Query         gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 536
No_of_seqs    170 out of 2250
Neff          4.9 
Searched_HMMs 39220
Date          Sun May 29 20:53:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780664.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00881 purH bifunctional pho 100.0       0       0 1663.0  48.4  511   13-536     1-514 (514)
  2 COG0138 PurH AICAR transformyl 100.0       0       0 1602.0  43.0  513   15-536     1-515 (515)
  3 KOG2555 consensus              100.0       0       0 1170.7  30.8  503   17-536     5-588 (588)
  4 PRK07106 5-aminoimidazole-4-ca 100.0       0       0  924.1  25.7  311  222-536     3-391 (391)
  5 pfam01808 AICARFT_IMPCHas AICA 100.0       0       0  906.1  26.4  312  147-462     1-315 (315)
  6 TIGR00355 purH bifunctional pu 100.0       0       0  896.0  25.1  520   17-536     1-569 (569)
  7 smart00798 AICARFT_IMPCHas AIC 100.0       0       0  894.7  25.0  310  147-462     1-311 (311)
  8 cd01421 IMPCH Inosine monophos 100.0       0       0  606.6  20.2  186   17-204     1-187 (187)
  9 pfam02142 MGS MGS-like domain.  99.5 2.5E-14 6.4E-19  124.7   6.7   92   28-142     1-92  (92)
 10 smart00851 MGS MGS-like domain  99.4 2.7E-13 6.8E-18  117.2   7.1   89   28-142     1-90  (90)
 11 cd00532 MGS-like MGS-like doma  99.0 1.5E-09 3.9E-14   89.9   9.2  106   19-163     2-109 (112)
 12 cd01424 MGS_CPS_II Methylglyox  98.6 4.2E-08 1.1E-12   79.4   4.9  106   18-167     2-109 (110)
 13 cd01423 MGS_CPS_I_III Methylgl  98.6 1.1E-07 2.9E-12   76.3   7.1  112   17-166     1-114 (116)
 14 PRK05294 carB carbamoyl phosph  98.4 5.9E-06 1.5E-10   63.9  11.7   66  226-300   526-604 (1063)
 15 PRK12815 carB carbamoyl phosph  98.4 7.2E-06 1.8E-10   63.2  11.5   13  287-299   592-604 (1068)
 16 TIGR01369 CPSaseII_lrg carbamo  97.6   9E-05 2.3E-09   55.2   4.2  130   12-170   957-1089(1089)
 17 pfam06230 DUF1009 Protein of u  97.3  0.0071 1.8E-07   41.5  10.7  113  403-527    83-211 (212)
 18 pfam06506 PrpR_N Propionate ca  92.8    0.66 1.7E-05   27.1   7.1  126   19-151     9-141 (169)
 19 TIGR00315 cdhB CO dehydrogenas  90.0    0.27 6.8E-06   30.0   2.7   44   26-69     41-90  (170)
 20 KOG0370 consensus               88.5    0.51 1.3E-05   27.9   3.3  222  107-339   716-1016(1435)
 21 pfam07085 DRTGG DRTGG domain.   85.6     1.6 4.1E-05   24.3   4.5   46  489-534    51-96  (105)
 22 cd01422 MGS Methylglyoxal synt  84.8     2.4 6.1E-05   23.1   5.1  106   18-163     2-111 (115)
 23 pfam01081 Aldolase KDPG and KH  84.0     1.7 4.4E-05   24.2   4.1   88  261-360    13-100 (196)
 24 cd00452 KDPG_aldolase KDPG and  83.8     1.6   4E-05   24.4   3.8   84  265-360    13-96  (190)
 25 PRK05718 keto-hydroxyglutarate  83.8     1.7 4.3E-05   24.2   3.9   89  259-359    18-106 (212)
 26 PRK08104 consensus              83.1     1.8 4.5E-05   24.1   3.8   93  255-359    14-106 (212)
 27 PRK07455 keto-hydroxyglutarate  82.5     1.9 4.9E-05   23.8   3.8   40  321-360    66-105 (210)
 28 PRK06015 keto-hydroxyglutarate  82.1       2 5.1E-05   23.7   3.8   89  260-360    19-107 (212)
 29 PRK09140 2-dehydro-3-deoxy-6-p  81.0     1.9 4.9E-05   23.8   3.4   82  266-360    20-103 (206)
 30 PRK06857 consensus              80.8     2.4 6.2E-05   23.1   3.9   88  260-359    16-103 (209)
 31 PRK07114 keto-hydroxyglutarate  80.8     1.9 4.8E-05   23.8   3.3   93  259-360    19-112 (223)
 32 PRK08904 consensus              80.6     2.5 6.4E-05   23.0   3.8   93  256-360    10-102 (207)
 33 PRK05234 mgsA methylglyoxal sy  80.4     1.6 4.1E-05   24.3   2.8  113   17-169     7-123 (146)
 34 COG0117 RibD Pyrimidine deamin  79.8     5.3 0.00013   20.6   8.0   81  416-505    12-101 (146)
 35 COG3494 Uncharacterized protei  79.8     5.3 0.00013   20.6  11.8  118  403-527   141-274 (279)
 36 PRK08782 consensus              78.2     3.2 8.2E-05   22.1   3.8   92  257-360    18-109 (219)
 37 PRK13210 putative L-xylulose 5  77.8       6 0.00015   20.2   7.8   20   98-117   100-119 (284)
 38 PRK06552 keto-hydroxyglutarate  76.1       4  0.0001   21.5   3.8   93  259-360    16-108 (209)
 39 PRK00489 hisG ATP phosphoribos  74.6     6.2 0.00016   20.1   4.5   83   47-150    17-102 (287)
 40 pfam04273 DUF442 Putative phos  73.9     7.5 0.00019   19.5   5.3   17  499-515    57-75  (110)
 41 TIGR00107 deoD purine nucleosi  72.3     5.4 0.00014   20.5   3.7   80  414-503    96-177 (234)
 42 pfam00591 Glycos_transf_3 Glyc  71.5     5.4 0.00014   20.5   3.5   19  343-361    78-96  (254)
 43 PRK00945 acetyl-CoA decarbonyl  71.0     4.2 0.00011   21.3   2.9   35   26-60     48-83  (171)
 44 COG2240 PdxK Pyridoxal/pyridox  70.0     6.4 0.00016   20.0   3.6   79  250-339   146-227 (281)
 45 COG0800 Eda 2-keto-3-deoxy-6-p  69.7     5.5 0.00014   20.5   3.3   86  263-360    20-105 (211)
 46 PRK05693 short chain dehydroge  69.1     9.5 0.00024   18.7   6.4   82   16-122     1-91  (274)
 47 cd01286 deoxycytidylate_deamin  68.0     9.9 0.00025   18.6   7.5   74  432-512    23-122 (131)
 48 PRK06153 hypothetical protein;  66.3     2.9 7.5E-05   22.4   1.3   19  320-338   248-266 (393)
 49 COG0813 DeoD Purine-nucleoside  66.0      11 0.00028   18.3   4.3  154  331-504    24-180 (236)
 50 COG0276 HemH Protoheme ferro-l  65.5      11 0.00028   18.3   4.2   19  351-369   105-123 (320)
 51 PRK00194 hypothetical protein;  65.2      10 0.00026   18.5   3.9   32   16-47      1-35  (90)
 52 PRK06444 prephenate dehydrogen  64.0     9.7 0.00025   18.7   3.6   54   31-84     15-79  (197)
 53 cd01987 USP_OKCHK USP domain i  63.8      12  0.0003   18.1   4.0   42  491-533    54-95  (124)
 54 pfam01976 DUF116 Protein of un  63.7     9.4 0.00024   18.8   3.5   40   78-119   103-142 (158)
 55 PRK08228 L(+)-tartrate dehydra  63.3      12 0.00031   18.0   4.2  121  221-370    12-145 (201)
 56 COG1936 Predicted nucleotide k  62.6     9.6 0.00025   18.7   3.4  106   20-144     4-124 (180)
 57 PRK05773 3,4-dihydroxy-2-butan  62.3      13 0.00032   17.9   4.6   38  491-528   165-208 (218)
 58 PRK08577 hypothetical protein;  61.7       7 0.00018   19.7   2.5   64   18-83     58-126 (135)
 59 PRK07102 short chain dehydroge  61.6      13 0.00033   17.8   4.2   40   16-56      1-41  (243)
 60 PRK06842 fumarate hydratase; P  59.9      14 0.00035   17.6   4.4   41  326-369   103-144 (185)
 61 PRK02261 methylaspartate mutas  59.7      14 0.00035   17.5   4.5   79   27-107    18-114 (137)
 62 TIGR00511 aIF-2BII_fam transla  57.5     7.7  0.0002   19.4   2.1   32  131-171     9-41  (303)
 63 TIGR02296 HpaC 4-hydroxyphenyl  57.4     3.3 8.5E-05   22.0   0.3   31   37-70      8-38  (157)
 64 cd03822 GT1_ecORF704_like This  56.8     8.4 0.00021   19.1   2.2   30   18-47      2-39  (366)
 65 TIGR00216 ispH_lytB 4-hydroxy-  56.3     7.9  0.0002   19.3   2.0   35   72-116    29-63  (354)
 66 pfam11009 DUF2847 Protein of u  56.3      16  0.0004   17.1   5.4   52  283-336    19-72  (104)
 67 TIGR02906 spore_CotS spore coa  56.2     5.2 0.00013   20.6   1.1  107  234-351    59-183 (321)
 68 KOG3010 consensus               55.7     8.3 0.00021   19.2   2.1   71  298-369     4-83  (261)
 69 cd06330 PBP1_Arsenic_SBP_like   55.6      16 0.00041   17.1   4.1   20  340-359   195-214 (346)
 70 CHL00202 argB acetylglutamate   55.1      15 0.00039   17.2   3.4   37   75-114    21-61  (284)
 71 pfam02679 ComA (2R)-phospho-3-  55.1      16 0.00042   17.0   3.7   51   15-66     43-107 (245)
 72 PRK01388 arginine deiminase; P  54.9      13 0.00033   17.8   2.9   31  475-508   359-389 (410)
 73 PRK07985 oxidoreductase; Provi  52.5      18 0.00046   16.7   8.0   45    2-46     35-79  (294)
 74 TIGR02717 AcCoA-syn-alpha acet  52.3      14 0.00036   17.5   2.8  173  336-520   209-400 (457)
 75 COG2355 Zn-dependent dipeptida  51.9      18 0.00047   16.7   8.1   40  284-328   184-224 (313)
 76 cd01915 CODH Carbon monoxide d  51.6      15 0.00039   17.2   2.9   44  312-366   345-388 (613)
 77 TIGR01090 apt adenine phosphor  51.1     7.6 0.00019   19.4   1.3   17  155-171    23-39  (175)
 78 COG4109 Predicted transcriptio  51.1      19 0.00048   16.6   4.0   76  261-346   261-336 (432)
 79 COG0547 TrpD Anthranilate phos  50.8      18 0.00047   16.7   3.2   66  285-364   106-172 (338)
 80 pfam09989 DUF2229 CoA enzyme a  50.5      19 0.00049   16.5   7.1   95   29-151    14-109 (218)
 81 KOG0832 consensus               50.5      19 0.00049   16.5   3.9   16  132-149    44-59  (251)
 82 PRK10786 ribD bifunctional dia  49.7      20  0.0005   16.4   6.4   25   79-108    71-95  (367)
 83 pfam02603 Hpr_kinase_N HPr Ser  49.5      20 0.00051   16.4   4.4   40  254-294    54-93  (127)
 84 pfam02593 DUF166 Uncharacteriz  48.8      20 0.00052   16.3   4.6   10  286-295   144-153 (215)
 85 pfam05683 Fumerase_C Fumarase   48.7      20 0.00052   16.3   4.5   29  494-524   116-144 (205)
 86 pfam02401 LYTB LytB protein. T  48.5      12  0.0003   18.1   1.9   31   72-110    26-56  (280)
 87 TIGR02153 gatD_arch glutamyl-t  48.0     6.1 0.00016   20.1   0.4   49  485-533   292-347 (413)
 88 PRK13805 bifunctional acetalde  47.9      21 0.00053   16.2   4.6  304   98-458   162-558 (862)
 89 cd01968 Nitrogenase_NifE_I Nit  47.9      14 0.00037   17.4   2.3   32  491-528   348-379 (410)
 90 pfam07799 DUF1643 Protein of u  47.7      11 0.00028   18.3   1.7   49   99-151    39-87  (135)
 91 TIGR02988 YaaA_near_RecF S4 do  47.5     6.4 0.00016   20.0   0.4   35   26-62      5-40  (60)
 92 pfam00762 Ferrochelatase Ferro  46.1      22 0.00057   16.1   4.1   15  343-357   255-269 (312)
 93 PRK06180 short chain dehydroge  45.9      22 0.00057   16.0   4.2  150   14-198     2-168 (277)
 94 pfam07905 PucR Purine cataboli  44.6      23  0.0006   15.9   4.7   43  489-531    61-106 (122)
 95 pfam00383 dCMP_cyt_deam_1 Cyti  44.4      24  0.0006   15.9   8.4   83  418-505     8-102 (104)
 96 LOAD_Ccd2 consensus             43.4      24 0.00062   15.8   3.4   54   94-155    59-113 (114)
 97 pfam11152 DUF2930 Protein of u  43.4      24 0.00062   15.8   7.2   92  408-509    71-166 (196)
 98 TIGR00160 MGSA methylglyoxal s  43.2      18 0.00045   16.8   2.1   48   17-64      4-55  (143)
 99 pfam00625 Guanylate_kin Guanyl  43.2     8.4 0.00022   19.1   0.5   69  132-202    95-165 (182)
100 PRK08251 short chain dehydroge  43.2      25 0.00063   15.7   5.1   39   17-56      3-42  (248)
101 TIGR01137 cysta_beta cystathio  43.0      14 0.00035   17.6   1.5   15  145-159    83-97  (527)
102 pfam02602 HEM4 Uroporphyrinoge  42.6      25 0.00064   15.7   5.5   41  328-368    76-120 (229)
103 PRK06128 oxidoreductase; Provi  41.6      26 0.00066   15.6   7.6   38    8-45     47-84  (300)
104 TIGR02518 EutH_ACDH acetaldehy  41.4     8.6 0.00022   19.0   0.3   38  136-173   192-270 (528)
105 PRK13111 trpA tryptophan synth  41.4      26 0.00067   15.6   4.8   36  333-368   106-144 (256)
106 TIGR01158 SUI1_rel translation  41.3     7.1 0.00018   19.7  -0.1   29   19-51     51-81  (111)
107 TIGR02873 spore_ylxY probable   41.2      26 0.00067   15.5   3.5   36  492-528   170-205 (269)
108 PRK06953 short chain dehydroge  40.7      27 0.00068   15.5   5.0   40   16-55      1-40  (222)
109 COG1880 CdhB CO dehydrogenase/  40.6      26 0.00067   15.5   2.7   46   15-60     34-83  (170)
110 TIGR00506 ribB 3,4-dihydroxy-2  40.0      27 0.00068   15.5   2.7   91  429-528   100-222 (230)
111 PRK12360 4-hydroxy-3-methylbut  39.9      21 0.00054   16.2   2.1   30   74-111    31-60  (281)
112 TIGR00337 PyrG CTP synthase; I  39.6      25 0.00064   15.7   2.5   35   79-114   184-219 (571)
113 pfam02091 tRNA-synt_2e Glycyl-  39.4      10 0.00027   18.4   0.5   20  221-240    55-74  (284)
114 TIGR01830 3oxo_ACP_reduc 3-oxo  39.4      28 0.00071   15.3   6.0   44  418-468   107-158 (238)
115 TIGR00070 hisG ATP phosphoribo  39.0      19 0.00047   16.6   1.7   15  343-357   131-145 (317)
116 PRK02491 putative deoxyribonuc  38.6      22 0.00055   16.1   2.0   42  416-459   176-217 (328)
117 COG2428 Uncharacterized conser  38.4      25 0.00065   15.6   2.3   52   29-82     17-71  (196)
118 PRK02304 adenine phosphoribosy  38.1      11 0.00028   18.3   0.4   23  150-172    21-44  (174)
119 COG0108 RibB 3,4-dihydroxy-2-b  38.0      29 0.00075   15.2   4.1   38  491-528   146-190 (203)
120 PRK13113 consensus              37.3      30 0.00076   15.1   4.5   34  335-368   117-153 (263)
121 COG3185 4-hydroxyphenylpyruvat  37.2      30 0.00077   15.1   4.0   66  290-359   213-297 (363)
122 TIGR02364 dha_pts dihydroxyace  36.9      23 0.00059   15.9   1.9   31   19-49      4-37  (128)
123 PRK00164 moaA molybdenum cofac  36.8      30 0.00078   15.1   7.2   75   27-113    82-167 (334)
124 KOG2811 consensus               36.5      22 0.00055   16.1   1.7   49  271-321   248-309 (420)
125 pfam08149 BING4CT BING4CT (NUC  36.2     8.9 0.00023   18.9  -0.3   34  475-508     7-40  (80)
126 PRK02492 deoxyhypusine synthas  36.2      31 0.00079   15.0   3.2   22   27-48     72-95  (344)
127 cd04724 Tryptophan_synthase_al  36.0      31  0.0008   15.0   4.8   32  337-368   101-135 (242)
128 PRK13127 consensus              35.7      32 0.00081   14.9   4.7   32  337-368   112-146 (262)
129 PRK01185 ppnK inorganic polyph  35.5      32 0.00081   14.9   3.7   44   16-59      1-47  (272)
130 pfam04210 MtrG Tetrahydrometha  35.2      30 0.00078   15.1   2.3   20  154-173     5-24  (70)
131 smart00854 PGA_cap Bacterial c  35.1      32 0.00082   14.9   4.7   11  106-116    30-40  (239)
132 PRK13137 consensus              34.7      33 0.00083   14.8   4.5   34  335-368   123-159 (266)
133 PRK13131 consensus              34.7      33 0.00083   14.8   4.3   10  301-310    57-66  (257)
134 cd01391 Periplasmic_Binding_Pr  34.6      33 0.00084   14.8   5.6   87  269-360   111-201 (269)
135 cd01981 Pchlide_reductase_B Pc  34.5      33 0.00084   14.8   3.2   70  253-340   167-236 (430)
136 cd06319 PBP1_ABC_sugar_binding  34.5      33 0.00084   14.8   4.7   54  305-360   175-231 (277)
137 KOG0774 consensus               34.5      33 0.00084   14.8   3.2   67  326-396   193-259 (334)
138 TIGR03627 arch_S9P archaeal ri  34.2      28 0.00071   15.3   2.0   22  444-465    64-85  (130)
139 PTZ00094 serine hydroxymethylt  34.1      27 0.00069   15.4   1.9   72  318-391   248-348 (450)
140 TIGR00338 serB phosphoserine p  34.0      34 0.00086   14.8   3.6   84   26-114    88-178 (223)
141 TIGR02346 chap_CCT_theta T-com  33.9      34 0.00086   14.7   3.8   43  407-457   380-428 (554)
142 PRK13978 ribose-5-phosphate is  33.7      34 0.00086   14.7   3.8   34  132-165    93-128 (228)
143 KOG4127 consensus               33.6      34 0.00087   14.7   5.6   52  268-328   255-307 (419)
144 PRK04046 translation initiatio  33.6      34 0.00087   14.7   2.6   64  290-367    62-135 (221)
145 PRK13122 consensus              33.6      34 0.00087   14.7   4.4   12  341-352   104-115 (242)
146 PRK09522 bifunctional anthrani  33.5      29 0.00074   15.2   2.0   68  284-365   301-369 (531)
147 PRK01792 ribB 3,4-dihydroxy-2-  33.4      34 0.00087   14.7   4.4   38  491-528   157-201 (214)
148 cd06578 HemD Uroporphyrinogen-  33.1      35 0.00088   14.7   5.8   43  328-370    84-130 (239)
149 TIGR01283 nifE nitrogenase MoF  32.7      35  0.0009   14.6   3.4   34  499-532   337-370 (470)
150 smart00654 eIF6 translation in  32.7      35  0.0009   14.6   2.6   62  291-366    61-134 (200)
151 PRK01026 tetrahydromethanopter  32.6      34 0.00086   14.8   2.2   20  154-173     6-25  (75)
152 PRK04200 cofactor-independent   32.5      35  0.0009   14.6   4.7   29  227-256   204-232 (395)
153 TIGR01702 CO_DH_cata carbon-mo  32.3      36 0.00091   14.6   2.4   58  327-393   373-436 (647)
154 cd03376 TPP_PFOR_porB_like Thi  32.2      26 0.00065   15.6   1.5   29  136-164    93-121 (235)
155 COG0752 GlyQ Glycyl-tRNA synth  32.1      24 0.00062   15.8   1.4   22  219-240    59-80  (298)
156 PRK06721 threonine synthase; R  31.8      36 0.00092   14.5   3.3   15  145-159    93-107 (352)
157 pfam01634 HisG ATP phosphoribo  31.8      26 0.00066   15.6   1.5   27  343-369    66-93  (161)
158 cd04630 CBS_pair_17 The CBS do  31.8      36 0.00093   14.5   4.6   92  352-444    14-105 (114)
159 cd00733 GlyRS_alpha_core Class  31.6      23 0.00058   16.0   1.2   21  220-240    55-75  (279)
160 PRK07576 short chain dehydroge  31.5      37 0.00094   14.5   6.9   40   15-54      7-46  (260)
161 CHL00079 rps9 ribosomal protei  31.4      25 0.00064   15.7   1.4   23  443-465    71-93  (134)
162 TIGR01326 OAH_OAS_sulfhy O-ace  31.4      37 0.00094   14.5   2.6   83  246-337   285-368 (434)
163 PRK12825 fabG 3-ketoacyl-(acyl  31.1      37 0.00095   14.4   5.7   90   12-119     3-96  (250)
164 PRK06701 short chain dehydroge  31.0      37 0.00095   14.4   7.3   42    7-48     36-77  (289)
165 PRK09348 glyQ glycyl-tRNA synt  31.0      20 0.00051   16.4   0.8   20  221-240    58-77  (291)
166 pfam05505 Ebola_NP Ebola nucle  30.9      28 0.00071   15.4   1.5   58   16-73     18-103 (717)
167 PRK13584 hisG ATP phosphoribos  30.7      28 0.00071   15.3   1.5   13   95-107    52-64  (204)
168 TIGR02124 hypE hydrogenase exp  30.6      24 0.00062   15.8   1.2  123  253-388   188-330 (345)
169 COG0462 PrsA Phosphoribosylpyr  30.2      25 0.00063   15.7   1.2   18  343-360   248-265 (314)
170 PRK07454 short chain dehydroge  30.1      39 0.00099   14.3   6.5   85   13-116     3-91  (241)
171 PRK13135 consensus              30.0      39 0.00099   14.3   4.4   34  335-368   116-152 (267)
172 PRK01686 hisG ATP phosphoribos  29.9      29 0.00074   15.2   1.5   57   48-116    16-73  (212)
173 CHL00200 trpA tryptophan synth  29.8      39 0.00099   14.3   4.4   44  266-312    27-72  (263)
174 PRK00011 glyA serine hydroxyme  29.8      35  0.0009   14.6   1.9   16  319-338   235-250 (415)
175 PRK13112 consensus              29.6      39   0.001   14.3   4.6   37  332-368   115-154 (279)
176 cd01310 TatD_DNAse TatD like p  29.6      39   0.001   14.3   4.3   29  144-172    22-51  (251)
177 PRK09291 short chain dehydroge  29.4      40   0.001   14.2   3.3  120   17-163     3-136 (257)
178 PRK03244 argD acetylornithine   29.4      40   0.001   14.2   4.0   17  504-520   370-386 (398)
179 COG4079 Uncharacterized protei  29.3      40   0.001   14.2   3.4   40   30-69     47-87  (293)
180 pfam01884 PcrB PcrB family. Th  29.1      40   0.001   14.2   4.1   50  482-531   163-212 (231)
181 PTZ00086 40S ribosomal protein  29.0      28 0.00071   15.3   1.3   22  444-465    74-95  (147)
182 KOG4226 consensus               29.0      15 0.00038   17.3  -0.1   44  342-386   192-236 (379)
183 PRK13222 phosphoglycolate phos  29.0      40   0.001   14.2   5.2   18  491-508   178-195 (228)
184 PRK09072 short chain dehydroge  28.9      40   0.001   14.2   4.5  123   14-160     3-139 (262)
185 TIGR00732 dprA DNA protecting   28.8      40   0.001   14.2   2.6   34  400-436    60-93  (238)
186 TIGR01584 citF citrate lyase,   28.8      22 0.00055   16.2   0.7   25   31-55    113-137 (496)
187 KOG4627 consensus               28.7      41   0.001   14.2   3.8   51  220-276    42-92  (270)
188 KOG0673 consensus               28.7      35  0.0009   14.6   1.7   32   34-65     79-110 (293)
189 PRK00087 4-hydroxy-3-methylbut  28.6      37 0.00094   14.5   1.8   47  288-335   184-230 (670)
190 TIGR00568 alkb alkylated DNA r  28.6      21 0.00055   16.2   0.6   90  411-536   101-197 (199)
191 TIGR02326 transamin_PhnW 2-ami  28.5      17 0.00044   16.9   0.1  127  177-323    37-178 (366)
192 COG1976 TIF6 Translation initi  28.4      41   0.001   14.1   2.4   34  313-360    96-129 (222)
193 KOG0923 consensus               28.3      41  0.0011   14.1   3.1   36  133-170   194-234 (902)
194 COG0112 GlyA Glycine/serine hy  28.3      35 0.00089   14.6   1.7   20  317-339   234-253 (413)
195 PRK08267 short chain dehydroge  28.3      41  0.0011   14.1   6.7   80   16-116     1-85  (258)
196 PRK05819 deoD purine nucleosid  28.1      42  0.0011   14.1   4.0   29  416-444   182-210 (235)
197 PRK00035 hemH ferrochelatase;   27.9      42  0.0011   14.1   4.0   15  343-357   262-276 (325)
198 PRK06209 glutamate-1-semialdeh  27.4      43  0.0011   14.0   4.8   28  257-289   167-194 (431)
199 pfam08727 P3A Poliovirus 3A pr  27.2      35 0.00089   14.6   1.5   15  509-523    26-40  (57)
200 COG0159 TrpA Tryptophan syntha  27.2      43  0.0011   14.0   4.5   12  267-278   193-204 (265)
201 TIGR00977 LeuA_rel 2-isopropyl  27.2      43  0.0011   14.0   2.2   84   92-196    46-134 (543)
202 PRK13324 pantothenate kinase;   27.1      43  0.0011   14.0   2.2   14  339-352   145-158 (258)
203 TIGR00109 hemH ferrochelatase;  27.1      43  0.0011   14.0   4.3   17  343-359   281-297 (339)
204 TIGR00519 asnASE_I L-asparagin  27.0      22 0.00057   16.0   0.5   25  343-367   225-250 (347)
205 pfam00380 Ribosomal_S9 Ribosom  27.0      27 0.00069   15.5   0.9   49  411-465    32-80  (121)
206 PRK13580 serine hydroxymethylt  27.0      40   0.001   14.2   1.8   26  404-429   423-449 (493)
207 PRK10425 DNase TatD; Provision  26.8      44  0.0011   13.9   4.4   32  144-175    22-54  (258)
208 PRK11864 2-ketoisovalerate fer  26.8      29 0.00075   15.2   1.1   29  136-164   105-133 (300)
209 KOG0525 consensus               26.7      44  0.0011   13.9   2.3   86  320-412    98-190 (362)
210 cd07571 ALP_N-acyl_transferase  26.7      33 0.00085   14.8   1.3   70  417-512   162-233 (270)
211 cd04872 ACT_1ZPV ACT domain pr  26.7      44  0.0011   13.9   3.5   29   18-46      1-32  (88)
212 PRK01045 ispH 4-hydroxy-3-meth  26.5      44  0.0011   13.9   1.9   29   74-110    30-58  (304)
213 PRK13371 4-hydroxy-3-methylbut  26.4      40   0.001   14.2   1.7   70   31-111    28-104 (392)
214 COG1013 PorB Pyruvate:ferredox  26.3      31  0.0008   15.0   1.1   29  136-164   101-129 (294)
215 PRK11867 2-oxoglutarate ferred  26.3      45  0.0011   13.9   4.1   29  136-164    99-127 (280)
216 TIGR00520 asnASE_II L-asparagi  26.3      25 0.00063   15.7   0.6   15  380-394   197-211 (360)
217 COG1587 HemD Uroporphyrinogen-  26.2      45  0.0011   13.8   5.9  145  328-510    85-233 (248)
218 TIGR01918 various_sel_PB selen  26.1      44  0.0011   13.9   1.9   38  426-463   153-190 (433)
219 TIGR03568 NeuC_NnaA UDP-N-acet  26.1      45  0.0011   13.8   4.4   32   29-60     16-58  (365)
220 PTZ00298 mevalonate kinase; Pr  26.1      25 0.00063   15.7   0.6   27  287-328   145-171 (328)
221 PRK12823 benD 1,6-dihydroxycyc  26.0      45  0.0012   13.8   8.3   38   12-49      4-41  (260)
222 COG1483 Predicted ATPase (AAA+  26.0      45  0.0012   13.8   2.1  114   24-160    98-230 (774)
223 pfam11564 BpuJI_N Restriction   25.9      42  0.0011   14.0   1.8   19  406-424   266-284 (294)
224 cd00610 OAT_like Acetyl ornith  25.9      45  0.0012   13.8   3.1   18  504-521   391-408 (413)
225 pfam05327 RRN3 RNA polymerase   25.9      25 0.00064   15.7   0.6   72  129-205   150-223 (550)
226 COG1433 Uncharacterized conser  25.8      45  0.0012   13.8   2.3   58  330-392    55-112 (121)
227 KOG1203 consensus               25.8      19 0.00049   16.5  -0.0   16  143-158   188-203 (411)
228 PRK00474 rps9p 30S ribosomal p  25.8      43  0.0011   14.0   1.8   21  444-464    66-86  (132)
229 pfam01912 eIF-6 eIF-6 family.   25.6      46  0.0012   13.8   3.5   63  291-367    61-133 (198)
230 pfam00290 Trp_syntA Tryptophan  25.6      46  0.0012   13.8   4.4   33  336-368   110-145 (258)
231 PRK07814 short chain dehydroge  25.5      46  0.0012   13.8   6.4   87   13-117     7-96  (263)
232 KOG1753 consensus               25.5      39 0.00098   14.3   1.5   23  442-464    70-92  (145)
233 pfam04963 Sigma54_CBD Sigma-54  25.3      46  0.0012   13.7   4.5  101  265-395    67-183 (195)
234 PRK13123 consensus              25.2      47  0.0012   13.7   4.6   17  341-357   118-134 (256)
235 PRK13140 consensus              25.1      47  0.0012   13.7   4.7  101  266-369    26-151 (257)
236 PRK00188 trpD anthranilate pho  25.0      47  0.0012   13.7   2.9   40  324-363   130-170 (339)
237 PRK13034 serine hydroxymethylt  24.9      36 0.00091   14.6   1.2   18  318-338   240-257 (422)
238 PRK00230 orotidine 5'-phosphat  24.9      45  0.0011   13.8   1.7   58  138-201    89-155 (231)
239 PRK12418 cysteinyl-tRNA synthe  24.7      42  0.0011   14.1   1.5  115   13-154     9-123 (384)
240 pfam01045 consensus             24.7      25 0.00064   15.7   0.4   15  157-171   112-126 (411)
241 COG1803 MgsA Methylglyoxal syn  24.5      48  0.0012   13.6   3.9  116   15-170     4-123 (142)
242 PRK13120 consensus              24.5      48  0.0012   13.6   4.3  142  333-520   119-265 (285)
243 PRK13374 purine nucleoside pho  24.4      48  0.0012   13.6   3.7   26  417-442   184-209 (233)
244 pfam01244 Peptidase_M19 Membra  24.3      48  0.0012   13.6   7.2  187   96-327    35-232 (316)
245 PRK03675 consensus              23.9      40   0.001   14.2   1.4   24  479-504   234-257 (279)
246 PRK06500 short chain dehydroge  23.7      50  0.0013   13.5   4.8   44   13-56      3-46  (249)
247 PRK13973 thymidylate kinase; P  23.6      50  0.0013   13.5   3.2  100   52-161    26-138 (216)
248 cd03375 TPP_OGFOR Thiamine pyr  23.5      40   0.001   14.2   1.3   30  136-165    82-111 (193)
249 cd00587 HCP_like The HCP famil  23.5      50  0.0013   13.5   3.7   39  319-359   159-206 (258)
250 KOG2474 consensus               23.5      50  0.0013   13.5   1.9   55  259-319   230-293 (406)
251 PRK02842 light-independent pro  23.5      50  0.0013   13.5   3.5   30   27-56     26-55  (425)
252 PRK09607 rps11p 30S ribosomal   23.4      50  0.0013   13.5   4.0   21   50-70     94-114 (129)
253 PRK13583 hisG ATP phosphoribos  23.4      22 0.00057   16.1  -0.1  128   47-207    15-149 (226)
254 pfam01026 TatD_DNase TatD rela  23.4      50  0.0013   13.5   3.4   15  353-367   188-202 (255)
255 pfam09894 DUF2121 Uncharacteri  23.4      41  0.0011   14.1   1.3   40   30-69     47-86  (194)
256 cd02018 TPP_PFOR Thiamine pyro  23.3      41   0.001   14.2   1.3   29  136-164   100-128 (237)
257 KOG1712 consensus               23.3      28 0.00071   15.3   0.4   16  155-170    33-48  (183)
258 PRK09628 oorB 2-oxoglutarate-a  23.3      50  0.0013   13.5   3.8   30  135-164    98-127 (281)
259 TIGR02329 propionate_PrpR prop  23.1      51  0.0013   13.5   3.4   60  251-316   115-189 (658)
260 PRK10424 ilvG operon leader pe  23.1      35 0.00089   14.6   0.9   14  285-300    16-29  (32)
261 PRK07394 hypothetical protein;  23.1      51  0.0013   13.4   3.0   64  284-364   112-182 (342)
262 COG2046 MET3 ATP sulfurylase (  22.9      51  0.0013   13.4   2.9   70   83-176     5-74  (397)
263 PRK00912 ribonuclease P protei  22.8      51  0.0013   13.4   3.9   19   28-46     20-38  (237)
264 TIGR01220 Pmev_kin_Gr_pos phos  22.8      31  0.0008   15.0   0.6   78  315-395   175-264 (367)
265 TIGR03447 mycothiol_MshC cyste  22.8      52  0.0013   13.4   1.8  108   21-155    44-151 (411)
266 TIGR01182 eda 2-dehydro-3-deox  22.7      52  0.0013   13.4   3.9   33  491-526    73-105 (205)
267 cd01398 RPI_A RPI_A: Ribose 5-  22.6      52  0.0013   13.4   4.1   30  135-164    90-121 (213)
268 TIGR02253 CTE7 HAD superfamily  22.6      52  0.0013   13.4   7.1   16   27-42    116-131 (244)
269 PRK13124 consensus              22.5      52  0.0013   13.4   4.2   12  341-352   114-125 (257)
270 TIGR02460 osmo_MPGsynth mannos  22.5      47  0.0012   13.7   1.5   23  253-277   162-189 (394)
271 KOG3185 consensus               22.5      51  0.0013   13.4   1.6   34  312-359    98-131 (245)
272 PRK11865 pyruvate ferredoxin o  22.3      33 0.00084   14.8   0.6   29  136-164   102-130 (298)
273 pfam00464 SHMT Serine hydroxym  22.3      42  0.0011   14.0   1.2   14  264-277   146-159 (380)
274 COG0449 GlmS Glucosamine 6-pho  22.2      53  0.0013   13.3   2.6   20   30-49    106-125 (597)
275 COG0120 RpiA Ribose 5-phosphat  22.2      53  0.0013   13.3   2.6   70   95-167    56-128 (227)
276 cd01977 Nitrogenase_VFe_alpha   22.2      47  0.0012   13.7   1.4   16   73-88     18-33  (415)
277 cd01301 rDP_like renal dipepti  22.2      53  0.0013   13.3   6.0  181   97-327    30-228 (309)
278 PRK11449 putative deoxyribonuc  22.2      53  0.0013   13.3   4.2   31  143-173    25-56  (258)
279 pfam01939 DUF91 Protein of unk  22.1      53  0.0014   13.3   2.2   61  284-370   150-212 (228)
280 PRK06182 short chain dehydroge  22.1      53  0.0014   13.3   6.1   40   15-55      2-42  (273)
281 TIGR01826 CofD_related conserv  22.1      53  0.0014   13.3   2.5   18  141-158    11-31  (331)
282 TIGR00601 rad23 UV excision re  22.1      42  0.0011   14.0   1.1  353   34-498     7-444 (453)
283 pfam08887 GAD-like GAD-like do  22.0      15 0.00039   17.3  -1.2   35  130-171    34-69  (109)
284 PRK13129 consensus              21.9      54  0.0014   13.3   4.3   32  337-368   120-154 (267)
285 TIGR02036 dsdC D-serine deamin  21.7      49  0.0013   13.5   1.4   15  512-526   233-247 (302)
286 cd06345 PBP1_ABC_ligand_bindin  21.7      54  0.0014   13.3   4.2   35   29-63     55-97  (344)
287 PRK10355 xylF D-xylose transpo  21.7      54  0.0014   13.3   4.9   43  317-359   211-256 (330)
288 PRK07168 bifunctional uroporph  21.5      54  0.0014   13.2   1.7  183  317-525   249-456 (474)
289 pfam02449 Glyco_hydro_42 Beta-  21.5      49  0.0012   13.6   1.4   29  300-328   166-194 (376)
290 cd01539 PBP1_GGBP Periplasmic   21.4      55  0.0014   13.2   5.3   17  320-336   204-220 (303)
291 cd05313 NAD_bind_2_Glu_DH NAD(  21.4      55  0.0014   13.2   1.6   38  323-361   129-170 (254)
292 PRK00168 coaD phosphopantethei  21.4      55  0.0014   13.2   2.4   48  136-192    13-60  (159)
293 cd06380 PBP1_iGluR_AMPA N-term  21.4      55  0.0014   13.2   3.3   26  480-505   316-347 (382)
294 TIGR02434 CobF precorrin-6A sy  21.4      46  0.0012   13.8   1.2   11  195-205    80-90  (259)
295 COG2820 Udp Uridine phosphoryl  21.3      46  0.0012   13.8   1.2   36  412-447   189-226 (248)
296 PRK13361 molybdenum cofactor b  21.1      55  0.0014   13.2   8.5   76   27-115    76-163 (329)
297 PRK13118 consensus              21.1      55  0.0014   13.2   3.4   13  340-352   122-134 (269)
298 PTZ00136 eukaryotic translatio  21.0      56  0.0014   13.2   3.7   40  313-366    99-138 (247)
299 PRK06846 deaminase; Validated   20.8      56  0.0014   13.1   2.8   15   70-84     34-48  (410)
300 PRK00132 rpsI 30S ribosomal pr  20.8      50  0.0013   13.5   1.3   22  443-464    67-88  (130)
301 PRK12828 short chain dehydroge  20.8      56  0.0014   13.1   6.2   43   13-55      4-46  (239)
302 PRK12826 3-ketoacyl-(acyl-carr  20.5      57  0.0015   13.1   2.9   43   13-55      3-45  (253)
303 COG1838 FumA Tartrate dehydrat  20.4      57  0.0015   13.1   3.8   55  313-370    88-145 (184)
304 COG4750 LicC CTP:phosphocholin  20.3      24 0.00062   15.8  -0.4   42   73-114    10-54  (231)
305 PRK00120 putative deoxyribonuc  20.2      33 0.00084   14.8   0.3   30   16-45      2-31  (197)
306 PRK02478 Maf-like protein; Rev  20.2      47  0.0012   13.7   1.0   46  227-277   147-194 (199)
307 PRK11866 2-oxoacid ferredoxin   20.0      58  0.0015   13.0   5.3   30  136-165    98-127 (286)

No 1  
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=100.00  E-value=0  Score=1662.98  Aligned_cols=511  Identities=59%  Similarity=0.950  Sum_probs=493.3

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             76136989987545686999999998799999942768999988995179465348816519855323715553553308
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r   92 (536)
                      |.+||||||||||||||++||+.|+++||||+|||||+++|+++||||++|||+||||||||||||||||+||||||+||
T Consensus         1 r~~ikrALISV~DKtgl~~la~~L~~~g~eiiSTGGTak~l~~~gi~v~~Vs~~T~fpEil~GRVKTLHP~IhgGIL~~r   80 (514)
T PRK00881          1 RRMIKRALISVSDKTGIVEFAKALVALGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILARR   80 (514)
T ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEHHHCCCCHHHHCCCCCCCCCHHHHHHHCCC
T ss_conf             99764799998866498999999998898999872789999987996588886049806529815646830226661378


Q ss_pred             CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             89899999997799841499994888899731765-31123200233434699987401563135308999898898753
Q gi|254780664|r   93 DNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMD  171 (536)
Q Consensus        93 ~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~  171 (536)
                      ++++|+++|+++||++|||||||||||++++++++ +++++|||||||||||||||||||++|+|||||+||+.++++|+
T Consensus        81 ~~~~h~~~l~~~~i~~IDlVvvNLYPFe~~v~~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~~l~  160 (514)
T PRK00881         81 DNPEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIENIDIGGPTMVRAAAKNHKDVTVVVDPADYDAVLEELK  160 (514)
T ss_pred             CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
T ss_conf             98889999997699963389981454698750489998999884477749999998744787599647899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCCC
Q ss_conf             023456667889999999998742289999875331012113443210123333436788100650576047-7668210
Q gi|254780664|r  172 VNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPE-KKSGIAH  250 (536)
Q Consensus       172 ~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~-~~~~~~~  250 (536)
                      ++ |++++++|++||.|||++||+||++|++||+++.++.+|+.+.+++++.++|||||||||+|++|.... ...++.+
T Consensus       161 ~~-g~~s~~~R~~lA~kAF~~Ta~YD~~Is~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~aa~Y~~~~~~~~~~~~  239 (514)
T PRK00881        161 AN-GSTSLETRFRLAAKAFAHTAAYDAAIANYFASQAGEEFPETLNLSFEKKQDLRYGENPHQKAAFYRDKDGPAGGVAT  239 (514)
T ss_pred             HC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             67-99799999999999999987608999999865301458621787142034542688814131430577767766421


Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCH
Q ss_conf             12105898883122212001167764245567279996156865654520168999999853321320045554275421
Q gi|254780664|r  251 AVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQ  330 (536)
Q Consensus       251 ~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~  330 (536)
                      ++||||||||||||+|+|+||+||+||.+   |+||||||+||||||+++++.+||++|++|||+||||||||||++||.
T Consensus       240 ~~ql~GKeLSYNN~lD~daA~~lv~ef~~---pa~vIiKH~nPCGvA~~~~~~~Ay~~A~~~Dp~SAFGGIva~N~~vd~  316 (514)
T PRK00881        240 AKQLQGKELSYNNIADADAALECVKEFDE---PACVIVKHANPCGVAVGDTILEAYDKAYACDPVSAFGGIIAFNREVDA  316 (514)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHCCC---CEEEEEECCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCH
T ss_conf             11005876674447668999999983667---689999516874020465799999998704974545747996262689


Q ss_pred             HHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCC-CCCCCCCCCCCCC
Q ss_conf             457878865431111268798999885124553156316766777666402032102231012334-5310001246777
Q gi|254780664|r  331 EVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNV-VDNKELTVVTKRS  409 (536)
Q Consensus       331 ~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~-~~~~~~~vVT~~~  409 (536)
                      ++|++|.+.|+||||||+|++|||++|++|||+|+|++...   ....+++|++.||+|+|++|.. ++..+|++||+++
T Consensus       317 ~~A~~i~~~F~EvIiAP~f~~eAL~iL~~KKNlRvl~~~~~---~~~~~~~rsi~GG~LvQ~~D~~~~~~~~~k~VT~~~  393 (514)
T PRK00881        317 ETAEAIVKIFLEVIIAPSFDEEALEILAKKKNLRLLECGEL---PDPGLDFKSVSGGLLVQDRDNGMVDPADLKVVTKRQ  393 (514)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCC---CCCCCEEEEEECEEEEEECCCCCCCHHHCEECCCCC
T ss_conf             99999999888741178899899999863985699815887---888742899954299984577778988843113899


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             86889888999999860056677999968938997296888899999999998764200122223487099973668685
Q gi|254780664|r  410 PTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFP  489 (536)
Q Consensus       410 pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~  489 (536)
                      |+++|++||+|||+|||||||||||++||++|||||+||||||||++||++||++++.      .++|+|||||||||||
T Consensus       394 p~~~e~~DL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~sRVda~~iA~~ka~~~~~------~~~g~vlASDAFFPF~  467 (514)
T PRK00881        394 PTEQELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSAKIALEKAGDAGL------DLKGSVLASDAFFPFR  467 (514)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCC------CCCCCEEEECCCCCCC
T ss_conf             8989986569999998636655699994893898678975689999999999886345------6678489956778874


Q ss_pred             CHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             55899997199599938987798899999987597799747854479
Q gi|254780664|r  490 DGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH  536 (536)
Q Consensus       490 D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H  536 (536)
                      ||||.|+++||++||||||||||+|||++|||+||+|+|||.|||||
T Consensus       468 D~ie~aa~~Gv~aIiQPGGSirD~evI~aan~~gi~M~fTg~RhF~H  514 (514)
T PRK00881        468 DGVEAAAKAGITAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRHFRH  514 (514)
T ss_pred             HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             47999998599099899975363999999997098799858766379


No 2  
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=1602.05  Aligned_cols=513  Identities=58%  Similarity=0.933  Sum_probs=496.7

Q ss_pred             CEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             13698998754568699999999879999994276899998899517946534881651985532371555355330889
Q gi|254780664|r   15 AVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDN   94 (536)
Q Consensus        15 ~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~   94 (536)
                      +||||||||||||||++||+.|.++||||+|||||++.|+++||||++|||+||||||||||||||||+||||||+||+.
T Consensus         1 ~ikrALiSVsdKtGive~ak~L~~~gvei~STGGTak~l~eaGi~V~~Vs~~TgfpE~ldGRVKTLHP~ihgGiL~~r~~   80 (515)
T COG0138           1 MIKRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDGRVKTLHPKIHGGILARRDK   80 (515)
T ss_pred             CCCHHHEEECCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCCHHHCCCCHHHHCCCCEEECCCCCCCEEECCCC
T ss_conf             91222322003527099999998677799955977999996799777154224875673784134134501323320365


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCC
Q ss_conf             899999997799841499994888899731765-3112320023343469998740156313530899989889875302
Q gi|254780664|r   95 PAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus        95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~  173 (536)
                      ++|+++|++++|.+|||||||||||++|+.+++ +++|+|||||||||||||||||||++|+|+|||.||+.++++|+.+
T Consensus        81 ~~h~~~l~e~~I~~iDlVvvNLYPF~~tv~~~~~~~~e~vEnIDIGGptmlRaAAKN~~~V~V~~dp~Dy~~vl~~l~~~  160 (515)
T COG0138          81 DEHMAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAVENIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELKAN  160 (515)
T ss_pred             HHHHHHHHHCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCC
T ss_conf             77899999759877547998479825421679998898875655676177687663258705986601468999998547


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf             34566678899999999987422899998753310121134432101233334367881006505760477668210121
Q gi|254780664|r  174 NGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVL  253 (536)
Q Consensus       174 ~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~q  253 (536)
                       |++++++|++||.|||+|||+||++|++||++.....||+.+.+.+.+.++|||||||||+|+||.+.....+++.++|
T Consensus       161 -~~~~~~~R~~lA~kaF~hTA~YDaaI~~~~~~~~~~~fp~~~~~~~~~~~~lRYGENPHQ~aa~Y~~~~~~~~va~a~q  239 (515)
T COG0138         161 -GELSLATRKRLAAKAFEHTAAYDAAIANYFSELLGGEFPEQLNLSFTKKQDLRYGENPHQSAAFYRDGNAKGGVATAKQ  239 (515)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf             -8877899999999999987666999999997531133641110243200010057897778747841787876034787


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
Q ss_conf             05898883122212001167764245567279996156865654520168999999853321320045554275421457
Q gi|254780664|r  254 VQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVA  333 (536)
Q Consensus       254 l~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A  333 (536)
                      ||||+||||||+|+|+||+||+||.+. .|+||||||+||||||+++++.+||.+||+|||+||||||||+|++||.+||
T Consensus       240 L~GK~lSYNNi~DaDaA~~~v~ef~~~-~pa~~ivKH~NPcGvA~~~~i~~Ay~~A~~~D~~SaFGGIIA~Nr~vD~etA  318 (515)
T COG0138         240 LQGKELSYNNIADADAAWELVKEFDEP-GPACAIVKHANPCGVAVGDTIAEAYKRAYEADPTSAFGGIIALNREVDVETA  318 (515)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHH
T ss_conf             559725425255379999999855776-7618998437874010280599999999707972234788997474599999


Q ss_pred             HHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCC-CCCCCCCCCCCCCCCH
Q ss_conf             878865431111268798999885124553156316766777666402032102231012334-5310001246777868
Q gi|254780664|r  334 KEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNV-VDNKELTVVTKRSPTD  412 (536)
Q Consensus       334 ~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~-~~~~~~~vVT~~~pt~  412 (536)
                      +.|+++|+||||||+|++|||+||++|||+|+|++..+ .+....+++|+|.||+|+|++|.. ++..+|++||+++||+
T Consensus       319 ~~i~~~F~EvIIAP~~~~~Al~il~kK~NlRvL~~~~~-~~~~~~~~~k~v~GGlLvQ~~d~~~~~~~~~~vVTkr~pt~  397 (515)
T COG0138         319 EAISKIFLEVIIAPSYTEEALEILAKKKNLRVLTIGPL-GPRAAGLEFKRVSGGLLVQERDDGMIDEAELKVVTKRQPTE  397 (515)
T ss_pred             HHHHHHHEEEEECCCCCHHHHHHHHHCCCEEEEECCCC-CCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEECCCCCCH
T ss_conf             99986607999868999899999962576589964887-77776426899820589974644566730106742789998


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf             89888999999860056677999968938997296888899999999998764200122223487099973668685558
Q gi|254780664|r  413 QELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGI  492 (536)
Q Consensus       413 ~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~i  492 (536)
                      +||+||+|||+|||||||||||++||++|||||+||||||||+|||+.||++++..      ++||||||||||||||||
T Consensus       398 ~e~~dl~Fawkv~k~vKSNaIv~akd~~TvGiGaGQ~sRV~sariA~~kA~~~~~~------~~Gav~ASDAFFPF~D~i  471 (515)
T COG0138         398 QELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGLR------AHGAVLASDAFFPFPDGI  471 (515)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH------CCCCEEEECCCCCCCCHH
T ss_conf             99999999999986703453999709838875688511588999999987776531------268177523557886139


Q ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             99997199599938987798899999987597799747854479
Q gi|254780664|r  493 VEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH  536 (536)
Q Consensus       493 e~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H  536 (536)
                      +.|+++||+|||||||||||+|||++||||||+|||||.|||||
T Consensus       472 ~~aA~aGi~aIIqPGGSirD~eVI~aAde~giaMvfTg~RhF~H  515 (515)
T COG0138         472 DAAAKAGIKAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRHFRH  515 (515)
T ss_pred             HHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             99997498699779986664999998886196799745433379


No 3  
>KOG2555 consensus
Probab=100.00  E-value=0  Score=1170.73  Aligned_cols=503  Identities=37%  Similarity=0.613  Sum_probs=462.2

Q ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHH
Q ss_conf             69899875456869999999987999999427689999889951794653488165198553237155535533088989
Q gi|254780664|r   17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPA   96 (536)
Q Consensus        17 krALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~   96 (536)
                      |.|||||||||||.+|+++|.++|+.|++|||||+.|+++|++|++||++|+||||||||||||||.||||||+| |.++
T Consensus         5 k~AllSVsDKtgLl~La~gL~~~g~~lvaSGGTAk~lrdaG~~V~dVs~iT~fPEMLgGRVKTLHPaVHgGILAR-dies   83 (588)
T KOG2555           5 KLALLSVSDKTGLLDLAKGLVELGVTLVASGGTAKMLRDAGLPVRDVSEITHFPEMLGGRVKTLHPAVHGGILAR-DIES   83 (588)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCCEEEC-CCCH
T ss_conf             379999615657588875788648289942861777986798500087642885874871100264100253314-5700


Q ss_pred             HHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCC
Q ss_conf             9999997799841499994888899731765-311232002334346999874015631353089998988987530234
Q gi|254780664|r   97 HMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNG  175 (536)
Q Consensus        97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~~g  175 (536)
                      |+++|++++|..||+||||||||.+||++++ +.+|++||||||||||||||||||++|+|+|||.||+.|+++|...  
T Consensus        84 d~kdL~e~~i~~vdvVVcNLYPF~etVa~pgvtveeaVEnIDIGGvTLLRAAAKNH~rVtiv~dp~DY~~vlsel~~~--  161 (588)
T KOG2555          84 DEKDLKEQGIDKVDVVVCNLYPFKETVAKPGVTVEEAVENIDIGGVTLLRAAAKNHARVTIVCDPADYDAVLSELKSS--  161 (588)
T ss_pred             HHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCC--
T ss_conf             288998748874779998240137651689976787766426552999999873577179995636789999997426--


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCC-EEEECCCCCCCCCCHHHC
Q ss_conf             5666788999999999874228999987533101211344321012333343678810065-057604776682101210
Q gi|254780664|r  176 KIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKA-ALYSTPEKKSGIAHAVLV  254 (536)
Q Consensus       176 ~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~A-a~Y~~~~~~~~~~~~~ql  254 (536)
                      .++...|.+.|.|||+|||.||++|+.||.++..+.         ....+||||+||||++ .+|...   .++ .+..|
T Consensus       162 ~~~~d~~~r~aLKaf~Hta~yD~Aisd~frKQy~~g---------vsq~slRYg~npHQ~paql~~~q---~~l-p~~vl  228 (588)
T KOG2555         162 EISQDLRNRRALKAFEHTASYDAAISDYFRKQYSEG---------VSQLSLRYGMNPHQKPAQLYVVQ---GKL-PFKVL  228 (588)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHCCHHCCCCCCCCHHHHHHHC---CCC-CEEEE
T ss_conf             522237889999888877657789999999865314---------43233310789666745576645---787-44786


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCC-------------HHHH------HHHHHHHHCC
Q ss_conf             5898883122212001167764245-567279996156865654520-------------1689------9999985332
Q gi|254780664|r  255 QGKPLSYNNINDLDAAFELVSEFRS-QDCAACVIVKHMNPCGVATAD-------------TLVE------AYRRALSCDP  314 (536)
Q Consensus       255 ~GKeLSYNNllD~daA~~lv~ef~~-~~~Pa~vIvKH~NPCGvA~~~-------------~~~~------Ay~~A~~~DP  314 (536)
                      +| +++|+||+|++++|.||+||++ ...|+|+++||++|||+|+|-             ++.+      ||.+|+.+||
T Consensus       229 ~g-spgyiNl~DAln~w~lvkel~~~l~~paaasfKHvsPaGaAvg~pls~~e~kv~~v~Di~eltpla~AYarArgADr  307 (588)
T KOG2555         229 CG-SPGYINLLDALNSWPLVKELSENLGLPAAASFKHVSPAGAAVGLPLSDVEAKVYFVDDIYELTPLACAYARARGADR  307 (588)
T ss_pred             CC-CCCHHHHHHHHCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHEEEHHHHHHCCHHHHHHHHHHCCCC
T ss_conf             18-98534577664240454677761388600001023764110267665455320013435534668889998746774


Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCC
Q ss_conf             13200455542754214578788654311112687989998851245531563167667776664020321022310123
Q gi|254780664|r  315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRD  394 (536)
Q Consensus       315 ~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D  394 (536)
                      +|+||++||+|..||..||+.|++...+.||||+|++|||+||++|||..+.++.+.++|.+...|.|+++|++|.|.+|
T Consensus       308 mSsFGdfvAls~~vDv~tAriIsrevsDGviApgYepeaLeiL~KkK~g~yciLq~dpny~p~~~e~rqv~G~~L~Qkrn  387 (588)
T KOG2555         308 MSSFGDFVALSDVVDVVTARIISREVSDGVIAPGYEPEALEILSKKKNGKYCILQMDPNYVPGEVERRQVFGLTLQQKRN  387 (588)
T ss_pred             CCCCCCEEEEEEEHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECC
T ss_conf             12446747752001145676750156676435887878889974256885699970777674500133450277343147


