HHsearch alignment for GI: 254780666 and conserved domain: COG0144

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=597.55  Aligned_cols=334  Identities=37%  Similarity=0.581  Sum_probs=280.2

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHH---HHHCCCHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             9973325622587752258755444443102211001111000001---2312997899998841267999999996146
Q gi|254780666|r   98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFYGKERVLAISDACIS  174 (445)
Q Consensus        98 ~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~~~l~---~~~s~P~Wl~~~~~~~~G~~~~~~l~~~~~~  174 (445)
T Consensus         1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~   80 (355)
T COG0144           1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEEILRPAFRYSHPEWLVEKLPDALGEDEAEAIAAALLR   80 (355)
T ss_pred             CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf             97266778878898862101244433346787532000245555302011220639999999988264479999997156


Q ss_pred             CCCEEEEEC---CCHHHHHHHHHHHHCCC-------CCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf             983667615---99899998643210235-------66111045678555850110010134632123222356321331
Q gi|254780666|r  175 PLYIDLTVK---FDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS  244 (445)
Q Consensus       175 p~~l~i~~k---~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~  244 (445)
T Consensus        81 ~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~  159 (355)
T COG0144          81 PPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRI-EASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER  159 (355)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE-ECCCCCCCCHHHCCEEEEEECHHHHHHHHHCCCCCCCE
T ss_conf             88725775264478789999864425534466655645897-15887656835604489996778766799719999796


Q ss_pred             EECCCCCCCCCEEEE---CCCCCCH-HHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEEEECCCC
Q ss_conf             003556447000010---2568410-0010596798776544320488741772077445774----3447668961674
Q gi|254780666|r  245 VLDLCAAPGGKTAQL---IVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPC  316 (445)
Q Consensus       245 VLD~CAAPGGKT~~l---~~~~~~i-~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~iLlDaPC  316 (445)
T Consensus       160 VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPC  239 (355)
T COG0144         160 VLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPC  239 (355)
T ss_pred             EEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             88807999769999999668998769974498789999999999719983489951330143113455777859987999


Q ss_pred             CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             21100110110333288667788999999999999986089828999774788343999899999968874178137632
Q gi|254780666|r  317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA  396 (445)
Q Consensus       317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~  396 (445)
T Consensus       240 Sg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~~~~  318 (355)
T COG0144         240 SGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPVRLP  318 (355)
T ss_pred             CCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHCC-CCEEECCCCC
T ss_conf             877113358123203899999999999999999999844879889999023750028899999998589-9544114455


Q ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf             3355664345586880898876323557778886314667654127
Q gi|254780666|r  397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI  442 (445)
Q Consensus       397 ~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~  442 (445)
T Consensus       319 ~~~~~~~~~-~~~~~~~r~~p~--------~~~~dGFFia~l~k~~  355 (355)
T COG0144         319 WGPLFEGLG-SELGKTRRLYPH--------VHGTDGFFIAKLRKKR  355 (355)
T ss_pred             CCCCCCCCC-CCCCCEEEECCC--------CCCCCCEEEEEEEECC
T ss_conf             444444445-455661786787--------7897867999999679