Query gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 536 No_of_seqs 170 out of 2250 Neff 4.9 Searched_HMMs 33803 Date Wed Jun 1 15:02:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780664.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1g8m_A Aicar transformylase-I 100.0 0 0 418.8 20.5 196 13-209 2-199 (200) 2 >1zcz_A Bifunctional purine bi 100.0 0 0 404.2 16.5 128 400-536 2-129 (129) 3 >1g8m_A Aicar transformylase-I 100.0 0 0 391.7 15.5 191 315-536 1-196 (196) 4 >1zcz_A Bifunctional purine bi 100.0 0 0 396.9 7.7 132 228-370 1-132 (133) 5 >1g8m_A Aicar transformylase-I 100.0 1.4E-45 0 352.6 5.6 124 250-374 3-147 (147) 6 >1zcz_A Bifunctional purine bi 100.0 9.5E-29 2.8E-33 229.1 16.5 169 11-214 8-176 (182) 7 >1g8m_A Aicar transformylase-I 99.5 1.8E-18 5.4E-23 154.3 -15.2 108 404-522 8-115 (196) 8 >1a9x_A Carbamoyl phosphate sy 99.4 1E-13 3E-18 119.8 3.9 94 16-109 4-103 (120) 9 >2yvq_A Carbamoyl-phosphate sy 99.2 1.1E-13 3.3E-18 119.5 -7.0 124 9-170 17-142 (143) 10 >1wo8_A Methylglyoxal synthase 98.7 3.5E-08 1E-12 79.6 7.1 117 16-172 1-122 (126) 11 >1b93_A Protein (methylglyoxal 98.4 8.1E-07 2.4E-11 69.7 7.6 114 17-170 1-119 (120) 12 >1vmd_A MGS, methylglyoxal syn 98.3 2.1E-06 6.1E-11 66.7 6.7 114 17-170 1-119 (120) 13 >1itu_A Renal dipeptidase; gly 93.1 0.76 2.3E-05 26.2 9.0 186 95-327 49-252 (369) 14 >3ff4_A Uncharacterized protei 87.3 1.2 3.4E-05 24.9 4.9 38 489-528 72-110 (122) 15 >1ko7_A HPR kinase/phosphatase 86.3 0.8 2.4E-05 26.1 3.6 46 489-534 70-115 (129) 16 >2q5c_A NTRC family transcript 85.4 1.1 3.2E-05 25.2 3.9 40 25-64 37-77 (106) 17 >3dmy_A Protein FDRA; predicte 85.0 0.73 2.1E-05 26.4 2.9 39 489-527 50-90 (132) 18 >1y81_A Conserved hypothetical 84.3 1.4 4.2E-05 24.3 4.1 39 488-528 82-121 (138) 19 >2d59_A Hypothetical protein P 82.8 1.9 5.6E-05 23.4 4.2 40 489-530 91-131 (144) 20 >2duw_A Putative COA-binding p 82.6 1.4 4E-05 24.4 3.4 38 489-528 84-122 (145) 21 >2ioj_A Hypothetical protein A 80.0 1.3 3.9E-05 24.5 2.6 46 489-534 63-109 (139) 22 >1vq2_A DCMP deaminase, deoxyc 79.1 4.8 0.00014 20.4 5.8 102 418-526 7-115 (137) 23 >1iuk_A Hypothetical protein T 73.4 4.5 0.00013 20.6 3.9 38 489-528 84-122 (140) 24 >2isb_A Fumarase, FUM-1; NP_06 71.8 4.6 0.00014 20.6 3.6 36 493-530 105-140 (192) 25 >3l6u_A ABC-type sugar transpo 71.8 7.2 0.00021 19.1 5.3 45 488-532 53-98 (155) 26 >2csu_A 457AA long hypothetica 71.6 4.6 0.00014 20.6 3.5 39 489-527 78-125 (126) 27 >3kg2_A Glutamate receptor 2; 71.0 7.5 0.00022 19.0 6.8 41 491-531 52-92 (190) 28 >3gbv_A Putative LACI-family t 64.6 9.9 0.00029 18.1 4.3 40 491-530 61-101 (167) 29 >2wjw_A Glutamate receptor 2; 60.3 12 0.00035 17.6 4.8 68 300-369 14-91 (207) 30 >1wcw_A Uroporphyrinogen III s 59.5 7.1 0.00021 19.2 2.6 86 23-111 18-113 (114) 31 >3h6g_A Glutamate receptor, io 58.3 12 0.00035 17.6 3.5 72 294-367 14-100 (195) 32 >1u83_A Phosphosulfolactate sy 57.4 13 0.00038 17.3 4.6 21 300-320 80-100 (276) 33 >1vem_A Beta-amylase; beta-alp 55.9 8.2 0.00024 18.7 2.4 14 96-109 33-46 (416) 34 >8abp_A L-arabinose-binding pr 55.8 14 0.00041 17.1 5.5 45 488-532 46-91 (138) 35 >3h4t_A Glycosyltransferase GT 55.1 14 0.00042 17.0 6.7 110 28-161 16-127 (244) 36 >2w4l_A DCMP deaminse, deoxycy 55.0 14 0.00042 17.0 3.7 99 418-525 17-148 (178) 37 >1zmt_A Haloalcohol dehalogena 54.1 10 0.0003 18.1 2.6 121 16-158 1-131 (254) 38 >1jr2_A Uroporphyrinogen-III s 53.9 15 0.00044 16.9 3.9 44 327-370 63-109 (139) 39 >3iv4_A Putative oxidoreductas 53.8 8.6 0.00025 18.6 2.2 51 283-335 25-75 (112) 40 >2dri_A D-ribose-binding prote 53.8 15 0.00044 16.9 4.0 40 492-531 50-90 (139) 41 >2vrq_A Alpha-L-arabinofuranos 52.3 16 0.00046 16.7 4.4 32 92-123 31-65 (357) 42 >3brs_A Periplasmic binding pr 50.7 16 0.00049 16.5 3.8 41 491-531 57-98 (156) 43 >1knx_A Probable HPR(Ser) kina 49.9 17 0.0005 16.5 3.7 41 253-294 54-95 (119) 44 >2vk2_A YTFQ, ABC transporter 49.3 17 0.00051 16.4 5.0 43 490-532 49-92 (134) 45 >2uuu_A Alkyldihydroxyacetonep 47.6 16 0.00047 16.6 2.8 32 501-532 63-94 (117) 46 >1tg7_A Beta-galactosidase; TI 46.5 19 0.00056 16.1 3.3 23 91-113 35-57 (356) 47 >3l49_A ABC sugar (ribose) tra 46.4 19 0.00056 16.1 4.1 41 491-531 53-94 (150) 48 >3dnf_A ISPH, LYTB, 4-hydroxy- 46.4 7.2 0.00021 19.2 0.9 33 71-111 18-50 (86) 49 >3ke8_A 4-hydroxy-3-methylbut- 45.9 7.3 0.00021 19.1 0.8 30 73-110 19-48 (86) 50 >1qpz_A PURA, protein (purine 45.7 19 0.00057 16.0 3.9 38 492-529 50-87 (151) 51 >2yv2_A Succinyl-COA synthetas 44.9 20 0.00059 15.9 3.8 38 490-527 86-126 (129) 52 >3d8t_A Uroporphyrinogen-III s 44.7 20 0.00059 15.9 3.2 42 25-66 21-72 (116) 53 >1dp4_A Atrial natriuretic pep 44.0 21 0.00061 15.8 3.4 27 341-367 78-106 (203) 54 >1iir_A Glycosyltransferase GT 42.5 22 0.00064 15.7 5.4 39 28-66 16-56 (254) 55 >2nx8_A TRNA-specific adenosin 42.1 22 0.00065 15.6 3.4 85 416-505 22-112 (179) 56 >1sjp_A Chaperonin60, 60 kDa c 41.1 12 0.00035 17.6 1.3 99 343-462 57-161 (182) 57 >2c07_A 3-oxoacyl-(acyl-carrie 41.1 15 0.00045 16.8 1.9 130 11-163 39-184 (285) 58 >1ng7_A Poliovirus 3A-N, genom 41.0 8.1 0.00024 18.8 0.5 18 509-526 28-45 (60) 59 >2i33_A Acid phosphatase; HAD 40.4 20 0.00059 15.9 2.4 26 179-204 16-41 (217) 60 >3i45_A Twin-arginine transloc 39.3 24 0.00071 15.3 3.6 70 296-367 18-102 (187) 61 >2rbg_A Putative uncharacteriz 38.9 24 0.00072 15.3 3.4 42 97-140 24-65 (126) 62 >1pea_A Amidase operon; gene r 38.8 25 0.00073 15.3 4.1 91 295-387 20-124 (206) 63 >1j5w_A Glycyl-tRNA synthetase 35.7 16 0.00047 16.6 1.3 20 221-240 69-88 (199) 64 >3fuy_A HFX_CASS1, putative in 35.7 9.8 0.00029 18.2 0.2 60 430-491 105-173 (179) 65 >1e8g_A Vanillyl-alcohol oxida 35.6 26 0.00078 15.0 2.4 12 516-527 87-98 (126) 66 >3g1w_A Sugar ABC transporter; 35.5 27 0.00081 14.9 5.2 33 339-371 61-95 (171) 67 >2hxv_A Diaminohydroxyphosphor 35.1 28 0.00082 14.9 4.7 74 431-505 38-112 (154) 68 >1kid_A Groel (HSP60 class); c 34.7 18 0.00053 16.3 1.4 101 343-464 75-181 (203) 69 >2c4n_A Protein NAGD; nucleoti 34.5 22 0.00064 15.7 1.8 47 27-73 22-76 (144) 70 >1jdp_A NPR-C, atrial natriure 34.5 28 0.00084 14.8 2.4 33 336-368 80-114 (209) 71 >2c7f_A Alpha-L-arabinofuranos 33.2 30 0.00088 14.7 4.9 30 94-123 32-64 (366) 72 >2iyf_A OLED, oleandomycin gly 33.1 30 0.00088 14.7 7.5 104 16-121 8-117 (267) 73 >3gg7_A Uncharacterized metall 33.0 30 0.00089 14.6 3.4 50 319-368 143-194 (254) 74 >3i09_A Periplasmic branched-c 32.9 30 0.00089 14.6 3.3 60 299-358 22-89 (184) 75 >1kp8_A Groel protein; chapero 32.8 18 0.00054 16.2 1.2 101 343-464 59-165 (185) 76 >1ve4_A ATP phosphoribosyltran 32.5 18 0.00053 16.2 1.1 21 38-61 58-78 (86) 77 >2wvv_A Alpha-L-fucosidase; al 32.1 31 0.00092 14.5 4.3 19 440-458 313-331 (351) 78 >1nff_A Putative oxidoreductas 31.6 32 0.00093 14.5 4.2 128 12-162 3-143 (260) 79 >3kl7_A Putative metal-depende 30.6 29 0.00085 14.8 1.9 58 2-59 52-110 (111) 80 >1rrv_A Glycosyltransferase GT 30.5 33 0.00097 14.4 4.5 40 27-66 15-56 (257) 81 >1h3d_A ATP-phosphoribosyltran 30.5 16 0.00047 16.6 0.6 13 345-357 27-39 (93) 82 >1mio_B Nitrogenase molybdenum 30.0 33 0.00099 14.3 4.7 66 17-84 4-79 (109) 83 >2dgd_A 223AA long hypothetica 30.0 33 0.00099 14.3 2.5 32 17-48 3-34 (95) 84 >1bqc_A Protein (beta-mannanas 29.9 34 0.00099 14.3 4.5 23 95-117 35-57 (302) 85 >2d2r_A Undecaprenyl pyrophosp 29.9 30 0.00089 14.6 1.9 67 320-395 137-209 (245) 86 >1h70_A NG, NG-dimethylarginin 29.1 34 0.001 14.2 3.8 29 17-45 11-42 (49) 87 >1usg_A Leucine-specific bindi 28.8 35 0.001 14.2 6.7 25 334-358 63-87 (196) 88 >1zr6_A Glucooligosaccharide o 28.7 35 0.001 14.1 2.6 17 515-531 58-74 (95) 89 >3jyv_I 40S ribosomal protein 28.6 35 0.001 14.1 2.4 22 443-464 64-85 (138) 90 >2h3h_A Sugar ABC transporter, 28.2 36 0.0011 14.1 5.2 43 490-532 48-91 (147) 91 >3e2d_A Alkaline phosphatase; 28.0 29 0.00086 14.7 1.6 12 352-363 38-49 (88) 92 >2d1y_A Hypothetical protein T 27.9 36 0.0011 14.1 3.5 115 13-151 3-123 (256) 93 >1g57_A DHBP synthase, 3,4-dih 27.5 37 0.0011 14.0 3.9 24 505-528 178-201 (217) 94 >1f06_A MESO-diaminopimelate D 27.2 37 0.0011 14.0 2.2 13 143-155 74-86 (154) 95 >1prx_A HORF6; peroxiredoxin, 27.1 37 0.0011 14.0 2.3 18 342-359 8-26 (46) 96 >2vd3_A ATP phosphoribosyltran 27.0 23 0.00068 15.5 0.9 27 343-369 26-53 (94) 97 >2p6p_A Glycosyl transferase; 27.0 37 0.0011 13.9 4.5 40 28-67 16-57 (217) 98 >3epr_A Hydrolase, haloacid de 27.0 10 0.00031 18.0 -0.9 14 30-43 27-40 (154) 99 >2o2s_A Enoyl-acyl carrier red 26.7 38 0.0011 13.9 5.4 135 13-147 6-161 (315) 100 >1wvf_A 4-cresol dehydrogenase 26.6 38 0.0011 13.9 2.6 27 502-528 59-85 (112) 101 >1iok_A Chaperonin 60; chapero 26.6 17 0.00049 16.5 0.1 100 343-463 56-161 (182) 102 >2hx1_A Predicted sugar phosph 26.5 38 0.0011 13.9 2.6 15 492-506 117-131 (162) 103 >2ag5_A DHRS6, dehydrogenase/r 26.0 39 0.0011 13.8 2.0 111 13-149 3-118 (246) 104 >1srv_A Protein (groel (HSP60 25.8 36 0.0011 14.1 1.7 50 343-392 57-112 (145) 105 >3i45_A Twin-arginine transloc 25.7 39 0.0012 13.8 3.6 87 266-359 5-94 (200) 106 >3h5l_A Putative branched-chai 25.6 39 0.0012 13.8 7.6 11 225-235 212-222 (237) 107 >1gud_A ALBP, D-allose-binding 25.3 40 0.0012 13.7 4.9 11 516-526 77-87 (153) 108 >1kon_A Protein YEBC, YEBC; al 25.3 33 0.00099 14.3 1.5 35 143-177 25-64 (75) 109 >1nh8_A ATP phosphoribosyltran 25.3 25 0.00073 15.2 0.8 26 343-368 24-50 (93) 110 >2b4q_A Rhamnolipids biosynthe 24.9 41 0.0012 13.7 2.8 123 14-151 27-152 (276) 111 >2gv9_A DNA polymerase; polyme 24.8 41 0.0012 13.7 1.8 41 293-333 15-55 (91) 112 >1pzm_A HGPRT, hypoxanthine-gu 24.6 31 0.00092 14.5 1.2 11 288-298 123-133 (146) 113 >3ec3_A Protein disulfide-isom 24.5 41 0.0012 13.6 2.1 30 143-172 43-73 (135) 114 >1xsz_A Guanine nucleotide exc 24.1 39 0.0012 13.8 1.6 18 342-359 98-115 (159) 115 >1k07_A FEZ-1 beta-lactamase; 23.7 41 0.0012 13.7 1.7 10 284-293 65-74 (129) 116 >3i1m_I 30S ribosomal protein 23.7 29 0.00086 14.8 0.9 23 443-465 67-89 (130) 117 >3lmz_A Putative sugar isomera 23.5 43 0.0013 13.5 3.2 58 11-68 13-85 (257) 118 >1we3_A CPN60(groel); chaperon 23.5 40 0.0012 13.7 1.6 50 342-391 56-111 (146) 119 >2eyq_A TRCF, transcription-re 23.4 25 0.00073 15.3 0.5 61 27-90 16-83 (103) 120 >1vqu_A Anthranilate phosphori 23.4 43 0.0013 13.5 2.6 30 13-42 5-34 (79) 121 >3ftp_A 3-oxoacyl-[acyl-carrie 23.3 43 0.0013 13.5 3.4 160 11-197 23-194 (270) 122 >1qox_A Beta-glucosidase; hydr 23.2 44 0.0013 13.5 3.0 19 94-112 60-78 (449) 123 >1geg_A Acetoin reductase; SDR 23.1 44 0.0013 13.4 4.2 151 17-198 3-170 (256) 124 >3c1d_A Protein ORAA, regulato 23.1 35 0.001 14.1 1.2 35 167-202 12-55 (61) 125 >2v6e_A Protelemorase; hairpin 22.9 44 0.0013 13.4 2.3 41 155-195 2-42 (125) 126 >2z04_A Phosphoribosylaminoimi 22.8 12 0.00037 17.4 -1.1 69 92-173 11-82 (91) 127 >1lfp_A Hypothetical protein A 22.8 44 0.0013 13.4 2.0 26 152-177 40-65 (76) 128 >2fnu_A Aminotransferase; prot 22.7 40 0.0012 13.8 1.4 23 283-307 113-135 (238) 129 >1g8f_A Sulfate adenylyltransf 22.7 41 0.0012 13.6 1.5 70 96-192 10-80 (223) 130 >1pbj_A Hypothetical protein; 22.7 45 0.0013 13.4 1.8 27 418-444 17-43 (58) 131 >2qw5_A Xylose isomerase-like 22.5 45 0.0013 13.4 4.5 17 28-44 32-48 (335) 132 >2ioy_A Periplasmic sugar-bind 22.5 45 0.0013 13.4 5.3 38 492-529 50-88 (150) 133 >1u0q_A Immunoglobulin heavy c 22.5 28 0.00081 14.9 0.6 11 262-272 84-94 (125) 134 >2qk4_A Trifunctional purine b 22.4 30 0.00087 14.7 0.7 69 92-172 7-78 (94) 135 >3cny_A Inositol catabolism pr 22.1 46 0.0014 13.3 3.3 71 26-109 30-107 (301) 136 >3gnh_A L-lysine, L-arginine c 22.1 46 0.0014 13.3 4.4 40 488-529 78-117 (118) 137 >2a8n_A Cytidine and deoxycyti 21.1 48 0.0014 13.2 3.3 82 419-505 13-100 (144) 138 >1yew_A Particulate methane mo 21.1 40 0.0012 13.7 1.2 19 309-327 117-135 (153) 139 >1mw7_A Hypothetical protein H 21.1 45 0.0013 13.4 1.5 23 152-174 45-67 (83) 140 >3d02_A Putative LACI-type tra 20.6 49 0.0014 13.1 4.4 15 513-527 76-90 (154) 141 >2jg6_A DNA-3-methyladenine gl 20.6 44 0.0013 13.4 1.3 30 30-59 22-51 (65) No 1 >>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} (A:1-200) Probab=100.00 E-value=0 Score=418.83 Aligned_cols=196 Identities=39% Similarity=0.642 Sum_probs=186.2 Q ss_pred CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC Q ss_conf 76136989987545686999999998799999942768999988995179465348816519855323715553553308 Q gi|254780664|r 13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR 92 (536) Q Consensus 13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r 92 (536) ..|.+++||||+||++++++|+.|+++||+|+||+||+++|+++||+|+.|+++|+|||+++||||||||.+||||++++ T Consensus 2 kp~~~~vLiSV~DK~~l~~~ak~L~~~G~~I~AT~GTa~~L~e~GI~v~~V~~~t~~~e~~~gr~~tl~~~~~g~I~~vi 81 (200) T 1g8m_A 2 AARQQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEXLGGRVKTLHPAVHAGILARN 81 (200) T ss_dssp --CCCEEEEEESCCTTHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEHHHHHSCCCBGGGTBSSCSHHHHHHHHCCS T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEHHHCCCCHHHHCCCCCCCCCHHHHHHHCCC T ss_conf 85455799998644588999999998898899772799999987996788775049726529825657734417660599 Q ss_pred CCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH Q ss_conf 89899999997799841499994888899731765-31123200233434699987401563135308999898898753 Q gi|254780664|r 93 DNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMD 171 (536) Q Consensus 93 ~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~ 171 (536) + ..|..++.++|+..+|+||+|+|||..++.... ..++++|+||||||+|+|++||||++|++++||.||..+++|+. T Consensus 82 N-~~~~~~~~~~g~~irr~av~~~iP~~Tti~~a~a~~~~~~~~~di~~~s~~r~~akn~~~v~~~~dp~dy~~~~~e~~ 160 (200) T 1g8m_A 82 I-PEDNADXNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEXA 160 (200) T ss_dssp S-HHHHHHHHHTTCCCEEEEEEECCCHHHHHTSTTCCHHHHHTTCCSHHHHHHHHHHHTTTTCEEECCGGGHHHHHHHHH T ss_pred C-HHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH T ss_conf 8-778999997699983579981877699972689988999886246768999998754687089925889999998776 Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf -02345666788999999999874228999987533101 Q gi|254780664|r 172 -VNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAES 209 (536) Q Consensus 172 -~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~ 209 (536) .++|.+++++|++||.|||++||.||++|++||+++.. T Consensus 161 ~~~~~~~~~~~r~~lA~kaf~~t~~yd~~i~~~~~~~~~ 199 (200) T 1g8m_A 161 ASKDKDTSVETRRHLALKAFTHTAQYDAAISDYFRKEYS 199 (200) T ss_dssp TSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 515677899999999999999999989999997554102 No 2 >>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} (A:336-464) Probab=100.00 E-value=0 Score=404.16 Aligned_cols=128 Identities=45% Similarity=0.692 Sum_probs=125.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 00012467778688988899999986005667799996893899729688889999999999876420012222348709 Q gi|254780664|r 400 KELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSV 479 (536) Q Consensus 400 ~~~~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~v 479 (536) ++|++||+++|+++|++||.|||+|+||+|||||+++++++++|||+||||||+|+++|++||++ +++|+| T Consensus 2 ~~~~vvt~~~p~~~~~~dl~Fa~~v~k~~kSNAI~~~~~g~~~gig~Gq~srv~~~~~a~~~a~~---------~l~g~v 72 (129) T 1zcz_A 2 GNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGE---------KAKGAV 72 (129) T ss_dssp SCCEEEESCCCCHHHHHHHHHHHHHHHHSCSSCEEEEETTEEEEEECSCSSHHHHHHHHHHHHGG---------GGTTCE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHH---------HCCCEE T ss_conf 20001347898666667699999999767867579963993897688966779999999998510---------217879 Q ss_pred EEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 997366868555899997199599938987798899999987597799747854479 Q gi|254780664|r 480 IASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536 (536) Q Consensus 480 laSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H 536 (536) |||||||||+|+|+.|+++||++|+|||||+||+|||++||||||+|+|||.|||+| T Consensus 73 laSDAFFPF~D~v~~A~~~GV~~IiqPgGSirD~evI~aane~gi~mvfTg~R~F~H 129 (129) T 1zcz_A 73 AASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVFRH 129 (129) T ss_dssp EEESSCCSSHHHHHHHHHTTCCEEEECCCCTTHHHHHHHHHHHTCEEEECSSCCCCC T ss_pred EEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC T ss_conf 994568787558999998399499979874361999999997598899868866178 No 3 >>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} (A:398-593) Probab=100.00 E-value=0 Score=391.73 Aligned_cols=191 Identities=20% Similarity=0.233 Sum_probs=149.6 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCC Q ss_conf 13200455542754214578788654311112687989998851245531563167667776664020321022310123 Q gi|254780664|r 315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRD 394 (536) Q Consensus 315 ~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~D 394 (536) .|.||+||+.|++.+++.++.| ++ |+++++.+||.||+..+.. ..+.+|.+.|.+. T Consensus 1 ks~F~~vVv~~r~~teee~~dL---~f-----------A~~vlk~~Ksn~I~~~k~~----------~~vg~G~gQ~sRv 56 (196) T 1g8m_A 1 RSLFKNIVTKNKTLPESAVRDL---IV-----------ASIAVKYTQSNSVCYAKDG----------QVIGIGAGQQSRI 56 (196) T ss_dssp GGGGCCBCSSSCCCCHHHHHHH---HH-----------HHHHHHTSCSSCEEEEETT----------EEEEEECSCSCHH T ss_pred HHHHHHHHCCCCCCCHHHHHHH---HH-----------HHHHHCCCCCCEEEEEECC----------EEEEECCCCCCHH T ss_conf 7875421134668978889899---99-----------9997255777579998499----------7997678876567 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE-----ECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 345310001246777868898889999998600566779999-----689389972968888999999999987642001 Q gi|254780664|r 395 NVVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYA-----KDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQA 469 (536) Q Consensus 395 ~~~~~~~~~vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~a-----k~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~ 469 (536) .......++.+|++.|+.+++.+|.|+|+|+||+|||||+++ ++++++|+|+||+|||+++++|.+|+.. T Consensus 57 d~~~~a~~Ka~t~~~~t~~~~a~l~Fa~~V~k~~kSNAivi~~~gs~~D~~~ig~g~g~~~r~~~~~~~~~~~~~----- 131 (196) T 1g8m_A 57 HCTRLAGDKANSWWLRHHPRVLSXKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAXFEEVPAQLTEAEKKQW----- 131 (196) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCCCHHHHHHH----- T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH----- T ss_conf 899999999988765216022100001220034433235553034422101334433201235421015666655----- Q ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 2222348709997366868555899997199599938987798899999987597799747854479 Q gi|254780664|r 470 DVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536 (536) Q Consensus 470 ~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF~H 536 (536) ...++|+|||||||||||||||.|+++||+|||||||||||+|||++|||+||+|+|||.||||| T Consensus 132 --~~~~~g~v~aSDaFFPF~D~i~~a~~~Gv~aiiqPGGS~rD~~vi~a~~~~gi~m~ftg~RhF~H 196 (196) T 1g8m_A 132 --IAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 196 (196) T ss_dssp --HTTCCCEEEEESSCCSSTHHHHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC T ss_pred --HHCCCCCEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC T ss_conf --41247857980147787548999998399099879874366999999997298899868876387 No 4 >>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} (A:183-315) Probab=100.00 E-value=0 Score=396.89 Aligned_cols=132 Identities=44% Similarity=0.763 Sum_probs=124.1 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHH Q ss_conf 67881006505760477668210121058988831222120011677642455672799961568656545201689999 Q gi|254780664|r 228 YGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYR 307 (536) Q Consensus 228 YGENPHQ~Aa~Y~~~~~~~~~~~~~ql~GKeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~ 307 (536) |||||||+|++|... ..++|||||+||||||+|+|+||++|+||.+ |+||||||+||||+|+++++.+||+ T Consensus 1 YGENPHQ~aa~Y~~~------~~~~ql~GKelSynNllD~~~A~~lv~ef~~---paavivKH~nPCGvA~~~~~~~Ay~ 71 (133) T 1zcz_A 1 YGENPHEKAFVYGKP------AFEILHEGKTISFNNILDAENAWFMAKNLPR---MGAVVVKHQSPCGAAIGEDKVEIVK 71 (133) T ss_dssp CSSSTTSCEEEESCC------SEEEECSSSCCCHHHHHHHHHHHHHHHTCSS---SEEEEEETTEEEEEEECSCHHHHHH T ss_pred CCCCCCCCCEEEECC------CEEEECCCCCCCCCCCCCCHHHHHCCHHHHC---CCEEEEECCCCCCCCHHCCCHHHHH T ss_conf 677714375799504------2004514777450223231033311000000---3314541256434420014127799 Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCC Q ss_conf 998533213200455542754214578788654311112687989998851245531563167 Q gi|254780664|r 308 RALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSS 370 (536) Q Consensus 308 ~A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~ 370 (536) +||+|||+||||||||+|++||.