RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780664|ref|YP_003065077.1| bifunctional
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62]
(536 letters)
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET:
PG4; 1.88A {Thermotoga maritima} (A:336-464)
Length = 129
Score = 184 bits (469), Expect = 2e-47
Identities = 58/137 (42%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 400 KELTVVTKRSPTDQELRDMKFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAA 459
+V +++EL D++FA++VV+ KSNAV+ AKDG TVGIGSGQ SR + A
Sbjct: 2 GNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIAT 61
Query: 460 IKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVA 519
+ A G+V AS+AF+PFPD + +AGV AV+ P GS+RD E I A
Sbjct: 62 VMA---------GEKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKA 112
Query: 520 DQHGIAMVFTGIRHFRH 536
+ GI R FRH
Sbjct: 113 RELGITFYKAPSRVFRH 129
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET:
PG4; 1.88A {Thermotoga maritima} (A:183-315)
Length = 133
Score = 178 bits (454), Expect = 1e-45
Identities = 57/141 (40%), Positives = 86/141 (60%), Gaps = 11/141 (7%)
Query: 228 YGENPHQKAALYSTPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVI 287
YGENPH+KA +Y A +L +GK +S+NNI D + A+ + V+
Sbjct: 1 YGENPHEKAFVYGK------PAFEILHEGKTISFNNILDAENAWFMAKNLPR---MGAVV 51
Query: 288 VKHMNPCGVATADTLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAP 347
VKH +PCG A + VE ++A+ D S+FGGI+A N E+D+EVA + +K + E I+AP
Sbjct: 52 VKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMDEEVA-KSLKKYLEVIVAP 110
Query: 348 TLSEEAADVLAKKPSMRFLKT 368
+ ++EA +VL+KK +R LK
Sbjct: 111 SFTQEAIEVLSKK-KVRLLKP 130
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2
functional domains, IMPCH domain = alpha/beta/alpha;
HET: G; 1.75A {Gallus gallus} (A:1-200)
Length = 200
Score = 167 bits (423), Expect = 4e-42
Identities = 77/199 (38%), Positives = 110/199 (55%), Gaps = 3/199 (1%)
Query: 14 IAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIM 73
+ AL+SV K G+VEFA L + G+ +I++GGT L + G+PV V D+T FPE +
Sbjct: 3 ARQQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEXL 62
Query: 74 GGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCRED-DYYTM 132
GGRVKTLHP ++ GIL+ P + + +VV NLYPF ++
Sbjct: 63 GGRVKTLHPAVHAGILARN-IPEDNADXNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEA 121
Query: 133 VENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAE-MDVNNGKIPYNFRKKMARQAFS 191
VE IDIGG +++RAAAKNH VT++ +P DY E + R+ +A +AF+
Sbjct: 122 VEKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEXAASKDKDTSVETRRHLALKAFT 181
Query: 192 RTASYDTAICRWLANAESE 210
TA YD AI + S+
Sbjct: 182 HTAQYDAAISDYFRKEYSK 200
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2
functional domains, IMPCH domain = alpha/beta/alpha;
HET: G; 1.75A {Gallus gallus} (A:226-372)
Length = 147
Score = 155 bits (393), Expect = 2e-38
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 254 VQGKPLSYNNINDLDAAFELVSEFR-SQDCAACVIVKHMNPCGVATADT----------- 301
V G P + N+ D A++LV E + + A KH++P G A
Sbjct: 7 VNGSP-GFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCXV 65
Query: 302 ---------LVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEE 352
L AY R+ D S+FG IA + D AK + + ++ ++AP EE
Sbjct: 66 HDLHKTLTPLASAYARSRGADRXSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEE 125
Query: 353 AADVLAKKPSMRFLKTSSLLDF 374
A +L+KK + + ++
Sbjct: 126 ALKILSKKKNGGYCVLQXDPNY 147
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2
functional domains, IMPCH domain = alpha/beta/alpha;
HET: G; 1.75A {Gallus gallus} (A:398-593)
Length = 196
Score = 144 bits (363), Expect = 3e-35
Identities = 35/222 (15%), Positives = 70/222 (31%), Gaps = 28/222 (12%)
Query: 316 SAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKKPSMRFLKTSSLLDFH 375
S F I+ N+ + + D++ ++++ +++S+
Sbjct: 2 SLFKNIVTKNKTLPES--------------------AVRDLIVASIAVKYTQSNSVCYAK 41
Query: 376 GEEIVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELRDMKFAFKVVKHVKSNA-VV 434
