HHsearch alignment for GI: 254780666 and conserved domain: TIGR02085

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=94.96  E-value=0.0075  Score=40.90  Aligned_cols=102  Identities=19%  Similarity=0.324  Sum_probs=80.6

Q ss_pred             CCCCCEECCCCCCCCCEEEEC-------CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--C-CCCCE
Q ss_conf             213310035564470000102-------5684100010596798776544320488741772077445774--3-44766
Q gi|254780666|r  240 LNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--K-KLFDA  309 (445)
Q Consensus       240 ~~g~~VLD~CAAPGGKT~~l~-------~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~-~~fD~  309 (445)
T Consensus       236 ~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeL  315 (386)
T TIGR02085       236 LPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPEL  315 (386)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             57110320104654127899898764158970443134377899999999987353321045445799998623688965


Q ss_pred             EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             8961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r  310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS  367 (445)
Q Consensus       310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS  367 (445)
T Consensus       316 VlVNPPRRGiG~-----------------e--------L~~~L~~~aP~-fILYSSCN  347 (386)
T TIGR02085       316 VLVNPPRRGIGK-----------------E--------LCDYLSQLAPK-FILYSSCN  347 (386)
T ss_pred             EEECCCCCCCCH-----------------H--------HHHHHHHCCCC-EEEECCCC
T ss_conf             776788888760-----------------6--------89999750886-26621677