Q ss_pred             CC-CCCCCC-CCCCCCCC-CHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-
Q ss_conf             34-531000-12467778-688988899999986005667799996893899729688889999999999876420012-
Q gi|254780664|r  395 NV-VDNKEL-TVVTKRSP-TDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQAD-  470 (536)
Q Consensus       395 ~~-~~~~~~-~vVT~~~p-t~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~-  470 (536)
                      +. ++..-| ++|+++++ ++..+.||.|||.++||+|||+|+++|||++||+|+||||||.|+|+|..||.+||+..+ 
T Consensus       388 da~i~~s~F~~vvsknk~l~e~a~~Dl~vAt~a~KytqSNsvcyAkng~vvGlGaGQqsRihctRlAgdkadnwwlr~hp  467 (588)
T KOG2555         388 DAVIDQSLFSNVVSKNKDLPESALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCTRLAGDKADNWWLRQHP  467 (588)
T ss_pred             CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCCCCEEEEECCCCCCCCHHHHCCC
T ss_conf             67510677877762389961677777789877665503461799708879961588755022210125543226665283


Q ss_pred             -------------------------------------------------------CCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             -------------------------------------------------------2223487099973668685558999
Q gi|254780664|r  471 -------------------------------------------------------VKSMTNGSVIASEAFYPFPDGIVEA  495 (536)
Q Consensus       471 -------------------------------------------------------~~~~~~g~vlaSDAFFPF~D~ie~a  495 (536)
                                                                             |-++++|.+++|||||||||+|+.|
T Consensus       468 ~vl~mkfkkgvkr~e~snaid~~v~g~~~e~~~~~~~~~~fe~~p~~~t~~e~~ewl~~l~~v~l~SDAFFPF~Dnv~ra  547 (588)
T KOG2555         468 KVLGMKFKKGVKRAEKSNAIDLYVTGTVGEDPELSQWESKFEEVPEPLTKEERKEWLEKLKGVSLSSDAFFPFPDNVYRA  547 (588)
T ss_pred             HHHHHHHHHCCCCHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHH
T ss_conf             45413565314614324633431035324684056666655416653476888999997118442245436671579999


Q ss_pred             HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             97199599938987798899999987597799747854479
Q gi|254780664|r  496 IKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH  536 (536)
Q Consensus       496 a~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H  536 (536)
                      .+.||++|..||||++|+.||++|+++||.|.+|..|||+|
T Consensus       548 ~qsGv~yiaaP~GSv~D~~v~~a~d~~~iv~~~t~lRlFhH  588 (588)
T KOG2555         548 VQSGVKYIAAPSGSVMDKVVIDACDEFGIVLAETNLRLFHH  588 (588)
T ss_pred             HHCCCEEEECCCCCCHHHHHHHHHHHHCEEEEECCHHHHCC
T ss_conf             86387288568875015799988876296888342442059


No 4  
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=100.00  E-value=0  Score=924.08  Aligned_cols=311  Identities=35%  Similarity=0.532  Sum_probs=276.5

Q ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCC
Q ss_conf             3333436788100650576047766821012105898883122212001167764245-567279996156865654520
Q gi|254780664|r  222 KKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRS-QDCAACVIVKHMNPCGVATAD  300 (536)
Q Consensus       222 ~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNNllD~daA~~lv~ef~~-~~~Pa~vIvKH~NPCGvA~~~  300 (536)
                      ...+|||||||||+|++|....   +...++|||||+ |||||+|+|+||+||+||.+ .+.||||||||+||||||++.
T Consensus         3 ~~~~LRYGENPHQ~aA~~~~~~---~~~~~~~l~Gk~-SYNN~lD~daA~~lv~ef~~~~~~Pa~viiKH~NPCGvA~~~   78 (391)
T PRK07106          3 NELELKYGCNPNQKPARIFIKE---GELPIEVLNGRP-GYINLLDALNSWQLVKELKEATGLPAAASFKHVSPAGAAVAV   78 (391)
T ss_pred             CCCCCCCCCCCCCCCCCEECCC---CCCCCEEECCCC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCC
T ss_conf             7787558888475320003468---866856666820-077899999999999975651599749999378767021066


Q ss_pred             H------------------HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCC
Q ss_conf             1------------------6899999985332132004555427542145787886543111126879899988512455
Q gi|254780664|r  301 T------------------LVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPS  362 (536)
Q Consensus       301 ~------------------~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKn  362 (536)
                      +                  +.+||.+|++|||+||||||||||++||.++|++|.+.|+||||||+|++||||||++|||
T Consensus        79 ~l~d~~~~~~~~~~~~~~~~~~Ay~~A~~~Dp~SAFGGIVa~N~~vd~~~A~~I~~~F~EvIIAP~f~~eAleiL~~KKn  158 (391)
T PRK07106         79 PLSDTLKKIYFVDDGELSPLATAYARARGADRMSSYGDFIALSDVCDEATARILNREVSDGIIAPGYTPEALEILKNKRK  158 (391)
T ss_pred             CCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf             41134543201244345539999999970798544687899847338999999998657641057889899999975112


Q ss_pred             CEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCC-CCCCCCC-CC-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             3156316766777666402032102231012334-5310001-24-6777868898889999998600566779999689
Q gi|254780664|r  363 MRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNV-VDNKELT-VV-TKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDG  439 (536)
Q Consensus       363 lRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~-~~~~~~~-vV-T~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~  439 (536)
                      +|++.+.....+.+..+++|++.||+|+|++|.. ++...|+ +| ++++|++++++||+|||+|||||||||||++||+
T Consensus       159 ~~l~il~~~~~~~~~~~~~r~i~Gg~L~Q~~d~~~~~~~~~~~~v~~~k~~~~e~~~dL~FAwkv~K~vKSNAIVlakn~  238 (391)
T PRK07106        159 GTYNIIKIDPAYRPAPIEHKEVFGITFEQGRNETKIDESLLKNIPTKNKILPDEAKRDLIIALITLKYTQSNSVCYAKDG  238 (391)
T ss_pred             CCEEEEECCCCCCCCCCEEEEEECEEEEECCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             56688754765677872599981607997578543686660360014899998999999999999976456639999689


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-------------------------------------------------
Q ss_conf             3899729688889999999999876420012-------------------------------------------------
Q gi|254780664|r  440 RTVGIGSGQTSRVDSTRFAAIKAHNISAQAD-------------------------------------------------  470 (536)
Q Consensus       440 ~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~-------------------------------------------------  470 (536)
                      +|||||+||||||||++||++||+.|+++.+                                                 
T Consensus       239 ~tiGIGaGQ~SRVDsv~iA~~KA~~~~~r~~p~~~~l~~~~~~~~~e~~n~~~~~~~~d~~~~~~~~~~~~~f~~~~~~l  318 (391)
T PRK07106        239 QAIGIGAGQQSRIHCTRLAGNKADIWYLRQHPKVLNLPFKEGIRRPDRDNTIDVYISDDYMDVLADGVWEQFFTRKPEPL  318 (391)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             28986788646899999999999998764265652430332000133334788874011001244556665420365300


Q ss_pred             -------CCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             -------222348709997366868555899997199599938987798899999987597799747854479
Q gi|254780664|r  471 -------VKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH  536 (536)
Q Consensus       471 -------~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H  536 (536)
                             +...++|+||||||||||+||||.|+++||++||||||||||+|||++|||+||+|+|||.|||||
T Consensus       319 ~~~e~~~~~~~~~g~vlASDAFFPF~D~Ie~aa~~GV~aIiQPGGSirD~eVI~aane~gi~MvfTG~RhF~H  391 (391)
T PRK07106        319 TREEKRAWLDTLKGVALGSDAFFPFGDNIERAHKSGVSYIAQPGGSIRDDHVIETCDKYNITMAFTGIRLFHH  391 (391)
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             0777776650258808991157887568999998599499879974150999999998698899868766188


No 5  
>pfam01808 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase EC:2.1.2.3 (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=100.00  E-value=0  Score=906.13  Aligned_cols=312  Identities=52%  Similarity=0.794  Sum_probs=294.2

Q ss_pred             HHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHCCCCCCC
Q ss_conf             740156313530899989889875302345666788999999999874228999987533101-2113443210123333
Q gi|254780664|r  147 AAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAES-ENFPDYLNITAVKKQE  225 (536)
Q Consensus       147 AAKN~~~V~Vi~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~-~~~p~~~~~~~~~~~~  225 (536)
                      |||||++|+|||||+||+.++++|+. +|+++++||++||.|||+|||+||++|++||+++.+ +.+|+.+.+++.+.++
T Consensus         1 AAKN~~~V~Vv~dp~dY~~vi~el~~-~g~~s~~~R~~lA~kAF~~Ta~YD~~Is~yl~~~~~~~~~~~~~~~~~~k~~~   79 (315)
T pfam01808         1 AAKNHKRVTIVVDPADYSAVLAELKK-EGSLTLQTRRRLALKAFEHTAAYDAAIADYFRKQYSPKHPERTFTLPGVRKQS   79 (315)
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCC
T ss_conf             97789986999998999999999986-69999999999999999999999999999986442665761331005522357


Q ss_pred             CCCCCCCCCCCEEEECCC-CCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHH
Q ss_conf             436788100650576047-7668210121058988831222120011677642455672799961568656545201689
Q gi|254780664|r  226 MRYGENPHQKAALYSTPE-KKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVE  304 (536)
Q Consensus       226 LRYGENPHQ~Aa~Y~~~~-~~~~~~~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~  304 (536)
                      |||||||||+|++|.+.. ...++.+++||||||||||||+|+|+||+||+||.+  .|+||||||+||||||+++++.+
T Consensus        80 LRYGENPHQ~Aa~Y~~~~~~~~~~~~~~qL~GKeLSYNNilD~daA~~lv~ef~~--~Pa~vIiKH~NPCGvA~~~~~~~  157 (315)
T pfam01808        80 LRYGENPHQQAAFYVDPTQKEGSIAPAEQLHGKEMSYNNLLDADAAWRLVKEFEN--QPAAAIVKHANPCGVAVGPSIAE  157 (315)
T ss_pred             CCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCC--CCEEEEEECCCCCEECCCCCHHH
T ss_conf             7478880451258456687766641236426887884537657899724753589--97599994388862127989999


Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCC
Q ss_conf             99999853321320045554275421457878865431111268798999885124553156316766777666402032
Q gi|254780664|r  305 AYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTV  384 (536)
Q Consensus       305 Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi  384 (536)
                      ||++||+|||+||||||||||++||.++|++|.+.|+||||||+|++|||+||++|||+|+|++.....+ .+.+++|+|
T Consensus       158 Ay~~A~~~Dp~SAFGGIva~N~~vd~~~A~~i~~~F~EvIiAP~f~~eAl~iL~~KknlRvl~~~~~~~~-~~~~~~rsv  236 (315)
T pfam01808       158 AYARAREADPMSAFGGIIALNDEVDVETAKEISEEFSEVIIAPGYEPEALEVLSRKKNLRVLVLQEDPAY-VPELELRQV  236 (315)
T ss_pred             HHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCCC-CCCEEEEEE
T ss_conf             9999986087344586898657000889999998667642067899899999974887179963677666-786169996


Q ss_pred             CHHHHHCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             102231012334-531000124677786889888999999860056677999968938997296888899999999998
Q gi|254780664|r  385 SGGILVQTRDNV-VDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKA  462 (536)
Q Consensus       385 ~GG~LvQ~~D~~-~~~~~~~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA  462 (536)
                      .||+|+|++|.. ++..+|++||+++|+++||+||+|||+|||||||||||++||++|||||+||||||||++||++||
T Consensus       237 ~GG~LvQ~~d~~~~~~~~~kvVT~~~pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~sRVds~~iA~~KA  315 (315)
T pfam01808       237 SGGLLIQDRDDGGVDDSEFSVVTKRKPTEQELEDLLFAWKVVKHVKSNAIVYAKNGMTVGIGAGQQSRVHSARLAGDKA  315 (315)
T ss_pred             ECCEEEECCCCCCCCHHHCEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             0667887676676888885351688999999999999999997778567999939938986899763999999999629


No 6  
>TIGR00355 purH bifunctional purine biosynthesis protein PurH; InterPro: IPR002695   This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate . The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP .; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process.
Probab=100.00  E-value=0  Score=896.04  Aligned_cols=520  Identities=53%  Similarity=0.835  Sum_probs=495.8

Q ss_pred             EEEEEEEECCCCHHHHHHHHH-HCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf             698998754568699999999-8799999942768999988995179465348816519855323715553553308898
Q gi|254780664|r   17 KTALISVHNKTGVVEFASRLL-SRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNP   95 (536)
Q Consensus        17 krALiSV~dKtgl~~la~~L~-~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~   95 (536)
                      ++||+||+||+|+++|++.|. +.|+++++||||++.|+++|+|+++|+++|||||+++||||||||++|||||++|+.+
T Consensus         1 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~gg~~~~~~~~g~p~~~~~~~~g~p~~~~g~~~~~~p~~~gg~~~~~~~~   80 (569)
T TIGR00355         1 KRALLSVSDKTGLVELAQGLVNEKGVELLSTGGTAKLLAEAGLPVTEVSDYTGFPELLGGRVKTLHPKVHGGILARRGDD   80 (569)
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCHHHHHCCCCHHHCCCHHCCCCCCCCCEEECCCCC
T ss_conf             94123112211137888876543131333156424667641786000011116502315620000410104311015762


Q ss_pred             HHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCC
Q ss_conf             99999997799841499994888899731765-31123200233434699987401563135308999898898753023
Q gi|254780664|r   96 AHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNN  174 (536)
Q Consensus        96 ~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~~  174 (536)
                      +|..+++++++.++|+|+||||||++++.++. +..+.+|+||||||+|+|+++|||.+++++++|.||..++.++..++
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~d~ggp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (569)
T TIGR00355        81 EDDADLEEHGIEPLDLVVVNLYPFKETVAKPGVTLPEAVENIDIGGPTLLRAAAKNHADVTVLVDPKDYSAFLSELDENE  160 (569)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC
T ss_conf             34567765057632167762120034430156623454542036741344433203241368745402578998764213


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHCCCCCCCCCCCCCCCCC-CEEEECCC
Q ss_conf             45666788999999999874228999987533101----------21134432101233334367881006-50576047
Q gi|254780664|r  175 GKIPYNFRKKMARQAFSRTASYDTAICRWLANAES----------ENFPDYLNITAVKKQEMRYGENPHQK-AALYSTPE  243 (536)
Q Consensus       175 g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~----------~~~p~~~~~~~~~~~~LRYGENPHQ~-Aa~Y~~~~  243 (536)
                      |.+++..|+.++.++|.||+.||.+|++||.+...          ..||..+.+.+.+.+.|||||||||+ +.+|....
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~  240 (569)
T TIGR00355       161 GELSLALRFDLALKAFEHTAAYDAAIADYFGGLVGPYHGEEKEKCGRFPRTFGLGFTKKQPLRYGENPHQKPAGFYVTGN  240 (569)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             53025677777777776544677889987642033201200244201123412220112122116775433034443210


Q ss_pred             CCCC-CCCHHHCCCCCCCCCCCCCCCHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCHHHH-----------------
Q ss_conf             7668-2101210589888312221200116776424-55672799961568656545201689-----------------
Q gi|254780664|r  244 KKSG-IAHAVLVQGKPLSYNNINDLDAAFELVSEFR-SQDCAACVIVKHMNPCGVATADTLVE-----------------  304 (536)
Q Consensus       244 ~~~~-~~~~~ql~GKeLSYNNllD~daA~~lv~ef~-~~~~Pa~vIvKH~NPCGvA~~~~~~~-----------------  304 (536)
                      ...+ ++.+++++||+++|||+.|++++|.++.+|. ....|+|+++||.||||++++.++.+                 
T Consensus       241 ~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~p~g~~~g~~~~~~~~~~~~~~~~~~~~p~  320 (569)
T TIGR00355       241 DKEGSVATAEQLQGKELSYNNLLDADAALPLVKEFDASLNEPAAVIVKHANPCGVALGKTLLDVEKQVYFVADIENLSPL  320 (569)
T ss_pred             HCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHEEEEECCCCCCHH
T ss_conf             00001344444304443201234446678888765431034202110014521100042134432220011000011035


Q ss_pred             --HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH-HHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEE
Q ss_conf             --9999985332132004555427542145787886-5431111268798999885124553156316766777666402
Q gi|254780664|r  305 --AYRRALSCDPISAFGGIIAFNREVDQEVAKEVIK-VFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVL  381 (536)
Q Consensus       305 --Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~-~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~  381 (536)
                        +|.+|+.+||.|+|||++++|+++|..+|+.+.+ .|.|+++||++++++++++++|+|+|++.+..+..+.+...++
T Consensus       321 ~c~~~~~~~~d~~~~~gg~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (569)
T TIGR00355       321 ACAYDRAFGADPTSAFGGIIALNRELDGPTAKALVKREFLEGIIAPGYSPEALEILAKKKNLRLLTLGDWANGVPELDEL  400 (569)
T ss_pred             HHHHHHHHCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
T ss_conf             67666540344201101111101110035788877544432101267656789988641374178833532223014556


Q ss_pred             CCCCHHHHHCCCCC-CCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHH
Q ss_conf             03210223101233-45310001-2467-778688988899999986005667799996893899729688889999999
Q gi|254780664|r  382 KTVSGGILVQTRDN-VVDNKELT-VVTK-RSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFA  458 (536)
Q Consensus       382 rsi~GG~LvQ~~D~-~~~~~~~~-vVT~-~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA  458 (536)
                      +.+.||+|+|+.|. ..+..+|+ ++++ ++|+++++.|+.|+|+++||++||+|++++++.++|+|+||++|+.++++|
T Consensus       401 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~g~g~~~~~~~~~~~  480 (569)
T TIGR00355       401 KRVNGGLLVQDRDDGGVDPSTLKEVVTKNKQPTEQELADLLFAWKVAKHVKSNAIVYAKNNLTVGLGAGQLSRVGSAKLA  480 (569)
T ss_pred             HHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHH
T ss_conf             55422110111210114645677765225673367888888888887542024047640660553045410001122332


Q ss_pred             HHHHHHHHHCCCCC---------CCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEE--CCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             99987642001222---------234870999736686855589999719959993--8987798899999987597799
Q gi|254780664|r  459 AIKAHNISAQADVK---------SMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQ--PGGSVRDSEAITVADQHGIAMV  527 (536)
Q Consensus       459 ~~KA~~~~~~~~~~---------~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiq--PGGSirD~evI~aan~~gi~m~  527 (536)
                      +.++.+||+..++.         ....|+.+++|+||||+|+++.++..|+++++|  |||++||++.+.+++++++.|+
T Consensus       481 ~~~~~~ww~~~~p~~~~~~w~~g~~~~g~~~~~d~~~p~~~~~~~~~~~g~~~~~~~~pgg~~~~~~~~~~~~~~~~~~~  560 (569)
T TIGR00355       481 GDKADNWWFRQHPRVLEIKWDEGLEAPGSSLASDAFFPFPDGVEEAAAAGVTCVIQEIPGGSLRDEDSIWAADEHGLALV  560 (569)
T ss_pred             HHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEEEE
T ss_conf             11110002112772256421224321100110002003554400244431232222237887640356655544040001


Q ss_pred             ECCCCCCCC
Q ss_conf             747854479
Q gi|254780664|r  528 FTGIRHFRH  536 (536)
Q Consensus       528 fTg~RhF~H  536 (536)
                      |||.|||+|
T Consensus       561 ~~~~~~~~~  569 (569)
T TIGR00355       561 FTGLRHFPH  569 (569)
T ss_pred             ECCHHCCCC
T ss_conf             001010379


No 7  
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=100.00  E-value=0  Score=894.65  Aligned_cols=310  Identities=58%  Similarity=0.905  Sum_probs=298.4

Q ss_pred             HHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
Q ss_conf             74015631353089998988987530234566678899999999987422899998753310121134432101233334
Q gi|254780664|r  147 AAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEM  226 (536)
Q Consensus       147 AAKN~~~V~Vi~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~L  226 (536)
                      |||||++|+|||||+||+.++++|++ +|++|++||++||.|||+|||.||++|++||++...+.+|+.+.+++++.++|
T Consensus         1 AAKN~~~V~Vi~dp~dY~~~~~el~~-~g~~s~~~R~~lA~kAF~~Ta~YD~~I~~yl~~~~~~~~p~~~~~~~~~~~~L   79 (311)
T smart00798        1 AAKNHKDVTVVVDPADYAEVLEELKA-GGGLSLETRKRLAAKAFAHTAAYDAAISNYLAKQLASEFPETLTLSFEKKQDL   79 (311)
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCC
T ss_conf             97889987999998999999999996-69989999999999999999999999999983205555870067734303477


Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             36788100650576047766821012105898883122212001167764245567279996156865654520168999
Q gi|254780664|r  227 RYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAY  306 (536)
Q Consensus       227 RYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay  306 (536)
                      ||||||||+|++|.+.....++..++||||||||||||||+|+||+||.||.+   |+||||||+||||||+++++.+||
T Consensus        80 RYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~~---pa~~IiKH~nPCGvA~~~~~~~A~  156 (311)
T smart00798       80 RYGENPHQKAAFYTDPDALGGIATAKQLQGKELSYNNILDADAALELVKEFDE---PACVIVKHANPCGVAVGDTLAEAY  156 (311)
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCC---CEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             57888221314305688666654435605887785567768999999862688---748998248876412450699999


Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCH
Q ss_conf             99985332132004555427542145787886543111126879899988512455315631676677766640203210
Q gi|254780664|r  307 RRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSG  386 (536)
Q Consensus       307 ~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~G  386 (536)
                      ++|++|||+||||||||+|++||.++|++|.+.|+||||||+|++|||++|++|||+|||++....  ..+.+++|++.|
T Consensus       157 ~~A~~~Dp~SAFGGIva~N~~vd~~~A~~i~~~F~EvIiAP~f~~eAl~iL~~KknlRil~~~~~~--~~~~~~~rsi~g  234 (311)
T smart00798      157 RKAYAADPVSAFGGIIAFNRPVDEETAEAINKIFLEVIIAPDFDEEALEILSKKKNLRLLELGPLP--DPDGLEFKSVSG  234 (311)
T ss_pred             HHHHHCCCCCCCCCEEEECCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCC--CCCCEEEEEEEC
T ss_conf             998702985445877886462179999999999987711778998999999748865999668877--788714899957


Q ss_pred             HHHHCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             2231012334-531000124677786889888999999860056677999968938997296888899999999998
Q gi|254780664|r  387 GILVQTRDNV-VDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKA  462 (536)
Q Consensus       387 G~LvQ~~D~~-~~~~~~~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA  462 (536)
                      |+|+|++|.. ++..+|++||+++|++++|+||+|||+|||||||||||++||++|||||+||||||||++||++||
T Consensus       235 G~L~Q~~d~~~~~~~~~~~Vt~~~p~~~~~~dl~Fa~~v~k~vkSNaIv~ak~~~tvGiGaGQ~sRvda~~~A~~kA  311 (311)
T smart00798      235 GLLVQDRDNGGIDPEDLKVVTKRQPTEEELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKA  311 (311)
T ss_pred             EEEEECCCCCCCCHHHCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             19997267788998997880799989999999999999997677857999958907986898555999999999609


No 8  
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=100.00  E-value=0  Score=606.62  Aligned_cols=186  Identities=58%  Similarity=0.914  Sum_probs=181.9

Q ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHH
Q ss_conf             69899875456869999999987999999427689999889951794653488165198553237155535533088989
Q gi|254780664|r   17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPA   96 (536)
Q Consensus        17 krALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~   96 (536)
                      |||||||||||||++||+.|.++||+|+|||||+++|+++|++|++||++||||||||||||||||+||||||+||++++
T Consensus         1 krALISVsdKt~l~~la~~L~~~g~~IisTgGT~~~L~~~gi~v~~Vs~~TgfpEil~GRVKTLHPkI~gGIL~~r~~~~   80 (187)
T cd01421           1 KRALISVSDKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNEE   80 (187)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEHHHHCCCHHHHCCCCCCCCCHHHHHHCCCCCCHH
T ss_conf             90799864532779999999988988997808999998668860669873197377589765357055440215666635


Q ss_pred             HHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCC
Q ss_conf             9999997799841499994888899731765-311232002334346999874015631353089998988987530234
Q gi|254780664|r   97 HMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNG  175 (536)
Q Consensus        97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~~g  175 (536)
                      |+ ++++++|++|||||||||||++++++++ +++++|||||||||||||||||||++|+|+|||+||+.++++|+.+ |
T Consensus        81 h~-~~~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~~IEnIDIGGpsliRAAAKN~~~V~v~~dp~dY~~~i~~l~~~-g  158 (187)
T cd01421          81 HK-DLEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELKSN-G  158 (187)
T ss_pred             HH-HHHHCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC-C
T ss_conf             89-999869997027998465777775558999899998446774899999982688128767999999999999976-9


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56667889999999998742289999875
Q gi|254780664|r  176 KIPYNFRKKMARQAFSRTASYDTAICRWL  204 (536)
Q Consensus       176 ~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l  204 (536)
                      ++++++|++||.|||.+||+||++|++||
T Consensus       159 ~~~~~~R~~lA~kAF~~ta~YD~~I~~~L  187 (187)
T cd01421         159 SISEETRRRLALKAFAHTAEYDAAISNYL  187 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999999639


No 9  
>pfam02142 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site.
Probab=99.52  E-value=2.5e-14  Score=124.70  Aligned_cols=92  Identities=39%  Similarity=0.599  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             86999999998799999942768999988995179465348816519855323715553553308898999999977998
Q gi|254780664|r   28 GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELE  107 (536)
Q Consensus        28 gl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~  107 (536)
                      ||+++|+.|.++||+|+||+||+++|+++||++ ++.+.+++| +++||+                  +....+++.   
T Consensus         1 ~iv~~a~~L~~lGf~i~AT~GTa~~L~~~Gi~~-~~v~k~~~~-~~~~~~------------------~i~d~i~~~---   57 (92)
T pfam02142         1 GLVELAKALVELGFKLYATGGTAKFLKEAGIPT-EVVNKTGEG-RPGGRV------------------QIGDLIKNG---   57 (92)
T ss_pred             CHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCC-EEEEECCCC-CCCCCH------------------HHHHHHHCC---
T ss_conf             968999999988999998838999999559981-686340689-999847------------------699999829---


Q ss_pred             CEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHH
Q ss_conf             41499994888899731765311232002334346
Q gi|254780664|r  108 SIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPS  142 (536)
Q Consensus       108 ~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGps  142 (536)
                      .|||||+++|||++++.++.....+.+++||+++|
T Consensus        58 ~IdlVInt~~~~~~~~~dg~~iRr~a~~~~Ip~~T   92 (92)
T pfam02142        58 EIDLVINTLYPFKATVHDGYAIRRAAENIDIPLPT   92 (92)
T ss_pred             CCCEEEECCCCCCEECCCCHHHHHHHHHCCCCCCC
T ss_conf             95199983898851125887899999926998549


No 10 
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=99.44  E-value=2.7e-13  Score=117.24  Aligned_cols=89  Identities=44%  Similarity=0.723  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf             86999999998799999942768999988995179465348816519855323715553553308898999999977998
Q gi|254780664|r   28 GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELE  107 (536)
Q Consensus        28 gl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~  107 (536)
                      +++++|+.|.++||+|+||+||+++|+++||+|                 |||||++++|++       +  .++.....
T Consensus         1 ~~~~~ak~l~~lGf~l~AT~GTa~~L~~~Gi~v-----------------~~l~~ki~~g~~-------~--i~~~i~~~   54 (90)
T smart00851        1 GLVELAKRLAELGFELVATGGTAKFLREAGLPV-----------------KTLHPKVHGGIL-------A--ILDLIKNG   54 (90)
T ss_pred             CHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCC-----------------EEEECCCCCCCC-------C--HHHHHCCC
T ss_conf             968999999988998998125899999759971-----------------043024435610-------4--89981978


Q ss_pred             CEEEEEEECCCHHHHHCC-CCCHHHHHHCCCCCCHH
Q ss_conf             414999948888997317-65311232002334346
Q gi|254780664|r  108 SIDLVVVNLYPFEESFCR-EDDYYTMVENIDIGGPS  142 (536)
Q Consensus       108 ~IDlVvvNLYPF~~~v~~-~~~~~~~IEnIDIGGps  142 (536)
                      .|||||+++|||.+...+ +.....+.+++||+++|
T Consensus        55 ~IdlVInt~~~~~~~~~~d~~~iRr~a~~~~Ip~~T   90 (90)
T smart00851       55 EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT   90 (90)
T ss_pred             CEEEEEEECCCCCCHHHHCCCCHHHHHHCCCCCCCC
T ss_conf             879999846876323653588899998808988709


No 11 
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=99.05  E-value=1.5e-09  Score=89.90  Aligned_cols=106  Identities=26%  Similarity=0.372  Sum_probs=79.2

Q ss_pred             EEEEEE--CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHH
Q ss_conf             899875--456869999999987999999427689999889951794653488165198553237155535533088989
Q gi|254780664|r   19 ALISVH--NKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPA   96 (536)
Q Consensus        19 ALiSV~--dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~   96 (536)
                      .||||.  ||..++++|+.|.++||+|++|+||+++|+++||+|+.|..+...          -+|.|..-|+.+     
T Consensus         2 VfiSv~D~DK~~~i~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~V~Ki~e~----------g~p~v~d~i~~~-----   66 (112)
T cd00532           2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHED----------GEPTVDAAIAEK-----   66 (112)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCEEEEEEECCCC----------CCCCHHHHHHCC-----
T ss_conf             89998657566899999999988999998868999999879834898504878----------998899998668-----


Q ss_pred             HHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHH
Q ss_conf             9999997799841499994888899731765311232002334346999874015631353089998
Q gi|254780664|r   97 HMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDY  163 (536)
Q Consensus        97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY  163 (536)
                                ..|||||-...|....            ..+..|-.+-|+|-.+  +|.++|..+-.
T Consensus        67 ----------g~I~lVINt~~~~~~~------------~~~~Dg~~IRr~Av~~--~IP~~Ttl~~A  109 (112)
T cd00532          67 ----------GKFDVVINLRDPRRDR------------CTDEDGTALLRLARLY--KIPVTTPNATA  109 (112)
T ss_pred             ----------CCEEEEEECCCCCCCC------------CCCCCHHHHHHHHHHC--CCCEECCHHHH
T ss_conf             ----------9679999888888773------------3245489999999976--99988448986


No 12 
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.63  E-value=4.2e-08  Score=79.44  Aligned_cols=106  Identities=36%  Similarity=0.500  Sum_probs=71.8

Q ss_pred             EEEEEEE--CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf             9899875--45686999999998799999942768999988995179465348816519855323715553553308898
Q gi|254780664|r   18 TALISVH--NKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNP   95 (536)
Q Consensus        18 rALiSV~--dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~   95 (536)
                      +.|+||.  ||..++++|+.|.++||+|++|.||+++|+++||+++.|..+..      |     .|.|           
T Consensus         2 ~Vl~Sv~d~dK~e~l~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~k~~e------~-----~p~i-----------   59 (110)
T cd01424           2 TVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSE------G-----RPNI-----------   59 (110)
T ss_pred             EEEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCEEEECCCC------C-----CCCH-----------
T ss_conf             69999866547689999999998899999871699999864986403300567------9-----9768-----------


Q ss_pred             HHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHH
Q ss_conf             999999977998414999948888997317653112320023343469998740156313530899989889
Q gi|254780664|r   96 AHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFL  167 (536)
Q Consensus        96 ~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~  167 (536)
                         .++=+.  ..||||| |. |-.     ...    ++  |  |-.|=|+|..  ..|.++|+.+--..++
T Consensus        60 ---~d~i~~--~~i~lVI-Nt-~~~-----~~~----~~--d--g~~IRr~Av~--~~Ip~~Tsi~~A~a~v  109 (110)
T cd01424          60 ---VDLIKN--GEIQLVI-NT-PSG-----KRA----IR--D--GFSIRRAALE--YKVPYFTTLDTARAAV  109 (110)
T ss_pred             ---HHHHHC--CCEEEEE-EC-CCC-----CCC----CC--C--HHHHHHHHHH--CCCCEEECHHHHHHHH
T ss_conf             ---999977--9358999-77-889-----865----74--2--9999999997--6999996699999873


No 13 
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=98.63  E-value=1.1e-07  Score=76.29  Aligned_cols=112  Identities=35%  Similarity=0.497  Sum_probs=73.5

Q ss_pred             EEEEEEEEC--CCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             698998754--568699999999879999994276899998899517946534881651985532371555355330889
Q gi|254780664|r   17 KTALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDN   94 (536)
Q Consensus        17 krALiSV~d--Ktgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~   94 (536)
                      |..||||.|  |.-+.++|+.|.++||+|++|.||+++|+++||+|+.|..+...+  -+|+     |.+          
T Consensus         1 KnVliSv~d~dK~~~l~~a~~l~~lGf~l~AT~GTa~~l~~~Gi~~~~v~k~~e~~--~~~~-----p~i----------   63 (116)
T cd01423           1 KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEP--QNDK-----PSL----------   63 (116)
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCEEEEEECCCC--CCCC-----CCH----------
T ss_conf             92999940203899999999999879999984189999998699657987862467--8999-----669----------


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHH
Q ss_conf             899999997799841499994888899731765311232002334346999874015631353089998988
Q gi|254780664|r   95 PAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLF  166 (536)
Q Consensus        95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~  166 (536)
                         ..-+++   ..||||| |+--     .....      ..| -| -.||.+|=. ..|..+|+++-=..+
T Consensus        64 ---~d~i~~---g~i~lVI-Ntp~-----~~~~~------~~~-~g-~~iRr~Av~-~~Ip~~T~~~~A~~~  114 (116)
T cd01423          64 ---RELLAE---GKIDLVI-NLPS-----NRGKR------VLD-ND-YVMRRAADD-FAVPLITNPKCAKLF  114 (116)
T ss_pred             ---HHHHHC---CCEEEEE-ECCC-----CCCCC------CCC-CC-HHHHHHHHH-CCCCEEECHHHHHHH
T ss_conf             ---999976---9868999-8889-----99864------335-45-899999997-599989779999987


No 14 
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.44  E-value=5.9e-06  Score=63.88  Aligned_cols=66  Identities=23%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCEEEECCCCCC-------------CCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             436788100650576047766-------------8210121058988831222120011677642455672799961568
Q gi|254780664|r  226 MRYGENPHQKAALYSTPEKKS-------------GIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMN  292 (536)
Q Consensus       226 LRYGENPHQ~Aa~Y~~~~~~~-------------~~~~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~N  292 (536)
                      --=||=|-+...+|+.-+...             |-...++-||-|--|       .+..++..+.+.+.  -+|+=-.|
T Consensus       526 TcAgEF~a~T~Y~YSTY~~e~e~~~~~~~kvlvlGsGp~rIGqgiEFDY-------~~v~a~~alk~~G~--~~imIN~N  596 (1063)
T PRK05294        526 TCAAEFEADTPYMYSTYEEECESNPSDRKKVMILGGGPNRIGQGIEFDY-------CCVHAALALREAGY--ETIMVNCN  596 (1063)
T ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHH-------HHHHHHHHHHHCCC--EEEEECCC
T ss_conf             6323456678726764577777677788637996577732044423006-------79999999996598--15895378


Q ss_pred             CCCCCCCC
Q ss_conf             65654520
Q gi|254780664|r  293 PCGVATAD  300 (536)
Q Consensus       293 PCGvA~~~  300 (536)
                      |--|++.-
T Consensus       597 PETVSTD~  604 (1063)
T PRK05294        597 PETVSTDY  604 (1063)
T ss_pred             CCCCCCCC
T ss_conf             11111565


No 15 
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.41  E-value=7.2e-06  Score=63.23  Aligned_cols=13  Identities=38%  Similarity=0.424  Sum_probs=6.0

Q ss_pred             EECCCCCCCCCCC
Q ss_conf             9615686565452
Q gi|254780664|r  287 IVKHMNPCGVATA  299 (536)
Q Consensus       287 IvKH~NPCGvA~~  299 (536)
                      |+=-+||--|++.
T Consensus       592 ImiN~NPETVSTD  604 (1068)
T PRK12815        592 IMINNNPETVSTD  604 (1068)
T ss_pred             EEECCCCCCCCCC
T ss_conf             9962784312367


No 16 
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=97.57  E-value=9e-05  Score=55.25  Aligned_cols=130  Identities=25%  Similarity=0.371  Sum_probs=85.9

Q ss_pred             CCCCEE-EEEEEE--ECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHH
Q ss_conf             776136-989987--54568699999999879999994276899998899517946534881651985532371555355
Q gi|254780664|r   12 GEIAVK-TALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGI   88 (536)
Q Consensus        12 ~~~~ik-rALiSV--~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggI   88 (536)
                      ..+|-| ..|++|  .||+.+.++++.|.+.||+|++|.||+++|.++||+++-|-.++.-+      ++-=-       
T Consensus       957 ~~~p~kg~~~~~~~d~dk~~~~~~a~~L~~~G~~~yat~gT~~~L~e~gi~~~~v~~~~e~~------~~~~C------- 1023 (1089)
T TIGR01369       957 NRIPKKGSVLLSVRDKDKEELLDLAKKLAEKGYKIYATEGTAKFLEEAGIKAEVVLKVSEGR------EDDDC------- 1023 (1089)
T ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCHHHEEEECCCC------CCCCC-------
T ss_conf             70578877999803443457999999998637378850202676765187633200003788------78888-------


Q ss_pred             HHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHH
Q ss_conf             33088989999999779984149999488889973176531123200233434699987401563135308999898898
Q gi|254780664|r   89 LSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLA  168 (536)
Q Consensus        89 L~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~  168 (536)
                         ..+|+=++.+++   ..|+|||--.++=.+-+.        ...-+=-|=.+-|.|.+  .+|.++++++--..+++
T Consensus      1024 ---~~~p~~~~~~~~---~~~~~vIN~~~~~~~~~~--------~~~~~~~gy~iRR~A~~--~~vp~~t~~~~~~~~~~ 1087 (1089)
T TIGR01369      1024 ---EAQPNILELIKN---GEIELVINLTSKGKEGVL--------LRETATDGYKIRREAVD--YGVPLITTLETAEAFLE 1087 (1089)
T ss_pred             ---CCCHHHHHHHHH---CCCEEEEECCCCCCCCEE--------ECCCCCHHHHHHHHHHH--CCCCEEECHHHHHHHHH
T ss_conf             ---887158999970---880699965788866312--------20245445899999996--49977865689999998


Q ss_pred             HH
Q ss_conf             75
Q gi|254780664|r  169 EM  170 (536)
Q Consensus       169 el  170 (536)
                      .|
T Consensus      1088 al 1089 (1089)
T TIGR01369      1088 AL 1089 (1089)
T ss_pred             HC
T ss_conf             09


No 17 
>pfam06230 DUF1009 Protein of unknown function (DUF1009). Family of uncharacterized bacterial proteins.
Probab=97.25  E-value=0.0071  Score=41.46  Aligned_cols=113  Identities=25%  Similarity=0.433  Sum_probs=84.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             1246777868898889999998600566779---9996893899729688889999999999876420012222348709
Q gi|254780664|r  403 TVVTKRSPTDQELRDMKFAFKVVKHVKSNAV---VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSV  479 (536)
Q Consensus       403 ~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAI---v~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~v  479 (536)
                      .+.|.++|+++++.|..|+|++++..-+=-|   |+++++..+++=+=     .-+.-.+.|+++....       +|+|
T Consensus        83 G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVV~~g~VlavEa~-----EGTD~mI~R~~~l~~~-------~~~v  150 (212)
T pfam06230        83 GVLTRRAPDKSELADIARGAEVAKALGALDIGQAVVVKDGAVLAVEAI-----EGTDAMLRRVGELRRG-------RGGV  150 (212)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECC-----CCHHHHHHHHHHHCCC-------CCEE
T ss_conf             752578989899999999999999973468741699989989999553-----0689999999974568-------8808


Q ss_pred             EE------ECCCCCCC----CHHHHHHHCCCCEE-EECCCCC--CHHHHHHHHHHCCCEEE
Q ss_conf             99------73668685----55899997199599-9389877--98899999987597799
Q gi|254780664|r  480 IA------SEAFYPFP----DGIVEAIKAGVTAV-IQPGGSV--RDSEAITVADQHGIAMV  527 (536)
Q Consensus       480 la------SDAFFPF~----D~ie~aa~~Gi~aI-iqPGGSi--rD~evI~aan~~gi~m~  527 (536)
                      +.      -|=-|-+|    +.|+.++++|.+.| ++.|.++  .-+++|+.||++||..+
T Consensus       151 lvK~~K~~QD~R~DlPtIG~~Ti~~~~~ag~~giavea~~~li~d~~~~i~~A~~~~i~i~  211 (212)
T pfam06230       151 LVKAPKPGQDLRFDLPTIGPDTIETAAEAGLAGIAVEAGKTLVLDREAVIAAADAAGLFVV  211 (212)
T ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCCEEE
T ss_conf             9857787863124777748999999998399599996698799869999999998398995


No 18 
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=92.78  E-value=0.66  Score=27.15  Aligned_cols=126  Identities=21%  Similarity=0.349  Sum_probs=64.4

Q ss_pred             EEEEEECCC--CHHHHHHHHHHCCCE-EEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHHCC
Q ss_conf             899875456--869999999987999-99942768999988-995179465348816519--855323715553553308
Q gi|254780664|r   19 ALISVHNKT--GVVEFASRLLSRGIK-IISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        19 ALiSV~dKt--gl~~la~~L~~~g~~-iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~~r   92 (536)
                      +=+.|++.+  .-++.|+.|.+.|++ |||.|||+.+|+++ .+||.++. +|+|. ||.  =+.|..+++|  |+..-+
T Consensus         9 ~~i~v~~~~l~~av~~a~~~~~~g~dvIIsRGgta~~ir~~~~iPVv~I~-~s~~D-il~al~~a~~~~~ki--avvg~~   84 (169)
T pfam06506         9 ADVEVVDGGLEDAVEVARALVAEGVDVIISRGGTAAYLRDRLSVPVVEIK-VSGFD-LLRALARARRYGGRI--GLVGYE   84 (169)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEEE-CCHHH-HHHHHHHHHHHCCCE--EEEECC
T ss_conf             72799977789999999999977995999896589999985899889982-78869-999999999758979--999276


Q ss_pred             CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCH-HHHHHCCCCCCHHHHHHHHCCC
Q ss_conf             8989999999779984149999488889973176531-1232002334346999874015
Q gi|254780664|r   93 DNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDY-YTMVENIDIGGPSMIRAAAKNH  151 (536)
Q Consensus        93 ~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~-~~~IEnIDIGGpsmiRAAAKN~  151 (536)
                      +.-...+.+.++  -.+|+......--++.-..=... ++-+ .+=|||..-.+.|.|.-
T Consensus        85 ~~~~~~~~~~~i--l~~~i~~~~~~~~~e~~~~i~~l~~~G~-~vvVG~~~~~~~A~~~G  141 (169)
T pfam06506        85 NIIPGLKALSEL--LGLDIVQRAYQSEEEARAAVKELKAQGI-KVIVGDGLVCDLAEQAG  141 (169)
T ss_pred             CCCHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHCCC-EEEECCCHHHHHHHHCC
T ss_conf             303689999999--6993599996688999999999998699-59985828999999839


No 19 
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina frisia Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer . The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) . This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=89.98  E-value=0.27  Score=30.01  Aligned_cols=44  Identities=23%  Similarity=0.520  Sum_probs=35.9

Q ss_pred             CCC-HHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCC--E--EEHHHHCCC
Q ss_conf             568-69999999987-99999942768999988995--1--794653488
Q gi|254780664|r   26 KTG-VVEFASRLLSR-GIKIISTGGTCQLLEEEGIP--V--TSVFDITKF   69 (536)
Q Consensus        26 Ktg-l~~la~~L~~~-g~~iisTgGTa~~l~~~gi~--v--~~Vs~~Tgf   69 (536)
                      +.- +.|+++.|.++ ++.+++|++|.+.|.|+||.  +  ..+-++|.|
T Consensus        41 ~~Ek~~E~~~K~iekF~l~vvaTa~~~~~lieaGi~~~s~~~~L~~it~f   90 (170)
T TIGR00315        41 KDEKLLELVVKFIEKFDLPVVATADAIKALIEAGIEEKSEEANLHEITQF   90 (170)
T ss_pred             HCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             21213455555564328864747311388885466211100379999975


No 20 
>KOG0370 consensus
Probab=88.50  E-value=0.51  Score=27.95  Aligned_cols=222  Identities=20%  Similarity=0.190  Sum_probs=106.9

Q ss_pred             CCEEEEEE-----ECCCHHHHHCCC-CCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHH----HHHHHHCCCCC
Q ss_conf             84149999-----488889973176-531123200233434699987401563135308999898----89875302345
Q gi|254780664|r  107 ESIDLVVV-----NLYPFEESFCRE-DDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPL----FLAEMDVNNGK  176 (536)
Q Consensus       107 ~~IDlVvv-----NLYPF~~~v~~~-~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~----~~~el~~~~g~  176 (536)
                      +..|.+||     .|--|..+..+- .+.....|-.-|| .+.--|..|--.-|-.-..-=++..    +.+||.     
T Consensus       716 pslDY~v~KiprWDl~kf~~vs~~igssmKSvgEvm~iG-R~feea~QKalr~vd~~~~Gf~~~~~~~~~~~eL~-----  789 (1435)
T KOG0370         716 PSLDYCVVKIPRWDLSKFQRVSTEIGSSMKSVGEVMAIG-RTFEEAFQKALRMVDPSLLGFMSTPFLDDLDEELS-----  789 (1435)
T ss_pred             CCHHHEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHC-----
T ss_conf             532013440565337878788876252565246666221-30799998877514923237301021445777735-----


Q ss_pred             CCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC--------------CCCHHHHHHH-----------------
Q ss_conf             666788999999999874228-------99998753310--------------1211344321-----------------
Q gi|254780664|r  177 IPYNFRKKMARQAFSRTASYD-------TAICRWLANAE--------------SENFPDYLNI-----------------  218 (536)
Q Consensus       177 ~~~~~R~~lA~kAF~~ta~YD-------~~Ia~~l~~~~--------------~~~~p~~~~~-----------------  218 (536)
                      ..-..|-.-...|+.+-  |.       ..|-.||....              .+.+|..+.+                 
T Consensus       790 ~ptd~r~faia~a~~~~--~svd~~~elt~IdkWFL~k~~~i~~~~~~l~~~~~~~l~~~ll~~AK~~GFsD~QIa~~i~  867 (1435)
T KOG0370         790 TPTDRRVFAIAAALAKG--YSVDRIHELTRIDKWFLYKLMNIVNIYKLLESHSLSSLPKELLLRAKKLGFSDKQIAKFIG  867 (1435)
T ss_pred             CCCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHC
T ss_conf             87541489999998725--7799999999899999999999999999987436566999999999872986899998857


Q ss_pred             ----------------CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCC----CCCCCCCC--CCCC-CHHHHHHH
Q ss_conf             ----------------0123333436788100650576047766821012105----89888312--2212-00116776
Q gi|254780664|r  219 ----------------TAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQ----GKPLSYNN--INDL-DAAFELVS  275 (536)
Q Consensus       219 ----------------~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~----GKeLSYNN--llD~-daA~~lv~  275 (536)
                                      ++.|.-+---+|=|-|.-.+|..-+....-..|.-++    |.- -|-=  -+.. -.|..|++
T Consensus       868 s~El~vR~~R~~~gi~P~VKqIDTvAaE~Pa~TNYLY~tyn~~~hDv~F~~~g~mVlGsG-vYrIGSSVEFDwcaV~~~r  946 (1435)
T KOG0370         868 STELAVRRLRKELGIHPFVKQIDTVAAEFPAQTNYLYTTYNATEHDVDFNEHGVMVLGSG-VYRIGSSVEFDWCAVGCAR  946 (1435)
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCC-CEECCCCEEECHHHHHHHH
T ss_conf             218999999986298704542212422376633369997057424653388865997243-2563562055133554799


Q ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCHHHH-------HHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             42455672799961568656545201689-------999998533-21320045554275421457878865
Q gi|254780664|r  276 EFRSQDCAACVIVKHMNPCGVATADTLVE-------AYRRALSCD-PISAFGGIIAFNREVDQEVAKEVIKV  339 (536)
Q Consensus       276 ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~-------Ay~~A~~~D-P~SAFGGIIa~N~~vd~~~A~~I~~~  339 (536)
                      ++.+.+.++  |+-.-||--|++.=+.-+       .|++-+.-= -..+=|-||++-..+--..|-.+.+.
T Consensus       947 tLr~~g~kT--imvNyNPETVSTDyDecdrLYFeeis~E~vmDiYe~E~~~G~iis~GGQ~pnNiA~~L~r~ 1016 (1435)
T KOG0370         947 TLRKLGKKT--IMVNYNPETVSTDYDECDRLYFEEISYERVMDIYELENSEGIIISVGGQLPNNIALKLHRN 1016 (1435)
T ss_pred             HHHHCCCCE--EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHC
T ss_conf             999709846--9995686543575677766767542366534355430677269983684862021375862


No 21 
>pfam07085 DRTGG DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).
Probab=85.56  E-value=1.6  Score=24.32  Aligned_cols=46  Identities=26%  Similarity=0.434  Sum_probs=41.3

Q ss_pred             CCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf             5558999971995999389877988999999875977997478544
Q gi|254780664|r  489 PDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHF  534 (536)
Q Consensus       489 ~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF  534 (536)
                      +|.+..|..+++.+||=.||--=+++|++.|.+.+++++-|..-.|
T Consensus        51 ~di~~~a~~~~~~~iIlTgg~~p~~~v~~la~~~~ipii~t~~dT~   96 (105)
T pfam07085        51 EDIQLAALLAGIAGLILTGGFEPSEEVLKLAEEAGLPVLSTPYDTF   96 (105)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHH
T ss_conf             8999999982487899948989899999999877983999668899


No 22 
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=84.75  E-value=2.4  Score=23.10  Aligned_cols=106  Identities=23%  Similarity=0.299  Sum_probs=64.2

Q ss_pred             EEEEEEE-CCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             9899875-456869999999987--99999942768999988-9951794653488165198553237155535533088
Q gi|254780664|r   18 TALISVH-NKTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD   93 (536)
Q Consensus        18 rALiSV~-dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~   93 (536)
                      -|||.=- -|..+++|++.-.+.  +.+|++||.|.+.|.++ |++|..                 +.+--.||      
T Consensus         2 IALIAHD~kK~~lv~f~~~~~~~L~~~~L~ATgtTG~~i~e~~~L~V~~-----------------~~sGplGG------   58 (115)
T cd01422           2 IALIAHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQEATGLTVNR-----------------MKSGPLGG------   58 (115)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCEEE-----------------ECCCCCCH------
T ss_conf             8998345665999999999999970796686400999999864387688-----------------55799668------


Q ss_pred             CHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHH
Q ss_conf             9899999997799841499994888899731765311232002334346999874015631353089998
Q gi|254780664|r   94 NPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDY  163 (536)
Q Consensus        94 ~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY  163 (536)
                         |++-...---..||+|+.=--|...   .  +.+     -||  -+|+|.+.-  .+|.+-|++.-=
T Consensus        59 ---DqQIga~I~~g~id~viFf~DPl~~---~--ph~-----~Di--~aLlRlc~v--~niP~AtN~aTA  111 (115)
T cd01422          59 ---DQQIGALIAEGEIDAVIFFRDPLTA---Q--PHE-----PDV--KALLRLCDV--YNIPLATNRSTA  111 (115)
T ss_pred             ---HHHHHHHHHHCCCCEEEEECCCCCC---C--CCC-----CCH--HHHHHHHHH--CCCCCCCCHHHH
T ss_conf             ---9999999981998889984289877---9--997-----029--999999986--196121799889


No 23 
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=83.99  E-value=1.7  Score=24.16  Aligned_cols=88  Identities=15%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             31222120011677642455672799961568656545201689999998533213200455542754214578788654
Q gi|254780664|r  261 YNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVF  340 (536)
Q Consensus       261 YNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F  340 (536)
                      --...|.+.|..++.-+-+.+.+ +.=|--++|.       -.++.++..+--|    +=+|..-.-+|.+.++...+.=
T Consensus        13 V~r~~~~~~a~~~~~al~~~Gi~-~iEiTl~t~~-------a~~~I~~l~~~~p----~~~iGaGTV~~~e~~~~a~~aG   80 (196)
T pfam01081        13 VIVIKDKEDALPLAEALAAGGIR-VLEVTLRTPC-------ALDAIRLLRKNRP----DALVGAGTVLNAQQLAEAAEAG   80 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCC-EEEEECCCHH-------HHHHHHHHHHHCC----CCEEEEEECCCHHHHHHHHHCC
T ss_conf             99779999999999999987998-8999479827-------9999999996499----9679998376899999999749


Q ss_pred             HHHHEECCCCHHHHHHHHCC
Q ss_conf             31111268798999885124
Q gi|254780664|r  341 TEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       341 ~EvIiAP~f~~eAleiL~~K  360 (536)
                      .+-++.|+++++-++...+.
T Consensus        81 A~FivSP~~~~~v~~~a~~~  100 (196)
T pfam01081        81 AQFVVSPGLTADLLKHAVDV  100 (196)
T ss_pred             CCEEECCCCHHHHHHHHHHC
T ss_conf             99999787639999999973


No 24 
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase,  is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=83.78  E-value=1.6  Score=24.40  Aligned_cols=84  Identities=18%  Similarity=0.283  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             21200116776424556727999615686565452016899999985332132004555427542145787886543111
Q gi|254780664|r  265 NDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAI  344 (536)
Q Consensus       265 lD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvI  344 (536)
                      .|.+.|..++.-+-+.+.+ ++=|--++|..    -...+.+.+.+   |    .=+|..-.-+|.+.++...+-=.+-+
T Consensus        13 ~~~~~a~~~~~al~~~Gi~-~iEitl~t~~a----~~~i~~l~~~~---~----~~~iGaGTV~~~~~~~~a~~aGa~Fi   80 (190)
T cd00452          13 DDAEDALALAEALIEGGIR-AIEITLRTPGA----LEAIRALRKEF---P----EALIGAGTVLTPEQADAAIAAGAQFI   80 (190)
T ss_pred             CCHHHHHHHHHHHHHCCCC-EEEEECCCCHH----HHHHHHHHHHC---C----CCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             9999999999999986998-89996788029----99999999868---9----80896523477999999998599899


Q ss_pred             EECCCCHHHHHHHHCC
Q ss_conf             1268798999885124
Q gi|254780664|r  345 IAPTLSEEAADVLAKK  360 (536)
Q Consensus       345 iAP~f~~eAleiL~~K  360 (536)
                      +.|+++++-++..++.
T Consensus        81 vsP~~~~~v~~~a~~~   96 (190)
T cd00452          81 VSPGLDPEVVKAANRA   96 (190)
T ss_pred             ECCCCCHHHHHHHHHC
T ss_conf             7377999999999982


No 25 
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.77  E-value=1.7  Score=24.21  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=42.7

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             88312221200116776424556727999615686565452016899999985332132004555427542145787886
Q gi|254780664|r  259 LSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIK  338 (536)
Q Consensus       259 LSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~  338 (536)
                      +.--...|.+.|..++.-+-+.+.+ ++=|--++|..       .++.+...+.=|    .=+|..-.-+|.+.++...+
T Consensus        18 i~Vlr~~~~~~a~~i~~al~~gGi~-~iEiTl~tp~a-------~~~I~~l~~~~p----~~~vGaGTV~~~e~~~~a~~   85 (212)
T PRK05718         18 VPVIVINKLEDAVPLAKALVAGGLP-VLEVTLRTPAA-------LEAIRAIRKEVP----EALIGAGTVLNPEQLAQAIE   85 (212)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCHH-------HHHHHHHHHHCC----CCEEEEEEECCHHHHHHHHH
T ss_conf             9999748999999999999987997-89995789619-------999999997589----81796533134889999998


Q ss_pred             HHHHHHEECCCCHHHHHHHHC
Q ss_conf             543111126879899988512
Q gi|254780664|r  339 VFTEAIIAPTLSEEAADVLAK  359 (536)
Q Consensus       339 ~F~EvIiAP~f~~eAleiL~~  359 (536)
                      -=.+-++.|+++++-++.-.+
T Consensus        86 aGA~FiVSP~~~~~v~~~a~~  106 (212)
T PRK05718         86 AGAQFIVSPGLTPPLLKACQD  106 (212)
T ss_pred             CCCCEEECCCCCHHHHHHHHH
T ss_conf             499899848998999999998


