HHsearch alignment for GI: 254780664 and conserved domain: cd01424
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.63 E-value=4.2e-08 Score=79.44 Aligned_cols=106 Identities=36% Similarity=0.500 Sum_probs=71.8
Q ss_pred EEEEEEE--CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf 9899875--45686999999998799999942768999988995179465348816519855323715553553308898
Q gi|254780664|r 18 TALISVH--NKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNP 95 (536)
Q Consensus 18 rALiSV~--dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~ 95 (536)
T Consensus 2 ~Vl~Sv~d~dK~e~l~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~k~~e------~-----~p~i----------- 59 (110)
T cd01424 2 TVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSE------G-----RPNI----------- 59 (110)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCEEEECCCC------C-----CCCH-----------
T ss_conf 69999866547689999999998899999871699999864986403300567------9-----9768-----------
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHH
Q ss_conf 999999977998414999948888997317653112320023343469998740156313530899989889
Q gi|254780664|r 96 AHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFL 167 (536)
Q Consensus 96 ~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~ 167 (536)
T Consensus 60 ---~d~i~~--~~i~lVI-Nt-~~~-----~~~----~~--d--g~~IRr~Av~--~~Ip~~Tsi~~A~a~v 109 (110)
T cd01424 60 ---VDLIKN--GEIQLVI-NT-PSG-----KRA----IR--D--GFSIRRAALE--YKVPYFTTLDTARAAV 109 (110)
T ss_pred ---HHHHHC--CCEEEEE-EC-CCC-----CCC----CC--C--HHHHHHHHHH--CCCCEEECHHHHHHHH
T ss_conf ---999977--9358999-77-889-----865----74--2--9999999997--6999996699999873