HHsearch alignment for GI: 254780666 and conserved domain: TIGR00406
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.54 E-value=0.0013 Score=46.59 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCC--CCCC--CCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCC--
Q ss_conf 632123222356--3213--31003556447000010256-8410001059679877654432048874-17720774--
Q gi|254780666|r 227 DASASIPVQLFG--TLNN--LSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298 (445)
Q Consensus 227 D~aSql~~~~l~--~~~g--~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~-- 298 (445)
T Consensus 178 H~TT~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vP 257 (330)
T TIGR00406 178 HPTTSLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVP 257 (330)
T ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 45789999987401477766547871267178999999751231122137728999999768745886457643205787
Q ss_pred -CCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf -4577434476689616742110011011033328866778899999999999998608982899977478834399989
Q gi|254780666|r 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 299 -~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
T Consensus 258 e~~~~~e~~~DViVA-------------------------NiLA~vi~~L~p~~~~L~~~~G~lilS--GIl~~-~~~sV 309 (330)
T TIGR00406 258 ELEQPIEGKADVIVA-------------------------NILAEVIKELYPQFSRLVKPGGHLILS--GILET-QAQSV 309 (330)
T ss_pred CCCCCCCCCCCEEEE-------------------------CCHHHHHHHHHHHHHHHCCCCCCEEEH--HHHHH-HHHHH
T ss_conf 534532256675788-------------------------002457876413551310689965741--34764-79999
Q ss_pred HHHHHHCCCCEEECCCC
Q ss_conf 99999688741781376
Q gi|254780666|r 378 QKVLRSSPIPVELVPLN 394 (445)
Q Consensus 378 ~~fL~~~~~~~~~~~~~ 394 (445)
T Consensus 310 ~~ay~q~--GF~~~~~~ 324 (330)
T TIGR00406 310 CEAYEQA--GFTVVEIL 324 (330)
T ss_pred HHHHHCC--CCEEHHHH
T ss_conf 9998557--94634346