++|+.| +.|+||||||+|++||||+|++ ||+|+|+++. T Consensus 72 ~A~~~Dp~SaFGgiva~N~~vd~~~A~~i-~~F~EviiAP~~~~eAleiL~k-KnlRil~~~~ 132 (133) T 1zcz_A 72 KAIEADDESSFGGILAVNFEMDEEVAKSL-KKYLEVIVAPSFTQEAIEVLSK-KKVRLLKPGD 132 (133) T ss_dssp HHHHHTTTTTTTEEEEESSCBCHHHHHHC-CSCEEEEECSCBCHHHHHHHTT-SSCEEEEECC T ss_pred HHHHHCCHHCCCEEEEECCCHHHHHHHHH-HHCEEEEEECCCCHHHHHHHHH-CCCHHHCCCC T ss_conf 99976322004624543563036899997-5340899965865677888731-5520102332 No 5 >>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} (A:226-372) Probab=100.00 E-value=1.4e-45 Score=352.55 Aligned_cols=124 Identities=29% Similarity=0.454 Sum_probs=116.2 Q ss_pred CHHHCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCEEEEECCCCCCCCCCCC--------------------HHHHHHHH Q ss_conf 012105898883122212001167764245-567279996156865654520--------------------16899999 Q gi|254780664|r 250 HAVLVQGKPLSYNNINDLDAAFELVSEFRS-QDCAACVIVKHMNPCGVATAD--------------------TLVEAYRR 308 (536) Q Consensus 250 ~~~ql~GKeLSYNNllD~daA~~lv~ef~~-~~~Pa~vIvKH~NPCGvA~~~--------------------~~~~Ay~~ 308 (536) +++|||||+ |||||+|+|+||++|+||.+ .+.|+||||||+||||+|+++ ++.+||++ T Consensus 3 ~~~qL~GK~-SyNNllD~daA~~~v~ef~~~~~~Pa~~ivKH~nPCG~A~~~~~~e~~~~~~~~~~~~~s~~~l~~Ay~~ 81 (147) T 1g8m_A 3 PLTVVNGSP-GFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCXVHDLHKTLTPLASAYAR 81 (147) T ss_dssp SEEEEESCC-CHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCCCHHHHHHTTCTTTGGGCCHHHHHHHH T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHH T ss_conf 167665031-3323543699999997531135885589845788630012653022321000122212355659999999 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCEEEECCCCCCC Q ss_conf 985332132004555427542145787886543111126879899988512455315631676677 Q gi|254780664|r 309 ALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF 374 (536) Q Consensus 309 A~~~DP~SAFGGIIa~N~~vd~~~A~~I~~~F~EvIiAP~f~~eAleiL~~KKnlRil~~~~~~~~ 374 (536) ||+|||+||||||||+|++||.++|++|.+.|+||||||+|++|||+||++|||+|+|++..+.+| T Consensus 82 A~~~Dp~SaFGGIia~Nr~vD~~~A~~i~~~F~EvIiAP~f~~eAleiL~~KKnlRll~~~~~~n~ 147 (147) T 1g8m_A 82 SRGADRXSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCVLQXDPNY 147 (147) T ss_dssp HHHSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGGGTCEEEEECTTC T ss_pred HHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCCHHHHCCCCCC T ss_conf 971696000363898547426879998650225563169989899999872455202231033456 No 6 >>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} (A:1-182) Probab=99.96 E-value=9.5e-29 Score=229.07 Aligned_cols=169 Identities=34% Similarity=0.506 Sum_probs=154.0 Q ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 67761369899875456869999999987999999427689999889951794653488165198553237155535533 Q gi|254780664|r 11 HGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 11 ~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) +-..|.+++||||+||..++++|+.|.++||+|++|+||+++|+++||+|+.|+.++.++|+++|++||+||+|+..|.+ T Consensus 8 g~~~~~g~VliSv~DK~~~~~~ak~L~~lGf~i~AT~GTa~~L~~~GI~~~~v~ki~e~~~~~~~~~~~~~P~i~d~I~~ 87 (182) T 1zcz_A 8 HHHHHMKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGILG 87 (182) T ss_dssp -----CCEEEEECSSTGGGHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEGGGGSCCCCGGGGTTTTCCHHHHHHHHS T ss_pred CCHHHCCEEEEEEECCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEHHHCCCCCHHHCCCCCCCCCHHHHHHCC T ss_conf 02234067999998676989999999988989997706899999779966887761498077588135578344165437 Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH Q ss_conf 08898999999977998414999948888997317653112320023343469998740156313530899989889875 Q gi|254780664|r 91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEM 170 (536) Q Consensus 91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el 170 (536) +|+. .+.+|||+++++ +.++++..+||.+|++|++|.++|+++.|..+++.| T Consensus 88 ~~~~--------------~v~lVINt~~~~--------------~~~~~dg~~IRr~Ai~~~~Vp~~T~~~~a~a~i~al 139 (182) T 1zcz_A 88 PEPR--------------WDVVFVDLYPPP--------------DIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEID 139 (182) T ss_dssp SSCS--------------CSEEEECCCCTT--------------CCCSHHHHHHHHHHHTTTTCEEECSHHHHHHHHHCC T ss_pred CCCC--------------CCEEEECCCCCH--------------HCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHCC T ss_conf 8877--------------675564258904--------------326586078799998548502564001245553011 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 30234566678899999999987422899998753310121134 Q gi|254780664|r 171 DVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPD 214 (536) Q Consensus 171 ~~~~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~ 214 (536) + ...++.++.++|+++.+||.+|++||.++.....++ T Consensus 140 ~-------~~~~~~~~v~~l~~~~~~d~~i~~~~~~~~~~~~~~ 176 (182) T 1zcz_A 140 D-------EETRKYLAGMTFAFTSVYDSIRANQFVEGISLAFKR 176 (182) T ss_dssp C-------HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEE T ss_pred H-------HHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC T ss_conf 2-------789999999753422030344223330233300001 No 7 >>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} (A:398-593) Probab=99.50 E-value=1.8e-18 Score=154.30 Aligned_cols=108 Identities=29% Similarity=0.373 Sum_probs=98.3 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 24677786889888999999860056677999968938997296888899999999998764200122223487099973 Q gi|254780664|r 404 VVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASE 483 (536) Q Consensus 404 vVT~~~pt~~e~~dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~~~~~~~~~~g~vlaSD 483 (536) +|+++.|+++|++||+|||+++||+|||+|+++|+++++|+|+|||||+||+++|.+|+.++.. .+..++ T Consensus 8 Vv~~r~~teee~~dL~fA~~vlk~~Ksn~I~~~k~~~~vg~G~gQ~sRvd~~~~a~~Ka~t~~~----------~t~~~~ 77 (196) T 1g8m_A 8 VTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWL----------RHHPRV 77 (196) T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETTEEEEEECSCSCHHHHHHHHHHHHHHHHH----------TTCHHH T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHH----------HCCCHH T ss_conf 1346689788898999999972557775799984997997678876567899999999988765----------216022 Q ss_pred CCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC Q ss_conf 668685558999971995999389877988999999875 Q gi|254780664|r 484 AFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQH 522 (536) Q Consensus 484 AFFPF~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~ 522 (536) +||||+|.|..+.+.+.. ++|||||+||.+.+..+++. T Consensus 78 a~l~Fa~~V~k~~kSNAi-vi~~~gs~~D~~~ig~g~g~ 115 (196) T 1g8m_A 78 LSXKFKAGVKRAEVSNAI-DQYVTGTIGEDEDLVKWQAX 115 (196) T ss_dssp HTCEECTTCCHHHHHHHH-HHHHHTCSCSTHHHHHHHTT T ss_pred HCCCCCCCCHHHHHHHHH-HHHHCCCCCCCHHHHHHHHH T ss_conf 100001220034433235-55303442210133443320 No 8 >>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:939-1058) Probab=99.42 E-value=1e-13 Score=119.81 Aligned_cols=94 Identities=27% Similarity=0.289 Sum_probs=87.4 Q ss_pred EEEEEEEE--ECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCC----CCCCHHHHHHH Q ss_conf 36989987--5456869999999987999999427689999889951794653488165198553----23715553553 Q gi|254780664|r 16 VKTALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVK----TLHPKIYGGIL 89 (536) Q Consensus 16 ikrALiSV--~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVK----TLHP~I~ggIL 89 (536) .++.|||| +||.+++++++.|.++||+|++|+||+++|+++|++++.|+.+++.++.+.+++| +|++++++|.. T Consensus 4 ~g~ilisv~d~~K~~~~~~a~~l~~~G~~l~AT~gTa~~l~~~gi~~~~v~~~~~~~~~~~~~ik~g~i~lVIn~~~~~~ 83 (120) T 1a9x_A 4 HGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRR 83 (120) T ss_dssp SSEEEEECCGGGGTTHHHHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCCSHH T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCEEEEEECCCCCC T ss_conf 88799996401089999999999986998997369999999769942796266799812999997698369998999987 Q ss_pred HCCCCHHHHHHHHHCCCCCE Q ss_conf 30889899999997799841 Q gi|254780664|r 90 SIRDNPAHMKFMQDHELESI 109 (536) Q Consensus 90 ~~r~~~~~~~~l~~~~i~~I 109 (536) ++++........-+++|+-+ T Consensus 84 ~~~~g~~iRr~av~~~IP~~ 103 (120) T 1a9x_A 84 AIEDSRVIRRSALQYKVHYD 103 (120) T ss_dssp HHHHTHHHHHHHHHTTCEEE T ss_pred CCCCHHHHHHHHHHHCCCEE T ss_conf 66754999999997099999 No 9 >>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} (A:) Probab=99.17 E-value=1.1e-13 Score=119.50 Aligned_cols=124 Identities=23% Similarity=0.254 Sum_probs=95.5 Q ss_pred CCCCCCCEEEEEEEEEC--CCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHH Q ss_conf 88677613698998754--5686999999998799999942768999988995179465348816519855323715553 Q gi|254780664|r 9 GDHGEIAVKTALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYG 86 (536) Q Consensus 9 ~~~~~~~ikrALiSV~d--Ktgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~g 86 (536) ....++|-+..|+||+| |+.+.++++.|+++||+|++|+||+++|+++|+++..|.. .+++..+|++++||+.|.. T Consensus 17 ~~~~~lp~~gvlisv~d~~K~~l~~~a~~l~~~G~~i~AT~gT~~~l~~~Gi~~~~v~~--~~~~~~~~~~~~i~~~i~~ 94 (143) T 2yvq_A 17 STGFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAW--PSQEGQNPSLSSIRKLIRD 94 (143) T ss_dssp SCSCCCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECC--GGGC-----CBCHHHHHHT T ss_pred HCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCCCHHHHHHH T ss_conf 75999899878999863444568899999975071467438989999854588669843--0236766674338889870 Q ss_pred HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHH Q ss_conf 55330889899999997799841499994888899731765311232002334346999874015631353089998988 Q gi|254780664|r 87 GILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLF 166 (536) Q Consensus 87 gIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~ 166 (536) |. ||+|+-.-.. .. .-.--|-.|.|+|..| +|..+|+++-=..+ T Consensus 95 g~--------------------i~~Vin~~~~-------~~-------~~~~d~~~iRr~av~~--~iP~~T~~~tA~~~ 138 (143) T 2yvq_A 95 GS--------------------IDLVINLPNN-------NT-------KFVHDNYVIRRTAVDS--GIPLLTNFQVTKLF 138 (143) T ss_dssp TS--------------------CCEEEECCCC-------CG-------GGHHHHHHHHHHHHHT--TCCEECSHHHHHHH T ss_pred CC--------------------EEEEEECCCC-------CC-------CCCCCHHHHHHHHHHC--CCCEEECHHHHHHH T ss_conf 72--------------------4799978889-------86-------6556579999999976--99988589999999 Q ss_pred HHHH Q ss_conf 9875 Q gi|254780664|r 167 LAEM 170 (536) Q Consensus 167 ~~el 170 (536) ++.| T Consensus 139 ~~~l 142 (143) T 2yvq_A 139 AEAV 142 (143) T ss_dssp HHTC T ss_pred HHHH T ss_conf 9975 No 10 >>1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} (A:) Probab=98.73 E-value=3.5e-08 Score=79.59 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=87.0 Q ss_pred EEEEEEEEEC--CCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 3698998754--56869999999987--99999942768999988-9951794653488165198553237155535533 Q gi|254780664|r 16 VKTALISVHN--KTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 16 ikrALiSV~d--Ktgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) ||+.||||+| |..+.++++.|.++ ||+|++|+||+++|+++ ||+|+.|..+..-. T Consensus 1 mK~Vllsv~d~~K~~~~~~~~~l~~l~~G~~i~aT~gTa~~L~~~~Gi~~~~v~k~~~~~-------------------- 60 (126) T 1wo8_A 1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQEATGLAVERVLSGPLGG-------------------- 60 (126) T ss_dssp CCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECCCTTTTH-------------------- T ss_pred CCEEEEEHHHCCHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCEEEEEECCCCCC-------------------- T ss_conf 946898643267299999999999985476899533489999983595689994178899-------------------- Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH Q ss_conf 08898999999977998414999948888997317653112320023343469998740156313530899989889875 Q gi|254780664|r 91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEM 170 (536) Q Consensus 91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el 170 (536) +....++-+. ..||+||.=..|-.. . .-+--|-.|.|+|..+ +|..+|+++--..+++.+ T Consensus 61 ----~~~i~~~i~~--g~i~~VIn~~~~~~~-----~-------~~~~dg~~iRR~ai~~--~Vpl~T~~~tA~a~i~al 120 (126) T 1wo8_A 61 ----DLQIGARVAE--GKVLAVVFLQDPLTA-----K-------PHEPDVQALMRVCNVH--GVPLATNLVAAEALIAWI 120 (126) T ss_dssp ----HHHHHHHHHT--TCEEEEEEECCTTSC-----C-------TTHHHHHHHHHHHHHT--TCCEECSHHHHHHHHHHH T ss_pred ----CCCHHHHHHC--CCCEEEEEECCCCCC-----C-------CCCCCHHHHHHHHHHC--CCCEEECHHHHHHHHHHH T ss_conf ----9998999984--982099981699987-----6-------4521089999999971--989894899999999999 Q ss_pred HC Q ss_conf 30 Q gi|254780664|r 171 DV 172 (536) Q Consensus 171 ~~ 172 (536) +. T Consensus 121 ~~ 122 (126) T 1wo8_A 121 RK 122 (126) T ss_dssp HH T ss_pred HH T ss_conf 82 No 11 >>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} (A:12-131) Probab=98.45 E-value=8.1e-07 Score=69.66 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=79.9 Q ss_pred EEEEEEEEC--CCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC Q ss_conf 698998754--56869999999987--99999942768999988-99517946534881651985532371555355330 Q gi|254780664|r 17 KTALISVHN--KTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 (536) Q Consensus 17 krALiSV~d--Ktgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~ 91 (536) |+.||||+| |..+.++++.|.++ ||+|++|+||+++|+++ |+++..|.....-. T Consensus 1 K~ills~~d~~K~~~~~~a~~l~~ll~Gf~l~AT~gTa~~L~e~~gi~~~~v~~~~~~g--------------------- 59 (120) T 1b93_A 1 KHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAMLSGPMGG--------------------- 59 (120) T ss_dssp CEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHHHHCCCCEEECCGGGTH--------------------- T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEEEECCCCCC--------------------- T ss_conf 71899960066299999999999997798599774299999972597168763056666--------------------- Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH Q ss_conf 8898999999977998414999948888997317653112320023343469998740156313530899989889875 Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEM 170 (536) Q Consensus 92 r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el 170 (536) ..+..++-+. ..||+||.=.-|=. +. .-+--|-.|-|+|.. .+|.++|+++--..+++.+ T Consensus 60 ---~~~i~~~i~~--g~i~~VIn~~~~~~-----~~-------~~~~d~~~iRR~Av~--~~Vpl~T~~~tA~~~~~ai 119 (120) T 1b93_A 60 ---DQQVGALISE--GKIDVLIFFWDPLN-----AV-------PHDPDVKALLRLATV--WNIPVATNVATADFIIQSP 119 (120) T ss_dssp ---HHHHHHHHHT--TCCCEEEEECCTTS-----CC-------TTHHHHHHHHHHHHH--TTCCEESSHHHHHHHHTSG T ss_pred ---CCCHHHHHHC--CCCCEEEECCCCCC-----CC-------CCCCHHHHHHHHHHH--CCCCEEECHHHHHHHHHHH T ss_conf ---7659999976--98338997577767-----87-------652329999999997--1995562799999999979 No 12 >>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} (A:28-147) Probab=98.29 E-value=2.1e-06 Score=66.71 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=79.6 Q ss_pred EEEEEEEEC--CCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC Q ss_conf 698998754--56869999999987--99999942768999988-99517946534881651985532371555355330 Q gi|254780664|r 17 KTALISVHN--KTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 (536) Q Consensus 17 krALiSV~d--Ktgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~ 91 (536) |+.||||.| |..+.++|+.|.++ ||+|++|+||+++|+++ |++|..|.....- | T Consensus 1 k~Ills~~d~~K~~~~~~a~~l~~ll~G~~l~AT~gTa~~L~~~~gi~v~~v~~~~~~-----------------~---- 59 (120) T 1vmd_A 1 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKSGPLG-----------------G---- 59 (120) T ss_dssp CEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSCGGGT-----------------H---- T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCEEEEEECCCCC-----------------C---- T ss_conf 4357874125579999999999999749759971019999986029648998558776-----------------6---- Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHH Q ss_conf 8898999999977998414999948888997317653112320023343469998740156313530899989889875 Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEM 170 (536) Q Consensus 92 r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el 170 (536) +.+..++=+. ..||+||.---|=. +. .-+--|-.|.|+|.. .+|.++|+++--..+++.| T Consensus 60 ---~~~i~~~i~~--g~i~~VIn~~~~~~-----~~-------~~~~dg~~iRR~Av~--~~ipl~T~~~tA~~~~~aL 119 (120) T 1vmd_A 60 ---DQQIGAMIAE--GKIDVLIFFWDPLE-----PQ-------AHDVDVKALIRIATV--YNIPVAITRSTADFLISSP 119 (120) T ss_dssp ---HHHHHHHHHT--TSCCEEEEECCSSS-----CC-------TTSCCHHHHHHHHHH--TTCCEESSHHHHHHHHHSG T ss_pred ---CCCHHHHHHC--CCCCEEEECCCCCC-----CC-------CCCCHHHHHHHHHHH--HCCCEEECHHHHHHHHHHH T ss_conf ---6789999976--99778997777766-----77-------565409999999998--3987773699999999868 No 13 >>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} (A:) Probab=93.07 E-value=0.76 Score=26.24 Aligned_cols=186 Identities=13% Similarity=0.133 Sum_probs=91.5 Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCC- Q ss_conf 8999999977998414999948888997317653112320023343469998740156313530899989889875302- Q gi|254780664|r 95 PAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN- 173 (536) Q Consensus 95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~- 173 (536) ..+...|++- .++++++-.|.=.. .....+...++++||. +-|-...+-.++..+.+++|-..+..+-+.. T Consensus 49 ~~~l~r~~~g---g~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~t~~di~~~~~~gkiav 120 (369) T 1itu_A 49 HTNIPKLRAG---FVGGQFWSVYTPCD-TQNKDAVRRTLEQMDV----VHRMCRMYPETFLYVTSSAGIRQAFREGKVAS 120 (369) T ss_dssp SCCHHHHHHT---TEEEEEEEECCCGG-GTTTTHHHHHHHHHHH----HHHHHHHCTTTEEECCSHHHHHHHHHHTCEEE T ss_pred CCCHHHHHHC---CCCEEEEEEEECCC-CCCHHHHHHHHHHHHH----HHHHHHHCCCCEEEECCHHHHHHHHHCCCEEE T ss_conf 6579999966---99879999980787-7765899999999999----99999969887898589999999997798589 Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEC---CCCCC Q ss_conf ----34566678899999999987422899998753310121134432101233334367881006505760---47766 Q gi|254780664|r 174 ----NGKIPYNFRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYST---PEKKS 246 (536) Q Consensus 174 ----~g~~~~~~R~~lA~kAF~~ta~YD~~Ia~~l~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~---~~~~~ 246 (536) +|.-.++.+ ++. -.+|. .+.....+--.++.|+=-.++.... ..... T Consensus 121 ~l~iEg~~~l~~~--l~~-------------l~~~~-----------~lGvR~i~lt~~~~N~la~g~~~~~~~~~~~~~ 174 (369) T 1itu_A 121 LIGVEGGHSIDSS--LGV-------------LRALY-----------QLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQ 174 (369) T ss_dssp EEEEECGGGGTTC--HHH-------------HHHHH-----------HTTEEEEESCSSSCCSSBCBGGGGGTSSCCSSS T ss_pred EECCCCCHHHCCC--HHH-------------HHHHH-----------HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 8557553332484--889-------------99999-----------749649996358788777765434688876678 Q ss_pred CCCCHHHCCCCCC-----CCCCCCCC----CHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CHHHHHHHHHHHHCCCC Q ss_conf 8210121058988-----83122212----00116776424556727999615686565452-01689999998533213 Q gi|254780664|r 247 GIAHAVLVQGKPL-----SYNNINDL----DAAFELVSEFRSQDCAACVIVKHMNPCGVATA-DTLVEAYRRALSCDPIS 316 (536) Q Consensus 247 ~~~~~~ql~GKeL-----SYNNllD~----daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~-~~~~~Ay~~A~~~DP~S 316 (536) |+..+ ||++ .-.=++|+ +.+..-+.++.+ .| +|+=|+|+-++.-. .|+.+.-.++.+. T Consensus 175 GLt~~----G~~~V~~mn~lGiiIDvsH~s~~~~~d~~~~s~--~P--vi~SHs~~r~l~~~~RNl~De~ir~ia~---- 242 (369) T 1itu_A 175 GLSPF----GQRVVKELNRLGVLIDLAHVSVATMKATLQLSR--AP--VIFSHSSAYSVCASRRNVPDDVLRLVKQ---- 242 (369) T ss_dssp SBCHH----HHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCS--SC--CEESSCCBTTTSCCTTSBCHHHHHHHHH---- T ss_pred CCCHH----HHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCC--CC--EEEECCCHHHCCCCCCCCCHHHHHHHHH---- T ss_conf 96735----499999987538244437787899999984158--97--4651426664078767998899999996---- Q ss_pred CCCEEEEECCC Q ss_conf 20045554275 Q gi|254780664|r 317 AFGGIIAFNRE 327 (536) Q Consensus 317 AFGGIIa~N~~ 327 (536) -||+|.+|.- T Consensus 243 -~GGviGi~~~ 252 (369) T 1itu_A 243 -TDSLVMVNFY 252 (369) T ss_dssp -HTCEEEECCC T ss_pred -CCCCEEEECC T ss_conf -4995765046 No 14 >>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=87.33 E-value=1.2 Score=24.93 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=32.1 Q ss_pred CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 55589999719959-99389877988999999875977997 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f 528 (536) ++-++.+.+.|+++ ++|||| .++|..+.|.++||.