HHsearch alignment for GI: 254780666 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=98.67 E-value=4.2e-08 Score=79.86 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=76.4
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCCEE
Q ss_conf 2356321331003556447000010256841000105967987765443204887417720774457743----447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----~~fD~i 310 (445)
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEE
T ss_conf 99743699779993558870135531246579999648999999999999739887799958688886510025799989
Q ss_pred EECCCCCCCC
Q ss_conf 9616742110
Q gi|254780666|r 311 LVDAPCSSTG 320 (445)
Q Consensus 311 LlDaPCSg~G 320 (445)
T Consensus 367 vvDPPR~G~~ 376 (432)
T COG2265 367 VVDPPRAGAD 376 (432)
T ss_pred EECCCCCCCC
T ss_conf 9899999999