HHsearch alignment for GI: 254780666 and conserved domain: PRK11088
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=95.43 E-value=0.021 Score=37.54 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCCCEECCCCCCCCCEEEECC-----CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEE-EC
Q ss_conf 133100355644700001025-----684100010596798776544320488741772077445774-34476689-61
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIV-----SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL-VD 313 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~-----~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iL-lD 313 (445)
T Consensus 85 ~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak----~~-~~~~~~Va~~~~lP~~d~s~D~vl~vF 159 (272)
T PRK11088 85 KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAK----RY-PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHC----CC-CCCEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf 7864888158777899999997411578737998117999999962----68-885499961001888766540899984
Q ss_pred CC
Q ss_conf 67
Q gi|254780666|r 314 AP 315 (445)
Q Consensus 314 aP 315 (445)
T Consensus 160 sP 161 (272)
T PRK11088 160 AP 161 (272)
T ss_pred CC
T ss_conf 37