++- T Consensus 72 ~~~~~e~~~~gik~v~~~~~~--~~e~~~~~a~~~gi~iip 110 (122) T 3ff4_A 72 LSEYNYILSLKPKRVIFNPGT--ENEELEEILSENGIEPVI 110 (122) T ss_dssp GGGHHHHHHHCCSEEEECTTC--CCHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHCCCEEEC T ss_conf 999999985399999993598--799999999996997994 No 15 >>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129) Probab=86.28 E-value=0.8 Score=26.09 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=40.8 Q ss_pred CCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 5558999971995999389877988999999875977997478544 Q gi|254780664|r 489 PDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHF 534 (536) Q Consensus 489 ~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF 534 (536) .+-++.+.+.++.+||=.+|-.=++++++.|+++|++++-|....| T Consensus 70 ~~~~~~~~~~~~~~iiit~~~~~~~~i~~~a~~~~iPil~t~~~t~ 115 (129) T 1ko7_A 70 KGRMRKLCRPETPAIIVTRDLEPPEELIEAAKEHETPLITSKIATT 115 (129) T ss_dssp TTHHHHHCCTTCCCEEECTTCCCCHHHHHHHHHTTCCEEECCSCHH T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCHH T ss_conf 9999997367998899979999989999999981983998487489 No 16 >>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} (A:1-78,A:169-196) Probab=85.42 E-value=1.1 Score=25.17 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=30.9 Q ss_pred CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHH-CCCCEEEHH Q ss_conf 4568699999999879999994276899998-899517946 Q gi|254780664|r 25 NKTGVVEFASRLLSRGIKIISTGGTCQLLEE-EGIPVTSVF 64 (536) Q Consensus 25 dKtgl~~la~~L~~~g~~iisTgGTa~~l~~-~gi~v~~Vs 64 (536) |=+.-+++|+.|.+.-==|||-||||+.|++ .++||.++. T Consensus 37 ~l~egv~iAr~l~~g~DVIISRGgTA~lIr~~v~iPVVeI~ 77 (106) T 2q5c_A 37 SLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIK 77 (106) T ss_dssp CHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEEC T ss_pred EHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEEE T ss_conf 29999999998755988999896489999985899889970 No 17 >>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} (A:1-94,A:422-459) Probab=85.01 E-value=0.73 Score=26.39 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=19.6 Q ss_pred CCHHHHHHHCCCCE-EEECCCCCCHH-HHHHHHHHCCCEEE Q ss_conf 55589999719959-99389877988-99999987597799 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSVRDS-EAITVADQHGIAMV 527 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSirD~-evI~aan~~gi~m~ 527 (536) +|.++.+.+.|+++ +++.|.+-.|. +..+.|.++||.++ T Consensus 50 ~~vi~ea~~~GvkvViIt~G~~e~~~~~l~~~Ar~~GirII 90 (132) T 3dmy_A 50 AELANQALDRNLNVXXFSDNVTLEDEIQLKTRAREKGLLVX 90 (132) T ss_dssp HHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEE T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEE T ss_conf 99999999879978999599998999999999998799999 No 18 >>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} (A:) Probab=84.30 E-value=1.4 Score=24.27 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=32.9 Q ss_pred CCCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 855589999719959-99389877988999999875977997 Q gi|254780664|r 488 FPDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 488 F~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f 528 (536) -++-++.+.+.|+++ ++|||| -+++.++.|.++||.++- T Consensus 82 ~~~~v~ea~~~gi~~~~~~~~g--~~e~~~~~a~~~gi~vig 121 (138) T 1y81_A 82 GLQVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSF 121 (138) T ss_dssp HHHHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEEC T ss_pred HHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHCCCEEEE T ss_conf 9999999985699889850660--189999999984998991 No 19 >>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:) Probab=82.84 E-value=1.9 Score=23.36 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=33.3 Q ss_pred CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEECC Q ss_conf 55589999719959-9938987798899999987597799747 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFTG 530 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fTg 530 (536) +|-++.+.+.|+++ ++|||| .+++..+.|.++||.++--+ T Consensus 91 ~~i~~e~~~~g~k~v~~~~~g--~~e~~~~~a~~~gi~vvgp~ 131 (144) T 2d59_A 91 MEYVEQAIKKGAKVVWFQYNT--YNREASKKADEAGLIIVANR 131 (144) T ss_dssp HHHHHHHHHHTCSEEEECTTC--CCHHHHHHHHHTTCEEEESC T ss_pred HHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHCCCEEECCC T ss_conf 999999997299999994264--49999999999699889568 No 20 >>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} (A:) Probab=82.60 E-value=1.4 Score=24.39 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=30.4 Q ss_pred CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 55589999719959-99389877988999999875977997 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f 528 (536) ++-++.+.+.|++. ++|||| .+++.++.|.++||.++- T Consensus 84 ~~~i~e~~~~g~k~~~~~~~~--~~e~~~~~a~~~gi~iig 122 (145) T 2duw_A 84 WGVAQEAIAIGAKTLWLQLGV--INEQAAVLAREAGLSVVM 122 (145) T ss_dssp HHHHHHHHHHTCCEEECCTTC--CCHHHHHHHHTTTCEEEC T ss_pred HHHHHHHHHCCCCEEEECCCH--HHHHHHHHHHHCCCEEEC T ss_conf 999999997299759952454--419999999996998993 No 21 >>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} (A:) Probab=79.95 E-value=1.3 Score=24.53 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=38.2 Q ss_pred CCHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 555899997-1995999389877988999999875977997478544 Q gi|254780664|r 489 PDGIVEAIK-AGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHF 534 (536) Q Consensus 489 ~D~ie~aa~-~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~RhF 534 (536) .|-+..|.+ .|+.+||=.||.-=++++++.|++.|++++.|..=.| T Consensus 63 ~dv~~~al~~~~~~~iIltg~~~~~~~v~~~a~~~~ipIl~t~~dt~ 109 (139) T 2ioj_A 63 SDLLLTALEXPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTL 109 (139) T ss_dssp HHHHHHHTTCTTEEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCHH T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHH T ss_conf 89999998568961999839989899999999777982999678799 No 22 >>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} (A:1-45,A:102-193) Probab=79.06 E-value=4.8 Score=20.45 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=66.1 Q ss_pred HHHHHHHHHCCCCC----EEEEEECCEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCH Q ss_conf 99999986005667----79999689389972968888--9999999999876420012222348709997366868555 Q gi|254780664|r 418 MKFAFKVVKHVKSN----AVVYAKDGRTVGIGSGQTSR--VDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDG 491 (536) Q Consensus 418 L~FA~kv~K~vkSN----AIv~ak~~~tiGiGaGQ~sR--Vda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ 491 (536) |..|..+..-.+.= +-||++|+..||.|.--+.| ..|--.|+.+|..... .++|+.|-+- .+|=+-+ T Consensus 7 ~~~a~~~~~~~~~~~~~vg~~~~~~~~i~~~g~~~~p~~t~HAEi~Ai~~a~~~~~------~l~g~tlYvT-lEPC~mC 79 (137) T 1vq2_A 7 LQIAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGEIHAELNAILFAAENGS------SIEGATMYVT-LSPCPDC 79 (137) T ss_dssp HHHHHHHHTTCCCSSBCCEEEEEETTEEEEEEECBCCTTCBCHHHHHHHHHHHHTC------CCTTCEEEEE-ECCCHHH T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC------CCCCCEEEEC-CCCCHHH T ss_conf 99999999768999998579999799899973378876775689999999886168------9877568706-7996789 Q ss_pred HHHHHHCCCCEEEECCCCCC-HHHHHHHHHHCCCEE Q ss_conf 89999719959993898779-889999998759779 Q gi|254780664|r 492 IVEAIKAGVTAVIQPGGSVR-DSEAITVADQHGIAM 526 (536) Q Consensus 492 ie~aa~~Gi~aIiqPGGSir-D~evI~aan~~gi~m 526 (536) ...+..+||+-|+----+-+ -..-++.-.+.||.. T Consensus 80 a~aii~aGI~rVvyg~~~p~~~~~~~~~L~~~gI~V 115 (137) T 1vq2_A 80 AKAIAQSGIKKLVYCETYDKNKPGWDDILRNAGIEV 115 (137) T ss_dssp HHHHHHHTCCEEEEEECCTTCCTTTTHHHHHTTCEE T ss_pred HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEE T ss_conf 999983047789996179995189999999879989 No 23 >>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:) Probab=73.43 E-value=4.5 Score=20.61 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=28.0 Q ss_pred CCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 55589999719959-99389877988999999875977997 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~f 528 (536) +|-++.+.+.|+++ ++|||| .+++..+.|.++|+.++- T Consensus 84 ~~~l~e~~~~g~~~~~~~~g~--~~e~~~~~~~~~gi~vvg 122 (140) T 1iuk_A 84 MDHLPEVLALRPGLVWLQSGI--RHPEFEKALKEAGIPVVA 122 (140) T ss_dssp TTTHHHHHHHCCSCEEECTTC--CCHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCEEEC T ss_conf 999999996498989989897--799999999996997992 No 24 >>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Archaeoglobus fulgidus} (A:) Probab=71.79 E-value=4.6 Score=20.56 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=28.9 Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECC Q ss_conf 99997199599938987798899999987597799747 Q gi|254780664|r 493 VEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTG 530 (536) Q Consensus 493 e~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg 530 (536) +...+.|++++|--|| |.+++.++|.++++-+.++| T Consensus 105 ~~l~~~Gv~~~iGKG~--~s~~~~~a~k~~gvYl~~~G 140 (192) T 2isb_A 105 KILEKVECXGIIGKGG--XSEEVVEAXRGKAAYFAFTG 140 (192) T ss_dssp HHHHHCSCEEEEEBSC--CCHHHHHHHTTTEEEEEECS T ss_pred HHHHHCCEEEEECCCC--CCHHHHHHHHCCCEEEEECC T ss_conf 9998508189981467--77667999866979999476 No 25 >>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:1-111,A:250-293) Probab=71.77 E-value=7.2 Score=19.15 Aligned_cols=45 Identities=24% Similarity=0.190 Sum_probs=34.4 Q ss_pred CCCHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEECCCC Q ss_conf 855589999719959-993898779889999998759779974785 Q gi|254780664|r 488 FPDGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFTGIR 532 (536) Q Consensus 488 F~D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fTg~R 532 (536) ..+-++.+.+.|+.+ ||.|..+...++.++.+.+.||++++.+.. T Consensus 53 q~~~i~~li~~~vdGiII~p~~~~~~~~~l~~L~~~gIPvV~id~~ 98 (155) T 3l6u_A 53 EREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRX 98 (155) T ss_dssp HHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSC T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCC T ss_conf 9999999997699899971566301599999999769929998877 No 26 >>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-126) Probab=71.64 E-value=4.6 Score=20.58 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=29.2 Q ss_pred CCHHHHHHHCCCCE-EEECCCCC-------CH-HHHHHHHHHCCCEEE Q ss_conf 55589999719959-99389877-------98-899999987597799 Q gi|254780664|r 489 PDGIVEAIKAGVTA-VIQPGGSV-------RD-SEAITVADQHGIAMV 527 (536) Q Consensus 489 ~D~ie~aa~~Gi~a-IiqPGGSi-------rD-~evI~aan~~gi~m~ 527 (536) ++-++.+.+.|++. ++||||-- ++ .++..+|+++||.++ T Consensus 78 ~~~v~e~~~~gi~~ii~~~~g~~e~~~~~~~~~~~~~~~a~~~g~rl~ 125 (126) T 2csu_A 78 KDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGXRII 125 (126) T ss_dssp HHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEE T ss_conf 999999998499889971677665454106899999998862697485 No 27 >>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} (A:1-107,A:264-346) Probab=71.01 E-value=7.5 Score=19.03 Aligned_cols=41 Identities=7% Similarity=0.081 Sum_probs=23.9 Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCC Q ss_conf 58999971995999389877988999999875977997478 Q gi|254780664|r 491 GIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGI 531 (536) Q Consensus 491 ~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fTg~ 531 (536) .+..+.+.||.+||=|..|--=.-+...|++.+|+|+-+.. T Consensus 52 ~~~~li~~gV~aIiGp~~s~~~~~v~~i~~~~~IP~Is~s~ 92 (190) T 3kg2_A 52 AFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF 92 (190) T ss_dssp HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSC T ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99999866987999899718999999999867981998453 No 28 >>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:1-116,A:254-304) Probab=64.57 E-value=9.9 Score=18.14 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=16.9 Q ss_pred HHHHHHHCCCCEE-EECCCCCCHHHHHHHHHHCCCEEEECC Q ss_conf 5899997199599-938987798899999987597799747 Q gi|254780664|r 491 GIVEAIKAGVTAV-IQPGGSVRDSEAITVADQHGIAMVFTG 530 (536) Q Consensus 491 ~ie~aa~~Gi~aI-iqPGGSirD~evI~aan~~gi~m~fTg 530 (536) -++.+...|+.+| |.|-.+-...+.++.|.+.||++++.+ T Consensus 61 ~i~~li~~~vDgIii~p~~~~~~~~~i~~~~~~gIPvV~id 101 (167) T 3gbv_A 61 TSQAVIEEQPDGVXFAPTVPQYTKGFTDALNELGIPYIYID 101 (167) T ss_dssp HHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEES T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 99999975999899960453202999999997197799996 No 29 >>2wjw_A Glutamate receptor 2; transport protein, postsynaptic cell membrane, GLUR2, synapse, membrane, palmitate, synaptic plasticity, alternative splicing; HET: NAG; 1.80A {Homo sapiens} PDB: 2wjx_A 3h5v_A* 3h5w_A (A:1-106,A:242-342) Probab=60.26 E-value=12 Score=17.61 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=36.6 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCC----CHHH----HHHHHHHHHHHHEECCCCHHHHHH--HHCCCCCEEEECC Q ss_conf 01689999998533213200455542754----2145----787886543111126879899988--5124553156316 Q gi|254780664|r 300 DTLVEAYRRALSCDPISAFGGIIAFNREV----DQEV----AKEVIKVFTEAIIAPTLSEEAADV--LAKKPSMRFLKTS 369 (536) Q Consensus 300 ~~~~~Ay~~A~~~DP~SAFGGIIa~N~~v----d~~~----A~~I~~~F~EvIiAP~f~~eAlei--L~~KKnlRil~~~ 369 (536) .....|++.|. |-+.+=||+....-.. |... +..+.+.=+..|+.|..+..++.+ +..+.++=++... T Consensus 14 ~~~~~a~~lAi--~~iN~~g~~l~~~i~~~~~~d~~~a~~~~~~~~~~~v~aiiG~~~s~~~~av~~i~~~~~ip~i~~s 91 (207) T 2wjw_A 14 DQEYSAFRVGM--VQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPS 91 (207) T ss_dssp HHHHHHHHHHH--HHHCCSSCCEEEEEEEECTTCHHHHHHHHHHHHHHTCSCEEECCCTTTHHHHHHHHHHHTCCEEECS T ss_pred HHHHHHHHHHH--HHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEC T ss_conf 59999999999--9985199955875899727998999999999997698799978973789999999863585258720 No 30 >>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161) Probab=59.53 E-value=7.1 Score=19.21 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=39.3 Q ss_pred EECCCCHHHHHHHHHHCCC---------EEEEEH-HHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCC Q ss_conf 7545686999999998799---------999942-768999988995179465348816519855323715553553308 Q gi|254780664|r 23 VHNKTGVVEFASRLLSRGI---------KIISTG-GTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIR 92 (536) Q Consensus 23 V~dKtgl~~la~~L~~~g~---------~iisTg-GTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r 92 (536) ..-..++.-|.+.|...+. .+++-| +|++.|++.|+++.-+.+-.....+++=-.+..+--+..|-.. T Consensus 18 FTS~~~V~~~~~~~~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~g~~~~~~p~~~~~e~L~~~~~~~~~vl~~~g~~~-- 95 (114) T 1wcw_A 18 ATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKP-- 95 (114) T ss_dssp ECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSSHHHHGGGSCCCCEEEEEECCSSC-- T ss_pred EECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC-- T ss_conf 979899999999998739647678418859999789999999749997227513389999864358848999707988-- Q ss_pred CCHHHHHHHHHCCCCCEEE Q ss_conf 8989999999779984149 Q gi|254780664|r 93 DNPAHMKFMQDHELESIDL 111 (536) Q Consensus 93 ~~~~~~~~l~~~~i~~IDl 111 (536) ++.=.+.|++.|+.-..+ T Consensus 96 -~~~L~~~L~~~G~~v~~v 113 (114) T 1wcw_A 96 -LPLLENALAERGYRVLPL 113 (114) T ss_dssp -CHHHHHHHHHTTEEEEEE T ss_pred -HHHHHHHHHHCCCCCEEE T ss_conf -179999999779976698 No 31 >>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* (A:1-120,A:277-351) Probab=58.27 E-value=12 Score=17.62 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=33.7 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCE--------EEEECCCCCHHHHHH-----HHHHHHHHHEECCCCHHHHHHH--H Q ss_conf 565452016899999985332132004--------555427542145787-----8865431111268798999885--1 Q gi|254780664|r 294 CGVATADTLVEAYRRALSCDPISAFGG--------IIAFNREVDQEVAKE-----VIKVFTEAIIAPTLSEEAADVL--A 358 (536) Q Consensus 294 CGvA~~~~~~~Ay~~A~~~DP~SAFGG--------IIa~N~~vd~~~A~~-----I~~~F~EvIiAP~f~~eAleiL--~ 358 (536) .|-..+.....|.+.|.+- +-+=|| ++..+...+...|.. |.+.-+.+|+-|..+..+..+. . T Consensus 14 sG~~~g~~~~~a~~~Ai~~--iN~~g~il~g~~i~~~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~S~~~~av~~~a 91 (195) T 3h6g_A 14 VESGPMGAEELAFRFAVNT--INRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSIC 91 (195) T ss_dssp SSSCSCCHHHHHHHHHHHH--HHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHH--HHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH T ss_conf 8987764899999999999--96599989997799999846878999999999998865986999888727777766776 Q ss_pred CCCCCEEEE Q ss_conf 245531563 Q gi|254780664|r 359 KKPSMRFLK 367 (536) Q Consensus 359 ~KKnlRil~ 367 (536) ++.++=++. T Consensus 92 ~~~~ip~is 100 (195) T 3h6g_A 92 NALGVPHIQ 100 (195) T ss_dssp HHTTCCEEE T ss_pred HCCCCCCCC T ss_conf 404874123 No 32 >>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} (A:) Probab=57.43 E-value=13 Score=17.28 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=9.1 Q ss_pred CHHHHHHHHHHHHCCCCCCCE Q ss_conf 016899999985332132004 Q gi|254780664|r 300 DTLVEAYRRALSCDPISAFGG 320 (536) Q Consensus 300 ~~~~~Ay~~A~~~DP~SAFGG 320 (536) +.+.+-...|...|=.-.+|| T Consensus 80 ~~l~eki~l~~~~~V~v~~GG 100 (276) T 1u83_A 80 KDLEEKISTLKEHDITFFFGG 100 (276) T ss_dssp TTHHHHHHHHHHTTCEEEECH T ss_pred HHHHHHHHHHHHCCCEEECCC T ss_conf 889999999998699586798 No 33 >>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} (A:1-416) Probab=55.89 E-value=8.2 Score=18.73 Aligned_cols=14 Identities=7% Similarity=0.375 Sum_probs=5.8 Q ss_pred HHHHHHHHCCCCCE Q ss_conf 99999997799841 Q gi|254780664|r 96 AHMKFMQDHELESI 109 (536) Q Consensus 96 ~~~~~l~~~~i~~I 109 (536) +|++-|+++|+..+ T Consensus 33 ~Di~lmk~~G~n~v 46 (416) T 1vem_A 33 NDLRWAKQNGFYAI 46 (416) T ss_dssp HHHHHHHHTTEEEE T ss_pred HHHHHHHHCCCCEE T ss_conf 99999998399889 No 34 >>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:1-109,A:256-284) Probab=55.79 E-value=14 Score=17.10 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=34.0 Q ss_pred CCCHHHHHHHCCCCEE-EECCCCCCHHHHHHHHHHCCCEEEECCCC Q ss_conf 8555899997199599-93898779889999998759779974785 Q gi|254780664|r 488 FPDGIVEAIKAGVTAV-IQPGGSVRDSEAITVADQHGIAMVFTGIR 532 (536) Q Consensus 488 F~D~ie~aa~~Gi~aI-iqPGGSirD~evI~aan~~gi~m~fTg~R 532 (536) ..+.++.+.+.|+.+| +.|.++-..++.++.+.++||++++-+.+ T Consensus 46 ~~~~i~~li~~~vDGIIi~~~~~~~~~~~i~~l~~~gIPvV~id~~ 91 (138) T 8abp_A 46 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 91 (138) T ss_dssp HHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSC T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECC T ss_conf 9999999997599989980532345589999999739988999545 No 35 >>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* (A:1-205,A:366-404) Probab=55.13 E-value=14 Score=17.02 Aligned_cols=110 Identities=11% Similarity=-0.016 Sum_probs=66.8 Q ss_pred CHHHHHHHHHHCC--CEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 8699999999879--99999427689999889951794653488165198553237155535533088989999999779 Q gi|254780664|r 28 GVVEFASRLLSRG--IKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHE 105 (536) Q Consensus 28 gl~~la~~L~~~g--~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~ 105 (536) -+..||+.|.+.| |.++.+....+.++..|++...+.+ +.++..+...+.....+..-.-..+........+. .. T Consensus 16 P~l~LA~~L~~rGh~Vt~~~~~~~~~~v~~~g~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 92 (244) T 3h4t_A 16 PLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGR--AVRAGAREPGELPPGAAEVVTEVVAEWFDKVPAAI-EG 92 (244) T ss_dssp HHHHHHHHHHHTTCCEEEEECGGGHHHHHHTTCCEEECSS--CSSGGGSCTTCCCTTCGGGHHHHHHHHHHHHHHHH-TT T ss_pred HHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCC--CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC T ss_conf 9999999999879989999782477899877984898782--58877359666668999999999999999999874-59 Q ss_pred CCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHH Q ss_conf 98414999948888997317653112320023343469998740156313530899 Q gi|254780664|r 106 LESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQ 161 (536) Q Consensus 106 i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~ 161 (536) -.+.|+||++..-+ .++.-|..-+-..|...+.|. T Consensus 93 ~~~~~~vi~d~~~~---------------------~a~~vA~~lgIP~v~~~~~~a 127 (244) T 3h4t_A 93 CDAVVTTGLLPAAV---------------------AVRSMAEKLGIPYRYTVLSPD 127 (244) T ss_dssp CSEEEEEECHHHHH---------------------HHHHHHHHHTCCEEEEESSGG T ss_pred CCEEEECCCCHHHH---------------------HHHHHHHHHCCCEEECCCCCC T ss_conf 99999998633788---------------------999999981998463045763 No 36 >>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} (A:) Probab=55.00 E-value=14 Score=17.01 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=63.1 Q ss_pred HHHHHHHHHC-----CCCCEEEEEECCEEEEECCCCC------------------------CHHHHHHHHHHHHHHHHHC Q ss_conf 9999998600-----5667799996893899729688------------------------8899999999998764200 Q gi|254780664|r 418 MKFAFKVVKH-----VKSNAVVYAKDGRTVGIGSGQT------------------------SRVDSTRFAAIKAHNISAQ 468 (536) Q Consensus 418 L~FA~kv~K~-----vkSNAIv~ak~~~tiGiGaGQ~------------------------sRVda~~iA~~KA~~~~~~ 468 (536) |..