HHSEARCH alignment of GI: 254780664 and SCOP domain: d1a9xa2

Alignment
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=98.83  E-value=3.5e-08  Score=76.75  Aligned_cols=113  Identities=27%  Similarity=0.340  Sum_probs=81.8

Q ss_pred             EEEEEEE--ECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCEEEHHHHCCCCHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             6989987--54568699999999879999994276899998899517946534881651985532371555355330889
Q gi|254780664|r   17 KTALISV--HNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDN   94 (536)
Q Consensus        17 krALiSV--~dKtgl~~la~~L~~~g~~iisTgGTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~I~ggIL~~r~~   94 (536)
                      -.+||||  .||..+.++|+.|.++||+|++|+|||++|+++||+|+.|..+.      +|+     |.+-         
T Consensus         8 G~v~iSv~d~dK~~~~~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~ki~------~~~-----p~i~---------   67 (138)
T d1a9xa2           8 GRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVH------EGR-----PHIQ---------   67 (138)
T ss_dssp             SEEEEECCGGGGTTHHHHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTT------TCS-----SBHH---------
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCC------CCC-----CCHH---------
T ss_conf             87999976553668999999999879878866864899987224531101346------665-----2076---------


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCC
Q ss_conf             8999999977998414999948888997317653112320023343469998740156313530899989889875302
Q gi|254780664|r   95 PAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVN  173 (536)
Q Consensus        95 ~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~dp~dY~~~~~el~~~  173 (536)
                          .-+++   ..||||| |. |-..         +.++  |  |-.|=|+|..  ..|.++|+.+--..+++.|+..
T Consensus        68 ----d~i~~---gkidlVI-Nt-~~~~---------~~~~--d--g~~IRR~Av~--~~IP~~T~l~~A~a~i~al~~~  122 (138)
T d1a9xa2          68 ----DRIKN---GEYTYII-NT-TSGR---------RAIE--D--SRVIRRSALQ--YKVHYDTTLNGGFATAMALNAD  122 (138)
T ss_dssp             ----HHHHH---TCCSEEE-EC-CCSH---------HHHH--H--THHHHHHHHH--TTCEEESSHHHHHHHHHHHTCC
T ss_pred             ----HHHHC---CCEEEEE-EC-CCCC---------CCCC--C--HHHHHHHHHH--CCCCEEECHHHHHHHHHHHHHC
T ss_conf             ----78744---9767999-88-9997---------5452--4--8999999997--4999996599999999999847


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Methylglyoxal synthase-like
superfamily: Methylglyoxal synthase-like
family: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
domain: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
species: Escherichia coli [TaxId: 562]