HHsearch alignment for GI: 254780666 and conserved domain: TIGR00080

>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.58  E-value=4.5e-05  Score=57.39  Aligned_cols=119  Identities=26%  Similarity=0.371  Sum_probs=90.8

Q ss_pred             CCCC--CCCCCCEECCCCCCCCCEE---EECCCCCCHHHHHCCHHHHHHHHHHHHC-----CCCCCEEEEECCCCC-CCC
Q ss_conf             2356--3213310035564470000---1025684100010596798776544320-----488741772077445-774
Q gi|254780666|r  235 QLFG--TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR-----LHLYAEDIIEMDAFD-YCP  303 (445)
Q Consensus       235 ~~l~--~~~g~~VLD~CAAPGGKT~---~l~~~~~~i~A~D~~~~Rl~~l~~~~~R-----~g~~~~~~~~~D~~~-~~~  303 (445)
T Consensus        74 ~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~~~  153 (228)
T TIGR00080        74 EYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGWEE  153 (228)
T ss_pred             HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf             98885214035566504785589999999871397189985357889999987654314440688658997788657102


Q ss_pred             CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf             34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r  304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS  383 (445)
Q Consensus       304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~  383 (445)
T Consensus       154 ~APYd~I~~~AA------------------~k~iP~A----------L~~QL~eGG~L~~Pv---~~~d~~Q~l~~~~k~  202 (228)
T TIGR00080       154 KAPYDAILVTAA------------------AKEIPKA----------LIDQLEEGGILVLPV---GEVDEEQVLKRVEKR  202 (228)
T ss_pred             CCCCCEEEEECC------------------CCCCCHH----------HHHHHHHCCEEEECC---EEECCCEEEEEEEEE
T ss_conf             488352775237------------------8987657----------899997289886200---000675379999870


Q ss_pred             C
Q ss_conf             8
Q gi|254780666|r  384 S  384 (445)
Q Consensus       384 ~  384 (445)
T Consensus       203 n  203 (228)
T TIGR00080       203 N  203 (228)
T ss_pred             C
T ss_conf             8