|...++. .+-=|+++++|+..|+.|.-++ .-+.+.+.|+.+... T Consensus 17 m~~A~~~A~~s~~~~~~~gaviv~~dg~Ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~A~~~a~~~~~~---- 92 (178) T 2w4l_A 17 MAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKNL---- 92 (178) T ss_dssp HHHHHHHHTTCCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC------- T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCC---- T ss_conf 9999999973699999838999988942055032678888766443200002255433332104065999873367---- Q ss_pred CCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHH----HHHHHHCCCE Q ss_conf 12222348709997366868555899997199599938987798899----9999875977 Q gi|254780664|r 469 ADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEA----ITVADQHGIA 525 (536) Q Consensus 469 ~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiqPGGSirD~ev----I~aan~~gi~ 525 (536) ..+.|+.|-.- -+|=+-+...+..+||+-|+-....-.+..+ ++.-.+.++. T Consensus 93 ----~~~~~~tlYvT-~ePC~mCa~ai~~agI~~Vvy~~~~~~~~~~~~~~~~~~~~~~v~ 148 (178) T 2w4l_A 93 ----TDVKGCSMYVA-LFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVT 148 (178) T ss_dssp -----CCTTCEEEEE-ECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCE T ss_pred ----CCCCCCEEEEC-CCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE T ss_conf ----88789758975-898799999999959798999645799827779999999988999 No 37 >>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} (A:) Probab=54.13 E-value=10 Score=18.11 Aligned_cols=121 Identities=15% Similarity=0.060 Sum_probs=69.8 Q ss_pred EEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCH Q ss_conf 36989987545686999999998799999942768999988995179465348816519855323715553553308898 Q gi|254780664|r 16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNP 95 (536) Q Consensus 16 ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~ 95 (536) ||++||.=.-.-==..+|+.|.+.|+.++-++-+...+.+.--. ++ ..+..- +.+++.- T Consensus 1 MK~vlVTGas~GIG~aiA~~la~~G~~V~~~~r~~~~~~~~~~~----------------~~----~~~~~D-v~~~~~~ 59 (254) T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF----------------AE----TYPQLK-PMSEQEP 59 (254) T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHH----------------HH----HCTTSE-ECCCCSH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------------HC----CEEEEC-CCCHHHH T ss_conf 99999966887889999999998699899997988899999862----------------18----187712-3899999 Q ss_pred HH-HHHHHHCCCCCEEEEEEECCCHHHHH--CCCC-CHHHHHHCCCCCCHHHHHHHHC------CCCCCEEEE Q ss_conf 99-99999779984149999488889973--1765-3112320023343469998740------156313530 Q gi|254780664|r 96 AH-MKFMQDHELESIDLVVVNLYPFEESF--CRED-DYYTMVENIDIGGPSMIRAAAK------NHDYVTILT 158 (536) Q Consensus 96 ~~-~~~l~~~~i~~IDlVvvNLYPF~~~v--~~~~-~~~~~IEnIDIGGpsmiRAAAK------N~~~V~Vi~ 158 (536) .. .+++.+ ....+|++|.|--.+.... .... .....+..+..+++-+++.++. +...+..++ T Consensus 60 ~~~~~~~~~-~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Ii~~s 131 (254) T 1zmt_A 60 AELIEAVTS-AYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFIT 131 (254) T ss_dssp HHHHHHHHH-HHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEC T ss_pred HHHHHHHHH-HHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCC T ss_conf 999999999-809999899888778999991659999999999998088999999999876542011120122 No 38 >>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:57-195) Probab=53.90 E-value=15 Score=16.89 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=28.6 Q ss_pred CCCHHHHHHHHHHHHHHHEECCCCHHHH-HHH-H-CCCCCEEEECCC Q ss_conf 5421457878865431111268798999-885-1-245531563167 Q gi|254780664|r 327 EVDQEVAKEVIKVFTEAIIAPTLSEEAA-DVL-A-KKPSMRFLKTSS 370 (536) Q Consensus 327 ~vd~~~A~~I~~~F~EvIiAP~f~~eAl-eiL-~-~KKnlRil~~~~ 370 (536) .|-..||+.+.+.=+.+.+.+.|+.+.| +.+ . ..++.|+|.... T Consensus 63 ~VG~~T~~~L~~~G~~~~~~~~~~~~~L~~~l~~~~~~~~~iL~~~~ 109 (139) T 1jr2_A 63 VVGNATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCG 109 (139) T ss_dssp ECSHHHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEES T ss_pred EECHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 98499999999869933367888999999999874468982899724 No 39 >>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, thioredoxin fold, structural genomics, PSI- 2; HET: MSE; 1.50A {Staphylococcus aureus subsp} (A:) Probab=53.84 E-value=8.6 Score=18.60 Aligned_cols=51 Identities=16% Similarity=0.336 Sum_probs=32.4 Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH Q ss_conf 27999615686565452016899999985332132004555427542145787 Q gi|254780664|r 283 AACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKE 335 (536) Q Consensus 283 Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~ 335 (536) +.++|+||.+-||++. ....-|++-+.-..+..+==.|-=+|++--..|+. T Consensus 25 ~~~~ifKHSttC~IS~--~a~~efe~~~~~~~~~~yyL~v~~~R~vSn~IAe~ 75 (112) T 3iv4_A 25 KYVFVLKHSETCPISA--NAYDQFNKFLYERDXDGYYLIVQQERDLSDYIAKK 75 (112) T ss_dssp SEEEEEEECTTCHHHH--HHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHH T ss_pred CCEEEEECCCCCHHHH--HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHH T ss_conf 9689996199874049--99999986422356877999841065578999999 No 40 >>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271) Probab=53.78 E-value=15 Score=16.87 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=15.6 Q ss_pred HHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEECCC Q ss_conf 89999719959-99389877988999999875977997478 Q gi|254780664|r 492 IVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFTGI 531 (536) Q Consensus 492 ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fTg~ 531 (536) ++.+.+.++.+ |+.|.++-..++.++.+.+.|+++++-+. T Consensus 50 i~~li~~~vdgiIi~~~~~~~~~~~l~~l~~~gIPvV~id~ 90 (139) T 2dri_A 50 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDR 90 (139) T ss_dssp HHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESS T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC T ss_conf 99998618764432122222316899999863775323565 No 41 >>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase, inactive mutant, pentasaccharide; HET: XYP; 2.0A {Thermobacillus xylanilyticus} PDB: 2vrk_A (A:21-377) Probab=52.33 E-value=16 Score=16.72 Aligned_cols=32 Identities=3% Similarity=0.174 Sum_probs=18.7 Q ss_pred CCCHHHHHHHHHCCCCCEEE---EEEECCCHHHHH Q ss_conf 88989999999779984149---999488889973 Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDL---VVVNLYPFEESF 123 (536) Q Consensus 92 r~~~~~~~~l~~~~i~~IDl---VvvNLYPF~~~v 123 (536) ..+++..+.++++|+..+-+ -..+.|.+++.+ T Consensus 31 ~~~~~~~~~~~~lg~~~lR~~gG~~~~~~~w~~~~ 65 (357) T 2vrq_A 31 GIRNDVLEALKQMKIPVLRWPGGCFADEYHWKDGV 65 (357) T ss_dssp TEEHHHHHHHHHHTCCEEEESCSGGGGTCCGGGGC T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC T ss_conf 73799999999629986983998704732224465 No 42 >>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:1-112,A:246-289) Probab=50.71 E-value=16 Score=16.54 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=19.1 Q ss_pred HHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEECCC Q ss_conf 589999719959-99389877988999999875977997478 Q gi|254780664|r 491 GIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFTGI 531 (536) Q Consensus 491 ~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fTg~ 531 (536) .++.+.+.|+.+ |+.|..+-..+++++.+.+.||+.++.+. T Consensus 57 ~i~~l~~~~vdgiIi~~~~~~~~~~~i~~l~~~gIPVV~id~ 98 (156) T 3brs_A 57 LIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDS 98 (156) T ss_dssp HHHHHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESS T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC T ss_conf 999999769999999787201028999988613874200134 No 43 >>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} (A:1-119) Probab=49.91 E-value=17 Score=16.46 Aligned_cols=41 Identities=7% Similarity=0.183 Sum_probs=23.2 Q ss_pred HCCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCC Q ss_conf 1058-98883122212001167764245567279996156865 Q gi|254780664|r 253 LVQG-KPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPC 294 (536) Q Consensus 253 ql~G-KeLSYNNllD~daA~~lv~ef~~~~~Pa~vIvKH~NPC 294 (536) |+=| +|++|-+=++-+.....+.++-+.+ |.|+||=++.++ T Consensus 54 QilG~~E~~Yl~~l~~e~r~~~l~~l~~~~-~P~iIvt~~~~~ 95 (119) T 1knx_A 54 AILGKREFGFLSQKTLVEQQQILHNLLKLN-PPAIILTKSFTD 95 (119) T ss_dssp EEECHHHHHHHTTSCHHHHTTTHHHHHTTC-CSCEEEETTTCC T ss_pred EEECHHHHHHHHHCCHHHHHHHHHHHHCCC-CCEEEEECCCCC T ss_conf 998789999998299999999999983889-988999895999 No 44 >>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276) Probab=49.28 E-value=17 Score=16.39 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=30.7 Q ss_pred CHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEECCCC Q ss_conf 5589999719959-993898779889999998759779974785 Q gi|254780664|r 490 DGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFTGIR 532 (536) Q Consensus 490 D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fTg~R 532 (536) .-++.+...++.+ |+.|..+-...+.++.+.+.++++++.+.+ T Consensus 49 ~~i~~l~~~~vDGIIi~~~~~~~~~~~i~~~~~~~iPVV~id~~ 92 (134) T 2vk2_A 49 KAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS 92 (134) T ss_dssp HHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSC T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCC T ss_conf 99999997599999983256541168899998619975774454 No 45 >>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* (A:77-193) Probab=47.63 E-value=16 Score=16.65 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=13.8 Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCEEEECCCC Q ss_conf 59993898779889999998759779974785 Q gi|254780664|r 501 TAVIQPGGSVRDSEAITVADQHGIAMVFTGIR 532 (536) Q Consensus 501 ~aIiqPGGSirD~evI~aan~~gi~m~fTg~R 532 (536) .+|++|.-.--=.++++.|+++++.++.-|-. T Consensus 63 ~~vv~P~s~~eV~~iv~~a~~~~ipv~~rggG 94 (117) T 2uuu_A 63 DLIVLPHSHEEVERLVQLAHKYNVVIIPMGGG 94 (117) T ss_dssp SEEECCCSHHHHHHHHHHHHHHTCEEEEESSC T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 58995499999999999999879968984899 No 46 >>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycoprotein; HET: NAG BMA MAN; 1.90A {Penicillium SP} (A:1-356) Probab=46.49 E-value=19 Score=16.09 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=15.2 Q ss_pred CCCCHHHHHHHHHCCCCCEEEEE Q ss_conf 08898999999977998414999 Q gi|254780664|r 91 IRDNPAHMKFMQDHELESIDLVV 113 (536) Q Consensus 91 ~r~~~~~~~~l~~~~i~~IDlVv 113 (536) +...+.+++.++++|+..|-+-+ T Consensus 35 ~~~~~~dl~~~k~~G~N~iR~~~ 57 (356) T 1tg7_A 35 ASLYIDIFEKVKALGFNCVSFYV 57 (356) T ss_dssp GGGHHHHHHHHHTTTCCEEEEEC T ss_pred HHHHHHHHHHHHHHCCCEEEEEC T ss_conf 68889999999971997899856 No 47 >>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:1-106,A:248-291) Probab=46.40 E-value=19 Score=16.08 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=20.2 Q ss_pred HHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEECCC Q ss_conf 589999719959-99389877988999999875977997478 Q gi|254780664|r 491 GIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFTGI 531 (536) Q Consensus 491 ~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fTg~ 531 (536) -++.+...++.+ |+.|.++-.+++.++.+.+.||++++-.. T Consensus 53 ~i~~l~~~~vdgIIi~~~~~~~~~~~i~~l~~~gIPvV~i~~ 94 (150) T 3l49_A 53 QIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDT 94 (150) T ss_dssp HHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESC T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCC T ss_conf 999999759999999278403058999999986991996677 No 48 >>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus} (A:11-96) Probab=46.38 E-value=7.2 Score=19.15 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=26.4 Q ss_pred HHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEE Q ss_conf 65198553237155535533088989999999779984149 Q gi|254780664|r 71 EIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDL 111 (536) Q Consensus 71 Eil~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDl 111 (536) +..++++-||+|-|| |+.-++.|++.|+..+|. T Consensus 18 ~~~~~~iy~lG~lVH--------N~~vv~~L~~~GV~~id~ 50 (86) T 3dnf_A 18 KESQGKVYTLGPIIH--------NPQEVNRLKNLGVFPSQG 50 (86) T ss_dssp TTCCSCEEESSCSSS--------CHHHHHHHHHHTEEECCS T ss_pred HHCCCCEEEECCCCC--------CHHHHHHHHHCCCEECCH T ss_conf 745998998586768--------989999999689986353 No 49 >>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A (A:21-106) Probab=45.91 E-value=7.3 Score=19.12 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=23.5 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEE Q ss_conf 19855323715553553308898999999977998414 Q gi|254780664|r 73 MGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESID 110 (536) Q Consensus 73 l~GRVKTLHP~I~ggIL~~r~~~~~~~~l~~~~i~~ID 110 (536) .+.+|-||+|-|| |+.-++.|++.|+..+| T Consensus 19 ~~~~i~tlG~lIH--------N~~vv~~L~~~Gv~~v~ 48 (86) T 3ke8_A 19 YGAPIYVRHEVVH--------NRYVVDSLRERGAIFIE 48 (86) T ss_dssp HCSCEEEESCSSS--------CHHHHHHHHHHTEEEES T ss_pred CCCCEEECCCCCC--------CHHHHHHHHHCCCEEEC T ss_conf 0997876774664--------98999999988899935 No 50 >>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:58-160,A:293-340) Probab=45.74 E-value=19 Score=16.01 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=14.0 Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEC Q ss_conf 89999719959993898779889999998759779974 Q gi|254780664|r 492 IVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFT 529 (536) Q Consensus 492 ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fT 529 (536) ++.+.+.|+.+||-=+....+.+..+.+.+.+|+|++. T Consensus 50 i~~l~~~~vDGIIi~~~~~~~~~~~~~l~~~~IPvV~i 87 (151) T 1qpz_A 50 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM 87 (151) T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEE T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE T ss_conf 99998548874898146787277888876148877983 No 51 >>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} (A:1-129) Probab=44.94 E-value=20 Score=15.93 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=27.6 Q ss_pred CHHHHHHHCCCCEEEE-CCC-CCCH-HHHHHHHHHCCCEEE Q ss_conf 5589999719959993-898-7798-899999987597799 Q gi|254780664|r 490 DGIVEAIKAGVTAVIQ-PGG-SVRD-SEAITVADQHGIAMV 527 (536) Q Consensus 490 D~ie~aa~~Gi~aIiq-PGG-SirD-~evI~aan~~gi~m~ 527 (536) +-++.+.++|+..++. |+| +..| +++++.|.++|+.++ T Consensus 86 ~~~~~a~~~g~~v~~ekP~~~~~~~~~~l~~~a~~~g~~vv 126 (129) T 2yv2_A 86 DAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATII 126 (129) T ss_dssp HHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 89999986798789842678760357999975334642897 No 52 >>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:72-187) Probab=44.72 E-value=20 Score=15.91 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=25.6 Q ss_pred CCCCHHHHHHHHHHCCC---------EEEEEH-HHHHHHHHCCCCEEEHHHH Q ss_conf 45686999999998799---------999942-7689999889951794653 Q gi|254780664|r 25 NKTGVVEFASRLLSRGI---------KIISTG-GTCQLLEEEGIPVTSVFDI 66 (536) Q Consensus 25 dKtgl~~la~~L~~~g~---------~iisTg-GTa~~l~~~gi~v~~Vs~~ 66 (536) -..++.-|.+.|.+.|. .|++-| +|++.|++.|+.+.-+.+- T Consensus 21 S~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~G~~~~~~p~~ 72 (116) T 3d8t_A 21 TGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDG 72 (116) T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSS T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHH T ss_conf 8799999999999809755466317869998701899999879984307854 No 53 >>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer; HET: NAG; 2.00A {Rattus norvegicus} (A:1-128,A:286-360) Probab=43.95 E-value=21 Score=15.82 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=10.6 Q ss_pred HHHHEECCCCHHHHHH--HHCCCCCEEEE Q ss_conf 3111126879899988--51245531563 Q gi|254780664|r 341 TEAIIAPTLSEEAADV--LAKKPSMRFLK 367 (536) Q Consensus 341 ~EvIiAP~f~~eAlei--L~~KKnlRil~ 367 (536) +.++|.|.-+..+..+ +..+-|+-++. T Consensus 78 v~aiiGp~~s~~~~~va~~a~~~~iP~is 106 (203) T 1dp4_A 78 PAVFLGPGCVYSAAPVGRFTAHWRVPLLT 106 (203) T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEE T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCEEEE T ss_conf 86999998708776532456640863773 No 54 >>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} (A:1-222,A:384-415) Probab=42.49 E-value=22 Score=15.67 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=33.7 Q ss_pred CHHHHHHHHHHCCCEE--EEEHHHHHHHHHCCCCEEEHHHH Q ss_conf 8699999999879999--99427689999889951794653 Q gi|254780664|r 28 GVVEFASRLLSRGIKI--ISTGGTCQLLEEEGIPVTSVFDI 66 (536) Q Consensus 28 gl~~la~~L~~~g~~i--isTgGTa~~l~~~gi~v~~Vs~~ 66 (536) -...|++.|.+.|.++ +++......++..|+++..+..- T Consensus 16 p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~ 56 (254) T 1iir_A 16 PLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPS 56 (254) T ss_dssp HHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC- T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCC T ss_conf 99999999998899799996833566676579869977986 No 55 >>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} (A:) Probab=42.08 E-value=22 Score=15.63 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=53.3 Q ss_pred HHHHHHHHHHHC-CCCCEEEEEECCEEEEECCCCCCHH-HH----HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC Q ss_conf 889999998600-5667799996893899729688889-99----99999998764200122223487099973668685 Q gi|254780664|r 416 RDMKFAFKVVKH-VKSNAVVYAKDGRTVGIGSGQTSRV-DS----TRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFP 489 (536) Q Consensus 416 ~dL~FA~kv~K~-vkSNAIv~ak~~~tiGiGaGQ~sRV-da----~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~ 489 (536) ..+..|++.... -..=+-||++++.+|+.|.-|..+- |. -..|+..+.. ......+.|+.|-+-. .|=+ T Consensus 22 ~Ai~lA~~s~~~g~~pvGaViv~~~~Ii~~g~N~~~~~~~~~~hae~~a~~~a~~----~~~~~~l~~~tlY~T~-EPC~ 96 (179) T 2nx8_A 22 EALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA----HEGNWRLLDTTLFVTI-EPCV 96 (179) T ss_dssp HHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHH----HHTSSCCTTEEEEEEE-CCBH T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH----HHCCCCCCCCCEECCC-CCCH T ss_conf 9999999851369998899999899899985465544343100215566688998----6078766665011255-6781 Q ss_pred CHHHHHHHCCCCEEEE Q ss_conf 5589999719959993 Q gi|254780664|r 490 DGIVEAIKAGVTAVIQ 505 (536) Q Consensus 490 D~ie~aa~~Gi~aIiq 505 (536) -+...+..+||+-|+. T Consensus 97 mC~~ai~~agI~rVvy 112 (179) T 2nx8_A 97 MCSGAIGLARIPHVIY 112 (179) T ss_dssp HHHHHHHHTTCCEEEE T ss_pred HHHHHHHHHCCCEEEE T ss_conf 7777899835771644 No 56 >>1sjp_A Chaperonin60, 60 kDa chaperonin 2; chaperone, structural genomics, PSI, protein structure initiative; 3.20A {Mycobacterium tuberculosis} (A:148-329) Probab=41.07 E-value=12 Score=17.58 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=53.5 Q ss_pred HHEECCCCHHHHHHH---HCCCCCEEEECC--CCCCCCCCC-CEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 111268798999885---124553156316--766777666-40203210223101233453100012467778688988 Q gi|254780664|r 343 AIIAPTLSEEAADVL---AKKPSMRFLKTS--SLLDFHGEE-IVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELR 416 (536) Q Consensus 343 vIiAP~f~~eAleiL---~~KKnlRil~~~--~~~~~~~~~-~~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~pt~~e~~ 416 (536) +|||.+++.|||..| +.|..++++-++ .+-+..... .++--+.||.++-+.- .. .++-++... T Consensus 57 lIIAedv~~eaL~tLi~Nkl~g~l~v~aVkaPgfG~~rk~~L~DiAi~TG~~vi~~~~-g~---~l~~~~~~~------- 125 (182) T 1sjp_A 57 LIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEV-GL---TLENADLSL------- 125 (182) T ss_dssp EEEESCBCHHHHHHHHHHHHTTSSCCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTT-TB---CSSSCCTTT------- T ss_pred EEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCEEECHHC-CC---CHHHCCHHH------- T ss_conf 7435645699999999999997597899978985299998899889983999831111-68---733299889------- Q ss_pred HHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 8999999860056677999968938997296888899999999998 Q gi|254780664|r 417 DMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKA 462 (536) Q Consensus 417 dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA 462 (536) .-+..-|++.|+..++=-|.|....|.+=..-+.