RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str. psy62] (207 letters) >1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} (A:44-221) Length = 178 Score = 171 bits (433), Expect = 8e-44 Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 5/174 (2%) Query: 33 KPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGL 92 P M+ +C DSRV P + + +PGE FVVRNVAN+VPPY+ ++ T AAIE+AV L Sbjct: 1 SPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYD-QAKYAGTGAAIEYAVLHL 59 Query: 93 NVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPT----EKQ 148 V +IVV+GH CGGI+ +L T DFI +W+ I P K+ A + E Sbjct: 60 KVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELC 119 Query: 149 TILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202 T E+ ++ SL N+ +PFV + L + G ++D G + Sbjct: 120 THCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLS 173 >1i6p_A Carbonic anhydrase; metalloenzyme, zinc coordination, PH- dependent activity, MAD phasing, lyase; 2.00A {Escherichia coli} (A:27-220) Length = 194 Score = 159 bits (404), Expect = 2e-40 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 7/178 (3%) Query: 26 QELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAI 85 ++LA QKP+ + I C DSRV E + +PGELFV RNVAN+V + + + + Sbjct: 1 EKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLN-----CLSVV 55 Query: 86 EFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPT 145 ++AV L VEHI++ GH CGG+QA +++ +++ DI + + Sbjct: 56 QYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLIN-NWLLHIRDIWFKHSSLLGEMPQE 114 Query: 146 EKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202 + L +L++ + N+ + + + ++ + IHG + I G L LD T+ Sbjct: 115 RRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 172 >1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbonic dehydratase); Zn protein, structural proteomics in europe, spine; 1.75A {Mycobacterium tuberculosis H37RV} PDB: 2a5v_A (A:) Length = 215 Score = 156 bits (396), Expect = 2e-39 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 15/201 (7%) Query: 8 LLERHREFIQDQ-----YDKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVV 62 L E + F+ + LA QKP +I C DSRVA E IF+ G++FVV Sbjct: 21 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 80 Query: 63 RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPG 122 R +++ +IE+AV LNV IVV+GH CG + A L + N T PG Sbjct: 81 RTAGHVIDSA--------VLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPG 132 Query: 123 DFIGKWMDIVRPIAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIH 181 ++ ++ V P + + EQ + ++ + ++ L I Sbjct: 133 GYVRDVVERVAPSVLLGRRDGL-SRVDEFEQRHVHETVAILMARSSAISERIAGGSLAIV 191 Query: 182 GAWFDISSGKLWILDPTSNEF 202 G + + G+ + D N Sbjct: 192 GVTYQLDDGRAVLRDHIGNIG 212 >3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} (A:39-216) Length = 178 Score = 153 bits (388), Expect = 1e-38 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 13/181 (7%) Query: 29 ANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFA 88 A Q P + I C DSR E PGE+F +NVANI + A +EFA Sbjct: 2 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANICHSED-----LTLKATLEFA 55 Query: 89 VQGLNVEHIVVMGHGRCGGIQAVL--DSNNSSTSPGDFIGKWMDIVRPIAQKIVAN---- 142 + L V +++ GH CGGI+ L + K++D + + + N Sbjct: 56 IICLKVNKVIICGHTDCGGIKTCLTNQREALPKVNCSHLYKYLDDIDTMYHEESQNLIHL 115 Query: 143 -NPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDPTSNE 201 EK L +++ I P V + LQ++G +++ G L + + Sbjct: 116 KTQREKSHYLSHCNVKRQFNRIIENPTVQTAVQNGELQVYGLLYNVEDGLLQTVSTYTKV 175 Query: 202 F 202 Sbjct: 176 T 176 >3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, metal-binding, zinc; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A (A:29-229) Length = 201 Score = 152 bits (385), Expect = 3e-38 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 7/176 (3%) Query: 28 LANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEF 87 LA+ Q P + I+C DSRV E + N +PGELFV RNVAN V + + +++ Sbjct: 1 LADHQTPHYLWIACSDSRVPAEKLTNLEPGELFVHRNVANQVIHTD-----FNCLSVVQY 55 Query: 88 AVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEK 147 AV L +EHI++ GH CGGI A + + + DI + +P ++ Sbjct: 56 AVDVLKIEHIIICGHTNCGGIHAAMADKDLGLINNWLL-HIRDIWFKHGHLLGKLSPEKR 114 Query: 148 QTILEQLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202 +L ++++ + N+ V + E+ L +HG +D++ G L + Sbjct: 115 ADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDGFLVDQGVMATSR 170 >2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A (A:64-243) Length = 180 Score = 152 bits (384), Expect = 4e-38 Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 12/175 (6%) Query: 34 PKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLN 93 P + I C DSRV TI KPG++FV RNVAN P ++ A + +A+ + Sbjct: 2 PNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPE-----DDSSQALLNYAIMNVG 56 Query: 94 VEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQ 153 V H++V+GH CGG A D + + + PI + + L + Sbjct: 57 VTHVMVVGHTGCGGCIAAFDQPLPTEEN-PGGTPLVRYLEPIIRLKHSLPEGSDVNDLIK 115 Query: 154 LSIRNSLKNIRNFPFV------NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202 +++ ++KN+ N P + + + + +HG +D+S+G + L+ T Sbjct: 116 ENVKMAVKNVVNSPTIQGAWEQARKGEFREVFVHGWLYDLSTGNIVDLNVTQGPH 170 >1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium cruentum} (A:67-320) Length = 254 Score = 151 bits (381), Expect = 9e-38 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 8/171 (4%) Query: 34 PKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQGLN 93 P+ + I C DSRV + + GE+FV RN+AN + + + +++AVQ L Sbjct: 1 PEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHSD-----ISFLSVLQYAVQYLK 55 Query: 94 VEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVAN-NPTEKQTILE 152 V+HI+V GH CGG +A L + +++ D+ R A+ + + E+ L Sbjct: 56 VKHILVCGHYGCGGAKAALGDSRLGLID-NWLRHIRDVRRMNAKYLDKCKDGDEELNRLI 114 Query: 153 QLSIRNSLKNIRNFPFV-NKLEKEHMLQIHGAWFDISSGKLWILDPTSNEF 202 +L++ + N+ V + + L + G + + GKL L N Sbjct: 115 ELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVNSS 165 >1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} (A:19-170) Length = 152 Score = 130 bits (327), Expect = 2e-31 Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 26/172 (15%) Query: 29 ANQQKPKIMIISCCDSRVAP--ETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIE 86 + PK+ II+C DSR+ E G+ V++N NIV + Sbjct: 2 DLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGV--------IRSAA 53 Query: 87 FAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTE 146 A+ L I+++GH CG + D I M + + I + Sbjct: 54 VAIYALGDNEIIIVGHTDCGMARLDE----------DLIVSRMRELGVEEEVIENFSIDV 103 Query: 147 KQTI-LEQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDP 197 + E+ ++ +K +++ P + + +HG DI++G+L L Sbjct: 104 LNPVGDEEENVIEGVKRLKSSPLI-----PESIGVHGLIIDINTGRLKPLYL 150 >1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in europe, spine, structural genomics; 2.00A {Mycobacterium tuberculosis H37RV} (A:33-172) Length = 140 Score = 129 bits (325), Expect = 3e-31 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 28/166 (16%) Query: 32 QKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHATSAAIEFAVQG 91 I I++C D+R+ + K GE V+RN +V ++ + + Sbjct: 3 PSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDV--------IRSLAISQRL 54 Query: 92 LNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTIL 151 L I+++ H CG + D + I + Sbjct: 55 LGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWS---------------PESYPD 99 Query: 152 EQLSIRNSLKNIRNFPFVNKLEKEHMLQIHGAWFDISSGKLWILDP 197 +R SL+ I PFV + G FD+++GKL + P Sbjct: 100 AVEDVRQSLRRIEVNPFV-----TKHTSLRGFVFDVATGKLNEVTP 140 >1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium cruentum} (A:1-66,A:321-496) Length = 242 Score = 81.7 bits (201), Expect = 6e-17 Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 20/180 (11%) Query: 21 DKKLFQELANQQKPKIMIISCCDSRVAPETIFNAKPGELFVVRNVANIVPPYEPDGQHHA 80 D + F LAN Q P+I+ I C DSRV I N GE+FV RN+AN H Sbjct: 54 DPEFFNRLANGQSPEILWIGCADSRVPANQIINLPAGEVFVHRNIAN-------QCIHSD 106 Query: 81 TS--AAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQK 138 S + +++AVQ L V+ +VV GH CGG A S I W+ +R + + Sbjct: 107 MSFLSVLQYAVQYLKVKRVVVCGHYACGGCAA-----ALGDSRLGLIDNWLRHIRDVRRH 