+++ G + + KF V + SNA
Sbjct: 42 DGQVI---GIGAGQQSRIHCTRL-AGDKANSWWLRHHPRVLSXKFKAGVKRAEVSNAIDQ 97
Query: 435 YAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVIASEAFYPFPDGIVE 494
Y + A + ++S+AF+PF D +
Sbjct: 98 YVTGTIGEDEDLVKWQAXFEEVPAQLTEAEKKQWIA---KLTAVSLSSDAFFPFRDNVDR 154
Query: 495 AIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536
A + GV ++ P GS D I ++ GI ++ T +R F H
Sbjct: 155 AKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 196
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET:
PG4; 1.88A {Thermotoga maritima} (A:1-182)
Length = 182
Score = 143 bits (361), Expect = 6e-35
Identities = 57/201 (28%), Positives = 86/201 (42%), Gaps = 35/201 (17%)
Query: 14 IAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIM 73
+K L+S++ K ++ L +G +I ++ GT + L+ GI V IT F ++
Sbjct: 11 HHMKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLL 70
Query: 74 GGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYYTMV 133
GG VKTLHP+I+ GIL D+V V+LYP
Sbjct: 71 GGLVKTLHPEIFAGILGPEPR--------------WDVVFVDLYPP-------------- 102
Query: 134 ENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYNFRKKMARQAFSRT 193
+IDIGG +++RAAAKN V + + L + D RK +A F+ T
Sbjct: 103 PDIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEIDD-------EETRKYLAGMTFAFT 155
Query: 194 ASYDTAICRWLANAESENFPD 214
+ YD+ S F
Sbjct: 156 SVYDSIRANQFVEGISLAFKR 176
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical
protein, structural genomics, NPPSFA; 1.98A {Homo
sapiens} (A:)
Length = 143
Score = 86.2 bits (213), Expect = 1e-17
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 5/124 (4%)
Query: 14 IAVKTALISVHNK--TGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPE 71
I K LI + + A +L + G K+ +T T L +P T V E
Sbjct: 22 IPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVA--WPSQE 79
Query: 72 IMGGRVKTLHPKIYGGILSIRDN-PAHMKFMQDHELESIDLVVVNLYPFEESFCREDDYY 130
+ ++ I G + + N P + V + P +F +
Sbjct: 80 GQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTNFQVTKLFA 139
Query: 131 TMVE 134
V+
Sbjct: 140 EAVQ 143
>1a9x_A Carbamoyl phosphate synthetase (large chain);
amidotransferase, thioester; HET: CYG ADP; 1.80A
{Escherichia coli} (A:939-1058)
Length = 120
Score = 83.4 bits (206), Expect = 7e-17
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 17 KTALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMG 74
AL+SV K VV+ A++LL +G ++ +T GT +L E GI V + + +
Sbjct: 5 GRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQ 64
Query: 75 GRVK----TLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFEES 122
R+K T G +I D+ + ++ +
Sbjct: 65 DRIKNGEYTYIINTTSGRRAIEDSRVIR-----------RSALQYKVHYDTT 105
>1wo8_A Methylglyoxal synthase; structural genomics, riken
structural genomics/proteomics initiative, RSGI, lyase;
1.70A {Thermus thermophilus HB8} (A:)
Length = 126
Score = 65.7 bits (160), Expect = 1e-11
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 16 VKTALISVHN--KTGVVEFASRL--LSRGIKIISTGGTCQLLEEE-GIPVTSVF------ 64
+K + H+ K +V F R + +++TG T ++E G+ V V
Sbjct: 1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQEATGLAVERVLSGPLGG 60
Query: 65 DITKFPEIMGGRVK--TLHPKIYGGILSIRDNPAHMKFMQDH 104
D+ + G+V D A M+ H
Sbjct: 61 DLQIGARVAEGKVLAVVFLQDPLTAKPHEPDVQALMRVCNVH 102
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics,
JCSG, protein structure initiative, PSI, joint center
for structural genomics; 2.06A {Thermotoga maritima}
(A:28-147)
Length = 120
Score = 39.0 bits (91), Expect = 0.001
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 17 KTALISVHN--KTGVVEFASRL--LSRGIKIISTGGTCQLLEEE-GIPVTSVF 64
K + H+ K ++E+ S ++ +TG T LL+E+ G+ V +
Sbjct: 1 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLK 53
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans} (A:)
Length = 254
Score = 31.8 bits (71), Expect = 0.25
Identities = 6/49 (12%), Positives = 11/49 (22%)
Query: 485 FYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRH 533
YP P + A + V+ + + H
Sbjct: 12 LYPDPVAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPHVWTALGFH 60
