HHsearch alignment for GI: 254780666 and conserved domain: PRK00202

>PRK00202 nusB transcription antitermination protein NusB; Reviewed.
Probab=99.84  E-value=4.7e-20  Score=168.47  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=115.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHH
Q ss_conf             7846999999999999955998899999985112321689889999999999999608999999999842-881004889
Q gi|254780666|r    3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYS   81 (445)
Q Consensus         3 ~~~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~   81 (445)
T Consensus         2 ~R~~aR~~A~q~Ly~~~~~~~~~~~il~~~~~~~---~~~~~d~~~~~~lv~gv~~~~~~iD~~I~~~l~~w~~~rl~~v   78 (132)
T PRK00202          2 ARRKAREAAVQALYQWELSGNDIAEIEAEFLEEQ---DGADADVAYFRELVSGVVENQEELDELISPHLKDWTLERLDPV   78 (132)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             5799999999999999851999999999999874---5655779999999999999699999999998559996424689


Q ss_pred             HHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             999999999999986-89973325622587752258755444443102211001
Q gi|254780666|r   82 LQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE  134 (445)
Q Consensus        82 ~~~iLr~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~  134 (445)
T Consensus        79 ~~~ILr~a~yEl~~~~~~p~~v~InE~v~lak~~~-~~~~~~fVNgVLd~i~r~  131 (132)
T PRK00202         79 ERAILRLAAYELLFRDDVPYKVVINEAIELAKKFG-DEDSHKFVNGVLDKIAKE  131 (132)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH
T ss_conf             99999999999985757754779999999999977-897213369999998752