HHsearch alignment for GI: 254780664 and conserved domain: cd01424

>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.63  E-value=4.2e-08  Score=79.44  Aligned_cols=106  Identities=36%  Similarity=0.500  Sum_probs=71.8

Q ss_pred             EEEEEEE--CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf             9899875--45686999999998799999942768999988995179465348816519855323715553553308898
Q gi|254780664|r   18 TALISVH--NKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNP   95 (536)
Q Consensus        18 rALiSV~--dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~   95 (536)
T Consensus         2 ~Vl~Sv~d~dK~e~l~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~k~~e------~-----~p~i-----------   59 (110)
T cd01424           2 TVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSE------G-----RPNI-----------   59 (110)
T ss_pred             EEEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCEEEECCCC------C-----CCCH-----------
T ss_conf             69999866547689999999998899999871699999864986403300567------9-----9768-----------


Q ss_pred             HHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHH
Q ss_conf             999999977998414999948888997317653112320023343469998740156313530899989889
Q gi|254780664|r   96 AHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFL  167 (536)
Q Consensus        96 ~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~  167 (536)
T Consensus        60 ---~d~i~~--~~i~lVI-Nt-~~~-----~~~----~~--d--g~~IRr~Av~--~~Ip~~Tsi~~A~a~v  109 (110)
T cd01424          60 ---VDLIKN--GEIQLVI-NT-PSG-----KRA----IR--D--GFSIRRAALE--YKVPYFTTLDTARAAV  109 (110)
T ss_pred             ---HHHHHC--CCEEEEE-EC-CCC-----CCC----CC--C--HHHHHHHHHH--CCCCEEECHHHHHHHH
T ss_conf             ---999977--9358999-77-889-----865----74--2--9999999997--6999996699999873