+. T Consensus 126 ----------LG~a~~v~itkd~T~ii~g~g~~~~i~~Ri~~l~~~ 161 (182) T 1sjp_A 126 ----------LGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQE 161 (182) T ss_dssp ----------SEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHH T ss_pred ----------HCEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHH T ss_conf ----------514479998257539973788789998799999999 No 57 >>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} (A:) Probab=41.05 E-value=15 Score=16.80 Aligned_cols=130 Identities=14% Similarity=0.039 Sum_probs=69.4 Q ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHH-------HHHCCCCEEEH-HHHCCCCHHCCCCCCCCCC Q ss_conf 677613698998754568699999999879999994276899-------99889951794-6534881651985532371 Q gi|254780664|r 11 HGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQL-------LEEEGIPVTSV-FDITKFPEIMGGRVKTLHP 82 (536) Q Consensus 11 ~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~-------l~~~gi~v~~V-s~~TgfpEil~GRVKTLHP 82 (536) ...++=|++||.=-.+-==..+|+.|.+.|..++-++-+... |++.|-.+.-+ -|++...++ T Consensus 39 ~~~l~gK~vlITGgs~GIG~aia~~la~~Ga~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~~~~~~---------- 108 (285) T 2c07_A 39 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEI---------- 108 (285) T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH---------- T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH---------- T ss_conf 4488998899908885899999999998699999997999999999999996299489998438999999---------- Q ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCC---CCHHHHHHHHCCC-----CCC Q ss_conf 55535533088989999999779984149999488889973176531123200233---4346999874015-----631 Q gi|254780664|r 83 KIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDI---GGPSMIRAAAKNH-----DYV 154 (536) Q Consensus 83 ~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDI---GGpsmiRAAAKN~-----~~V 154 (536) +.-..++.+ ...+||.+|.|--.+...--...+.++..+.+++ |..-++|++++.+ .++ T Consensus 109 ------------~~~~~~~~~-~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~g~I 175 (285) T 2c07_A 109 ------------SEVINKILT-EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRI 175 (285) T ss_dssp ------------HHHHHHHHH-HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEE T ss_pred ------------HHHHHHHHH-HCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCEEE T ss_conf ------------999999998-6499754201223333322234538886533057764101111125733125898299 Q ss_pred EEEECHHHH Q ss_conf 353089998 Q gi|254780664|r 155 TILTNPQDY 163 (536) Q Consensus 155 ~Vi~dp~dY 163 (536) ..+++..-+ T Consensus 176 V~isS~~~~ 184 (285) T 2c07_A 176 INISSIVGL 184 (285) T ss_dssp EEECCTHHH T ss_pred EEECCHHHC T ss_conf 998776656 No 58 >>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} (A:) Probab=41.02 E-value=8.1 Score=18.79 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.5 Q ss_pred CCCHHHHHHHHHHCCCEE Q ss_conf 779889999998759779 Q gi|254780664|r 509 SVRDSEAITVADQHGIAM 526 (536) Q Consensus 509 SirD~evI~aan~~gi~m 526 (536) |++++||+++|.+.|-.. T Consensus 28 SVds~eVr~YC~~kgWIv 45 (60) T 1ng7_A 28 AVDSQEVRDYCEKKGWIV 45 (60) T ss_dssp HHCCHHHHHHHHHHTCCC T ss_pred HCCCHHHHHHHHHCCEEE T ss_conf 638599999999779152 No 59 >>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A (A:1-217) Probab=40.42 E-value=20 Score=15.91 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 67889999999998742289999875 Q gi|254780664|r 179 YNFRKKMARQAFSRTASYDTAICRWL 204 (536) Q Consensus 179 ~~~R~~lA~kAF~~ta~YD~~Ia~~l 204 (536) +.--..++..-+...++|......-+ T Consensus 16 ~~~~~~~~~~~~~~s~~y~~~~~~~~ 41 (217) T 2i33_A 16 LTDQQLMADLWYQTAGEMKALYYQGY 41 (217) T ss_dssp GGGGGHHHHHHHHHCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77788999999997999999999999 No 60 >>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:1-124,A:261-323) Probab=39.28 E-value=24 Score=15.33 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=33.2 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEE--------EEECCCCCHHHHHHHH-----HHHHHHHEECCCCHHHHHHH--HCC Q ss_conf 54520168999999853321320045--------5542754214578788-----65431111268798999885--124 Q gi|254780664|r 296 VATADTLVEAYRRALSCDPISAFGGI--------IAFNREVDQEVAKEVI-----KVFTEAIIAPTLSEEAADVL--AKK 360 (536) Q Consensus 296 vA~~~~~~~Ay~~A~~~DP~SAFGGI--------Ia~N~~vd~~~A~~I~-----~~F~EvIiAP~f~~eAleiL--~~K 360 (536) .+.|.....+++.|.+- +-+-||+ +..+...+...|.... +.=+.+|+-|..+..++.+. -++ T Consensus 18 ~a~G~~~~~~~~lAv~~--iN~~ggil~G~~i~~v~~D~~~~~~~a~~~a~~li~~~~v~~iiG~~~S~~~~a~~~~~~~ 95 (187) T 3i45_A 18 PAFTLPYRNGWQLAVEQ--INAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQ 95 (187) T ss_dssp HHHHHHHHHHHHHHHHH--HHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH--HHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH T ss_conf 33339999999999999--9866997099899999973899999999999999963897699962688127899999998 Q ss_pred CCCEEEE Q ss_conf 5531563 Q gi|254780664|r 361 PSMRFLK 367 (536) Q Consensus 361 KnlRil~ 367 (536) .++-+|. T Consensus 96 ~~vp~i~ 102 (187) T 3i45_A 96 RKVLFMA 102 (187) T ss_dssp HTCCEEE T ss_pred HCCCCCC T ss_conf 3975334 No 61 >>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} (A:) Probab=38.90 E-value=24 Score=15.29 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=29.4 Q ss_pred HHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCC Q ss_conf 99999977998414999948888997317653112320023343 Q gi|254780664|r 97 HMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGG 140 (536) Q Consensus 97 ~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGG 140 (536) -..+.+..|....=+=++---||.+.++ .--|.+++|||||- T Consensus 24 ~~kD~R~~GskK~vINvis~i~~~e~v~--~aREAlLdNIDlG~ 65 (126) T 2rbg_A 24 IFLDVRSSGSKKTTINVFTEIQYQELVT--LIREALLENIDIGY 65 (126) T ss_dssp HHHHHHHHTCSEEEEEEECSSCHHHHHH--HTHHHHHHTTTSEE T ss_pred HHHHHHHCCCCEEEEEEECCCCHHHHHH--HHHHHHHHCCCCCE T ss_conf 9999985588528999854686799999--99999884345452 No 62 >>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} (A:1-126,A:260-339) Probab=38.79 E-value=25 Score=15.28 Aligned_cols=91 Identities=8% Similarity=0.040 Sum_probs=46.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEE-------EEECCCCCHHHHHHHHHH-----HHHHHEECCCCHHHHHHHH--CC Q ss_conf 654520168999999853321320045-------554275421457878865-----4311112687989998851--24 Q gi|254780664|r 295 GVATADTLVEAYRRALSCDPISAFGGI-------IAFNREVDQEVAKEVIKV-----FTEAIIAPTLSEEAADVLA--KK 360 (536) Q Consensus 295 GvA~~~~~~~Ay~~A~~~DP~SAFGGI-------Ia~N~~vd~~~A~~I~~~-----F~EvIiAP~f~~eAleiL~--~K 360 (536) ....|.....+.+.|+ |-+-+-||+ +..+...|...|....+. =+.+|+.|..+..++.+.. ++ T Consensus 20 ~a~~G~~~~~g~~la~--~~iN~~ggi~G~~i~~v~~D~~~d~~~a~~~a~~li~~~~v~~iiG~~~s~~~~a~~~~~~~ 97 (206) T 1pea_A 20 TADIERSQRYGALLAV--EQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVER 97 (206) T ss_dssp THHHHHHHHHHHHHHH--HHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH--HHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 2655099999999999--99984299788698999977999999999999999961897699978850888999999997 Q ss_pred CCCEEEECCCCCCCCCCCCEECCCCHH Q ss_conf 553156316766777666402032102 Q gi|254780664|r 361 PSMRFLKTSSLLDFHGEEIVLKTVSGG 387 (536) Q Consensus 361 KnlRil~~~~~~~~~~~~~~~rsi~GG 387 (536) .++=++...........++-+|....- T Consensus 98 ~~ip~i~~~a~~~~~~~~~~f~~~~~~ 124 (206) T 1pea_A 98 ADALLCYPTPYEGFEYSPNIVYGGPAP 124 (206) T ss_dssp TTCEEEECSCCCCCCCCTTEEECSCCG T ss_pred HCCCEEECCCCCCCCCCCCEEEECCCH T ss_conf 397267345577655789878832671 No 63 >>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:1-199) Probab=35.67 E-value=16 Score=16.64 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCCCCCCEEEE Q ss_conf 23333436788100650576 Q gi|254780664|r 221 VKKQEMRYGENPHQKAALYS 240 (536) Q Consensus 221 ~~~~~LRYGENPHQ~Aa~Y~ 240 (536) .+-.+=||||||.---.+|. T Consensus 69 rRP~DgRYGeNPNRLq~yyQ 88 (199) T 1j5w_A 69 RRPTDGRYGENPNRLQRYFQ 88 (199) T ss_dssp ECCC-----CCTTCCSEEEE T ss_pred CCCCCCCCCCCCCHHCEEEE T ss_conf 79998876789303200124 No 64 >>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium} (A:) Probab=35.66 E-value=9.8 Score=18.18 Aligned_cols=60 Identities=23% Similarity=0.327 Sum_probs=40.6 Q ss_pred CCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHH---------CCCCCCCCCCEEEEECCCCCCCCH Q ss_conf 67799996893899729688889999999999876420---------012222348709997366868555 Q gi|254780664|r 430 SNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISA---------QADVKSMTNGSVIASEAFYPFPDG 491 (536) Q Consensus 430 SNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~~~~---------~~~~~~~~~g~vlaSDAFFPF~D~ 491 (536) -||.|++. -+||-|+...-|--+-++|-+|....-. -...+.+++.-.+.||.|-|=.|- T Consensus 105 yna~vyvd--livgtgaseveretaeelakeklraalqvdiadehscvtqfe~klreellssdsfhpdkde 173 (179) T 3fuy_A 105 YNAXVYVD--LIVGTGASEVERETAEELAKEKLRAALQVDIADEHSCVTQFEXKLREELLSSDSFHPDKDE 173 (179) T ss_dssp CEEEEEEE--EEEETTCCHHHHHHHHHHHHHHHHHHTTBTSBCTTSCEEEEEEEEEEECTTCTTCCTTCGG T ss_pred EEEEEEEE--EEEECCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 11589999--9860681377588799999999988752160443017889999999997415676887467 No 65 >>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:1-126) Probab=35.65 E-value=26 Score=15.04 Aligned_cols=12 Identities=8% Similarity=0.326 Sum_probs=4.0 Q ss_pred HHHHHHCCCEEE Q ss_conf 999987597799 Q gi|254780664|r 516 ITVADQHGIAMV 527 (536) Q Consensus 516 I~aan~~gi~m~ 527 (536) ++.|+++++.++ T Consensus 87 vk~a~~~~i~v~ 98 (126) T 1e8g_A 87 VGLANKFSFPLW 98 (126) T ss_dssp HHHHHHHTCCEE T ss_pred HHHHHHCCCCEE T ss_conf 999998799389 No 66 >>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:1-108,A:243-305) Probab=35.47 E-value=27 Score=14.92 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=15.3 Q ss_pred HHHHHHEECCCCHHHHHHHHC--CCCCEEEECCCC Q ss_conf 543111126879899988512--455315631676 Q gi|254780664|r 339 VFTEAIIAPTLSEEAADVLAK--KPSMRFLKTSSL 371 (536) Q Consensus 339 ~F~EvIiAP~f~~eAleiL~~--KKnlRil~~~~~ 371 (536) ..-=+||+|.-.+...+.+++ +.++.++.+... T Consensus 61 ~vdGIii~p~d~~~~~~~i~~a~~~gIPVV~id~~ 95 (171) T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSG 95 (171) T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 99999996787377899999999869929998167 No 67 >>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} (A:1-154) Probab=35.09 E-value=28 Score=14.88 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=34.7 Q ss_pred CEEEEEECCEEEEECCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEE Q ss_conf 779999689389972968888-999999999987642001222234870999736686855589999719959993 Q gi|254780664|r 431 NAVVYAKDGRTVGIGSGQTSR-VDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQ 505 (536) Q Consensus 431 NAIv~ak~~~tiGiGaGQ~sR-Vda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~ie~aa~~Gi~aIiq 505 (536) =.=||++++.+|+.|..++.. -++...+...|..............|+++- --..|=+-+...+..+||+-||- T Consensus 38 VGAViV~~~~vi~~g~n~~~~~~~~~~~~e~~a~~~~~~~~~~~~~~~~tly-~T~ePC~mCa~ai~~agI~rVv~ 112 (154) T 2hxv_A 38 VGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGEDLRGATLIVTLEPC-DHHGKTPPCTDLIIESGIKTVVI 112 (154) T ss_dssp CEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCC-CSCSSSCCHHHHHHHHTCCEEEE T ss_pred EEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC-CCCCCCCHHHHHHHHCCCCEEEE T ss_conf 8999998998999982899998689999999998747676787899977864-43556520666788617999999 No 68 >>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} (A:) Probab=34.70 E-value=18 Score=16.28 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=54.2 Q ss_pred HHEECCCCHHHHHHHH---CCCCCEEEECCC--CCCCCCCCC-EECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 1112687989998851---245531563167--667776664-0203210223101233453100012467778688988 Q gi|254780664|r 343 AIIAPTLSEEAADVLA---KKPSMRFLKTSS--LLDFHGEEI-VLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELR 416 (536) Q Consensus 343 vIiAP~f~~eAleiL~---~KKnlRil~~~~--~~~~~~~~~-~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~pt~~e~~ 416 (536) +|||.+|++|||..|- .|..++++.++. +-+.....+ ++--+.||.++-+. ... ++.-++. . T Consensus 75 lIiAedv~~eaL~~Li~N~~~g~l~v~aVkaPg~G~~rk~~L~DiAi~TG~~vi~~~-~g~---~l~~~~~--------~ 142 (203) T 1kid_A 75 LIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE-IGM---ELEKATL--------E 142 (203) T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGG-GTC---CGGGCCG--------G T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEECHH-CCC---CCCCCCH--------H T ss_conf 999662158899999864312674235632888776689999999998399987532-077---6232888--------7 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 899999986005667799996893899729688889999999999876 Q gi|254780664|r 417 DMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHN 464 (536) Q Consensus 417 dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~ 464 (536) + .-+-.-|.+.|+..++=-|.|....|.+-..-+.+..+ T Consensus 143 ~---------LG~a~~v~vtkd~T~i~~g~g~~~~i~~Ri~~l~~~~~ 181 (203) T 1kid_A 143 D---------LGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIE 181 (203) T ss_dssp G---------CEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHH T ss_pred H---------CCEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHH T ss_conf 8---------88022899827855997488999999999999999999 No 69 >>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250) Probab=34.51 E-value=22 Score=15.68 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=23.0 Q ss_pred CCHHHHHHHHHHCCCEEE-EEHH-------HHHHHHHCCCCEEEHHHHCCCCHHC Q ss_conf 686999999998799999-9427-------6899998899517946534881651 Q gi|254780664|r 27 TGVVEFASRLLSRGIKII-STGG-------TCQLLEEEGIPVTSVFDITKFPEIM 73 (536) Q Consensus 27 tgl~~la~~L~~~g~~ii-sTgG-------Ta~~l~~~gi~v~~Vs~~TgfpEil 73 (536) .+..+..+.|.+.|+.++ .|++ +.+.|++.|+++..-.-+|..|+++ T Consensus 22 ~~~~e~i~~l~~~G~~~~i~Tn~s~~~~~~~~~~l~~~gi~~~~~~~~~~~p~~~ 76 (144) T 2c4n_A 22 PGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSSPWII 76 (144) T ss_dssp TTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCGGGEEEHSTHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEECCHHHHHH T ss_conf 2199999999977995899928998998999755431246775210221525777 No 70 >>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} (A:1-136,A:285-357) Probab=34.48 E-value=28 Score=14.81 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=22.1 Q ss_pred HHHHHHHHHEECCCCHHHHHH--HHCCCCCEEEEC Q ss_conf 886543111126879899988--512455315631 Q gi|254780664|r 336 VIKVFTEAIIAPTLSEEAADV--LAKKPSMRFLKT 368 (536) Q Consensus 336 I~~~F~EvIiAP~f~~eAlei--L~~KKnlRil~~ 368 (536) +.+.-+.+|+.|..+..+..+ +.++.|+=++.. T Consensus 80 ~~~~~v~~iiGp~~s~~~~ava~~a~~~~iP~is~ 114 (209) T 1jdp_A 80 ARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSA 114 (209) T ss_dssp TTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEES T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 24578089999987089999999999749839954 No 71 >>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} (A:30-395) Probab=33.24 E-value=30 Score=14.67 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=17.9 Q ss_pred CHHHHHHHHHCCCCCEEEE---EEECCCHHHHH Q ss_conf 9899999997799841499---99488889973 Q gi|254780664|r 94 NPAHMKFMQDHELESIDLV---VVNLYPFEESF 123 (536) Q Consensus 94 ~~~~~~~l~~~~i~~IDlV---vvNLYPF~~~v 123 (536) .++..+.++.+|+..|-+= ..+.|++.+.+ T Consensus 32 ~~~~~~~l~~~g~~~iR~~gg~~~~~~~~~~~~ 64 (366) T 2c7f_A 32 RKDVIELVKELNVPIIRYPGGNFVSNYFWEDGV 64 (366) T ss_dssp BHHHHHHHHHHCCSEEEESCSTTGGGCCGGGGS T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCEECCCC T ss_conf 899999999649987975997545755306785 No 72 >>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} (A:1-222,A:386-430) Probab=33.08 E-value=30 Score=14.66 Aligned_cols=104 Identities=12% Similarity=0.044 Sum_probs=65.5 Q ss_pred EEEEEEEE---ECCCCHHHHHHHHHHCCCE--EEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 36989987---5456869999999987999--999427689999889951794653488165198553237155535533 Q gi|254780664|r 16 VKTALISV---HNKTGVVEFASRLLSRGIK--IISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 16 ikrALiSV---~dKtgl~~la~~L~~~g~~--iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) ++-.+++. ++-.-+..||+.|.+.|.+ ++++..-...++..|++...+.. .+++..............--... T Consensus 8 ~~Illv~~p~~GHi~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 85 (267) T 2iyf_A 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHS--TLPGPDADPEAWGSTLLDNVEPF 85 (267) T ss_dssp CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCC--CSCCTTSCGGGGCSSHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEEECC--CCCCCCCCHHHHHHHHHHHHHHH T ss_conf 8899938852638999999999999789989999681066678866985788357--78732235134566789999999 Q ss_pred C-CCCHHHHHHHHHCCCCCEEEEEEECCCHHH Q ss_conf 0-889899999997799841499994888899 Q gi|254780664|r 91 I-RDNPAHMKFMQDHELESIDLVVVNLYPFEE 121 (536) Q Consensus 91 ~-r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~ 121 (536) . .-.....+.++.+.-...|+||.....+.- T Consensus 86 ~~~~~~~~~~l~~~l~~~~~d~Iv~d~~~~~~ 117 (267) T 2iyf_A 86 LNDAIQALPQLADAYADDIPDLVLHDITSYPA 117 (267) T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEETTCHHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 99999999999999855598299975754067 No 73 >>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} (A:) Probab=33.00 E-value=30 Score=14.65 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=34.7 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHEECC--CCHHHHHHHHCCCCCEEEEC Q ss_conf 045554275421457878865431111268--79899988512455315631 Q gi|254780664|r 319 GGIIAFNREVDQEVAKEVIKVFTEAIIAPT--LSEEAADVLAKKPSMRFLKT 368 (536) Q Consensus 319 GGIIa~N~~vd~~~A~~I~~~F~EvIiAP~--f~~eAleiL~~KKnlRil~~ 368 (536) +.+|.-...=+.+++..+.+..+-+-+-|+ ..+...+++++=+--|+|.- T Consensus 143 ~~~i~H~f~g~~~~~~~~~~~g~~~si~~~~~~~~~~~~~~~~~~~dril~e 194 (254) T 3gg7_A 143 GTPILHWYSGSVTELRRAISLGCWFSVGPTMVRTQKGAALIRSMPRDRVLTE 194 (254) T ss_dssp EEEEEETCCSCHHHHHHHHHTTCEEEECHHHHTSHHHHHHHHHSCGGGEEEC T ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 6420123133410444430368611145112211678898986023048854 No 74 >>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:1-122,A:256-317) Probab=32.94 E-value=30 Score=14.64 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=28.0 Q ss_pred CCHHHHHHHHHHHHCCCCCCC---EEEEECCCCCHHHHH----H-HHHHHHHHHEECCCCHHHHHHHH Q ss_conf 201689999998533213200---455542754214578----7-88654311112687989998851 Q gi|254780664|r 299 ADTLVEAYRRALSCDPISAFG---GIIAFNREVDQEVAK----E-VIKVFTEAIIAPTLSEEAADVLA 358 (536) Q Consensus 299 ~~~~~~Ay~~A~~~DP~SAFG---GIIa~N~~vd~~~A~----~-I~~~F~EvIiAP~f~~eAleiL~ 358 (536) |.....+++.|.+-=--.-=| -++..+...|...|. . |.+.=+.+|+.|..+..++.+.. T Consensus 22 G~~~~~g~~lAv~~iNggi~G~~ielv~~D~~~~~~~a~~~a~~li~~~~v~~iiG~~~S~~~~a~~~ 89 (184) T 3i09_A 22 GQGGLEAIKXAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWXDRGGLDLLVGGTNSATALSXNQ 89 (184) T ss_dssp HHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH T ss_conf 88999999999999679879978899995599998999999999996289769995055167778777 No 75 >>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} (A:189-373) Probab=32.81 E-value=18 Score=16.21 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=56.5 Q ss_pred HHEECCCCHHHHHHH---HCCCCCEEEECC--CCCCCCCCCC-EECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 111268798999885---124553156316--7667776664-0203210223101233453100012467778688988 Q gi|254780664|r 343 AIIAPTLSEEAADVL---AKKPSMRFLKTS--SLLDFHGEEI-VLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELR 416 (536) Q Consensus 343 vIiAP~f~~eAleiL---~~KKnlRil~~~--~~~~~~~~~~-~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~pt~~e~~ 416 (536) +|||.+++.|||..| +.|..++++.++ .+-+.....+ ++--+.||.++-+.-. . ++.-++.. T Consensus 59 lIiAedv~~eaL~~Li~N~~~g~~~v~aVkaPgfG~~rk~~L~DiAi~TG~~vi~~~~g-~---~le~~~~~-------- 126 (185) T 1kp8_A 59 LIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG-M---ELEKATLE-------- 126 (185) T ss_dssp EEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGT-C---CSTTCCTT-------- T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCEEECCCCC-C---CHHHCCHH-------- T ss_conf 99955670999999999777513342434176304899999999999749999522034-7---64447998-------- Q ss_pred HHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 899999986005667799996893899729688889999999999876 Q gi|254780664|r 417 DMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHN 464 (536) Q Consensus 417 dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~~ 464 (536) -.-+-.