HHsearch alignment for GI: 254780666 and conserved domain: pfam01861

>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=96.37  E-value=0.0076  Score=40.85  Aligned_cols=110  Identities=16%  Similarity=0.210  Sum_probs=76.2

Q ss_pred             CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCCH---HHC------CCHHH--
Q ss_conf             41000105967987765443204887417720774457743---44766896167421100---110------11033--
Q gi|254780666|r  264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGT---IRR------HPDVL--  329 (445)
Q Consensus       264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~Gt---~rr------~Pd~~--  329 (445)
T Consensus        68 ~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~G~~LFlsRgi~~Lk~eg~agY  146 (243)
T pfam01861        68 KRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLKHKFDVFITDPPETVDGLKAFLGRGIATLKGEGCAGY  146 (243)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             5489996758999999999997499-716887410148999996167989718998778999999999998266885226


Q ss_pred             --HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHCHHHHHHHHH
Q ss_conf             --3288667788999999999999986089828999-7747883439998999999
Q gi|254780666|r  330 --WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF-SNCSLDKQDSEEVVQKVLR  382 (445)
Q Consensus       330 --w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY-sTCSi~~eEne~vV~~fL~  382 (445)
T Consensus       147 fglt~~esS~~kw~~~Qk~l~~~g--~v------Itdii~~Fn~Y~~~~~~~~t~~  194 (243)
T pfam01861       147 FGITHRESSLDKWREIQRMLIEMG--VV------ITDLIRNFNVYENWGYIEETRA  194 (243)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHCC--EE------HHHHHHHHHCCCCCCHHHHHHH
T ss_conf             876426014999999999999859--20------9998766630567312332145