPFV-----TKHTSLRGFVFDVATGKLNEVTP 140
>1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium
cruentum} (A:1-66,A:321-496)
Length = 242
Score = 81.7 bits (201), Expect = 6e-17
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 21 DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHA 80
D + F LAN Q P+I+ I C DSRV I N GE+FV RN+AN H
Sbjct: 54 DPEFFNRLANGQSPEILWIGCADSRVPANQIINLPAGEVFVHRNIAN-------QCIHSD 106
Query: 81 TS--AAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQK 138
S + +++AVQ L V+ +VV GH CGG A S I W+ +R + +
Sbjct: 107 MSFLSVLQYAVQYLKVKRVVVCGHYACGGCAA-----ALGDSRLGLIDNWLRHIRDVRRH 161
Query: 139 IVAN-----NPTEKQTILEQLSIRNSLKNIRNFPFVNKL-EKEHMLQIHGAWFDISSGKL 192
A +P + L ++++ + N+ V + L++ G + + GKL
Sbjct: 162 NQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKL 221
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 30.5 bits (68), Expect = 0.17
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 20/96 (20%)
Query: 96 HIVVMGHGR-----CGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTI 150
IV+ G D D + + + +I P Q +
Sbjct: 237 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL-GDQSMRIKHLLPRNTQIV 295
Query: 151 L---------EQLSIRNSLKNIRNFPFVNKLEKEHM 177
L E+ + N +L+ E +
Sbjct: 296 LFSATFSERVEKYA-ERFAPN----ANEIRLKTEEL 326
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial;
central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A
{Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
(A:105-166,A:213-435)
Length = 285
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 95 EHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQL 154
H++V+ G VLD + + +P + + I++++ + + L
Sbjct: 86 RHLLVLRKGHFYVFD-VLDQDGNIVNPLEIQAHL--------KYILSDSSPVPEFPVAYL 136
Query: 155 SI--RNSLKNIRNFPFVNKLEKEHMLQIHGAWFDIS 188
+ R+ +R + +E + ++ A F +
Sbjct: 137 TSENRDVWAELRQK-LIFDGNEETLKKVDSAVFCLC 171
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, domain, PSI,
MCSG, structural genomics, midwest center for
structural genomics; 1.60A {Porphyromonas gingivalis}
(A:)
Length = 122
Score = 26.5 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 28 LANQQKPKIMIISCCDSRVAPETIFNAK 55
LAN+ K K+ I+ D +VA + I +
Sbjct: 15 LANKSKXKVSIVQQIDRKVALDDIAVSH 42
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease,
cleavage on PAIR of basic residues, glycoprotein,
hydrolase protease, secreted; HET: IHN; 2.50A {Candida
albicans} (A:193-311)
Length = 119
Score = 26.2 bits (57), Expect = 3.3
Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 92 LNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTIL 151
+ + + V G +LDS + IVR I I A +
Sbjct: 5 VGLRSVNVRGRNVDANTNVLLDSGTT------ISYFTRSIVRNILYAIGAQMKFDSAGNK 58
Query: 152 EQLSIRNSLKNIRNFPFVN-------------KLEKEHMLQIHGAWFDISSGKLWIL 195
++ + I +F F N + I + IL
Sbjct: 59 VYVADCKTSGTI-DFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRESEDNIL 114
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein;
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus
horikoshii} (A:1-23,A:182-322)
Length = 164
Score = 26.1 bits (57), Expect = 3.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 32 QKPKIMIISCCDSRVAPETIFNAKPGE 58
+KPK+ II + + K G+
Sbjct: 23 EKPKVGIIITGSELIEEPSEEGFKEGK 49
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell
WALL, glycosidase, hydrolase, peptidoglycan-anchor,
secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
(A:332-438)
Length = 107
Score = 25.8 bits (56), Expect = 4.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 68 IVPPYEPDGQHHATSAAIEFAVQGLNVE---HIVVMGHGRCGGIQAVLDSNNSSTS 120
++P Y DG H + A +E V LN+ V G G GGI +NS+T+
Sbjct: 47 VMPSYFNDGGHKGSGAQVE--VGSLNIRLGTGAAVWGTGYFGGI------DNSATT 94
>3fg9_A Protein of universal stress protein USPA family; APC60691,
nucleotide- binding, lactobacillus plantarum WCFS1,
structural genomics PSI-2; 1.47A {Lactobacillus
plantarum} (A:14-156)
Length = 143
Score = 25.5 bits (55), Expect = 5.6
Identities = 2/53 (3%), Positives = 8/53 (15%), Gaps = 1/53 (1%)
Query: 63 RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSN 115
+E + + +V + +
Sbjct: 76 EQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTE-FPHSKIAGAI 127
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain,
three helix bundle, ubiquitin associated domain,
structural genomics; NMR {Arabidopsis thaliana} (A:)
Length = 84
Score = 24.8 bits (54), Expect = 9.6
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 74 PDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSS 118
PDG + + V +V MG + +A ++++N+
Sbjct: 13 PDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAG 57
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,608,399
Number of extensions: 67879
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 33
Length of query: 207
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 123
Effective length of database: 2,116,429
Effective search space: 260320767
Effective search space used: 260320767
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)