HHsearch alignment for GI: 254780666 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.57 E-value=2.3e-07 Score=74.36 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEE--ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC-CCCCCCEE
Q ss_conf 235632133100355644700001--02568410001059679877654432048874-177207744577-43447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC-PKKLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~--l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~-~~~~fD~i 310 (445)
T Consensus 22 ~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~d~I 101 (171)
T pfam01170 22 NLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSVDTI 101 (171)
T ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEE
T ss_conf 98589999978868998789999999961358953675879999999999998289984699976665387987883189
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 9616742110011011033328866778899999999999998608982899977478834
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445)
T Consensus 102 v~nPP------YG~r------~~--~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~~ 146 (171)
T pfam01170 102 VTDPP------YGIR------IG--SKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKDF 146 (171)
T ss_pred EECCC------CCCC------CC--CHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHHH
T ss_conf 98898------2011------36--545699999999999998689--9789999686899