HHsearch alignment for GI: 254780666 and conserved domain: PRK09634
>PRK09634 nusB transcription antitermination protein NusB; Provisional.
Probab=99.46 E-value=1.5e-13 Score=120.19 Aligned_cols=89 Identities=28% Similarity=0.389 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999999608999999999842-881004889999999999999986899733256225877522587554444
Q gi|254780666|r 45 DQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 (445)
Q Consensus 45 Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~~~~iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~ 123 (445)
T Consensus 113 VR~~a~~~i~~v~~~~~eID~~i~~~~~~W~l~Rl~~iDr~ILRlAv~El~~~d~P~~VaInEAVELAk~ys-~~~s~~F 191 (206)
T PRK09634 113 VREYALERVGLVIRNRDEIDELLDEVMVGWQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYS-DEQGRRF 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCHHH
T ss_conf 999999999999975899999999872699877757889999999999980359995113999999999867-8861144
Q ss_pred CCCHHHHHHHC
Q ss_conf 43102211001
Q gi|254780666|r 124 VNSILRRVSRE 134 (445)
Q Consensus 124 vNAVLR~~~r~ 134 (445)
T Consensus 192 INGVL~r~~~~ 202 (206)
T PRK09634 192 INGVLRRLQDA 202 (206)
T ss_pred HHHHHHHHHHH
T ss_conf 99898889876