RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] (536 letters) >gnl|CDD|30487 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]. Length = 515 Score = 714 bits (1845), Expect = 0.0 Identities = 301/523 (57%), Positives = 377/523 (72%), Gaps = 11/523 (2%) Query: 16 VKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75 +K AL+SV +KTG+VEFA L+ G++I+STGGT +LL E GIPVT V DIT FPE++ G Sbjct: 2 IKRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDG 61 Query: 76 RVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVE 134 RVKTLHPKI+GGIL+ RD HM +++H +E IDLVVVNLYPFEE+ + VE Sbjct: 62 RVKTLHPKIHGGILARRDKDEHMAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAVE 121 Query: 135 NIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTA 194 NIDIGGP+M+RAAAKNH VT++ +P DY L E+ NG++ RK++A +AF TA Sbjct: 122 NIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELK-ANGELSLATRKRLAAKAFEHTA 180 Query: 195 SYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLV 254 +YD AI + + FP+ LN++ KKQ++RYGENPHQ AA Y K G+A A + Sbjct: 181 AYDAAIANYFSELLGGEFPEQLNLSFTKKQDLRYGENPHQSAAFYRDGNAKGGVATAKQL 240 Query: 255 QGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDP 314 QGK LSYNNI D DAA+ELV EF + AC IVKH NPCGVA DT+ EAY+RA DP Sbjct: 241 QGKELSYNNIADADAAWELVKEF-DEPGPACAIVKHANPCGVAVGDTIAEAYKRAYEADP 299 Query: 315 ISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDF 374 SAFGGIIA NREVD E A+ + K+F E IIAP+ +EEA ++LAKK ++R L L Sbjct: 300 TSAFGGIIALNREVDVETAEAISKIFLEVIIAPSYTEEALEILAKKKNLRVLTIGP-LGP 358 Query: 375 HGEEIVLKTVSGGILVQTRDN-VVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAV 433 + K VSGG+LVQ RD+ ++D EL VVTKR PT+QEL D+ FA+KVVKHVKSNA+ Sbjct: 359 RAAGLEFKRVSGGLLVQERDDGMIDEAELKVVTKRQPTEQELEDLLFAWKVVKHVKSNAI 418 Query: 434 VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIV 493 VYAKDG+TVGIG+GQ SRVDS R AA KA + +A +G+V+AS+AF+PFPDGI Sbjct: 419 VYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGLRA------HGAVLASDAFFPFPDGID 472 Query: 494 EAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536 A KAG+ A+IQPGGS+RD E I AD+HGIAMVFTG+RHFRH Sbjct: 473 AAAKAGIKAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRHFRH 515 >gnl|CDD|145132 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase EC:2.1.2.3 (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP. Length = 315 Score = 368 bits (946), Expect = e-102 Identities = 162/319 (50%), Positives = 207/319 (64%), Gaps = 7/319 (2%) Query: 147 AAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTASYDTAICRWLAN 206 AAKNH VTI+ +P DY LAE+ G + R+++A +AF TA+YD AI + Sbjct: 1 AAKNHKRVTIVVDPADYSAVLAELK-KEGSLTLQTRRRLALKAFEHTAAYDAAIADYFRK 59 Query: 207 AESENFP-DYLNITAVKKQEMRYGENPHQKAALYSTPE-KKSGIAHAVLVQGKPLSYNNI 264 S P + V+KQ +RYGENPHQ+AA Y P K+ IA A + GK +SYNN+ Sbjct: 60 QYSPKHPERTFTLPGVRKQSLRYGENPHQQAAFYVDPTQKEGSIAPAEQLHGKEMSYNNL 119 Query: 265 NDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAF 324 D DAA+ LV EF +Q A IVKH NPCGVA ++ EAY RA DP+SAFGGIIA Sbjct: 120 LDADAAWRLVKEFENQ--PAAAIVKHANPCGVAVGPSIAEAYARAREADPMSAFGGIIAL 177 Query: 325 NREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFHGEEIVLKTV 384 N EVD E AKE+ + F+E IIAP EA +VL++K ++R L + E+ L+ V Sbjct: 178 NDEVDVETAKEISEEFSEVIIAPGYEPEALEVLSRKKNLRVL-VLQEDPAYVPELELRQV 236 Query: 385 SGGILVQTRDNVVDNK-ELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVG 443 SGG+L+Q RD+ + E +VVTKR PT+QEL D+ FA+KVVKHVKSNA+VYAK+G TVG Sbjct: 237 SGGLLIQDRDDGGVDDSEFSVVTKRKPTEQELEDLLFAWKVVKHVKSNAIVYAKNGMTVG 296 Query: 444 IGSGQTSRVDSTRFAAIKA 462 IG+GQ SRV S R A KA Sbjct: 297 IGAGQQSRVHSARLAGDKA 315 >gnl|CDD|37766 KOG2555, KOG2555, KOG2555, AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]. Length = 588 Score = 361 bits (928), Expect = e-100 Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 40/472 (8%) Query: 17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76 K AL+SV +KTG+++ A L+ G+ ++++GGT ++L + G+PV V +IT FPE++GGR Sbjct: 5 KLALLSVSDKTGLLDLAKGLVELGVTLVASGGTAKMLRDAGLPVRDVSEITHFPEMLGGR 64 Query: 77 VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135 VKTLHP ++GGIL+ RD + K +++ ++ +D+VV NLYPF+E+ + VEN Sbjct: 65 VKTLHPAVHGGILA-RDIESDEKDLKEQGIDKVDVVVCNLYPFKETVAKPGVTVEEAVEN 123 Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195 IDIGG +++RAAAKNH VTI+ +P DY L+E+ + +I + R + A +AF TAS Sbjct: 124 IDIGGVTLLRAAAKNHARVTIVCDPADYDAVLSEL--KSSEISQDLRNRRALKAFEHTAS 181 Query: 196 YDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQ 255 YD AI + SE V + +RYG NPHQK A + + VL Sbjct: 182 YDAAISDYFRKQYSE---------GVSQLSLRYGMNPHQKPA--QLYVVQGKLPFKVL-C 229 Query: 256 GKPLSYNNINDLDAAFELVSEFR-SQDCAACVIVKHMNPCGVATADTLVE---------- 304 G P Y N+ D ++ LV E + A KH++P G A L + Sbjct: 230 GSP-GYINLLDALNSWPLVKELSENLGLPAAASFKHVSPAGAAVGLPLSDVEAKVYFVDD 288 Query: 305 ---------AYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAAD 355 AY RA D +S+FG +A + VD A+ + + ++ +IAP EA + Sbjct: 289 IYELTPLACAYARARGADRMSSFGDFVALSDVVDVVTARIISREVSDGVIAPGYEPEALE 348 Query: 356 VLAKKPSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKEL--TVVTKRSP-TD 412 +L+KK + ++ ++ E+ + V G L Q R++ V ++ L VV+K + Sbjct: 349 ILSKKKNGKYCILQMDPNYVPGEVERRQVFGLTLQQKRNDAVIDQSLFSNVVSKNKDLPE 408 Query: 413 QELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHN 464 L D+ A +K+ +SN+V YAK+G VG+G+GQ SR+ TR A KA N Sbjct: 409 SALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCTRLAGDKADN 460 >gnl|CDD|29633 cd01421, IMPCH, Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.. Length = 187 Score = 253 bits (647), Expect = 1e-67 Identities = 107/189 (56%), Positives = 139/189 (73%), Gaps = 3/189 (1%) Query: 17 KTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76 K ALISV +KTG+VEFA L+ G++I+STGGT + L+E GIPVT V DIT FPEI+GGR Sbjct: 1 KRALISVSDKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGR 60 Query: 77 VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTMVEN 135 VKTLHPKI+GGIL+ RDN H +++H +E IDLVVVNLYPFEE+ + + +EN Sbjct: 61 VKTLHPKIHGGILARRDNEEHKD-LEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIEN 119 Query: 136 IDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRTAS 195 IDIGGPS++RAAAKN+ VT+L +P DY L E+ +NG I R+++A +AF+ TA Sbjct: 120 IDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELK-SNGSISEETRRRLALKAFAHTAE 178 Query: 196 YDTAICRWL 204 YD AI +L Sbjct: 179 YDAAISNYL 187 >gnl|CDD|145348 