HHsearch alignment for GI: 254780666 and conserved domain: TIGR01177
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=96.31 E-value=0.0086 Score=40.43 Aligned_cols=139 Identities=22% Similarity=0.136 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHH-HCCHHHHHHHHHHHHCCCCCC--EEEEECCCCCCC
Q ss_conf 46321232223563213310035564470000102568410001-059679877654432048874--177207744577
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYC 302 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~-D~~~~Rl~~l~~~~~R~g~~~--~~~~~~D~~~~~ 302 (445)
T Consensus 188 ~p~~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (358)
T TIGR01177 188 DPKLARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLP 267 (358)
T ss_pred CHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCC
T ss_conf 54677777654202467510042226660332333321100024403567642521113330554315676403300111
Q ss_pred CC-----CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 43-----4476689616742110011011033328866778899999999999998608982899977478834399989
Q gi|254780666|r 303 PK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 303 ~~-----~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
T Consensus 268 ~~~~~~~~~~~~~~~d~p~g~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 334 (358)
T TIGR01177 268 LRLPGLDESVDAIATDPPYGRS-------------TTAAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTDLDLESLAEG 334 (358)
T ss_pred CCCCCCHHHHHHHHCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 0035310112222125654531-------------112210368888888888888642687179974033464665411