HHsearch alignment for GI: 254780666 and conserved domain: TIGR00080
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.58 E-value=4.5e-05 Score=57.39 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=90.8
Q ss_pred CCCC--CCCCCCEECCCCCCCCCEE---EECCCCCCHHHHHCCHHHHHHHHHHHHC-----CCCCCEEEEECCCCC-CCC
Q ss_conf 2356--3213310035564470000---1025684100010596798776544320-----488741772077445-774
Q gi|254780666|r 235 QLFG--TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR-----LHLYAEDIIEMDAFD-YCP 303 (445)
Q Consensus 235 ~~l~--~~~g~~VLD~CAAPGGKT~---~l~~~~~~i~A~D~~~~Rl~~l~~~~~R-----~g~~~~~~~~~D~~~-~~~ 303 (445)
T Consensus 74 ~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~~~ 153 (228)
T TIGR00080 74 EYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGWEE 153 (228)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 98885214035566504785589999999871397189985357889999987654314440688658997788657102
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
T Consensus 154 ~APYd~I~~~AA------------------~k~iP~A----------L~~QL~eGG~L~~Pv---~~~d~~Q~l~~~~k~ 202 (228)
T TIGR00080 154 KAPYDAILVTAA------------------AKEIPKA----------LIDQLEEGGILVLPV---GEVDEEQVLKRVEKR 202 (228)
T ss_pred CCCCCEEEEECC------------------CCCCCHH----------HHHHHHHCCEEEECC---EEECCCEEEEEEEEE
T ss_conf 488352775237------------------8987657----------899997289886200---000675379999870
Q ss_pred C
Q ss_conf 8
Q gi|254780666|r 384 S 384 (445)
Q Consensus 384 ~ 384 (445)
T Consensus 203 n 203 (228)
T TIGR00080 203 N 203 (228)
T ss_pred C
T ss_conf 8