HHsearch alignment for GI: 254780666 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=597.55 Aligned_cols=334 Identities=37% Similarity=0.581 Sum_probs=280.2
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHH---HHHCCCHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 9973325622587752258755444443102211001111000001---2312997899998841267999999996146
Q gi|254780666|r 98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFYGKERVLAISDACIS 174 (445)
Q Consensus 98 ~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~~~l~---~~~s~P~Wl~~~~~~~~G~~~~~~l~~~~~~ 174 (445)
T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~ 80 (355)
T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEEILRPAFRYSHPEWLVEKLPDALGEDEAEAIAAALLR 80 (355)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 97266778878898862101244433346787532000245555302011220639999999988264479999997156
Q ss_pred CCCEEEEEC---CCHHHHHHHHHHHHCCC-------CCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 983667615---99899998643210235-------66111045678555850110010134632123222356321331
Q gi|254780666|r 175 PLYIDLTVK---FDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 (445)
Q Consensus 175 p~~l~i~~k---~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~ 244 (445)
T Consensus 81 ~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~ 159 (355)
T COG0144 81 PPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRI-EASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER 159 (355)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE-ECCCCCCCCHHHCCEEEEEECHHHHHHHHHCCCCCCCE
T ss_conf 88725775264478789999864425534466655645897-15887656835604489996778766799719999796
Q ss_pred EECCCCCCCCCEEEE---CCCCCCH-HHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEEEECCCC
Q ss_conf 003556447000010---2568410-0010596798776544320488741772077445774----3447668961674
Q gi|254780666|r 245 VLDLCAAPGGKTAQL---IVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPC 316 (445)
Q Consensus 245 VLD~CAAPGGKT~~l---~~~~~~i-~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~iLlDaPC 316 (445)
T Consensus 160 VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPC 239 (355)
T COG0144 160 VLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPC 239 (355)
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 88807999769999999668998769974498789999999999719983489951330143113455777859987999
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 21100110110333288667788999999999999986089828999774788343999899999968874178137632
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~ 396 (445)
T Consensus 240 Sg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~~~~ 318 (355)
T COG0144 240 SGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPVRLP 318 (355)
T ss_pred CCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHCC-CCEEECCCCC
T ss_conf 877113358123203899999999999999999999844879889999023750028899999998589-9544114455
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 3355664345586880898876323557778886314667654127
Q gi|254780666|r 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 (445)
Q Consensus 397 ~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~ 442 (445)
T Consensus 319 ~~~~~~~~~-~~~~~~~r~~p~--------~~~~dGFFia~l~k~~ 355 (355)
T COG0144 319 WGPLFEGLG-SELGKTRRLYPH--------VHGTDGFFIAKLRKKR 355 (355)
T ss_pred CCCCCCCCC-CCCCCEEEECCC--------CCCCCCEEEEEEEECC
T ss_conf 444444445-455661786787--------7897867999999679