HHsearch alignment for GI: 254780666 and conserved domain: pfam01861
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=96.37 E-value=0.0076 Score=40.85 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCCH---HHC------CCHHH--
Q ss_conf 41000105967987765443204887417720774457743---44766896167421100---110------11033--
Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGT---IRR------HPDVL-- 329 (445)
Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~Gt---~rr------~Pd~~-- 329 (445)
T Consensus 68 ~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~G~~LFlsRgi~~Lk~eg~agY 146 (243)
T pfam01861 68 KRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLKHKFDVFITDPPETVDGLKAFLGRGIATLKGEGCAGY 146 (243)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 5489996758999999999997499-716887410148999996167989718998778999999999998266885226
Q ss_pred --HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHCHHHHHHHHH
Q ss_conf --3288667788999999999999986089828999-7747883439998999999
Q gi|254780666|r 330 --WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF-SNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 330 --w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY-sTCSi~~eEne~vV~~fL~ 382 (445)
T Consensus 147 fglt~~esS~~kw~~~Qk~l~~~g--~v------Itdii~~Fn~Y~~~~~~~~t~~ 194 (243)
T pfam01861 147 FGITHRESSLDKWREIQRMLIEMG--VV------ITDLIRNFNVYENWGYIEETRA 194 (243)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCC--EE------HHHHHHHHHCCCCCCHHHHHHH
T ss_conf 876426014999999999999859--20------9998766630567312332145