HHSEARCH alignment of GI: 254780664 and SCOP domain: d2pjua1

Alignment
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=93.09  E-value=0.085  Score=30.33  Aligned_cols=135  Identities=14%  Similarity=0.165  Sum_probs=75.6

Q ss_pred             EEEEEEECC---CCHHHHHHHHHHCCC-EEEEEHHHHHHHHHC-CCCEEEHHHHCCCCHHCC--CCCCCCCCHHHHHHHH
Q ss_conf             989987545---686999999998799-999942768999988-995179465348816519--8553237155535533
Q gi|254780664|r   18 TALISVHNK---TGVVEFASRLLSRGI-KIISTGGTCQLLEEE-GIPVTSVFDITKFPEIMG--GRVKTLHPKIYGGILS   90 (536)
Q Consensus        18 rALiSV~dK---tgl~~la~~L~~~g~-~iisTgGTa~~l~~~-gi~v~~Vs~~TgfpEil~--GRVKTLHP~I~ggIL~   90 (536)
                      +|=|.|++.   .++.+..+.+...|+ =|||.|||+.+|+++ .+||.+|. +|+|. +|.  -+.|..+++|  |+..
T Consensus        26 ~~~i~v~~~~~e~av~~~~~~~~~~~~DviISRG~ta~~ir~~~~iPVV~I~-vs~~D-il~al~~a~~~~~ki--avV~  101 (186)
T d2pjua1          26 LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIK-PSGYD-VLQFLAKAGKLTSSI--GVVT  101 (186)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEEC-CCHHH-HHHHHHHTTCTTSCE--EEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCEEEEC-CCHHH-HHHHHHHHHHHCCCE--EEEE
T ss_conf             8629965074788999999998708998999796389999986899879970-88768-999999999758978--9991


Q ss_pred             CCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCC-CHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             0889899999997799841499994888899731765-31123200233434699987401563135308
Q gi|254780664|r   91 IRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVENIDIGGPSMIRAAAKNHDYVTILTN  159 (536)
Q Consensus        91 ~r~~~~~~~~l~~~~i~~IDlVvvNLYPF~~~v~~~~-~~~~~IEnIDIGGpsmiRAAAKN~~~V~Vi~d  159 (536)
                      -++.....+.+.++  -.+|+...-...=++.-..=. -.++-++-| |||....+.|.+.--.-..+++
T Consensus       102 ~~~~~~~~~~~~~l--l~~~i~~~~~~~~~e~~~~v~~l~~~G~~vV-VG~~~~~~~A~~~Gl~~vli~S  168 (186)
T d2pjua1         102 YQETIPALVAFQKT--FNLRLDQRSYITEEDARGQINELKANGTEAV-VGAGLITDLAEEAGMTGIFIYS  168 (186)
T ss_dssp             ESSCCHHHHHHHHH--HTCCEEEEEESSHHHHHHHHHHHHHTTCCEE-EESHHHHHHHHHTTSEEEESSC
T ss_pred             CCCCCHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHHCCCCEEEEEC
T ss_conf             77625699999999--5996489996388999999999998799899-9985999999984997899847


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: PrpR receptor domain-like
family: PrpR receptor domain-like
domain: Propionate catabolism operon regulatory protein PrpR
species: Escherichia coli [TaxId: 562]