HHsearch alignment for GI: 254780666 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=98.55 E-value=2.2e-07 Score=74.51 Aligned_cols=85 Identities=26% Similarity=0.284 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-----CCCCCC
Q ss_conf 223563213310035564470000102568410001059679877654432048874177207744577-----434476
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFD 308 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-----~~~~fD 308 (445)
T Consensus 287 ~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D 366 (440)
T PRK13168 287 LEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFD 366 (440)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC
T ss_conf 99852678988998623856211113530676887605799999999999974999878997464566355786379999
Q ss_pred EEEECCCCCC
Q ss_conf 6896167421
Q gi|254780666|r 309 AVLVDAPCSS 318 (445)
Q Consensus 309 ~iLlDaPCSg 318 (445)
T Consensus 367 ~vi~DPPR~G 376 (440)
T PRK13168 367 KVLLDPPRAG 376 (440)
T ss_pred EEEECCCCCC
T ss_conf 8999988527