HHsearch results for GI: 254780664 and protein with PDBid: 2yvq_A
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=99.07 E-value=7.5e-10 Score=90.58 Aligned_cols=123 Identities=27% Similarity=0.336 Sum_probs=84.2
Q ss_pred CCCCCEEEEEEEE--ECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHH
Q ss_conf 6776136989987--54568699999999879999994276899998899517946534881651985532371555355
Q gi|254780664|r 11 HGEIAVKTALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGI 88 (536)
Q Consensus 11 ~~~~~ikrALiSV--~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggI 88 (536)
.-++|-|..|||| +||..+.++|+.|.++||+|++|+||+++|+++||+|+.|..... +|| ++-.|
T Consensus 19 g~~lP~kgvliSv~d~dK~~~~~~a~~L~~lGf~i~AT~GTa~~L~~~gi~~~~V~~~~~-----~~~-~~~~~------ 86 (143)
T 2yvq_A 19 GFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQ-----EGQ-NPSLS------ 86 (143)
T ss_dssp SCCCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGG-----C------CB------
T ss_pred CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEEEEECC-----CCC-CCCCC------
T ss_conf 998899888999867637789999999997496789735899999975985189985213-----676-66743------
Q ss_pred HHCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHH
Q ss_conf 33088989999999779984149999488889973176531123200233434699987401563135308999898898
Q gi|254780664|r 89 LSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLA 168 (536)
Q Consensus 89 L~~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~ 168 (536)
|..++-+. ..|||| +|...- +. ..+. | | -+||-+|-.| +|.++|+++--..+++
T Consensus 87 --------~i~~~i~~--g~i~lV-INtp~~------~~---~~~~--d--g-~~IRR~Av~~-~Ip~~T~i~~A~~~v~ 140 (143)
T 2yvq_A 87 --------SIRKLIRD--GSIDLV-INLPNN------NT---KFVH--D--N-YVIRRTAVDS-GIPLLTNFQVTKLFAE 140 (143)
T ss_dssp --------CHHHHHHT--TSCCEE-EECCCC------CG---GGHH--H--H-HHHHHHHHHT-TCCEECSHHHHHHHHH
T ss_pred --------CHHHHHHC--CCEEEE-EECCCC------CC---CCCC--C--H-HHHHHHHHHC-CCCEEECHHHHHHHHH
T ss_conf --------39999875--975999-986789------97---6566--5--7-9999999975-9998868999999999
Q ss_pred HHH
Q ss_conf 753
Q gi|254780664|r 169 EMD 171 (536)
Q Consensus 169 el~ 171 (536)
.|+
T Consensus 141 ale 143 (143)
T 2yvq_A 141 AVQ 143 (143)
T ss_dssp TCC
T ss_pred HHC
T ss_conf 859