BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780664|ref|YP_003065077.1| bifunctional
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62]
(536 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 536
Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/536 (100%), Positives = 536/536 (100%)
Query: 1 MDCFHRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPV 60
MDCFHRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPV
Sbjct: 1 MDCFHRKDGDHGEIAVKTALISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPV 60
Query: 61 TSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFE 120
TSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFE
Sbjct: 61 TSVFDITKFPEIMGGRVKTLHPKIYGGILSIRDNPAHMKFMQDHELESIDLVVVNLYPFE 120
Query: 121 ESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYN 180
ESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYN
Sbjct: 121 ESFCREDDYYTMVENIDIGGPSMIRAAAKNHDYVTILTNPQDYPLFLAEMDVNNGKIPYN 180
Query: 181 FRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYS 240
FRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYS
Sbjct: 181 FRKKMARQAFSRTASYDTAICRWLANAESENFPDYLNITAVKKQEMRYGENPHQKAALYS 240
Query: 241 TPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATAD 300
TPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATAD
Sbjct: 241 TPEKKSGIAHAVLVQGKPLSYNNINDLDAAFELVSEFRSQDCAACVIVKHMNPCGVATAD 300
Query: 301 TLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK 360
TLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK
Sbjct: 301 TLVEAYRRALSCDPISAFGGIIAFNREVDQEVAKEVIKVFTEAIIAPTLSEEAADVLAKK 360
Query: 361 PSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELRDMKF 420
PSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELRDMKF
Sbjct: 361 PSMRFLKTSSLLDFHGEEIVLKTVSGGILVQTRDNVVDNKELTVVTKRSPTDQELRDMKF 420
Query: 421 AFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVI 480
AFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVI
Sbjct: 421 AFKVVKHVKSNAVVYAKDGRTVGIGSGQTSRVDSTRFAAIKAHNISAQADVKSMTNGSVI 480
Query: 481 ASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536
ASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH
Sbjct: 481 ASEAFYPFPDGIVEAIKAGVTAVIQPGGSVRDSEAITVADQHGIAMVFTGIRHFRH 536
>gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 231
Score = 27.3 bits (59), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 421 AFKVVKHVKSNAVVYAKDGRTVGIGSGQTSR 451
A ++ ++ A+ Y DG T+G+G+G T++
Sbjct: 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAK 33
>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 369
Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 23 VHNKTGVVEFASRLLSRGIKIISTG 47
VH + ++ A+RLLS G++II+ G
Sbjct: 121 VHEQNVIMGKANRLLSWGVQIIARG 145
>gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 362
Score = 25.4 bits (54), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 103 DHELESIDLVVVNLYP---FEESFCREDDYYTMVENIDIGGPSMI--------------R 145
DHE++S L + + FE S CR+ + ++ + + G + I
Sbjct: 193 DHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDTL 252
Query: 146 AAAKNHDYVTILTNP 160
A K H YV+ L NP
Sbjct: 253 QAVKGHTYVSPLVNP 267
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 24.6 bits (52), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75
T +SV + K +V G KI++T GT + LE G+ + K +++ G
Sbjct: 1033 TVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGL------ETQKINKVLEG 1086
Query: 76 R 76
R
Sbjct: 1087 R 1087
>gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 172
Score = 23.9 bits (50), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 42 KIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD 93
KI S+ G+ + +GI V + D+ K GG VK ++ ++IRD
Sbjct: 15 KIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVK--IAIRD 64
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 23.5 bits (49), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 20 LISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVT 61
L+S HN + F R + ++++G T + E+ I T
Sbjct: 201 LVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKT 242
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,844
Number of Sequences: 1233
Number of extensions: 12921
Number of successful extensions: 32
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 11
length of query: 536
length of database: 328,796
effective HSP length: 78
effective length of query: 458
effective length of database: 232,622
effective search space: 106540876
effective search space used: 106540876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)