No 26 
>PRK08104 consensus
Probab=83.06  E-value=1.8  Score=24.06  Aligned_cols=93  Identities=23%  Similarity=0.297  Sum_probs=54.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             58988831222120011677642455672799961568656545201689999998533213200455542754214578
Q gi|254780664|r  255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAK  334 (536)
Q Consensus       255 ~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~  334 (536)
                      +.+-+---..-|.+.|..++.-+-+.+.+ ++=|--++|+.       .++.++....-|    .-+|..-.-+|.+.++
T Consensus        14 ~~~iipVir~~~~~~a~~la~al~~gGi~-~iEiTlrt~~a-------~~~I~~l~~~~p----~~~vGaGTV~~~e~~~   81 (212)
T PRK08104         14 RGPVVPVIVINKLEHAVPLAKALVAGGVR-VLEVTLRTPCA-------LEAIRAIAKEVP----EAIVGAGTVLNPQQLA   81 (212)
T ss_pred             HCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCHH-------HHHHHHHHHHCC----CCEEEEEECCCHHHHH
T ss_conf             49868999779999999999999987998-89996888149-------999999998689----8568542026799999


Q ss_pred             HHHHHHHHHHEECCCCHHHHHHHHC
Q ss_conf             7886543111126879899988512
Q gi|254780664|r  335 EVIKVFTEAIIAPTLSEEAADVLAK  359 (536)
Q Consensus       335 ~I~~~F~EvIiAP~f~~eAleiL~~  359 (536)
                      ...+-=.+-++.|+++++-++.-.+
T Consensus        82 ~ai~aGA~FiVSP~~~~~v~~~a~~  106 (212)
T PRK08104         82 EVTEAGAQFAISPGLTEELLKAATE  106 (212)
T ss_pred             HHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf             9998599999848999999999998


No 27 
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.49  E-value=1.9  Score=23.81  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=23.2

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             5554275421457878865431111268798999885124
Q gi|254780664|r  321 IIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       321 IIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      +|..-.-+|.+.++...+-=.+-++.|.++++-++...+.
T Consensus        66 ~iGaGTV~~~e~~~~a~~aGA~FiVSP~~~~~vi~~a~~~  105 (210)
T PRK07455         66 IIGTGTLLTLEDLEEAIAAGAQFCFTPHVDLELIQAAVAA  105 (210)
T ss_pred             EEEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHC
T ss_conf             8988818789999999986999998688889999999982


No 28 
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.10  E-value=2  Score=23.66  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=50.1

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             83122212001167764245567279996156865654520168999999853321320045554275421457878865
Q gi|254780664|r  260 SYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKV  339 (536)
Q Consensus       260 SYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~  339 (536)
                      ---..-|.+.+..++.-+-+.+.+ ++=|--++|..       .++.+...+.=|    +-+|..-.-+|.+.++...+-
T Consensus        19 pVlr~~~~~~a~~~~~al~~gGi~-~iEITlrt~~a-------~~~I~~l~~~~p----~~~vGaGTVl~~e~~~~a~~a   86 (212)
T PRK06015         19 PVLLIDDVEHAVPLARALARGGLP-AIEITLRTPAA-------LDAIRAVAAEVE----EAIVGAGTILNAKQFEDAAKA   86 (212)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCCH-------HHHHHHHHHHCC----CCEEEEEECCCHHHHHHHHHC
T ss_conf             999779999999999999987998-89996899519-------999999998699----967954211569999999984


Q ss_pred             HHHHHEECCCCHHHHHHHHCC
Q ss_conf             431111268798999885124
Q gi|254780664|r  340 FTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       340 F~EvIiAP~f~~eAleiL~~K  360 (536)
                      =.+-++.|+++++-++.-++.
T Consensus        87 GA~FiVSP~~~~~v~~~a~~~  107 (212)
T PRK06015         87 GSRFIVSPGTTQELLAAANDS  107 (212)
T ss_pred             CCCEEECCCCCHHHHHHHHHC
T ss_conf             998998589999999999983


No 29 
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=81.00  E-value=1.9  Score=23.80  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             1200116776424556727999615686565452016899999985332132004--55542754214578788654311
Q gi|254780664|r  266 DLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGG--IIAFNREVDQEVAKEVIKVFTEA  343 (536)
Q Consensus       266 D~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGG--IIa~N~~vd~~~A~~I~~~F~Ev  343 (536)
                      |.+.|..++.-+-+.+.+ ++=|--++|+..    ...+...+.        ||.  .|..-.-+|.+.++...+-=.+-
T Consensus        20 ~~~~a~~~~~al~~~Gi~-~iEVTl~tp~a~----~~I~~l~~~--------~~~~~~iGAGTVlt~e~~~~ai~aGA~F   86 (206)
T PRK09140         20 TPDEALAHVGALIEAGFR-AIEIPLNSPDPF----DSIAALVKA--------LGDDALIGAGTVLSPEQVDRLADAGGRL   86 (206)
T ss_pred             CHHHHHHHHHHHHHCCCC-EEEEECCCCCHH----HHHHHHHHH--------CCCCEEEEEEECCCHHHHHHHHHCCCCE
T ss_conf             999999999999986998-899917997699----999999996--------7986599862046799999999859999


Q ss_pred             HEECCCCHHHHHHHHCC
Q ss_conf             11268798999885124
Q gi|254780664|r  344 IIAPTLSEEAADVLAKK  360 (536)
Q Consensus       344 IiAP~f~~eAleiL~~K  360 (536)
                      |+.|.++++-++..+++
T Consensus        87 iVSP~~~~~vi~~a~~~  103 (206)
T PRK09140         87 IVTPNIDPEVIRRAVAY  103 (206)
T ss_pred             EECCCCCHHHHHHHHHC
T ss_conf             99999989999999982


No 30 
>PRK06857 consensus
Probab=80.83  E-value=2.4  Score=23.06  Aligned_cols=88  Identities=13%  Similarity=0.156  Sum_probs=46.0

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             83122212001167764245567279996156865654520168999999853321320045554275421457878865
Q gi|254780664|r  260 SYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKV  339 (536)
Q Consensus       260 SYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~  339 (536)
                      .-....|.+.+..++.-+-+.+.+ +.=|--++|+.       .++.+...+.-|    .=+|..-.-+|.+.++.-.+-
T Consensus        16 pVir~~~~~~a~~~~~al~~gGi~-~iEiTlrt~~a-------~~~I~~l~~~~p----~~~vGaGTV~~~e~~~~a~~a   83 (209)
T PRK06857         16 PVIAIDDAEDILPLAKVLAENGLP-VAEITFRSAAA-------AEAIRLLREAYP----DMLIGAGTVLTPEQVDAAKEA   83 (209)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCCH-------HHHHHHHHHHCC----CCEEEEEECCCHHHHHHHHHC
T ss_conf             999759999999999999987998-89995899329-------999999997589----948999937679999999983


Q ss_pred             HHHHHEECCCCHHHHHHHHC
Q ss_conf             43111126879899988512
Q gi|254780664|r  340 FTEAIIAPTLSEEAADVLAK  359 (536)
Q Consensus       340 F~EvIiAP~f~~eAleiL~~  359 (536)
                      =.+-++.|+++++-++...+
T Consensus        84 GA~FiVSP~~~~~v~~~a~~  103 (209)
T PRK06857         84 GADFIVSPGFNPNTVKYCQQ  103 (209)
T ss_pred             CCCEEECCCCCHHHHHHHHH
T ss_conf             99999908999999999997


No 31 
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.79  E-value=1.9  Score=23.82  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             88312221200116776424556727999615686565452016899999985-33213200455542754214578788
Q gi|254780664|r  259 LSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALS-CDPISAFGGIIAFNREVDQEVAKEVI  337 (536)
Q Consensus       259 LSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~-~DP~SAFGGIIa~N~~vd~~~A~~I~  337 (536)
                      +.---.-|.+.|..++.-+-+.+.++.=|- -.+|+.    ....++..+.+. -.|    +=+|..-.-+|.+.++...
T Consensus        19 ipVvr~~~~e~a~~~a~aL~~gGi~~iEiT-lrt~~a----~~~i~~l~~~~~~~~p----~~~iGaGTVl~~~~~~~a~   89 (223)
T PRK07114         19 VPVFYHSDIEVAKKVVKACYDGGVRAFEFT-NRGDFA----HEVFGELVKYAAKECP----EMILGVGSIVDAATAALYI   89 (223)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCEEEEE-CCCCCH----HHHHHHHHHHHHHHCC----CCEEEEECCCCHHHHHHHH
T ss_conf             999982899999999999998899889995-889658----9999999999986689----8089655188999999999


Q ss_pred             HHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             65431111268798999885124
Q gi|254780664|r  338 KVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       338 ~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      +-=.+-++.|+++++-++...+.
T Consensus        90 ~aGA~FiVSP~~~~~v~~~~~~~  112 (223)
T PRK07114         90 QLGANFVVGPLFNEDIAKVCNRR  112 (223)
T ss_pred             HCCCCEEECCCCCHHHHHHHHHC
T ss_conf             85998999999999999999983


No 32 
>PRK08904 consensus
Probab=80.56  E-value=2.5  Score=22.96  Aligned_cols=93  Identities=22%  Similarity=0.238  Sum_probs=57.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             89888312221200116776424556727999615686565452016899999985332132004555427542145787
Q gi|254780664|r  256 GKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKE  335 (536)
Q Consensus       256 GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~  335 (536)
                      .+-+.-...-|.+.|..++.-+-+.+.+ ++=|--++|..       .++.+...+--|    +=+|..-.-+|.+.++.
T Consensus        10 ~~iipVir~~~~~~a~~~a~al~~~Gi~-~iEiTlrtp~a-------~~~i~~l~~~~p----~~~vGaGTVl~~e~~~~   77 (207)
T PRK08904         10 GAVVPVMAIDDLSTAVDLSRALVEGGIP-TLEITLRTPVG-------LDAIRLIAKEVP----NAIVGAGTVTNPEQLKA   77 (207)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCHH-------HHHHHHHHHHCC----CCEEEEEECCCHHHHHH
T ss_conf             9979999769999999999999987998-89995799139-------999999998689----87685531368999999


Q ss_pred             HHHHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             8865431111268798999885124
Q gi|254780664|r  336 VIKVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       336 I~~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      ..+-=.+-|+.|+++++-++..++.
T Consensus        78 a~~aGA~FiVSP~~~~~v~~~a~~~  102 (207)
T PRK08904         78 VEDAGAVFAISPGLHESLAKAGHNS  102 (207)
T ss_pred             HHHCCCCEEECCCCCHHHHHHHHHC
T ss_conf             9984999998489989999999983


No 33 
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=80.36  E-value=1.6  Score=24.32  Aligned_cols=113  Identities=21%  Similarity=0.279  Sum_probs=75.6

Q ss_pred             EEEEEEEEC-CCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             698998754-56869999999987--99999942768999988-995179465348816519855323715553553308
Q gi|254780664|r   17 KTALISVHN-KTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        17 krALiSV~d-Ktgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r   92 (536)
                      +-|||.=-. |..+++|++.-.+.  +.+|++||.|.+.|.++ |++|.                 .+.+--.||     
T Consensus         7 ~IALIAHD~kK~~lv~f~~~~~~~L~~~~L~ATgtTG~~i~~~~gL~v~-----------------~~~SGplGG-----   64 (146)
T PRK05234          7 RIALIAHDHKKDDLVAWVKAHKELLEQHELYATGTTGGLIQEATGLDVT-----------------RLLSGPLGG-----   64 (146)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCEE-----------------EECCCCCCH-----
T ss_conf             5899955576499999999999998279779667599999998798369-----------------973688418-----


Q ss_pred             CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHH
Q ss_conf             89899999997799841499994888899731765311232002334346999874015631353089998988987
Q gi|254780664|r   93 DNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAE  169 (536)
Q Consensus        93 ~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~e  169 (536)
                          |.+-...---..||+|+.=--|...   .  +++     -||  -+|+|.+.-  .+|.+.|+++-=+-++..
T Consensus        65 ----DqQIga~Ia~g~id~viFF~DPl~~---~--phd-----~Dv--~aLlRlc~v--~nIP~AtN~aTAe~li~~  123 (146)
T PRK05234         65 ----DQQIGALIAEGKIDMLIFFWDPLTA---Q--PHD-----PDV--KALLRLADV--WNIPVATNRATADFLISS  123 (146)
T ss_pred             ----HHHHHHHHHHCCCCEEEEEECCCCC---C--CCC-----CHH--HHHHHHHHH--HCCCCCCCHHHHHHHHCC
T ss_conf             ----9999999983998789994088755---7--775-----209--999999987--287642689789999708


No 34 
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=79.80  E-value=5.3  Score=20.61  Aligned_cols=81  Identities=26%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHCCCCC---EEEEEECCEEEEECCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-----CCC
Q ss_conf             8899999986005667---7999968938997296888-899999999998764200122223487099973-----668
Q gi|254780664|r  416 RDMKFAFKVVKHVKSN---AVVYAKDGRTVGIGSGQTS-RVDSTRFAAIKAHNISAQADVKSMTNGSVIASE-----AFY  486 (536)
Q Consensus       416 ~dL~FA~kv~K~vkSN---AIv~ak~~~tiGiGaGQ~s-RVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSD-----AFF  486 (536)
                      ..|..||+..-.+..|   .-|++|++++||.|.-+.- +=.|=..|+.+|++         .++|+.+-.-     -|=
T Consensus        12 ~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~ag~---------~a~Gat~yVTLEPCsH~G   82 (146)
T COG0117          12 RALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMAGE---------AARGATAYVTLEPCSHYG   82 (146)
T ss_pred             HHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCC---------CCCCCEEEEEECCCCCCC
T ss_conf             99999985086678999666999889999866603778997289999997585---------557878999724766689


Q ss_pred             CCCCHHHHHHHCCCCEEEE
Q ss_conf             6855589999719959993
Q gi|254780664|r  487 PFPDGIVEAIKAGVTAVIQ  505 (536)
Q Consensus       487 PF~D~ie~aa~~Gi~aIiq  505 (536)
                      -=|-+.+.+.++||+-|+-
T Consensus        83 rTPPC~~ali~agi~rVvv  101 (146)
T COG0117          83 RTPPCADALIKAGVARVVV  101 (146)
T ss_pred             CCCCHHHHHHHCCCCEEEE
T ss_conf             9964579999709888999


No 35 
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.77  E-value=5.3  Score=20.60  Aligned_cols=118  Identities=22%  Similarity=0.397  Sum_probs=78.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             1246777868898889999998600566779---9996893899729688889999999999876420012222348709
Q gi|254780664|r  403 TVVTKRSPTDQELRDMKFAFKVVKHVKSNAV---VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSV  479 (536)
Q Consensus       403 ~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAI---v~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~v  479 (536)
                      .+.|+..|+.++++|...|..++++.-+=-|   ++++++..|++-+-     .-+..-+.++.+....- . ..-+|.|
T Consensus       141 g~lt~~~P~~~d~~dI~~g~~aA~~lg~lDVGQ~aV~~~g~vvAvEg~-----EGTd~ml~R~a~lr~~g-r-~~rr~gv  213 (279)
T COG3494         141 GPLTKKEPDNEDLRDIELGIEAANALGALDVGQGAVVVGGRVVAVEGA-----EGTDAMLRRVADLRKAG-R-AERRGGV  213 (279)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEC-----CCHHHHHHHHHHHHHCC-C-CCCCCCE
T ss_conf             765678887224889999999998742034565469967769999603-----26499999999876435-5-5656878


Q ss_pred             EEECCC--------CC--CCCHHHHHHHCCCCEEE-ECCCCC--CHHHHHHHHHHCCCEEE
Q ss_conf             997366--------86--85558999971995999-389877--98899999987597799
Q gi|254780664|r  480 IASEAF--------YP--FPDGIVEAIKAGVTAVI-QPGGSV--RDSEAITVADQHGIAMV  527 (536)
Q Consensus       480 laSDAF--------FP--F~D~ie~aa~~Gi~aIi-qPGGSi--rD~evI~aan~~gi~m~  527 (536)
                      +.-=+=        .|  =++.|+.|+++|.+.|. |-|-++  .-++.|++||++||-.+
T Consensus       214 LvK~aKp~QD~R~DlPtIG~~Ti~~a~kaGlaGIaieagr~lile~e~~l~~Ank~giFI~  274 (279)
T COG3494         214 LVKMAKPQQDERADLPTIGPNTIENAAKAGLAGIAIEAGRVLILEREATLKLANKLGIFIV  274 (279)
T ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEECCHHHHHHHHHCCEEEE
T ss_conf             9982688854313687558899999997582113500393799653888986765783899


No 36 
>PRK08782 consensus
Probab=78.20  E-value=3.2  Score=22.15  Aligned_cols=92  Identities=14%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             98883122212001167764245567279996156865654520168999999853321320045554275421457878
Q gi|254780664|r  257 KPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEV  336 (536)
Q Consensus       257 KeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I  336 (536)
                      +-+.-...-|.+.|..++.-+-+.+.++ .=|--++|..    -...+.+.+.   -|    .=+|..-.-+|.+.++..
T Consensus        18 ~iipVir~~~~~~a~~~~eal~~gGi~~-iEiTlrt~~a----~~~i~~l~~~---~p----~~~vGaGTV~~~e~~~~a   85 (219)
T PRK08782         18 GILPVVTVDTLDQARRVADALLEGGLPA-IELTLRTPVA----IEALAMLKRE---LP----NIVIGAGTVLSERQLRQS   85 (219)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCE-EEEECCCCHH----HHHHHHHHHH---CC----CCEEEEEEECCHHHHHHH
T ss_conf             9789997599999999999999879987-9996799339----9999999986---89----947999970589999999


Q ss_pred             HHHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             865431111268798999885124
Q gi|254780664|r  337 IKVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       337 ~~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      .+.=.+-++.|+++++-++...+.
T Consensus        86 ~~aGA~FiVSP~~~~~v~~~a~~~  109 (219)
T PRK08782         86 VDAGADFLVTPGTPAPLARLLADA  109 (219)
T ss_pred             HHCCCCEEECCCCCHHHHHHHHHC
T ss_conf             984998998789979999999981


No 37 
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.79  E-value=6  Score=20.19  Aligned_cols=20  Identities=25%  Similarity=0.539  Sum_probs=9.7

Q ss_pred             HHHHHHCCCCCEEEEEEECC
Q ss_conf             99999779984149999488
Q gi|254780664|r   98 MKFMQDHELESIDLVVVNLY  117 (536)
Q Consensus        98 ~~~l~~~~i~~IDlVvvNLY  117 (536)
                      +....++||..|.|+....|
T Consensus       100 I~lA~~LGi~~I~l~g~dv~  119 (284)
T PRK13210        100 IRLAQDLGIRTIQLAGYDVY  119 (284)
T ss_pred             HHHHHHCCCCEEEECCCCCC
T ss_conf             99999809978996887666


No 38 
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.06  E-value=4  Score=21.50  Aligned_cols=93  Identities=15%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             88312221200116776424556727999615686565452016899999985332132004555427542145787886
Q gi|254780664|r  259 LSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIK  338 (536)
Q Consensus       259 LSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~  338 (536)
                      +.--...|.+.|..++.-+-+.+.+ +.=|--++|..    ....+...+.+...|    +=.|..-.-+|.+.++...+
T Consensus        16 iaVlr~~~~~~a~~~~~al~~gGi~-~iEITl~tp~a----~~~i~~l~~~~~~~p----~~~iGaGTV~~~e~~~~a~~   86 (209)
T PRK06552         16 VAVVRGESKEEALKISLAVIKGGIK-AIEVTYTNPFA----SEVIKELVERYKDDP----EVLIGAGTVLDAVTARQAIL   86 (209)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCCH----HHHHHHHHHHHCCCC----CEEEEEECCCCHHHHHHHHH
T ss_conf             9999728999999999999987998-89996789759----999999999817799----81898872748999999998


Q ss_pred             HHHHHHEECCCCHHHHHHHHCC
Q ss_conf             5431111268798999885124
Q gi|254780664|r  339 VFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       339 ~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      -=.+-|+.|+++++-++..++.
T Consensus        87 aGA~FiVSP~~~~~v~~~a~~~  108 (209)
T PRK06552         87 AGAQFIVSPSFNRETAKICNRY  108 (209)
T ss_pred             CCCCEEECCCCCHHHHHHHHHC
T ss_conf             5998897699989999999985


No 39 
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=74.60  E-value=6.2  Score=20.09  Aligned_cols=83  Identities=17%  Similarity=0.279  Sum_probs=42.0

Q ss_pred             HHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHH---HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHH
Q ss_conf             2768999988995179465348816519855323715553---5533088989999999779984149999488889973
Q gi|254780664|r   47 GGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYG---GILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESF  123 (536)
Q Consensus        47 gGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~g---gIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v  123 (536)
                      ..|.++|+++|+++..           ++|  .|.+.+-+   -++.-  +++|+...-+.|.-.+-++=-|+.  .|  
T Consensus        17 e~~~~ll~~aGl~~~~-----------~~R--~l~~~~~~~~i~~~~~--R~~DIp~yV~~G~~DlGI~G~D~l--~E--   77 (287)
T PRK00489         17 EPALELLARAGLKIRL-----------DSR--DLIATIEDNPIEVLFL--RPDDIPGYVADGVVDLGITGEDLL--EE--   77 (287)
T ss_pred             HHHHHHHHHCCCCCCC-----------CCC--EEEEECCCCCEEEEEE--CHHHHHHHHHCCCCCEEEEEEEEH--HH--
T ss_conf             8999999987996578-----------985--2687728998799998--879899999769977755133121--20--


Q ss_pred             CCCCCHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf             176531123200233434699987401
Q gi|254780664|r  124 CREDDYYTMVENIDIGGPSMIRAAAKN  150 (536)
Q Consensus       124 ~~~~~~~~~IEnIDIGGpsmiRAAAKN  150 (536)
                       ++.. -..+...+.|...|.=|+-++
T Consensus        78 -~~~~-v~~~~~LgfG~crlvvAvP~~  102 (287)
T PRK00489         78 -SDAD-VEELLDLGFGKCRLVLAVPED  102 (287)
T ss_pred             -CCCC-CEEEECCCCCCEEEEEEECCC
T ss_conf             -6898-169970688748999995177


No 40 
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=73.86  E-value=7.5  Score=19.48  Aligned_cols=17  Identities=18%  Similarity=0.554  Sum_probs=6.2

Q ss_pred             CCCEEEEC--CCCCCHHHH
Q ss_conf             99599938--987798899
Q gi|254780664|r  499 GVTAVIQP--GGSVRDSEA  515 (536)
Q Consensus       499 Gi~aIiqP--GGSirD~ev  515 (536)
                      |++++-.|  +|.+.++.|
T Consensus        57 Gl~y~~iPv~~~~~t~~~v   75 (110)
T pfam04273        57 GLAYRFIPVISGQITEADV   75 (110)
T ss_pred             CCEEEEEECCCCCCCHHHH
T ss_conf             9979996447789899999


No 41 
>TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=72.35  E-value=5.4  Score=20.50  Aligned_cols=80  Identities=25%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECC-EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC-CH
Q ss_conf             98889999998600566779999689-38997296888899999999998764200122223487099973668685-55
Q gi|254780664|r  414 ELRDMKFAFKVVKHVKSNAVVYAKDG-RTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFP-DG  491 (536)
Q Consensus       414 e~~dL~FA~kv~K~vkSNAIv~ak~~-~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~-D~  491 (536)
                      .++|++.|.+.+---|-|-|-+...- =...+-.     -+=++.|.+-|+..+.+     .-.|.|..+|+|+-++ |-
T Consensus        96 kl~D~iiA~~A~tdS~~nr~~f~~~P~D~~~~Ad-----f~L~~~A~~tAk~~g~~-----~~vG~vF~~D~FY~~~~~~  165 (234)
T TIGR00107        96 KLRDVIIAMGASTDSKVNRVRFVEVPEDFAAIAD-----FELVELAYDTAKALGID-----VRVGNVFSADAFYSPDKDV  165 (234)
T ss_pred             CEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCC-----EEECCEECCCCCCCCCHHH
T ss_conf             6068897114232233555505687644334789-----89999999999867972-----7765233111130744889


Q ss_pred             HHHHHHCCCCEE
Q ss_conf             899997199599
Q gi|254780664|r  492 IVEAIKAGVTAV  503 (536)
Q Consensus       492 ie~aa~~Gi~aI  503 (536)
                      ++.+.++|+=+|
T Consensus       166 ~~~~~ky~~LaV  177 (234)
T TIGR00107       166 FDLMAKYGILAV  177 (234)
T ss_pred             HHHHHHCCCCEE
T ss_conf             999987598722


No 42 
>pfam00591 Glycos_transf_3 Glycosyl transferase family, a/b domain. This family includes anthranilate phosphoribosyltransferase (TrpD), thymidine phosphorylase. All these proteins can transfer a phosphorylated ribose substrate.
Probab=71.54  E-value=5.4  Score=20.55  Aligned_cols=19  Identities=16%  Similarity=0.238  Sum_probs=8.7

Q ss_pred             HHEECCCCHHHHHHHHCCC
Q ss_conf             1112687989998851245
Q gi|254780664|r  343 AIIAPTLSEEAADVLAKKP  361 (536)
Q Consensus       343 vIiAP~f~~eAleiL~~KK  361 (536)
                      .+-||.|-|....+..-+|
T Consensus        78 FlfAp~~hPamk~v~~~R~   96 (254)
T pfam00591        78 FLFAPNYHPAMKHVAPVRK   96 (254)
T ss_pred             EECCHHHCHHHHHHHHHHH
T ss_conf             8641120989999999998


No 43 
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=70.96  E-value=4.2  Score=21.30  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CCCHHHHHHHHHH-CCCEEEEEHHHHHHHHHCCCCE
Q ss_conf             5686999999998-7999999427689999889951
Q gi|254780664|r   26 KTGVVEFASRLLS-RGIKIISTGGTCQLLEEEGIPV   60 (536)
Q Consensus        26 Ktgl~~la~~L~~-~g~~iisTgGTa~~l~~~gi~v   60 (536)
                      ..-|.+++..+.+ .++.|++||++.+-+.+.|+.+
T Consensus        48 d~elle~~iki~k~~~ipi~aTg~s~~~l~e~g~~~   83 (171)
T PRK00945         48 DEELLDRAIKIAKAKNIPVAATGSSYKGLIEKGVKS   83 (171)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCH
T ss_conf             889999999999874985687445205456458871


No 44 
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=70.02  E-value=6.4  Score=20.01  Aligned_cols=79  Identities=22%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             CHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC---HHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             012105898883122212001167764245567279996156865654520---16899999985332132004555427
Q gi|254780664|r  250 HAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATAD---TLVEAYRRALSCDPISAFGGIIAFNR  326 (536)
Q Consensus       250 ~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~---~~~~Ay~~A~~~DP~SAFGGIIa~N~  326 (536)
                      ..++|.|++  +||..|+-.|.+...+    ..|..++|+|..+-|...+.   ....+....+.+ |...|.    +|.
T Consensus       146 ELe~Ltg~~--~~~~~da~~aa~~L~~----~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~~----~~G  214 (281)
T COG2240         146 ELEILTGKP--LNTLDDAVKAARKLGA----DGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVPFI----PNG  214 (281)
T ss_pred             HHHHHHCCC--CCCHHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHH-HCCCCC----CCC
T ss_conf             999984988--7888999999999751----48988999534536787734999613122332343-227889----998


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             5421457878865
Q gi|254780664|r  327 EVDQEVAKEVIKV  339 (536)
Q Consensus       327 ~vd~~~A~~I~~~  339 (536)
                      +=|.-+|..+.+.
T Consensus       215 tGDL~sallla~l  227 (281)
T COG2240         215 TGDLFSALLLARL  227 (281)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             2499999999999


No 45 
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=69.74  E-value=5.5  Score=20.50  Aligned_cols=86  Identities=17%  Similarity=0.290  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             22212001167764245567279996156865654520168999999853321320045554275421457878865431
Q gi|254780664|r  263 NINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTE  342 (536)
Q Consensus       263 NllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~E  342 (536)
                      -..|.+-|..++.-+-+.+.+ |+=|--++||.    .....+..+.+   |    .-+|.--.-+|.+.++....-=.+
T Consensus        20 r~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a----~e~I~~l~~~~---p----~~lIGAGTVL~~~q~~~a~~aGa~   87 (211)
T COG0800          20 RGDDVEEALPLAKALIEGGIP-AIEITLRTPAA----LEAIRALAKEF---P----EALIGAGTVLNPEQARQAIAAGAQ   87 (211)
T ss_pred             EECCHHHHHHHHHHHHHCCCC-EEEEECCCCCH----HHHHHHHHHHC---C----CCEECCCCCCCHHHHHHHHHCCCC
T ss_conf             708999999999999976987-69996479878----99999999867---4----658824556699999999985997


Q ss_pred             HHEECCCCHHHHHHHHCC
Q ss_conf             111268798999885124
Q gi|254780664|r  343 AIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       343 vIiAP~f~~eAleiL~~K  360 (536)
                      -|+.|++++|-++.-..+
T Consensus        88 fiVsP~~~~ev~~~a~~~  105 (211)
T COG0800          88 FIVSPGLNPEVAKAANRY  105 (211)
T ss_pred             EEECCCCCHHHHHHHHHC
T ss_conf             898999999999999867


No 46 
>PRK05693 short chain dehydrogenase; Provisional
Probab=69.07  E-value=9.5  Score=18.75  Aligned_cols=82  Identities=16%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             EEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHH---CCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             36989987545686-99999999879999994276899998---899517946534881651985532371555355330
Q gi|254780664|r   16 VKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEE---EGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI   91 (536)
Q Consensus        16 ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~---~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~   91 (536)
                      ||.+||.=... || ..+|+.|.+.|+.++.++-....|.+   .|+....+ |+|...++                   
T Consensus         1 MKvvlITGass-GIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~-Dvtd~~~i-------------------   59 (274)
T PRK05693          1 MPVVLITGCSS-GIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQL-DVNDGAAL-------------------   59 (274)
T ss_pred             CCEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEE-ECCCHHHH-------------------
T ss_conf             99899948885-8999999999987999999979999999998489918998-46998999-------------------


Q ss_pred             CCCHHHHHHHHHCCCCCEEEEEEEC-----CCHHHH
Q ss_conf             8898999999977998414999948-----888997
Q gi|254780664|r   92 RDNPAHMKFMQDHELESIDLVVVNL-----YPFEES  122 (536)
Q Consensus        92 r~~~~~~~~l~~~~i~~IDlVvvNL-----YPF~~~  122 (536)
                         ..-.+++.+ ....||++|.|=     -||+++
T Consensus        60 ---~~~~~~~~~-~~g~iDiLVNNAG~~~~g~~~~~   91 (274)
T PRK05693         60 ---ARLAEELEA-EHQGLDVLINNAGYGAMGPLLDG   91 (274)
T ss_pred             ---HHHHHHHHH-HCCCCCEEEECCCCCCCCCHHHH
T ss_conf             ---999999999-72997689988867788758987


No 47 
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP,  providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=68.01  E-value=9.9  Score=18.60  Aligned_cols=74  Identities=20%  Similarity=0.270  Sum_probs=49.3

Q ss_pred             EEEEEECCEEEEECCC-----CCC---------------------HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             7999968938997296-----888---------------------89999999999876420012222348709997366
Q gi|254780664|r  432 AVVYAKDGRTVGIGSG-----QTS---------------------RVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAF  485 (536)
Q Consensus       432 AIv~ak~~~tiGiGaG-----Q~s---------------------RVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAF  485 (536)
                      .=||++++..||.|-.     ..+                     =+.|-..|+.+|...+      ..++|+.|-.- -
T Consensus        23 GaVIV~~~~iIs~GyNG~p~g~~~~~~~~~~~~~~~~~~~~~~~~~iHAE~nAi~~a~~~~------~~~~g~tlYvT-~   95 (131)
T cd01286          23 GAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAARHG------VSLEGATLYVT-L   95 (131)
T ss_pred             EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC------CCCCCCEEECC-C
T ss_conf             8999979938966448998888874000331124443323222221789999999999829------98888666607-8


Q ss_pred             CCCCCHHHHHHHCCCCEEEECCCCCCH
Q ss_conf             868555899997199599938987798
Q gi|254780664|r  486 YPFPDGIVEAIKAGVTAVIQPGGSVRD  512 (536)
Q Consensus       486 FPF~D~ie~aa~~Gi~aIiqPGGSirD  512 (536)
                      ||=+.+...+..+||+-||-+..=-.|
T Consensus        96 ~PC~~Ca~~Ii~aGI~rVvy~~~y~~~  122 (131)
T cd01286          96 FPCIECAKLIIQAGIKKVVYAEPYDDD  122 (131)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             977999999998299999989976998


No 48 
>PRK06153 hypothetical protein; Provisional
Probab=66.31  E-value=2.9  Score=22.44  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=9.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             4555427542145787886
Q gi|254780664|r  320 GIIAFNREVDQEVAKEVIK  338 (536)
Q Consensus       320 GIIa~N~~vd~~~A~~I~~  338 (536)
                      ||++--.-+|.+....+..
T Consensus       248 gIv~h~~~i~~~nv~~L~g  266 (393)
T PRK06153        248 GIVSHPYYIDEDNVDELDG  266 (393)
T ss_pred             CCCCCCEEECCCHHHHHCC
T ss_conf             8424623763202556439


No 49 
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=65.97  E-value=11  Score=18.32  Aligned_cols=154  Identities=18%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCC-CCCCCCCCCCCCCC
Q ss_conf             45787886543111126879899988512455315631676677766640203210223101233-45310001246777
Q gi|254780664|r  331 EVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDN-VVDNKELTVVTKRS  409 (536)
Q Consensus       331 ~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~-~~~~~~~~vVT~~~  409 (536)
                      --|+.|.+.|+|-.+--.=....+-.--..|.-|+-...-.  .-.+++   +|+---|+|+..- .+    ..+-|--.
T Consensus        24 lRAK~iAetfLe~~~~vnevR~mlgfTGtYKGk~iSimg~G--mGipS~---sIY~~ELi~~y~Vk~i----IRvGt~Ga   94 (236)
T COG0813          24 LRAKYIAETFLENAVCVNEVRGMLGFTGTYKGKKISVMGHG--MGIPSI---SIYSRELITDYGVKKI----IRVGTCGA   94 (236)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEC--CCCCCH---HHHHHHHHHHHCCCEE----EEEECCCC
T ss_conf             33789999987423022321000103413438478998734--887508---9999999987385348----99873434


Q ss_pred             C-CHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-C
Q ss_conf             8-6889888999999860056677999968938997296888899999999998764200122223487099973668-6
Q gi|254780664|r  410 P-TDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFY-P  487 (536)
Q Consensus       410 p-t~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFF-P  487 (536)
                      . .+-.+.|+..|...+-.-+=|-+.+.      +--.-++---+-++.|.+.|++.+.+.     --|-|++||.|. |
T Consensus        95 l~~~v~l~DvVia~~A~tds~~~~~~f~------~~df~~~ad~~Ll~~a~~~A~e~gi~~-----hvgnv~ssD~FY~~  163 (236)
T COG0813          95 LSEDVKLRDVVIAQGASTDSNVNRIRFK------PHDFAPIADFELLEKAYETAKELGIDT-----HVGNVFSSDLFYNP  163 (236)
T ss_pred             CCCCCCCCEEEEECCCCCCCHHHHCCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCE-----EEEEEEEEECCCCC
T ss_conf             5677740047886144674124330157------655445599999999999999839871-----55216643013578


Q ss_pred             CCCHHHHHHHCCCCEEE
Q ss_conf             85558999971995999
Q gi|254780664|r  488 FPDGIVEAIKAGVTAVI  504 (536)
Q Consensus       488 F~D~ie~aa~~Gi~aIi  504 (536)
                      =++-.+.+++.||.+|=
T Consensus       164 ~~~~~~~~~~~gvlaVe  180 (236)
T COG0813         164 DTEMFDLMAKYGVLAVE  180 (236)
T ss_pred             CHHHHHHHHHHCCCEEE
T ss_conf             77799999983973787


No 50 
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=65.47  E-value=11  Score=18.26  Aligned_cols=19  Identities=32%  Similarity=0.319  Sum_probs=7.0

Q ss_pred             HHHHHHHHCCCCCEEEECC
Q ss_conf             8999885124553156316
Q gi|254780664|r  351 EEAADVLAKKPSMRFLKTS  369 (536)
Q Consensus       351 ~eAleiL~~KKnlRil~~~  369 (536)
                      ++|++-|++.-.-|++.++
T Consensus       105 ~~~v~~l~~~gv~~iv~~p  123 (320)
T COG0276         105 EEAVEELKKDGVERIVVLP  123 (320)
T ss_pred             HHHHHHHHHCCCCEEEEEE
T ss_conf             9999999971987599997


No 51 
>PRK00194 hypothetical protein; Validated
Probab=65.22  E-value=10  Score=18.51  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             EEEEEEEEE--CCCCHH-HHHHHHHHCCCEEEEEH
Q ss_conf             369899875--456869-99999998799999942
Q gi|254780664|r   16 VKTALISVH--NKTGVV-EFASRLLSRGIKIISTG   47 (536)
Q Consensus        16 ikrALiSV~--dKtgl~-~la~~L~~~g~~iisTg   47 (536)
                      |.||+|+|+  ||.||+ .+++.|.++|+.|+-..
T Consensus         1 m~~avITV~G~DrpGIVa~Vt~~La~~~~NI~Dis   35 (90)
T PRK00194          1 MMKAIITVIGKDRVGIVAGVSTVLAELNVNILDIS   35 (90)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf             95699999879988789999999998699989551


No 52 
>PRK06444 prephenate dehydrogenase; Provisional
Probab=63.98  E-value=9.7  Score=18.67  Aligned_cols=54  Identities=15%  Similarity=0.234  Sum_probs=45.1

Q ss_pred             HHHHHHHHCCCEE---------EE--EHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHH
Q ss_conf             9999999879999---------99--427689999889951794653488165198553237155
Q gi|254780664|r   31 EFASRLLSRGIKI---------IS--TGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKI   84 (536)
Q Consensus        31 ~la~~L~~~g~~i---------is--TgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I   84 (536)
                      -|+++|...|+++         +|  .+-|...|+..|-...+|+.+--+++.+.|+|=-+||--
T Consensus        15 ~~~~~~~~~g~~v~i~k~D~ifiaVPI~~~~~iI~~~~~tiiDv~SVK~p~k~~~~~IIs~HPMF   79 (197)
T PRK06444         15 VLCSILDDNGLGVYIKKADHAFLSVPIDAALNYIESYDNNFVEISSVKWPFKKYSGKIVSIHPLF   79 (197)
T ss_pred             HHHHHHCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCEEEECCCC
T ss_conf             99999703784789727888999824588899998479738998863311777079879879987


No 53 
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=63.78  E-value=12  Score=18.05  Aligned_cols=42  Identities=21%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCC
Q ss_conf             5899997199599938987798899999987597799747854
Q gi|254780664|r  491 GIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRH  533 (536)
Q Consensus       491 ~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~Rh  533 (536)
                      ..++|.+.|...++-+|+.+- ++++++|.++++.++.-|.++
T Consensus        54 ~~~la~~lga~~~~~~~~d~~-~~I~~~A~~~~~t~IVlG~~~   95 (124)
T cd01987          54 ALRLAEELGAEVVTLPGDDVA-EAIVEFAREHNVTQIVVGKSR   95 (124)
T ss_pred             HHHHHHHCCCEEEEEECCCHH-HHHHHHHHHCCCCEEEECCCC
T ss_conf             999999859989999479989-999999998499899976898


No 54 
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=63.70  E-value=9.4  Score=18.78  Aligned_cols=40  Identities=23%  Similarity=0.217  Sum_probs=14.4

Q ss_pred             CCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCH
Q ss_conf             323715553553308898999999977998414999948888
Q gi|254780664|r   78 KTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPF  119 (536)
Q Consensus        78 KTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF  119 (536)
                      |..+|+.-=|+---||..+.+.++..++|+.  +-|.|++|.
T Consensus       103 ~~~~p~~IigVAC~~dL~~gi~~~~~~~ip~--~gV~l~~~g  142 (158)
T pfam01976       103 KEYRPKAIIGVACERDLNEGIQDLKKKGIPV--QGVLLLRPG  142 (158)
T ss_pred             HHCCCCEEEEEECHHHHHHHHHHHHCCCCCE--EEEECCCCC
T ss_conf             8729998999920489999999865089986--999759999


No 55 
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=63.29  E-value=12  Score=17.98  Aligned_cols=121  Identities=15%  Similarity=0.183  Sum_probs=57.2

Q ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHC-CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC---
Q ss_conf             2333343678810065057604776682101210-589888312221200116776424556727999615686565---
Q gi|254780664|r  221 VKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLV-QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGV---  296 (536)
Q Consensus       221 ~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~ql-~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGv---  296 (536)
                      +...+||-|+-=-=.+.+|.--+    .++.+.+ +|++|-+              +|     -.. +|=|.-||-.   
T Consensus        12 edi~~L~vGD~V~LsG~iyTaRD----~AHkrl~e~g~~lP~--------------dl-----~g~-~iyh~GP~~~k~~   67 (201)
T PRK08228         12 EDLADIRVGDIIYLTGTLVTCRD----VAHRRLIELGRPLPV--------------DL-----NGG-AIFHAGPIVRKNG   67 (201)
T ss_pred             HHHHHCCCCCEEEEEEEEEEEHH----HHHHHHHHCCCCCCC--------------CC-----CCC-EEEEECCCCCCCC
T ss_conf             99961889999999569998748----999999974999995--------------71-----337-6897468766799


Q ss_pred             ------CCCCHHHHHHHHHHHHCC-CCCCCEEEEE-CCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCC-CCCEEEE
Q ss_conf             ------452016899999985332-1320045554-275421457878865431111268798999885124-5531563
Q gi|254780664|r  297 ------ATADTLVEAYRRALSCDP-ISAFGGIIAF-NREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK-PSMRFLK  367 (536)
Q Consensus       297 ------A~~~~~~~Ay~~A~~~DP-~SAFGGIIa~-N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~K-KnlRil~  367 (536)
                            |.|.|  .+++..-..++ +..+|--+.+ -...+.++.+.+.+.=.=-..|++   .|-.++++. |..+.+-
T Consensus        68 ~~~~i~s~GPT--TS~RMd~y~~~~l~~~G~~~~IGKGgrs~~~~~a~~~~gaVYl~a~G---GaaaL~~~~Ik~v~~V~  142 (201)
T PRK08228         68 DKWEMVSVGPT--TSMRMEKFEKEFIEQTGVKLIVGKGGMGPGTEEGCQEFKALHVVFPA---GCAVLAATQVEEIEDAQ  142 (201)
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCEEEEECCC---HHHHHHHHHCCEEEEEE
T ss_conf             97234662686--05444677999998519269998587999999999976989997465---89999982042887870


Q ss_pred             CCC
Q ss_conf             167
Q gi|254780664|r  368 TSS  370 (536)
Q Consensus       368 ~~~  370 (536)
                      +..
T Consensus       143 ~~d  145 (201)
T PRK08228        143 WTD  145 (201)
T ss_pred             ECC
T ss_conf             134


No 56 
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=62.60  E-value=9.6  Score=18.69  Aligned_cols=106  Identities=26%  Similarity=0.343  Sum_probs=61.9

Q ss_pred             EEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHH-------CCCCCCCCCCHHH--HHHHH
Q ss_conf             99875456869999999987999999427689999889951794653488165-------1985532371555--35533
Q gi|254780664|r   20 LISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEI-------MGGRVKTLHPKIY--GGILS   90 (536)
Q Consensus        20 LiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEi-------l~GRVKTLHP~I~--ggIL~   90 (536)
                      +|.=.--+|=-.+|+.|.++|++.++-+   .+.+++|+       +|+++|.       ++.-.+-|+|.+.  .+|+-
T Consensus         4 ~ITGTPGvGKTT~~~~L~~lg~~~i~l~---el~~e~~~-------~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd   73 (180)
T COG1936           4 AITGTPGVGKTTVCKLLRELGYKVIELN---ELAKENGL-------YTEYDELRKSVIVDVDKLRKRLEELLREGSGIVD   73 (180)
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCEEEHH---HHHHHCCC-------EECCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEE
T ss_conf             9937999866879999998298466199---99986697-------1143776615886679999888887505884761


Q ss_pred             CCCCHHHHHHHHHCCCCCEEEEEE-ECCCHH---HHHCCCCCHHHHHHCCC--CCCHHHH
Q ss_conf             088989999999779984149999-488889---97317653112320023--3434699
Q gi|254780664|r   91 IRDNPAHMKFMQDHELESIDLVVV-NLYPFE---ESFCREDDYYTMVENID--IGGPSMI  144 (536)
Q Consensus        91 ~r~~~~~~~~l~~~~i~~IDlVvv-NLYPF~---~~v~~~~~~~~~IEnID--IGGpsmi  144 (536)
                           .|...|    .+.+||||| -..|..   +--.++-+.+.+-||++  |=|.-+.
T Consensus        74 -----~H~~hl----~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~  124 (180)
T COG1936          74 -----SHLSHL----LPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILI  124 (180)
T ss_pred             -----CHHHHC----CCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -----266621----787888999718989999999876998789887799999999999


No 57 
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=62.34  E-value=13  Score=17.86  Aligned_cols=38  Identities=29%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             HHHHHHHCCCC------EEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             58999971995------999389877988999999875977997
Q gi|254780664|r  491 GIVEAIKAGVT------AVIQPGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       491 ~ie~aa~~Gi~------aIiqPGGSirD~evI~aan~~gi~m~f  528 (536)
                      +|+++.-+|.+      -|+..|||++-++..+.|++|++.++-
T Consensus       165 sVdL~~lAGl~P~avicEilddg~~m~~~~~~~fA~~~~l~~is  208 (218)
T PRK05773        165 SLILAEAAGLPPSAVIAEMLGEGESLSKEEAKRYARELGIPLVE  208 (218)
T ss_pred             HHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             99999982999618999996699865689999999983997998


No 58 
>PRK08577 hypothetical protein; Provisional
Probab=61.67  E-value=7  Score=19.70  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             EEEEEEECCCC-HHHHHHHHHHCCCEEEEEHHHHHHHHHCCC----CEEEHHHHCCCCHHCCCCCCCCCCH
Q ss_conf             98998754568-699999999879999994276899998899----5179465348816519855323715
Q gi|254780664|r   18 TALISVHNKTG-VVEFASRLLSRGIKIISTGGTCQLLEEEGI----PVTSVFDITKFPEIMGGRVKTLHPK   83 (536)
Q Consensus        18 rALiSV~dKtg-l~~la~~L~~~g~~iisTgGTa~~l~~~gi----~v~~Vs~~TgfpEil~GRVKTLHP~   83 (536)
                      .--+-|.|+.| |-+++..|.++|+.|++|.-  ..|+.-++    -+.+||.-+--|+-|.++.|-|-|-
T Consensus        58 ei~l~v~DrpGvLA~is~~La~h~vdil~te~--~~l~r~e~ae~v~IvDvS~~~~~~~el~~~Lk~le~V  126 (135)
T PRK08577         58 ELELVVEDRPGVLAKISGLLAEHGVDILATEC--EELKRGELAECVIIVDVSKSDIDLKELEEELKALEEV  126 (135)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEHHH--HEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCE
T ss_conf             99999945975699999999874853111021--1000376100899998545779999999998724531


No 59 
>PRK07102 short chain dehydrogenase; Provisional
Probab=61.64  E-value=13  Score=17.77  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=29.6

Q ss_pred             EEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHC
Q ss_conf             36989987545686-999999998799999942768999988
Q gi|254780664|r   16 VKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEE   56 (536)
Q Consensus        16 ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~   56 (536)
                      ||++||.=.- +|| ..+|+.|.+.|++++-++-....|++.
T Consensus         1 MK~vlITGas-sGIG~a~A~~la~~G~~v~l~~R~~~~l~~~   41 (243)
T PRK07102          1 MKKILIIGAT-SDIARACARRYAAAGARLYLAARDTERLERI   41 (243)
T ss_pred             CCEEEEECCC-HHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             9979991574-5999999999998799899998988999999


No 60 
>PRK06842 fumarate hydratase; Provisional
Probab=59.93  E-value=14  Score=17.57  Aligned_cols=41  Identities=20%  Similarity=0.102  Sum_probs=18.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCC-CCCEEEECC
Q ss_conf             75421457878865431111268798999885124-553156316
Q gi|254780664|r  326 REVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK-PSMRFLKTS  369 (536)
Q Consensus       326 ~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~K-KnlRil~~~  369 (536)
                      ...+.++.+.+.+.=.=-..|++   .|-.+|++. |..+++-..
T Consensus       103 G~~s~~~~~a~~~~gaVYl~~~G---G~aALla~~Ik~~~~v~~~  144 (185)
T PRK06842        103 GARNDEVIESIKKNKAVYFGAIG---GAAALIAKSIKKSEIIAYE  144 (185)
T ss_pred             CCCCHHHHHHHHCCCEEEEECCC---CHHHHHHHHEEEEEEEECC
T ss_conf             87998999998629989998068---0999997435478789757


No 61 
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=59.74  E-value=14  Score=17.55  Aligned_cols=79  Identities=19%  Similarity=0.118  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHCCCEEEEEHH------HHHHHHHCCCCEEEHHHHCCCCHHC-----C-----CCCCCCCCHHHHHHHH
Q ss_conf             6869999999987999999427------6899998899517946534881651-----9-----8553237155535533
Q gi|254780664|r   27 TGVVEFASRLLSRGIKIISTGG------TCQLLEEEGIPVTSVFDITKFPEIM-----G-----GRVKTLHPKIYGGILS   90 (536)
Q Consensus        27 tgl~~la~~L~~~g~~iisTgG------Ta~~l~~~gi~v~~Vs~~TgfpEil-----~-----GRVKTLHP~I~ggIL~   90 (536)
                      -|..-++..|...|||.+-+|-      -...-.+.+..+.-+|.+.|.-+.+     +     |+-.  -|-+-||++.
T Consensus        18 ~G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad~igiSsl~G~~~~~~~~l~~~l~~~g~~d--i~vvvGG~i~   95 (137)
T PRK02261         18 VGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGD--ILLYVGGNLV   95 (137)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CEEEECCCCC
T ss_conf             88999999999789749846887999999999987399999971111266127999999999679999--9699836216


Q ss_pred             --CCCCHHHHHHHHHCCCC
Q ss_conf             --08898999999977998
Q gi|254780664|r   91 --IRDNPAHMKFMQDHELE  107 (536)
Q Consensus        91 --~r~~~~~~~~l~~~~i~  107 (536)
                        .-+-+.+.+.|+++|+.
T Consensus        96 i~~~dp~~~~~~L~~~Gv~  114 (137)
T PRK02261         96 VGKHDFEEVEKKFKEMGFD  114 (137)
T ss_pred             CCCCCCHHHHHHHHHCCCC
T ss_conf             7887839999999977979


No 62 
>TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250   The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota..
Probab=57.49  E-value=7.7  Score=19.43  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=19.3

Q ss_pred             HHHHCCCCCCHHH-HHHHHCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             2320023343469-9987401563135308999898898753
Q gi|254780664|r  131 TMVENIDIGGPSM-IRAAAKNHDYVTILTNPQDYPLFLAEMD  171 (536)
Q Consensus       131 ~~IEnIDIGGpsm-iRAAAKN~~~V~Vi~dp~dY~~~~~el~  171 (536)
                      |-|-+..|=|-+= -|+|||--         ..|..=++.|+
T Consensus         9 EKI~~ME~RGA~RI~R~AA~~L---------~~yA~K~Shln   41 (303)
T TIGR00511         9 EKIKSMEVRGAARIARAAAKAL---------KKYALKISHLN   41 (303)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHH---------HHHHHHHCCCC
T ss_conf             5553121232468999999999---------99987501012


No 63 
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component; InterPro: IPR011982    This entry identifies the reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase . This enzyme catalyses the first step (hydroxylation at the 3-position) in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. These reductases catalyse the reduction of free flavins by NADPH. The flavin is then utilised by the large subunit of the monooxygenase.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0051287 NAD binding, 0042537 benzene and derivative metabolic process.
Probab=57.41  E-value=3.3  Score=22.05  Aligned_cols=31  Identities=35%  Similarity=0.562  Sum_probs=28.1

Q ss_pred             HHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCC
Q ss_conf             9879999994276899998899517946534881
Q gi|254780664|r   37 LSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFP   70 (536)
Q Consensus        37 ~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~Tgfp   70 (536)
                      ...+|.||-|+|-|-..   ||.+|.|-.+|.-|
T Consensus         8 LaAaVnIiTT~G~AG~~---GIT~TAVCSVTDtP   38 (157)
T TIGR02296         8 LAAAVNIITTNGIAGKC---GITATAVCSVTDTP   38 (157)
T ss_pred             HHCCCEEEECCCCCCCE---EEEEEEEECCCCCC
T ss_conf             33464148739987723---22277751665887


No 64 
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=56.75  E-value=8.4  Score=19.14  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=16.1

Q ss_pred             EEEEEEEC--CCCHH----HHHHHHHHCCCE--EEEEH
Q ss_conf             98998754--56869----999999987999--99942
Q gi|254780664|r   18 TALISVHN--KTGVV----EFASRLLSRGIK--IISTG   47 (536)
Q Consensus        18 rALiSV~d--Ktgl~----~la~~L~~~g~~--iisTg   47 (536)
                      =|+||-|-  +.|++    +|++.|.++|.+  +++.+
T Consensus         2 I~~i~~ypP~~GGi~~~~~~La~~L~~~Gh~V~v~~~~   39 (366)
T cd03822           2 IALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVA   39 (366)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             89991899999838999999999998679989999588


No 65 
>TIGR00216 ispH_lytB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; InterPro: IPR003451   Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants .    LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood . Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response .; GO: 0019288 isopentenyl diphosphate biosynthetic process mevalonate-independent pathway.
Probab=56.26  E-value=7.9  Score=19.33  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=30.5

Q ss_pred             HCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf             519855323715553553308898999999977998414999948
Q gi|254780664|r   72 IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNL  116 (536)
Q Consensus        72 il~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNL  116 (536)
                      -.+++|=|+||-||        |+.=++.|++.|+..+|.|  |+
T Consensus        29 ~~g~~vyt~g~IvH--------N~~v~~~L~~~g~~~~D~~--~~   63 (354)
T TIGR00216        29 ELGKPVYTLGEIVH--------NPQVVERLREKGVVIFDVV--NL   63 (354)
T ss_pred             CCCCCEEEECCCCC--------CHHHHHHHHHCCCEEECCC--HH
T ss_conf             27897788576033--------7589999984797775220--00


No 66 
>pfam11009 DUF2847 Protein of unknown function (DUF2847). Some members in this bacterial family of proteins with unknown function are annotated as YtxJ, a putative general stress protein. This cannot be confirmed.
Probab=56.25  E-value=16  Score=17.15  Aligned_cols=52  Identities=17%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHH
Q ss_conf             27999615686565452016899999985332--1320045554275421457878
Q gi|254780664|r  283 AACVIVKHMNPCGVATADTLVEAYRRALSCDP--ISAFGGIIAFNREVDQEVAKEV  336 (536)
Q Consensus       283 Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP--~SAFGGIIa~N~~vd~~~A~~I  336 (536)
                      ..++|+||.+-||++.  ....-|++-+..++  +..|==.|.-+|++--..|+..
T Consensus        19 ~pv~ifKHSt~C~IS~--~a~~~~e~~~~~~~~~~~~y~ldv~~~R~vSn~IAe~~   72 (104)
T pfam11009        19 KPVLIFKHSTTCPISR--MALKQFEAFAEEDEEDLPVYYLDVQEYRDVSNEIAEKF   72 (104)
T ss_pred             CCEEEEECCCCCCCHH--HHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf             8289994399872109--99999998862552348879999641855789999995