pfam02142, MGS, MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site. Length = 92 Score = 82.1 bits (204), Expect = 4e-16 Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 27/117 (23%) Query: 28 GVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGG 87 G+VE A L+ G K+ +TGGT + L+E GIP T V + T GGRV+ Sbjct: 1 GLVELAKALVELGFKLYATGGTAKFLKEAGIP-TEVVNKTGEG-RPGGRVQ--------- 49 Query: 88 ILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYT--MVENIDIGGPS 142 +++ E IDLV+ LYPF+ + D Y ENIDI P+ Sbjct: 50 ---------IGDLIKNGE---IDLVINTLYPFKAT--VHDGYAIRRAAENIDIPLPT 92 >gnl|CDD|29632 cd00532, MGS-like, MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.. Length = 112 Score = 52.7 bits (126), Expect = 3e-07 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 41/147 (27%) Query: 19 ALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGR 76 +SV + K +V+ A +L S G + +TGGT ++L + GIPV +V + Sbjct: 2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHED------- 54 Query: 77 VKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMVENI 136 P + I E D+V+ P + Sbjct: 55 ---GEPTVDAAIA---------------EKGKFDVVINLRDPRRD------------RCT 84 Query: 137 DIGGPSMIRAAAKNHDYVTILTNPQDY 163 D G +++R A + + T Sbjct: 85 DEDGTALLRLARLYK--IPVTTPNATA 109 >gnl|CDD|29636 cd01424, MGS_CPS_II, Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.. Length = 110 Score = 44.7 bits (106), Expect = 6e-05 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDI 66 T ISV + K VE A RL G K+++T GT + L+E GIPV V + Sbjct: 2 TVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKV 52 >gnl|CDD|29635 cd01423, MGS_CPS_I_III, Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.. Length = 116 Score = 35.2 bits (81), Expect = 0.044 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Query: 17 KTALIS--VHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPE 71 K LIS ++K ++ A +L G K+ +T GT L E GIPVT V ++ P+ Sbjct: 1 KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEPQ 57 >gnl|CDD|33297 COG3494, COG3494, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 279 Score = 32.9 bits (75), Expect = 0.23 Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 35/239 (14%) Query: 321 IIAFNREVDQEVAK---EVIKVFTEAIIAPTLSEEAADVL------AKKPSMRFLKTSSL 371 II E D E+ + + + + + L E D + ++P+ R L+ + Sbjct: 33 IIGLRGEADPELKEFEYKEVSIGEVGKLIKLLKTEGVDRVVLAGGVERRPNFRDLRPDKI 92 Query: 372 LDF----------HGEEIVLKTVSG-----GILVQTRDNVVDNKELT--VVTKRSPTDQE 414 G++ +LK V G V +V +TK+ P +++ Sbjct: 93 GLAVLPKIVEALIRGDDALLKAVIDFIESRGFKVIGAHEIVPGLLAETGPLTKKEPDNED 152 Query: 415 LRDMKFAFKVVKHVKSNAV---VYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQAD- 470 LRD++ + + + V GR V + + + R A ++ + + Sbjct: 153 LRDIELGIEAANALGALDVGQGAVVVGGRVVAVEGAEGTDAMLRRVADLRKAGRAERRGG 212 Query: 471 --VKSMTNGSVIASEAFYPFPDGIVEAIKAGVTA-VIQPGGS--VRDSEAITVADQHGI 524 VK ++ P+ I A KAG+ I+ G + + +A++ GI Sbjct: 213 VLVKMAKPQQDERADLPTIGPNTIENAAKAGLAGIAIEAGRVLILEREATLKLANKLGI 271 >gnl|CDD|31645 COG1456, CdhE, CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]. Length = 467 Score = 29.5 bits (66), Expect = 2.4 Identities = 35/157 (22%), Positives = 48/157 (30%), Gaps = 7/157 (4%) Query: 207 AESENFPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGK-PLSYNNIN 265 P L + + QK LY+ E + V+ K PL + N Sbjct: 155 VAEAGLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFN 214 Query: 266 DLDAAFELVSEFRSQDCAACVIVKHMNPCGVATADTL--VEAYRRALSCDPISAFG---G 320 DLD L + V+ P G DT RRA F Sbjct: 215 DLDDLKNLAVTYAQAGIKDIVLDPGTYPGGEGLKDTFDNFVMIRRAAIEGFDKDFAYPIM 274 Query: 321 IIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVL 357 + F + V + EA+IA T AD+L Sbjct: 275 ALPFTAWM-FGEDDPVSASYWEAVIASTFMNRYADIL 310 >gnl|CDD|31217 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]. Length = 294 Score = 28.8 bits (64), Expect = 4.0 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 137 DIGGPSMIRAAAKNHDYVTILTNPQDY 163 DIGG +I A +NHD I+ + + Y Sbjct: 102 DIGGNHLIHALRRNHDITYIVVDNEVY 128 >gnl|CDD|39329 KOG4126, KOG4126, KOG4126, Alkaline phosphatase [Inorganic ion transport and metabolism]. Length = 529 Score = 28.4 bits (63), Expect = 4.6 Identities = 47/199 (23%), Positives = 69/199 (34%), Gaps = 40/199 (20%) Query: 31 EFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPK----IYG 86 E + G + I+ QL+E+ PV D+ I+GG K PK Sbjct: 212 EVPASAGGEGCQDIAR----QLIEQ---PVGKNLDV-----ILGGGRKYFLPKGTNDSDY 259 Query: 87 GILSIR-DNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDY-------YTMVENID- 137 G+ R D + + +L V N + DY M +ID Sbjct: 260 GVPGERLDGRNLLDEWRAKKLHVGGQYVWNRKELLNLNLSKTDYLLGLFANGHMSYHIDR 319 Query: 138 --IGGPS---MIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSR 192 PS M A + + N + + LF V G+I + + ARQA Sbjct: 320 DPTEQPSLSEMTEKALE-----VLSKNSKGFFLF-----VEGGRIDHGHHETDARQALDE 369 Query: 193 TASYDTAICRWLANAESEN 211 T +D AI R L E+ Sbjct: 370 TLEFDKAIQRALELTSEED 388 >gnl|CDD|32370 COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 337 Score = 28.4 bits (63), Expect = 5.1 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 16/165 (9%) Query: 212 FPDYLNITAVKKQEMRYGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAF 271 F D+ T K++ E P+ + V L + ++ Sbjct: 50 FLDF--STLEKRRHACEEELELNSRL---APDLYLEVLPISRVADGWLIGGDGEAVEYVL 104 Query: 272 ELVSEFRSQDCAACVIVKHMNPCG---VATADTLVEAYRRALSCDPISAFGGIIAFNREV 328 ++ F Q+ + A A + ++RA I +FG + A V Sbjct: 105 KMR-RFP-QEGLLASMFTAGKLTESLLDALAKVVARFHQRAPRNPCIDSFGEVGAVAYRV 162 Query: 329 DQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLD 373 + A+ T + S++ D + + L D Sbjct: 163 RENFAQ------TRKYLGIVQSKQQIDRIEHMTEEFLERHGPLFD 201 >gnl|CDD|73377 cd02929, TMADH_HD_FMN, Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.. Length = 370 Score = 28.3 bits (63), Expect = 5.6 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 454 STRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDS 513 +RF + H VK +T+ V+ F PD +VE +K+G+ +I G+ R S Sbjct: 268 DSRFYP-EGHQEPYIKFVKQVTSKPVVGVGRFTS-PDKMVEVVKSGILDLI---GAARPS 322 Query: 514 EA 515 A Sbjct: 323 IA 324 >gnl|CDD|30350 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]. Length = 432 Score = 27.8 bits (62), Expect = 6.8 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%) Query: 247 GIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIV 288 G+ V L YN++ L+ AFE D A VIV Sbjct: 170 GVPADVAKHTLVLPYNDLEALEEAFE-----EYGDDIAAVIV 206 >gnl|CDD|30833 COG0486, ThdF, Predicted GTPase [General function prediction only]. Length = 454 Score = 27.8 bits (62), Expect = 7.