HHsearch alignment for GI: 254780666 and conserved domain: KOG1540
>KOG1540 consensus.
Probab=98.23 E-value=5.5e-06 Score=64.16 Aligned_cols=129 Identities=26% Similarity=0.285 Sum_probs=99.2
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECC---C-----CCCHHHHHCCHHHHHHHHHHHHCCCCCC---EEEEECCCCCCCC
Q ss_conf 235632133100355644700001025---6-----8410001059679877654432048874---1772077445774
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV---S-----GAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCP 303 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~---~-----~~~i~A~D~~~~Rl~~l~~~~~R~g~~~---~~~~~~D~~~~~~ 303 (445)
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred HCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 21587778758983477525677798761134577776179993898999999877751597768716999477010899
Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf -3447668961674211001101103332886677889999999999999860898289997747883439998999999
Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
T Consensus 174 dd~s~D~yTi------afGIRN---------------~th~~-k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~ 228 (296)
T KOG1540 174 DDDSFDAYTI------AFGIRN---------------VTHIQ-KALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYD 228 (296)
T ss_pred CCCCCEEEEE------ECCEEC---------------CCCHH-HHHHHHHHHCCCCCEEE---EEECCCCCCHHHHHHHH
T ss_conf 9775115888------421114---------------78778-99999987527786799---99735454077899997
Q ss_pred HCCCCE
Q ss_conf 688741
Q gi|254780666|r 383 SSPIPV 388 (445)
Q Consensus 383 ~~~~~~ 388 (445)
T Consensus 229 ~ysf~V 234 (296)
T KOG1540 229 QYSFDV 234 (296)
T ss_pred HHHHHH
T ss_conf 122232