HHsearch alignment for GI: 254780664 and conserved domain: pfam06506
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=92.78 E-value=0.66 Score=27.15 Aligned_cols=126 Identities=21% Similarity=0.349 Sum_probs=64.4
Q ss_pred EEEEEECCC--CHHHHHHHHHHCCCE-EEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHHCC
Q ss_conf 899875456--869999999987999-99942768999988-995179465348816519--855323715553553308
Q gi|254780664|r 19 ALISVHNKT--GVVEFASRLLSRGIK-IISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILSIR 92 (536)
Q Consensus 19 ALiSV~dKt--gl~~la~~L~~~g~~-iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~~r 92 (536)
T Consensus 9 ~~i~v~~~~l~~av~~a~~~~~~g~dvIIsRGgta~~ir~~~~iPVv~I~-~s~~D-il~al~~a~~~~~ki--avvg~~ 84 (169)
T pfam06506 9 ADVEVVDGGLEDAVEVARALVAEGVDVIISRGGTAAYLRDRLSVPVVEIK-VSGFD-LLRALARARRYGGRI--GLVGYE 84 (169)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEEE-CCHHH-HHHHHHHHHHHCCCE--EEEECC
T ss_conf 72799977789999999999977995999896589999985899889982-78869-999999999758979--999276
Q ss_pred CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCH-HHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 8989999999779984149999488889973176531-1232002334346999874015
Q gi|254780664|r 93 DNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDY-YTMVENIDIGGPSMIRAAAKNH 151 (536)
Q Consensus 93 ~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~-~~~IEnIDIGGpsmiRAAAKN~ 151 (536)
T Consensus 85 ~~~~~~~~~~~i--l~~~i~~~~~~~~~e~~~~i~~l~~~G~-~vvVG~~~~~~~A~~~G 141 (169)
T pfam06506 85 NIIPGLKALSEL--LGLDIVQRAYQSEEEARAAVKELKAQGI-KVIVGDGLVCDLAEQAG 141 (169)
T ss_pred CCCHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHCCC-EEEECCCHHHHHHHHCC
T ss_conf 303689999999--6993599996688999999999998699-59985828999999839