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole
complex, amido hydrolase, structural genomics, PSI-2;
HET: KCX; 2.62A {Agrobacterium tumefaciens str}
(A:73-340)
Length = 268
Score = 28.8 bits (63), Expect = 1.7
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 488 FPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHF 534
+ GVT ++ G + + I I+ F
Sbjct: 16 SIRPSECGAERGVTTLVDAGSAGEANFHGFREYI--IEPSRERIKAF 60
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme
IIA; 2.50A {Mycoplasma capricolum} (A:)
Length = 154
Score = 28.2 bits (63), Expect = 2.4
Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 33/149 (22%)
Query: 32 FASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91
F R+L G I + G++ T P
Sbjct: 29 FKERMLGDGFAINPKSND----------FHAPVS---------GKLVTAFPT-------- 61
Query: 92 RDNPAHMKFMQDHEL---ESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAA 148
+ ++ E+ +D V ++ FE SF +D + + +
Sbjct: 62 -KHAFGIQTKSGVEILLHIGLDTVSLDGNGFE-SFVTQDQEVNAGDKLVTVDLKSVAKKV 119
Query: 149 KNHDYVTILTNPQDYPL-FLAEMDVNNGK 176
+ I TN L + +V G
Sbjct: 120 PSIKSPIIFTNNGGKTLEIVKMGEVKQGD 148
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide
complex, tetratricopeptide repeat, TPR, helical repeat,
signaling protein; 2.20A {Homo sapiens} (A:283-368)
Length = 86
Score = 26.7 bits (59), Expect = 7.0
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 7/62 (11%)
Query: 303 VEAYRRALSCDPISAFG----GIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLA 358
VE + AL+ S G ++ N +A ++ L
Sbjct: 23 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG---AADARDLSTLL 79
Query: 359 KK 360
Sbjct: 80 TM 81
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase
system, sugar transport, transferase, phosphorylation,
transmembrane; NMR {Bacillus subtilis} (A:)
Length = 162
Score = 26.4 bits (58), Expect = 8.2
Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 34/150 (22%)
Query: 32 FASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSI 91
F+ +++ G I+ + G V S G++ + P
Sbjct: 34 FSGKMMGDGFAILPSEGI----------VVSPVR---------GKILNVFPT-------- 66
Query: 92 RDNPAHMKFMQDHEL---ESIDLVVVNLYPFEESFCREDDYYTMVENIDIGGPSMIRAAA 148
+ ++ E+ ID V + F SF E D + + ++
Sbjct: 67 -KHAIGLQSDGGREILIHFGIDTVSLKGEGFT-SFVSEGDRVEPGQKLLEVDLDAVKPNV 124
Query: 149 KNHDYVTILTNPQDYP--LFLAEMDVNNGK 176
+ + TN + A VN +
Sbjct: 125 PSLMTPIVFTNLAEGETVSIKASGSVNREQ 154
>2csu_A 457AA long hypothetical protein; structural genomics,
PH0766, riken structural genomics/proteomics initiative,
RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3}
(A:1-126)
Length = 126
Score = 26.4 bits (58), Expect = 8.5
Identities = 15/110 (13%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 419 KFAFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGS 478
K ++V K++K G+ + + + ++K I + D+ +
Sbjct: 22 KLGYEVFKNLKEYKK-----GKVYPVNIKEEEVQGVKAYKSVKD--IPDEIDL------A 68
Query: 479 VIASEAFYPFPDGIVEAIKAGV-TAVIQPGGSVRDSEAITVADQHGIAMV 527
+I + D +++ + GV VI G ++ ++ + +
Sbjct: 69 IIVVPKRF-VKDTLIQCGEKGVKGVVIITAG-FGETGEEGKREEKELVEI 116
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics,
agrobacterium tumfaciens, PSI, protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
(A:1-35,A:57-135)
Length = 114
Score = 26.3 bits (58), Expect = 9.5
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 287 IVKHMNPCGVATAD--TLVEAYRRALSCD-PISAF------GGIIAFNREVDQEVAKEVI 337
IV P V D L + ++R+L D S + G A NR+V + +
Sbjct: 30 IVAQTGPIVVXATDQEALRKIHQRSLERDITTSLYIEEXFATGHDAANRQVFSHFSPDTA 89
Query: 338 KVFTEAIIAP 347
KV A+ A
Sbjct: 90 KVVGXALRAD 99
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,027,612
Number of extensions: 184563
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 24
Length of query: 536
Length of database: 4,956,049
Length adjustment: 93
Effective length of query: 443
Effective length of database: 1,812,184
Effective search space: 802797512
Effective search space used: 802797512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)