No 67 
>TIGR02906 spore_CotS spore coat protein, CotS family; InterPro: IPR014255   Members of this entry include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologues that are more closely related to these two than to the spore coat proteins YutH (IPR014254 from INTERPRO) and YsxE (IPR014253 from INTERPRO). The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers..
Probab=56.19  E-value=5.2  Score=20.63  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             CCCEEEECCCCCCCCCCHHHCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCEEEEECC-CCCCCCCCCC-----------
Q ss_conf             065057604776682101210589888-312221200116776424556727999615-6865654520-----------
Q gi|254780664|r  234 QKAALYSTPEKKSGIAHAVLVQGKPLS-YNNINDLDAAFELVSEFRSQDCAACVIVKH-MNPCGVATAD-----------  300 (536)
Q Consensus       234 Q~Aa~Y~~~~~~~~~~~~~ql~GKeLS-YNNllD~daA~~lv~ef~~~~~Pa~vIvKH-~NPCGvA~~~-----------  300 (536)
                      +.+..|...+...-+ -.+.+.|+|++ |+|.-|+..|...+.+|...      ..+= .-|=|.-...           
T Consensus        59 k~g~~y~~~n~~ly~-l~ew~eGrec~P~~n~~dl~~~~~~La~~H~a------S~Gy~~~p~~~~~~~~~~Lgkw~~~f  131 (321)
T TIGR02906        59 KDGELYVKLNGDLYV-LTEWIEGRECDPFNNPIDLKKAAKALALLHEA------SKGYRVPPDGSKIRSKNELGKWPKQF  131 (321)
T ss_pred             CCCCCEEEECCEEEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCCCCCCCCHHHHHCHHHHHH
T ss_conf             888744654781899-84330264698888989999999999855650------66751077766410344302016799


Q ss_pred             -----HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCH
Q ss_conf             -----168999999853321320045554275421457878865431111268798
Q gi|254780664|r  301 -----TLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSE  351 (536)
Q Consensus       301 -----~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~  351 (536)
                           .+..-...|...-|.|.|.-+.  ...+|.-...  .+.-.|-+-.-+|.+
T Consensus       132 ~~~~~~l~~~k~~~~~~~~~~~Fd~~y--l~~~D~~l~~--~~~~~~~l~~S~Y~~  183 (321)
T TIGR02906       132 EKRLEELEKFKKIAKEKKYKDEFDKLY--LKEVDYFLER--AKKALELLNKSKYYD  183 (321)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHH--HHHHHHHHHCCCCHH
T ss_conf             999999999999986212257003689--9887899999--999999863277226


No 68 
>KOG3010 consensus
Probab=55.74  E-value=8.3  Score=19.18  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEEECCCC---------CHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEEC
Q ss_conf             5201689999998533213200455542754---------2145787886543111126879899988512455315631
Q gi|254780664|r  298 TADTLVEAYRRALSCDPISAFGGIIAFNREV---------DQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKT  368 (536)
Q Consensus       298 ~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v---------d~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~  368 (536)
                      ..+...+.|..|+-.=|.+=|--|-+++..-         +-.+|..|.++ +|=|||-|.+++-|++++++++.|....
T Consensus         4 ~~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t   82 (261)
T KOG3010           4 LFDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHT   82 (261)
T ss_pred             CCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHEEECCCHHHHHHHHCCCCCCCCCC
T ss_conf             002018888625889868999999842888645888456887114788875-4343130687999998611898620457


Q ss_pred             C
Q ss_conf             6
Q gi|254780664|r  369 S  369 (536)
Q Consensus       369 ~  369 (536)
                      +
T Consensus        83 ~   83 (261)
T KOG3010          83 P   83 (261)
T ss_pred             C
T ss_conf             8


No 69 
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds.  Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=55.61  E-value=16  Score=17.08  Aligned_cols=20  Identities=10%  Similarity=0.175  Sum_probs=9.1

Q ss_pred             HHHHHEECCCCHHHHHHHHC
Q ss_conf             43111126879899988512
Q gi|254780664|r  340 FTEAIIAPTLSEEAADVLAK  359 (536)
Q Consensus       340 F~EvIiAP~f~~eAleiL~~  359 (536)
                      =.|+|+...+.+++..++++
T Consensus       195 ~pd~v~~~~~~~~~~~~~~q  214 (346)
T cd06330         195 KPDAIFSSLWGGDLVTFVRQ  214 (346)
T ss_pred             CCCEEEEECCCHHHHHHHHH
T ss_conf             99999990664579999999


No 70 
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=55.13  E-value=15  Score=17.22  Aligned_cols=37  Identities=22%  Similarity=0.089  Sum_probs=19.8

Q ss_pred             CCCCCCCCHHHHHHHHCCCCH----HHHHHHHHCCCCCEEEEEE
Q ss_conf             855323715553553308898----9999999779984149999
Q gi|254780664|r   75 GRVKTLHPKIYGGILSIRDNP----AHMKFMQDHELESIDLVVV  114 (536)
Q Consensus        75 GRVKTLHP~I~ggIL~~r~~~----~~~~~l~~~~i~~IDlVvv  114 (536)
                      =|=||.-=++-|.++.+....    +|+.-|+.+|+.+   |+|
T Consensus        21 ~rgktfVIk~gG~~~~d~~l~~~~~~DialL~~lGik~---VlV   61 (284)
T CHL00202         21 FRGRIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKI---VVV   61 (284)
T ss_pred             HCCCEEEEEECCEEEECHHHHHHHHHHHHHHHHCCCEE---EEE
T ss_conf             68998999989666637548999999999999889979---998


No 71 
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=55.08  E-value=16  Score=17.02  Aligned_cols=51  Identities=18%  Similarity=0.115  Sum_probs=30.7

Q ss_pred             CEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHH--------------HHHHHCCCCEEEHHHH
Q ss_conf             136989987545686999999998799999942768--------------9999889951794653
Q gi|254780664|r   15 AVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTC--------------QLLEEEGIPVTSVFDI   66 (536)
Q Consensus        15 ~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa--------------~~l~~~gi~v~~Vs~~   66 (536)
                      |+-..--+++++.-|.+..+-.+++|+.. ++|||.              +..++.|+.+.+||+-
T Consensus        43 K~g~gt~~l~p~~~l~eKI~l~~~~~V~v-~~GGtlfE~a~~~~~~d~y~~~~~~lGf~~iEiSdg  107 (245)
T pfam02679        43 KFGWGTSALMPEDILKEKIDLAHEHGVYV-YTGGTLFEIAILQGKFDEYLRECKELGFDAIEISDG  107 (245)
T ss_pred             EECCCEEEECCHHHHHHHHHHHHHCCCEE-ECCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf             97687650178899999999999859948-479699999997383999999999869988995688


No 72 
>PRK01388 arginine deiminase; Provisional
Probab=54.94  E-value=13  Score=17.80  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=17.6

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCC
Q ss_conf             4870999736686855589999719959993898
Q gi|254780664|r  475 TNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGG  508 (536)
Q Consensus       475 ~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGG  508 (536)
                      .-|-|++.|-   -.-.-+.+.++||+.|--||.
T Consensus       359 ~Pg~Vv~Y~r---N~~Tn~~L~~~Gi~Vi~i~~s  389 (410)
T PRK01388        359 APGVVVGYDR---NTVTNTLLRKAGIEVITIPGS  389 (410)
T ss_pred             CCCEEEEECC---CHHHHHHHHHCCCEEEEECCH
T ss_conf             6988998568---789999999779989997024


No 73 
>PRK07985 oxidoreductase; Provisional
Probab=52.47  E-value=18  Score=16.73  Aligned_cols=45  Identities=16%  Similarity=0.150  Sum_probs=24.2

Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             720157788677613698998754568699999999879999994
Q gi|254780664|r    2 DCFHRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIIST   46 (536)
Q Consensus         2 ~~~~~~~~~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisT   46 (536)
                      ||=...--.+|+++=|+|||.=.-+-==...|+.|.+.|.+++-+
T Consensus        35 ~~~~~~~~~~GrL~gKvalVTGas~GIG~aiA~~lA~~GA~Vvi~   79 (294)
T PRK07985         35 DCGEKTYVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAIS   79 (294)
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             889878887777899979991726699999999999879999994


No 74 
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089   This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=52.32  E-value=14  Score=17.51  Aligned_cols=173  Identities=18%  Similarity=0.187  Sum_probs=71.6

Q ss_pred             HHHHHHHHHEE-CCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCC-CCCCCCCCCHH
Q ss_conf             88654311112-68798999885124553156316766777666402032102231012334531000-12467778688
Q gi|254780664|r  336 VIKVFTEAIIA-PTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKEL-TVVTKRSPTDQ  413 (536)
Q Consensus       336 I~~~F~EvIiA-P~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~~~~~~~-~vVT~~~pt~~  413 (536)
                      +.-.|.|.|-. +.|=+-|-++=++|| +-+|+...  ... ..---.| .-|-|.=+.- ..+ .=| ++-.=|--|-+
T Consensus       209 ~I~~Y~Eg~~DG~~Fl~~A~~~s~~KP-iv~lKsG~--s~~-GakAA~S-HTGaLAGs~~-~y~-aaf~q~G~iRa~~~~  281 (457)
T TIGR02717       209 VILLYLEGIKDGRKFLKTAKEISKKKP-IVVLKSGT--SEA-GAKAASS-HTGALAGSDE-AYD-AAFKQAGVIRADSIE  281 (457)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEECCC--CHH-HHHHHHH-CCCHHHHHHH-HHH-HHHCCCCEEEEECHH
T ss_conf             899971787041689999888630598-89993688--834-5676521-0231336689-999-874301438870177


Q ss_pred             HHHHHHHHHHHHHCC-CCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHH-----------HHCCCCCCCCCCEEEE
Q ss_conf             988899999986005-6677999968938997296888899999999998764-----------2001222234870999
Q gi|254780664|r  414 ELRDMKFAFKVVKHV-KSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNI-----------SAQADVKSMTNGSVIA  481 (536)
Q Consensus       414 e~~dL~FA~kv~K~v-kSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~-----------~~~~~~~~~~~g~vla  481 (536)
                      ||=|+.-..---.+. |.|-|+++-|+-  |.|.==+.|++..-+-+..-.++           ...........|+ +|
T Consensus       282 ELfd~A~~L~~~~~~~~g~~~~IiTN~G--G~Gvia~D~~~~~Gl~L~~~~~~t~~~L~~~LP~~as~~NPVD~~Gs-DA  358 (457)
T TIGR02717       282 ELFDLARLLSNQPLPPKGNRVAIITNAG--GPGVIATDACEEVGLELAELSEKTKEKLRNILPPEASIKNPVDVLGS-DA  358 (457)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEECCC--CHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEC-CC
T ss_conf             8899999983589899887699997896--16778765677749745558589999999747611477875125522-78


Q ss_pred             ECCCCCCCCHHHHHHHC----CCCEEEECCCCCC-HHHHHHHHH
Q ss_conf             73668685558999971----9959993898779-889999998
Q gi|254780664|r  482 SEAFYPFPDGIVEAIKA----GVTAVIQPGGSVR-DSEAITVAD  520 (536)
Q Consensus       482 SDAFFPF~D~ie~aa~~----Gi~aIiqPGGSir-D~evI~aan  520 (536)
                      .-.-  |.+.++++++-    ||=.|.+|.=.++ =+||-+.+=
T Consensus       359 ~~~~--Y~~~l~~v~eD~nVd~~~vv~~~~a~~~~~~~va~~~~  400 (457)
T TIGR02717       359 TAER--YAKALKIVAEDENVDGVVVVLTPTAMTDKPEEVAKGII  400 (457)
T ss_pred             CHHH--HHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             9899--99999998348888889996425302467999999887


No 75 
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=51.93  E-value=18  Score=16.67  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=26.5

Q ss_pred             EEEEECCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             799961568656545-201689999998533213200455542754
Q gi|254780664|r  284 ACVIVKHMNPCGVAT-ADTLVEAYRRALSCDPISAFGGIIAFNREV  328 (536)
Q Consensus       284 a~vIvKH~NPCGvA~-~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v  328 (536)
                      .-+|.-|.||-.+-- ..|+.+.-.+|...-     ||+|.+|.-.
T Consensus       184 ~PviaSHSN~~al~~h~RNl~D~qlkaI~~~-----gGvIgv~~~~  224 (313)
T COG2355         184 APVVASHSNARALVDHPRNLSDEQLKAIAET-----GGVIGVNFIP  224 (313)
T ss_pred             CCEEEECCCCHHCCCCCCCCCHHHHHHHHHC-----CCEEEEEEEH
T ss_conf             8668743772410588889889999999964-----9979998645


No 76 
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs.  Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=51.64  E-value=15  Score=17.23  Aligned_cols=44  Identities=16%  Similarity=0.233  Sum_probs=27.7

Q ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEE
Q ss_conf             3321320045554275421457878865431111268798999885124553156
Q gi|254780664|r  312 CDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFL  366 (536)
Q Consensus       312 ~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil  366 (536)
                      ++|..-|-|..  --+.|.+.|.++.+.-+         ..|+|-+++++..++-
T Consensus       345 ts~~ak~~ga~--hi~f~~~~a~e~A~~Iv---------~~AIe~fk~R~~~~v~  388 (613)
T cd01915         345 TSDVAKIPGAE--HIDFDPEEADESAKEII---------RMAIEAFKRRKKSKVY  388 (613)
T ss_pred             CCHHCCCCCCE--ECCCCCCCHHHHHHHHH---------HHHHHHHHHCCCCCCC
T ss_conf             55110078981--04778345899999999---------9999998716998577


No 77 
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764    Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.  AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=51.11  E-value=7.6  Score=19.43  Aligned_cols=17  Identities=18%  Similarity=0.477  Sum_probs=8.9

Q ss_pred             EEEECHHHHHHHHHHHH
Q ss_conf             35308999898898753
Q gi|254780664|r  155 TILTNPQDYPLFLAEMD  171 (536)
Q Consensus       155 ~Vi~dp~dY~~~~~el~  171 (536)
                      +++-||+-|..+++.|.
T Consensus        23 plL~~~~~f~~~id~l~   39 (175)
T TIGR01090        23 PLLNNPELFRFLIDLLV   39 (175)
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             01068778999999999


No 78 
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=51.09  E-value=19  Score=16.58  Aligned_cols=76  Identities=8%  Similarity=0.050  Sum_probs=38.7

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             31222120011677642455672799961568656545201689999998533213200455542754214578788654
Q gi|254780664|r  261 YNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVF  340 (536)
Q Consensus       261 YNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F  340 (536)
                      +-|..-.-|...-++-++..+ -.-|+=-|.+-.|+-+..+++++.++.-.---         +-.+++...|+.+.+..
T Consensus       261 tv~~~tsVAsvaq~MiwE~ie-m~PVv~~n~~llGiitR~dvlk~lq~~q~qpq---------vget~~d~I~~~l~e~~  330 (432)
T COG4109         261 TVRAKTSVASVAQMMIWEGIE-MLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQ---------VGETISDQIANNLSEKG  330 (432)
T ss_pred             EECCCCHHHHHHHHHHHCCCE-EEEEECCCCEEEEEEEHHHHHHHHHHHCCCCC---------CCCCHHHHHHHHHHHHC
T ss_conf             542522688998888764552-65688378618989889999999987512886---------55447799985331313


Q ss_pred             HHHHEE
Q ss_conf             311112
Q gi|254780664|r  341 TEAIIA  346 (536)
Q Consensus       341 ~EvIiA  346 (536)
                      .|.-+.
T Consensus       331 ~~~~~t  336 (432)
T COG4109         331 DEYGVT  336 (432)
T ss_pred             CCCCEE
T ss_conf             566248


No 79 
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=50.77  E-value=18  Score=16.66  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=36.1

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH-HHHHHHHHHHHEECCCCHHHHHHHHCCCCC
Q ss_conf             9996156865654520168999999853321320045554275421457-878865431111268798999885124553
Q gi|254780664|r  285 CVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVA-KEVIKVFTEAIIAPTLSEEAADVLAKKPSM  363 (536)
Q Consensus       285 ~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A-~~I~~~F~EvIiAP~f~~eAleiL~~KKnl  363 (536)
                      +=|.||.|-.- ++..-.         +|=+.|+|    +|-..+.+.+ +.|.+.=+=-+-||.|.|.-..+.--++.|
T Consensus       106 v~VaKHGnrs~-sSksGs---------aDvleaLG----v~l~~~~e~~~~~l~~~g~~FlfAp~~hp~~k~v~~vR~~L  171 (338)
T COG0547         106 VPVAKHGNRSV-SSKSGS---------ADVLEALG----VNLELSPEQAARALEETGIGFLFAPAYHPAMKHVAPVRKEL  171 (338)
T ss_pred             CCEEEECCCCC-CCCCCH---------HHHHHHCC----CCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             91776789877-887768---------99999759----98789999999999855948987611388999889999970


Q ss_pred             E
Q ss_conf             1
Q gi|254780664|r  364 R  364 (536)
Q Consensus       364 R  364 (536)
                      .
T Consensus       172 G  172 (338)
T COG0547         172 G  172 (338)
T ss_pred             C
T ss_conf             8


No 80 
>pfam09989 DUF2229 CoA enzyme activase uncharacterized domain (DUF2229). Members of this family include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=50.54  E-value=19  Score=16.52  Aligned_cols=95  Identities=20%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf             69999999987999999427689999889951794653488165198553237155535533088989999999779984
Q gi|254780664|r   29 VVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELES  108 (536)
Q Consensus        29 l~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~  108 (536)
                      ..-+..++.++|++++-|.-|-+.+-+.|+....-+  |=||      ||-.|              .|..+|.+.+.  
T Consensus        14 ~p~w~~fF~~LG~~VV~S~~t~k~~l~~G~~~~~~e--~C~P------~Kl~~--------------Ghv~~L~~kg~--   69 (218)
T pfam09989        14 YPFWFTFFTELGFEVVLSPPTNKEIYELGVETIPSE--TCYP------AKLFH--------------GHVADLLDKGV--   69 (218)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCC--CCHH------HHHHH--------------HHHHHHHHCCC--
T ss_conf             599999999859679989988399999886607887--4432------69988--------------99999986699--


Q ss_pred             EEEEEEECCCHHHHHCCCCC-HHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf             14999948888997317653-11232002334346999874015
Q gi|254780664|r  109 IDLVVVNLYPFEESFCREDD-YYTMVENIDIGGPSMIRAAAKNH  151 (536)
Q Consensus       109 IDlVvvNLYPF~~~v~~~~~-~~~~IEnIDIGGpsmiRAAAKN~  151 (536)
                       |-+   +||---.+.+... ...-.--.-.|-|-|+|++-.+-
T Consensus        70 -D~I---F~P~~~~~~~~~~~~~~~~CP~~~g~Pd~i~~~~~~~  109 (218)
T pfam09989        70 -DYI---FYPRIVSERKEKSEDNHYNCPKVQGLPEMIKNNIDLL  109 (218)
T ss_pred             -CEE---EECCCCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCC
T ss_conf             -999---9798845026656777432876566999999858632


No 81 
>KOG0832 consensus
Probab=50.45  E-value=19  Score=16.51  Aligned_cols=16  Identities=19%  Similarity=0.322  Sum_probs=7.7

Q ss_pred             HHHCCCCCCHHHHHHHHC
Q ss_conf             320023343469998740
Q gi|254780664|r  132 MVENIDIGGPSMIRAAAK  149 (536)
Q Consensus       132 ~IEnIDIGGpsmiRAAAK  149 (536)
                      .+|+|+|  +.|++|.+-
T Consensus        44 ~~~~~~v--~~L~~agvH   59 (251)
T KOG0832          44 VPELISV--EELFNAGVH   59 (251)
T ss_pred             CHHHCCH--HHHHHCCCC
T ss_conf             5655029--999741241


No 82 
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=49.66  E-value=20  Score=16.43  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=10.5

Q ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf             237155535533088989999999779984
Q gi|254780664|r   79 TLHPKIYGGILSIRDNPAHMKFMQDHELES  108 (536)
Q Consensus        79 TLHP~I~ggIL~~r~~~~~~~~l~~~~i~~  108 (536)
                      ||-|--|-|    | .|-..+.+-+.||+.
T Consensus        71 TLEPC~H~G----k-TpPC~~aIi~agI~r   95 (367)
T PRK10786         71 TLEPCSHHG----R-TPPCCDALIAAGVAR   95 (367)
T ss_pred             EECCCCCCC----C-CCHHHHHHHHHCCCE
T ss_conf             835734679----8-945999999828988


No 83 
>pfam02603 Hpr_kinase_N HPr Serine kinase N terminus. This family represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phospho-relay system in control of carbon catabolic repression in bacteria. This kinase in unusual in that it recognizes the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains.
Probab=49.52  E-value=20  Score=16.41  Aligned_cols=40  Identities=23%  Similarity=0.205  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             05898883122212001167764245567279996156865
Q gi|254780664|r  254 VQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPC  294 (536)
Q Consensus       254 l~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPC  294 (536)
                      ++-+|++|-+-++-+-....+..+-+.+ |.|+||=++.++
T Consensus        54 ~G~~E~~yl~~l~~e~r~~~l~~l~~~~-~P~iIvt~~~~~   93 (127)
T pfam02603        54 LGKTELSYLDQLTEEERKERLEKLFSYD-TPCLIVTRGLEP   93 (127)
T ss_pred             ECHHHHHHHHHCCHHHHHHHHHHHHCCC-CCEEEEECCCCC
T ss_conf             8579999999699999999999985759-988999799999


No 84 
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=48.79  E-value=20  Score=16.34  Aligned_cols=10  Identities=50%  Similarity=0.826  Sum_probs=4.1

Q ss_pred             EEECCCCCCC
Q ss_conf             9961568656
Q gi|254780664|r  286 VIVKHMNPCG  295 (536)
Q Consensus       286 vIvKH~NPCG  295 (536)
                      |-|.-..|||
T Consensus       144 V~VlR~aPCG  153 (215)
T pfam02593       144 VRVLRGAPCG  153 (215)
T ss_pred             EEEEECCCCC
T ss_conf             9898478986


No 85 
>pfam05683 Fumerase_C Fumarase C-terminus. This family consists of the C terminal region of several bacterial fumarate hydratase proteins (FumA and FumB). Fumarase, or fumarate hydratase (EC 4.2.1.2), is a component of the citric acid cycle. In facultative anaerobes such as Escherichia coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth.
Probab=48.73  E-value=20  Score=16.33  Aligned_cols=29  Identities=28%  Similarity=0.433  Sum_probs=19.2

Q ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             9997199599938987798899999987597
Q gi|254780664|r  494 EAIKAGVTAVIQPGGSVRDSEAITVADQHGI  524 (536)
Q Consensus       494 ~aa~~Gi~aIiqPGGSirD~evI~aan~~gi  524 (536)
                      +..+.|++++|--||  |.++++++|.+||-
T Consensus       116 ~l~~~G~~~~IGKG~--rs~~~~~a~~~~~a  144 (205)
T pfam05683       116 MLEKTGLLGMIGKGE--RGPAVIEAIKKHGA  144 (205)
T ss_pred             HHHHCCCEEEEECCC--CCHHHHHHHHHCCE
T ss_conf             998439379997477--99999999997490


No 86 
>pfam02401 LYTB LytB protein. The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Probab=48.54  E-value=12  Score=18.10  Aligned_cols=31  Identities=13%  Similarity=0.110  Sum_probs=26.4

Q ss_pred             HCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEE
Q ss_conf             519855323715553553308898999999977998414
Q gi|254780664|r   72 IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESID  110 (536)
Q Consensus        72 il~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~ID  110 (536)
                      -.+++|-||||-||        |+.-++.|++.|+..+|
T Consensus        26 ~~~~~vy~lG~iVH--------N~~vv~~L~~~Gv~~v~   56 (280)
T pfam02401        26 KSGGPVYVRGEIVH--------NRHVVNRLRERGAIFVE   56 (280)
T ss_pred             HCCCCEEEECCCCC--------CHHHHHHHHHCCCEEEC
T ss_conf             76997798377764--------98999999988399813


No 87 
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878    This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=48.01  E-value=6.1  Score=20.14  Aligned_cols=49  Identities=27%  Similarity=0.485  Sum_probs=24.8

Q ss_pred             CCCC--CCHHHHHHHCCCCEEEECC---CCCCHH--HHHHHHHHCCCEEEECCCCC
Q ss_conf             6868--5558999971995999389---877988--99999987597799747854
Q gi|254780664|r  485 FYPF--PDGIVEAIKAGVTAVIQPG---GSVRDS--EAITVADQHGIAMVFTGIRH  533 (536)
Q Consensus       485 FFPF--~D~ie~aa~~Gi~aIiqPG---GSirD~--evI~aan~~gi~m~fTg~Rh  533 (536)
                      |||=  |+=||.....|.+.||==|   |-+-++  ++|+.|-+.|+.-++|.|=.
T Consensus       292 fyPG~~p~il~~~~d~GykGiViEGTGLGHvs~~~ip~i~ra~d~Gv~V~MTSQCl  347 (413)
T TIGR02153       292 FYPGLDPEILEFLVDKGYKGIVIEGTGLGHVSEDWIPSIKRATDDGVPVVMTSQCL  347 (413)
T ss_pred             ECCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             43898888999985187159998337875552358999999875896899961143


No 88 
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=47.93  E-value=21  Score=16.24  Aligned_cols=304  Identities=17%  Similarity=0.216  Sum_probs=141.9

Q ss_pred             HHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHC------CCCCCHHHHHHHH-----------------------
Q ss_conf             99999779984149999488889973176531123200------2334346999874-----------------------
Q gi|254780664|r   98 MKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVEN------IDIGGPSMIRAAA-----------------------  148 (536)
Q Consensus        98 ~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEn------IDIGGpsmiRAAA-----------------------  148 (536)
                      .+.+.+.| .|-|+|.|==-|=-+.      ..+++.+      +--|||.|+|||-                       
T Consensus       162 ~~a~~~aG-aP~~li~~i~~ps~e~------t~~LM~h~~v~lilaTGg~~mVkaAysSGkPaigvG~GN~p~~Id~tAd  234 (862)
T PRK13805        162 LDAAVAAG-APKDIIQWIEEPSVEA------TNALMNHPGIALILATGGPGMVKAAYSSGKPALGVGAGNTPVYIDKTAD  234 (862)
T ss_pred             HHHHHHCC-CCCCCEEECCCCCHHH------HHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCEEECCCCCCEEEECCCC
T ss_conf             99999859-8914365538899899------9998569994479955977999999707998165578987769727889


Q ss_pred             -----------CCCCCC-------EEEECHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q ss_conf             -----------015631-------3530899989889875302345-6667889999999998-----742289999875
Q gi|254780664|r  149 -----------KNHDYV-------TILTNPQDYPLFLAEMDVNNGK-IPYNFRKKMARQAFSR-----TASYDTAICRWL  204 (536)
Q Consensus       149 -----------KN~~~V-------~Vi~dp~dY~~~~~el~~~~g~-~~~~~R~~lA~kAF~~-----ta~YD~~Ia~~l  204 (536)
                                 |.|.+=       .||++.+-|++++.+|+.+.+- .+.+..++|..-.|..     ...+=..=+.|+
T Consensus       235 i~~Aa~~Ii~sktFDng~iCasEq~viv~~~iyd~~~~~l~~~Gay~l~~eE~~kl~~~~~~~~~g~ln~~iVGk~a~~I  314 (862)
T PRK13805        235 IKRAVNDILLSKTFDNGMICASEQSVIVDDEIYDEVKEEFKSHGAYFLNKKELKKLEKVIFNKANGALNADIVGQSAYKI  314 (862)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH
T ss_conf             99999999862126688635677628862888999999999889798089999999987424889847825418789999


Q ss_pred             HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC--CC
Q ss_conf             3310121134432101233334367881006505760477668210121058988831222120011677642455--67
Q gi|254780664|r  205 ANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQ--DC  282 (536)
Q Consensus       205 ~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNNllD~daA~~lv~ef~~~--~~  282 (536)
                      .+..+-+.|+.-.+-.        +|-.   .     .....++.. +.|. --|++--.-|.+.|.+.+.++-+.  -.
T Consensus       315 A~~AGi~vP~~tkvLi--------~e~~---~-----vg~~~P~s~-EKLs-PVLa~y~~~d~~~A~~~~~~il~~~G~G  376 (862)
T PRK13805        315 AEMAGFKVPEDTKILI--------AEVK---G-----VGESEPLSH-EKLS-PVLAMYKAKSFEDAVEKAEKLVEFGGLG  376 (862)
T ss_pred             HHHCCCCCCCCCEEEE--------EECC---C-----CCCCCCCCC-CCCC-CEEEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf             9982998898975999--------9677---7-----788887631-4014-0059989589999999999999717998


Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHC-----CCCCCCEEEEECC-----------------CCCHHHHHHHHH--
Q ss_conf             2799961568656545201689999998533-----2132004555427-----------------542145787886--
Q gi|254780664|r  283 AACVIVKHMNPCGVATADTLVEAYRRALSCD-----PISAFGGIIAFNR-----------------EVDQEVAKEVIK--  338 (536)
Q Consensus       283 Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~D-----P~SAFGGIIa~N~-----------------~vd~~~A~~I~~--  338 (536)
                      .+|+|  |++      .+.....|......-     .-|+|||+=.++.                 .-|--+.+.+.+  
T Consensus       377 HT~~I--Hs~------d~~~i~~fa~~~p~~RilVN~p~s~g~~G~~~n~l~pslTLGCGs~Ggns~s~Nv~~~hllNik  448 (862)
T PRK13805        377 HTAVI--YTN------DDELVKEFGLRMKAARILVNTPSSQGGIGDLYNKLAPSLTLGCGSWGGNSISENVGPKHLLNIK  448 (862)
T ss_pred             CEEEE--ECC------CHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             62677--659------9999999985397538997278667654523358885612315688898676788788876455


Q ss_pred             ---------HHHHHHEECCCCHHHHHHHHCCCC-CEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCC--CCCCCCC
Q ss_conf             ---------543111126879899988512455-3156316766777666402032102231012334531--0001246
Q gi|254780664|r  339 ---------VFTEAIIAPTLSEEAADVLAKKPS-MRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDN--KELTVVT  406 (536)
Q Consensus       339 ---------~F~EvIiAP~f~~eAleiL~~KKn-lRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~~~~--~~~~vVT  406 (536)
                               +.+-|=----|++.++..|++-++ -|.+.+... .         -+.-|++-+-.+. ++.  -++.+-.
T Consensus       449 rva~rr~n~~wfkvP~~iyf~~~~~~~l~~~~~~kralIVTD~-~---------~~~~G~vd~v~~~-L~~~gi~~~vFd  517 (862)
T PRK13805        449 TVAKRRENMQWFKLPKKIYFERGSLPYLLDEPGKKRAFIVTDR-G---------MVELGYVDKVTDV-LRANGVETEVFS  517 (862)
T ss_pred             HHHHHCCCCEEEECCCEEEECCCHHHHHHHCCCCCEEEEECCH-H---------HHHCCCHHHHHHH-HHHCCCEEEEEC
T ss_conf             7987634780553697467567829999866899779998785-1---------8767889999999-998698399966


Q ss_pred             C--CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHH
Q ss_conf             7--778688988899999986005667799996893899729688889999999
Q gi|254780664|r  407 K--RSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFA  458 (536)
Q Consensus       407 ~--~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA  458 (536)
                      +  -.|+.+....-   ....+--+        -...|++|.|  |-+|+.|..
T Consensus       518 ~V~pdPt~~~V~~G---~~~~~~~~--------~D~IIalGGG--S~iDaAKai  558 (862)
T PRK13805        518 EVEPDPTLSTVRKG---AELMRSFK--------PDTIIALGGG--SPMDAAKIM  558 (862)
T ss_pred             CCCCCCCHHHHHHH---HHHHHHCC--------CCEEEEECCC--CHHHHHHHH
T ss_conf             98999397999999---99998649--------9999994783--488999999


No 89 
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN.  NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively.  NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.92  E-value=14  Score=17.44  Aligned_cols=32  Identities=13%  Similarity=0.084  Sum_probs=14.0

Q ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             58999971995999389877988999999875977997
Q gi|254780664|r  491 GIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       491 ~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~f  528 (536)
                      --+.+.+.++--+|  |+| +..   ..|.+.|++++-
T Consensus       348 l~~~i~~~~~Dlii--g~s-~~~---~~a~rlGiP~~~  379 (410)
T cd01968         348 LKKLLKEKKADLLV--AGG-KER---YLALKLGIPFCD  379 (410)
T ss_pred             HHHHHHHCCCCEEE--ECC-CHH---HHHHHHCCCEEE
T ss_conf             99998656999999--577-324---889980898898


No 90 
>pfam07799 DUF1643 Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long.
Probab=47.71  E-value=11  Score=18.28  Aligned_cols=49  Identities=22%  Similarity=0.295  Sum_probs=22.2

Q ss_pred             HHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf             99997799841499994888899731765311232002334346999874015
Q gi|254780664|r   99 KFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNH  151 (536)
Q Consensus        99 ~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~  151 (536)
                      .-.+..|+.  .++++|||||-.|-  +..+...-.-|..---.-|+.++|..
T Consensus        39 ~fa~~~Gyg--g~~~~NLfa~rst~--P~~L~~~~dpig~~Nd~~i~~~~~~a   87 (135)
T pfam07799        39 RFARAWGYG--GLVVVNLFAWRATD--PKDLRRAADPVGPENDAHLLRAAKWA   87 (135)
T ss_pred             HHHHHCCCC--EEEEEECCCCCCCC--HHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf             999877998--49998513121699--89997564887876999999998713


No 91 
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA; InterPro: IPR014330   This small protein has a single S4 domain (IPR002942 from INTERPRO); it is also found in bacterial S4 ribosomal proteins, some pseudouridine synthases and tyrosyl-tRNA synthetases.   The S4 domain may bind RNA. Members of this protein are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members that are not near recF are found instead near dnaA and/or dnaN, the usual neighbours of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage..
Probab=47.54  E-value=6.4  Score=19.98  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             CCCHHHHHHHHHHCCCEEEEEHHHHH-HHHHCCCCEEE
Q ss_conf             56869999999987999999427689-99988995179
Q gi|254780664|r   26 KTGVVEFASRLLSRGIKIISTGGTCQ-LLEEEGIPVTS   62 (536)
Q Consensus        26 Ktgl~~la~~L~~~g~~iisTgGTa~-~l~~~gi~v~~   62 (536)
                      +|-.+.|-++|...  .+|+|||.|| ||.++.+-|..
T Consensus         5 ~tEyITLgQlLK~~--~~i~sGG~AK~fL~e~~V~vNG   40 (60)
T TIGR02988         5 KTEYITLGQLLKEL--GIIDSGGQAKWFLQENEVLVNG   40 (60)
T ss_pred             CCCEECHHHHHHHH--HHHCCHHHHHHHHHCCCEEECC
T ss_conf             43416276786688--5622825788987069555478


No 92 
>pfam00762 Ferrochelatase Ferrochelatase.
Probab=46.09  E-value=22  Score=16.05  Aligned_cols=15  Identities=7%  Similarity=0.257  Sum_probs=7.3

Q ss_pred             HHEECCCCHHHHHHH
Q ss_conf             111268798999885
Q gi|254780664|r  343 AIIAPTLSEEAADVL  357 (536)
Q Consensus       343 vIiAP~f~~eAleiL  357 (536)
                      +|+.|+|..|-+|.|
T Consensus       255 ~v~p~gFv~D~lETl  269 (312)
T pfam00762       255 VVVPIGFVSDHLETL  269 (312)
T ss_pred             EEECCCCCCCCHHHH
T ss_conf             998884544246769


No 93 
>PRK06180 short chain dehydrogenase; Provisional
Probab=45.94  E-value=22  Score=16.03  Aligned_cols=150  Identities=20%  Similarity=0.214  Sum_probs=77.6

Q ss_pred             CCEEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             6136989987545686-999999998799999942768999988995179465348816519855323715553553308
Q gi|254780664|r   14 IAVKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        14 ~~ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r   92 (536)
                      -.+|.+||.=.- +|| ..+|+.|.+.|+.++.++-....|++.             .+..++++..+.        .+-
T Consensus         2 ~~~KvvlITGas-sGIG~aiA~~l~~~G~~Vi~~~R~~~~l~~l-------------~~~~~~~~~~~~--------~Dv   59 (277)
T PRK06180          2 ASMKTWLITGVS-SGFGRALAQAALAAGHRVVGTVRSAAARRDF-------------EALHPGRALARV--------LDV   59 (277)
T ss_pred             CCCCEEEECCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------------HHHCCCCEEEEE--------EEC
T ss_conf             999889991787-3999999999998799999998999999999-------------986799579999--------837


Q ss_pred             CCHHHHHHHHH---CCCCCEEEEEEEC-----CCHHHHHCCCCCHHHHHHCCC--C-CCHHHHHHHHC-----CCCCCEE
Q ss_conf             89899999997---7998414999948-----888997317653112320023--3-43469998740-----1563135
Q gi|254780664|r   93 DNPAHMKFMQD---HELESIDLVVVNL-----YPFEESFCREDDYYTMVENID--I-GGPSMIRAAAK-----NHDYVTI  156 (536)
Q Consensus        93 ~~~~~~~~l~~---~~i~~IDlVvvNL-----YPF~~~v~~~~~~~~~IEnID--I-GGpsmiRAAAK-----N~~~V~V  156 (536)
                      .+++..+.+-+   ....+||++|.|=     =||+++     +.++.-+.+|  . |---|.|++..     ..-++..
T Consensus        60 td~~~v~~~v~~~~~~~G~iDvLVNNAG~~~~~~~e~~-----~~~~~~~~~~vN~~g~~~~~~a~lp~m~~~~~G~Ivn  134 (277)
T PRK06180         60 TDFDAIDGVVADAEATVGPIDVLVNNAGYGHEGAIEES-----PLAEMRRQFEVNVFGAVAMIKAVLPGMRARRRGHIVN  134 (277)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHC-----CHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEE
T ss_conf             99999999999999981998699989977888863339-----9999999998853776544200488889658965775


Q ss_pred             EECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             308999898898753023456667889999999998742289
Q gi|254780664|r  157 LTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDT  198 (536)
Q Consensus       157 i~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~  198 (536)
                      +++..-+..       .-| .+.=.--+.|..+|..+-+.+.
T Consensus       135 isS~ag~~~-------~p~-~~~Y~aSK~Al~~lt~sLa~El  168 (277)
T PRK06180        135 ITSMGGLIT-------MPG-IAYYCGSKFALEGISEALAKEV  168 (277)
T ss_pred             ECCHHHCCC-------CCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             354665257-------999-8279999999999999999984


No 94 
>pfam07905 PucR Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.
Probab=44.56  E-value=23  Score=15.89  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CCHHHHHHHCCCCE-EEECCCC--CCHHHHHHHHHHCCCEEEECCC
Q ss_conf             55589999719959-9938987--7988999999875977997478
Q gi|254780664|r  489 PDGIVEAIKAGVTA-VIQPGGS--VRDSEAITVADQHGIAMVFTGI  531 (536)
Q Consensus       489 ~D~ie~aa~~Gi~a-IiqPGGS--irD~evI~aan~~gi~m~fTg~  531 (536)
                      .+=|+.+++.|+.+ +|..|--  -=.+++|++||+++++++....
T Consensus        61 ~~~i~~L~~~g~agL~i~~g~~~~~iP~~~i~~a~~~~~Pli~iP~  106 (122)
T pfam07905        61 REFVRELAEAGAAGLGIKTGRYIPEIPEELIAAANRLGLPLIELPR  106 (122)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             9999999978964999942555466999999999974997799459


No 95 
>pfam00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region.
Probab=44.42  E-value=24  Score=15.87  Aligned_cols=83  Identities=22%  Similarity=0.301  Sum_probs=56.1

Q ss_pred             HHHHHHHHHCC---CCC----EEEEEECCEEEEECCC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             99999986005---667----7999968938997296-----88889999999999876420012222348709997366
Q gi|254780664|r  418 MKFAFKVVKHV---KSN----AVVYAKDGRTVGIGSG-----QTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAF  485 (536)
Q Consensus       418 L~FA~kv~K~v---kSN----AIv~ak~~~tiGiGaG-----Q~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAF  485 (536)
                      |..|....+..   .+|    |+++..|+.+|+.|.-     +..-+.|-..|+.+|.....    ...++|+.+.+- -
T Consensus         8 m~~A~~~A~~a~~~~~~~~VGaviv~~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~----~~~~~~~~lyvT-~   82 (104)
T pfam00383         8 MRLALEAAKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERNAIRNAGRLGE----GIKLEGATLYVT-L   82 (104)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECEEECCCCCCHHHHHHHHHHHHHHCC----CCCCCCCEEECC-C
T ss_conf             99999999866798899978999992799799988570756999630189999999999669----971126323269-8


Q ss_pred             CCCCCHHHHHHHCCCCEEEE
Q ss_conf             86855589999719959993
Q gi|254780664|r  486 YPFPDGIVEAIKAGVTAVIQ  505 (536)
Q Consensus       486 FPF~D~ie~aa~~Gi~aIiq  505 (536)
                      .|=+-+-..+..+||+-|+-
T Consensus        83 ePC~mC~~ai~~~gi~~Vvy  102 (104)
T pfam00383        83 EPCGMCRQAIIESGIKKVVF  102 (104)
T ss_pred             CCHHHHHHHHHHHCCCEEEE
T ss_conf             97699999999969199998


No 96 
>LOAD_Ccd2 consensus
Probab=43.38  E-value=24  Score=15.76  Aligned_cols=54  Identities=17%  Similarity=0.185  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHCCCCCEEEEEEECCCHHHHHCC-CCCHHHHHHCCCCCCHHHHHHHHCCCCCCE
Q ss_conf             98999999977998414999948888997317-653112320023343469998740156313
Q gi|254780664|r   94 NPAHMKFMQDHELESIDLVVVNLYPFEESFCR-EDDYYTMVENIDIGGPSMIRAAAKNHDYVT  155 (536)
Q Consensus        94 ~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~-~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~  155 (536)
                      ..+.++.+.++|++   +.+|.     ..... +-+.++++|.++|+|+.-+...++....|.
T Consensus        59 ~~~~~~~~~~~Gv~---i~vC~-----~~~~~rgi~~~dl~~gv~i~g~~~l~~~~~~~d~vi  113 (114)
T LOAD_Ccd2        59 LADLLKLAKEYGVK---VYVCG-----MSLDARGLKEDDLIEGVDIAGVAALAELLLEGDAVI  113 (114)
T ss_pred             HHHHHHHHHHCCCE---EEEEH-----HHHHHCCCCHHHCCCCCEEECHHHHHHHHHHCCEEE
T ss_conf             99999999976987---99879-----999884999788647778959999999999779212


No 97 
>pfam11152 DUF2930 Protein of unknown function (DUF2930). This family of proteins has no known function.
Probab=43.35  E-value=24  Score=15.76  Aligned_cols=92  Identities=12%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHHHHHHH-HCCCCCEEEEEECCEEEEE-CCCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             778688988899999986-0056677999968938997-296888--899999999998764200122223487099973
Q gi|254780664|r  408 RSPTDQELRDMKFAFKVV-KHVKSNAVVYAKDGRTVGI-GSGQTS--RVDSTRFAAIKAHNISAQADVKSMTNGSVIASE  483 (536)
Q Consensus       408 ~~pt~~e~~dL~FA~kv~-K~vkSNAIv~ak~~~tiGi-GaGQ~s--RVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSD  483 (536)
                      ...++...++|..||... ..+-.-++++..+++++=- |.-...  -+..-.+.- ++.+         .-+-..|+--
T Consensus        71 ~~l~~~~k~ELAWas~~LLt~T~a~svlV~~~g~~llrRG~~~~~~~~~~pG~i~~-r~~~---------~~~~~~Lvn~  140 (196)
T pfam11152        71 PNLSEALKEELAWASHLLLTATPAASVLVYWDGQVLLRRGILGPPVSKFEPGEICK-RAME---------TQQLVYLVNL  140 (196)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHH-HHHH---------HCCCCCHHHC
T ss_conf             87789999999999999986377608999989999996203579877678679999-9986---------0564554443


Q ss_pred             CCCCCCCHHHHHHHCCCCEEEECCCC
Q ss_conf             66868555899997199599938987
Q gi|254780664|r  484 AFYPFPDGIVEAIKAGVTAVIQPGGS  509 (536)
Q Consensus       484 AFFPF~D~ie~aa~~Gi~aIiqPGGS  509 (536)
                      .+||-++..+..-..==.-++||.|.
T Consensus       141 ~lyPGr~Ef~~lP~ntqsV~vqPlg~  166 (196)
T pfam11152       141 KLYPGRIEFDYLPPNTQAVIVQPLGN  166 (196)
T ss_pred             CCCCCHHHHHHCCCCCCEEEEEECCC
T ss_conf             63798577762699998699998689


No 98 
>TIGR00160 MGSA methylglyoxal synthase; InterPro: IPR004363   Methylglyoxal synthase (MGS)  catalyzes the conversion of dihydroxyacetone phosphate to methylglyoxal and phosphate:  Glycerone phosphate = methylglyoxal + phosphate  It provides bacteria with an alternative to triosephosphate isomerase for metabolizing dihydroxyacetone phosphate. MGS is a small protein of about 13 to 17 kDa. An aspartate residue is involved in the catalytic mechanism. Methylglyoxal synthase contains a domain shared by other enzymes. Other proteins containing this domain include purine biosynthesis protein PurH and carbamoyl phosphate synthetase.; GO: 0008929 methylglyoxal synthase activity, 0019242 methylglyoxal biosynthetic process, 0005737 cytoplasm.
Probab=43.20  E-value=18  Score=16.80  Aligned_cols=48  Identities=27%  Similarity=0.442  Sum_probs=34.1

Q ss_pred             EEEEEEEE-CCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHH
Q ss_conf             69899875-456869999999987--99999942768999988-99517946
Q gi|254780664|r   17 KTALISVH-NKTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVF   64 (536)
Q Consensus        17 krALiSV~-dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs   64 (536)
                      |=|||-== -|..|+.|.+.-.+.  .+.+|+||-|-..++++ |+.|..+-
T Consensus         4 ~IALiAHD~kK~~Lvnfv~~h~~~L~~h~LyATGTTG~~i~~~TGL~i~~~~   55 (143)
T TIGR00160         4 KIALIAHDKKKQDLVNFVQQHKELLKKHDLYATGTTGELIERATGLAIEKLL   55 (143)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCEECCC
T ss_conf             7422235134688999999989875416455316662776652077011005


No 99 
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=43.18  E-value=8.4  Score=19.12  Aligned_cols=69  Identities=20%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             HHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32002334346999874015631353089998988987530234566--678899999999987422899998
Q gi|254780664|r  132 MVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIP--YNFRKKMARQAFSRTASYDTAICR  202 (536)
Q Consensus       132 ~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~~g~~~--~~~R~~lA~kAF~~ta~YD~~Ia~  202 (536)
                      +|=+||+-|..-+|..  .+.-++|...|.+.+.+...|..-.....  .+.|..-|.+-+++...||..|-|
T Consensus        95 vvl~id~~g~~~lk~~--~~~~~~IfI~pps~~~L~~RL~~Rg~~~~~~i~~Rl~~a~~e~~~~~~fD~vIvN  165 (182)
T pfam00625        95 CILDVDIQGVKQLRKA--ELSPISVFIKPPSLKVLQRRLKGRGTEQEEKINKRMEAAEQEFQHYAEFDYIIVN  165 (182)
T ss_pred             EEEEECHHHHHHHHHH--CCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf             9999728999999874--9574899993879999999998148888999999999999997348619999989


No 100
>PRK08251 short chain dehydrogenase; Provisional
Probab=43.17  E-value=25  Score=15.74  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             EEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHC
Q ss_conf             6989987545686-999999998799999942768999988
Q gi|254780664|r   17 KTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEE   56 (536)
Q Consensus        17 krALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~   56 (536)
                      |++||.=... || .++|+.|.+.|+.++-++-....|++.
T Consensus         3 K~vlITGAss-GIG~alA~~la~~G~~v~l~~r~~~~l~~~   42 (248)
T PRK08251          3 QKILITGASS-GLGAGMAREFAAKGRDLALCARRTDRLEEL   42 (248)
T ss_pred             CEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             9899947863-999999999998799899998988899999


No 101
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=43.04  E-value=14  Score=17.60  Aligned_cols=15  Identities=27%  Similarity=0.313  Sum_probs=7.6

Q ss_pred             HHHHCCCCCCEEEEC
Q ss_conf             987401563135308
Q gi|254780664|r  145 RAAAKNHDYVTILTN  159 (536)
Q Consensus       145 RAAAKN~~~V~Vi~d  159 (536)
                      -||-|-|+-+.|+.|
T Consensus        83 ~Aa~kGYk~Iiv~Pe   97 (527)
T TIGR01137        83 VAAIKGYKCIIVLPE   97 (527)
T ss_pred             HHHHCCCEEEEECCC
T ss_conf             995268639998687


No 102
>pfam02602 HEM4 Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyses the reaction: Hydroxymethylbilane <= uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.
Probab=42.65  E-value=25  Score=15.69  Aligned_cols=41  Identities=17%  Similarity=0.104  Sum_probs=17.5

Q ss_pred             CCHHHHHHHHHHHHHHHEE--CCCCHHHH-HHHHC-CCCCEEEEC
Q ss_conf             4214578788654311112--68798999-88512-455315631
Q gi|254780664|r  328 VDQEVAKEVIKVFTEAIIA--PTLSEEAA-DVLAK-KPSMRFLKT  368 (536)
Q Consensus       328 vd~~~A~~I~~~F~EvIiA--P~f~~eAl-eiL~~-KKnlRil~~  368 (536)
                      |-..||+.+.+..+.+..-  .+|+.+.| +.+.+ -++.|++..
T Consensus        76 vG~~Ta~~l~~~G~~~~~~~~~~~~~~~L~~~i~~~~~~~~il~~  120 (229)
T pfam02602        76 VGPKTARALREAGLTPDFVPSAEGTAEGLAEELAELLAGKRVLLL  120 (229)
T ss_pred             ECHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             378999999984999608798888999999977642689869997


No 103
>PRK06128 oxidoreductase; Provisional
Probab=41.55  E-value=26  Score=15.57  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=16.9

Q ss_pred             CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEE
Q ss_conf             78867761369899875456869999999987999999
Q gi|254780664|r    8 DGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIIS   45 (536)
Q Consensus         8 ~~~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iis   45 (536)
                      -..+||++=|+|||.=...-==...|+.|.+.|..++-
T Consensus        47 y~g~grL~GKvAlVTGgssGIG~AiA~~lA~eGA~Vvi   84 (300)
T PRK06128         47 YKGFGRLQGRKALITGADSGIGRATAIAFAREGADIVL   84 (300)
T ss_pred             CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             98888789995899173669999999999986999999


No 104
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357   Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family.   The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=41.38  E-value=8.6  Score=19.04  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             CCCCCHHHHHHHH----------------------------------CCCCCC-------EEEECHHHHHHHHHHHHCC
Q ss_conf             2334346999874----------------------------------015631-------3530899989889875302
Q gi|254780664|r  136 IDIGGPSMIRAAA----------------------------------KNHDYV-------TILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus       136 IDIGGpsmiRAAA----------------------------------KN~~~V-------~Vi~dp~dY~~~~~el~~~  173 (536)
                      |=-||++|+|||=                                  |-|.+=       .|||.+..-+.|++||+..
T Consensus       192 lATGG~aMVkAAYSSG~PAIGVGpGNgPAyIe~~Anv~~Av~~Il~SKtFDnGtICASEQSvivE~~n~~aVv~Elk~Q  270 (528)
T TIGR02518       192 LATGGEAMVKAAYSSGTPAIGVGPGNGPAYIERTANVKKAVRKILDSKTFDNGTICASEQSVIVEKCNKDAVVEELKKQ  270 (528)
T ss_pred             EECCCHHHHHHECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHC
T ss_conf             9607702533000377862121777860101156787899988740256677616531350686157726899999852


No 105
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.35  E-value=26  Score=15.55  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHEECCCCHHHHHHH-H--CCCCCEEEEC
Q ss_conf             7878865431111268798999885-1--2455315631
Q gi|254780664|r  333 AKEVIKVFTEAIIAPTLSEEAADVL-A--KKPSMRFLKT  368 (536)
Q Consensus       333 A~~I~~~F~EvIiAP~f~~eAleiL-~--~KKnlRil~~  368 (536)
                      .+...+.=++.+|-||.-.|--+-+ .  ++.++.++.+
T Consensus       106 ~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~l  144 (256)
T PRK13111        106 AADAAEAGVDGLIIPDLPPEEAEEFRAAAKKHGIDLIFL  144 (256)
T ss_pred             HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             999997599779816999788899999999759808999


No 106
>TIGR01158 SUI1_rel translation initation factor SUI1, putative; InterPro: IPR005872    This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.; GO: 0003743 translation initiation factor activity, 0006412 translation.
Probab=41.25  E-value=7.1  Score=19.68  Aligned_cols=29  Identities=28%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             EEEEEECCC--CHHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf             899875456--869999999987999999427689
Q gi|254780664|r   19 ALISVHNKT--GVVEFASRLLSRGIKIISTGGTCQ   51 (536)
Q Consensus        19 ALiSV~dKt--gl~~la~~L~~~g~~iisTgGTa~   51 (536)
                      -+|+=-|.+  +|.+||+.|.+    ..+||||+|
T Consensus        51 TiI~Gld~~~~~L~~LAk~LK~----~cacGGTvK   81 (111)
T TIGR01158        51 TIIEGLDLSDIDLKELAKELKS----KCACGGTVK   81 (111)
T ss_pred             EEEECCCCCHHHHHHHHHHHHH----HHCCCCCEE
T ss_conf             8861578336789999998778----846897403


No 107
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family; InterPro: IPR014228   Members of this entry include YlxY, and are related to IPR014132 from INTERPRO, which represents a subset of the polysaccharide deacetylase family found in a species if, and only if, the species forms endospores e.g. Bacillus subtilis or Clostridium tetani. Proteins in this entry are likewise restricted to spore-formers, but are not universally found among endospore-forming species..
Probab=41.24  E-value=26  Score=15.54  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=27.1

Q ss_pred             HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             8999971995999389877988999999875977997
Q gi|254780664|r  492 IVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       492 ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~f  528 (536)
                      |+.+....++=..=|.||=|| +||+.|.+++|-=|+
T Consensus       170 i~a~i~~~pkWFAPPSGSF~d-~Vv~~Aad~~M~Tim  205 (269)
T TIGR02873       170 IEATIGVKPKWFAPPSGSFRD-EVVQIAADLQMGTIM  205 (269)
T ss_pred             HHHHHCCCCCEECCCCCCHHH-HHHHHHHHCCCCEEE
T ss_conf             999857987040288876415-778778746896388


No 108
>PRK06953 short chain dehydrogenase; Provisional
Probab=40.75  E-value=27  Score=15.49  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=28.7

Q ss_pred             EEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf             3698998754568699999999879999994276899998
Q gi|254780664|r   16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEE   55 (536)
Q Consensus        16 ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~   55 (536)
                      ||++||.=..+-==..+|+.|.+.|+.++.++-....+.+
T Consensus         1 MK~~LVTGas~GIG~a~a~~la~~G~~V~~~~R~~~~l~~   40 (222)
T PRK06953          1 MKTVLIVGASRGIGLEFVRQYRADGWRVIATARDAAGLAA   40 (222)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             9999994757299999999999888999999688888999


No 109
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=40.62  E-value=26  Score=15.53  Aligned_cols=46  Identities=24%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             CEEEEEEEEECC---CCHHHHHHHHHHCC-CEEEEEHHHHHHHHHCCCCE
Q ss_conf             136989987545---68699999999879-99999427689999889951
Q gi|254780664|r   15 AVKTALISVHNK---TGVVEFASRLLSRG-IKIISTGGTCQLLEEEGIPV   60 (536)
Q Consensus        15 ~ikrALiSV~dK---tgl~~la~~L~~~g-~~iisTgGTa~~l~~~gi~v   60 (536)
                      +-||-|+=|--.   ..+.|++..+.+.. +.+++|+++..-+.+.|+.+
T Consensus        34 kAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~   83 (170)
T COG1880          34 KAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGS   83 (170)
T ss_pred             HCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHCCHHHCCCCC
T ss_conf             62795498655325889999999999864874475321102023246563


