HHsearch alignment for GI: 254780666 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=94.96 E-value=0.0075 Score=40.90 Aligned_cols=102 Identities=19% Similarity=0.324 Sum_probs=80.6
Q ss_pred CCCCCEECCCCCCCCCEEEEC-------CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--C-CCCCE
Q ss_conf 213310035564470000102-------5684100010596798776544320488741772077445774--3-44766
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--K-KLFDA 309 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~-------~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~-~~fD~ 309 (445)
T Consensus 236 ~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeL 315 (386)
T TIGR02085 236 LPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPEL 315 (386)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 57110320104654127899898764158970443134377899999999987353321045445799998623688965
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 8961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
T Consensus 316 VlVNPPRRGiG~-----------------e--------L~~~L~~~aP~-fILYSSCN 347 (386)
T TIGR02085 316 VLVNPPRRGIGK-----------------E--------LCDYLSQLAPK-FILYSSCN 347 (386)
T ss_pred EEECCCCCCCCH-----------------H--------HHHHHHHCCCC-EEEECCCC
T ss_conf 776788888760-----------------6--------89999750886-26621677