HHsearch alignment for GI: 254780666 and conserved domain: PRK11783

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.28  E-value=1.9e-06  Score=67.55  Aligned_cols=137  Identities=23%  Similarity=0.348  Sum_probs=102.7

Q ss_pred             CCEECCCCCCCCCCCCC---------C----------CCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHH
Q ss_conf             10134632123222356---------3----------21331003556447000010256841-0001059679877654
Q gi|254780666|r  222 VWWVQDASASIPVQLFG---------T----------LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRC  281 (445)
Q Consensus       222 ~~~VQD~aSql~~~~l~---------~----------~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~  281 (445)
T Consensus       514 ~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~i~~~a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~  593 (716)
T PRK11783        514 FLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRMIGQMAKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER  593 (716)
T ss_pred             EEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf             69999578689997772022674544379999999970788464312225610213352796122786270879999999


Q ss_pred             HHHCCCCCC--EEEEECCCCCCCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             432048874--1772077445774--344766896167421100110110333288667788999999999999986089
Q gi|254780666|r  282 NLDRLHLYA--EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP  357 (445)
Q Consensus       282 ~~~R~g~~~--~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~  357 (445)
T Consensus       594 N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPPt-----FSn------Sk~m~~~~dvqrDh~~li~~~~~~L~~  662 (716)
T PRK11783        594 NFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPPT-----FSN------SKRMEDSFDVQRDHVALIKLAMRLLRP  662 (716)
T ss_pred             HHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCC-----CCC------CCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             998549996347389640899998577766789988999-----987------666788632203099999999986089


Q ss_pred             CCEEEEEECCCC
Q ss_conf             828999774788
Q gi|254780666|r  358 GGIVVFSNCSLD  369 (445)
Q Consensus       358 gG~lvYsTCSi~  369 (445)
T Consensus       663 ~G~l~FS~N~r~  674 (716)
T PRK11783        663 GGTLYFSNNKRG  674 (716)
T ss_pred             CCEEEEECCCCC
T ss_conf             968999628876