No 110
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin . It is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO).   No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 34-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process.
Probab=39.96  E-value=27  Score=15.46  Aligned_cols=91  Identities=22%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             CCCEEEEEEC-CEEEEECCCCCCHHHHHHHHHHH-HHH--HHHCCCCCCC------------CCCEEEEECCCCCCCC--
Q ss_conf             6677999968-93899729688889999999999-876--4200122223------------4870999736686855--
Q gi|254780664|r  429 KSNAVVYAKD-GRTVGIGSGQTSRVDSTRFAAIK-AHN--ISAQADVKSM------------TNGSVIASEAFYPFPD--  490 (536)
Q Consensus       429 kSNAIv~ak~-~~tiGiGaGQ~sRVda~~iA~~K-A~~--~~~~~~~~~~------------~~g~vlaSDAFFPF~D--  490 (536)
                      -|=+|-+++. +.+.||.+  ..|.--+++++.- +..  .+...++.+.            ..|-|+       =|-  
T Consensus       100 ~~fti~~~~r~et~TGIsa--~DR~~Ti~~~l~~~~~~vmmgr~~dFG~df~rPGHvfpLRAa~GgVL-------~R~GH  170 (230)
T TIGR00506       100 STFTIDVAHRKETTTGISA--NDRALTIRAALADVVKPVMMGRKEDFGSDFRRPGHVFPLRAADGGVL-------KRAGH  170 (230)
T ss_pred             EEEEEEEECCCCCEECCCH--HHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCCHHHHCCCCEE-------CCCCC
T ss_conf             3789997477885005546--47889998874676642222762455114368886541543278751-------25773


Q ss_pred             ---HHHHHHHCCCCEEE-------E--CCCCCCHHH--HHHHHHHCCCEEEE
Q ss_conf             ---58999971995999-------3--898779889--99999875977997
Q gi|254780664|r  491 ---GIVEAIKAGVTAVI-------Q--PGGSVRDSE--AITVADQHGIAMVF  528 (536)
Q Consensus       491 ---~ie~aa~~Gi~aIi-------q--PGGSirD~e--vI~aan~~gi~m~f  528 (536)
                         ||+++.=+|.+-+.       .  -|-+.|-+|  .+++|+||||.|+-
T Consensus       171 TEasVdL~~lAGl~pa~VICE~~nd~edG~mar~~ekf~~~yA~Kh~l~~i~  222 (230)
T TIGR00506       171 TEASVDLAELAGLKPAGVICEIMNDEEDGTMARKPEKFLVEYAKKHGLKLIS  222 (230)
T ss_pred             CHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             3488899997089972899862377203310366648899999881985011


No 111
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=39.88  E-value=21  Score=16.20  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=25.4

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEE
Q ss_conf             98553237155535533088989999999779984149
Q gi|254780664|r   74 GGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDL  111 (536)
Q Consensus        74 ~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDl  111 (536)
                      +++|-||||-||        |+.-.+.|++.|+..|+.
T Consensus        31 ~~~vy~lG~iVH--------N~~vv~~L~~~Gv~~v~~   60 (281)
T PRK12360         31 KKKIYTLGPLIH--------NNQVVSDLEEKGVKVIEE   60 (281)
T ss_pred             CCCEEEECCCCC--------CHHHHHHHHHCCCEEEEC
T ss_conf             996898377767--------989999999779979813


No 112
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=39.60  E-value=25  Score=15.69  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=17.0

Q ss_pred             CCCCHHHHH-HHHCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf             237155535-533088989999999779984149999
Q gi|254780664|r   79 TLHPKIYGG-ILSIRDNPAHMKFMQDHELESIDLVVV  114 (536)
Q Consensus        79 TLHP~I~gg-IL~~r~~~~~~~~l~~~~i~~IDlVvv  114 (536)
                      ||=|.|+|+ =|=-.-.+.=.++|.++||.| ||.||
T Consensus       184 TLVP~i~aagE~KTKPTQhSVKeLRs~Gi~P-D~i~c  219 (571)
T TIGR00337       184 TLVPYIAAAGELKTKPTQHSVKELRSLGIQP-DIIIC  219 (571)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHCCCCC-CEEEE
T ss_conf             0026314487478775127899998609888-68998


No 113
>pfam02091 tRNA-synt_2e Glycyl-tRNA synthetase alpha subunit.
Probab=39.44  E-value=10  Score=18.45  Aligned_cols=20  Identities=35%  Similarity=0.683  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCCCCCEEEE
Q ss_conf             23333436788100650576
Q gi|254780664|r  221 VKKQEMRYGENPHQKAALYS  240 (536)
Q Consensus       221 ~~~~~LRYGENPHQ~Aa~Y~  240 (536)
                      .+-.+=||||||.----+|+
T Consensus        55 rRP~DgRYGenPnRlq~y~Q   74 (284)
T pfam02091        55 RRPTDGRYGENPNRLQHYYQ   74 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHEE
T ss_conf             79999877789204200223


No 114
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284   This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis .   Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=39.38  E-value=28  Score=15.34  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCEEEEEC--------CCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             9999998600566779999689389972--------96888899999999998764200
Q gi|254780664|r  418 MKFAFKVVKHVKSNAVVYAKDGRTVGIG--------SGQTSRVDSTRFAAIKAHNISAQ  468 (536)
Q Consensus       418 L~FA~kv~K~vkSNAIv~ak~~~tiGiG--------aGQ~sRVda~~iA~~KA~~~~~~  468 (536)
                      |.=.|+++|.+ +-...=.|.|..|-|+        +||+|      =|..||+--++.
T Consensus       107 L~g~F~~t~~v-~~~M~K~R~GrIINisSVVG~~GN~GQaN------YaASKAG~IGft  158 (238)
T TIGR01830       107 LKGVFNLTQAV-LRPMIKQRSGRIINISSVVGLMGNAGQAN------YAASKAGVIGFT  158 (238)
T ss_pred             HHHHHHHHHHH-HHHHHHHCCCCEEEEEEHHHHHCCCCHHH------HHHHHHHHHHHH
T ss_conf             26687888998-89887506743486100200006874267------888875589999


No 115
>TIGR00070 hisG ATP phosphoribosyltransferase; InterPro: IPR001348   ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions .  ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate  Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides.   This entry represents the two forms of ATP phosphoribosyltransferase: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity .   The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined , . The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplamsic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process.
Probab=39.03  E-value=19  Score=16.63  Aligned_cols=15  Identities=20%  Similarity=0.169  Sum_probs=5.8

Q ss_pred             HHEECCCCHHHHHHH
Q ss_conf             111268798999885
Q gi|254780664|r  343 AIIAPTLSEEAADVL  357 (536)
Q Consensus       343 vIiAP~f~~eAleiL  357 (536)
                      |.||-+|=.=|.+-|
T Consensus       131 v~IAT~FP~~a~~Yf  145 (317)
T TIGR00070       131 VRIATEFPHLAKKYF  145 (317)
T ss_pred             EEEEECCHHHHHHHH
T ss_conf             899826757999999


No 116
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=38.61  E-value=22  Score=16.12  Aligned_cols=42  Identities=21%  Similarity=0.115  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHH
Q ss_conf             88999999860056677999968938997296888899999999
Q gi|254780664|r  416 RDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAA  459 (536)
Q Consensus       416 ~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~  459 (536)
                      ..++=|..+.+.  ++-.|||.|--+.=-.-|..--|.|.|-|.
T Consensus       176 NA~lKA~~~ak~--tG~pvLADDSGL~VDAL~G~PGIySARyAG  217 (328)
T PRK02491        176 NARLKAETISRL--TGKMVLADDSGLKVDALGGLPGVWSARFSG  217 (328)
T ss_pred             HHHHHHHHHHHH--HCCCEEECCCCEEEEECCCCCCCCEEEECC
T ss_conf             999999999998--799689627761881048998722334158


No 117
>COG2428 Uncharacterized conserved protein [Function unknown]
Probab=38.44  E-value=25  Score=15.65  Aligned_cols=52  Identities=23%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHCCCEEEEEHHHH---HHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCC
Q ss_conf             6999999998799999942768---99998899517946534881651985532371
Q gi|254780664|r   29 VVEFASRLLSRGIKIISTGGTC---QLLEEEGIPVTSVFDITKFPEIMGGRVKTLHP   82 (536)
Q Consensus        29 l~~la~~L~~~g~~iisTgGTa---~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP   82 (536)
                      |.++...+.+.|++.+-|+-+-   ..|-+.|.++..+| +|..| .=++||=-|.|
T Consensus        17 llEy~e~a~~~G~~~~vtna~pe~p~vlak~g~~~i~e~-~~~~~-l~r~rvivLDl   71 (196)
T COG2428          17 LLEYKEVARWWGDEFIVTNAKPEEPEVLAKIGLSGIPES-ITRLP-LDRSRVIVLDL   71 (196)
T ss_pred             HHHHHHHHHHHCHHEEEECCCCCHHHHHHHHCCCCCCHH-HHHCC-CCCCCEEEECC
T ss_conf             999999999834430660578621579998265668636-76263-67897799668


No 118
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=38.12  E-value=11  Score=18.33  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=13.6

Q ss_pred             CCCCCEEEE-CHHHHHHHHHHHHC
Q ss_conf             156313530-89998988987530
Q gi|254780664|r  150 NHDYVTILT-NPQDYPLFLAEMDV  172 (536)
Q Consensus       150 N~~~V~Vi~-dp~dY~~~~~el~~  172 (536)
                      +|++++.+. ||+-+..++++|..
T Consensus        21 ~F~Ditpll~dp~~~~~~~~~l~~   44 (174)
T PRK02304         21 LFRDITPLLADPEALREVIDALVE   44 (174)
T ss_pred             EEEECHHHHCCHHHHHHHHHHHHH
T ss_conf             688582476599999999999999


No 119
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=38.00  E-value=29  Score=15.19  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=28.0

Q ss_pred             HHHHHHHCCCC-----E-EEE-CCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             58999971995-----9-993-89877988999999875977997
Q gi|254780664|r  491 GIVEAIKAGVT-----A-VIQ-PGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       491 ~ie~aa~~Gi~-----a-Iiq-PGGSirD~evI~aan~~gi~m~f  528 (536)
                      +|+++.-+|.+     | |+- .|++.|-+++++.|.+|||.|+-
T Consensus       146 sVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~it  190 (203)
T COG0108         146 AVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVIT  190 (203)
T ss_pred             HHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             999999839997379999867986615738999999983996888


No 120
>PRK13113 consensus
Probab=37.26  E-value=30  Score=15.11  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHEECCCCHHHHH-HHH--CCCCCEEEEC
Q ss_conf             788654311112687989998-851--2455315631
Q gi|254780664|r  335 EVIKVFTEAIIAPTLSEEAAD-VLA--KKPSMRFLKT  368 (536)
Q Consensus       335 ~I~~~F~EvIiAP~f~~eAle-iL~--~KKnlRil~~  368 (536)
                      ...+.=++.+|-||.-.|.-+ +.+  ++-++.++.+
T Consensus       117 ~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~l  153 (263)
T PRK13113        117 EAKEAGIDGLIVVDLPPEEDSELCLPAQAAGLNFIRL  153 (263)
T ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9877794369717999788899999999779867999


No 121
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=37.18  E-value=30  Score=15.11  Aligned_cols=66  Identities=21%  Similarity=0.326  Sum_probs=28.5

Q ss_pred             CCCCCCC--------CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH----------HHHHHHHEEC-CCC
Q ss_conf             5686565--------45201689999998533213200455542754214578788----------6543111126-879
Q gi|254780664|r  290 HMNPCGV--------ATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVI----------KVFTEAIIAP-TLS  350 (536)
Q Consensus       290 H~NPCGv--------A~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~----------~~F~EvIiAP-~f~  350 (536)
                      -++|||.        +...++.+-|.+.+.+--+    -=|||...==.+|+..+-          +.++|-+=+- .++
T Consensus       213 m~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GI----QHIA~~T~dI~~tv~~lr~rG~~fl~ip~tYYd~~~~R~~~~  288 (363)
T COG3185         213 MVSPCGKVRLPLNESADDKSQIGEFLREYRGEGI----QHIAFGTDDIYATVAALRERGVKFLPIPETYYDDLDARFPLH  288 (363)
T ss_pred             EECCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC----EEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             7568885786245687762589999997378760----378843627999999999759866778642788876217897


Q ss_pred             HHHHHHHHC
Q ss_conf             899988512
Q gi|254780664|r  351 EEAADVLAK  359 (536)
Q Consensus       351 ~eAleiL~~  359 (536)
                      +|-++-|++
T Consensus       289 ~e~ld~Lr~  297 (363)
T COG3185         289 GEFLDALRE  297 (363)
T ss_pred             HHHHHHHHH
T ss_conf             677999885


No 122
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit; InterPro: IPR012844   In Escherichia coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits..
Probab=36.86  E-value=23  Score=15.93  Aligned_cols=31  Identities=42%  Similarity=0.659  Sum_probs=24.7

Q ss_pred             EEEEEECC--CCHHHHHHHHHH-CCCEEEEEHHH
Q ss_conf             89987545--686999999998-79999994276
Q gi|254780664|r   19 ALISVHNK--TGVVEFASRLLS-RGIKIISTGGT   49 (536)
Q Consensus        19 ALiSV~dK--tgl~~la~~L~~-~g~~iisTgGT   49 (536)
                      -|+|=|-|  .|+.+|++.... ..|+|++.|||
T Consensus         4 VlVSHS~~iaeG~~~L~~qM~~S~dV~I~~aGGt   37 (128)
T TIGR02364         4 VLVSHSKKIAEGVKELVKQMAGSDDVKIISAGGT   37 (128)
T ss_pred             EEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             8987646688899999998536795468871064


No 123
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=36.81  E-value=30  Score=15.07  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHHHC-CCE--EEEEHHH-----HHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCH---
Q ss_conf             6869999999987-999--9994276-----8999988995179465348816519855323715553553308898---
Q gi|254780664|r   27 TGVVEFASRLLSR-GIK--IISTGGT-----CQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNP---   95 (536)
Q Consensus        27 tgl~~la~~L~~~-g~~--iisTgGT-----a~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~---   95 (536)
                      .+|++|.+.|.+. |++  -+.|-|+     ++.|+++|+.-..||=            -||.|..|.-|-.+.+-+   
T Consensus        82 ~di~~li~~l~~~~gi~~v~lTTNG~lL~~~a~~Lk~aGL~riNISL------------DsLd~~~f~~IT~~~~l~~Vl  149 (334)
T PRK00164         82 KDLEDIIARLAALPGIRDLALTTNGYLLARRAAALKDAGLTRVNVSL------------DSLDPERFKAITGRDRLDQVL  149 (334)
T ss_pred             CCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEE------------EECCHHHHHHHHCCCCHHHHH
T ss_conf             57899999986327975178844488999999999985998699711------------318999999984899759999


Q ss_pred             HHHHHHHHCCCCCEEEEE
Q ss_conf             999999977998414999
Q gi|254780664|r   96 AHMKFMQDHELESIDLVV  113 (536)
Q Consensus        96 ~~~~~l~~~~i~~IDlVv  113 (536)
                      .-+..+.+.|+.++-+-+
T Consensus       150 ~gI~~A~~~G~~~vKiN~  167 (334)
T PRK00164        150 AGIDAALAAGLEPVKVNA  167 (334)
T ss_pred             HHHHHHHHCCCCCEEEEE
T ss_conf             999999958987616899


No 124
>KOG2811 consensus
Probab=36.51  E-value=22  Score=16.14  Aligned_cols=49  Identities=27%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHH-------------HHHHHHHHHCCCCCCCEE
Q ss_conf             167764245567279996156865654520168-------------999999853321320045
Q gi|254780664|r  271 FELVSEFRSQDCAACVIVKHMNPCGVATADTLV-------------EAYRRALSCDPISAFGGI  321 (536)
Q Consensus       271 ~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~-------------~Ay~~A~~~DP~SAFGGI  321 (536)
                      ++-+-||...+.|.++|=||  -||+|+.-++.             .+..-|+-|--.|-|+.-
T Consensus       248 L~~i~el~~~~~p~vaisKH--LCG~ATDLtLRCl~~s~~~~~p~l~~i~IAlCCHH~c~wr~Y  309 (420)
T KOG2811         248 LNAIPELKNSGKPYVAISKH--LCGAATDLTLRCLLSSGDASSPVLAGILIALCCHHRCRWRSY  309 (420)
T ss_pred             CCCCCCCCCCCCCEEEEECC--CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf             55320004569837998422--346212367888606854335303457887743010334443


No 125
>pfam08149 BING4CT BING4CT (NUC141) domain. This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins.
Probab=36.25  E-value=8.9  Score=18.94  Aligned_cols=34  Identities=35%  Similarity=0.572  Sum_probs=29.8

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCC
Q ss_conf             4870999736686855589999719959993898
Q gi|254780664|r  475 TNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGG  508 (536)
Q Consensus       475 ~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGG  508 (536)
                      ..|....|=.|-||-|-+-.....|++.||-||-
T Consensus         7 ~~~~~i~~~~F~PfEDvLgvGh~~G~ssiiVPGs   40 (80)
T pfam08149         7 KPGSKISSVRFCPFEDVLGIGHSGGFSSIIVPGS   40 (80)
T ss_pred             CCCCCEEEEEEECHHHEEEECCCCCEEEEEECCC
T ss_conf             7998141457744578357303576256771699


No 126
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=36.23  E-value=31  Score=15.00  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=11.0

Q ss_pred             CCHHHHHHHHHHCCCE--EEEEHH
Q ss_conf             6869999999987999--999427
Q gi|254780664|r   27 TGVVEFASRLLSRGIK--IISTGG   48 (536)
Q Consensus        27 tgl~~la~~L~~~g~~--iisTgG   48 (536)
                      +|+-+..+.|.++|+=  |++||+
T Consensus        72 aGlr~~i~~lIr~~~Vd~IvtTgA   95 (344)
T PRK02492         72 AGCMQVYIDLVENNMVDAIVATGA   95 (344)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             668999999997698569972788


No 127
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=35.98  E-value=31  Score=14.98  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=13.2

Q ss_pred             HHHHHHHHEECCCCHHHHHHHH---CCCCCEEEEC
Q ss_conf             8654311112687989998851---2455315631
Q gi|254780664|r  337 IKVFTEAIIAPTLSEEAADVLA---KKPSMRFLKT  368 (536)
Q Consensus       337 ~~~F~EvIiAP~f~~eAleiL~---~KKnlRil~~  368 (536)
                      .+.=+..+|.||.-.|..+.+.   ++-++..+.+
T Consensus       101 ~~~Gv~GviipDLP~ee~~~~~~~~~~~~i~~I~l  135 (242)
T cd04724         101 KEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFL  135 (242)
T ss_pred             HHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             97599758706999578468999998659838899


No 128
>PRK13127 consensus
Probab=35.70  E-value=32  Score=14.95  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=14.2

Q ss_pred             HHHHHHHHEECCCCHHHHHHHHC---CCCCEEEEC
Q ss_conf             86543111126879899988512---455315631
Q gi|254780664|r  337 IKVFTEAIIAPTLSEEAADVLAK---KPSMRFLKT  368 (536)
Q Consensus       337 ~~~F~EvIiAP~f~~eAleiL~~---KKnlRil~~  368 (536)
                      .+.=++.+|-||.-.|.-+.+.+   +.++.++.+
T Consensus       112 ~~~GvdGlIipDLP~eE~~~~~~~~~~~gi~~I~l  146 (262)
T PRK13127        112 AEAGVSGLIIPDLPVEEATDLREACKKHGLDLVFL  146 (262)
T ss_pred             HHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             87599769966999789999999998558327998


No 129
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.48  E-value=32  Score=14.92  Aligned_cols=44  Identities=18%  Similarity=0.320  Sum_probs=33.6

Q ss_pred             EEEEEEEEECCCCHHHHHHHHHH---CCCEEEEEHHHHHHHHHCCCC
Q ss_conf             36989987545686999999998---799999942768999988995
Q gi|254780664|r   16 VKTALISVHNKTGVVEFASRLLS---RGIKIISTGGTCQLLEEEGIP   59 (536)
Q Consensus        16 ikrALiSV~dKtgl~~la~~L~~---~g~~iisTgGTa~~l~~~gi~   59 (536)
                      ||-++++-.|+....++|+.|.+   .+++++-..-||+.|...|++
T Consensus         1 MKi~iv~~~~~~~a~~~a~~l~~~L~~~~~v~~d~~~a~~l~~~~~~   47 (272)
T PRK01185          1 MKVAFVIRKDCKRCANIARSIISLLPSDWEIIYDKEAAKFLKKPGLD   47 (272)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCC
T ss_conf             98999997899899999999999996699199856888870999998


No 130
>pfam04210 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G. The N5-methyltetrahydromethanopterin: coenzyme M (EC:2.1.1.86) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump.
Probab=35.20  E-value=30  Score=15.07  Aligned_cols=20  Identities=15%  Similarity=0.315  Sum_probs=16.6

Q ss_pred             CEEEECHHHHHHHHHHHHCC
Q ss_conf             13530899989889875302
Q gi|254780664|r  154 VTILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus       154 V~Vi~dp~dY~~~~~el~~~  173 (536)
                      -+++++|+||.++.+.|+.-
T Consensus         5 P~~iv~p~df~ei~~rLd~i   24 (70)
T pfam04210         5 PKVVVPPDDFNEIHKRLDEI   24 (70)
T ss_pred             CEEECCHHHHHHHHHHHHHH
T ss_conf             86651889999999999999


No 131
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=35.08  E-value=32  Score=14.88  Aligned_cols=11  Identities=45%  Similarity=0.640  Sum_probs=8.7

Q ss_pred             CCCEEEEEEEC
Q ss_conf             98414999948
Q gi|254780664|r  106 LESIDLVVVNL  116 (536)
Q Consensus       106 i~~IDlVvvNL  116 (536)
                      +..-|+++|||
T Consensus        30 ~~~aD~~~~Nl   40 (239)
T smart00854       30 LRAADLAIGNL   40 (239)
T ss_pred             HHHCCEEEEEC
T ss_conf             97499999964


No 132
>PRK13137 consensus
Probab=34.74  E-value=33  Score=14.84  Aligned_cols=34  Identities=12%  Similarity=0.116  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHEECCCCHHHHHHHH---CCCCCEEEEC
Q ss_conf             788654311112687989998851---2455315631
Q gi|254780664|r  335 EVIKVFTEAIIAPTLSEEAADVLA---KKPSMRFLKT  368 (536)
Q Consensus       335 ~I~~~F~EvIiAP~f~~eAleiL~---~KKnlRil~~  368 (536)
                      ...+.=+..+|-||.-.|--+-|.   ++.++-++.+
T Consensus       123 ~a~~aGvdGlIipDLP~eE~~~~~~~~~~~gi~~I~l  159 (266)
T PRK13137        123 LFQEAGVDGLILPDLPPDQDPEIADLAAEIGLAVTFL  159 (266)
T ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9997696099947999788899999998759978999


No 133
>PRK13131 consensus
Probab=34.72  E-value=33  Score=14.84  Aligned_cols=10  Identities=40%  Similarity=0.388  Sum_probs=3.4

Q ss_pred             HHHHHHHHHH
Q ss_conf             1689999998
Q gi|254780664|r  301 TLVEAYRRAL  310 (536)
Q Consensus       301 ~~~~Ay~~A~  310 (536)
                      .+-+|..+|+
T Consensus        57 vIQ~a~~rAL   66 (257)
T PRK13131         57 TIQASHLRAL   66 (257)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 134
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein  (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions.  Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=34.62  E-value=33  Score=14.83  Aligned_cols=87  Identities=17%  Similarity=0.114  Sum_probs=37.3

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC--CHHHHHHHHHH--HHHHH
Q ss_conf             011677642455672799961568656545201689999998533213200455542754--21457878865--43111
Q gi|254780664|r  269 AAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREV--DQEVAKEVIKV--FTEAI  344 (536)
Q Consensus       269 aA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v--d~~~A~~I~~~--F~EvI  344 (536)
                      .+..++..+.+...-..+++-..+.   ..+....+.|+.++..-+...- .+.-.+...  +...+..+.+.  =.++|
T Consensus       111 ~~~~~~~~l~~~g~~~i~~i~~~~~---~~~~~r~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai  186 (269)
T cd01391         111 AGEAAAEYLAEKGWKRVALIYGDDG---AYGRERLEGFKAALKKAGIEVV-AIEYGDLDTEKGFQALLQLLKAAPKPDAI  186 (269)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCEE-EEEEECCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             9999986898718961699737985---7799999999999998699867-99971343214899999998618997399


Q ss_pred             EECCCCHHHHHHHHCC
Q ss_conf             1268798999885124
Q gi|254780664|r  345 IAPTLSEEAADVLAKK  360 (536)
Q Consensus       345 iAP~f~~eAleiL~~K  360 (536)
                      ++-+. ..|+.+++.=
T Consensus       187 ~~~~d-~~a~g~~~a~  201 (269)
T cd01391         187 FACND-EMAAGALKAA  201 (269)
T ss_pred             EECCH-HHHHHHHHHH
T ss_conf             98888-9999999999


No 135
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR).  Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.54  E-value=33  Score=14.82  Aligned_cols=70  Identities=20%  Similarity=0.201  Sum_probs=35.0

Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf             10589888312221200116776424556727999615686565452016899999985332132004555427542145
Q gi|254780664|r  253 LVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEV  332 (536)
Q Consensus       253 ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~  332 (536)
                      .+.-.-+.|+|.-|+..--+++.++.-   ..-+++    |+|..     .+.++++-.++=.      |++.+.....+
T Consensus       167 iig~~~~g~~~~gD~~eikrll~~~Gi---~v~~~~----p~~~t-----~~ei~~~~~A~ln------vv~~~~~~~~~  228 (430)
T cd01981         167 LIGPSSLGFHNRHDCRELKRLLHTLGI---EVNVVI----PEGAS-----VDDLNELPKAWFN------IVPYREYGLSA  228 (430)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHCCC---EEEEEE----CCCCC-----HHHHHHHHHCCEE------EEEHHHHHHHH
T ss_conf             982476777775689999999998399---189981----89999-----9999864126677------86049899999


Q ss_pred             HHHHHHHH
Q ss_conf             78788654
Q gi|254780664|r  333 AKEVIKVF  340 (536)
Q Consensus       333 A~~I~~~F  340 (536)
                      |+.+.+.|
T Consensus       229 a~~Le~~~  236 (430)
T cd01981         229 ALYLEEEF  236 (430)
T ss_pred             HHHHHHHH
T ss_conf             99999985


No 136
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.51  E-value=33  Score=14.82  Aligned_cols=54  Identities=13%  Similarity=0.076  Sum_probs=32.1

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH--H-HHEECCCCHHHHHHHHCC
Q ss_conf             9999985332132004555427542145787886543--1-111268798999885124
Q gi|254780664|r  305 AYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFT--E-AIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       305 Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~--E-vIiAP~f~~eAleiL~~K  360 (536)
                      +.+..+...|-  +-+|++.|...-....+.+.+.=.  + .|+.=|.++++++.++.-
T Consensus       175 ~~~~~L~~~p~--i~ai~~~~d~~a~Ga~~a~~~~G~~~~i~vvg~D~~~~~~~~i~~G  231 (277)
T cd06319         175 YTNDLLTANPD--IRAIWLQGSDRYQGALDAIATAGKTGKVLLICFDAEPEFIELLKSG  231 (277)
T ss_pred             HHHHHHHHCCC--CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC
T ss_conf             99999973899--7689966988999999999975999985899637979999998759


No 137
>KOG0774 consensus
Probab=34.47  E-value=33  Score=14.81  Aligned_cols=67  Identities=19%  Similarity=0.193  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCC
Q ss_conf             75421457878865431111268798999885124553156316766777666402032102231012334
Q gi|254780664|r  326 REVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNV  396 (536)
Q Consensus       326 ~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~  396 (536)
                      |..++.+-+.+.+.|+.-+--|-=++||.+-|.++=|+.|-+...+..  .  ..+|..-.+...|+.+++
T Consensus       193 RNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfg--n--krIrykK~~~k~~ee~~l  259 (334)
T KOG0774         193 RNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFG--N--KRIRYKKNMGKNQEEANL  259 (334)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEHHHCCCCC--C--CEEEHHHHHHHHHHHHHH
T ss_conf             164421799999999973379998378999999872934056323224--5--403215310023655546


No 138
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=34.17  E-value=28  Score=15.35  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7296888899999999998764
Q gi|254780664|r  444 IGSGQTSRVDSTRFAAIKAHNI  465 (536)
Q Consensus       444 iGaGQ~sRVda~~iA~~KA~~~  465 (536)
                      -|.|.++..+|+++|+.||-..
T Consensus        64 ~GGG~sgQa~AirlaIaraL~~   85 (130)
T TIGR03627        64 SGGGIMGQADAARTAIARGLVE   85 (130)
T ss_pred             EECCEEHHHHHHHHHHHHHHHH
T ss_conf             8288306887999999999998


No 139
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=34.06  E-value=27  Score=15.42  Aligned_cols=72  Identities=18%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHH-------------------EECCCCHHHHHHHHC---------CCCCEEEECC
Q ss_conf             004555427542145787886543111-------------------126879899988512---------4553156316
Q gi|254780664|r  318 FGGIIAFNREVDQEVAKEVIKVFTEAI-------------------IAPTLSEEAADVLAK---------KPSMRFLKTS  369 (536)
Q Consensus       318 FGGIIa~N~~vd~~~A~~I~~~F~EvI-------------------iAP~f~~eAleiL~~---------KKnlRil~~~  369 (536)
                      =||+|-+|+..+.+.++.|.+-.+-.+                   .-|+|.+=|..+++.         +...+++.  
T Consensus       248 rGGiIl~~k~~~~e~~~kId~aVFPg~qggph~h~IAa~Ava~~Ea~~~efk~Ya~qVv~NAkaLa~~L~~~G~~vvs--  325 (450)
T PTZ00094        248 RSGMIFFRKKIRPDIESKINQAVFPGLQGGPHFHQIAAIAVQLKEVCSPEWKEYAKQVVDNAKALAAELEKRGFDLVT--  325 (450)
T ss_pred             CCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE--
T ss_conf             842898446640899998545128854467778799999999999757679999999999999999999978996950--


Q ss_pred             CCCCCCCCCCEECCCC-HHHHHC
Q ss_conf             7667776664020321-022310
Q gi|254780664|r  370 SLLDFHGEEIVLKTVS-GGILVQ  391 (536)
Q Consensus       370 ~~~~~~~~~~~~rsi~-GG~LvQ  391 (536)
                      ...+...--+++|+.. +|.-++
T Consensus       326 ggTdnHlvlvDl~~~g~~G~~ae  348 (450)
T PTZ00094        326 GGTDNHLILWNLRPFGITGSKVE  348 (450)
T ss_pred             CCCCCEEEEEECCCCCCCHHHHH
T ss_conf             89976279997777899999999


No 140
>TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process.
Probab=33.97  E-value=34  Score=14.75  Aligned_cols=84  Identities=21%  Similarity=0.380  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHHHCCCEEEEEHHHHHHH-----HHCCCCEEEHHHHCCCCHHC-CCCCCCCCCHHHHHHHHCC-CCHHHH
Q ss_conf             5686999999998799999942768999-----98899517946534881651-9855323715553553308-898999
Q gi|254780664|r   26 KTGVVEFASRLLSRGIKIISTGGTCQLL-----EEEGIPVTSVFDITKFPEIM-GGRVKTLHPKIYGGILSIR-DNPAHM   98 (536)
Q Consensus        26 Ktgl~~la~~L~~~g~~iisTgGTa~~l-----~~~gi~v~~Vs~~TgfpEil-~GRVKTLHP~I~ggIL~~r-~~~~~~   98 (536)
                      -.|+.|+++.|++.||.+.=-+|-..+.     .+.||+.|.+--  +-=++- ||+   |-=.+-|-|+... .-+-=.
T Consensus        88 ~~G~~Elv~~L~~~gykVav~SGGF~~~a~~~k~~L~LD~tn~fa--N~L~~~~dG~---LTG~v~G~~v~~~~K~~~l~  162 (223)
T TIGR00338        88 TEGAEELVKTLKEKGYKVAVISGGFDLFAEHLKDKLGLDYTNAFA--NRLEVEFDGK---LTGLVEGDIVDASYKGETLL  162 (223)
T ss_pred             CCCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHH--CEEEEEECCC---CCCCCCCCCCCCCCCHHHHH
T ss_conf             978789999998869079998577688898889985788647210--2004622773---14842365000003508999


Q ss_pred             HHHHHCCCCCEEEEEE
Q ss_conf             9999779984149999
Q gi|254780664|r   99 KFMQDHELESIDLVVV  114 (536)
Q Consensus        99 ~~l~~~~i~~IDlVvv  114 (536)
                      .-++++||++=+.|.|
T Consensus       163 ~l~~~e~i~~~~~vav  178 (223)
T TIGR00338       163 KLLEKEGISLENTVAV  178 (223)
T ss_pred             HHHHHHCCCHHHEEEE
T ss_conf             9999738882218776


No 141
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit; InterPro: IPR012721    Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT theta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=33.92  E-value=34  Score=14.75  Aligned_cols=43  Identities=33%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             CCCCCHHHHHHHHHHH----HHHHCCCCCEEEEEECC--EEEEECCCCCCHHHHHHH
Q ss_conf             7778688988899999----98600566779999689--389972968888999999
Q gi|254780664|r  407 KRSPTDQELRDMKFAF----KVVKHVKSNAVVYAKDG--RTVGIGSGQTSRVDSTRF  457 (536)
Q Consensus       407 ~~~pt~~e~~dL~FA~----kv~K~vkSNAIv~ak~~--~tiGiGaGQ~sRVda~~i  457 (536)
                      -|-.|..-++|++=|.    +++|       +++||+  ..+ -|+|=|-=.=|-||
T Consensus       380 LRGsT~N~LDDiERAiDDGVN~~K-------~L~KD~GGrl~-pGaGAtEieL~~~L  428 (554)
T TIGR02346       380 LRGSTKNLLDDIERAIDDGVNVIK-------ALVKDNGGRLL-PGAGATEIELAKRL  428 (554)
T ss_pred             ECCCCCCHHHHHHHHHHCCHHHHH-------EEECCCCCCEE-CCCCCHHHHHHHHH
T ss_conf             523000013444444304312101-------00058986150-57772489999999


No 142
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=33.73  E-value=34  Score=14.73  Aligned_cols=34  Identities=12%  Similarity=0.184  Sum_probs=22.7

Q ss_pred             HHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHHHH
Q ss_conf             320023343469998--7401563135308999898
Q gi|254780664|r  132 MVENIDIGGPSMIRA--AAKNHDYVTILTNPQDYPL  165 (536)
Q Consensus       132 ~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY~~  165 (536)
                      -.-.|-=||.+|+|-  -|.+-+...+|+|..-+-.
T Consensus        93 ~lnlIKGgGgal~rEKivA~~ak~~IiI~D~sK~v~  128 (228)
T PRK13978         93 SLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQ  128 (228)
T ss_pred             CCCEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             878898784999999999970384899983654345


No 143
>KOG4127 consensus
Probab=33.61  E-value=34  Score=14.72  Aligned_cols=52  Identities=23%  Similarity=0.277  Sum_probs=28.9

Q ss_pred             CHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             0011677642455672799961568656545-201689999998533213200455542754
Q gi|254780664|r  268 DAAFELVSEFRSQDCAACVIVKHMNPCGVAT-ADTLVEAYRRALSCDPISAFGGIIAFNREV  328 (536)
Q Consensus       268 daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~-~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v  328 (536)
                      ++.++-+-+..+    |-||+-|.++-++-- ..|+-+-..+.++--     ||+|-+|.--
T Consensus       255 ~atm~~aL~vS~----APVIFSHSsA~~vcns~rNVPDdVL~llk~N-----gGvVMVnfy~  307 (419)
T KOG4127         255 DATMRDALEVSR----APVIFSHSSAYSVCNSSRNVPDDVLQLLKEN-----GGVVMVNFYP  307 (419)
T ss_pred             HHHHHHHHHHHC----CCEEEECCCHHHHHCCCCCCCHHHHHHHHHC-----CCEEEEEEEC
T ss_conf             899999997523----8657633557877537567958999987534-----9789998420


No 144
>PRK04046 translation initiation factor IF-6; Provisional
Probab=33.58  E-value=34  Score=14.71  Aligned_cols=64  Identities=23%  Similarity=0.415  Sum_probs=41.5

Q ss_pred             CCCCCCCCCCCHHHH----HHHHHHH------HCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHC
Q ss_conf             568656545201689----9999985------332132004555427542145787886543111126879899988512
Q gi|254780664|r  290 HMNPCGVATADTLVE----AYRRALS------CDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAK  359 (536)
Q Consensus       290 H~NPCGvA~~~~~~~----Ay~~A~~------~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~  359 (536)
                      -.|-=|..+.....+    ..++...      -+..+|.|-+|++|...              .++-|++++++.++++.
T Consensus        62 ~gNsnGllvp~~~~d~El~~l~~~~~v~V~~l~~~~nAlGN~Il~ND~~--------------Alv~p~l~~e~~e~I~d  127 (221)
T PRK04046         62 VGNSNGILVPRIVLDEELELLKNALDVNVEVLPSKLTALGNLILANDKG--------------ALVSPELSDEARKVIED  127 (221)
T ss_pred             EECCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCC--------------EEECCCCCHHHHHHHHH
T ss_conf             7058759937847899999887547917999788666754589975864--------------69768799899999988


Q ss_pred             CCCCEEEE
Q ss_conf             45531563
Q gi|254780664|r  360 KPSMRFLK  367 (536)
Q Consensus       360 KKnlRil~  367 (536)
                      -=+..+.+
T Consensus       128 ~L~Vev~~  135 (221)
T PRK04046        128 VLGVEVIR  135 (221)
T ss_pred             HHCCEEEE
T ss_conf             63956999


No 145
>PRK13122 consensus
Probab=33.56  E-value=34  Score=14.71  Aligned_cols=12  Identities=33%  Similarity=0.465  Sum_probs=4.6

Q ss_pred             HHHHEECCCCHH
Q ss_conf             311112687989
Q gi|254780664|r  341 TEAIIAPTLSEE  352 (536)
Q Consensus       341 ~EvIiAP~f~~e  352 (536)
                      ++.+|-||.-.|
T Consensus       104 vdGvIipDLP~e  115 (242)
T PRK13122        104 VYGLIIPDLPYE  115 (242)
T ss_pred             CCEEECCCCCHH
T ss_conf             986777899878


No 146
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=33.51  E-value=29  Score=15.23  Aligned_cols=68  Identities=18%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH-HHHHHHHHHHEECCCCHHHHHHHHCCCC
Q ss_conf             799961568656545201689999998533213200455542754214578-7886543111126879899988512455
Q gi|254780664|r  284 ACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAK-EVIKVFTEAIIAPTLSEEAADVLAKKPS  362 (536)
Q Consensus       284 a~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~-~I~~~F~EvIiAP~f~~eAleiL~~KKn  362 (536)
                      .+-|.||.|.. +++..-         .+|=+.++|    +|-..+.+.++ .|.+.=+=-+.||.|.+.-..+-.-+|.
T Consensus       301 Gv~VaKHGNrs-~sSksG---------SADvLealG----v~i~~~~~~~~~~l~~~gi~FlfAp~~Hpamk~v~pvRk~  366 (531)
T PRK09522        301 GLKVAKHGNRS-VSSKSG---------SSDLLAAFG----INLDMNADKSRQALDELGVCFLFAPKYHTGFRHAMPVRQQ  366 (531)
T ss_pred             CCEEEEECCCC-CCCCCC---------HHHHHHHCC----CCCCCCHHHHHHHHHHCCEEEEECHHHCHHHHHHHHHHHH
T ss_conf             98676058987-798862---------999999709----9988999999999997491586234336669999999997


Q ss_pred             CEE
Q ss_conf             315
Q gi|254780664|r  363 MRF  365 (536)
Q Consensus       363 lRi  365 (536)
                      |.+
T Consensus       367 Lg~  369 (531)
T PRK09522        367 LKT  369 (531)
T ss_pred             CCC
T ss_conf             198


No 147
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=33.43  E-value=34  Score=14.70  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=27.7

Q ss_pred             HHHHHHHCCCC------EEE-ECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             58999971995------999-389877988999999875977997
Q gi|254780664|r  491 GIVEAIKAGVT------AVI-QPGGSVRDSEAITVADQHGIAMVF  528 (536)
Q Consensus       491 ~ie~aa~~Gi~------aIi-qPGGSirD~evI~aan~~gi~m~f  528 (536)
                      +|+++.-+|.+      -|+ .+|.+.|-+|..+.|.+|+++|+-
T Consensus       157 avdL~~lAGl~P~avicEil~ddG~ma~~~el~~fA~~~~lp~is  201 (214)
T PRK01792        157 AVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYSVVT  201 (214)
T ss_pred             HHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             999999829997199999845998736779999999983997998


No 148
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=33.09  E-value=35  Score=14.66  Aligned_cols=43  Identities=16%  Similarity=0.151  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHHHHH-EECCCCHHHH-HHHHC--CCCCEEEECCC
Q ss_conf             42145787886543111-1268798999-88512--45531563167
Q gi|254780664|r  328 VDQEVAKEVIKVFTEAI-IAPTLSEEAA-DVLAK--KPSMRFLKTSS  370 (536)
Q Consensus       328 vd~~~A~~I~~~F~EvI-iAP~f~~eAl-eiL~~--KKnlRil~~~~  370 (536)
                      |-..||+.+.+..+.+. +.+.++.|.| +.+..  .++.+++....
T Consensus        84 VG~~Ta~~l~~~g~~~~~~~~~~~se~L~~~~~~~~~~~~~il~~~g  130 (239)
T cd06578          84 VGPKTAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRG  130 (239)
T ss_pred             CCHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             48899999997299855778889999999999873468986999847


No 149
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=32.70  E-value=35  Score=14.61  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=27.1

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCC
Q ss_conf             9959993898779889999998759779974785
Q gi|254780664|r  499 GVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIR  532 (536)
Q Consensus       499 Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~R  532 (536)
                      |=++.|--||..+=.-||.|..++||..|.||++
T Consensus       337 GKkaaiY~GGa~KswSlv~Al~dLGMeVV~~GTq  370 (470)
T TIGR01283       337 GKKAAIYTGGAVKSWSLVSALQDLGMEVVATGTQ  370 (470)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             9889986586478999998884579179998300


No 150
>smart00654 eIF6 translation initiation factor 6.
Probab=32.69  E-value=35  Score=14.61  Aligned_cols=62  Identities=23%  Similarity=0.418  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCHHHH----HHHHHHH--------HCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHH
Q ss_conf             68656545201689----9999985--------33213200455542754214578788654311112687989998851
Q gi|254780664|r  291 MNPCGVATADTLVE----AYRRALS--------CDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLA  358 (536)
Q Consensus       291 ~NPCGvA~~~~~~~----Ay~~A~~--------~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~  358 (536)
                      .|-=|..+.....+    -.++.+.        -++++|.|-+|++|...              .++-|+++++..++++
T Consensus        61 GNsnGllvp~~~~d~El~~l~~~l~~~v~V~~l~~~~~AlGN~I~~ND~~--------------Alv~p~l~~e~~e~I~  126 (200)
T smart00654       61 GNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHG--------------ALASPDLSKETEEIIS  126 (200)
T ss_pred             ECCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCC--------------EEECCCCCHHHHHHHH
T ss_conf             62885892797999999998863745741999688655656789976865--------------7986879989999998


Q ss_pred             CCCCCEEE
Q ss_conf             24553156
Q gi|254780664|r  359 KKPSMRFL  366 (536)
Q Consensus       359 ~KKnlRil  366 (536)
                      .-=+..+.
T Consensus       127 dvL~Vev~  134 (200)
T smart00654      127 DVLGVEVF  134 (200)
T ss_pred             HHHCCEEE
T ss_conf             74093599


No 151
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=32.56  E-value=34  Score=14.76  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=16.5

Q ss_pred             CEEEECHHHHHHHHHHHHCC
Q ss_conf             13530899989889875302
Q gi|254780664|r  154 VTILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus       154 V~Vi~dp~dY~~~~~el~~~  173 (536)
                      -++++||+||.++.+.|+.-
T Consensus         6 P~~~v~~~df~ei~~rLd~i   25 (75)
T PRK01026          6 PTVVVDPKDYKEIMKRLDEI   25 (75)
T ss_pred             CEEECCHHHHHHHHHHHHHH
T ss_conf             81035889999999999999


No 152
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=32.51  E-value=35  Score=14.59  Aligned_cols=29  Identities=14%  Similarity=0.052  Sum_probs=12.9

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCHHHCCC
Q ss_conf             367881006505760477668210121058
Q gi|254780664|r  227 RYGENPHQKAALYSTPEKKSGIAHAVLVQG  256 (536)
Q Consensus       227 RYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~G  256 (536)
                      +-|++|--.-++ ........+..|....|
T Consensus       204 ~~g~~paN~ill-rg~G~~p~lp~F~e~~g  232 (395)
T PRK04200        204 SEGKDPANSIWL-WGQGYAPKMPTFKERYG  232 (395)
T ss_pred             HCCCCCCCEEEE-CCCCCCCCCCCHHHHHC
T ss_conf             769986657876-42798988999768738


No 153
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047   This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , .   CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=32.28  E-value=36  Score=14.57  Aligned_cols=58  Identities=19%  Similarity=0.142  Sum_probs=27.5

Q ss_pred             CCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCC-CEEEECCCCC--CCCCCCCE---ECCCCHHHHHCCC
Q ss_conf             542145787886543111126879899988512455-3156316766--77766640---2032102231012
Q gi|254780664|r  327 EVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPS-MRFLKTSSLL--DFHGEEIV---LKTVSGGILVQTR  393 (536)
Q Consensus       327 ~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKn-lRil~~~~~~--~~~~~~~~---~rsi~GG~LvQ~~  393 (536)
                      +.|.+.|+++.+.-.         +.|+|=|++||. -+...++..+  +..---+.   +....|+.+-|++
T Consensus       373 ~y~~~~A~E~A~~iI---------~~AIeaFk~R~~s~~~~~~~~~kG~~k~vvGfS~Eal~~~Lg~~~~~~P  436 (647)
T TIGR01702       373 PYDPEKAEETAKTII---------EMAIEAFKERKESKQKVAIPKEKGKQKVVVGFSEEALVKALGGKLADDP  436 (647)
T ss_pred             CCCHHHHHHHHHHHH---------HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCC
T ss_conf             988767889999999---------9999976303467886565400486217883077999997246423475


No 154
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=32.24  E-value=26  Score=15.61  Aligned_cols=29  Identities=31%  Similarity=0.423  Sum_probs=24.9

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf             23343469998740156313530899989
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~  164 (536)
                      -|||+-.++.|+..|..-+.++.|-.-|.
T Consensus        93 ~dIG~~~l~haa~Rn~~i~~iv~dN~~Yg  121 (235)
T cd03376          93 ADIGFQALSGAAERGHDILYICYDNEAYM  121 (235)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCHHHC
T ss_conf             54207889999982998399998882100


No 155
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=32.14  E-value=24  Score=15.80  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             0123333436788100650576
Q gi|254780664|r  219 TAVKKQEMRYGENPHQKAALYS  240 (536)
Q Consensus       219 ~~~~~~~LRYGENPHQ~Aa~Y~  240 (536)
                      +..+-.+=||||||.---.+|.
T Consensus        59 PSRRP~DGRYGenPNRlq~yyQ   80 (298)
T COG0752          59 PSRRPTDGRYGENPNRLQHYYQ   80 (298)
T ss_pred             CCCCCCCCCCCCCCHHHHHHEE
T ss_conf             6779988877889266523315


No 156
>PRK06721 threonine synthase; Reviewed
Probab=31.82  E-value=36  Score=14.51  Aligned_cols=15  Identities=13%  Similarity=0.197  Sum_probs=9.4

Q ss_pred             HHHHCCCCCCEEEEC
Q ss_conf             987401563135308
Q gi|254780664|r  145 RAAAKNHDYVTILTN  159 (536)
Q Consensus       145 RAAAKN~~~V~Vi~d  159 (536)
                      -||+++++-+.++.+
T Consensus        93 ~aa~~G~~~~IvmP~  107 (352)
T PRK06721         93 YAARLGMKCIIVIPE  107 (352)
T ss_pred             HHHHHCCCEEEEECC
T ss_conf             999848966999247


No 157
>pfam01634 HisG ATP phosphoribosyltransferase.
Probab=31.80  E-value=26  Score=15.57  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=14.1

Q ss_pred             HHEECCCCHHHHHHHHCC-CCCEEEECC
Q ss_conf             111268798999885124-553156316
Q gi|254780664|r  343 AIIAPTLSEEAADVLAKK-PSMRFLKTS  369 (536)
Q Consensus       343 vIiAP~f~~eAleiL~~K-KnlRil~~~  369 (536)
                      .-||-.|-.=+-+.|.++ -+.+++.+.
T Consensus        66 ~rIATkYp~it~~~~~~~gi~~~ii~l~   93 (161)
T pfam01634        66 KRIATKYPNLARKYFRKNGIDAEIIKLD   93 (161)
T ss_pred             CEEEEECHHHHHHHHHHCCCEEEEEECC
T ss_conf             7999965399999999819826899755


No 158
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=31.76  E-value=36  Score=14.51  Aligned_cols=92  Identities=11%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99988512455315631676677766640203210223101233453100012467778688988899999986005667
Q gi|254780664|r  352 EAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSN  431 (536)
Q Consensus       352 eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~pt~~e~~dL~FA~kv~K~vkSN  431 (536)
                      ||++++.++.-.+++...........-+..|.+...++.+..+.. ...=..+.|+.-.+-..-.++..|.+....-+=.
T Consensus        14 eA~~~M~~~~i~~v~V~~~~~~~~vGiiT~~Di~~~~~~~~~~~~-~~~V~~vMt~~v~tv~~d~~~~~a~~~m~~~~i~   92 (114)
T cd04630          14 EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPD-RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIR   92 (114)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCCC-CCCHHHHCCCCEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999982998899997899608999981898999984678944-4498682703549999949499999999977972


Q ss_pred             EEEEEECCEEEEE
Q ss_conf             7999968938997
Q gi|254780664|r  432 AVVYAKDGRTVGI  444 (536)
Q Consensus       432 AIv~ak~~~tiGi  444 (536)
                      .+.+.+++..+||
T Consensus        93 ~lpVvd~~~lvGi  105 (114)
T cd04630          93 RAPVVENNELIGI  105 (114)
T ss_pred             EEEEEECCEEEEE
T ss_conf             9999999999999


No 159
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=31.61  E-value=23  Score=16.01  Aligned_cols=21  Identities=33%  Similarity=0.668  Sum_probs=14.4

Q ss_pred             CCCCCCCCCCCCCCCCCEEEE
Q ss_conf             123333436788100650576
Q gi|254780664|r  220 AVKKQEMRYGENPHQKAALYS  240 (536)
Q Consensus       220 ~~~~~~LRYGENPHQ~Aa~Y~  240 (536)
                      -.+-.+=||||||.---.+|.
T Consensus        55 srRP~DgRYG~NPNRlq~y~Q   75 (279)
T cd00733          55 SRRPTDGRYGENPNRLQHYYQ   75 (279)
T ss_pred             CCCCCCCCCCCCCCHHCEEEE
T ss_conf             779999877789323100034


No 160
>PRK07576 short chain dehydrogenase; Provisional
Probab=31.46  E-value=37  Score=14.47  Aligned_cols=40  Identities=10%  Similarity=0.087  Sum_probs=21.5

Q ss_pred             CEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf             1369899875456869999999987999999427689999
Q gi|254780664|r   15 AVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLE   54 (536)
Q Consensus        15 ~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~   54 (536)
                      +=|.|||.=.-+-==...|+.|.+.|..++-++-+...+.
T Consensus         7 ~gK~alVTGgs~GIG~aia~~la~~Ga~V~i~~r~~~~~~   46 (260)
T PRK07576          7 AGKNVFVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD   46 (260)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             8998999589619999999999987999999979889999


No 161
>CHL00079 rps9 ribosomal protein S9
Probab=31.42  E-value=25  Score=15.65  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=19.0

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             97296888899999999998764
Q gi|254780664|r  443 GIGSGQTSRVDSTRFAAIKAHNI  465 (536)
Q Consensus       443 GiGaGQ~sRVda~~iA~~KA~~~  465 (536)
                      =-|.|.++..+|+++|+.||-..
T Consensus        71 V~GGG~sgQa~Air~aIaRaL~~   93 (134)
T CHL00079         71 VKGGGLTGQAEAIKLGIARALCS   93 (134)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHH
T ss_conf             97887543999999999999999


No 162
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=31.37  E-value=37  Score=14.46  Aligned_cols=83  Identities=23%  Similarity=0.297  Sum_probs=54.5

Q ss_pred             CCCCCHHHCCCCC-CCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             6821012105898-883122212001167764245567279996156865654520168999999853321320045554
Q gi|254780664|r  246 SGIAHAVLVQGKP-LSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAF  324 (536)
Q Consensus       246 ~~~~~~~ql~GKe-LSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~  324 (536)
                      +|...|-.|||=| ||-===-=.++|++++.=|.+.  |.   |+-.|=-|.++...    |++|-.==|---||+|+.|
T Consensus       285 sPFnAFLllQGLETLsLR~ERH~~NA~kVA~fL~~H--p~---V~wV~YPGL~s~~~----h~lAkkYl~~G~~G~vLsF  355 (434)
T TIGR01326       285 SPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAH--PK---VAWVNYPGLASHPH----HALAKKYLPKGLFGAVLSF  355 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC---CCCCCCCCCCCCHH----HHHHHHHHCCCCEEEEEEC
T ss_conf             178999999866678767888889999999997278--84---45134888788753----7889987417942678741


Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             2754214578788
Q gi|254780664|r  325 NREVDQEVAKEVI  337 (536)
Q Consensus       325 N~~vd~~~A~~I~  337 (536)
                      --+==.+.++++.
T Consensus       356 e~kGG~ea~~kfi  368 (434)
T TIGR01326       356 EIKGGREAGKKFI  368 (434)
T ss_pred             CCCCCHHHHHHHH
T ss_conf             3218288999998


No 163
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.08  E-value=37  Score=14.43  Aligned_cols=90  Identities=21%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             CCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHH-HHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH
Q ss_conf             776136989987545686999999998799999942768-9999889951794653488165198553237155535533
Q gi|254780664|r   12 GEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTC-QLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS   90 (536)
Q Consensus        12 ~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa-~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~   90 (536)
                      ++++=|.|||.=.-+-==..+|+.|.+.|+.++-++..- +.+.+.      .+++    +-.++++..+.        .
T Consensus         3 ~~LkgK~~lITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~--------~   64 (250)
T PRK12825          3 GSLSGRVALVTGAARGIGRAIALRLAAAGADVIVHPPSDEAAAEET------VAAV----EALGRRAQAVQ--------A   64 (250)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH------HHHH----HHCCCCEEEEE--------E
T ss_conf             6609788999389558999999999987998999979887899999------9999----85399489999--------4


Q ss_pred             CCCCHHHHHHHHH---CCCCCEEEEEEECCCH
Q ss_conf             0889899999997---7998414999948888
Q gi|254780664|r   91 IRDNPAHMKFMQD---HELESIDLVVVNLYPF  119 (536)
Q Consensus        91 ~r~~~~~~~~l~~---~~i~~IDlVvvNLYPF  119 (536)
                      +-.++++.+++-+   ....+||++|.|--++
T Consensus        65 Dl~~~~~~~~~~~~~~~~~g~iDilInnAg~~   96 (250)
T PRK12825         65 DVTDAAALEAAVEELVERFGAIDILVNNAGIT   96 (250)
T ss_pred             ECCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             18999999999999999769998999899889


No 164
>PRK06701 short chain dehydrogenase; Provisional
Probab=31.00  E-value=37  Score=14.42  Aligned_cols=42  Identities=19%  Similarity=0.058  Sum_probs=34.1

Q ss_pred             CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHH
Q ss_conf             778867761369899875456869999999987999999427
Q gi|254780664|r    7 KDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGG   48 (536)
Q Consensus         7 ~~~~~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgG   48 (536)
                      .-..+|+++=|.|||+=..+-==..+|+.|.+.|..+.-++.
T Consensus        36 ~~~~~grL~GKvalVTGgs~GIG~aiA~~la~~GA~V~i~~~   77 (289)
T PRK06701         36 NYKGSGKLKGKVALITGGDSGIGRAVAVAFAKEGADIAIVYL   77 (289)
T ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             886688779998999682579999999999987998999828


No 165
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=30.98  E-value=20  Score=16.37  Aligned_cols=20  Identities=35%  Similarity=0.683  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCCCCCCCEEEE
Q ss_conf             23333436788100650576
Q gi|254780664|r  221 VKKQEMRYGENPHQKAALYS  240 (536)
Q Consensus       221 ~~~~~LRYGENPHQ~Aa~Y~  240 (536)
                      .+-.+=||||||.---.+|.
T Consensus        58 rRP~DgRYGeNPNRlq~y~Q   77 (291)
T PRK09348         58 RRPTDGRYGENPNRLQHYYQ   77 (291)
T ss_pred             CCCCCCCCCCCCHHHHHEEE
T ss_conf             78887754689124201055


