HHsearch results for GI: 254780664 and protein with PDBid: 1vmd_A
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=98.06 E-value=5.6e-05 Score=55.16 Aligned_cols=119 Identities=23% Similarity=0.320 Sum_probs=81.7
Q ss_pred EEEEEEE-EECCCCHHHHHHHHHHC--CCEEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHC
Q ss_conf 3698998-75456869999999987--99999942768999988-99517946534881651985532371555355330
Q gi|254780664|r 16 VKTALIS-VHNKTGVVEFASRLLSR--GIKIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91 (536)
Q Consensus 16 ikrALiS-V~dKtgl~~la~~L~~~--g~~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~ 91 (536)
.+-|||. =.||..+++||+.+.++ ||+|++|+||+++|+++ |++|+.+-. ...||
T Consensus 28 ~~iAlIAhD~dK~~lv~~ak~~~~lL~Gf~LvAT~GTa~~L~e~ggl~v~~v~~-----------------~~~gg---- 86 (178)
T 1vmd_A 28 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKS-----------------GPLGG---- 86 (178)
T ss_dssp CEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSC-----------------GGGTH----
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCEEEEEEE-----------------CCCCC----
T ss_conf 337898532774999999999999964974997053899998735974898640-----------------37888----
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 88989999999779984149999488889973176531123200233434699987401563135308999898898753
Q gi|254780664|r 92 RDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMD 171 (536)
Q Consensus 92 r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~ 171 (536)
..++.++-.. ..||+||.=.-|... +. .. -| |-.|.|+|-. .+|.++|+.+-=..++..+.
T Consensus 87 ---~p~I~d~I~~--geI~lVINt~d~~~~---~~-~~------~D--~~~IRR~av~--~~IP~~Ttl~tA~a~i~ai~ 147 (178)
T 1vmd_A 87 ---DQQIGAMIAE--GKIDVLIFFWDPLEP---QA-HD------VD--VKALIRIATV--YNIPVAITRSTADFLISSPL 147 (178)
T ss_dssp ---HHHHHHHHHT--TSCCEEEEECCSSSC---CT-TS------CC--HHHHHHHHHH--TTCCEESSHHHHHHHHHSGG
T ss_pred ---CCCHHHHHHC--CCCCEEEECCCCCCC---CC-CH------HH--HHHHHHHHHH--HCCCEEECHHHHHHHHHHHH
T ss_conf ---8529999986--982189981699777---76-60------26--9999999998--49723546999999999897
Q ss_pred CCC
Q ss_conf 023
Q gi|254780664|r 172 VNN 174 (536)
Q Consensus 172 ~~~ 174 (536)
.+.
T Consensus 148 ~~~ 150 (178)
T 1vmd_A 148 MND 150 (178)
T ss_dssp GGS
T ss_pred HCC
T ss_conf 467