HHsearch alignment for GI: 254780666 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.04 E-value=1.3e-05 Score=61.43 Aligned_cols=122 Identities=26% Similarity=0.306 Sum_probs=86.1
Q ss_pred CCCCCCEECCCCCCCCCE---EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------C--C
Q ss_conf 321331003556447000---0102568410001059679877654432048874177207744577---------4--3
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------P--K 304 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT---~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~---------~--~ 304 (445)
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~---------~k~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP---------MKGFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC---------CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 10788678657898738778877606853389985455---------788564661475447678789999998578987
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 4476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
T Consensus 101 kk~DVV~SDaaP~~SG~~~i-----------Dh~Rs~dLv~~aL~ia~~vL~~~GnfvvK--vFqGe~~d~y~~e-~r~ 165 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGIWDI-----------DHLRSIDLVELALDIAKEVLKPKGNFVVK--VFQGEEIDEYLNE-LRK 165 (192)
T ss_pred CEEEEEEECCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHCCCCEEEE--EEECCCHHHHHHH-HHH
T ss_conf 43778985268887898754-----------34437999999999999986158989999--8537428899997-652