No 166
>pfam05505 Ebola_NP Ebola nucleoprotein. This family consists of Ebola and Marburg virus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus.
Probab=30.90  E-value=28  Score=15.37  Aligned_cols=58  Identities=17%  Similarity=0.315  Sum_probs=45.0

Q ss_pred             EEEEEEEEECCCCHHHHHHHHHH---C-----------------------CCEEEEEHHHHHHHHHCCCC--EEEHHHHC
Q ss_conf             36989987545686999999998---7-----------------------99999942768999988995--17946534
Q gi|254780664|r   16 VKTALISVHNKTGVVEFASRLLS---R-----------------------GIKIISTGGTCQLLEEEGIP--VTSVFDIT   67 (536)
Q Consensus        16 ikrALiSV~dKtgl~~la~~L~~---~-----------------------g~~iisTgGTa~~l~~~gi~--v~~Vs~~T   67 (536)
                      +|.-.|+||+-++++++|+-.++   .                       .++.+-+.+..|||+.+|..  |++-..+|
T Consensus        18 VRqrvi~vy~vnnle~iCqlIIqAfeaGvDfqd~adsfLLmLClhHaYqgDyk~FleS~avkYLeghGfrFev~kk~gv~   97 (717)
T pfam05505        18 VRQKVIPVYDVNNLESICQLIIQAFEAGIDFQDNADSFLLMLCLHHAYQGDYKLFLESPAVKYLEGHGFRFEVRKKDGVT   97 (717)
T ss_pred             HHCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHCCCCEEEEEECCCHH
T ss_conf             13104557862659999999999997267644312447999999888612188773130778875277368885145646


Q ss_pred             CCCHHC
Q ss_conf             881651
Q gi|254780664|r   68 KFPEIM   73 (536)
Q Consensus        68 gfpEil   73 (536)
                      .+.|+|
T Consensus        98 Rleell  103 (717)
T pfam05505        98 RLEELL  103 (717)
T ss_pred             HHHHHC
T ss_conf             899856


No 167
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=30.68  E-value=28  Score=15.35  Aligned_cols=13  Identities=0%  Similarity=0.158  Sum_probs=6.8

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             8999999977998
Q gi|254780664|r   95 PAHMKFMQDHELE  107 (536)
Q Consensus        95 ~~~~~~l~~~~i~  107 (536)
                      ++|+.+.-++|.-
T Consensus        52 ~~DIp~yV~~G~~   64 (204)
T PRK13584         52 GSDVPIYVEQGMA   64 (204)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             6888999974986


No 168
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854    This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=30.59  E-value=24  Score=15.77  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=77.9

Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHCCCCC--CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC--
Q ss_conf             10589888312221200116776424556--72799961568656545201689999998533213200455542754--
Q gi|254780664|r  253 LVQGKPLSYNNINDLDAAFELVSEFRSQD--CAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREV--  328 (536)
Q Consensus       253 ql~GKeLSYNNllD~daA~~lv~ef~~~~--~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v--  328 (536)
                      +=+|=++.-|=--|-.+=|.+|..+-+..  .|.+-.++=.+-=|+|.-=|     +-|-++.     =||..-=..+  
T Consensus       188 ~Regl~f~~~i~SDCapL~~lv~~ll~~~g~~~~v~~~RD~TRGGLA~vLN-----E~A~~sg-----~~i~l~E~~iPV  257 (345)
T TIGR02124       188 VREGLGFETNIESDCAPLNGLVEALLAVGGYEPAVHAMRDATRGGLAAVLN-----EIAESSG-----VGIELEEEKIPV  257 (345)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH-----HHHHHHC-----CCEEEEECCCCC
T ss_conf             650255256733327765899999984379871423761678550478999-----9999619-----927998524788


Q ss_pred             CHHHH--HHH---------HH-HHHHHHEECCCCHHHHHHHHCCC---CCE-EEECCCCCCCCCCCCEECCCCHHH
Q ss_conf             21457--878---------86-54311112687989998851245---531-563167667776664020321022
Q gi|254780664|r  329 DQEVA--KEV---------IK-VFTEAIIAPTLSEEAADVLAKKP---SMR-FLKTSSLLDFHGEEIVLKTVSGGI  388 (536)
Q Consensus       329 d~~~A--~~I---------~~-~F~EvIiAP~f~~eAleiL~~KK---nlR-il~~~~~~~~~~~~~~~rsi~GG~  388 (536)
                      -+++.  -+|         ++ .|+ +++.|.+.+++|++||+.+   +-+ |+-  .-.+.......+++.+|+-
T Consensus       258 ~eeV~gaCE~LGldPl~lANEG~~v-~~V~~E~A~~vLe~lk~hp~G~~A~YiIG--~V~e~~~~~V~l~t~~G~~  330 (345)
T TIGR02124       258 KEEVKGACELLGLDPLYLANEGKLV-LAVPPEAAEKVLEILKSHPLGKDAAYIIG--EVVEKKEGLVVLKTAYGGK  330 (345)
T ss_pred             CHHHHHHHHHHCCCHHHHHCCCEEE-EEECHHHHHHHHHHHHHCCCCCCCCEEEE--EEEECCCCEEEEEECCCCE
T ss_conf             3789999986170325420476289-98283779999999860776433215630--1473798779997068840


No 169
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=30.16  E-value=25  Score=15.75  Aligned_cols=18  Identities=22%  Similarity=0.143  Sum_probs=8.5

Q ss_pred             HHEECCCCHHHHHHHHCC
Q ss_conf             111268798999885124
Q gi|254780664|r  343 AIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       343 vIiAP~f~~eAleiL~~K  360 (536)
                      +..-|=|+..|.+.|++-
T Consensus       248 ~~tH~vfs~~a~~~l~~~  265 (314)
T COG0462         248 AATHGVFSGAALERLEAS  265 (314)
T ss_pred             EEECHHHCHHHHHHHHCC
T ss_conf             998366070899998648


No 170
>PRK07454 short chain dehydrogenase; Provisional
Probab=30.07  E-value=39  Score=14.31  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=47.7

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             76136989987545686999999998799999942768999988995179465348816519855323715553553308
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r   92 (536)
                      +-++|.|||.=.-.-==...|+.|.+.|+.++-++-+...|++.      .+++.    -.++++..+.-        +-
T Consensus         3 ~~~mKvalITGas~GIG~a~A~~la~~G~~V~l~~R~~~~l~~~------~~e~~----~~g~~~~~~~~--------Dv   64 (241)
T PRK07454          3 LNSMPTALITGASRGIGKATALAFAKAGWDLALVARSQDALEAL------AEELR----STGVKVAAYSI--------DL   64 (241)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHHHH----HCCCCEEEEEE--------EC
T ss_conf             89998899917587899999999998799899998999999999------99999----65992899995--------18


Q ss_pred             CCHHHH----HHHHHCCCCCEEEEEEEC
Q ss_conf             898999----999977998414999948
Q gi|254780664|r   93 DNPAHM----KFMQDHELESIDLVVVNL  116 (536)
Q Consensus        93 ~~~~~~----~~l~~~~i~~IDlVvvNL  116 (536)
                      .++++.    +++.+ .+..||++|.|=
T Consensus        65 t~~~~v~~~~~~~~~-~~G~iDiLVnNA   91 (241)
T PRK07454         65 SNPEAIAPGIAELLE-QFGCPSVLINNA   91 (241)
T ss_pred             CCHHHHHHHHHHHHH-HCCCCCEEEECC
T ss_conf             999999999999999-759988999889


No 171
>PRK13135 consensus
Probab=29.97  E-value=39  Score=14.30  Aligned_cols=34  Identities=9%  Similarity=0.180  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHEECCCCHHHHHHHH---CCCCCEEEEC
Q ss_conf             788654311112687989998851---2455315631
Q gi|254780664|r  335 EVIKVFTEAIIAPTLSEEAADVLA---KKPSMRFLKT  368 (536)
Q Consensus       335 ~I~~~F~EvIiAP~f~~eAleiL~---~KKnlRil~~  368 (536)
                      ...+.=++.+|.||.-.|-.+-+.   ++.++-++.+
T Consensus       116 ~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~l~~I~l  152 (267)
T PRK13135        116 DAAAAGVDGVLLVDLPPEEAEEFKACADRHGLDVIFL  152 (267)
T ss_pred             HHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9997499747637899788899999998729618998


No 172
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=29.85  E-value=29  Score=15.23  Aligned_cols=57  Identities=21%  Similarity=0.131  Sum_probs=26.6

Q ss_pred             HHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHH-HHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf             7689999889951794653488165198553237155-53553308898999999977998414999948
Q gi|254780664|r   48 GTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKI-YGGILSIRDNPAHMKFMQDHELESIDLVVVNL  116 (536)
Q Consensus        48 GTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I-~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNL  116 (536)
                      .|.++|+++|+.+....+        ++|-  |-+.. ..+|-..--+++|+...-++|.-  |+=||-.
T Consensus        16 ~~~~ll~~~G~~~~~~~~--------~~R~--l~~~~~~~~i~~~~~r~~DIp~~V~~G~~--DlGI~G~   73 (212)
T PRK01686         16 ETLPLLAAAGIDPSEDPD--------KSRK--LIFPTPDPDVRFLLVRATDVPTYVEHGAA--DLGIVGK   73 (212)
T ss_pred             HHHHHHHHCCCCCCCCCC--------CCCE--EEEECCCCCEEEEEECHHHHHHHHHCCCC--CEEEEEH
T ss_conf             999999987997445788--------8741--78543899979999876888999977997--6886158


No 173
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.85  E-value=39  Score=14.29  Aligned_cols=44  Identities=20%  Similarity=0.193  Sum_probs=17.7

Q ss_pred             CCCHHHHHHHHCCCCCCCEEEEECCCCCC--CCCCCCHHHHHHHHHHHH
Q ss_conf             12001167764245567279996156865--654520168999999853
Q gi|254780664|r  266 DLDAAFELVSEFRSQDCAACVIVKHMNPC--GVATADTLVEAYRRALSC  312 (536)
Q Consensus       266 D~daA~~lv~ef~~~~~Pa~vIvKH~NPC--GvA~~~~~~~Ay~~A~~~  312 (536)
                      |.+..++++..+.+.   .|=+|-=.-|.  -+|-|..+-+|..+|++.
T Consensus        27 ~~e~s~~~~~~l~~~---GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~   72 (263)
T CHL00200         27 DIVITKKALKILDKK---GADIIELGIPYSDPLADGPIIQEASNRALKQ   72 (263)
T ss_pred             CHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             878999999999976---9999997898888666589999999999977


No 174
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=29.81  E-value=35  Score=14.59  Aligned_cols=16  Identities=44%  Similarity=0.696  Sum_probs=9.5

Q ss_pred             CEEEEECCCCCHHHHHHHHH
Q ss_conf             04555427542145787886
Q gi|254780664|r  319 GGIIAFNREVDQEVAKEVIK  338 (536)
Q Consensus       319 GGIIa~N~~vd~~~A~~I~~  338 (536)
                      ||+|.+|.    +.++.|.+
T Consensus       235 GGiIl~~~----e~~~kId~  250 (415)
T PRK00011        235 GGLILTNE----ELAKKINS  250 (415)
T ss_pred             CEEEEECC----HHHHHHHC
T ss_conf             60797340----66666541


No 175
>PRK13112 consensus
Probab=29.59  E-value=39  Score=14.26  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHEECCCCHHHHHHHH---CCCCCEEEEC
Q ss_conf             578788654311112687989998851---2455315631
Q gi|254780664|r  332 VAKEVIKVFTEAIIAPTLSEEAADVLA---KKPSMRFLKT  368 (536)
Q Consensus       332 ~A~~I~~~F~EvIiAP~f~~eAleiL~---~KKnlRil~~  368 (536)
                      .++...+.=++.+|-||.-.|.-+-+.   ++.++.++.+
T Consensus       115 F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~~i~~I~l  154 (279)
T PRK13112        115 FLTDAKAAGVDGLIVVDLPPEMDAELCIPAMKAGINFIRL  154 (279)
T ss_pred             HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999997399879846999788899999998578346998


No 176
>cd01310 TatD_DNAse TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=29.58  E-value=39  Score=14.26  Aligned_cols=29  Identities=14%  Similarity=-0.040  Sum_probs=15.9

Q ss_pred             HHHHHCCCCCC-EEEECHHHHHHHHHHHHC
Q ss_conf             99874015631-353089998988987530
Q gi|254780664|r  144 IRAAAKNHDYV-TILTNPQDYPLFLAEMDV  172 (536)
Q Consensus       144 iRAAAKN~~~V-~Vi~dp~dY~~~~~el~~  172 (536)
                      -||.+.+-..+ ++=++|.++..+++-.+.
T Consensus        22 ~~a~~~gv~~ii~~~~~~~~~~~~~~la~~   51 (251)
T cd01310          22 ARAREAGVIKIIVVGTDLKSSKRALELAKK   51 (251)
T ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             999986998899968999999999999975


No 177
>PRK09291 short chain dehydrogenase; Provisional
Probab=29.45  E-value=40  Score=14.24  Aligned_cols=120  Identities=14%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             EEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf             6989987545686-999999998799999942768999988995179465348816519855323715553553308898
Q gi|254780664|r   17 KTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNP   95 (536)
Q Consensus        17 krALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~   95 (536)
                      |++||.=.- +|| ..+|+.|.+.|+.++.++-+...+.+.-      ++    .+-.++++....-        +-.++
T Consensus         3 K~vLITGAs-sGIGraiA~~la~~G~~Vi~~~r~~~~l~~l~------~~----~~~~g~~~~~~~l--------Dv~~~   63 (257)
T PRK09291          3 KTILITGAG-SGFGREVALRLARKGHRVIAGVQIAPQVTELR------AE----AARRGLALRVEKL--------DLTDA   63 (257)
T ss_pred             CEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH------HH----HHHCCCCEEEEEC--------CCCCH
T ss_conf             989996898-58999999999987998999968789999999------99----9852995599989--------88999


Q ss_pred             HHHHHHHHCCCCCEEEEEEE-----CCCHHHHHCCCCCHHHHHHCC--CC-CCHHHHHHHHC-----CCCCCEEEECHHH
Q ss_conf             99999997799841499994-----888899731765311232002--33-43469998740-----1563135308999
Q gi|254780664|r   96 AHMKFMQDHELESIDLVVVN-----LYPFEESFCREDDYYTMVENI--DI-GGPSMIRAAAK-----NHDYVTILTNPQD  162 (536)
Q Consensus        96 ~~~~~l~~~~i~~IDlVvvN-----LYPF~~~v~~~~~~~~~IEnI--DI-GGpsmiRAAAK-----N~~~V~Vi~dp~d  162 (536)
                      .+.....   ...||++|.|     ..||.++     +.++.-+.+  .+ |-.-|.|+..+     +.-++..+++-.-
T Consensus        64 ~~~~~~~---~~~iDvLVNNAGi~~~g~i~e~-----~~~~~~~~~~vNv~g~~~ltq~~lp~M~~~~~G~IV~isS~ag  135 (257)
T PRK09291         64 IDRARAA---EWDVDVLLNNAGIGEAGALVDI-----PVELVRELFETNVFGPLELTQGVVRKMVARGKGKIVFVSSIAG  135 (257)
T ss_pred             HHHHHHC---CCCCCEEEECCCCCCCCCHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf             9999980---8999999989856899773449-----9999999999997999999999789998769968999878776


Q ss_pred             H
Q ss_conf             8
Q gi|254780664|r  163 Y  163 (536)
Q Consensus       163 Y  163 (536)
                      +
T Consensus       136 ~  136 (257)
T PRK09291        136 L  136 (257)
T ss_pred             C
T ss_conf             6


No 178
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=29.36  E-value=40  Score=14.23  Aligned_cols=17  Identities=12%  Similarity=0.190  Sum_probs=7.8

Q ss_pred             EECCCCCCHHHHHHHHH
Q ss_conf             93898779889999998
Q gi|254780664|r  504 IQPGGSVRDSEAITVAD  520 (536)
Q Consensus       504 iqPGGSirD~evI~aan  520 (536)
                      +.|-=-|-++|+=+.++
T Consensus       370 ~~PPl~it~~eid~~~~  386 (398)
T PRK03244        370 LAPPLIITDAQVDAFVA  386 (398)
T ss_pred             EECCCCCCHHHHHHHHH
T ss_conf             94995789999999999


No 179
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.29  E-value=40  Score=14.22  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             HHHHHHHHHCCCEEEEEHHHHHHHHH-CCCCEEEHHHHCCC
Q ss_conf             99999999879999994276899998-89951794653488
Q gi|254780664|r   30 VEFASRLLSRGIKIISTGGTCQLLEE-EGIPVTSVFDITKF   69 (536)
Q Consensus        30 ~~la~~L~~~g~~iisTgGTa~~l~~-~gi~v~~Vs~~Tgf   69 (536)
                      +||++.+.++|++|.-|.-+.|.-+- .++-|-+||..+-+
T Consensus        47 EEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~   87 (293)
T COG4079          47 EELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERG   87 (293)
T ss_pred             HHHHHHHHHCCCEEEEECCHHHHHCCCCCEEEEEEECCCCC
T ss_conf             99999999769779997164765223686799875203565


No 180
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=29.10  E-value=40  Score=14.20  Aligned_cols=50  Identities=24%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             ECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCC
Q ss_conf             73668685558999971995999389877988999999875977997478
Q gi|254780664|r  482 SEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGI  531 (536)
Q Consensus       482 SDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~  531 (536)
                      |-|+.|-|.-+..+.+.-....+-=||-||+.|....+=++|--++-||.
T Consensus       163 SGa~~~vp~~vi~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn  212 (231)
T pfam01884       163 SGAPGPVPEEVIAVKKVLDDARLIVGGGIKSGEKAKEMARAGADVIVTGN  212 (231)
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             99999989999999964689768996997999999999977999999797


No 181
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=29.01  E-value=28  Score=15.34  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.6

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7296888899999999998764
Q gi|254780664|r  444 IGSGQTSRVDSTRFAAIKAHNI  465 (536)
Q Consensus       444 iGaGQ~sRVda~~iA~~KA~~~  465 (536)
                      -|.|.++..+|+++|+.||-..
T Consensus        74 ~GGG~sgQa~Air~aIaRALv~   95 (147)
T PTZ00086         74 RGGGQVAQIYAIRQAIAKGIVA   95 (147)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHH
T ss_conf             6787989999999999999998


No 182
>KOG4226 consensus
Probab=28.99  E-value=15  Score=17.30  Aligned_cols=44  Identities=11%  Similarity=0.116  Sum_probs=19.2

Q ss_pred             HHHEE-CCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCH
Q ss_conf             11112-6879899988512455315631676677766640203210
Q gi|254780664|r  342 EAIIA-PTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSG  386 (536)
Q Consensus       342 EvIiA-P~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~G  386 (536)
                      .||+| -.|+..--|-|+=+|.-|+-++.. ++..++.|.-|...|
T Consensus       192 ~vVvaLYsFsssndeELsFeKGerleivd~-Pe~DPdWwkarn~~G  236 (379)
T KOG4226         192 HVVVALYSFSSSNDEELSFEKGERLEIVDK-PENDPDWWKARNARG  236 (379)
T ss_pred             EEEEEEECCCCCCHHHCCCCCCCEEEECCC-CCCCCHHHHHCCCCC
T ss_conf             999998314679722215445855574248-878806776404577


No 183
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=28.96  E-value=40  Score=14.18  Aligned_cols=18  Identities=33%  Similarity=0.239  Sum_probs=8.5

Q ss_pred             HHHHHHHCCCCEEEECCC
Q ss_conf             589999719959993898
Q gi|254780664|r  491 GIVEAIKAGVTAVIQPGG  508 (536)
Q Consensus       491 ~ie~aa~~Gi~aIiqPGG  508 (536)
                      .|+.|.++|+.+|.-.-|
T Consensus       178 Di~aA~~aG~~~i~v~~G  195 (228)
T PRK13222        178 DIQAAKAAGCPSVGVTYG  195 (228)
T ss_pred             HHHHHHHCCCEEEEECCC
T ss_conf             999999969949998789


No 184
>PRK09072 short chain dehydrogenase; Provisional
Probab=28.91  E-value=40  Score=14.18  Aligned_cols=123  Identities=15%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             CCEEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             6136989987545686-999999998799999942768999988995179465348816519855323715553553308
Q gi|254780664|r   14 IAVKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        14 ~~ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r   92 (536)
                      ++=|++||.=.-. || ..+|+.|.+.|+.++.++-+...|.+.-            .|+.++++..+.        ++-
T Consensus         3 l~~K~vlITGass-GIG~a~A~~la~~G~~vil~~R~~~~L~~~~------------~~l~~~~~~~~~--------~Dl   61 (262)
T PRK09072          3 LKDKRVLLTGASG-GIGEALAEALCAAGARLLLVGRNAEKLEALA------------ARPYPGRVRWVV--------ADL   61 (262)
T ss_pred             CCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH------------HHHCCCCEEEEE--------EEC
T ss_conf             8998899948623-9999999999987998999989899999999------------984589769999--------717


Q ss_pred             CCHHHHHHHHH--CCCCCEEEEEEEC-----CCHHHHHCCCCCHHHHHHCCCC-CCHHHHHHHHC-----CCCCCEEEEC
Q ss_conf             89899999997--7998414999948-----8889973176531123200233-43469998740-----1563135308
Q gi|254780664|r   93 DNPAHMKFMQD--HELESIDLVVVNL-----YPFEESFCREDDYYTMVENIDI-GGPSMIRAAAK-----NHDYVTILTN  159 (536)
Q Consensus        93 ~~~~~~~~l~~--~~i~~IDlVvvNL-----YPF~~~v~~~~~~~~~IEnIDI-GGpsmiRAAAK-----N~~~V~Vi~d  159 (536)
                      .++++.+.+.+  .....||++|-|=     -||+++-  ...++++++ +.. |--.+.|++..     +..++..+++
T Consensus        62 s~~~~~~~~~~~~~~~g~iDiLInNAG~~~~~~~~~~~--~~~~~~~~~-vN~~g~~~lt~~~lp~m~~~~~G~IvnisS  138 (262)
T PRK09072         62 TSEAGREAVLARAREMGGINVLINNAGVNHFALLDQQD--PEAIDRLLA-LNLTAPMQLTRALLPLLRAQPSAAVVNVGS  138 (262)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCC--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             99999999999999849998999899778898635499--999999999-956899999999999998769948999668


Q ss_pred             H
Q ss_conf             9
Q gi|254780664|r  160 P  160 (536)
Q Consensus       160 p  160 (536)
                      .
T Consensus       139 ~  139 (262)
T PRK09072        139 T  139 (262)
T ss_pred             H
T ss_conf             6


No 185
>TIGR00732 dprA DNA protecting protein DprA; InterPro: IPR003488 The SMF family (DNA processing chain A, dprA) are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation .; GO: 0009294 DNA mediated transformation.
Probab=28.84  E-value=40  Score=14.17  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             0001246777868898889999998600566779999
Q gi|254780664|r  400 KELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYA  436 (536)
Q Consensus       400 ~~~~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~a  436 (536)
                      ..|=+|-.|.||..=   ..-+-+.++..--|.++|+
T Consensus        60 ~~~aiVGTR~pT~~g---~~~~~~l~~~la~~G~~Iv   93 (238)
T TIGR00732        60 RKVAIVGTRRPTKYG---ERWTRKLSKELAKNGVTIV   93 (238)
T ss_pred             EEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCEEE
T ss_conf             057677437655447---9999999999865794898


No 186
>TIGR01584 citF citrate lyase, alpha subunit; InterPro: IPR006472   These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis has been experimentally characterised . ; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=28.83  E-value=22  Score=16.16  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=12.2

Q ss_pred             HHHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf             9999999879999994276899998
Q gi|254780664|r   31 EFASRLLSRGIKIISTGGTCQLLEE   55 (536)
Q Consensus        31 ~la~~L~~~g~~iisTgGTa~~l~~   55 (536)
                      +..|++-+.=|-|=|-||=|+.++.
T Consensus       113 ~iS~G~Lk~PViirSHGGRarave~  137 (496)
T TIGR01584       113 EISKGILKKPVIIRSHGGRARAVES  137 (496)
T ss_pred             HHHHHHHCCCEEEEECCCEEEEEEC
T ss_conf             8736440388478607872778824


No 187
>KOG4627 consensus
Probab=28.72  E-value=41  Score=14.15  Aligned_cols=51  Identities=18%  Similarity=0.466  Sum_probs=29.9

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             123333436788100650576047766821012105898883122212001167764
Q gi|254780664|r  220 AVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSE  276 (536)
Q Consensus       220 ~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNNllD~daA~~lv~e  276 (536)
                      ..+...||||||--|+--.+++.... .+  |.-+||   +|=-.-|.--.+..|.-
T Consensus        42 i~r~e~l~Yg~~g~q~VDIwg~~~~~-kl--fIfIHG---GYW~~g~rk~clsiv~~   92 (270)
T KOG4627          42 IIRVEHLRYGEGGRQLVDIWGSTNQA-KL--FIFIHG---GYWQEGDRKMCLSIVGP   92 (270)
T ss_pred             CCCHHCCCCCCCCCEEEEEECCCCCC-CE--EEEEEC---CHHHCCCHHCCCCHHHH
T ss_conf             66211025578876589876577776-08--999936---61330752103020115


No 188
>KOG0673 consensus
Probab=28.67  E-value=35  Score=14.61  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=16.9

Q ss_pred             HHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHH
Q ss_conf             99998799999942768999988995179465
Q gi|254780664|r   34 SRLLSRGIKIISTGGTCQLLEEEGIPVTSVFD   65 (536)
Q Consensus        34 ~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~   65 (536)
                      +.|.+.|+.|+-+-|...||...|+..+++-|
T Consensus        79 k~l~~kgv~IWd~ngsrefLds~G~~~re~GD  110 (293)
T KOG0673          79 KVLEEKGVHIWDGNGSREFLDSVGFTAREEGD  110 (293)
T ss_pred             CHHHHCCCEEECCCCHHHHHHHCCCCCCCCCC
T ss_conf             13654584651487618889853987000377


No 189
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=28.58  E-value=37  Score=14.47  Aligned_cols=47  Identities=26%  Similarity=0.162  Sum_probs=32.3

Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             615686565452016899999985332132004555427542145787
Q gi|254780664|r  288 VKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKE  335 (536)
Q Consensus       288 vKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~  335 (536)
                      .-|++=|- |+.+-+.+|.+.|-.+|-+=--||-=.-|..-=.++|+.
T Consensus       184 ~v~nTIC~-AT~~RQ~a~~~LA~~vD~miVVGG~nSSNT~rL~eia~~  230 (670)
T PRK00087        184 KVFNTICN-ATAVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKS  230 (670)
T ss_pred             CCCCCCCH-HHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             67898544-268899999999865999999899897259999999997


No 190
>TIGR00568 alkb alkylated DNA repair protein AlkB; InterPro: IPR004574 Proteins repair alkylation damage to DNA. The Escherichia coli alkB gene product protects against cell killing by S(N)2-alkylating agents through DNA repair by a novel direct reversal DNA repair mechanism: the oxidative demethylation of N1-methyladenine or N3-methylcytosine DNA lesions. This reaction occurs on both single- and double-stranded DNA, and requires AlkB-bound non-heme Fe(2+), O(2) and alpha-ketogluterate to oxidize the offending methyl group. This is followed by the release of succinate, CO(2) and formaldehyde, and the restoration of undamaged A or C in DNA .; GO: 0006281 DNA repair.
Probab=28.57  E-value=21  Score=16.18  Aligned_cols=90  Identities=20%  Similarity=0.307  Sum_probs=58.2

Q ss_pred             CHHHHHHH--HHHHHHHH--CCCCCEEEEE--ECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             68898889--99999860--0566779999--689389972968888999999999987642001222234870999736
Q gi|254780664|r  411 TDQELRDM--KFAFKVVK--HVKSNAVVYA--KDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEA  484 (536)
Q Consensus       411 t~~e~~dL--~FA~kv~K--~vkSNAIv~a--k~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDA  484 (536)
                      =++.+-||  .-+|.++-  +.|-.|=++=  .-|.++|+=.             .|-    +              .|-
T Consensus       101 ~P~~L~~L~~~~v~~~~gf~~~~aeA~lvN~Y~~g~~Ls~H~-------------D~~----E--------------~D~  149 (199)
T TIGR00568       101 FPKDLGDLVEKRVATALGFPDFKAEACLVNFYAPGATLSLHQ-------------DRD----E--------------EDL  149 (199)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCC-------------CCC----C--------------CCC
T ss_conf             556788899999998728866782304540347887002310-------------376----5--------------566


Q ss_pred             CCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCC-CCCCC
Q ss_conf             68685558999971995999389877988999999875977997478-54479
Q gi|254780664|r  485 FYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGI-RHFRH  536 (536)
Q Consensus       485 FFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~-RhF~H  536 (536)
                      =+|.     +-...|-+||-|=||--|++.--.--=+.|=.|+++|. |.|-|
T Consensus       150 ~~PL-----~S~SlG~~AiF~~Gg~~R~e~~~~L~L~sGDv~~~~G~SRl~fH  197 (199)
T TIGR00568       150 RLPL-----LSLSLGLSAIFLIGGLKRDEPPKALRLHSGDVVIMSGESRLAFH  197 (199)
T ss_pred             CCCE-----EEEECCCHHHHHHCCCCCCCCCCHHHHHCCCEEEECCCHHHHHC
T ss_conf             8875-----66653611454407745565561225424987885551224213


No 191
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase; InterPro: IPR012703   Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. 2-Aminoethylphosphonate (AEP), the most common naturally occurring phosphonate, is an important precursor used in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans.   This entry represents 2-aminoethylphosphonate-pyruvate transaminase (AEPT)(2.6.1.37 from EC) which catalyses the interconversion of AEP and phosphonoacetaldehyde (P-Ald), coupled with the interconversion of pryuvate and L-alanine. In some bacterial species this is the first step in an AEP degradation pathway which allows them to utilise this compound as a source of carbon, nitrogen and phosphorus. Phosphonoacetaldeyhde hydrolase, often encoded by an adjacent gene, then converts P-Ald to acetaldehyde and phosphate.Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lyase complex as found in Escherichia coli.   The crystal structure of AEPT from Salmonella typhimurium has been studied to 2.2 A resolution . The protein is a homodimer where each subunit is composed of two domains, large and small. The large domain forms an alpha-beta complex characteristic of the aspartate transaminase family, while the small domain is comosed of highly twisted beta strands. The active site contains a pyridoxal 5'-phosphate cofactor and is found at the domain interface, being composed of residues from both subunits..
Probab=28.50  E-value=17  Score=16.85  Aligned_cols=127  Identities=21%  Similarity=0.290  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--CCCCHH-H-HHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             66678899999999987422899998---75331--012113-4-43210123333436788100650576047766821
Q gi|254780664|r  177 IPYNFRKKMARQAFSRTASYDTAICR---WLANA--ESENFP-D-YLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIA  249 (536)
Q Consensus       177 ~~~~~R~~lA~kAF~~ta~YD~~Ia~---~l~~~--~~~~~p-~-~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~  249 (536)
                      +...-|++|-.-|=.+-..|-+..-+   -|+-.  .+.-.| . -..+   -..+==||.-=-|-|.+|..+.      
T Consensus        37 ~~~~ir~~L~~la~~~~~~YT~VllQGSGtf~VEA~iGs~~pr~~~klL---v~~NGAYG~R~~~ia~~l~i~~------  107 (366)
T TIGR02326        37 VVESIRQKLLKLATAEEEKYTTVLLQGSGTFAVEAVIGSAVPRKDGKLL---VVINGAYGKRIAQIAEYLQIPH------  107 (366)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEE---EEECCCHHHHHHHHHHHHCCCE------
T ss_conf             7999999999986068985467861275125556654112478897389---9717853478999999847861------


Q ss_pred             CHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CHHHHH-------HHHHHHHCCCCCCCEE
Q ss_conf             01210589888312221200116776424556727999615686565452-016899-------9999853321320045
Q gi|254780664|r  250 HAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATA-DTLVEA-------YRRALSCDPISAFGGI  321 (536)
Q Consensus       250 ~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~-~~~~~A-------y~~A~~~DP~SAFGGI  321 (536)
                        ..++-.|-+--|+.++++.++-=.+.     .=+|+| |   |=-.+| =|+.+|       |=+..=-|-+|+||||
T Consensus       108 --~~~~~~E~~~~~~~~ve~~L~~dp~I-----tH~A~v-H---cETtTGiLNPi~~~~~~~~~hGk~~ivDAMSSfGgi  176 (366)
T TIGR02326       108 --HVVETEENEPTNVVEVEAILAADPAI-----THVALV-H---CETTTGILNPIEAVAKVAKRHGKVTIVDAMSSFGGI  176 (366)
T ss_pred             --EEEECCCCCCCCHHHHHHHHHCCCCC-----EEEEEE-E---CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             --67515877777889999998518971-----278898-3---675266211289999999855977998534113760


Q ss_pred             EE
Q ss_conf             55
Q gi|254780664|r  322 IA  323 (536)
Q Consensus       322 Ia  323 (536)
                      =.
T Consensus       177 ~i  178 (366)
T TIGR02326       177 PI  178 (366)
T ss_pred             HH
T ss_conf             01


No 192
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=28.43  E-value=41  Score=14.12  Aligned_cols=34  Identities=29%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             321320045554275421457878865431111268798999885124
Q gi|254780664|r  313 DPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       313 DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      ++++|+|-+|.+|...              .++-|+|+++|++....-
T Consensus        96 ~k~nAlGN~Il~ND~~--------------Alvhp~l~~~a~k~I~d~  129 (222)
T COG1976          96 TKLNALGNLILANDKG--------------ALVHPDLSDEAEKEIEDV  129 (222)
T ss_pred             CCCCCCCCEEEECCCC--------------EEECCCCCHHHHHHHHHH
T ss_conf             5010115589965830--------------386676487799998764


No 193
>KOG0923 consensus
Probab=28.34  E-value=41  Score=14.11  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=18.3

Q ss_pred             HHCCCCCCHHHHHHHHCCCC-----CCEEEECHHHHHHHHHHH
Q ss_conf             20023343469998740156-----313530899989889875
Q gi|254780664|r  133 VENIDIGGPSMIRAAAKNHD-----YVTILTNPQDYPLFLAEM  170 (536)
Q Consensus       133 IEnIDIGGpsmiRAAAKN~~-----~V~Vi~dp~dY~~~~~el  170 (536)
                      -|.--+ +-+|++..||+-+     +-.|.+|-. --.|+.+.
T Consensus       194 WEd~ql-~~a~~~~ga~~~~~~~~~ye~vfdd~~-~idF~~e~  234 (902)
T KOG0923         194 WEDHQL-GNAMLKFGAKDAKEGSDGYEFVFDDQI-VIDFIQES  234 (902)
T ss_pred             HHHHHH-HHHHHHCCCCCCCCCCCCCEEECCCHH-HHHHHHHH
T ss_conf             899986-655764278757555667501325315-56377764


No 194
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=28.32  E-value=35  Score=14.64  Aligned_cols=20  Identities=40%  Similarity=0.547  Sum_probs=15.3

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             20045554275421457878865
Q gi|254780664|r  317 AFGGIIAFNREVDQEVAKEVIKV  339 (536)
Q Consensus       317 AFGGIIa~N~~vd~~~A~~I~~~  339 (536)
                      .=||+|-+|.   +++++.|.+-
T Consensus       234 PrGG~Il~~~---eel~kkin~a  253 (413)
T COG0112         234 PRGGIILTND---EELAKKINSA  253 (413)
T ss_pred             CCCEEEEECC---HHHHHHHHHH
T ss_conf             9841798362---9999876400


No 195
>PRK08267 short chain dehydrogenase; Provisional
Probab=28.30  E-value=41  Score=14.10  Aligned_cols=80  Identities=15%  Similarity=0.048  Sum_probs=45.4

Q ss_pred             EEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             36989987545686-99999999879999994276899998899517946534881651985532371555355330889
Q gi|254780664|r   16 VKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDN   94 (536)
Q Consensus        16 ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~   94 (536)
                      ||++||.=.-. || ..+|+.|.+.|+.++-++-....|++.-      +++.      ++++.+.+-        +-.+
T Consensus         1 MK~vlITGass-GIG~a~A~~~a~~G~~V~~~~r~~~~l~~~~------~~l~------~~~~~~~~~--------Dvtd   59 (258)
T PRK08267          1 MKSIFITGAAS-GIGRATARLFAARGWRVGAYDINEDGLAALA------AELG------AERAWTGAL--------DVTD   59 (258)
T ss_pred             CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH------HHHC------CCCEEEEEE--------CCCC
T ss_conf             99899907226-8999999999987999999988899999999------9836------996799991--------1799


Q ss_pred             HHHH----HHHHHCCCCCEEEEEEEC
Q ss_conf             8999----999977998414999948
Q gi|254780664|r   95 PAHM----KFMQDHELESIDLVVVNL  116 (536)
Q Consensus        95 ~~~~----~~l~~~~i~~IDlVvvNL  116 (536)
                      +++.    ++..+.....||++|.|=
T Consensus        60 ~~~v~~~~~~~~~~~~G~iDiLVNNA   85 (258)
T PRK08267         60 RAAWDAALADFCAATGGRLDVLFNNA   85 (258)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             99999999999999589986899888


No 196
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=28.14  E-value=42  Score=14.08  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCEEEEE
Q ss_conf             88999999860056677999968938997
Q gi|254780664|r  416 RDMKFAFKVVKHVKSNAVVYAKDGRTVGI  444 (536)
Q Consensus       416 ~dL~FA~kv~K~vkSNAIv~ak~~~tiGi  444 (536)
                      ...+|+.--.+..|.-+|..+-+...-|=
T Consensus       182 taaLf~la~l~G~ka~sv~~V~dnl~t~e  210 (235)
T PRK05819        182 AAALYGLAAEYGAKALTILTVSDHIRTGE  210 (235)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEEEEECCCC
T ss_conf             89999999981986799999963305688


No 197
>PRK00035 hemH ferrochelatase; Reviewed
Probab=27.87  E-value=42  Score=14.05  Aligned_cols=15  Identities=13%  Similarity=0.483  Sum_probs=8.7

Q ss_pred             HHEECCCCHHHHHHH
Q ss_conf             111268798999885
Q gi|254780664|r  343 AIIAPTLSEEAADVL  357 (536)
Q Consensus       343 vIiAP~f~~eAleiL  357 (536)
                      +|+.|+|..|-+|.|
T Consensus       262 ~v~p~gFvsD~lETl  276 (325)
T PRK00035        262 VVVPPGFVSDHLETL  276 (325)
T ss_pred             EEECCCCCCCCHHHH
T ss_conf             998982045344659


No 198
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=27.36  E-value=43  Score=13.99  Aligned_cols=28  Identities=36%  Similarity=0.743  Sum_probs=12.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             988831222120011677642455672799961
Q gi|254780664|r  257 KPLSYNNINDLDAAFELVSEFRSQDCAACVIVK  289 (536)
Q Consensus       257 KeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvK  289 (536)
                      ....||++-++.   +++.+..  +..||+|+-
T Consensus       167 ~~~~y~d~~~le---~~~~~~~--~~iAAvIvE  194 (431)
T PRK06209        167 KTFRYNDIASLE---ALFEDYP--GRIACVILE  194 (431)
T ss_pred             CCCCCCCHHHHH---HHHHHCC--CCEEEEEEE
T ss_conf             564765599999---9876455--666788850


No 199
>pfam08727 P3A Poliovirus 3A protein like. This domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.
Probab=27.22  E-value=35  Score=14.64  Aligned_cols=15  Identities=27%  Similarity=0.406  Sum_probs=10.0

Q ss_pred             CCCHHHHHHHHHHCC
Q ss_conf             779889999998759
Q gi|254780664|r  509 SVRDSEAITVADQHG  523 (536)
Q Consensus       509 SirD~evI~aan~~g  523 (536)
                      |++-+||+++|.+.|
T Consensus        26 SVds~EVr~YC~~kg   40 (57)
T pfam08727        26 SVDSPEVREYCEKKG   40 (57)
T ss_pred             HCCCHHHHHHHHHCC
T ss_conf             658799999999779


No 200
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.20  E-value=43  Score=13.97  Aligned_cols=12  Identities=8%  Similarity=0.266  Sum_probs=5.1

Q ss_pred             CCHHHHHHHHCC
Q ss_conf             200116776424
Q gi|254780664|r  267 LDAAFELVSEFR  278 (536)
Q Consensus       267 ~daA~~lv~ef~  278 (536)
                      +...++-++++.
T Consensus       193 ~~~~v~~vr~~~  204 (265)
T COG0159         193 VKELVKRVRKYT  204 (265)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999744


No 201
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein; InterPro: IPR005675    This model represents largely uncharacterised proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distinct. ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=27.20  E-value=43  Score=13.97  Aligned_cols=84  Identities=18%  Similarity=0.266  Sum_probs=41.9

Q ss_pred             CCCHHHHH---HHHHCCCCCEEEEEEECCCHHHHHCCCC--CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHH
Q ss_conf             88989999---9997799841499994888899731765--311232002334346999874015631353089998988
Q gi|254780664|r   92 RDNPAHMK---FMQDHELESIDLVVVNLYPFEESFCRED--DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLF  166 (536)
Q Consensus        92 r~~~~~~~---~l~~~~i~~IDlVvvNLYPF~~~v~~~~--~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~  166 (536)
                      --||+|..   .+++.+++...++     -|..|-.-..  ..+..|       -|||.|..   +.||+---.=|- -|
T Consensus        46 gaNPKD~~FF~~~~~~~~~~~~~~-----AF~STRRP~~~v~~D~~~-------~~l~~A~T---~~~TIFGKSWDL-HV  109 (543)
T TIGR00977        46 GANPKDVAFFEKVKEMNFKNAKIV-----AFSSTRRPDKKVEEDKQV-------QALIKAET---PVVTIFGKSWDL-HV  109 (543)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEE-----EEECCCCCCCCCCCCHHH-------HHHHHCCC---EEEEEECCCHHH-HH
T ss_conf             987256899999852771100466-----752367886332334567-------89872698---169985473578-88


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             987530234566678899999999987422
Q gi|254780664|r  167 LAEMDVNNGKIPYNFRKKMARQAFSRTASY  196 (536)
Q Consensus       167 ~~el~~~~g~~~~~~R~~lA~kAF~~ta~Y  196 (536)
                      .+.|+     ++|+...+|-...-++.-.|
T Consensus       110 ~~aL~-----T~L~ENL~MI~dTv~YLk~~  134 (543)
T TIGR00977       110 LEALK-----TTLEENLKMIYDTVAYLKRY  134 (543)
T ss_pred             HHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf             88776-----42999999999999999872


No 202
>PRK13324 pantothenate kinase; Reviewed
Probab=27.13  E-value=43  Score=13.96  Aligned_cols=14  Identities=14%  Similarity=0.242  Sum_probs=6.0

Q ss_pred             HHHHHHEECCCCHH
Q ss_conf             54311112687989
Q gi|254780664|r  339 VFTEAIIAPTLSEE  352 (536)
Q Consensus       339 ~F~EvIiAP~f~~e  352 (536)
                      .|.=++|+|+..--
T Consensus       145 ~~lGG~I~PGl~l~  158 (258)
T PRK13324        145 KYLSGSIMPGVKLS  158 (258)
T ss_pred             CEEEEEECCCHHHH
T ss_conf             68899988459999


No 203
>TIGR00109 hemH ferrochelatase; InterPro: IPR001015 Synonym(s): Protoheme ferro-lyase, Iron chelatase, etc.   Ferrochelatase catalyzes the last step in heme biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protoheme , . In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane.   The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved , . The human enzyme exists as a homodimer. Each subunit contains one [Fe2S2] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [Fe2S2]cluster and in stabilisation of the homodimer. The [Fe2S2] cluster ligands are Cys196, Cys403, Cys406 and Cys411. The experiments with Co(II) binding show that His230 and Asp383 are part of the enzyme active site .   Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release .; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process.
Probab=27.12  E-value=43  Score=13.96  Aligned_cols=17  Identities=6%  Similarity=0.253  Sum_probs=13.6

Q ss_pred             HHEECCCCHHHHHHHHC
Q ss_conf             11126879899988512
Q gi|254780664|r  343 AIIAPTLSEEAADVLAK  359 (536)
Q Consensus       343 vIiAP~f~~eAleiL~~  359 (536)
                      +||.|+|+-|.+|.|..
T Consensus       281 ~~~P~gF~~Dh~ETL~E  297 (339)
T TIGR00109       281 VVVPIGFTADHLETLYE  297 (339)
T ss_pred             EEECCCCHHHHHHHHHH
T ss_conf             99886301245788887


No 204
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033    Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=27.01  E-value=22  Score=16.03  Aligned_cols=25  Identities=16%  Similarity=0.130  Sum_probs=15.0

Q ss_pred             HHEECCCCHHHHHHHHCCC-CCEEEE
Q ss_conf             1112687989998851245-531563
Q gi|254780664|r  343 AIIAPTLSEEAADVLAKKP-SMRFLK  367 (536)
Q Consensus       343 vIiAP~f~~eAleiL~~KK-nlRil~  367 (536)
                      +=+=|+.++|-++.+..|. ..-+|+
T Consensus       225 ik~yPGl~~di~~~~~~~~YkGiVie  250 (347)
T TIGR00519       225 IKLYPGLSPDIIRAYLSKGYKGIVIE  250 (347)
T ss_pred             EEECCCCCHHHHHHHCCCCCEEEEEE
T ss_conf             98668988899998626993489982


No 205
>pfam00380 Ribosomal_S9 Ribosomal protein S9/S16. This family includes small ribosomal subunit S9 from prokaryotes and S16 from eukaryotes.
Probab=26.96  E-value=27  Score=15.45  Aligned_cols=49  Identities=12%  Similarity=0.079  Sum_probs=29.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6889888999999860056677999968938997296888899999999998764
Q gi|254780664|r  411 TDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNI  465 (536)
Q Consensus       411 t~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~  465 (536)
                      ++.....+..-..++.....      .|-...=-|.|.++..+|+++|+.||-..
T Consensus        32 ~~~~r~~v~~Pl~~~~~~~~------~Di~i~V~GGG~sgQa~AirlaIaRaLv~   80 (121)
T pfam00380        32 NETLRMKILEPLELTGTLGK------FDIVVTVKGGGISGQAGAIRLAIARALVA   80 (121)
T ss_pred             CHHHHHHHHHHHHHHHHCCC------CCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             89999999979998600466------42699996888858999999999999999


No 206
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=26.96  E-value=40  Score=14.17  Aligned_cols=26  Identities=15%  Similarity=0.333  Sum_probs=12.3

Q ss_pred             CCCCCCCCHHHHHHH-HHHHHHHHCCC
Q ss_conf             246777868898889-99999860056
Q gi|254780664|r  404 VVTKRSPTDQELRDM-KFAFKVVKHVK  429 (536)
Q Consensus       404 vVT~~~pt~~e~~dL-~FA~kv~K~vk  429 (536)
                      -+|.|--.++|+... .|--++++..+
T Consensus       423 a~TtRGm~e~em~~ia~~I~~~l~~~~  449 (493)
T PRK13580        423 ALTTLGMGSDEMDEVAELIVKVLRNTT  449 (493)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             676189998999999999999995524


No 207
>PRK10425 DNase TatD; Provisional
Probab=26.78  E-value=44  Score=13.92  Aligned_cols=32  Identities=19%  Similarity=-0.010  Sum_probs=19.5

Q ss_pred             HHHHHCCCCCCEEE-ECHHHHHHHHHHHHCCCC
Q ss_conf             99874015631353-089998988987530234
Q gi|254780664|r  144 IRAAAKNHDYVTIL-TNPQDYPLFLAEMDVNNG  175 (536)
Q Consensus       144 iRAAAKN~~~V~Vi-~dp~dY~~~~~el~~~~g  175 (536)
                      =||.+.+-..+.++ +||++....++--+...+
T Consensus        22 ~rA~~~gV~~ii~~g~~~~~~~~~~~la~~~~~   54 (258)
T PRK10425         22 ARAFAAGVNGLLITGTNLRESQQAQKLARQYPS   54 (258)
T ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             999987999899946999999999999986887


No 208
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=26.77  E-value=29  Score=15.17  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=25.7

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf             23343469998740156313530899989
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~  164 (536)
                      -|||+-.++.|+..|+.-+.++.|-.-|.
T Consensus       105 ~dIG~~~l~ha~~Rn~~i~~iv~DNe~Y~  133 (300)
T PRK11864        105 ADIGFQALSGAAERGHDILYIMYDNEAYM  133 (300)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCEEE
T ss_conf             54006878999982898599998571310


No 209
>KOG0525 consensus
Probab=26.70  E-value=44  Score=13.91  Aligned_cols=86  Identities=20%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCH----HHHH--CCC
Q ss_conf             4555427542145787886543111126879899988512455315631676677766640203210----2231--012
Q gi|254780664|r  320 GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSG----GILV--QTR  393 (536)
Q Consensus       320 GIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~G----G~Lv--Q~~  393 (536)
                      ||+.|---+-..-|..|.++-+---|-|.|++=.-|--|    -|+-.   ...++...+.+|+-+|    |-|.  |++
T Consensus        98 givgfgig~aa~g~~aiaeiqfadyifpafdqivneaak----fryrs---gnqfncg~ltir~p~gavghg~~yhsqsp  170 (362)
T KOG0525          98 GIVGFGIGLAAMGATAIAEIQFADYIFPAFDQIVNEAAK----FRYRS---GNQFNCGGLTIRAPWGAVGHGALYHSQSP  170 (362)
T ss_pred             CCCEECHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHH----HEECC---CCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             542001312540661588885022122558999878776----25235---78445676577455442455530156882


Q ss_pred             CCCCC-CCCCCCCCCCCCCH
Q ss_conf             33453-10001246777868
Q gi|254780664|r  394 DNVVD-NKELTVVTKRSPTD  412 (536)
Q Consensus       394 D~~~~-~~~~~vVT~~~pt~  412 (536)
                      ....- -.-+|+|--|.|.+
T Consensus       171 eaff~h~pgikvviprsp~q  190 (362)
T KOG0525         171 EAFFCHVPGIKVVIPRSPRQ  190 (362)
T ss_pred             HHHEECCCCCEEEECCCCCH
T ss_conf             35300489836982489504


No 210
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=26.69  E-value=33  Score=14.78  Aligned_cols=70  Identities=21%  Similarity=0.341  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHCCCC--CEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf             89999998600566--7799996893899729688889999999999876420012222348709997366868555899
Q gi|254780664|r  417 DMKFAFKVVKHVKS--NAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVE  494 (536)
Q Consensus       417 dL~FA~kv~K~vkS--NAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~  494 (536)
                      |..|...+-+.++.  +-|+..-|..--|-..|+.-   -..+|..||-|.+..          ++             .
T Consensus       162 E~~f~~~~r~~~~~ga~~lv~~tNdaWfg~s~~~~Q---hl~~ar~RAiE~~r~----------~v-------------r  215 (270)
T cd07571         162 ESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQ---HLAMARLRAIETGRP----------LV-------------R  215 (270)
T ss_pred             HHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH---HHHHHHHHHHHHCCC----------EE-------------E
T ss_conf             343649999986448709999736645678841799---999989889982996----------39-------------8


Q ss_pred             HHHCCCCEEEECCCCCCH
Q ss_conf             997199599938987798
Q gi|254780664|r  495 AIKAGVTAVIQPGGSVRD  512 (536)
Q Consensus       495 aa~~Gi~aIiqPGGSirD  512 (536)
                      +++.||+++|-|-|.|..
T Consensus       216 ~~ntGiSa~Id~~G~i~~  233 (270)
T cd07571         216 AANTGISAVIDPDGRIVA  233 (270)
T ss_pred             ECCCEEEEEECCCCCEEE
T ss_conf             669626899999987888


No 211
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.68  E-value=44  Score=13.91  Aligned_cols=29  Identities=24%  Similarity=0.525  Sum_probs=17.6

Q ss_pred             EEEEEEE--CCCCHH-HHHHHHHHCCCEEEEE
Q ss_conf             9899875--456869-9999999879999994
Q gi|254780664|r   18 TALISVH--NKTGVV-EFASRLLSRGIKIIST   46 (536)
Q Consensus        18 rALiSV~--dKtgl~-~la~~L~~~g~~iisT   46 (536)
                      ||.|+|+  ||.||+ .+++.|.++|+.|.-.
T Consensus         1 kaVITviG~Dr~GIVa~vt~~Lae~~iNI~Di   32 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDI   32 (88)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             96999977998878999999999869988953


No 212
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=26.55  E-value=44  Score=13.89  Aligned_cols=29  Identities=10%  Similarity=0.135  Sum_probs=24.7

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEE
Q ss_conf             9855323715553553308898999999977998414
Q gi|254780664|r   74 GGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESID  110 (536)
Q Consensus        74 ~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~ID  110 (536)
                      +..|-||+|-||        |+.-++.|++.|+..+|
T Consensus        30 ~~~iytlG~iIH--------N~~vv~~L~~~Gv~~v~   58 (304)
T PRK01045         30 GAPIYVRHEIVH--------NKYVVERLKKKGAIFVE   58 (304)
T ss_pred             CCCEEEECCCCC--------CHHHHHHHHHCCCEEEC
T ss_conf             996898478864--------98999999988699961


No 213
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.41  E-value=40  Score=14.21  Aligned_cols=70  Identities=17%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             HHHHHHHHCCCEEEEEHHHHHHHHHCCCC-----EEEHH--HHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999998799999942768999988995-----17946--534881651985532371555355330889899999997
Q gi|254780664|r   31 EFASRLLSRGIKIISTGGTCQLLEEEGIP-----VTSVF--DITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQD  103 (536)
Q Consensus        31 ~la~~L~~~g~~iisTgGTa~~l~~~gi~-----v~~Vs--~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~  103 (536)
                      +|.+.|.++|+++---+=|.+.-+..|.=     ..++.  ....||   |.||=||||-||        ||.=.+.|++
T Consensus        28 ~~i~~~~~~~~~~~~g~~~i~LA~~~GFC~GVeRAI~ia~ea~~~~p---~~~Iy~~geIIH--------Np~Vv~~L~~   96 (392)
T PRK13371         28 SLIQSIRDNGYVLQRGDVTIKLAEAFGFCWGVERAVAMAYETRRHFP---DERIWITNEIIH--------NPSVNQHLRE   96 (392)
T ss_pred             HHHHHHHHCCCEEEECCEEEEEHHHCCCCCCHHHHHHHHHHHHHHCC---CCCEEEECCCCC--------CHHHHHHHHH
T ss_conf             99999997497675577799966546875358999999999998689---997897178746--------9799999997


Q ss_pred             CCCCCEEE
Q ss_conf             79984149
Q gi|254780664|r  104 HELESIDL  111 (536)
Q Consensus       104 ~~i~~IDl  111 (536)
                      .|+..|+-
T Consensus        97 ~Gv~~i~~  104 (392)
T PRK13371         97 MGVKFIPV  104 (392)
T ss_pred             CCCEEEEC
T ss_conf             79999624


No 214
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=26.32  E-value=31  Score=14.99  Aligned_cols=29  Identities=38%  Similarity=0.630  Sum_probs=24.4

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf             23343469998740156313530899989
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~  164 (536)
                      .|||+..++-++..|+.=..++.|-..|.
T Consensus       101 ~dIG~~~l~ha~~Rn~dit~iv~DNevYg  129 (294)
T COG1013         101 YDIGGNHLIHALRRNHDITYIVVDNEVYG  129 (294)
T ss_pred             HHCCHHHHHHHHHCCCCEEEEEECCEECC
T ss_conf             54101677899970798599997770045


No 215
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=26.31  E-value=45  Score=13.86  Aligned_cols=29  Identities=41%  Similarity=0.540  Sum_probs=22.9

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf             23343469998740156313530899989
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~  164 (536)
                      -+|||--+|-|+-.|..-+.++.|-.-|.
T Consensus        99 ~~IGgnH~iHA~rRN~dit~iv~nN~iYG  127 (280)
T PRK11867         99 LAIGGNHFIHALRRNIDITIILFNNQIYG  127 (280)
T ss_pred             HHCHHHHHHHHHHHCCCCEEEEECCEEEC
T ss_conf             20238889999980898189998882010


