HHsearch alignment for GI: 254780666 and conserved domain: TIGR03533

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.85  E-value=8.3e-09  Score=85.08  Aligned_cols=123  Identities=20%  Similarity=0.331  Sum_probs=95.1

Q ss_pred             CCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf             32133100355644700001025--68410001059679877654432048874-1772077445774344766896167
Q gi|254780666|r  239 TLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP  315 (445)
Q Consensus       239 ~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaP  315 (445)
T Consensus       119 ~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~~~~~~fDlIVSNPP  198 (284)
T TIGR03533       119 PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP  198 (284)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEECCC
T ss_conf             36777155521680799999998789987999989999999999999860854336888351433145777787997799


Q ss_pred             CCCCCHHHCC-CHHHHCCCHHH-H---HHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             4211001101-10333288667-7---88999999999999986089828999
Q gi|254780666|r  316 CSSTGTIRRH-PDVLWTRDTDD-I---VKSACFQRKLLLQGISFVKPGGIVVF  363 (445)
Q Consensus       316 CSg~Gt~rr~-Pd~~w~~~~~~-l---~~l~~~Q~~iL~~a~~~lk~gG~lvY  363 (445)
T Consensus       199 YI~~~e~~~l~~ev~~--EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~l  249 (284)
T TIGR03533       199 YVDAEDMADLPAEYHH--EPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             CCCHHHHHHCCHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             7884655449764115--86998758955879999999988984256978999