HHsearch alignment for GI: 254780666 and conserved domain: PRK09634

>PRK09634 nusB transcription antitermination protein NusB; Provisional.
Probab=99.46  E-value=1.5e-13  Score=120.19  Aligned_cols=89  Identities=28%  Similarity=0.389  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             9999999999999608999999999842-881004889999999999999986899733256225877522587554444
Q gi|254780666|r   45 DQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL  123 (445)
Q Consensus        45 Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~~~~iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~  123 (445)
T Consensus       113 VR~~a~~~i~~v~~~~~eID~~i~~~~~~W~l~Rl~~iDr~ILRlAv~El~~~d~P~~VaInEAVELAk~ys-~~~s~~F  191 (206)
T PRK09634        113 VREYALERVGLVIRNRDEIDELLDEVMVGWQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYS-DEQGRRF  191 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCHHH
T ss_conf             999999999999975899999999872699877757889999999999980359995113999999999867-8861144


Q ss_pred             CCCHHHHHHHC
Q ss_conf             43102211001
Q gi|254780666|r  124 VNSILRRVSRE  134 (445)
Q Consensus       124 vNAVLR~~~r~  134 (445)
T Consensus       192 INGVL~r~~~~  202 (206)
T PRK09634        192 INGVLRRLQDA  202 (206)
T ss_pred             HHHHHHHHHHH
T ss_conf             99898889876