HHsearch alignment for GI: 254780666 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.00 E-value=3.9e-05 Score=57.79 Aligned_cols=119 Identities=25% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------CCCCCE
Q ss_conf 21331003556447000010256--84100010596798776544320488741772077445774--------344766
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFDA 309 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--------~~~fD~ 309 (445)
T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~---------~--~~~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl 88 (176)
T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM---------K--PIQGVTFLRGDITDPETLEKLLELLPGKVDL 88 (176)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC---------C--CCCCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 7999999968999769999998566873999973446---------5--6778456516766878999999973998468
Q ss_pred EEECC--CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 89616--7421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 310 VLVDA--PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 310 iLlDa--PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
T Consensus 89 V~sD~a~~~~g~----~------~~d~~~s~~L~---~~~l~~a~~~L~~gG~fv~K~f~~~~-~~~~l~~-~l~~~ 150 (176)
T pfam01728 89 VLCDGAPNVSGL----E------NTDSFISLRLV---LAALLLALEVLRPGGNFVVKLFKGFE-FSVELLY-KLKKG 150 (176)
T ss_pred EEECCCCCCCCC----C------CHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHH-HHHHC
T ss_conf 973366565677----3------34789999999---99999999982437639999982787-6499999-99831