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Query: 72 IMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED 127 I G + K++GG+ + AH ++D E ID V+V + SF ED Sbjct: 24 ISGPDALEIAQKLFGGLKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGED 79 >gnl|CDD|113511 pfam04744, Monooxygenase_B, Monooxygenase subunit B protein. Family of membrane associated monooxygenases (EC 1.13.12.-) which utilize O(2) to oxidize their substrate. Family members include both ammonia and methane monooxygenases involved in the oxidation of their respective substrates. These enzymes are multi-subunit complexes. This family represents the B subunit of the enzyme; the A subunit is thought to contain the active site.. Length = 381 Score = 27.8 bits (62), Expect = 7.7 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%) Query: 296 VATADTLVEAYR-RALSCDPISAFGGIIAF-----NREVDQEVAKEVIKVFT 341 V D E R L DP S FGG++ F NR ++ + VI VF Sbjct: 331 VEAKDAAWEVQRLSDLIYDPDSRFGGLLMFFDPSGNRYINS-IGGPVIPVFV 381 >gnl|CDD|31832 COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]. Length = 240 Score = 27.9 bits (62), Expect = 7.9 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 295 GVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAA 354 A VE R LS P+ GGI E A+E+ + + I+ T+ EE Sbjct: 174 SGAGDPVPVEMVSRVLSDTPLIVGGGI------RSPEQAREMAEAGADTIVTGTIIEEDP 227 Query: 355 DVLAK 359 D + Sbjct: 228 DKALE 232 >gnl|CDD|31147 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]. Length = 568 Score = 27.5 bits (61), Expect = 8.5 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 27/152 (17%) Query: 375 HGEEIVL---KTVSGGI---LVQTRDNVVDNKELTVVTKRSPTDQELRDMKFAFKVVKHV 428 +GEE+ K + G+ TR +D V+T D + +VK Sbjct: 39 YGEEVKFGGGKVIRDGMGQSQRLTRAGALD----LVITNALIID--------YWGIVK-- 84 Query: 429 KSNAVVYAKDGRTVGIG-SGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYP 487 A + KDGR GIG +G +D + I A + K +T G I + + Sbjct: 85 ---ADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIA-GEGKIVTAGG-IDTHIHFI 139 Query: 488 FPDGIVEAIKAGVTAVIQPG-GSVRDSEAITV 518 P I EA+ +G+T +I G G + A T Sbjct: 140 CPQQIEEALASGITTMIGGGTGPADGTNATTC 171 >gnl|CDD|30042 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.. Length = 342 Score = 27.6 bits (61), Expect = 8.8 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 489 PDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFT 529 + I AI+AGV + G + D E I + + GI +V T Sbjct: 183 AEAIRRAIRAGVDTIEH--GFLIDDETIELMKEKGIFLVPT 221 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0639 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,252,675 Number of extensions: 334104 Number of successful extensions: 943 Number of sequences better than 10.0: 1 Number of HSP's gapped: 917 Number of HSP's successfully gapped: 30 Length of query: 536 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 438 Effective length of database: 4,146,055 Effective search space: 1815972090 Effective search space used: 1815972090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.1 bits)