No 216
>TIGR00520 asnASE_II L-asparaginases, type II; InterPro: IPR004550   L-asparaginase catalyses the conversion of L-asparagine to L-aspartate. Two related families of asparaginase (L-asparagine amidohydrolase, 3.5.1.1 from EC) are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This family describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activities , . All members are homotetrameric. ; GO: 0004067 asparaginase activity, 0006528 asparagine metabolic process.
Probab=26.30  E-value=25  Score=15.70  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=8.7

Q ss_pred             EECCCCHHHHHCCCC
Q ss_conf             020321022310123
Q gi|254780664|r  380 VLKTVSGGILVQTRD  394 (536)
Q Consensus       380 ~~rsi~GG~LvQ~~D  394 (536)
                      .||+..-|+|=.=.|
T Consensus       197 TF~~~n~G~lG~~~n  211 (360)
T TIGR00520       197 TFKSENQGYLGYIHN  211 (360)
T ss_pred             CCCCCCCCCEEEEEC
T ss_conf             121025541046762


No 217
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=26.21  E-value=45  Score=13.85  Aligned_cols=145  Identities=18%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHHHHHEECC-CCHH-HHHHHHCCCC--CEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCC
Q ss_conf             421457878865431111268-7989-9988512455--31563167667776664020321022310123345310001
Q gi|254780664|r  328 VDQEVAKEVIKVFTEAIIAPT-LSEE-AADVLAKKPS--MRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKELT  403 (536)
Q Consensus       328 vd~~~A~~I~~~F~EvIiAP~-f~~e-AleiL~~KKn--lRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~~~~~~~~~  403 (536)
                      |-..||+.+.+..+.+.+-|. ++.+ -++.|..-.+  -|++......        -|.+....|.+.--..   .++.
T Consensus        85 VG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~--------~r~~l~~~L~~~G~~v---~~~~  153 (248)
T COG1587          85 VGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNG--------GREVLEEKLEERGAEV---REVE  153 (248)
T ss_pred             ECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC--------CCHHHHHHHHHCCCEE---EEEE
T ss_conf             8899999999829987758988777999999874256787599973777--------7389999999769779---9997


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             24677786889888999999860056677999968938997296888899999999998764200122223487099973
Q gi|254780664|r  404 VVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASE  483 (536)
Q Consensus       404 vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSD  483 (536)
                      +=+ ..|.......+   +...+.-+-.+|++.--              -+++.-..-+......     .+..+..+| 
T Consensus       154 ~Y~-~~~~~~~~~~~---~~~~~~~~~d~v~ftS~--------------~~v~~~~~~~~~~~~~-----~~~~~~v~~-  209 (248)
T COG1587         154 VYR-TEPPPLDEATL---IELLKLGEVDAVVFTSS--------------SAVRALLALAPESGIE-----FLERKRVAS-  209 (248)
T ss_pred             EEE-EECCCCCHHHH---HHHHHCCCCCEEEECCH--------------HHHHHHHHHCCCCCCH-----HHCCCEEEE-
T ss_conf             775-30687557789---88851178559998799--------------9999999863522201-----212857999-


Q ss_pred             CCCCCCCHHHHHHHCCCCEEEECCCCC
Q ss_conf             668685558999971995999389877
Q gi|254780664|r  484 AFYPFPDGIVEAIKAGVTAVIQPGGSV  510 (536)
Q Consensus       484 AFFPF~D~ie~aa~~Gi~aIiqPGGSi  510 (536)
                         .-|..-+.+.+.|++.++||--+.
T Consensus       210 ---IG~~Ta~~l~~~G~~~~~~~~~~~  233 (248)
T COG1587         210 ---IGPRTAETLKELGITVDIAAEKPT  233 (248)
T ss_pred             ---ECHHHHHHHHHHCCCCEECCCCCC
T ss_conf             ---888999999982996233256677


No 218
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187   This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=26.13  E-value=44  Score=13.87  Aligned_cols=38  Identities=11%  Similarity=0.037  Sum_probs=12.9

Q ss_pred             HCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             00566779999689389972968888999999999987
Q gi|254780664|r  426 KHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAH  463 (536)
Q Consensus       426 K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~  463 (536)
                      |+.|---|.=+...--+-=|.-.+.=.+--+-+.+|+-
T Consensus       153 K~~~GE~Ig~~~EeGy~~RG~R~~~f~ed~kp~s~R~V  190 (433)
T TIGR01918       153 KLAKGEEIGSPDEEGYFERGVRVNAFREDRKPGSERAV  190 (433)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHH
T ss_conf             86435655886546722268210120013762578999


No 219
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=26.12  E-value=45  Score=13.84  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHC---CCEEEEEHHH--------HHHHHHCCCCE
Q ss_conf             69999999987---9999994276--------89999889951
Q gi|254780664|r   29 VVEFASRLLSR---GIKIISTGGT--------CQLLEEEGIPV   60 (536)
Q Consensus        29 l~~la~~L~~~---g~~iisTgGT--------a~~l~~~gi~v   60 (536)
                      +-++.+.|.+.   .+.++.||--        .+.+...|+..
T Consensus        16 lapli~~l~~~~~~~~~li~TGqH~~~~~g~t~~~i~~d~~~~   58 (365)
T TIGR03568        16 LRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDI   58 (365)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCHHHCCHHHHHHHCCCCC
T ss_conf             9999999972899888999907778411070899999757987


No 220
>PTZ00298 mevalonate kinase; Provisional
Probab=26.08  E-value=25  Score=15.71  Aligned_cols=27  Identities=30%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             961568656545201689999998533213200455542754
Q gi|254780664|r  287 IVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREV  328 (536)
Q Consensus       287 IvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v  328 (536)
                      -+-|.+|||+   ++            -+|+|||.|.|.+.-
T Consensus       145 ~~~hG~pSGi---D~------------~~s~~Gg~i~f~~~~  171 (328)
T PTZ00298        145 GGYHGTPSGA---DN------------TAATYGGLISYRRVN  171 (328)
T ss_pred             HHHCCCCCHH---HH------------HHHHCCCEEEEEECC
T ss_conf             9855899727---69------------999459879998548


No 221
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=26.00  E-value=45  Score=13.82  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=25.9

Q ss_pred             CCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHH
Q ss_conf             77613698998754568699999999879999994276
Q gi|254780664|r   12 GEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGT   49 (536)
Q Consensus        12 ~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGT   49 (536)
                      .+++=|+|||.=.-+-==..+|+.|.+.|+.++-++-+
T Consensus         4 ~~l~gKvalITGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (260)
T PRK12823          4 QRFAGKVAVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             88799989994886789999999999879999999694


No 222
>COG1483 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=25.99  E-value=45  Score=13.82  Aligned_cols=114  Identities=17%  Similarity=0.103  Sum_probs=73.1

Q ss_pred             ECCCCHHHHHHHHHHCCCEEEE--EHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf             5456869999999987999999--42768999988995179465348816519855323715553553308898999999
Q gi|254780664|r   24 HNKTGVVEFASRLLSRGIKIIS--TGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFM  101 (536)
Q Consensus        24 ~dKtgl~~la~~L~~~g~~iis--TgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l  101 (536)
                      .|+.+|.++.-.+..++..++-  -+||      ++-|.+++.         +| |||+-+.|-=-+.    .-....+-
T Consensus        98 ~d~e~i~el~e~~~~l~~~~v~v~~~~~------~~~P~~p~~---------~~-Vkt~wg~ia~~lg----~y~~v~~~  157 (774)
T COG1483          98 EDLEPIEELVERIKNLSVPIVVVYGKGT------APQPRQPLE---------GG-VKTEWGYIAYSLG----EYEIVEDV  157 (774)
T ss_pred             HCHHHHHHHHHHHHHCCCCEEEEECCCC------CCCCCCCCC---------CC-CCCCHHHHHHHCC----CCCHHHHH
T ss_conf             0302158899999707886699977887------899987601---------66-5420899999724----77401103


Q ss_pred             HHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCC-----------------CHHHHHHHHCCCCCCEEEECH
Q ss_conf             97799841499994888899731765311232002334-----------------346999874015631353089
Q gi|254780664|r  102 QDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIG-----------------GPSMIRAAAKNHDYVTILTNP  160 (536)
Q Consensus       102 ~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIG-----------------GpsmiRAAAKN~~~V~Vi~dp  160 (536)
                      .+.-..+.+=+.++|--+++..   ..++++.+.||=+                 =.+|+++|.|+-+.+.|.+-|
T Consensus       158 de~~t~~~~~~~~~ll~~~~v~---~lidei~deid~~~~~~~e~~r~y~~~~dn~La~v~sa~~~s~~~~v~~il  230 (774)
T COG1483         158 DENLTAPDPELLDELLDLEEVL---ALIDEIGDEIDTLIRSAFEEDRRYAGNADNPLARVLSALKGSKDEMVAIIL  230 (774)
T ss_pred             HHHHCCCCCCHHHHHCCHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             4653378842001430337778---889888888877513000001123321341899999874258630467775


No 223
>pfam11564 BpuJI_N Restriction endonuclease BpuJI - N terminal. BpuJI is a restriction endonuclease which recognizes the asymmetric sequence 5'-CCCGT and cuts at multiple sites in the surrounding area of the target sequence. This family of proteins is the N terminal domain of BpuJI which has DNA recognition functions. The recognition domain has two subdomains D1 and D2. The recognition of the target sequence occurs through major groove contacts of amino acids on the helix-turn-helix region and the N-terminal arm.
Probab=25.94  E-value=42  Score=14.03  Aligned_cols=19  Identities=11%  Similarity=0.139  Sum_probs=12.3

Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q ss_conf             6777868898889999998
Q gi|254780664|r  406 TKRSPTDQELRDMKFAFKV  424 (536)
Q Consensus       406 T~~~pt~~e~~dL~FA~kv  424 (536)
                      .+.+.|++..+...-+|--
T Consensus       266 ~~~~tt~ed~k~f~~~Wf~  284 (294)
T pfam11564       266 GNASTSEDDKKNFFKAWFE  284 (294)
T ss_pred             HCCCCCHHHHHHHHHHHHH
T ss_conf             2254758889999999999


No 224
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=25.93  E-value=45  Score=13.81  Aligned_cols=18  Identities=17%  Similarity=0.108  Sum_probs=10.0

Q ss_pred             EECCCCCCHHHHHHHHHH
Q ss_conf             938987798899999987
Q gi|254780664|r  504 IQPGGSVRDSEAITVADQ  521 (536)
Q Consensus       504 iqPGGSirD~evI~aan~  521 (536)
                      +.|-=.|.|+|+-+..+.
T Consensus       391 ~~Ppl~it~~eid~~~~~  408 (413)
T cd00610         391 LLPPLIITEEEIDEGLDA  408 (413)
T ss_pred             EECCCCCCHHHHHHHHHH
T ss_conf             978836899999999999


No 225
>pfam05327 RRN3 RNA polymerase I specific transcription initiation factor RRN3. This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae.
Probab=25.88  E-value=25  Score=15.69  Aligned_cols=72  Identities=11%  Similarity=0.040  Sum_probs=43.8

Q ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHH--HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1123200233434699987401563135308999898--8987530234566678899999999987422899998753
Q gi|254780664|r  129 YYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPL--FLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLA  205 (536)
Q Consensus       129 ~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~--~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~  205 (536)
                      +..++..|=-+-..|.-.=+++|.+.   .+|.....  +-+-|.-..  -..+.|...=...+.+.-.-|..|..-+.
T Consensus       150 L~~il~lVP~s~~~L~~~L~~~FP~~---~~~~~~~~~Yv~NlL~l~~--Y~p~Lr~~IL~lIieklikiDVeiq~~~d  223 (550)
T pfam05327       150 LRYILRLVPSAPSFLLPILAKNFPHK---TKSKKVLVGYVRNLLRLTE--YCPELGFDILELIIERLLKLDVEIQNELD  223 (550)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999985898578999999859999---9956889999999999984--54878999999999999994347678500


No 226
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.83  E-value=45  Score=13.80  Aligned_cols=58  Identities=16%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCC
Q ss_conf             145787886543111126879899988512455315631676677766640203210223101
Q gi|254780664|r  330 QEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQT  392 (536)
Q Consensus       330 ~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~  392 (536)
                      ..+|+.+.+.=+|+||++.+-+.|++.|+.+ .+++......    .-.--++.+..|-|.+.
T Consensus        55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~-GIkv~~~~~~----~V~e~i~~~~~g~l~~~  112 (121)
T COG1433          55 IRIAELLVDEGVDVVIASNIGPNAYNALKAA-GIKVYVAPGG----TVEEAIKAFLEGELEEA  112 (121)
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHHHHC-CCEEEECCCC----CHHHHHHHHHCCCCCCC
T ss_conf             7799999976998999776697799999974-9579965998----99999999861876556


No 227
>KOG1203 consensus
Probab=25.82  E-value=19  Score=16.53  Aligned_cols=16  Identities=19%  Similarity=0.075  Sum_probs=8.3

Q ss_pred             HHHHHHCCCCCCEEEE
Q ss_conf             9998740156313530
Q gi|254780664|r  143 MIRAAAKNHDYVTILT  158 (536)
Q Consensus       143 miRAAAKN~~~V~Vi~  158 (536)
                      +.-|..||+..|..+.
T Consensus       188 ~~~aGvk~~vlv~si~  203 (411)
T KOG1203         188 CKKAGVKRVVLVGSIG  203 (411)
T ss_pred             HHHHCCCEEEEEEEEC
T ss_conf             9983874599997634


No 228
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=25.78  E-value=43  Score=13.98  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.8

Q ss_pred             ECCCCCCHHHHHHHHHHHHHH
Q ss_conf             729688889999999999876
Q gi|254780664|r  444 IGSGQTSRVDSTRFAAIKAHN  464 (536)
Q Consensus       444 iGaGQ~sRVda~~iA~~KA~~  464 (536)
                      -|.|.+...+|+++|+.||-.
T Consensus        66 ~GGG~sgQA~AirlaIaRAL~   86 (132)
T PRK00474         66 SGGGIMGQADAVRTAIARGLV   86 (132)
T ss_pred             ECCCHHHHHHHHHHHHHHHHH
T ss_conf             778725999999999999999


No 229
>pfam01912 eIF-6 eIF-6 family. This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues.
Probab=25.59  E-value=46  Score=13.77  Aligned_cols=63  Identities=22%  Similarity=0.406  Sum_probs=41.6

Q ss_pred             CCCCCCCCCCHHHH----HHHHHH------HHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCC
Q ss_conf             68656545201689----999998------53321320045554275421457878865431111268798999885124
Q gi|254780664|r  291 MNPCGVATADTLVE----AYRRAL------SCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK  360 (536)
Q Consensus       291 ~NPCGvA~~~~~~~----Ay~~A~------~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~K  360 (536)
                      .|-=|..+.....+    ..++.+      --+.++|.|-+|++|...              .++-|++++|+.++++.-
T Consensus        61 gN~nGllvp~~~~d~El~~L~~~~~v~V~~l~~~~~AlGN~Il~ND~~--------------Alv~p~l~~e~~e~I~dv  126 (198)
T pfam01912        61 GNSNGLLVPSTATDEELDHLKESLDVNVERLEEKLTALGNVILANDKG--------------ALVHPDLSRETEEIIADV  126 (198)
T ss_pred             ECCCEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCC--------------EEECCCCCHHHHHHHHHH
T ss_conf             258827818978999999877427827999688556510489974754--------------596577998999999886


Q ss_pred             CCCEEEE
Q ss_conf             5531563
Q gi|254780664|r  361 PSMRFLK  367 (536)
Q Consensus       361 KnlRil~  367 (536)
                      =+..+.+
T Consensus       127 LgVev~~  133 (198)
T pfam01912       127 LGVEVFR  133 (198)
T ss_pred             HCCEEEE
T ss_conf             3963999


No 230
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=25.57  E-value=46  Score=13.77  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=15.7

Q ss_pred             HHHHHHHHHEECCCCHHHHHHHHC---CCCCEEEEC
Q ss_conf             886543111126879899988512---455315631
Q gi|254780664|r  336 VIKVFTEAIIAPTLSEEAADVLAK---KPSMRFLKT  368 (536)
Q Consensus       336 I~~~F~EvIiAP~f~~eAleiL~~---KKnlRil~~  368 (536)
                      ..+.=++.+|-||.-.|-.+-+.+   +.++.++.+
T Consensus       110 ~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~l  145 (258)
T pfam00290       110 AAEAGVDGLIIPDLPPEEADPLREAAEKHGIDLIFL  145 (258)
T ss_pred             HHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             997599778707999889999999998458435888


No 231
>PRK07814 short chain dehydrogenase; Provisional
Probab=25.52  E-value=46  Score=13.76  Aligned_cols=87  Identities=16%  Similarity=0.182  Sum_probs=46.3

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             76136989987545686999999998799999942768999988995179465348816519855323715553553308
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r   92 (536)
                      +++=|.|||.=.-+-==...|+.|.+.|.+++-++-..+.|.+.      .+++..    .++++..+        .++-
T Consensus         7 ~L~gKvalITGgs~GIG~aia~~la~~Ga~V~i~~~~~~~l~~~------~~~i~~----~g~~~~~~--------~~Dv   68 (263)
T PRK07814          7 RLDGQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV------AEQIRA----AGRRAHVV--------AADL   68 (263)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHHHHH----CCCEEEEE--------ECCC
T ss_conf             89999899958966899999999998799899996989999999------999985----29928999--------8158


Q ss_pred             CCHHHHHHHHH---CCCCCEEEEEEECC
Q ss_conf             89899999997---79984149999488
Q gi|254780664|r   93 DNPAHMKFMQD---HELESIDLVVVNLY  117 (536)
Q Consensus        93 ~~~~~~~~l~~---~~i~~IDlVvvNLY  117 (536)
                      .++++.+.+-+   ..+..||++|.|--
T Consensus        69 ~~~~~v~~~v~~~~~~~G~iDiLVnNAg   96 (263)
T PRK07814         69 AHPEATAGLAGQAVEAFGRLDIVVNNVG   96 (263)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             9999999999999998299889998986


No 232
>KOG1753 consensus
Probab=25.52  E-value=39  Score=14.32  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=16.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             99729688889999999999876
Q gi|254780664|r  442 VGIGSGQTSRVDSTRFAAIKAHN  464 (536)
Q Consensus       442 iGiGaGQ~sRVda~~iA~~KA~~  464 (536)
                      ---|.|.+|||-++++|+.||--
T Consensus        70 ~~~ggghvsqiyairqa~~kalv   92 (145)
T KOG1753          70 RVKGGGHVSQIYAIRQAIAKALV   92 (145)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH
T ss_conf             98358508889999987367799


No 233
>pfam04963 Sigma54_CBD Sigma-54 factor, core binding domain. This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme. The centre of this domain contains a very weak similarity to a helix-turn-helix motif which may represent the other DNA binding domain.
Probab=25.28  E-value=46  Score=13.73  Aligned_cols=101  Identities=19%  Similarity=0.316  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             21200116776424556727999615686565452016899999985332132004555427542145787886543111
Q gi|254780664|r  265 NDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAI  344 (536)
Q Consensus       265 lD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvI  344 (536)
                      .++..+++.++.|              -|+||+. .|+.|.+.--+.-.+             .....|..|...++|.+
T Consensus        67 ~~ie~~l~~iQ~l--------------eP~GIgA-rnL~EcL~lQL~~~~-------------~~~~~a~~ii~~~le~l  118 (195)
T pfam04963        67 DEVEAVLAVLQQF--------------DPAGVGA-RDLSECLLLQLRQLD-------------RWLDPAMEALVDHLELL  118 (195)
T ss_pred             HHHHHHHHHHHCC--------------CCCCCCC-CCHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHH
T ss_conf             9999999999748--------------9982350-889999999986528-------------65689999999889998


Q ss_pred             EECCCCH-------------HHHHHHHC---CCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCC
Q ss_conf             1268798-------------99988512---455315631676677766640203210223101233
Q gi|254780664|r  345 IAPTLSE-------------EAADVLAK---KPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDN  395 (536)
Q Consensus       345 iAP~f~~-------------eAleiL~~---KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D~  395 (536)
                      ..-.|..             +|++++++   ||...+-.  ....+-.+.+-++...|+|.++-.+.
T Consensus       119 ~~~~~~~i~k~l~~s~~~i~~a~~~I~~LnPkPg~~f~~--~~~~yI~PDi~V~~~~~~~~v~lN~~  183 (195)
T pfam04963       119 ARRDFATLKRICGVDEEDLREMIEEIRSLNPKPGSAFES--GEAEYVVPDVIVRKGNGGWLVELNPD  183 (195)
T ss_pred             HCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCEEEEEECCEEEEEECCC
T ss_conf             526899999996919999999999999679996111378--98887589679998599899998778


No 234
>PRK13123 consensus
Probab=25.24  E-value=47  Score=13.73  Aligned_cols=17  Identities=29%  Similarity=0.534  Sum_probs=7.8

Q ss_pred             HHHHEECCCCHHHHHHH
Q ss_conf             31111268798999885
Q gi|254780664|r  341 TEAIIAPTLSEEAADVL  357 (536)
Q Consensus       341 ~EvIiAP~f~~eAleiL  357 (536)
                      ++.+|-||.-.|.-+-+
T Consensus       118 vdGvIipDLP~eE~~~~  134 (256)
T PRK13123        118 VKGLIIPDLPYEHQDFI  134 (256)
T ss_pred             CCEEECCCCCHHHHHHH
T ss_conf             97897379996789999


No 235
>PRK13140 consensus
Probab=25.08  E-value=47  Score=13.71  Aligned_cols=101  Identities=13%  Similarity=0.207  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHHCCCCCCCEEEEECCCCCC--CCCCCCHHHHHHHHHHHHCC--CCCCC-----------EEEEE---CCC
Q ss_conf             12001167764245567279996156865--65452016899999985332--13200-----------45554---275
Q gi|254780664|r  266 DLDAAFELVSEFRSQDCAACVIVKHMNPC--GVATADTLVEAYRRALSCDP--ISAFG-----------GIIAF---NRE  327 (536)
Q Consensus       266 D~daA~~lv~ef~~~~~Pa~vIvKH~NPC--GvA~~~~~~~Ay~~A~~~DP--~SAFG-----------GIIa~---N~~  327 (536)
                      |.+..++++..+.+.   .|=++-=.-|-  -+|-|..+-.|..+|++..-  ...|.           -+|.+   |--
T Consensus        26 ~~~~s~~~~~~l~~~---GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlM~Y~N~i  102 (257)
T PRK13140         26 TLEDTVSIIKDLEKH---GVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRKEVQIPLILMGYLNPI  102 (257)
T ss_pred             CHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHH
T ss_conf             879999999999975---99999978988987765899999999999869989999999999743689888999055999


Q ss_pred             CC---HHHHHHHHHHHHHHHEECCCCHHH-HHHH---HCCCCCEEEECC
Q ss_conf             42---145787886543111126879899-9885---124553156316
Q gi|254780664|r  328 VD---QEVAKEVIKVFTEAIIAPTLSEEA-ADVL---AKKPSMRFLKTS  369 (536)
Q Consensus       328 vd---~~~A~~I~~~F~EvIiAP~f~~eA-leiL---~~KKnlRil~~~  369 (536)
                      ..   ++..+...+.=++.+|-||.-.|- .+.+   .++.++.++.+-
T Consensus       103 ~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~~i~~I~lv  151 (257)
T PRK13140        103 MQYGFEKFCKKCAETGIDGVIIPDLPFDDYQEHYKEIFEKYGLKNIMLI  151 (257)
T ss_pred             HHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8517999999999849986983599856758999999998699779986


No 236
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=25.00  E-value=47  Score=13.70  Aligned_cols=40  Identities=15%  Similarity=0.207  Sum_probs=20.1

Q ss_pred             ECCCCCHHHHHHHH-HHHHHHHEECCCCHHHHHHHHCCCCC
Q ss_conf             42754214578788-65431111268798999885124553
Q gi|254780664|r  324 FNREVDQEVAKEVI-KVFTEAIIAPTLSEEAADVLAKKPSM  363 (536)
Q Consensus       324 ~N~~vd~~~A~~I~-~~F~EvIiAP~f~~eAleiL~~KKnl  363 (536)
                      ++...+.+.++... +.=+=-+-||.|.|....+..-+|.+
T Consensus       130 ~~~~~s~~~~~~~~~~~g~~fl~Ap~~~pa~~~~~~~R~~l  170 (339)
T PRK00188        130 INLDLTPEQVARCLDEVGIGFLFAPLYHPAMKHVAPVRKEL  170 (339)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEECHHHCHHHHHHHHHHHCC
T ss_conf             76689999999999980956962143498889888775404


No 237
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=24.93  E-value=36  Score=14.57  Aligned_cols=18  Identities=44%  Similarity=0.689  Sum_probs=10.9

Q ss_pred             CCEEEEECCCCCHHHHHHHHH
Q ss_conf             004555427542145787886
Q gi|254780664|r  318 FGGIIAFNREVDQEVAKEVIK  338 (536)
Q Consensus       318 FGGIIa~N~~vd~~~A~~I~~  338 (536)
                      =||+|.+|   |++.++.|.+
T Consensus       240 rGGiIl~~---~~el~~kId~  257 (422)
T PRK13034        240 RGGMILTN---DEEIAKKINS  257 (422)
T ss_pred             CCCEEECC---HHHHHHHHHC
T ss_conf             84357526---6999998643


No 238
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=24.89  E-value=45  Score=13.83  Aligned_cols=58  Identities=31%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             CCCHHHHHHHHCC---CC------CCEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3434699987401---56------3135308999898898753023456667889999999998742289999
Q gi|254780664|r  138 IGGPSMIRAAAKN---HD------YVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAIC  201 (536)
Q Consensus       138 IGGpsmiRAAAKN---~~------~V~Vi~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia  201 (536)
                      .||+.|++|+.+.   +.      -|+++|+.++=+  +.++. .++. -.+.=.++|..|+.  +.-|..|+
T Consensus        89 ~~G~~~l~a~~~~~~~~~~~~kll~Vt~LTS~~~~~--l~~~~-~~~~-~~~~v~~~a~~a~~--~g~dGiVc  155 (231)
T PRK00230         89 SGGARMMAAAREGLEPGGSRPLLIAVTVLTSMDEED--LAELG-INLS-LEEQVLRLAKLAQE--AGLDGVVC  155 (231)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH--HHHCC-CCCC-HHHHHHHHHHHHHH--HCCCEEEC
T ss_conf             785999999999887148987599999623689889--98667-5789-99999999999999--69984863


No 239
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=24.73  E-value=42  Score=14.06  Aligned_cols=115  Identities=16%  Similarity=0.058  Sum_probs=67.9

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             76136989987545686999999998799999942768999988995179465348816519855323715553553308
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR   92 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r   92 (536)
                      ++.|=--=..|||.+.|-..-..+.-        .=-.++|+..|.+|+-|..+|.-..=+--|-+..  .+.-.-|++|
T Consensus         9 ~V~mY~CGPTVYd~~HiGhaRt~v~f--------D~l~R~L~~~gy~V~~v~NiTDVDDKii~~A~~~--g~~~~ela~~   78 (384)
T PRK12418          9 TATMYVCGITPYDATHLGHAATYLAF--------DLVQRVWLDAGHDVHYVQNVTDVDDPLLERAARD--GVDWRDLAAR   78 (384)
T ss_pred             EEEEEECCCCCCCCCCCCCCHHHHHH--------HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH--CCCHHHHHHH
T ss_conf             68999668868888542335168999--------9999999980996499981050638999999985--9399999999


Q ss_pred             CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCC
Q ss_conf             89899999997799841499994888899731765311232002334346999874015631
Q gi|254780664|r   93 DNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYV  154 (536)
Q Consensus        93 ~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V  154 (536)
                      -...-.++|+.+||.+-|.     ||     .-+...+++|+.|.       +--.|.|.++
T Consensus        79 ~~~~f~~d~~~Lnv~~p~~-----~p-----raTe~I~~ii~~I~-------~Li~~G~AY~  123 (384)
T PRK12418         79 EIALFREDMAALRVLPPRD-----YV-----GAVESIPEVVELVE-------KLLASGAAYV  123 (384)
T ss_pred             HHHHHHHHHHHCCCCCCCE-----EC-----CCCCCHHHHHHHHH-------HHHHCCCEEE
T ss_conf             9999999999829999950-----03-----21137999999999-------9996795577


No 240
>pfam01045 consensus
Probab=24.70  E-value=25  Score=15.66  Aligned_cols=15  Identities=13%  Similarity=0.310  Sum_probs=5.9

Q ss_pred             EECHHHHHHHHHHHH
Q ss_conf             308999898898753
Q gi|254780664|r  157 LTNPQDYPLFLAEMD  171 (536)
Q Consensus       157 i~dp~dY~~~~~el~  171 (536)
                      +-|..|+++-++.|+
T Consensus       112 lndstqwddwv~kme  126 (411)
T pfam01045       112 LNDSTQWDDRVDKME  126 (411)
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             465330888999998


No 241
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=24.54  E-value=48  Score=13.64  Aligned_cols=116  Identities=22%  Similarity=0.314  Sum_probs=63.3

Q ss_pred             CEEEEEEEEECC-CCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH
Q ss_conf             136989987545-6869999999987--99999942768999988-9951794653488165198553237155535533
Q gi|254780664|r   15 AVKTALISVHNK-TGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS   90 (536)
Q Consensus        15 ~ikrALiSV~dK-tgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~   90 (536)
                      ..+-|||.--.| ..++.|++.-.+.  .++|++||-|...++++ |++|..+-+   =|  |||               
T Consensus         4 ~k~IALIAHD~kK~~lv~f~~~~~~~L~~h~L~ATGTTG~~i~~atgL~v~~~~S---GP--mGG---------------   63 (142)
T COG1803           4 RKHIALIAHDHKKDDLVNFVQAHKELLSRHDLYATGTTGGLIQEATGLNVHRLKS---GP--MGG---------------   63 (142)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCCCEEEEEC---CC--CCC---------------
T ss_conf             5158888431108899999999899753156898447127889875871577404---78--884---------------


Q ss_pred             CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
Q ss_conf             08898999999977998414999948888997317653112320023343469998740156313530899989889875
Q gi|254780664|r   91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEM  170 (536)
Q Consensus        91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el  170 (536)
                          ++.+-.+  .-=..||+++-=--|...   .  +++     -|+  -+|+|.|--  .++.+-++-+--+-++.-+
T Consensus        64 ----DQQiGa~--Iaeg~id~lIFf~DPLta---q--PHd-----pDV--kAL~Rl~~V--~nIP~A~N~aTAe~li~~~  123 (142)
T COG1803          64 ----DQQIGAL--IAEGKIDVLIFFWDPLTA---Q--PHD-----PDV--KALLRLATV--YNIPVATNRATAEFLIKSL  123 (142)
T ss_pred             ----CHHHHHH--HHCCCCEEEEEEECCCCC---C--CCC-----CCH--HHHHHHHHH--HCCCCHHHHHHHHHHHHCC
T ss_conf             ----0788788--762862299997067878---9--998-----579--999999886--1561131175799998352


No 242
>PRK13120 consensus
Probab=24.50  E-value=48  Score=13.63  Aligned_cols=142  Identities=20%  Similarity=0.227  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHEECCCCHHH-HHHHH--CCCCCEEEECCCCCCCCCCC-CEECCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             787886543111126879899-98851--24553156316766777666-402032102231012334531000124677
Q gi|254780664|r  333 AKEVIKVFTEAIIAPTLSEEA-ADVLA--KKPSMRFLKTSSLLDFHGEE-IVLKTVSGGILVQTRDNVVDNKELTVVTKR  408 (536)
Q Consensus       333 A~~I~~~F~EvIiAP~f~~eA-leiL~--~KKnlRil~~~~~~~~~~~~-~~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~  408 (536)
                      ++...+.=++.+|-||--.|- -++..  +|.++-++.+-..... ... ..+-....||+..-.        ..=||..
T Consensus       119 ~~~~~~aGvdGlIIpDLP~EE~~~~~~~~~~~gi~~I~LiaPtT~-~eRi~~I~~~s~GFvY~VS--------~~GVTG~  189 (285)
T PRK13120        119 AQAAQAAGVDGVLVVDYPPEEVDEFAAMLAEAGVAPIFLLAPTST-EARIEAIGRVARGYVYYVS--------LKGVTGA  189 (285)
T ss_pred             HHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHHCCCCEEEEE--------CCCCCCC
T ss_conf             999998398779647999799999999999669965899579998-9999999950898189986--------5654688


Q ss_pred             -CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             -7868898889999998600566779999689389972968888999999999987642001222234870999736686
Q gi|254780664|r  409 -SPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYP  487 (536)
Q Consensus       409 -~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFP  487 (536)
                       ....+++.+++  -++=+++ +         .-|.+|=|=-++-++-+++-              .+.|+|..|-    
T Consensus       190 ~~~~~~~l~~~i--~~ik~~t-~---------~Pv~vGFGIs~~e~v~~~~~--------------~ADGvIVGSA----  239 (285)
T PRK13120        190 GSLDTDDVARKL--ALIRRHV-H---------IPVGVGFGIRDAASAQRIAA--------------HADAVVIGSK----  239 (285)
T ss_pred             CCCCHHHHHHHH--HHHHHCC-C---------CCEEEEECCCCHHHHHHHHC--------------CCCEEEECHH----
T ss_conf             755668899999--9999726-9---------97599962598999999970--------------2999998789----


Q ss_pred             CCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf             855589999719959993898779889999998
Q gi|254780664|r  488 FPDGIVEAIKAGVTAVIQPGGSVRDSEAITVAD  520 (536)
Q Consensus       488 F~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan  520 (536)
                         =|+...++|=    |.+.+.+.+.-..++-
T Consensus       240 ---iVk~Iee~~~----~~~~~~~~~~~~~~~~  265 (285)
T PRK13120        240 ---LIETMEQAGA----QAGADQKNEAAIAAAQ  265 (285)
T ss_pred             ---HHHHHHHCCC----CCCCCCCHHHHHHHHH
T ss_conf             ---9999997075----4565556889999999


No 243
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=24.43  E-value=48  Score=13.62  Aligned_cols=26  Identities=8%  Similarity=0.029  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCEEE
Q ss_conf             89999998600566779999689389
Q gi|254780664|r  417 DMKFAFKVVKHVKSNAVVYAKDGRTV  442 (536)
Q Consensus       417 dL~FA~kv~K~vkSNAIv~ak~~~ti  442 (536)
                      ..+|+.--.+..|--+|..+-+.-+-
T Consensus       184 aaL~~la~~~g~kA~svl~V~dn~~~  209 (233)
T PRK13374        184 AGLYGLAAYLGAEALAILTVSDHIIT  209 (233)
T ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf             99999999849857899999600476


No 244
>pfam01244 Peptidase_M19 Membrane dipeptidase (Peptidase family M19).
Probab=24.27  E-value=48  Score=13.60  Aligned_cols=187  Identities=17%  Similarity=0.215  Sum_probs=89.3

Q ss_pred             HHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCC
Q ss_conf             99999997799841499994888899731765311232002334346999874015631353089998988987530234
Q gi|254780664|r   96 AHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNG  175 (536)
Q Consensus        96 ~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~~g  175 (536)
                      .|...|++   ..+++++..+|-=+ ........+.+.|+||.    +-|-.++|-..+..+.+.+|.....++=+.. -
T Consensus        35 vdlprlr~---Ggv~~q~fai~v~~-~~~~~~~~~~al~~id~----~~~~~~~~~~~~~~~~s~~di~~a~~~gk~a-~  105 (316)
T pfam01244        35 TDLERLRA---GGVGAQFFAIFVPC-DAQYEDAVQATLEQIDI----FRRLVRKNPEQLRLVRTADDIERAKKEGKIA-I  105 (316)
T ss_pred             CCHHHHHH---CCCCEEEEEEEECC-CCCCHHHHHHHHHHHHH----HHHHHHHCCCCEEEECCHHHHHHHHHCCCEE-E
T ss_conf             17999986---79987999999578-77750899999999999----9999996989689969999999999779989-9


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCC
Q ss_conf             56667889999999998742289999875331012113443210123333436788100650576047766821012105
Q gi|254780664|r  176 KIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQ  255 (536)
Q Consensus       176 ~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~  255 (536)
                      -++.|--.-+...--..-..|+.          +   -..+.+++.....+=.|..+         .....|+..+    
T Consensus       106 ~l~~Eg~~~l~~dl~~l~~~y~~----------G---vR~~~Lt~n~~N~~a~g~~~---------~~~~~GLt~~----  159 (316)
T pfam01244       106 LLGIEGAHALGDDLALLRTFYAL----------G---VRYLGLTWNCNNLFADGCLE---------RKRDGGLTRF----  159 (316)
T ss_pred             EEEEECHHHHHCCHHHHHHHHHC----------C---CEEEEEECCCCCCCCCCCCC---------CCCCCCCCHH----
T ss_conf             99520767764509999999961----------9---37998523788854036787---------9889998877----


Q ss_pred             CCC----C-CCCCCCCCC-----HHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             898----8-831222120-----011677642455672799961568656545-20168999999853321320045554
Q gi|254780664|r  256 GKP----L-SYNNINDLD-----AAFELVSEFRSQDCAACVIVKHMNPCGVAT-ADTLVEAYRRALSCDPISAFGGIIAF  324 (536)
Q Consensus       256 GKe----L-SYNNllD~d-----aA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~-~~~~~~Ay~~A~~~DP~SAFGGIIa~  324 (536)
                      ||+    | ...=++|+.     +.|..+ ++.+  .|  +|.-|+|+-.+.- ..|+.+.-.+|++.     -||+|.+
T Consensus       160 G~~~v~~mn~lGmivDlSH~s~~~~~d~~-~~s~--~P--viaSHSn~ral~~h~RNl~De~i~aia~-----~gGviGi  229 (316)
T pfam01244       160 GKEVVREMNRLGILIDLSHLSERTFWDVL-ELSK--AP--VVASHSNARALCDHPRNLTDEQLKAIAE-----SGGVIGV  229 (316)
T ss_pred             HHHHHHHHHHCCCEEECCCCCHHHHHHHH-HHCC--CC--EEEECCCHHHCCCCCCCCCHHHHHHHHH-----CCCEEEE
T ss_conf             99999999976967764879889999999-9709--99--8997878554058888888999999986-----4987999


Q ss_pred             CCC
Q ss_conf             275
Q gi|254780664|r  325 NRE  327 (536)
Q Consensus       325 N~~  327 (536)
                      |.-
T Consensus       230 ~~~  232 (316)
T pfam01244       230 NFY  232 (316)
T ss_pred             EEC
T ss_conf             600


No 245
>PRK03675 consensus
Probab=23.94  E-value=40  Score=14.16  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=11.7

Q ss_pred             EEEECCCCCCCCHHHHHHHCCCCEEE
Q ss_conf             99973668685558999971995999
Q gi|254780664|r  479 VIASEAFYPFPDGIVEAIKAGVTAVI  504 (536)
Q Consensus       479 vlaSDAFFPF~D~ie~aa~~Gi~aIi  504 (536)
                      ++++-+-|. .+.++.+.++ |.-|+
T Consensus       234 ~~aTHglfs-~~A~~~l~~~-i~~iv  257 (279)
T PRK03675        234 VVATHGVFA-EGAIERVSKA-VDELA  257 (279)
T ss_pred             EEEECCCCC-CHHHHHHHHH-CCEEE
T ss_conf             999781068-0699999974-88999


No 246
>PRK06500 short chain dehydrogenase; Provisional
Probab=23.72  E-value=50  Score=13.53  Aligned_cols=44  Identities=27%  Similarity=0.283  Sum_probs=29.8

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHC
Q ss_conf             76136989987545686999999998799999942768999988
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEE   56 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~   56 (536)
                      +++=|+|||.=.-+-==...|+.|.+.|.+++-++-..+.|.+.
T Consensus         3 rl~gK~~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~   46 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFAAEGARVAITGRDAATLEAA   46 (249)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             98998899937687899999999998799999996998999999


No 247
>PRK13973 thymidylate kinase; Provisional
Probab=23.59  E-value=50  Score=13.51  Aligned_cols=100  Identities=15%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             HHHHCCCCEEEHHHHCCCC------H-HCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHC
Q ss_conf             9998899517946534881------6-51985532371555355330889899999997799841499994888899731
Q gi|254780664|r   52 LLEEEGIPVTSVFDITKFP------E-IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFC  124 (536)
Q Consensus        52 ~l~~~gi~v~~Vs~~Tgfp------E-il~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~  124 (536)
                      .|++.|++|.-..+-+|.|      + +|+|...-++|....= |+--++-+|..++-+-....=..|||+=|=+...+-
T Consensus        26 ~L~~~g~~v~~trePg~t~~~e~ir~~ll~~~~~~~~~~~e~l-LfaA~R~eh~~~~I~paL~~g~~VI~DRy~~Ss~AY  104 (216)
T PRK13973         26 RLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPAMEAL-LFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAY  104 (216)
T ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
T ss_conf             9997799579940989984089999998466657899899999-999999999999999999779989867862579999


Q ss_pred             CCC----CH--HHHHHCCCCCCHHHHHHHHCCCCCCEEEECHH
Q ss_conf             765----31--12320023343469998740156313530899
Q gi|254780664|r  125 RED----DY--YTMVENIDIGGPSMIRAAAKNHDYVTILTNPQ  161 (536)
Q Consensus       125 ~~~----~~--~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~  161 (536)
                      ++.    +.  -+.++.+-+|+|         .++++++-|-.
T Consensus       105 Qg~~~~~~~~~l~~l~~~~~~~~---------~PDlti~LDv~  138 (216)
T PRK13973        105 QGVTGNVDPALLAALERVAINGV---------MPDLTLILDIP  138 (216)
T ss_pred             HHHCCCCCHHHHHHHHHHHHCCC---------CCCEEEEECCC
T ss_conf             77427889899999999996799---------99989998188


No 248
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=23.52  E-value=40  Score=14.21  Aligned_cols=30  Identities=43%  Similarity=0.570  Sum_probs=23.8

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHHH
Q ss_conf             233434699987401563135308999898
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPL  165 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~  165 (536)
                      -|||++.|+.|+-.|..-+.++.|-.-|..
T Consensus        82 ~~iG~~~l~~A~~rn~~i~~iv~DN~~ygm  111 (193)
T cd03375          82 AAIGGNHFIHAARRNIDITVIVHNNQIYGL  111 (193)
T ss_pred             HHCCHHHHHHHHHHCCCEEEEEECCCCEEC
T ss_conf             645618899999809974999985840442


No 249
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown.  Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=23.50  E-value=50  Score=13.50  Aligned_cols=39  Identities=18%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHH--------HHHEECC-CCHHHHHHHHC
Q ss_conf             04555427542145787886543--------1111268-79899988512
Q gi|254780664|r  319 GGIIAFNREVDQEVAKEVIKVFT--------EAIIAPT-LSEEAADVLAK  359 (536)
Q Consensus       319 GGIIa~N~~vd~~~A~~I~~~F~--------EvIiAP~-f~~eAleiL~~  359 (536)
                      |..+-..|-++..+  .+.+.|=        =+-.||. +++.|..|..-
T Consensus       159 GSCVDnsri~~la~--~lA~~lG~vdi~dLP~~gsApe~~seKAvAIgt~  206 (258)
T cd00587         159 GNCVDNSHAANLAL--KLANMFGGYDRSDLPAVASAPGAYSQKAAAIATG  206 (258)
T ss_pred             CCCHHHHHHHHHHH--HHHHHHCCCCHHCCCCEEECHHHHHHHHHHHHHH
T ss_conf             53142789999999--9999846676200751031715565899999999


No 250
>KOG2474 consensus
Probab=23.47  E-value=50  Score=13.50  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             CCCCC-CCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCC-------CHHHHHHHHHHHHCCCCCCC
Q ss_conf             88312-221200116776424556727999615686565-452-------01689999998533213200
Q gi|254780664|r  259 LSYNN-INDLDAAFELVSEFRSQDCAACVIVKHMNPCGV-ATA-------DTLVEAYRRALSCDPISAFG  319 (536)
Q Consensus       259 LSYNN-llD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGv-A~~-------~~~~~Ay~~A~~~DP~SAFG  319 (536)
                      +++|+ -.++...|+-..+.      .-.+.+|+.|-|+ +++       .+.-|.|+-+|+.---+-||
T Consensus       230 P~~~~~~~~a~~sw~~i~l~------~~~~~~h~~P~g~~~I~va~~~alst~pE~Fe~~~ns~~a~Gf~  293 (406)
T KOG2474         230 PSGNDVEEAAASSWRRIHLL------TLSITVHNHPEGLIGIQVALGAALSTFPEGFESFYNSSLAIGFG  293 (406)
T ss_pred             CCCCCCCCCHHHHHHHHHHH------CCHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHH
T ss_conf             87776224313335777641------50220025854035778887766502718889885230000124


No 251
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=23.46  E-value=50  Score=13.49  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHCCCEEEEEHHHHHHHHHC
Q ss_conf             686999999998799999942768999988
Q gi|254780664|r   27 TGVVEFASRLLSRGIKIISTGGTCQLLEEE   56 (536)
Q Consensus        27 tgl~~la~~L~~~g~~iisTgGTa~~l~~~   56 (536)
                      |++.=|-+++...=+=++.|---+.+|+.+
T Consensus        26 t~i~WLhrki~DaFFLVvGsrTCahllQsA   55 (425)
T PRK02842         26 TSVVWLHRKIKDSFFLVVGTRTCAHLLQSA   55 (425)
T ss_pred             HHHHHHHHHCCCCEEEEEECCHHHHHHHHC
T ss_conf             347989986476549998450278787406


No 252
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=23.44  E-value=50  Score=13.49  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=9.9

Q ss_pred             HHHHHHCCCCEEEHHHHCCCC
Q ss_conf             899998899517946534881
Q gi|254780664|r   50 CQLLEEEGIPVTSVFDITKFP   70 (536)
Q Consensus        50 a~~l~~~gi~v~~Vs~~Tgfp   70 (536)
                      -+.|...||.++.|.|+|-.|
T Consensus        94 ir~l~~~Gl~I~~I~DvTpiP  114 (129)
T PRK09607         94 IRALARAGLRIGRIEDVTPIP  114 (129)
T ss_pred             HHHHHHCCCEEEEEEEECCCC
T ss_conf             999986897898988709899


No 253
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=23.44  E-value=22  Score=16.06  Aligned_cols=128  Identities=13%  Similarity=0.182  Sum_probs=67.3

Q ss_pred             HHHHHHHHHCCCCEEEHHH---H----CCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCH
Q ss_conf             2768999988995179465---3----48816519855323715553553308898999999977998414999948888
Q gi|254780664|r   47 GGTCQLLEEEGIPVTSVFD---I----TKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPF  119 (536)
Q Consensus        47 gGTa~~l~~~gi~v~~Vs~---~----TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF  119 (536)
                      ..|.+.|+++|+++....+   +    .++|++   ++.-+             ++.|+.+.-++|.-.+-+|=-++  .
T Consensus        15 ~~~~~ll~~~Gl~~~~~~~~R~~~~~~~~~~~i---~i~~~-------------r~~DIp~yV~~G~~DlGItG~D~--l   76 (226)
T PRK13583         15 EKTFAWFEKAGYTLVRPGSDREYRGRVEGLDDV---ELLFL-------------SASEIPRELGAGRVDLGVTGEDL--V   76 (226)
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCE---EEEEE-------------CHHHHHHHHHCCCCCEEEEEHHH--H
T ss_conf             999999998799853488862205540599985---89997-------------55568999976986566502255--5


Q ss_pred             HHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99731765311232002334346999874015631353089998988987530234566678899999999987422899
Q gi|254780664|r  120 EESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTA  199 (536)
Q Consensus       120 ~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~~  199 (536)
                      .|.-..-...-+.+....+|...|+-|+-++|.+|.-+.|..   ++..+++..+|.     |.+.|       +.|-..
T Consensus        77 ~E~~~~~~~~v~~~~~LgfG~c~LvvAvP~~w~dv~s~~dl~---~~~~~~~~~~~~-----~lrIA-------Tkyp~l  141 (226)
T PRK13583         77 REKLADWDKRVEIVARLGFGHADLVVAVPEIWIDVDTMADLD---DVAADFRARHGR-----RLRIA-------TKYWRL  141 (226)
T ss_pred             HHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCHHHHH---HHHHHHHHCCCC-----CEEEE-------ECCCHH
T ss_conf             422446145277632178561669999444013554400055---664554421454-----14764-------047326


Q ss_pred             HHHHHHHH
Q ss_conf             99875331
Q gi|254780664|r  200 ICRWLANA  207 (536)
Q Consensus       200 Ia~~l~~~  207 (536)
                      -.+||.+.
T Consensus       142 t~~~f~~~  149 (226)
T PRK13583        142 TQQFLSQK  149 (226)
T ss_pred             HHHHHHHC
T ss_conf             57889866


No 254
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=23.40  E-value=50  Score=13.49  Aligned_cols=15  Identities=33%  Similarity=0.425  Sum_probs=7.6

Q ss_pred             HHHHHHCCCCCEEEE
Q ss_conf             998851245531563
Q gi|254780664|r  353 AADVLAKKPSMRFLK  367 (536)
Q Consensus       353 AleiL~~KKnlRil~  367 (536)
                      ..++++.-+-=|+|.
T Consensus       188 ~~~~~~~iPl~rlll  202 (255)
T pfam01026       188 LREVVAEIPLDRLLV  202 (255)
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             999997499625998


No 255
>pfam09894 DUF2121 Uncharacterized protein conserved in archaea (DUF2121). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=23.37  E-value=41  Score=14.11  Aligned_cols=40  Identities=20%  Similarity=0.151  Sum_probs=32.6

Q ss_pred             HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCC
Q ss_conf             9999999987999999427689999889951794653488
Q gi|254780664|r   30 VEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKF   69 (536)
Q Consensus        30 ~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~Tgf   69 (536)
                      +||.+...++|++|.=|...-|.-+-.|+-|-+|+.++|+
T Consensus        47 eEL~kkA~E~~V~i~i~D~~~KV~~~~~vlvGEV~s~~g~   86 (194)
T pfam09894        47 EELKKKASEFGVKIYITDDREKVRKVGDVLVGEVTSIEGK   86 (194)
T ss_pred             HHHHHHHHHCCCEEEEECCHHHEEEECCEEEEEEEEECCC
T ss_conf             9999889875947999627245378589999988885066


No 256
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=23.31  E-value=41  Score=14.16  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=23.5

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf             23343469998740156313530899989
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~  164 (536)
                      -|||+-.++.|+..|..-..++.|-.-|.
T Consensus       100 ~~IG~~~l~ha~~Rn~~i~~I~~dN~~Yg  128 (237)
T cd02018         100 YDIGFGALSHSLFRGEDITVIVLDNEVYS  128 (237)
T ss_pred             HHCCHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             65007889999982898399998881344


No 257
>KOG1712 consensus
Probab=23.27  E-value=28  Score=15.34  Aligned_cols=16  Identities=13%  Similarity=0.465  Sum_probs=7.7

Q ss_pred             EEEECHHHHHHHHHHH
Q ss_conf             3530899989889875
Q gi|254780664|r  155 TILTNPQDYPLFLAEM  170 (536)
Q Consensus       155 ~Vi~dp~dY~~~~~el  170 (536)
                      +++.||.-+..+++-+
T Consensus        33 pll~dP~af~~lidlf   48 (183)
T KOG1712          33 PLLLDPKAFKKLIDLF   48 (183)
T ss_pred             HHHCCHHHHHHHHHHH
T ss_conf             6643979999999999


No 258
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=23.27  E-value=50  Score=13.47  Aligned_cols=30  Identities=33%  Similarity=0.445  Sum_probs=23.2

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf             023343469998740156313530899989
Q gi|254780664|r  135 NIDIGGPSMIRAAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       135 nIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~  164 (536)
                      ..+|||--+|-||-+|..-+.++.|-.-|.
T Consensus        98 ~~aIGgnH~iHAaRRN~dit~Iv~NN~iYG  127 (281)
T PRK09628         98 GLAIGGNHTIHGCRRNIDLNHILINNFIYG  127 (281)
T ss_pred             HHHCHHHHHHHHHHHCCCCEEEEECCEEEE
T ss_conf             420308899999980899289998777230


No 259
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704   At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=23.14  E-value=51  Score=13.45  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCC---------------CCHHHHHHHHHHHHCCC
Q ss_conf             121058988831222120011677642455672799961568656545---------------20168999999853321
Q gi|254780664|r  251 AVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVAT---------------ADTLVEAYRRALSCDPI  315 (536)
Q Consensus       251 ~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~---------------~~~~~~Ay~~A~~~DP~  315 (536)
                      |.+--+=.+.+-.|.-.+=|-.||.+++..+.  -|||    =.|..+               ++++..||..|++-=.+
T Consensus       115 Fq~~f~l~~~~r~y~t~eDAr~~v~~Lra~G~--~~vV----G~GL~tDlA~~AgL~gvflYSadsvR~Af~~Al~~~~~  188 (658)
T TIGR02329       115 FQKAFNLDIEQRSYVTEEDARSCVNDLRASGI--EVVV----GAGLITDLAEQAGLVGVFLYSADSVRQAFDDALDLARA  188 (658)
T ss_pred             HHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCC--EEEE----CCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf             99986341688750467789999999976897--5988----76568888876796478763378999999999998632


Q ss_pred             C
Q ss_conf             3
Q gi|254780664|r  316 S  316 (536)
Q Consensus       316 S  316 (536)
                      +
T Consensus       189 ~  189 (658)
T TIGR02329       189 T  189 (658)
T ss_pred             C
T ss_conf             0


No 260
>PRK10424 ilvG operon leader peptide; Provisional
Probab=23.12  E-value=35  Score=14.64  Aligned_cols=14  Identities=43%  Similarity=0.933  Sum_probs=10.2

Q ss_pred             EEEECCCCCCCCCCCC
Q ss_conf             9996156865654520
Q gi|254780664|r  285 CVIVKHMNPCGVATAD  300 (536)
Q Consensus       285 ~vIvKH~NPCGvA~~~  300 (536)
                      ++||  .-|||+|.|.
T Consensus        16 vvii--ippcgaalgr   29 (32)
T PRK10424         16 VVII--IPPCGAALGR   29 (32)
T ss_pred             EEEE--ECCCHHHHCC
T ss_conf             9999--6884576347


No 261
>PRK07394 hypothetical protein; Provisional
Probab=23.07  E-value=51  Score=13.44  Aligned_cols=64  Identities=16%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             EEEEECCCCC-----CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCC-CC-HHHHHHHHHHHHHHHEECCCCHHHHHH
Q ss_conf             7999615686-----5654520168999999853321320045554275-42-145787886543111126879899988
Q gi|254780664|r  284 ACVIVKHMNP-----CGVATADTLVEAYRRALSCDPISAFGGIIAFNRE-VD-QEVAKEVIKVFTEAIIAPTLSEEAADV  356 (536)
Q Consensus       284 a~vIvKH~NP-----CGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~-vd-~~~A~~I~~~F~EvIiAP~f~~eAlei  356 (536)
                      .+-|+||.|.     ||+.++ +++++.            |    +|-. ++ +++++.+.+.=+=-+-||.|.|.-..+
T Consensus       112 G~~VaKHGnrsvssk~G~~sa-DvLe~l------------G----v~i~~l~~e~~~~~l~~~g~~FlfAp~~HPamk~v  174 (342)
T PRK07394        112 GQPVVLHGGDRMPTKYGVPLI-ELWQGL------------G----VDLTGLSLEQVQEGFEQTGLAFIYQPDHFPLAESL  174 (342)
T ss_pred             CCEEEEECCCCCCCCCCCCHH-HHHHHC------------C----CCCCCCCHHHHHHHHHHCCEEEEECHHHCHHHHHH
T ss_conf             995998889988765674279-999975------------9----98677999999999997094798760118899998


Q ss_pred             HHCCCCCE
Q ss_conf             51245531
Q gi|254780664|r  357 LAKKPSMR  364 (536)
Q Consensus       357 L~~KKnlR  364 (536)
                      ..-+|.|.
T Consensus       175 ~~vRk~Lg  182 (342)
T PRK07394        175 IPYRDEIG  182 (342)
T ss_pred             HHHHHHCC
T ss_conf             99999819


