HHsearch alignment for GI: 254780666 and conserved domain: pfam01728

>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.00  E-value=3.9e-05  Score=57.79  Aligned_cols=119  Identities=25%  Similarity=0.263  Sum_probs=73.2

Q ss_pred             CCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------CCCCCE
Q ss_conf             21331003556447000010256--84100010596798776544320488741772077445774--------344766
Q gi|254780666|r  240 LNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFDA  309 (445)
Q Consensus       240 ~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--------~~~fD~  309 (445)
T Consensus        20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~---------~--~~~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl   88 (176)
T pfam01728        20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM---------K--PIQGVTFLRGDITDPETLEKLLELLPGKVDL   88 (176)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC---------C--CCCCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf             7999999968999769999998566873999973446---------5--6778456516766878999999973998468


Q ss_pred             EEECC--CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf             89616--7421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r  310 VLVDA--PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS  384 (445)
Q Consensus       310 iLlDa--PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~  384 (445)
T Consensus        89 V~sD~a~~~~g~----~------~~d~~~s~~L~---~~~l~~a~~~L~~gG~fv~K~f~~~~-~~~~l~~-~l~~~  150 (176)
T pfam01728        89 VLCDGAPNVSGL----E------NTDSFISLRLV---LAALLLALEVLRPGGNFVVKLFKGFE-FSVELLY-KLKKG  150 (176)
T ss_pred             EEECCCCCCCCC----C------CHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHH-HHHHC
T ss_conf             973366565677----3------34789999999---99999999982437639999982787-6499999-99831