HHsearch alignment for GI: 254780666 and conserved domain: PRK13168

>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=98.55  E-value=2.2e-07  Score=74.51  Aligned_cols=85  Identities=26%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-----CCCCCC
Q ss_conf             223563213310035564470000102568410001059679877654432048874177207744577-----434476
Q gi|254780666|r  234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFD  308 (445)
Q Consensus       234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-----~~~~fD  308 (445)
T Consensus       287 ~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D  366 (440)
T PRK13168        287 LEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFD  366 (440)
T ss_pred             HHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC
T ss_conf             99852678988998623856211113530676887605799999999999974999878997464566355786379999


Q ss_pred             EEEECCCCCC
Q ss_conf             6896167421
Q gi|254780666|r  309 AVLVDAPCSS  318 (445)
Q Consensus       309 ~iLlDaPCSg  318 (445)
T Consensus       367 ~vi~DPPR~G  376 (440)
T PRK13168        367 KVLLDPPRAG  376 (440)
T ss_pred             EEEECCCCCC
T ss_conf             8999988527