No 262
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=22.91  E-value=51  Score=13.42  Aligned_cols=70  Identities=27%  Similarity=0.269  Sum_probs=44.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHH
Q ss_conf             55535533088989999999779984149999488889973176531123200233434699987401563135308999
Q gi|254780664|r   83 KIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQD  162 (536)
Q Consensus        83 ~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~d  162 (536)
                      .=|||=|-+|..++-.......+.+.|.|=   .-.|           --||.|-+|+=|          -++=.-.-+|
T Consensus         5 ~phgg~Lv~r~~~~~~~~~~~~~~~~ield---~~~~-----------~dl~lIa~G~fS----------Pl~GFMne~d   60 (397)
T COG2046           5 PPHGGKLVRRVAEERDAMKSIRKLPRIELD---QNSF-----------GDLELIAYGAFS----------PLTGFMNEKD   60 (397)
T ss_pred             CCCCCHHHHHHCCCCCHHHHHCCCCEEEEC---HHHH-----------HHHHHHHCCCCC----------CCCCCCCHHH
T ss_conf             887521655530233128775138618986---3367-----------789998703777----------4402254888


Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             89889875302345
Q gi|254780664|r  163 YPLFLAEMDVNNGK  176 (536)
Q Consensus       163 Y~~~~~el~~~~g~  176 (536)
                      |.+|+++++-.+|.
T Consensus        61 y~sVv~~mRL~~G~   74 (397)
T COG2046          61 YESVVESMRLANGT   74 (397)
T ss_pred             HHHHHHHCCCCCCC
T ss_conf             99998735156897


No 263
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=22.85  E-value=51  Score=13.41  Aligned_cols=19  Identities=26%  Similarity=0.230  Sum_probs=10.4

Q ss_pred             CHHHHHHHHHHCCCEEEEE
Q ss_conf             8699999999879999994
Q gi|254780664|r   28 GVVEFASRLLSRGIKIIST   46 (536)
Q Consensus        28 gl~~la~~L~~~g~~iisT   46 (536)
                      -+.+++.....+||+-|.-
T Consensus        20 t~~ela~~A~~lGy~~iai   38 (237)
T PRK00912         20 TVLELAEEASHLGFSGICL   38 (237)
T ss_pred             HHHHHHHHHHHCCCCEEEE
T ss_conf             7999999999869868998


No 264
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase; InterPro: IPR005917   Protein kinases are a group of enzymes that possess a catalytic subunit which transfers the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. The enzymes fall into two broad classes, characterised with respect to substrate specificity: serine/threonine specific and tyrosine specific .   Protein kinase function has been evolutionarily conserved from Escherichia coli to Homo sapiens. Protein kinases play a role in a mulititude of cellular processes, including division, proliferation, apoptosis, and differentiation . Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins.   The catalytic subunits of protein kinases are highly conserved, and several structures have been solved , leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases .    Phosphomevalonate kinase (2.7.4.2 from EC)catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. This pathway starts with three molecules of acetyl-CoA, which, in a series of six different enzyme reactions, are converted to isopentanyl pyrophosphate (IPP), the basic C5 isoprene unit and a common intermediate for a number of pathways including isoprenoid and cholesterol biosynthesis. There are two unrelated types of PMK. The first type belongs to the GHMP kinase and includes a eukaryotic group which is typified by Saccharomyces cerevisiae ERG8  and a bacterial group typified by by  Streptococcus pneumoniae  PMK (MvaK2) . The second type includes animal PMKs, typified by human PMK . PMKs of the first type are present in eubacteria, fungi, and plants, while the second type is found only in animals, indicative of a nonorthologous gene displacement early in animal evolution . PMKs of the GHMP kinase type are closely related to mevalonate kinases. The two types of PMK have different consensus ATP-binding motifs: a protein kinase motif in the ERG8 orthologs versus a P-loop or Walker A motif in the animal orthologs. The fact that ERG8 orthologs are found in pathogenic eubacteria and fungi but not in humans makes them attractive targets for the development of antibacterial and/or antifungal drugs . This group of enzymes belongs to the GHMP kinase domain superfamily. GHMP kinases are a unique class of ATP-dependent enzymes (the abbreviation of which refers to the original members: galactokinase, homoserine kinase, mevalonate kinase, and phosphomevalonate kinase) . Enzymes belonging to this superfamily contain three well-conserved motifs, the second of which has the typical sequence Pro-X-X-X-Gly-Leu-X-Ser-Ser-Ala and is involved in ATP binding . The phosphate binding loop in GHMP kinases is distinct from the classical P-loops found in many ATP/GTP binding proteins. The bound ADP molecule adopts a rare syn conformation and is in the opposite orientation from those bound to the P-loop-containing proteins . GHMP kinases display a distinctly bilobal appearance with their N-terminal subdomains dominated by a mixed beta-sheet flanked on one side by alpha-helices and their C-terminal subdomains containing a four stranded anti-parallel beta-sheet , , , ..
Probab=22.79  E-value=31  Score=14.98  Aligned_cols=78  Identities=19%  Similarity=0.278  Sum_probs=49.4

Q ss_pred             CCCCCEEEEECCCCCHHHHH-HHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCC-----------CCCCCEEC
Q ss_conf             13200455542754214578-7886543111126879899988512455315631676677-----------76664020
Q gi|254780664|r  315 ISAFGGIIAFNREVDQEVAK-EVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF-----------HGEEIVLK  382 (536)
Q Consensus       315 ~SAFGGIIa~N~~vd~~~A~-~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~-----------~~~~~~~r  382 (536)
                      .|.|||+||+.. .|.+-.+ .+.+.=++=+++-+.=.-.++-|+.=||||+++  .+...           +..+.+-.
T Consensus       175 aS~ygGWiAyst-fDhdwV~q~~~~~~v~~~L~~~WPgl~i~pL~aPk~l~lli--GWTGsPASt~~LVs~vhr~k~~~~  251 (367)
T TIGR01220       175 ASVYGGWIAYST-FDHDWVKQKVEEVSVDEVLKKDWPGLSIEPLKAPKNLELLI--GWTGSPASTADLVSEVHRRKEEKS  251 (367)
T ss_pred             HHHHHHHHHHCC-CCHHHHHHHHHHHCHHHHHHCCCCCCEEECCCCCCCCEEEE--EECCCCCCCHHHHHHHHHCCCCCC
T ss_conf             101110333057-66688875541303588861477885022067998677988--631788777678888874046762


Q ss_pred             CCCHHHHHCCCCC
Q ss_conf             3210223101233
Q gi|254780664|r  383 TVSGGILVQTRDN  395 (536)
Q Consensus       383 si~GG~LvQ~~D~  395 (536)
                      +.++-||-|.++.
T Consensus       252 a~y~rFl~~s~~C  264 (367)
T TIGR01220       252 AAYERFLEKSRDC  264 (367)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             3688888767899


No 265
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=22.75  E-value=52  Score=13.40  Aligned_cols=108  Identities=14%  Similarity=0.055  Sum_probs=63.4

Q ss_pred             EEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf             98754568699999999879999994276899998899517946534881651985532371555355330889899999
Q gi|254780664|r   21 ISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKF  100 (536)
Q Consensus        21 iSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~  100 (536)
                      ..|||-..|-..-..+.-        .=-.++|+..|.+|+-|..+|.-..=+=-|-+..  .+.-.-|+++-...-.++
T Consensus        44 pTVYd~~HiGhaR~~v~f--------D~l~R~L~~~G~~V~~v~NiTDiDDKii~~A~~~--g~~~~ela~~y~~~f~~d  113 (411)
T TIGR03447        44 ITPYDATHLGHAATYLTF--------DLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERD--GVDWRELGTSQIDLFRED  113 (411)
T ss_pred             CCCCCCCCCCCCHHHHHH--------HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_conf             847888862234168999--------9999999983985589961465425999999882--989999999999999999


Q ss_pred             HHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCE
Q ss_conf             9977998414999948888997317653112320023343469998740156313
Q gi|254780664|r  101 MQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVT  155 (536)
Q Consensus       101 l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~  155 (536)
                      |+.+||.+-|     .||     .-+...+++||.|.       +--.|+|.+++
T Consensus       114 ~~~Lni~~p~-----~~p-----raTe~I~~ii~~I~-------~Li~kG~AY~~  151 (411)
T TIGR03447       114 MEALRVLPPR-----DYI-----GAVESIDEVIEMVE-------KLLAAGAAYEV  151 (411)
T ss_pred             HHHCCCCCCC-----CCC-----CCCCCHHHHHHHHH-------HHHHCCCEEEE
T ss_conf             9974999998-----776-----74347999999999-------99868967982


No 266
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=22.66  E-value=52  Score=13.39  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=15.2

Q ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf             589999719959993898779889999998759779
Q gi|254780664|r  491 GIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAM  526 (536)
Q Consensus       491 ~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m  526 (536)
                      -++.|.++|-..||-||=   +++.+++|.+++|+.
T Consensus        73 Q~~~A~~AGA~F~vSPG~---~p~l~~~~~~~~~P~  105 (205)
T TIGR01182        73 QLRQAVAAGAQFIVSPGL---TPELAKHAKDKGIPI  105 (205)
T ss_pred             HHHHHHHCCCCEEECCCC---CHHHHHHHHHCCCCE
T ss_conf             999999708957876978---889999985088812


No 267
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=22.62  E-value=52  Score=13.38  Aligned_cols=30  Identities=17%  Similarity=0.287  Sum_probs=18.1

Q ss_pred             CCCCCCHHHHH--HHHCCCCCCEEEECHHHHH
Q ss_conf             02334346999--8740156313530899989
Q gi|254780664|r  135 NIDIGGPSMIR--AAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       135 nIDIGGpsmiR--AAAKN~~~V~Vi~dp~dY~  164 (536)
                      .|-=||-+|+|  -.|.+-+.+.+|+|..-+-
T Consensus        90 lIKGgGgal~rEKiva~~a~~~I~i~D~sK~v  121 (213)
T cd01398          90 LIKGGGGALLREKIVASAAKKFIVIADESKLV  121 (213)
T ss_pred             EEEECCHHHHHHHHHHHHHHEEEEEECCCCEE
T ss_conf             89708289898999997422099996601160


No 268
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950    This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=22.61  E-value=52  Score=13.38  Aligned_cols=16  Identities=25%  Similarity=0.329  Sum_probs=7.4

Q ss_pred             CCHHHHHHHHHHCCCE
Q ss_conf             6869999999987999
Q gi|254780664|r   27 TGVVEFASRLLSRGIK   42 (536)
Q Consensus        27 tgl~~la~~L~~~g~~   42 (536)
                      .+.++....|-+.||.
T Consensus       116 p~~~~~L~~LR~~Gy~  131 (244)
T TIGR02253       116 PDVVDTLMELRESGYR  131 (244)
T ss_pred             CCHHHHHHHHHHCCCE
T ss_conf             7688999999864778


No 269
>PRK13124 consensus
Probab=22.55  E-value=52  Score=13.37  Aligned_cols=12  Identities=25%  Similarity=0.562  Sum_probs=4.8

Q ss_pred             HHHHEECCCCHH
Q ss_conf             311112687989
Q gi|254780664|r  341 TEAIIAPTLSEE  352 (536)
Q Consensus       341 ~EvIiAP~f~~e  352 (536)
                      +..+|-||.-.|
T Consensus       114 v~GvIipDLP~e  125 (257)
T PRK13124        114 IDGLLIPDLPLE  125 (257)
T ss_pred             CCEEECCCCCHH
T ss_conf             984777899979


No 270
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase; InterPro: IPR012812    This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=22.49  E-value=47  Score=13.67  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=15.4

Q ss_pred             HCCCCCCCCCCCCCCCH-----HHHHHHHC
Q ss_conf             10589888312221200-----11677642
Q gi|254780664|r  253 LVQGKPLSYNNINDLDA-----AFELVSEF  277 (536)
Q Consensus       253 ql~GKeLSYNNllD~da-----A~~lv~ef  277 (536)
                      .++|+  -|.-+.|+|+     +|.-|+.|
T Consensus       162 ~~~G~--~YvGFvDsDNY~PGAv~EYv~~Y  189 (394)
T TIGR02460       162 AALGA--EYVGFVDSDNYFPGAVNEYVKIY  189 (394)
T ss_pred             HHHCC--CEEEEEECCCCCCCCHHHHHHHH
T ss_conf             98638--70036740678774256889999


No 271
>KOG3185 consensus
Probab=22.46  E-value=51  Score=13.43  Aligned_cols=34  Identities=35%  Similarity=0.634  Sum_probs=27.2

Q ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHC
Q ss_conf             332132004555427542145787886543111126879899988512
Q gi|254780664|r  312 CDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAK  359 (536)
Q Consensus       312 ~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~  359 (536)
                      -.++||.|-+|+||.-|              .++-|+.+.|.-||++.
T Consensus        98 eErlsALGNviaCNDyv--------------AlvH~dldketEeii~d  131 (245)
T KOG3185          98 EERLSALGNVIACNDYV--------------ALVHPDLDKETEEIIAD  131 (245)
T ss_pred             HHHHHHHCCEEEECCEE--------------EEECCCCCHHHHHHHHH
T ss_conf             66776415787754555--------------77337633338999998


No 272
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.35  E-value=33  Score=14.82  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf             23343469998740156313530899989
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYP  164 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~  164 (536)
                      -|||+-.|+.|++.|+.-..++.|-.-|.
T Consensus       102 ~dIG~~~l~ha~~Rn~~i~~iv~DNe~Y~  130 (298)
T PRK11865        102 ADIGFQALSGAMERGHNIVYIMYDNEAYM  130 (298)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCEEEE
T ss_conf             54217889999982998599998471210


No 273
>pfam00464 SHMT Serine hydroxymethyltransferase.
Probab=22.30  E-value=42  Score=14.02  Aligned_cols=14  Identities=21%  Similarity=0.161  Sum_probs=7.2

Q ss_pred             CCCCCHHHHHHHHC
Q ss_conf             22120011677642
Q gi|254780664|r  264 INDLDAAFELVSEF  277 (536)
Q Consensus       264 llD~daA~~lv~ef  277 (536)
                      .+|.|.--+++.++
T Consensus       146 ~ID~d~l~~~a~~~  159 (380)
T pfam00464       146 LIDYDQLEKNAKLF  159 (380)
T ss_pred             CCCHHHHHHHHHHC
T ss_conf             66899999999970


No 274
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=22.24  E-value=53  Score=13.33  Aligned_cols=20  Identities=25%  Similarity=0.297  Sum_probs=8.2

Q ss_pred             HHHHHHHHHCCCEEEEEHHH
Q ss_conf             99999999879999994276
Q gi|254780664|r   30 VEFASRLLSRGIKIISTGGT   49 (536)
Q Consensus        30 ~~la~~L~~~g~~iisTgGT   49 (536)
                      .+|-..|.+.|+...|.--|
T Consensus       106 ~eLr~eL~~~G~~F~S~TDT  125 (597)
T COG0449         106 AELKEELEAKGYVFKSDTDT  125 (597)
T ss_pred             HHHHHHHHHCCCEEECCCCH
T ss_conf             99999999669888567614


No 275
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.24  E-value=53  Score=13.33  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=38.6

Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHH--HHCCCCCCEEEECHHHHHHHH
Q ss_conf             899999997799841499994888899731765-3112320023343469998--740156313530899989889
Q gi|254780664|r   95 PAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRA--AAKNHDYVTILTNPQDYPLFL  167 (536)
Q Consensus        95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRA--AAKN~~~V~Vi~dp~dY~~~~  167 (536)
                      ..-...+.++||+-.++--++   --...-.++ ..+.-.-.|-=||-+|+|-  -|-+-+...||+|..-+-..+
T Consensus        56 ~~t~~l~~~~GI~v~~l~~~~---~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~L  128 (227)
T COG0120          56 FQTEELARELGIPVSSLNEVD---SLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVL  128 (227)
T ss_pred             HHHHHHHHHCCCEECCCCCCC---CCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHC
T ss_conf             999999998297643733367---6665764641118888767037589889899997447189999676015331


No 276
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of,  the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems.  These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein  respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=22.24  E-value=47  Score=13.67  Aligned_cols=16  Identities=31%  Similarity=0.557  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCHHHHHH
Q ss_conf             1985532371555355
Q gi|254780664|r   73 MGGRVKTLHPKIYGGI   88 (536)
Q Consensus        73 l~GRVKTLHP~I~ggI   88 (536)
                      +.|-+|--||-+||.+
T Consensus        18 ~~g~i~d~~~ivHgp~   33 (415)
T cd01977          18 IGGVIKDVIHVIHGPV   33 (415)
T ss_pred             HHCCCCCEEEEEECCC
T ss_conf             5045476599852772


No 277
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=22.22  E-value=53  Score=13.33  Aligned_cols=181  Identities=20%  Similarity=0.243  Sum_probs=84.1

Q ss_pred             HHHHHHHCCCCCEEEEEEECCCHHHHHCCC--CCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHC--
Q ss_conf             999999779984149999488889973176--5311232002334346999874015631353089998988987530--
Q gi|254780664|r   97 HMKFMQDHELESIDLVVVNLYPFEESFCRE--DDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDV--  172 (536)
Q Consensus        97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~--~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~--  172 (536)
                      |...|++-++.   +.+--+|--...-..+  ..++.+.|+||    .+-|-.+++-..+..+.+++|......+=+.  
T Consensus        30 Dlprlr~Ggv~---~q~fai~v~~~~~~~~~~~~~~~al~qi~----~~~~~~~~~~~~~~l~~~~~di~~~~~~gki~~  102 (309)
T cd01301          30 DLPRLREGGVG---GQVFAIFVPPGELQPTWLDALERALEQID----RVRRLIAAYPRIFVLATSSADIRRALKEGKLAA  102 (309)
T ss_pred             CHHHHHHCCCC---EEEEEEEECCCCCCCCHHHHHHHHHHHHH----HHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEE
T ss_conf             79999866998---79999995685789506799999999999----999999869897898789999999997799799


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             ---23456667889999999998742289999875331012113443210123333436788100650576047766821
Q gi|254780664|r  173 ---NNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIA  249 (536)
Q Consensus       173 ---~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~  249 (536)
                         -+|.-.++..  |..    .-..|+.          +   -..+.+++.....+=-|..+          ....|+.
T Consensus       103 ~l~iEg~~~l~~~--l~~----l~~~y~~----------G---vR~~~lt~n~~n~~~~~~~~----------~~~~GLt  153 (309)
T cd01301         103 IISIEGAHALGGD--LAL----LRLLYRL----------G---VRYLGLTWNGDNKFADGCGE----------KRGGGLT  153 (309)
T ss_pred             EEEEECHHHHHCC--HHH----HHHHHHC----------C---CEEEEEEECCCCCCCCCCCC----------CCCCCCC
T ss_conf             9855074455267--999----9999972----------9---76887542489875257899----------8899989


Q ss_pred             CHHHCCCCC----C-CCCCCCCCC-----HHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCHHHHHHHHHHHHCCCCCC
Q ss_conf             012105898----8-831222120-----011677642455672799961568656545-20168999999853321320
Q gi|254780664|r  250 HAVLVQGKP----L-SYNNINDLD-----AAFELVSEFRSQDCAACVIVKHMNPCGVAT-ADTLVEAYRRALSCDPISAF  318 (536)
Q Consensus       250 ~~~ql~GKe----L-SYNNllD~d-----aA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~-~~~~~~Ay~~A~~~DP~SAF  318 (536)
                      .+    ||+    | .-+=++|+.     +.|.++ ++.+    +-+|.-|+|+-.+.- -.|+.+.-.+|.+--     
T Consensus       154 ~~----G~~~v~~mn~lgm~iDvSH~s~~~~~d~~-~~s~----~PviaSHSn~ral~~h~RNl~D~~i~aia~~-----  219 (309)
T cd01301         154 PF----GKELVREMNRLGIIIDLSHLSERTFWDVL-DISN----APVIASHSNARALCDHPRNLTDAQLKAIAET-----  219 (309)
T ss_pred             HH----HHHHHHHHHHHCCEEECCCCCHHHHHHHH-HHCC----CCEEEECCCCCCCCCCCCCCCHHHHHHHHHC-----
T ss_conf             89----99999999860967754879889999999-8458----9989857883321488788999999999984-----


Q ss_pred             CEEEEECCC
Q ss_conf             045554275
Q gi|254780664|r  319 GGIIAFNRE  327 (536)
Q Consensus       319 GGIIa~N~~  327 (536)
                      ||+|.+|.-
T Consensus       220 gGviGi~~~  228 (309)
T cd01301         220 GGVIGVNFY  228 (309)
T ss_pred             CCEEEEECC
T ss_conf             988999514


No 278
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=22.17  E-value=53  Score=13.32  Aligned_cols=31  Identities=19%  Similarity=0.175  Sum_probs=18.0

Q ss_pred             HHHHHHCCCCCCE-EEECHHHHHHHHHHHHCC
Q ss_conf             9998740156313-530899989889875302
Q gi|254780664|r  143 MIRAAAKNHDYVT-ILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus       143 miRAAAKN~~~V~-Vi~dp~dY~~~~~el~~~  173 (536)
                      +-||...+-..+. +-+||+++...++--++.
T Consensus        25 i~~a~~~gv~~i~~~g~~~~~~~~~~~l~~~~   56 (258)
T PRK11449         25 LQRAAQAGVGKIIVPATEAANFARVLALAERY   56 (258)
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             99999829999999349999999999998759


No 279
>pfam01939 DUF91 Protein of unknown function DUF91. The function of this prokaryotic protein is unknown.
Probab=22.14  E-value=53  Score=13.32  Aligned_cols=61  Identities=20%  Similarity=0.330  Sum_probs=40.4

Q ss_pred             EEEEEC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCC
Q ss_conf             799961--568656545201689999998533213200455542754214578788654311112687989998851245
Q gi|254780664|r  284 ACVIVK--HMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKP  361 (536)
Q Consensus       284 a~vIvK--H~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KK  361 (536)
                      -++=+|  ++.+-|    -.++.-|-.++.-||.-+                     ..--+++||+.++.|.++|+.+ 
T Consensus       150 VvVEvKRr~a~ida----V~QL~RYve~l~rd~~~~---------------------~VRGIlvAp~It~~Ar~Ll~d~-  203 (228)
T pfam01939       150 VILELKRRKADLHA----VSQLKRYVDSLKEDYVEA---------------------KVRGVLVAPSITEGAKKLLEEE-  203 (228)
T ss_pred             EEEEEEEECCCHHH----HHHHHHHHHHHHHCCCCC---------------------CCEEEEECCCCCHHHHHHHHHC-
T ss_conf             99999740378207----999999999986554888---------------------6039999985898899999975-


Q ss_pred             CCEEEECCC
Q ss_conf             531563167
Q gi|254780664|r  362 SMRFLKTSS  370 (536)
Q Consensus       362 nlRil~~~~  370 (536)
                      +++.+.+..
T Consensus       204 Gle~v~ldp  212 (228)
T pfam01939       204 GLEFRKLEP  212 (228)
T ss_pred             CCEEEEECC
T ss_conf             972899368


No 280
>PRK06182 short chain dehydrogenase; Validated
Probab=22.13  E-value=53  Score=13.31  Aligned_cols=40  Identities=20%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             CEEEEEEEEECCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf             136989987545686-99999999879999994276899998
Q gi|254780664|r   15 AVKTALISVHNKTGV-VEFASRLLSRGIKIISTGGTCQLLEE   55 (536)
Q Consensus        15 ~ikrALiSV~dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~   55 (536)
                      +=|.|||.=... || ..+|+.|.+.|+.++.++-+...|++
T Consensus         2 k~Kv~lITGass-GIG~a~a~~la~~G~~V~~~~r~~~~l~~   42 (273)
T PRK06182          2 KKKVALVTGASS-GIGKATARKLIAEGFTVYGAARRVDKMED   42 (273)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             469899906320-99999999999879989999798999999


No 281
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119   This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=22.11  E-value=53  Score=13.31  Aligned_cols=18  Identities=17%  Similarity=0.296  Sum_probs=8.8

Q ss_pred             HHHHHHHHCCC---CCCEEEE
Q ss_conf             46999874015---6313530
Q gi|254780664|r  141 PSMIRAAAKNH---DYVTILT  158 (536)
Q Consensus       141 psmiRAAAKN~---~~V~Vi~  158 (536)
                      ++|||+.-+-.   .++|-|+
T Consensus        11 s~~L~gLk~~~~ri~~iTAIV   31 (331)
T TIGR01826        11 SVLLRGLKKLDSRISNITAIV   31 (331)
T ss_pred             HHHHHHHHHCCCCEEEEEEEE
T ss_conf             789988753289414776899


No 282
>TIGR00601 rad23 UV excision repair protein Rad23; InterPro: IPR004806   All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. Rad23 contains a ubiquitin-like domain that interacts with catalytically active proteasomes and two ubiquitin (Ub)-associated (UBA) sequences that bind Ub. Rad23 interacts with ubiquitinated cellular proteins through the synergistic action of its UBA domains.    In humans, Rad23 complexes with the XPC protein.; GO: 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=22.05  E-value=42  Score=14.05  Aligned_cols=353  Identities=18%  Similarity=0.254  Sum_probs=157.4

Q ss_pred             HHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHHCC---CCHHCCCCCCCCCCHHHHH-HHHCCCCHHHHHHHHHCCCC
Q ss_conf             9999879999--9942768999988995179465348---8165198553237155535-53308898999999977998
Q gi|254780664|r   34 SRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDITK---FPEIMGGRVKTLHPKIYGG-ILSIRDNPAHMKFMQDHELE  107 (536)
Q Consensus        34 ~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~Tg---fpEil~GRVKTLHP~I~gg-IL~~r~~~~~~~~l~~~~i~  107 (536)
                      |-|.+..|+|  ++-.-|-+.||++      |++--|   ||+   +|-|-    ||.| ||.      |.+.+.+++|.
T Consensus         7 KtLq~~~f~Isd~~P~~tv~~lK~K------I~~~~gkDa~pv---~~qKL----IY~GKiL~------Dd~t~~Ey~I~   67 (453)
T TIGR00601         7 KTLQQQKFKISDVEPDETVKELKEK------IEQEQGKDAYPV---AQQKL----IYSGKILS------DDKTVSEYKIK   67 (453)
T ss_pred             ECCCCCEEEEECCCCCCHHHHHHHH------HHHHCCCCCCCH---HCCEE----EECCCCCC------CCCCHHHCCCC
T ss_conf             5145775366307713048999999------997608735620---02021----00453316------75415442665


Q ss_pred             CEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHH-------------------HHC-CCCCCE------------
Q ss_conf             414999948888997317653112320023343469998-------------------740-156313------------
Q gi|254780664|r  108 SIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRA-------------------AAK-NHDYVT------------  155 (536)
Q Consensus       108 ~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRA-------------------AAK-N~~~V~------------  155 (536)
                      -=|-|||=+== .|+... . .--...---.--|+-+-+                   -+. |-.-+.            
T Consensus        68 E~~FvVvMV~k-~K~~~t-a-vPattqPsstPsPttvsssPav~~~~~P~~~P~sAp~P~p~~~~~as~~~~~~~APa~~  144 (453)
T TIGR00601        68 EKDFVVVMVSK-PKTTTT-A-VPATTQPSSTPSPTTVSSSPAVTKTTEPAATPESAPTPTPENAPPASPAEKKSAAPAST  144 (453)
T ss_pred             CCCEEEEEECC-CCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             48758998515-765331-2-34455777777875111553435567887774325788788888888886566758656


Q ss_pred             --------------EEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC-CCHHHHHH
Q ss_conf             --------------5308999898898753023456667889999999998742289999875331---01-21134432
Q gi|254780664|r  156 --------------ILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANA---ES-ENFPDYLN  217 (536)
Q Consensus       156 --------------Vi~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~---~~-~~~p~~~~  217 (536)
                                    +...++-|..       ..|..+.+--..=|.-+|..=+.|..+|.+-|.=.   +. +..-    
T Consensus       145 ~~~~~~~~e~~~~~~~~~~~~~~~-------s~~~~~r~nlfEDA~S~lV~G~~~e~~~~~Im~MGGGmYeRe~V~----  213 (453)
T TIGR00601       145 VAESTPTEEEVTATAPASPDTSAP-------SEGDSDRNNLFEDAASTLVVGSEREETIEEIMEMGGGMYEREEVE----  213 (453)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH----
T ss_conf             776788875443566688776666-------776432345444433111010007889999986278835088999----


Q ss_pred             HCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf             101233334367-8810065057604776682101210589888312221200116776424556727999615686565
Q gi|254780664|r  218 ITAVKKQEMRYG-ENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGV  296 (536)
Q Consensus       218 ~~~~~~~~LRYG-ENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGv  296 (536)
                            .-||=- =||| +|.=|             .|-|=+=+.-+-.--.+|-.++..+...  ++      ..|.+.
T Consensus       214 ------rALRAafNNPd-RAVEY-------------LL~GIPe~~~~~~p~~sa~~~aA~~q~~--~~------~~~~~~  265 (453)
T TIGR00601       214 ------RALRAAFNNPD-RAVEY-------------LLTGIPEDLEAREPEESAAALAAAEQPS--EA------AATTET  265 (453)
T ss_pred             ------HHHHHHCCCHH-HHHHH-------------HCCCCCCCCCCCCHHHHHHHHHHHHCCC--CC------CCCCCC
T ss_conf             ------99974027814-78985-------------3068886500146356899998760773--00------356778


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCC---CCEEEECCCCCC
Q ss_conf             45201689999998533213200455542754214578788654311112687989998851245---531563167667
Q gi|254780664|r  297 ATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKP---SMRFLKTSSLLD  373 (536)
Q Consensus       297 A~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KK---nlRil~~~~~~~  373 (536)
                      -...++.++=..+=++-|..    .  ++..-...++              +.=..-|++|+.-+   +||=+.-.    
T Consensus       266 p~~~~v~~~Aa~~~N~~~~~----l--~~~~~~t~~~--------------~~G~~PLefLR~~PqFq~lRq~vq~----  321 (453)
T TIGR00601       266 PQEDDVFEQAALAENALSLA----L--FTEETATDAA--------------GVGGDPLEFLRNQPQFQQLRQVVQQ----  321 (453)
T ss_pred             CCCHHHHHHHCCCCCCCCCC----C--CCCCCCCCCC--------------CCCCCCHHHCCCCHHHHHHHHHHHC----
T ss_conf             88636998710467765112----3--5666665434--------------3677732211673656767277612----


Q ss_pred             CCCCCCEECCCCHHHHHCC--CC-CC---CC--CCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE-------
Q ss_conf             7766640203210223101--23-34---53--1000-12467778688988899999986005667799996-------
Q gi|254780664|r  374 FHGEEIVLKTVSGGILVQT--RD-NV---VD--NKEL-TVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAK-------  437 (536)
Q Consensus       374 ~~~~~~~~rsi~GG~LvQ~--~D-~~---~~--~~~~-~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak-------  437 (536)
                       ++      ++.--+|.|=  .| .+   |.  .+.| ..  -..|-++.+.|.+=         +..=+.-.       
T Consensus       322 -NP------~~L~~lL~~iG~~nPQL~~~I~~h~E~F~ql--L~Epv~~nmqDv~~---------~~~d~~~gGGG~~~~  383 (453)
T TIGR00601       322 -NP------QLLPPLLQQIGQENPQLLQQISQHPEEFLQL--LNEPVEENMQDVLE---------GESDMVGGGGGEDIE  383 (453)
T ss_pred             -CH------HHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH--HCCCCCHHHHHHHC---------CCCCCCCCCCCCCCC
T ss_conf             -66------7899999973453737999965260678887--50473135898732---------467776787556776


Q ss_pred             -CCEEEEECCCCCC-----HHHHH---HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHC
Q ss_conf             -8938997296888-----89999---9999998764200122223487099973668685558999971
Q gi|254780664|r  438 -DGRTVGIGSGQTS-----RVDST---RFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKA  498 (536)
Q Consensus       438 -~~~tiGiGaGQ~s-----RVda~---~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~  498 (536)
                       .|..=--|.||++     .|+-+   +-||+|-+.+|++       +|-|  =.|||==.=+=|+|+++
T Consensus       384 ~~G~iae~g~gq~~GeGsf~I~vTp~e~EAIeRL~~LGF~-------r~LV--IqAYfACdKNEeLAAN~  444 (453)
T TIGR00601       384 VTGEIAEAGVGQMNGEGSFQIQVTPEEKEAIERLCALGFD-------RGLV--IQAYFACDKNEELAANY  444 (453)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCC-------CCCE--EEEEECCCCCHHHHHHH
T ss_conf             4355524467865665211676341257789999971798-------6751--43221011017999989


No 283
>pfam08887 GAD-like GAD-like domain. This domain is functionally uncharacterized, but it appears to be distantly related to the GAD domain pfam02938.
Probab=21.97  E-value=15  Score=17.27  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=20.2

Q ss_pred             HHHHHCC-CCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             1232002-33434699987401563135308999898898753
Q gi|254780664|r  130 YTMVENI-DIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMD  171 (536)
Q Consensus       130 ~~~IEnI-DIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~  171 (536)
                      ++++|.- ..|..++.       .--.-+|+|.||..+++++-
T Consensus        34 ~~Ll~~W~~~G~g~~~-------dG~f~~vnP~ey~~vl~~w~   69 (109)
T pfam08887        34 EQLLEYWIEHGWGGYG-------DGLFWIVNPQEYKPVVDSWL   69 (109)
T ss_pred             HHHHHHHHHCCCCHHC-------CCEEEEECHHHHHHHHHHHH
T ss_conf             9999999980960220-------85599758799899999997


No 284
>PRK13129 consensus
Probab=21.87  E-value=54  Score=13.28  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=16.2

Q ss_pred             HHHHHHHHEECCCCHHHHHHHH---CCCCCEEEEC
Q ss_conf             8654311112687989998851---2455315631
Q gi|254780664|r  337 IKVFTEAIIAPTLSEEAADVLA---KKPSMRFLKT  368 (536)
Q Consensus       337 ~~~F~EvIiAP~f~~eAleiL~---~KKnlRil~~  368 (536)
                      .+.=++.+|.||.-.|-.+-+.   ++-++.++.+
T Consensus       120 ~~~GvdGvIipDLP~eE~~~~~~~~~~~gl~~I~l  154 (267)
T PRK13129        120 AAAGVAGLVVPDLPLEEAEKLSPIAAERGIDLILL  154 (267)
T ss_pred             HHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             86698757678999899999999998539816899


No 285
>TIGR02036 dsdC D-serine deaminase transcriptional activator; InterPro: IPR011781    This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including Escherichia coli, Vibrio cholerae, and Colwellia psychrerythraea..
Probab=21.69  E-value=49  Score=13.54  Aligned_cols=15  Identities=33%  Similarity=0.561  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHCCCEE
Q ss_conf             889999998759779
Q gi|254780664|r  512 DSEAITVADQHGIAM  526 (536)
Q Consensus       512 D~evI~aan~~gi~m  526 (536)
                      |=.||+|-|..||||
T Consensus       233 DLAVIAA~NnaGvAM  247 (302)
T TIGR02036       233 DLAVIAAMNNAGVAM  247 (302)
T ss_pred             HHHHHHHHHHCCHHC
T ss_conf             799999985044110


No 286
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.68  E-value=54  Score=13.25  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=15.5

Q ss_pred             HHHHHHHHHH-CCCEEEE----EHHH---HHHHHHCCCCEEEH
Q ss_conf             6999999998-7999999----4276---89999889951794
Q gi|254780664|r   29 VVEFASRLLS-RGIKIIS----TGGT---CQLLEEEGIPVTSV   63 (536)
Q Consensus        29 l~~la~~L~~-~g~~iis----TgGT---a~~l~~~gi~v~~V   63 (536)
                      -...++.|.+ .++.++-    |+-|   +..+.++++|+...
T Consensus        55 a~~~a~~Li~~~~V~~iiG~~~S~~~~a~~~~~~~~~vp~i~~   97 (344)
T cd06345          55 AVRAFERLVSQDKVDAVVGGYSSEVVLALQDVAAENKVPFIVT   97 (344)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             9999999996599708746768578899999999869549980


No 287
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=21.67  E-value=54  Score=13.25  Aligned_cols=43  Identities=12%  Similarity=0.041  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHH---HHEECCCCHHHHHHHHC
Q ss_conf             20045554275421457878865431---11126879899988512
Q gi|254780664|r  317 AFGGIIAFNREVDQEVAKEVIKVFTE---AIIAPTLSEEAADVLAK  359 (536)
Q Consensus       317 AFGGIIa~N~~vd~~~A~~I~~~F~E---vIiAP~f~~eAleiL~~  359 (536)
                      .+-+|++.|...-....+.+.+.=..   .|..-|-+++|++-.+.
T Consensus       211 ~id~V~a~ND~mAlGA~~Al~~aG~~~~v~V~G~Dg~~~al~~I~~  256 (330)
T PRK10355        211 KIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAAIKRIVA  256 (330)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHC
T ss_conf             5169998997148999999996699999769902799899999974


No 288
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=21.53  E-value=54  Score=13.23  Aligned_cols=183  Identities=12%  Similarity=0.150  Sum_probs=78.8

Q ss_pred             CCCEEEEECCCCCH--HHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHH-HCCC
Q ss_conf             20045554275421--45787886543111126879899988512455315631676677766640203210223-1012
Q gi|254780664|r  317 AFGGIIAFNREVDQ--EVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGIL-VQTR  393 (536)
Q Consensus       317 AFGGIIa~N~~vd~--~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~L-vQ~~  393 (536)
                      =||==|.+.|+=+.  +++..+.+.=-|++--|.++.+-..-+.     ..  +....+|  +.+-+.|..|--. .+.-
T Consensus       249 LfG~rVLVtRtreQA~~ls~~L~~~GA~v~E~PtI~~~~~~~~~-----~~--i~~l~~y--dwlvFTS~NgV~~Ff~~L  319 (474)
T PRK07168        249 LHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLTL-----EQ--INEIFNV--DRLVFCSAESVEILMQSC  319 (474)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH-----HH--HHHHCCC--CEEEEECHHHHHHHHHHH
T ss_conf             78867997786677699999999769938994453168856379-----99--8753338--989993878999999999


Q ss_pred             C-CCCCCCCC--CCCCCCCCCHHHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHH---------
Q ss_conf             3-34531000--124677786889888-9999998600566779999689389972968888999999999---------
Q gi|254780664|r  394 D-NVVDNKEL--TVVTKRSPTDQELRD-MKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAI---------  460 (536)
Q Consensus       394 D-~~~~~~~~--~vVT~~~pt~~e~~d-L~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~---------  460 (536)
                      . ...|-..+  ++..=-..|.++++. =+|+..+ +...+--+++.          -..+|+..++--+-         
T Consensus       320 ~~~g~D~R~L~~kiaaiG~aT~~~L~~~Gll~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~t~~  388 (474)
T PRK07168        320 SKYKKDIRSLQAELQHMNVATQEKLMQYGLLSKEA-KFSSDTTVYLG----------RNINRIAFIQEKIGAGSYMMTHK  388 (474)
T ss_pred             HHCCCCHHHCCCEEEEECHHHHHHHHHCCCCCCCC-CCCCCEEEECC----------CCHHHHHHHHHCCCCCCEEEECC
T ss_conf             97398457607617887589999999769734422-03686589804----------55116788870578753032100


Q ss_pred             -----HHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHH----HHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf             -----9876420012222348709997366868555899----9971995999389877988999999875977
Q gi|254780664|r  461 -----KAHNISAQADVKSMTNGSVIASEAFYPFPDGIVE----AIKAGVTAVIQPGGSVRDSEAITVADQHGIA  525 (536)
Q Consensus       461 -----KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~----aa~~Gi~aIiqPGGSirD~evI~aan~~gi~  525 (536)
                           |-.+.... ...+..-.+|     +||=+-+|+.    ..+.|..-|..--=|--|+-+.++||+.|..
T Consensus       389 ~~~~~~~~~~~~r-~~~~~~~~~v-----~f~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (474)
T PRK07168        389 YTIDHRFDEVHSR-MLSEFLWDSI-----VFEGRASIDTFLAEVKRLGFIDIVTLPFSYTDVPTLHYANKVGFH  456 (474)
T ss_pred             EEEHHHHHHHHHH-HCCCCCEEEE-----EECCHHHHHHHHHHHHHCCCHHHHCCCCHHCCCHHHHHHHHCCCC
T ss_conf             0001236777763-2343540389-----965800699999998751512122277300372888888760754


No 289
>pfam02449 Glyco_hydro_42 Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
Probab=21.46  E-value=49  Score=13.57  Aligned_cols=29  Identities=28%  Similarity=0.244  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             01689999998533213200455542754
Q gi|254780664|r  300 DTLVEAYRRALSCDPISAFGGIIAFNREV  328 (536)
Q Consensus       300 ~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v  328 (536)
                      +.+.+||-.+|=+-..|+|.-|..=+...
T Consensus       166 d~LN~aWgt~fWs~~y~~w~~i~~P~~~~  194 (376)
T pfam02449       166 DALNEAWGTAFWSQTYSDFDEIEPPRPAP  194 (376)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHCCCCCCCC
T ss_conf             99999964554236069888768876788


No 290
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.41  E-value=55  Score=13.21  Aligned_cols=17  Identities=18%  Similarity=0.229  Sum_probs=6.2

Q ss_pred             EEEEECCCCCHHHHHHH
Q ss_conf             45554275421457878
Q gi|254780664|r  320 GIIAFNREVDQEVAKEV  336 (536)
Q Consensus       320 GIIa~N~~vd~~~A~~I  336 (536)
                      +|++.|...-...++.+
T Consensus       204 ~I~a~ND~mAlGA~~Al  220 (303)
T cd01539         204 AVIANNDAMALGAIEAL  220 (303)
T ss_pred             EEEECCCHHHHHHHHHH
T ss_conf             99978947799999999


No 291
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=21.40  E-value=55  Score=13.22  Aligned_cols=38  Identities=34%  Similarity=0.383  Sum_probs=25.4

Q ss_pred             EECCCCCHHHHHHHH----HHHHHHHEECCCCHHHHHHHHCCC
Q ss_conf             542754214578788----654311112687989998851245
Q gi|254780664|r  323 AFNREVDQEVAKEVI----KVFTEAIIAPTLSEEAADVLAKKP  361 (536)
Q Consensus       323 a~N~~vd~~~A~~I~----~~F~EvIiAP~f~~eAleiL~~KK  361 (536)
                      |+-..|+.+.|..|.    +..+|.-=.| .++||-+||.+|.
T Consensus       129 A~en~I~~~nA~~i~a~~ck~IvEgANgP-~T~eAd~iL~~kG  170 (254)
T cd05313         129 ATQNEVDAEDAKLLVKNGCKYVAEGANMP-CTAEAIEVFRQAG  170 (254)
T ss_pred             CCCCCCCHHHHHHHHHCCCEEEEECCCCC-CCHHHHHHHHHCC
T ss_conf             54667899999999967982998658899-9878999999889


No 292
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=21.38  E-value=55  Score=13.21  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             233434699987401563135308999898898753023456667889999999998
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSR  192 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~  192 (536)
                      |-.|--.+++-|++-|..|.|++-.+        -. .++-++.+.|..|..+++.+
T Consensus        13 it~GHldii~ra~~lfD~viv~v~~N--------p~-K~~~f~~eeR~~mi~~~~~~   60 (159)
T PRK00168         13 ITNGHLDIIERASKLFDEVIVAVAIN--------PS-KKPLFSLEERVELIREVTAH   60 (159)
T ss_pred             CCHHHHHHHHHHHHHCCEEEEECCCC--------CC-CCCCCCHHHHHHHHHHHHCC
T ss_conf             84479999999998679999940569--------88-77778999999999998515


No 293
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system.  While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR.  AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=21.36  E-value=55  Score=13.21  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=13.3

Q ss_pred             EEECCCCCCCCHHHHHHHC------CCCEEEE
Q ss_conf             9973668685558999971------9959993
Q gi|254780664|r  480 IASEAFYPFPDGIVEAIKA------GVTAVIQ  505 (536)
Q Consensus       480 laSDAFFPF~D~ie~aa~~------Gi~aIiq  505 (536)
                      +.++..=||..|-.+....      |++.-||
T Consensus       316 C~~~~~~~w~~G~~l~~~ik~v~~~GlTG~I~  347 (382)
T cd06380         316 CLANPAVPWEHGIDIERALKKVQFEGLTGNVQ  347 (382)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf             57777876676789999997188866422249


No 294
>TIGR02434 CobF precorrin-6A synthase (deacetylating); InterPro: IPR012797   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobF precorrin-6A synthase (2.1.1.152 from EC), a pathway-specific enzyme in the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, the extruded acyl group is then removed in the subsequent step, which also sees a methyl group added at C-1 in a reaction catalysed by CobF. The product of this reaction is precorrin-6A, which is subsequently reduced by an NADH-dependent reductase to precorrin-6B . This entry identifies CobF in high GC Gram-positive, alphaproteobacteria and pseudomonas-related species..
Probab=21.36  E-value=46  Score=13.76  Aligned_cols=11  Identities=36%  Similarity=0.767  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHH
Q ss_conf             22899998753
Q gi|254780664|r  195 SYDTAICRWLA  205 (536)
Q Consensus       195 ~YD~~Ia~~l~  205 (536)
                      .|..++.+|=.
T Consensus        80 ~Y~~~V~~WH~   90 (259)
T TIGR02434        80 DYRAAVDDWHA   90 (259)
T ss_pred             CHHHHHHHHHH
T ss_conf             42778999999


No 295
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=21.29  E-value=46  Score=13.76  Aligned_cols=36  Identities=14%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             HHHHH-HHHHHHHHHHCCCCCEEEEE-ECCEEEEECCC
Q ss_conf             88988-89999998600566779999-68938997296
Q gi|254780664|r  412 DQELR-DMKFAFKVVKHVKSNAVVYA-KDGRTVGIGSG  447 (536)
Q Consensus       412 ~~e~~-dL~FA~kv~K~vkSNAIv~a-k~~~tiGiGaG  447 (536)
                      .-||+ ..+|..--++..++-+|..+ -|...-.++.-
T Consensus       189 ~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~e~~~~  226 (248)
T COG2820         189 NIEMESATLFTLGSLRGLRAGAVLGVIANRTQGEQGVA  226 (248)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             66778999999998718342418999824224221433


No 296
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=21.14  E-value=55  Score=13.18  Aligned_cols=76  Identities=21%  Similarity=0.369  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHC-CCE-E-EEEHHH-----HHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHH-
Q ss_conf             6869999999987-999-9-994276-----899998899517946534881651985532371555355330889899-
Q gi|254780664|r   27 TGVVEFASRLLSR-GIK-I-ISTGGT-----CQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAH-   97 (536)
Q Consensus        27 tgl~~la~~L~~~-g~~-i-isTgGT-----a~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~-   97 (536)
                      .+|.+|.+.|.+. |++ | +.|-|+     ++.|+++|+.-..||=            -||.|..|.-|- +++.-.. 
T Consensus        76 ~dl~~li~~l~~~~gi~~islTTNG~lL~~~a~~Lk~aGL~rvNISL------------DsLd~~~f~~IT-r~~~l~~V  142 (329)
T PRK13361         76 TGCDQLVARLGKLPGLEELSMTTNGSRLARFAAELADAGLKRLNISL------------DTLNPDLFAALT-RNGRLERV  142 (329)
T ss_pred             CCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC------------CCCCHHHHHHHH-CCCCHHHH
T ss_conf             68899999986179977189966477689999999977998699735------------779999999772-89976999


Q ss_pred             ---HHHHHHCCCCCEEEEEEE
Q ss_conf             ---999997799841499994
Q gi|254780664|r   98 ---MKFMQDHELESIDLVVVN  115 (536)
Q Consensus        98 ---~~~l~~~~i~~IDlVvvN  115 (536)
                         +..+.+.|+.++-+=+|=
T Consensus       143 l~gI~aA~~~G~~~VKiN~V~  163 (329)
T PRK13361        143 IAGIDAAKAAGFERIKLNAVI  163 (329)
T ss_pred             HHHHHHHHHCCCCEEEEEEEE
T ss_conf             999999997799738899998


No 297
>PRK13118 consensus
Probab=21.10  E-value=55  Score=13.17  Aligned_cols=13  Identities=23%  Similarity=0.240  Sum_probs=6.2

Q ss_pred             HHHHHEECCCCHH
Q ss_conf             4311112687989
Q gi|254780664|r  340 FTEAIIAPTLSEE  352 (536)
Q Consensus       340 F~EvIiAP~f~~e  352 (536)
                      =+..+|-||.-.|
T Consensus       122 GvdGvIipDLP~e  134 (269)
T PRK13118        122 GVDGLILVDLPPE  134 (269)
T ss_pred             CCCEEECCCCCHH
T ss_conf             9974645899978


No 298
>PTZ00136 eukaryotic translation initiation factor 6; Provisional
Probab=20.99  E-value=56  Score=13.16  Aligned_cols=40  Identities=30%  Similarity=0.472  Sum_probs=31.8

Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEE
Q ss_conf             321320045554275421457878865431111268798999885124553156
Q gi|254780664|r  313 DPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFL  366 (536)
Q Consensus       313 DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil  366 (536)
                      +..+|.|-+|++|...              .++-|++++|+.++++.-=+.-+.
T Consensus        99 ~k~tAlGN~Il~ND~~--------------AlvhP~l~~e~~e~I~dvLgVev~  138 (247)
T PTZ00136         99 ERLSALGNCIACNDYV--------------ALIHTDLDRETEEIIADVLGVEVF  138 (247)
T ss_pred             CCCCCCCCEEEECCCE--------------EEECCCCCHHHHHHHHHHCCCCEE
T ss_conf             5434501499975731--------------685488998999999762486289


No 299
>PRK06846 deaminase; Validated
Probab=20.83  E-value=56  Score=13.13  Aligned_cols=15  Identities=20%  Similarity=0.386  Sum_probs=10.4

Q ss_pred             CHHCCCCCCCCCCHH
Q ss_conf             165198553237155
Q gi|254780664|r   70 PEIMGGRVKTLHPKI   84 (536)
Q Consensus        70 pEil~GRVKTLHP~I   84 (536)
                      =+|=|||++.+.|..
T Consensus        34 i~I~dGkI~~I~~~~   48 (410)
T PRK06846         34 LEIQDGKIVAIRENK   48 (410)
T ss_pred             EEEECCEEEEEECCC
T ss_conf             998589898870588


No 300
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=20.79  E-value=50  Score=13.51  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=18.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHH
Q ss_conf             9729688889999999999876
Q gi|254780664|r  443 GIGSGQTSRVDSTRFAAIKAHN  464 (536)
Q Consensus       443 GiGaGQ~sRVda~~iA~~KA~~  464 (536)
                      =-|.|.+...+|+++|+.||-.
T Consensus        67 V~GGG~sGQa~AirlaIaRaL~   88 (130)
T PRK00132         67 VKGGGLSGQAGAIRHGIARALL   88 (130)
T ss_pred             EECCCHHHHHHHHHHHHHHHHH
T ss_conf             9798898999999999999999


No 301
>PRK12828 short chain dehydrogenase; Provisional
Probab=20.78  E-value=56  Score=13.13  Aligned_cols=43  Identities=19%  Similarity=0.097  Sum_probs=31.7

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf             7613698998754568699999999879999994276899998
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEE   55 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~   55 (536)
                      +++=|.|||+=.-+-==...|+.|.+.|..++-++-..+.+.+
T Consensus         4 ~L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~   46 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ   46 (239)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             9698989994725489999999999879989999798778999


No 302
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=20.55  E-value=57  Score=13.09  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=28.1

Q ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf             7613698998754568699999999879999994276899998
Q gi|254780664|r   13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEE   55 (536)
Q Consensus        13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~   55 (536)
                      +++=|.|||.=.-+-==..+|+.|.+.|+.++-++-..+.+++
T Consensus         3 ~L~gK~alITGgs~GIG~aia~~la~~G~~V~~~~r~~~~~~~   45 (253)
T PRK12826          3 DLMGRVALVTGAARGIGRAIAVRFAADGADVIVVDICGQAAAA   45 (253)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             8899889994897789999999999879989999898899999


No 303
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=20.37  E-value=57  Score=13.07  Aligned_cols=55  Identities=22%  Similarity=0.192  Sum_probs=24.7

Q ss_pred             CCCCCCCEEEEECC--CCCHHHHHHHHHHHHHHHEECCCCHHHHHHHH-CCCCCEEEECCC
Q ss_conf             32132004555427--54214578788654311112687989998851-245531563167
Q gi|254780664|r  313 DPISAFGGIIAFNR--EVDQEVAKEVIKVFTEAIIAPTLSEEAADVLA-KKPSMRFLKTSS  370 (536)
Q Consensus       313 DP~SAFGGIIa~N~--~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~-~KKnlRil~~~~  370 (536)
                      |.+=+.+|+.++=.  ....++.+.+.++=.=-++||+=   |-.+++ .=|..|.+.+..
T Consensus        88 ~~~l~~~G~~~~iGKG~~~~~~~ea~~~~kavyl~~~gG---aA~L~a~~IK~~~~v~~~d  145 (184)
T COG1838          88 DELLEQTGVLAMIGKGGRGPETVEACKKHKAVYLVAPGG---AAALAAKSIKSVRCVAYED  145 (184)
T ss_pred             HHHHHHCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCH---HHHHHHHHHHHEEEEEECC
T ss_conf             999974182999964876778899998759289972626---9999998640323786234


No 304
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=20.29  E-value=24  Score=15.77  Aligned_cols=42  Identities=17%  Similarity=0.340  Sum_probs=19.2

Q ss_pred             CCCCCCCCCCHHHHHHHHCCC---CHHHHHHHHHCCCCCEEEEEE
Q ss_conf             198553237155535533088---989999999779984149999
Q gi|254780664|r   73 MGGRVKTLHPKIYGGILSIRD---NPAHMKFMQDHELESIDLVVV  114 (536)
Q Consensus        73 l~GRVKTLHP~I~ggIL~~r~---~~~~~~~l~~~~i~~IDlVvv  114 (536)
                      ||-|.+-|.-..+-++|---+   .+..+++|++-||..|-+||-
T Consensus        10 ~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvG   54 (231)
T COG4750          10 LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVG   54 (231)
T ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf             566533131028767887358550999999999779861899963


No 305
>PRK00120 putative deoxyribonucleotide triphosphate pyrophosphatase; Reviewed
Probab=20.19  E-value=33  Score=14.83  Aligned_cols=30  Identities=27%  Similarity=0.460  Sum_probs=17.0

Q ss_pred             EEEEEEEEECCCCHHHHHHHHHHCCCEEEE
Q ss_conf             369899875456869999999987999999
Q gi|254780664|r   16 VKTALISVHNKTGVVEFASRLLSRGIKIIS   45 (536)
Q Consensus        16 ikrALiSV~dKtgl~~la~~L~~~g~~iis   45 (536)
                      |++-++.-.++..+.|+.+.|...|+++++
T Consensus         2 m~ki~~aT~N~~K~~E~~~il~~~~~~i~~   31 (197)
T PRK00120          2 MKKLVLASHNAGKLRELAALLAPFGLEVVS   31 (197)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             863999929867999999988765988975


No 306
>PRK02478 Maf-like protein; Reviewed
Probab=20.17  E-value=47  Score=13.71  Aligned_cols=46  Identities=22%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCC--HHHHHHHHC
Q ss_conf             367881006505760477668210121058988831222120--011677642
Q gi|254780664|r  227 RYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLD--AAFELVSEF  277 (536)
Q Consensus       227 RYGENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNNllD~d--aA~~lv~ef  277 (536)
                      ++||.|-.+|.-|....  .|...++.+.|   ||+|++-+-  .-++++++|
T Consensus       147 ~~~~~~~~kAG~Y~Iqg--~g~~~i~~I~G---d~~nVvGLPl~~l~~~L~e~  194 (199)
T PRK02478        147 RVGDKALSSVGAYQLEG--EGIQLFEKIEG---DYFTIVGLPLLPLLAKLREL  194 (199)
T ss_pred             HHCCCCCCEEEEEEECC--CHHHCEEEEEC---CCCCCCCCCHHHHHHHHHHC
T ss_conf             74997465415997716--56764750389---86214565699999999974


No 307
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.01  E-value=58  Score=13.01  Aligned_cols=30  Identities=40%  Similarity=0.485  Sum_probs=26.0

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECHHHHHH
Q ss_conf             233434699987401563135308999898
Q gi|254780664|r  136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPL  165 (536)
Q Consensus       136 IDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~  165 (536)
                      -+|||-.++-|+-.|..-+.++.|-.-|..
T Consensus        98 ~~IG~nh~ihA~rRN~dit~iv~nN~iYGl  127 (286)
T PRK11866         98 YGIGLQHLIHAARRNVDITYIVSNNQVYGL  127 (286)
T ss_pred             HCCHHHHHHHHHHHCCCCEEEEECCHHHCC
T ss_conf             042388999999848993799988743214


Done!