-|++.|+..++=-|.|....|.+-..-+.+..+ T Consensus 127 ---------~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Ri~~l~~~~~ 165 (185) T 1kp8_A 127 ---------DLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIE 165 (185) T ss_dssp ---------TSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHH T ss_pred ---------HCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHH T ss_conf ---------879726999658761796177868889889999999987 No 76 >>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Thermus thermophilus} (A:92-177) Probab=32.51 E-value=18 Score=16.25 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=9.3 Q ss_pred HCCCEEEEEHHHHHHHHHCCCCEE Q ss_conf 879999994276899998899517 Q gi|254780664|r 38 SRGIKIISTGGTCQLLEEEGIPVT 61 (536) Q Consensus 38 ~~g~~iisTgGTa~~l~~~gi~v~ 61 (536) ..=++|.|||.| |++||+.+. T Consensus 58 D~IvDiv~TG~T---Lr~NgL~~i 78 (86) T 1ve4_A 58 DAVVDVVQTGAT---LRAAGLVEV 78 (86) T ss_dssp SEEEEEESSSHH---HHHTTCEEE T ss_pred EEEEEEECCHHH---HHHCCCEEE T ss_conf 266653026889---998699643 No 77 >>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* (A:1-351) Probab=32.07 E-value=31 Score=14.54 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=9.7 Q ss_pred EEEEECCCCCCHHHHHHHH Q ss_conf 3899729688889999999 Q gi|254780664|r 440 RTVGIGSGQTSRVDSTRFA 458 (536) Q Consensus 440 ~tiGiGaGQ~sRVda~~iA 458 (536) -++.||.--.-++.....+ T Consensus 313 lLLNvgP~~dG~i~~~~~~ 331 (351) T 2wvv_A 313 MVVNFGPQADGDFRPEEKA 331 (351) T ss_dssp EEEEECCCTTSSCCHHHHH T ss_pred EEEECCCCCCCCCCHHHHH T ss_conf 9996287868868889999 No 78 >>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} (A:) Probab=31.56 E-value=32 Score=14.48 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=70.9 Q ss_pred CCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHH----CCCCEEEH-HHHCCCCHHCCCCCCCCCCHHHH Q ss_conf 77613698998754568699999999879999994276899998----89951794-65348816519855323715553 Q gi|254780664|r 12 GEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEE----EGIPVTSV-FDITKFPEIMGGRVKTLHPKIYG 86 (536) Q Consensus 12 ~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~----~gi~v~~V-s~~TgfpEil~GRVKTLHP~I~g 86 (536) .+++=|++||.=..+-==..+|+.|.+.|+.++-++-+...+.+ .+-.+..+ -|++...++ T Consensus 3 ~~l~gk~vlITGas~GIG~aiA~~la~~G~~V~i~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~-------------- 68 (260) T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQW-------------- 68 (260) T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHH-------------- T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHH-------------- T ss_conf 765989899938887899999999998799899997988999999998518707999737999999-------------- Q ss_pred HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCC--CCCHH-HHHHHHC-----CCCCCEEEE Q ss_conf 553308898999999977998414999948888997317653112320023--34346-9998740-----156313530 Q gi|254780664|r 87 GILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENID--IGGPS-MIRAAAK-----NHDYVTILT 158 (536) Q Consensus 87 gIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnID--IGGps-miRAAAK-----N~~~V~Vi~ 158 (536) +.-.+.+ .....+||++|-|--.+...--...+.++.-+.+| .-||- |+|++.+ ++-++..++ T Consensus 69 --------~~~~~~~-~~~~g~iDilinnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~G~Ii~is 139 (260) T 1nff_A 69 --------KAAVDTA-VTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINIS 139 (260) T ss_dssp --------HHHHHHH-HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC T ss_pred --------HHHHHHH-HHHCCCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEC T ss_conf --------9999999-9974999899989999999980239999999999998299999999998877862798775114 Q ss_pred CHHH Q ss_conf 8999 Q gi|254780664|r 159 NPQD 162 (536) Q Consensus 159 dp~d 162 (536) +..- T Consensus 140 S~~~ 143 (260) T 1nff_A 140 SIEG 143 (260) T ss_dssp CGGG T ss_pred CHHH T ss_conf 6554 No 79 >>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} (A:1-111) Probab=30.64 E-value=29 Score=14.77 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=26.3 Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHH-HHHHCCCEEEEEHHHHHHHHHCCCC Q ss_conf 720157788677613698998754568699999-9998799999942768999988995 Q gi|254780664|r 2 DCFHRKDGDHGEIAVKTALISVHNKTGVVEFAS-RLLSRGIKIISTGGTCQLLEEEGIP 59 (536) Q Consensus 2 ~~~~~~~~~~~~~~ikrALiSV~dKtgl~~la~-~L~~~g~~iisTgGTa~~l~~~gi~ 59 (536) ||+-.-..-..--++--.|||=.+-+-+-.+.- .+...+..++.+-+|++.+++.|++ T Consensus 52 Dp~~~~~~~~~~~~iD~VliTH~H~DH~~~~~~~~~~~~~~~v~~~~~~~~~l~~~g~~ 110 (111) T 3kl7_A 52 DPVSEYADYTTFPKADIILITHEHGDHLDPKAIQAVEKSDTEIIANENSQKKLGKGKVL 110 (111) T ss_dssp SCCTTTCCTTSSCCCSEEEECCSSTTTCCHHHHHHHCCTTCEEEECHHHHHHHTCSEEC T ss_pred CCCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCEEEECHHHHHHHHCCEEE T ss_conf 89998776200897788998999823377356456650695698158998764004253 No 80 >>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} (A:1-221,A:381-416) Probab=30.51 E-value=33 Score=14.36 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=33.8 Q ss_pred CCHHHHHHHHHHCCCE--EEEEHHHHHHHHHCCCCEEEHHHH Q ss_conf 6869999999987999--999427689999889951794653 Q gi|254780664|r 27 TGVVEFASRLLSRGIK--IISTGGTCQLLEEEGIPVTSVFDI 66 (536) Q Consensus 27 tgl~~la~~L~~~g~~--iisTgGTa~~l~~~gi~v~~Vs~~ 66 (536) .....||+.|.+.|.+ ++++......+...|++...+... T Consensus 15 ~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~ 56 (257) T 1rrv_A 15 EIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLP 56 (257) T ss_dssp HHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCC T ss_pred HHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCC T ss_conf 999999999998899899996856777898779759986872 No 81 >>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} (A:101-193) Probab=30.48 E-value=16 Score=16.63 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=4.4 Q ss_pred EECCCCHHHHHHH Q ss_conf 1268798999885 Q gi|254780664|r 345 IAPTLSEEAADVL 357 (536) Q Consensus 345 iAP~f~~eAleiL 357 (536) ||-.|..=+-+.| T Consensus 27 VATkyp~i~~~~f 39 (93) T 1h3d_A 27 IATSYPHLLKRYL 39 (93) T ss_dssp EEESCHHHHHHHH T ss_pred EEEHHHHHHHHHH T ss_conf 9742267999999 No 82 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418) Probab=30.04 E-value=33 Score=14.31 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=33.8 Q ss_pred EEEEEEEECCCCHHHHHHHHHHCCCEEEEEH---HHH-------HHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHH Q ss_conf 6989987545686999999998799999942---768-------9999889951794653488165198553237155 Q gi|254780664|r 17 KTALISVHNKTGVVEFASRLLSRGIKIISTG---GTC-------QLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKI 84 (536) Q Consensus 17 krALiSV~dKtgl~~la~~L~~~g~~iisTg---GTa-------~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I 84 (536) ||+.|. .|-+-...++++|.++|.+++..+ ++. +.|++.+.+...|-+-+.+.|+.+ ++|.+.|-+ T Consensus 4 Krv~i~-gd~~~~~~l~~~l~ElGm~vv~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~el~~-~i~~~~pDl 79 (109) T 1mio_B 4 KKVALL-GDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQ-WIKNEGVDL 79 (109) T ss_dssp CEEEEE-ECHHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHH-HHHHSCCSE T ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH-HHHHCCCCE T ss_conf 879998-8818899999999984990148872689777789999999865898878997999999999-997449999 No 83 >>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} (A:108-202) Probab=30.02 E-value=33 Score=14.31 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=24.6 Q ss_pred EEEEEEEECCCCHHHHHHHHHHCCCEEEEEHH Q ss_conf 69899875456869999999987999999427 Q gi|254780664|r 17 KTALISVHNKTGVVEFASRLLSRGIKIISTGG 48 (536) Q Consensus 17 krALiSV~dKtgl~~la~~L~~~g~~iisTgG 48 (536) |=||++-|....-..+..+|.+.|+++++..| T Consensus 3 rial~TPY~~~v~~~~~~~~~~~G~eV~~~~~ 34 (95) T 2dgd_A 3 KLWIGTPYIKERTLEEVEWWRNKGFEIVGYDG 34 (95) T ss_dssp EEEEEESSCHHHHHHHHHHHHTTTCEEEEEEE T ss_pred CEEEECCCCHHHHHHHHHHHHHCCEEEEEECC T ss_conf 72885577706579999999967905853002 No 84 >>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A {Thermomonospora fusca} (A:) Probab=29.90 E-value=34 Score=14.29 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=14.9 Q ss_pred HHHHHHHHHCCCCCEEEEEEECC Q ss_conf 89999999779984149999488 Q gi|254780664|r 95 PAHMKFMQDHELESIDLVVVNLY 117 (536) Q Consensus 95 ~~~~~~l~~~~i~~IDlVvvNLY 117 (536) +.+++.|+++|+..|-+-+..-. T Consensus 35 ~~~l~~~k~~G~N~vR~~~~~~~ 57 (302) T 1bqc_A 35 TQAFADIKSHGANTVRVVLSNGV 57 (302) T ss_dssp TTHHHHHHHTTCSEEEEEECCSS T ss_pred HHHHHHHHHCCCCEEEEECCCCC T ss_conf 99999999769987999121565 No 85 >>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A (A:) Probab=29.86 E-value=30 Score=14.63 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=29.3 Q ss_pred EEEEECCCCCHHHHHHH---HHHHHHHHEECCCCHHHHHHH-H--CCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCC Q ss_conf 45554275421457878---865431111268798999885-1--24553156316766777666402032102231012 Q gi|254780664|r 320 GIIAFNREVDQEVAKEV---IKVFTEAIIAPTLSEEAADVL-A--KKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTR 393 (536) Q Consensus 320 GIIa~N~~vd~~~A~~I---~~~F~EvIiAP~f~~eAleiL-~--~KKnlRil~~~~~~~~~~~~~~~rsi~GG~LvQ~~ 393 (536) -.+++|..=..+.+... .+...+.....+.+++.++-. . ..+..=++.... -.+.+.|-++.|.+ T Consensus 137 vni~~~y~gr~eI~~a~r~l~~~~~~~~~~~~i~~~~i~~~l~~~~~P~pDLlIrtg---------g~~rls~Fl~WQ~~ 207 (245) T 2d2r_A 137 QVLALNYGSKNELSRAFKSLLESPPSNISLLESLENEISNRLDTRNLPEVDLLLRTG---------GEMRLSNFLLWQSS 207 (245) T ss_dssp EEEECSCCHHHHHHHHHHHHHHSCCTTGGGCSCCHHHHHTTSTTTTSCCCSEEEECS---------SCCCCTTSSTTTTT T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECC---------CCCCCCCCHHHHHC T ss_conf 224305671078999999998632001584877756788753456788963899568---------97315561334022 Q ss_pred CC Q ss_conf 33 Q gi|254780664|r 394 DN 395 (536) Q Consensus 394 D~ 395 (536) .. T Consensus 208 ~t 209 (245) T 2d2r_A 208 YA 209 (245) T ss_dssp TC T ss_pred CE T ss_conf 45 No 86 >>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} (A:114-162) Probab=29.13 E-value=34 Score=14.20 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=23.3 Q ss_pred EEEEEEEECCC---CHHHHHHHHHHCCCEEEE Q ss_conf 69899875456---869999999987999999 Q gi|254780664|r 17 KTALISVHNKT---GVVEFASRLLSRGIKIIS 45 (536) Q Consensus 17 krALiSV~dKt---gl~~la~~L~~~g~~iis 45 (536) |.-+|-.|..| |+..|++.|.++|++++. T Consensus 11 ~~v~VG~S~RTn~~gv~~l~~~l~~~g~~vi~ 42 (49) T 1h70_A 11 DHFYIGESARTNAEGARQMIAILEKHGLSGSV 42 (49) T ss_dssp TEEEEEECSSSCHHHHHHHHHHHHHTTCEEEE T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCCEEEE T ss_conf 80899994056378899999988754866999 No 87 >>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} (A:1-121,A:255-329) Probab=28.76 E-value=35 Score=14.16 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHEECCCCHHHHHHHH Q ss_conf 8788654311112687989998851 Q gi|254780664|r 334 KEVIKVFTEAIIAPTLSEEAADVLA 358 (536) Q Consensus 334 ~~I~~~F~EvIiAP~f~~eAleiL~ 358 (536) +.+.+.=+-+|+-|..+..++.+.. T Consensus 63 ~~li~~~v~~iig~~~s~~~~a~~~ 87 (196) T 1usg_A 63 NKIVNDGIKYVIGHLCSSSTQPASD 87 (196) T ss_dssp HHHHHTTCCEEECCSSHHHHHHHHH T ss_pred HHHHHCCCCEEECCCCCCCCHHHHH T ss_conf 9998669953544633564113555 No 88 >>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:1-95) Probab=28.66 E-value=35 Score=14.15 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=6.6 Q ss_pred HHHHHHHCCCEEEECCC Q ss_conf 99999875977997478 Q gi|254780664|r 515 AITVADQHGIAMVFTGI 531 (536) Q Consensus 515 vI~aan~~gi~m~fTg~ 531 (536) +++.|+++++.++.-|- T Consensus 58 vv~~~~~~~i~v~~rgg 74 (95) T 1zr6_A 58 AVQCGLDAGVQISAKGG 74 (95) T ss_dssp HHHHHHHHTCCEEEESS T ss_pred HHHHHHHCCCEEEEECC T ss_conf 99999987975999869 No 89 >>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I (I:) Probab=28.56 E-value=35 Score=14.13 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=18.4 Q ss_pred EECCCCCCHHHHHHHHHHHHHH Q ss_conf 9729688889999999999876 Q gi|254780664|r 443 GIGSGQTSRVDSTRFAAIKAHN 464 (536) Q Consensus 443 GiGaGQ~sRVda~~iA~~KA~~ 464 (536) --|.|.+...+|+++|+-||-- T Consensus 64 V~GGG~~gQa~Air~aiaraL~ 85 (138) T 3jyv_I 64 VTGGGHVSQVYAIRQAIAKGLV 85 (138) T ss_dssp EESCCTTTHHHHHHHHHHHTTT T ss_pred EECCCHHHHHHHHHHHHHHHHH T ss_conf 9678642798699999999999 No 90 >>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:1-104,A:238-280) Probab=28.23 E-value=36 Score=14.10 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=22.4 Q ss_pred CHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEECCCC Q ss_conf 5589999719959-993898779889999998759779974785 Q gi|254780664|r 490 DGIVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFTGIR 532 (536) Q Consensus 490 D~ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fTg~R 532 (536) +-++.+.+.|+.+ |+.|-++-..++.++.+.+.|++.++-..+ T Consensus 48 ~~Le~li~~~vDGIIi~~~d~~~~~~~i~~l~~~gIPVV~vd~~ 91 (147) T 2h3h_A 48 QMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTD 91 (147) T ss_dssp HHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 99999997699999997250344248999987435624999335 No 91 >>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP} (A:367-454) Probab=27.96 E-value=29 Score=14.74 Aligned_cols=12 Identities=50% Similarity=0.697 Sum_probs=6.2 Q ss_pred HHHHHHHCCCCC Q ss_conf 999885124553 Q gi|254780664|r 352 EAADVLAKKPSM 363 (536) Q Consensus 352 eAleiL~~KKnl 363 (536) +|-.+|..|+|- T Consensus 38 QA~~Vl~~k~Np 49 (88) T 3e2d_A 38 QAKNVLASKPNP 49 (88) T ss_dssp HHHHHHCEEECT T ss_pred HHHHHHHCCCCC T ss_conf 887765223342 No 92 >>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} (A:) Probab=27.91 E-value=36 Score=14.06 Aligned_cols=115 Identities=14% Similarity=-0.001 Sum_probs=61.6 Q ss_pred CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHH---HHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHH Q ss_conf 7613698998754568699999999879999994276899---9988995179465348816519855323715553553 Q gi|254780664|r 13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQL---LEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGIL 89 (536) Q Consensus 13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~---l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL 89 (536) +++=|.|||.=--+-==.++|+.|.+.|.+++-++-+.+. .++.|..+..+ |+|...++ T Consensus 3 ~l~gkvalITGassGIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~-Dvt~~~~i----------------- 64 (256) T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQV-DLEDERER----------------- 64 (256) T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEEC-CTTCHHHH----------------- T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEE-ECCCHHHH----------------- T ss_conf 889988999489878999999999987999999968878999998759939998-58999999----------------- Q ss_pred HCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCC---CHHHHHHHHCCC Q ss_conf 30889899999997799841499994888899731765311232002334---346999874015 Q gi|254780664|r 90 SIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIG---GPSMIRAAAKNH 151 (536) Q Consensus 90 ~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIG---GpsmiRAAAKN~ 151 (536) +.-.+++.+ .+.+||++|.|--.....-....+.++.-+.+++- ---+++++++.. T Consensus 65 -----~~~~~~~~~-~~G~iD~linnAg~~~~~~~~~~~~e~~~~~~~~n~~~~~~~~~~~~~~~ 123 (256) T 2d1y_A 65 -----VRFVEEAAY-ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREM 123 (256) T ss_dssp -----HHHHHHHHH-HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHH T ss_pred -----HHHHHHHHH-HCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf -----999999998-48997199989999999881129999999999973268877777653011 No 93 >>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} (A:) Probab=27.51 E-value=37 Score=14.01 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.5 Q ss_pred ECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 389877988999999875977997 Q gi|254780664|r 505 QPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 505 qPGGSirD~evI~aan~~gi~m~f 528 (536) ++|.+.|-++..+.|.+|++.++- T Consensus 178 ~dG~~~~~~~~~~fA~~h~l~~i~ 201 (217) T 1g57_A 178 DDGTMARAPECIEFANKHNMALVT 201 (217) T ss_dssp TTSSBCCHHHHHHHHHHTTCEEEE T ss_pred CCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 988715889999999984997998 No 94 >>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} (A:1-119,A:270-304) Probab=27.19 E-value=37 Score=13.97 Aligned_cols=13 Identities=0% Similarity=-0.189 Sum_probs=5.2 Q ss_pred HHHHHHCCCCCCE Q ss_conf 9998740156313 Q gi|254780664|r 143 MIRAAAKNHDYVT 155 (536) Q Consensus 143 miRAAAKN~~~V~ 155 (536) +++.+.++-.+|. T Consensus 74 ~~~~al~aG~~Vl 86 (154) T 1f06_A 74 EQAPKFAQFACTV 86 (154) T ss_dssp HHHHHHTTTSEEE T ss_pred HHHHHHHCCCCEE T ss_conf 9999998699899 No 95 >>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} (A:179-224) Probab=27.08 E-value=37 Score=13.96 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=13.4 Q ss_pred HHHEECCCCHH-HHHHHHC Q ss_conf 11112687989-9988512 Q gi|254780664|r 342 EAIIAPTLSEE-AADVLAK 359 (536) Q Consensus 342 EvIiAP~f~~e-AleiL~~ 359 (536) +|||.|+.++| |-++|-+ T Consensus 8 dviV~PsV~~eea~~~FP~ 26 (46) T 1prx_A 8 SVMVLPTIPEEEAKKLFPK 26 (46) T ss_dssp CEEECTTSCHHHHHHHCTT T ss_pred CEEECCCCCHHHHHHHCCC T ss_conf 2362899997999986538 No 96 >>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, cytoplasm, histidine, magnesium; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} (A:91-184) Probab=27.04 E-value=23 Score=15.49 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=14.3 Q ss_pred HHEECCCCHHHHHHHHCC-CCCEEEECC Q ss_conf 111268798999885124-553156316 Q gi|254780664|r 343 AIIAPTLSEEAADVLAKK-PSMRFLKTS 369 (536) Q Consensus 343 vIiAP~f~~eAleiL~~K-KnlRil~~~ 369 (536) .-||-.|-.-+-+.|+++ .+..++.+. T Consensus 26 ~RIATkyp~i~~~~f~~~gi~~~iv~l~ 53 (94) T 2vd3_A 26 AVIATEFPGITENYLREHGIDAEVVELT 53 (94) T ss_dssp CEEEESCHHHHHHHHHHTTCCCEEEECS T ss_pred CEEEECHHHHHHHHHHHCCCEEEEEEEC T ss_conf 4897412668899997576027999804 No 97 >>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae} (A:1-200,A:368-384) Probab=26.97 E-value=37 Score=13.94 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=32.9 Q ss_pred CHHHHHHHHHHCCCE--EEEEHHHHHHHHHCCCCEEEHHHHC Q ss_conf 869999999987999--9994276899998899517946534 Q gi|254780664|r 28 GVVEFASRLLSRGIK--IISTGGTCQLLEEEGIPVTSVFDIT 67 (536) Q Consensus 28 gl~~la~~L~~~g~~--iisTgGTa~~l~~~gi~v~~Vs~~T 67 (536) =...+++.|.+.|.+ ++++......++..|++...+.... T Consensus 16 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~ 57 (217) T 2p6p_A 16 ALAPLATAARNAGHQVVMAANQDMGPVVTGVGLPAVATTDLP 57 (217) T ss_dssp HHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEESCSSC T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCH T ss_conf 999999999988998999918526667876697577448740 No 98 >>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264) Probab=26.97 E-value=10 Score=17.96 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=5.8 Q ss_pred HHHHHHHHHCCCEE Q ss_conf 99999999879999 Q gi|254780664|r 30 VEFASRLLSRGIKI 43 (536) Q Consensus 30 ~~la~~L~~~g~~i 43 (536) .++.+.|.+.|+.+ T Consensus 27 ~e~l~~l~~~G~~~ 40 (154) T 3epr_A 27 ERFIERLQEKGIPY 40 (154) T ss_dssp HHHHHHHHHHTCCE T ss_pred HHHHHHHHHCCCCE T ss_conf 99999999879988 No 99 >>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii RH} PDB: 2o50_A (A:) Probab=26.68 E-value=38 Score=13.91 Aligned_cols=135 Identities=12% Similarity=-0.024 Sum_probs=73.1 Q ss_pred CCCEEEEEEEEE-CCCCH-HHHHHHHHHCCCEEEEEHHHHHHHHHCCCC---------------EEEHHHHCCCCHHCCC Q ss_conf 761369899875-45686-999999998799999942768999988995---------------1794653488165198 Q gi|254780664|r 13 EIAVKTALISVH-NKTGV-VEFASRLLSRGIKIISTGGTCQLLEEEGIP---------------VTSVFDITKFPEIMGG 75 (536) Q Consensus 13 ~~~ikrALiSV~-dKtgl-~~la~~L~~~g~~iisTgGTa~~l~~~gi~---------------v~~Vs~~TgfpEil~G 75 (536) +++=|.|||.=- .-+|| ..+|+.|.+.|..++-++-+-..+.+.--. ..............+- T Consensus 6 ~l~gkvalVTGaagssGIG~aiA~~la~~Ga~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315) T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315) T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 56999899979999987999999999987999999837603324566666555678887665545301671565000464 Q ss_pred CCC--CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHH--CCCCCHHHHHHCCCCCCHHHHHHH Q ss_conf 553--237155535533088989999999779984149999488889973--176531123200233434699987 Q gi|254780664|r 76 RVK--TLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESF--CREDDYYTMVENIDIGGPSMIRAA 147 (536) Q Consensus 76 RVK--TLHP~I~ggIL~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v--~~~~~~~~~IEnIDIGGpsmiRAA 147 (536) ... +.