HHsearch alignment for GI: 254780666 and conserved domain: PRK00202
>PRK00202 nusB transcription antitermination protein NusB; Reviewed.
Probab=99.84 E-value=4.7e-20 Score=168.47 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHH
Q ss_conf 7846999999999999955998899999985112321689889999999999999608999999999842-881004889
Q gi|254780666|r 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYS 81 (445)
Q Consensus 3 ~~~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~ 81 (445)
T Consensus 2 ~R~~aR~~A~q~Ly~~~~~~~~~~~il~~~~~~~---~~~~~d~~~~~~lv~gv~~~~~~iD~~I~~~l~~w~~~rl~~v 78 (132)
T PRK00202 2 ARRKAREAAVQALYQWELSGNDIAEIEAEFLEEQ---DGADADVAYFRELVSGVVENQEELDELISPHLKDWTLERLDPV 78 (132)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 5799999999999999851999999999999874---5655779999999999999699999999998559996424689
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 999999999999986-89973325622587752258755444443102211001
Q gi|254780666|r 82 LQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445)
Q Consensus 82 ~~~iLr~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445)
T Consensus 79 ~~~ILr~a~yEl~~~~~~p~~v~InE~v~lak~~~-~~~~~~fVNgVLd~i~r~ 131 (132)
T PRK00202 79 ERAILRLAAYELLFRDDVPYKVVINEAIELAKKFG-DEDSHKFVNGVLDKIAKE 131 (132)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH
T ss_conf 99999999999985757754779999999999977-897213369999998752