161 Query: 139 IVAN-----NPTEKQTILEQLSIRNSLKNIRNFPFVNKL-EKEHMLQIHGAWFDISSGKL 192 A +P + L ++++ + N+ V + L++ G + + GKL Sbjct: 162 NQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKL 221 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 30.5 bits (68), Expect = 0.17 Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 20/96 (20%) Query: 96 HIVVMGHGR-----CGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTI 150 IV+ G D D + + + +I P Q + Sbjct: 237 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL-GDQSMRIKHLLPRNTQIV 295 Query: 151 L---------EQLSIRNSLKNIRNFPFVNKLEKEHM 177 L E+ + N +L+ E + Sbjct: 296 LFSATFSERVEKYA-ERFAPN----ANEIRLKTEEL 326 >2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A* (A:105-166,A:213-435) Length = 285 Score = 27.7 bits (61), Expect = 1.3 Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 12/96 (12%) Query: 95 EHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTILEQL 154 H++V+ G VLD + + +P + + I++++ + + L Sbjct: 86 RHLLVLRKGHFYVFD-VLDQDGNIVNPLEIQAHL--------KYILSDSSPVPEFPVAYL 136 Query: 155 SI--RNSLKNIRNFPFVNKLEKEHMLQIHGAWFDIS 188 + R+ +R + +E + ++ A F + Sbjct: 137 TSENRDVWAELRQK-LIFDGNEETLKKVDSAVFCLC 171 >3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.60A {Porphyromonas gingivalis} (A:) Length = 122 Score = 26.5 bits (59), Expect = 2.6 Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 28 LANQQKPKIMIISCCDSRVAPETIFNAK 55 LAN+ K K+ I+ D +VA + I + Sbjct: 15 LANKSKXKVSIVQQIDRKVALDDIAVSH 42 >2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, cleavage on PAIR of basic residues, glycoprotein, hydrolase protease, secreted; HET: IHN; 2.50A {Candida albicans} (A:193-311) Length = 119 Score = 26.2 bits (57), Expect = 3.3 Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 20/117 (17%) Query: 92 LNVEHIVVMGHGRCGGIQAVLDSNNSSTSPGDFIGKWMDIVRPIAQKIVANNPTEKQTIL 151 + + + V G +LDS + IVR I I A + Sbjct: 5 VGLRSVNVRGRNVDANTNVLLDSGTT------ISYFTRSIVRNILYAIGAQMKFDSAGNK 58 Query: 152 EQLSIRNSLKNIRNFPFVN-------------KLEKEHMLQIHGAWFDISSGKLWIL 195 ++ + I +F F N + I + IL Sbjct: 59 VYVADCKTSGTI-DFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRESEDNIL 114 >1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} (A:1-23,A:182-322) Length = 164 Score = 26.1 bits (57), Expect = 3.4 Identities = 7/27 (25%), Positives = 12/27 (44%) Query: 32 QKPKIMIISCCDSRVAPETIFNAKPGE 58 +KPK+ II + + K G+ Sbjct: 23 EKPKVGIIITGSELIEEPSEEGFKEGK 49 >3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A (A:332-438) Length = 107 Score = 25.8 bits (56), Expect = 4.5 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%) Query: 68 IVPPYEPDGQHHATSAAIEFAVQGLNVE---HIVVMGHGRCGGIQAVLDSNNSSTS 120 ++P Y DG H + A +E V LN+ V G G GGI +NS+T+ Sbjct: 47 VMPSYFNDGGHKGSGAQVE--VGSLNIRLGTGAAVWGTGYFGGI------DNSATT 94 >3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} (A:14-156) Length = 143 Score = 25.5 bits (55), Expect = 5.6 Identities = 2/53 (3%), Positives = 8/53 (15%), Gaps = 1/53 (1%) Query: 63 RNVANIVPPYEPDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSN 115 +E + + +V + + Sbjct: 76 EQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTE-FPHSKIAGAI 127 >1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} (A:) Length = 84 Score = 24.8 bits (54), Expect = 9.6 Identities = 9/45 (20%), Positives = 19/45 (42%) Query: 74 PDGQHHATSAAIEFAVQGLNVEHIVVMGHGRCGGIQAVLDSNNSS 118 PDG + + V +V MG + +A ++++N+ Sbjct: 13 PDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAG 57 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0714 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,608,399 Number of extensions: 67879 Number of successful extensions: 294 Number of sequences better than 10.0: 1 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 33 Length of query: 207 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 123 Effective length of database: 2,116,429 Effective search space: 260320767 Effective search space used: 260320767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (23.8 bits)