+......-+...+.-.+..+.......+||++|.|--.+.... ....+..+-...|++.++..+.-. T Consensus 86 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLVnNAG~~~~~~~~~~~~~~~~~~~~in~~~~~~~~~~ 161 (315) T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLL 161 (315) T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCC T ss_conf 0222010003455520138999999999999849986676631466555673443346777776530223112323 No 100 >>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:1-112) Probab=26.63 E-value=38 Score=13.90 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=9.3 Q ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 999389877988999999875977997 Q gi|254780664|r 502 AVIQPGGSVRDSEAITVADQHGIAMVF 528 (536) Q Consensus 502 aIiqPGGSirD~evI~aan~~gi~m~f 528 (536) +||.|.----=.++++.|+++++.++. T Consensus 59 ~Vv~P~s~~dV~~iv~~a~~~~~pv~~ 85 (112) T 1wvf_A 59 AAVTATTVEQVQGVVKICNEHKIPIWT 85 (112) T ss_dssp EEEECCSHHHHHHHHHHHHHHTCCEEE T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEE T ss_conf 799569899999999999987980999 No 101 >>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} (A:193-374) Probab=26.56 E-value=17 Score=16.53 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=51.4 Q ss_pred HHEECCCCHHHHHHHH-C--CCCCEEEECC--CCCCCCCCCC-EECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 1112687989998851-2--4553156316--7667776664-0203210223101233453100012467778688988 Q gi|254780664|r 343 AIIAPTLSEEAADVLA-K--KPSMRFLKTS--SLLDFHGEEI-VLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELR 416 (536) Q Consensus 343 vIiAP~f~~eAleiL~-~--KKnlRil~~~--~~~~~~~~~~-~~rsi~GG~LvQ~~D~~~~~~~~~vVT~~~pt~~e~~ 416 (536) +|||.+++.|||..|- . |..++++-++ .+-+.....+ ++--+.||.++-+.- .. +++-++ T Consensus 56 lIiAedv~~eaL~~li~N~l~g~~~v~aVkaPgfGd~rk~~L~DiAilTG~~vi~~~~-g~---~l~~~~---------- 121 (182) T 1iok_A 56 LIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDL-GM---KLENVT---------- 121 (182) T ss_dssp EEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC----------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEECHHH-HC---CHHHCC---------- T ss_conf 8999988999999999998754374899937885399999999988872989833032-04---621199---------- Q ss_pred HHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 89999998600566779999689389972968888999999999987 Q gi|254780664|r 417 DMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAH 463 (536) Q Consensus 417 dL~FA~kv~K~vkSNAIv~ak~~~tiGiGaGQ~sRVda~~iA~~KA~ 463 (536) ..-.-+..-|++.|+..++=-|.|....|..-.--+.+.. T Consensus 122 -------~~~LG~a~~v~vtkd~T~i~~g~g~~~~i~~Ri~~l~~~~ 161 (182) T 1iok_A 122 -------IDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQI 161 (182) T ss_dssp -------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHHHHHHHH T ss_pred -------HHHCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHH T ss_conf -------8882870699974665268537785888988899999888 No 102 >>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284) Probab=26.47 E-value=38 Score=13.88 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=6.9 Q ss_pred HHHHHHCCCCEEEEC Q ss_conf 899997199599938 Q gi|254780664|r 492 IVEAIKAGVTAVIQP 506 (536) Q Consensus 492 ie~aa~~Gi~aIiqP 506 (536) |..|.++|+++|.-. T Consensus 117 i~~A~~~G~~~i~v~ 131 (162) T 2hx1_A 117 ILGGNKFGLDTALVL 131 (162) T ss_dssp HHHHHHHTCEEEEES T ss_pred HHHHHHCCCCEEEEC T ss_conf 999998799899989 No 103 >>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural genomics consortium, SGC; HET: NAD; 1.84A {Homo sapiens} (A:) Probab=26.02 E-value=39 Score=13.82 Aligned_cols=111 Identities=13% Similarity=0.021 Sum_probs=62.4 Q ss_pred CCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCC--EEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 76136989987545686999999998799999942768999988995--1794653488165198553237155535533 Q gi|254780664|r 13 EIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIP--VTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~--v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) +++=|+|||.=.-..==..+|+.|.+.|.+++-++-+.+.+.+.--. ..++++-.. T Consensus 3 ~l~gk~vlITGassGIG~aia~~la~~G~~V~i~~r~~~~~~~~~~~~~~~d~~~~~~---------------------- 60 (246) T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVT---------------------- 60 (246) T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTT---------------------- T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEECCCC---------------------- T ss_conf 8699889996888889999999999869999999799899999997049833311100---------------------- Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCC---CCCHHHHHHHHC Q ss_conf 08898999999977998414999948888997317653112320023---343469998740 Q gi|254780664|r 91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENID---IGGPSMIRAAAK 149 (536) Q Consensus 91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnID---IGGpsmiRAAAK 149 (536) ......+..+ ...++|++|.|-+..........+.++.-+.++ +|---|+|++.+ T Consensus 61 ---~~~~~~~~~~-~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p 118 (246) T 2ag5_A 61 ---KKKQIDQFAN-EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLP 118 (246) T ss_dssp ---CHHHHHHHHH-HCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHH T ss_pred ---CHHHHHHHHC-CEECCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHCC T ss_conf ---0134332101-101144336115776888835599999999998761125799987460 No 104 >>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} (A:) Probab=25.79 E-value=36 Score=14.10 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=28.1 Q ss_pred HHEECCCCHHHHHHH-H--CCCCCEEEECC--CCCCCCCCCC-EECCCCHHHHHCC Q ss_conf 111268798999885-1--24553156316--7667776664-0203210223101 Q gi|254780664|r 343 AIIAPTLSEEAADVL-A--KKPSMRFLKTS--SLLDFHGEEI-VLKTVSGGILVQT 392 (536) Q Consensus 343 vIiAP~f~~eAleiL-~--~KKnlRil~~~--~~~~~~~~~~-~~rsi~GG~LvQ~ 392 (536) +|||.+++.|||..| - .|..++++.++ .+-+.+...+ ++--+.||.++-+ T Consensus 57 lIIAedv~~eaL~~Li~N~~~g~~~v~aVkaPgfG~~rk~~L~DiAi~TG~~vi~~ 112 (145) T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISE 112 (145) T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECT T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEECC T ss_conf 99967667899999999986288359999599986778999987787609745524 No 105 >>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387) Probab=25.70 E-value=39 Score=13.78 Aligned_cols=87 Identities=6% Similarity=-0.010 Sum_probs=53.9 Q ss_pred CCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCEEEEECCCCC--HHHHHHHHHHHHH Q ss_conf 1200116776424556727999615686565452016899999985332-132004555427542--1457878865431 Q gi|254780664|r 266 DLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDP-ISAFGGIIAFNREVD--QEVAKEVIKVFTE 342 (536) Q Consensus 266 D~daA~~lv~ef~~~~~Pa~vIvKH~NPCGvA~~~~~~~Ay~~A~~~DP-~SAFGGIIa~N~~vd--~~~A~~I~~~F~E 342 (536) -+.+..+++.++. .-.++||-..++.| ....+++++++..-- .=++-..+.++.... ......|...=.+ T Consensus 5 qa~ala~~l~~~g---~kkVaII~~d~~yG----~~~~~~f~~~l~~~G~~V~~~~~i~~~~~~~d~~~~i~kik~a~pd 77 (200) T 3i45_A 5 QAAMLAAEAAKLP---ITRWATIAPNYEYG----QSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPE 77 (200) T ss_dssp HHHHHHHHHTTSS---CCEEEEECCSSHHH----HHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCS T ss_pred HHHHHHHHHHHCC---CCEEEECCCCCHHH----HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCC T ss_conf 9999999988628---71785447896788----9999988877752366136887664026651167898888860983 Q ss_pred HHEECCCCHHHHHHHHC Q ss_conf 11126879899988512 Q gi|254780664|r 343 AIIAPTLSEEAADVLAK 359 (536) Q Consensus 343 vIiAP~f~~eAleiL~~ 359 (536) +|+...+..++..++++ T Consensus 78 vVi~~~~~~~a~~~ikq 94 (200) T 3i45_A 78 GLFNVLFGADLPKFVRE 94 (200) T ss_dssp EEEECCCTTHHHHHHHH T ss_pred EEEEEECCHHHHHHHHH T ss_conf 89999333789999999 No 106 >>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} (A:1-139,A:280-377) Probab=25.63 E-value=39 Score=13.78 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=5.8 Q ss_pred CCCCCCCCCCC Q ss_conf 34367881006 Q gi|254780664|r 225 EMRYGENPHQK 235 (536) Q Consensus 225 ~LRYGENPHQ~ 235 (536) .+++-+|-||- T Consensus 212 ~~~f~~~~~~~ 222 (237) T 3h5l_A 212 TMRFHADTQSA 222 (237) T ss_dssp EEEBCTTTCBB T ss_pred EEEECCCCCCC T ss_conf 79988999744 No 107 >>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:1-113,A:249-288) Probab=25.33 E-value=40 Score=13.74 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=3.4 Q ss_pred HHHHHHCCCEE Q ss_conf 99998759779 Q gi|254780664|r 516 ITVADQHGIAM 526 (536) Q Consensus 516 I~aan~~gi~m 526 (536) ++.+.+.||++ T Consensus 77 i~~l~~~gIPv 87 (153) T 1gud_A 77 VARAWKKGIYL 87 (153) T ss_dssp HHHHHHTTCEE T ss_pred HHHHHHCCCCE T ss_conf 99999719917 No 108 >>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} (A:133-207) Probab=25.32 E-value=33 Score=14.31 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=24.4 Q ss_pred HHHHHHCCC-----CCCEEEECHHHHHHHHHHHHCCCCCC Q ss_conf 999874015-----63135308999898898753023456 Q gi|254780664|r 143 MIRAAAKNH-----DYVTILTNPQDYPLFLAEMDVNNGKI 177 (536) Q Consensus 143 miRAAAKN~-----~~V~Vi~dp~dY~~~~~el~~~~g~~ 177 (536) .|-|.|-.. ....|+|+|.++..+.+.|+..+..+ T Consensus 25 aieaGaeDv~~~ed~~~~i~t~~~~~~~v~~~L~~~g~~~ 64 (75) T 1kon_A 25 ALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKA 64 (75) T ss_dssp HHHHTCSEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCCC T ss_pred HHHCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCE T ss_conf 9984954330236784399934224999999998668870 No 109 >>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protein structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} (A:107-199) Probab=25.31 E-value=25 Score=15.25 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=10.3 Q ss_pred HHEECCCCHHHHHHHHCC-CCCEEEEC Q ss_conf 111268798999885124-55315631 Q gi|254780664|r 343 AIIAPTLSEEAADVLAKK-PSMRFLKT 368 (536) Q Consensus 343 vIiAP~f~~eAleiL~~K-KnlRil~~ 368 (536) .-||-.|-.-+-+.|.++ .+.+++.+ T Consensus 24 ~rIATkyp~it~~yf~~~gi~~~ii~l 50 (93) T 1nh8_A 24 MRIATAYPNLVRKDLATKGIEATVIRL 50 (93) T ss_dssp CEEEESCHHHHHHHHHHHTCCCEEEEC T ss_pred CEEEECCCHHHHHHHHHCCCEEEEEEC T ss_conf 899981714777779876983899975 No 110 >>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} (A:) Probab=24.94 E-value=41 Score=13.69 Aligned_cols=123 Identities=10% Similarity=-0.034 Sum_probs=57.9 Q ss_pred CCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCC Q ss_conf 61369899875456869999999987999999427689999889951794653488165198553237155535533088 Q gi|254780664|r 14 IAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD 93 (536) Q Consensus 14 ~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~ 93 (536) ++=|.|||.=-..-==..+|+.|.+.|.+++-++-+.+.+.+. ..++.+.. +++-.+. ..+...+ T Consensus 27 l~gK~alVTGas~GIG~aiA~~la~~Ga~Vvl~~r~~~~l~~~------~~~~~~~~----~~~~~~~-----~d~~~~~ 91 (276) T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADT------ATRLSAYG----DCQAIPA-----DLSSEAG 91 (276) T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH------HHHHTTSS----CEEECCC-----CTTSHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHHHHHCC----CEEEEEC-----CCCCHHH T ss_conf 9999899928888899999999998699999997988999999------99976149----8699977-----7699999 Q ss_pred CHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC---CHHHHHHCCCCCCHHHHHHHHCCC Q ss_conf 9899999997799841499994888899731765---311232002334346999874015 Q gi|254780664|r 94 NPAHMKFMQDHELESIDLVVVNLYPFEESFCRED---DYYTMVENIDIGGPSMIRAAAKNH 151 (536) Q Consensus 94 ~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~---~~~~~IEnIDIGGpsmiRAAAKN~ 151 (536) .-....+........+|+||.|-.-+........ ...+...++-.+++-+.+.+++-+ T Consensus 92 ~~~~~~~~~~~~~g~id~lvnnag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (276) T 2b4q_A 92 ARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLR 152 (276) T ss_dssp HHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998767887567605764033344435435688788999999998889999999987642 No 111 >>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B* (A:159-249) Probab=24.80 E-value=41 Score=13.67 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=34.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH Q ss_conf 65654520168999999853321320045554275421457 Q gi|254780664|r 293 PCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVA 333 (536) Q Consensus 293 PCGvA~~~~~~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A 333 (536) .||+.....|.++...|+..-|-+.|.++-+=..+||.-.+ T Consensus 15 acg~~~~~eL~~~maa~lr~s~~~~~~~vsad~F~vdVV~r 55 (91) T 2gv9_A 15 HLQCRAPRDLCERMAAALRESPGASFRGISADHFEAEVVER 55 (91) T ss_dssp TTCCCSHHHHHHHHHHHHHHSSSCCTTCCCGGGCEEEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE T ss_conf 00121157799999999987542002455454379999998 No 112 >>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} (A:31-176) Probab=24.62 E-value=31 Score=14.52 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=5.2 Q ss_pred ECCCCCCCCCC Q ss_conf 61568656545 Q gi|254780664|r 288 VKHMNPCGVAT 298 (536) Q Consensus 288 vKH~NPCGvA~ 298 (536) +=|..|+|.+. T Consensus 123 ~l~~~~~~~~~ 133 (146) T 1pzm_A 123 VLLDKPSGRKV 133 (146) T ss_dssp EEEECGGGCSS T ss_pred EEEEECCCCCC T ss_conf 99980765648 No 113 >>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, calcium, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} (A:116-250) Probab=24.47 E-value=41 Score=13.63 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=16.0 Q ss_pred HHHHHHCCCCCCE-EEECHHHHHHHHHHHHC Q ss_conf 9998740156313-53089998988987530 Q gi|254780664|r 143 MIRAAAKNHDYVT-ILTNPQDYPLFLAEMDV 172 (536) Q Consensus 143 miRAAAKN~~~V~-Vi~dp~dY~~~~~el~~ 172 (536) .+|.+||.|+.+. +++|.++|..+++.+.. T Consensus 43 ~~~~~A~~fkk~~F~~vd~~~~~~~l~~~gl 73 (135) T 3ec3_A 43 KVLEVAKDFPEYTFAIADEEDYATEVKDLGL 73 (135) T ss_dssp HHHHHHTTCTTSEEEEEETTTTHHHHHHTTC T ss_pred HHHHHHHHCCCCEEEEECHHHHHHHHHHCCC T ss_conf 9999999718737999237883679997398 No 114 >>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} (A:198-356) Probab=24.13 E-value=39 Score=13.82 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=11.6 Q ss_pred HHHEECCCCHHHHHHHHC Q ss_conf 111126879899988512 Q gi|254780664|r 342 EAIIAPTLSEEAADVLAK 359 (536) Q Consensus 342 EvIiAP~f~~eAleiL~~ 359 (536) -|||-|.=+++++++-.+ T Consensus 98 kiIIQP~~~~~Si~LAAk 115 (159) T 1xsz_A 98 RVIIQPGQTKESIDLAAK 115 (159) T ss_dssp EEEEEECSSTTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999777787766665126 No 115 >>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} (A:1-129) Probab=23.73 E-value=41 Score=13.67 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=4.5 Q ss_pred EEEEECCCCC Q ss_conf 7999615686 Q gi|254780664|r 284 ACVIVKHMNP 293 (536) Q Consensus 284 a~vIvKH~NP 293 (536) ..+++=|.-+ T Consensus 65 ~~IiiTH~H~ 74 (129) T 1k07_A 65 KILLISHAHF 74 (129) T ss_dssp EEEECSSSSH T ss_pred EEEEECCCCC T ss_conf 6999689992 No 116 >>3i1m_I 30S ribosomal protein S9; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_I* 3e1a_W 3e1c_W 1vs5_I 3i1o_I 3i1q_I 3i1s_I 3i1z_I 3i21_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I ... (I:) Probab=23.66 E-value=29 Score=14.76 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.2 Q ss_pred EECCCCCCHHHHHHHHHHHHHHH Q ss_conf 97296888899999999998764 Q gi|254780664|r 443 GIGSGQTSRVDSTRFAAIKAHNI 465 (536) Q Consensus 443 GiGaGQ~sRVda~~iA~~KA~~~ 465 (536) --|.|+++..+|+++|+-||-.. T Consensus 67 v~GGG~~gQa~Air~aiaraL~~ 89 (130) T 3i1m_I 67 VKGGGISGQAGAIRHGITRALME 89 (130) T ss_dssp EESSCHHHHHHHHHHHHHHHTTS T ss_pred EECCCCCHHHHHHHHHHHHHHHH T ss_conf 84698214888999999999986 No 117 >>3lmz_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} (A:) Probab=23.53 E-value=43 Score=13.50 Aligned_cols=58 Identities=7% Similarity=-0.117 Sum_probs=37.5 Q ss_pred CCCCCEEEEEEEEECC-CCHHHHHHHHHHCCCEEEEEHH--------------HHHHHHHCCCCEEEHHHHCC Q ss_conf 6776136989987545-6869999999987999999427--------------68999988995179465348 Q gi|254780664|r 11 HGEIAVKTALISVHNK-TGVVEFASRLLSRGIKIISTGG--------------TCQLLEEEGIPVTSVFDITK 68 (536) Q Consensus 11 ~~~~~ikrALiSV~dK-tgl~~la~~L~~~g~~iisTgG--------------Ta~~l~~~gi~v~~Vs~~Tg 68 (536) .+.-+||-++-+.+-. ..+++..+.+.+.|++-+-=.+ ..+.+.+.|+++..++.... T Consensus 13 ~~~~~mkig~~~~~~~~~~l~~~l~~~~~~G~~~iel~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~ 85 (257) T 3lmz_A 13 KAVNPFHLGXAGYTFVNFDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYX 85 (257) T ss_dssp CCCCSSEEEECGGGGTTSCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf 7799867999712268999999999999869998996367778789999999999999861988998178745 No 118 >>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} (A:190-335) Probab=23.52 E-value=40 Score=13.70 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=27.8 Q ss_pred HHHEECCCCHHHHHHH---HCCCCCEEEEC--CCCCCCCCCCC-EECCCCHHHHHC Q ss_conf 1111268798999885---12455315631--67667776664-020321022310 Q gi|254780664|r 342 EAIIAPTLSEEAADVL---AKKPSMRFLKT--SSLLDFHGEEI-VLKTVSGGILVQ 391 (536) Q Consensus 342 EvIiAP~f~~eAleiL---~~KKnlRil~~--~~~~~~~~~~~-~~rsi~GG~LvQ 391 (536) =+|||.++++|||..| +.|..++++-+ +.+-+.....+ ++--+.||.++- T Consensus 56 LlIiAedv~~eaL~tLv~N~~~g~~~v~aVkaPgfG~~rk~~L~DiAi~tG~~vi~ 111 (146) T 1we3_A 56 LLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVIS 111 (146) T ss_dssp EEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBC T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHCCEEEC T ss_conf 89996676188999999987760423667856642278999999999982999833 No 119 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:357-459) Probab=23.41 E-value=25 Score=15.28 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=42.7 Q ss_pred CCHHHHHHHHHHCCCEEEEEHH---H----HHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 6869999999987999999427---6----89999889951794653488165198553237155535533 Q gi|254780664|r 27 TGVVEFASRLLSRGIKIISTGG---T----CQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 27 tgl~~la~~L~~~g~~iisTgG---T----a~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) .-+.++.+.+.+.||.++-.-+ . +..|++.||+...+++.. |+..|+|-.+.=.++.|... T Consensus 16 ~~l~~~~~~~~~~g~~V~i~a~s~~~~~rl~e~L~e~~i~~~~~~~~~---~~~~g~v~i~~g~l~~GF~~ 83 (103) T 2eyq_A 16 APLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD---EASDRGRYLMIGAAEHGFVD 83 (103) T ss_dssp STTHHHHHHHTTCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGG---GCCTTCCEEEECCCCSCEEE T ss_pred HHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHH---HCCCCCEEEEECCCCCCCEE T ss_conf 589999999996388413304888999999999986489820015554---50556504676245678421 No 120 >>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Nostoc SP} (A:215-293) Probab=23.41 E-value=43 Score=13.49 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=25.5 Q ss_pred CCCEEEEEEEEECCCCHHHHHHHHHHCCCE Q ss_conf 761369899875456869999999987999 Q gi|254780664|r 13 EIAVKTALISVHNKTGVVEFASRLLSRGIK 42 (536) Q Consensus 13 ~~~ikrALiSV~dKtgl~~la~~L~~~g~~ 42 (536) +...++.+|.||++.=...+|+.|..+|++ T Consensus 5 Pa~~~~qviGV~~~~~~~~~a~~l~~lg~~ 34 (79) T 1vqu_A 5 PLRPTGQVVGLFTPKLLTTVAQALDNLGKQ 34 (79) T ss_dssp TTCCSEEEEECSCGGGHHHHHHHHHHTTCS T ss_pred CCCCCHHCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 456401003767667651689999974974 No 121 >>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} (A:) Probab=23.32 E-value=43 Score=13.48 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=87.2 Q ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHH Q ss_conf 67761369899875456869999999987999999427689999889951794653488165198553237155535533 Q gi|254780664|r 11 HGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILS 90 (536) Q Consensus 11 ~~~~~ikrALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~ 90 (536) ..+++=|++||.=--.-==..+|+.|.+.|.+++-++-..+.+++. +++ -+-.+|++.+++.-+. T Consensus 23 ~~~l~gK~vlITGas~GIG~~iA~~la~~Ga~V~i~~r~~~~l~~~------~~~----~~~~~~~~~~~~~Dv~----- 87 (270) T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGI------GAA----FKQAGLEGRGAVLNVN----- 87 (270) T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH------HHH----HHHHTCCCEEEECCTT----- T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHH----HHHCCCCEEEEEEECC----- T ss_conf 9987999899928786899999999998699999997988999999------999----9965994689997469----- Q ss_pred CCCCHHHHHHH---HHCCCCCEEEEEEECC--CHHHHHCCCC-CHHHHHHCCCCCCH-HHHHHHHC-----CCCCCEEEE Q ss_conf 08898999999---9779984149999488--8899731765-31123200233434-69998740-----156313530 Q gi|254780664|r 91 IRDNPAHMKFM---QDHELESIDLVVVNLY--PFEESFCRED-DYYTMVENIDIGGP-SMIRAAAK-----NHDYVTILT 158 (536) Q Consensus 91 ~r~~~~~~~~l---~~~~i~~IDlVvvNLY--PF~~~v~~~~-~~~~~IEnIDIGGp-smiRAAAK-----N~~~V~Vi~ 158 (536) ++++.