HHsearch alignment for GI: 254780666 and conserved domain: PRK05031

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=98.56  E-value=7.2e-08  Score=78.10  Aligned_cols=85  Identities=21%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------
Q ss_conf             23563213310035564470000102568410001059679877654432048874177207744577------------
Q gi|254780666|r  235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------  302 (445)
Q Consensus       235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------  302 (445)
T Consensus       202 ~~~~~~~~-~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~~~~~l  280 (363)
T PRK05031        202 DATKGSKG-DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFRRL  280 (363)
T ss_pred             HHHHCCCC-CEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHCC
T ss_conf             97613898-28986058664269988626879999538999999999999869986499965899999987343101001


Q ss_pred             -----CCCCCCEEEECCCCCCCC
Q ss_conf             -----434476689616742110
Q gi|254780666|r  303 -----PKKLFDAVLVDAPCSSTG  320 (445)
Q Consensus       303 -----~~~~fD~iLlDaPCSg~G  320 (445)
T Consensus       281 ~~~~~~~~~~d~vvvDPPR~Gl~  303 (363)
T PRK05031        281 KGIDLKSYNFSTIFVDPPRAGLD  303 (363)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCC
T ss_conf             24664435586489899988874