HHsearch alignment for GI: 254780666 and conserved domain: pfam02527
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=97.00 E-value=0.003 Score=43.84 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=86.8
Q ss_pred CCCEECCCCCCCCCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 3310035564470000--10256841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r 242 NLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
T Consensus 49 ~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~~~~~D~v~aR------ 122 (184)
T pfam02527 49 RIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQHEEQYDVITSR------ 122 (184)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEEC------
T ss_conf 98688347988846799999677855999928289999999999985999769995604414644678789981------
Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 00110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
T Consensus 123 -------------A~a~l~-------~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a-~~~~~~l 166 (184)
T pfam02527 123 -------------AVASLN-------ELTEWALPLLKPGGYFLAYKGKQAEDEIEEL-DKACQKL 166 (184)
T ss_pred -------------HHCCHH-------HHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHHHH
T ss_conf -------------005799-------9999999863889899998899989999987-8779982