+.+ -......||+||.|=- ++.....-+. .++..++ |.+-|+ -|.|++.+ ...++.+++ T Consensus 88 ---~~~~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~-vN~~g~~~~~~~~lp~m~~~~~g~iI~~s 163 (270) T 3ftp_A 88 ---DATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVID-TNLKAVFRLSRAVLRPMMKARGGRIVNIT 163 (270) T ss_dssp ---CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHTCEEEEEEC T ss_pred ---CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHH-HHHCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf ---99999999999999829966864146346887445448999999998-87125266799999999985994899980 Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 899989889875302345666788999999999874228 Q gi|254780664|r 159 NPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYD 197 (536) Q Consensus 159 dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD 197 (536) +..-+...- ....=.--+.|..+|.++.+.+ T Consensus 164 S~~~~~~~~--------~~~~Y~~sK~al~~l~~~la~e 194 (270) T 3ftp_A 164 SVVGSAGNP--------GQVNYAAAKAGVAGMTRALARE 194 (270) T ss_dssp CHHHHHCCT--------TBHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHCCCCC--------CCHHHHHHHHHHHHHHHHHHHH T ss_conf 767647799--------9789999999999999999999 No 122 >>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} (A:) Probab=23.24 E-value=44 Score=13.47 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=11.7 Q ss_pred CHHHHHHHHHCCCCCEEEE Q ss_conf 9899999997799841499 Q gi|254780664|r 94 NPAHMKFMQDHELESIDLV 112 (536) Q Consensus 94 ~~~~~~~l~~~~i~~IDlV 112 (536) -++|++-|+++|+..+-+- T Consensus 60 y~eDi~l~~~~G~~~yRfs 78 (449) T 1qox_A 60 VEEDVQLLKDLGVKVYRFS 78 (449) T ss_dssp HHHHHHHHHHHTCSEEEEE T ss_pred HHHHHHHHHHCCCCEEECC T ss_conf 5999999998199989842 No 123 >>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} (A:) Probab=23.05 E-value=44 Score=13.44 Aligned_cols=151 Identities=16% Similarity=0.055 Sum_probs=73.2 Q ss_pred EEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHH-------CCCCE-EEHHHHCCCCHHCCCCCCCCCCHHHHHH Q ss_conf 698998754568699999999879999994276899998-------89951-7946534881651985532371555355 Q gi|254780664|r 17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEE-------EGIPV-TSVFDITKFPEIMGGRVKTLHPKIYGGI 88 (536) Q Consensus 17 krALiSV~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~-------~gi~v-~~Vs~~TgfpEil~GRVKTLHP~I~ggI 88 (536) |.+||+=..+-==..+|+.|.+.|+.++-++-+...|++ .|..+ .-+-|+|....+ T Consensus 3 K~vlITGas~GIG~aia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~v---------------- 66 (256) T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQV---------------- 66 (256) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHH---------------- T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH---------------- T ss_conf 8999947850999999999998799899998989999999999985289713785121000577---------------- Q ss_pred HHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCC---CCCCHHHHHHHHCCC-----CC-CEEEEC Q ss_conf 330889899999997799841499994888899731765311232002---334346999874015-----63-135308 Q gi|254780664|r 89 LSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENI---DIGGPSMIRAAAKNH-----DY-VTILTN 159 (536) Q Consensus 89 L~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnI---DIGGpsmiRAAAKN~-----~~-V~Vi~d 159 (536) +.-.+++.+ ...+||++|.|--.....--...+.++.-+.+ =.|..-+.|++.+-+ .. +..+++ T Consensus 67 ------~~~~~~~~~-~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~~~g~Iv~isS 139 (256) T 1geg_A 67 ------FAAVEQARK-TLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS 139 (256) T ss_dssp ------HHHHHHHHH-HTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC T ss_pred ------HHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf ------899999999-6399709998987666887677999999999999839999999999888886088751022520 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999898898753023456667889999999998742289 Q gi|254780664|r 160 PQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDT 198 (536) Q Consensus 160 p~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~YD~ 198 (536) ..- ... ....+.--=-|.|..+|..+..++- T Consensus 140 ~~~-------~~~-~~~~~~Y~asKaal~~l~~~la~E~ 170 (256) T 1geg_A 140 QAG-------HVG-NPELAVYSSSKFAVRGLTQTAARDL 170 (256) T ss_dssp GGG-------TSC-CTTBHHHHHHHHHHHHHHHHHHHHH T ss_pred HHH-------CCC-CCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 465-------368-8750889999999999999999985 No 124 >>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:1-61) Probab=23.05 E-value=35 Score=14.12 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=23.9 Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHH Q ss_conf 98753023456667889999999998---------7422899998 Q gi|254780664|r 167 LAEMDVNNGKIPYNFRKKMARQAFSR---------TASYDTAICR 202 (536) Q Consensus 167 ~~el~~~~g~~~~~~R~~lA~kAF~~---------ta~YD~~Ia~ 202 (536) +.-|..- .....++|++|+.+.|.. ...+|.+|+- T Consensus 12 mrlLs~R-DhSE~ELRrKL~a~~f~~~~~e~~~~~~eeIe~vIa~ 55 (61) T 3c1d_A 12 VRILAVR-DHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAW 55 (61) T ss_dssp HHHHTTS-CCCHHHHHHHHHCC-----------CCHHHHHHHHHH T ss_pred HHHHHCC-HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 9997543-4589999999998732113421224789999999999 No 125 >>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:250-297,A:383-459) Probab=22.93 E-value=44 Score=13.42 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=23.6 Q ss_pred EEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 35308999898898753023456667889999999998742 Q gi|254780664|r 155 TILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195 (536) Q Consensus 155 ~Vi~dp~dY~~~~~el~~~~g~~~~~~R~~lA~kAF~~ta~ 195 (536) .|+--|...+.+-+-++.---++++.+|+-+|--||+..|- T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (125) T 2v6e_A 2 VVIDYPRYMQAIYDIINKPIVSFDLTTRRGMAPLAFALAAL 42 (125) T ss_dssp EEEEHHHHHHHHHHHHHSCGGGSCCSSTGGGHHHHHHHHHH T ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 75170778999999996122232024558889999999998 No 126 >>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} (A:81-171) Probab=22.76 E-value=12 Score=17.41 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=52.9 Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCC-CCCCHHHHHHHHCCCC--CCEEEECHHHHHHHHH Q ss_conf 889899999997799841499994888899731765311232002-3343469998740156--3135308999898898 Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENI-DIGGPSMIRAAAKNHD--YVTILTNPQDYPLFLA 168 (536) Q Consensus 92 r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnI-DIGGpsmiRAAAKN~~--~V~Vi~dp~dY~~~~~ 168 (536) +|...-.+-++++||+...-.+++-- +.++.+ ++|+|-+|+.+.-++. -|.++-|.+++...++ T Consensus 11 ~dK~~~k~~l~~~gip~p~~~~~~~~-------------~~~~~~~~~g~P~vvKp~~~g~~g~gv~~~~~~~el~~~~~ 77 (91) T 2z04_A 11 KSRIREKLFLKKHGFPVPEFLVIKRD-------------EIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVK 77 (91) T ss_dssp TCHHHHHHHHHTTTCCCCCEEEC---------------------------CEEEECC----------------------- T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCH-------------HHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 57899998641147874221123205-------------44211110246630100002224574011110134667766 Q ss_pred HHHCC Q ss_conf 75302 Q gi|254780664|r 169 EMDVN 173 (536) Q Consensus 169 el~~~ 173 (536) ++..+ T Consensus 78 ~~~~~ 82 (91) T 2z04_A 78 NHDKE 82 (91) T ss_dssp ----- T ss_pred HHCCC T ss_conf 51367 No 127 >>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} (A:130-205) Probab=22.76 E-value=44 Score=13.40 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=20.7 Q ss_pred CCCEEEECHHHHHHHHHHHHCCCCCC Q ss_conf 63135308999898898753023456 Q gi|254780664|r 152 DYVTILTNPQDYPLFLAEMDVNNGKI 177 (536) Q Consensus 152 ~~V~Vi~dp~dY~~~~~el~~~~g~~ 177 (536) ....|+|+|.++..+.+.|+..+..+ T Consensus 40 ~~~~v~~~~~~~~~v~~aL~~~g~~~ 65 (76) T 1lfp_A 40 EVHIIYTVPEELYEVKENLEKLGVPI 65 (76) T ss_dssp SEEEEEECGGGHHHHHHHHHTTTCCC T ss_pred CEEEEEECHHHHHHHHHHHHHCCCCE T ss_conf 41899932888999999998658751 No 128 >>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} (A:10-247) Probab=22.75 E-value=40 Score=13.76 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=10.5 Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHH Q ss_conf 2799961568656545201689999 Q gi|254780664|r 283 AACVIVKHMNPCGVATADTLVEAYR 307 (536) Q Consensus 283 Pa~vIvKH~NPCGvA~~~~~~~Ay~ 307 (536) +.++++ +||.|.-....-...+. T Consensus 113 ~~~~~~--~~~~g~~~~~~~i~~la 135 (238) T 2fnu_A 113 TKAIVS--VDYAGKSVEVESVQKLC 135 (238) T ss_dssp EEEEEE--ECGGGCCCCHHHHHHHH T ss_pred CCCCEE--ECCCCCCCCCCCCCCCC T ss_conf 201100--01356432345321211 No 129 >>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} (A:169-391) Probab=22.74 E-value=41 Score=13.65 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=46.0 Q ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHH-CCCCCCEEEECHHHHHHHHHHHHCCC Q ss_conf 99999997799841499994888899731765311232002334346999874-01563135308999898898753023 Q gi|254780664|r 96 AHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAA-KNHDYVTILTNPQDYPLFLAEMDVNN 174 (536) Q Consensus 96 ~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAA-KN~~~V~Vi~dp~dY~~~~~el~~~~ 174 (536) +-.+.+++.|...+- -++++=||. -|=--||+.|| +++..|.|.. ++.. ... T Consensus 10 e~r~~~~~~g~~~vv-a~~tfdP~t-----------------~GH~~ii~raa~~~~d~l~V~v-------~~~~--~k~ 62 (223) T 1g8f_A 10 QLRLEFQSRQWDRVV-AFQTRNPMH-----------------RAHRELTVRAAREANAKVLIHP-------VVGL--TKP 62 (223) T ss_dssp HHHHHHHHTTCCCEE-EEEESSCCC-----------------HHHHHHHHHHHHHHTCEEEEEE-------BCSB--CST T ss_pred HHHHHHHHCCCCEEE-EEECCCCCC-----------------HHHHHHHHHHHHHCCCCEEEEE-------EECC--CCC T ss_conf 999986423611578-874388998-----------------7999999999974378669833-------1136--887 Q ss_pred CCCCHHHHHHHHHHHHHH Q ss_conf 456667889999999998 Q gi|254780664|r 175 GKIPYNFRKKMARQAFSR 192 (536) Q Consensus 175 g~~~~~~R~~lA~kAF~~ 192 (536) +.++.+.|.++..++..+ T Consensus 63 ~~f~~~~Rv~~~~~~~~~ 80 (223) T 1g8f_A 63 GDIDHHTRVRVYQEIIKR 80 (223) T ss_dssp TCCCHHHHHHHHHHHGGG T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 776879999999999974 No 130 >>1pbj_A Hypothetical protein; structural genomics, CBS domain, PSI, protein structure initiative; 1.40A {Methanothermobacterthermautotrophicus str} (A:68-125) Probab=22.68 E-value=45 Score=13.39 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=18.1 Q ss_pred HHHHHHHHHCCCCCEEEEEECCEEEEE Q ss_conf 999999860056677999968938997 Q gi|254780664|r 418 MKFAFKVVKHVKSNAVVYAKDGRTVGI 444 (536) Q Consensus 418 L~FA~kv~K~vkSNAIv~ak~~~tiGi 444 (536) +.-|++...--+-.++.++.+++++|| T Consensus 17 i~ea~~lm~~~~i~~lpVvd~~~lvGi 43 (58) T 1pbj_A 17 IKEAAEKXVKNVVWRLLVEEDDEIIGV 43 (58) T ss_dssp HHHHHHHHHHHTCSEEEEEETTEEEEE T ss_pred HHHHHHHHHHCCCCEEEEEECCEEEEE T ss_conf 999999999869929999989999999 No 131 >>2qw5_A Xylose isomerase-like TIM barrel; YP_324688.1, putative sugar phosphate isomerase/epimerase, structural genomics; 1.78A {Anabaena variabilis atcc 29413} (A:) Probab=22.50 E-value=45 Score=13.36 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=9.6 Q ss_pred CHHHHHHHHHHCCCEEE Q ss_conf 86999999998799999 Q gi|254780664|r 28 GVVEFASRLLSRGIKII 44 (536) Q Consensus 28 gl~~la~~L~~~g~~ii 44 (536) .+++..+.+.+.|+.=| T Consensus 32 ~~~~~~~~~~~~G~~~i 48 (335) T 2qw5_A 32 IVVAHIKKLQRFGYSGF 48 (335) T ss_dssp HHHHHHHHHHHTTCCEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 49999999996296989 No 132 >>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:1-104,A:238-283) Probab=22.48 E-value=45 Score=13.36 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=13.3 Q ss_pred HHHHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEEEC Q ss_conf 89999719959-993898779889999998759779974 Q gi|254780664|r 492 IVEAIKAGVTA-VIQPGGSVRDSEAITVADQHGIAMVFT 529 (536) Q Consensus 492 ie~aa~~Gi~a-IiqPGGSirD~evI~aan~~gi~m~fT 529 (536) ++.+.+.|+.+ |+-|..+-...+.++.+.+.||++++- T Consensus 50 i~~ll~~~vdgIIi~~~~~~~~~~~~~~l~~~gIPvV~i 88 (150) T 2ioy_A 50 VEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITI 88 (150) T ss_dssp HHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEE T ss_conf 999986232334456632222210000233157528998 No 133 >>1u0q_A Immunoglobulin heavy chain variable domain; immunoglobulin domain, immune system; 1.60A {Lama glama} PDB: 1qd0_A* 1g9e_A 1hcv_A (A:) Probab=22.47 E-value=28 Score=14.91 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=4.7 Q ss_pred CCCCCCCHHHH Q ss_conf 12221200116 Q gi|254780664|r 262 NNINDLDAAFE 272 (536) Q Consensus 262 NNllD~daA~~ 272 (536) ||+---|.|.. T Consensus 84 ~sL~~eDTAvY 94 (125) T 1u0q_A 84 NSLKLDDTAVY 94 (125) T ss_dssp CSCCGGGCEEE T ss_pred EEECCCCEEEE T ss_conf 20013631688 No 134 >>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} (A:121-214) Probab=22.43 E-value=30 Score=14.69 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=44.8 Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCC-CCCCHHHH-HHHHCC-CCCCEEEECHHHHHHHHH Q ss_conf 889899999997799841499994888899731765311232002-33434699-987401-563135308999898898 Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENI-DIGGPSMI-RAAAKN-HDYVTILTNPQDYPLFLA 168 (536) Q Consensus 92 r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnI-DIGGpsmi-RAAAKN-~~~V~Vi~dp~dY~~~~~ 168 (536) +|...-.+-|+++||+...-.+++= .+++.+-+ .||+|.++ ....-- -..|.++.|+++....++ T Consensus 7 ~dK~~~k~~l~~~gip~p~~~~~~~------------~e~~~~~~~~~g~p~vi~kp~~~~~~~Gv~~~~~~~el~~~~~ 74 (94) T 2qk4_A 7 SSKRFAKEFMDRHGIPTAQWKAFTK------------PEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQ 74 (94) T ss_dssp HBHHHHHHHHHHTTCCBCCEEEESS------------HHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEC------------HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH T ss_conf 5689999998633656541057612------------7889988876289957999456577655320156999999999 Q ss_pred HHHC Q ss_conf 7530 Q gi|254780664|r 169 EMDV 172 (536) Q Consensus 169 el~~ 172 (536) .+.. T Consensus 75 ~~~~ 78 (94) T 2qk4_A 75 EIMQ 78 (94) T ss_dssp HHTT T ss_pred HHHC T ss_conf 9750 No 135 >>3cny_A Inositol catabolism protein IOLE; NP_786806.1, xylose isomerase-like TIM barrel, structural genomics; 1.85A {Lactobacillus plantarum WCFS1} (A:) Probab=22.13 E-value=46 Score=13.31 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=41.5 Q ss_pred CCCHHHHHHHHHHCCCEEEEEHH-------HHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCCHHHH Q ss_conf 56869999999987999999427-------68999988995179465348816519855323715553553308898999 Q gi|254780664|r 26 KTGVVEFASRLLSRGIKIISTGG-------TCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHM 98 (536) Q Consensus 26 Ktgl~~la~~L~~~g~~iisTgG-------Ta~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~~~~~ 98 (536) +..++++.+.+.+.|++-+--.. ..+.+++.|+++..+.-..... |....--+.. ....+ T Consensus 30 ~~~l~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~-----------~~~~~~~~~~--~~~~i 96 (301) T 3cny_A 30 DNNLQQLLSDIVVAGFQGTEVGGFFPGPEKLNYELKLRNLEIAGQWFSSYII-----------RDGIEKASEA--FEKHC 96 (301) T ss_dssp TCCHHHHHHHHHHHTCCEECCCTTCCCHHHHHHHHHHTTCEECEEEEEECHH-----------HHHHHHHHHH--HHHHH T ss_pred CCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCCC-----------CCHHHHHHHH--HHHHH T ss_conf 9999999999998598999989978998999999998099001402466543-----------2002457788--88899 Q ss_pred HHHHHCCCCCE Q ss_conf 99997799841 Q gi|254780664|r 99 KFMQDHELESI 109 (536) Q Consensus 99 ~~l~~~~i~~I 109 (536) +.++.+|...+ T Consensus 97 ~~a~~lg~~~v 107 (301) T 3cny_A 97 QYLKAINAPVA 107 (301) T ss_dssp HHHHHTTCCEE T ss_pred HHHHHHHCCEE T ss_conf 99998403635 No 136 >>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} (A:152-269) Probab=22.10 E-value=46 Score=13.31 Aligned_cols=40 Identities=35% Similarity=0.475 Sum_probs=32.6 Q ss_pred CCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEC Q ss_conf 855589999719959993898779889999998759779974 Q gi|254780664|r 488 FPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFT 529 (536) Q Consensus 488 F~D~ie~aa~~Gi~aIiqPGGSirD~evI~aan~~gi~m~fT 529 (536) =.++++.+.++|+..|.. |..-|+|-|+...++|+.++.| T Consensus 78 g~~~~~~ai~ag~~~ieH--~~~~~~e~i~~~~~~~v~~~pt 117 (118) T 3gnh_A 78 GASGIREAVRAGVDTIEH--ASLVDDEGIKLAVQKGAYFSMD 117 (118) T ss_dssp SHHHHHHHHHTTCSEEEE--CTTCCHHHHHHHHHHTCEEECC T ss_pred CHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCEEEEE T ss_conf 505689999845430000--1222232222222454202101 No 137 >>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} (A:) Probab=21.13 E-value=48 Score=13.17 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=46.4 Q ss_pred HHHHHHHH-CCCCCEEEEEECCEEEEECCCCCCH-----HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHH Q ss_conf 99999860-0566779999689389972968888-----99999999998764200122223487099973668685558 Q gi|254780664|r 419 KFAFKVVK-HVKSNAVVYAKDGRTVGIGSGQTSR-----VDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGI 492 (536) Q Consensus 419 ~FA~kv~K-~vkSNAIv~ak~~~tiGiGaGQ~sR-----Vda~~iA~~KA~~~~~~~~~~~~~~g~vlaSDAFFPF~D~i 492 (536) ..|.+..+ .-..=+=|+++++.+|+.|--++.. ..+-..|+.++..... ...++|+.+-+- .+|=+-+. T Consensus 13 ~~a~~~~~~~~~~vGaViv~~~~ii~~g~n~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~tlY~T-~ePC~mC~ 87 (144) T 2a8n_A 13 VEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALG----QERLPGADLYVT-LEPCTMCA 87 (144) T ss_dssp HHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT----CSCCTTCEEEEE-ECCBHHHH T ss_pred HHHHHHHHCCCCCEEEEEEECCEEEEEEEEEEECCCCCEECCHHHHHHHHHHHHC----CCCCCCCEEECC-CCCCHHHH T ss_conf 9999862059998999999899899976544420355221122779999999727----666777454125-45415799 Q ss_pred HHHHHCCCCEEEE Q ss_conf 9999719959993 Q gi|254780664|r 493 VEAIKAGVTAVIQ 505 (536) Q Consensus 493 e~aa~~Gi~aIiq 505 (536) ..+..+||+-|+- T Consensus 88 ~ai~~agI~rVvy 100 (144) T 2a8n_A 88 AAISFARIRRLYY 100 (144) T ss_dssp HHHHHTTCSEEEE T ss_pred HHHHHHHCCEEEE T ss_conf 9999961786999 No 138 >>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} (A:1-14,A:244-382) Probab=21.12 E-value=40 Score=13.71 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=15.6 Q ss_pred HHHHCCCCCCCEEEEECCC Q ss_conf 9853321320045554275 Q gi|254780664|r 309 ALSCDPISAFGGIIAFNRE 327 (536) Q Consensus 309 A~~~DP~SAFGGIIa~N~~ 327 (536) .+..||-|.|||.+-|-.+ T Consensus 117 ~L~~DpdSrfgGLLfF~d~ 135 (153) T 1yew_A 117 DIIYDPDSRFAGLLFFFDA 135 (153) T ss_dssp GGGGSSCCEEEEEEEEEET T ss_pred HHHCCCCCCEEEEEEEECC T ss_conf 8756961200069999848 No 139 >>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} (A:127-209) Probab=21.12 E-value=45 Score=13.35 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.6 Q ss_pred CCCEEEECHHHHHHHHHHHHCCC Q ss_conf 63135308999898898753023 Q gi|254780664|r 152 DYVTILTNPQDYPLFLAEMDVNN 174 (536) Q Consensus 152 ~~V~Vi~dp~dY~~~~~el~~~~ 174 (536) ....|.|+|.+|..+.+.|+.++ T Consensus 45 ~~~~i~t~~~~~~~v~~~L~~~g 67 (83) T 1mw7_A 45 DKIIIRGDYNSFKLLNEGFESLK 67 (83) T ss_dssp TEEEEEEEGGGHHHHHHHHHHTT T ss_pred CCEEEECCHHHHHHHHHHHHHCC T ss_conf 84189624366899999998647 No 140 >>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:1-108,A:245-290) Probab=20.64 E-value=49 Score=13.10 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=5.3 Q ss_pred HHHHHHHHHCCCEEE Q ss_conf 899999987597799 Q gi|254780664|r 513 SEAITVADQHGIAMV 527 (536) Q Consensus 513 ~evI~aan~~gi~m~ 527 (536) .+.++.+.+.|+.++ T Consensus 76 ~~~i~~l~~~gIpvV 90 (154) T 3d02_A 76 EPVFKKARDAGIVVL 90 (154) T ss_dssp HHHHHHHHHTTCEEE T ss_pred HHHHHHHHHCCCCEE T ss_conf 489999997699588 No 141 >>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} (A:122-186) Probab=20.62 E-value=44 Score=13.41 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=24.2 Q ss_pred HHHHHHHHHCCCEEEEEHHHHHHHHHCCCC Q ss_conf 999999998799999942768999988995 Q gi|254780664|r 30 VEFASRLLSRGIKIISTGGTCQLLEEEGIP 59 (536) Q Consensus 30 ~~la~~L~~~g~~iisTgGTa~~l~~~gi~ 59 (536) +.++|.|.+.|+..+..--.+.||+..|+= T Consensus 22 ~~iskdLKkrGFkFVGPt~~yafmQA~G~v 51 (65) T 2jg6_A 22 TQLSKDLKQYGFKFLGPVTVFSFLEAAGLY 51 (65) T ss_dssp HHHHHHHHTTTCCSCCHHHHHHHHHHTTSE T ss_pred HHHHHHHHHCCCEECCCHHHHHHHHHCCCC T ss_conf 999999985778545836999999984997 Done!