HHsearch alignment of GI: 254780664 and MMDB domain: 2yvq_A_

>2yvq_A (A:) Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=99.17  E-value=1.1e-13  Score=119.50  Aligned_cols=124  Identities=23%  Similarity=0.254  Sum_probs=95.5

Q ss_pred             CCCCCCCEEEEEEEEEC--CCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHH
Q ss_conf             88677613698998754--5686999999998799999942768999988995179465348816519855323715553
Q gi|254780664|r    9 GDHGEIAVKTALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYG   86 (536)
Q Consensus         9 ~~~~~~~ikrALiSV~d--Ktgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~g   86 (536)
                      ....++|-+..|+||+|  |+.+.++++.|+++||+|++|+||+++|+++|+++..|..  .+++..+|++++||+.|..
T Consensus        17 ~~~~~lp~~gvlisv~d~~K~~l~~~a~~l~~~G~~i~AT~gT~~~l~~~Gi~~~~v~~--~~~~~~~~~~~~i~~~i~~   94 (143)
T 2yvq_A           17 STGFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAW--PSQEGQNPSLSSIRKLIRD   94 (143)
T ss_dssp             SCSCCCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECC--GGGC-----CBCHHHHHHT
T ss_pred             HCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCCCHHHHHHH
T ss_conf             75999899878999863444568899999975071467438989999854588669843--0236766674338889870


Q ss_pred             HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHH
Q ss_conf             55330889899999997799841499994888899731765311232002334346999874015631353089998988
Q gi|254780664|r   87 GILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLF  166 (536)
Q Consensus        87 gIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~  166 (536)
                      |.                    ||+|+-.-..       ..       .-.--|-.|.|+|..|  +|..+|+++-=..+
T Consensus        95 g~--------------------i~~Vin~~~~-------~~-------~~~~d~~~iRr~av~~--~iP~~T~~~tA~~~  138 (143)
T 2yvq_A           95 GS--------------------IDLVINLPNN-------NT-------KFVHDNYVIRRTAVDS--GIPLLTNFQVTKLF  138 (143)
T ss_dssp             TS--------------------CCEEEECCCC-------CG-------GGHHHHHHHHHHHHHT--TCCEECSHHHHHHH
T ss_pred             CC--------------------EEEEEECCCC-------CC-------CCCCCHHHHHHHHHHC--CCCEEECHHHHHHH
T ss_conf             72--------------------4799978889-------86-------6556579999999976--99988589999999


Q ss_pred             HHHH
Q ss_conf             9875
Q gi|254780664|r  167 LAEM  170 (536)
Q Consensus       167 ~~el  170 (536)
                      ++.|
T Consensus       139 ~~~l  142 (143)
T 2yvq_A          139 AEAV  142 (143)
T ss_dssp             HHTC
T ss_pred             HHHH
T ss_conf             9975