HHsearch alignment for GI: 254780666 and conserved domain: pfam04445

>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.

Probab=96.82  E-value=0.0005  Score=49.61  Aligned_cols=87  Identities=18%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             CCCCCCCCCCCCCCC--CEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC---------CCEEEEECC
Q ss_conf             212322235632133--100355644700001025684100010596798776544320488---------741772077
Q gi|254780666|r  229 SASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL---------YAEDIIEMD  297 (445)
Q Consensus       229 aSql~~~~l~~~~g~--~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~---------~~~~~~~~D  297 (445)
T Consensus        61 ~~e~l~KAvG~k~~~~p~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gd  140 (235)
T pfam04445        61 RGEAIAKAVGIKGGYLPTVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGS  140 (235)
T ss_pred             CHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCC
T ss_conf             21589998667889998389878775788999981899699997889999999999999874815579999628998388


Q ss_pred             CCCCC--CCCCCCEEEECCC
Q ss_conf             44577--4344766896167
Q gi|254780666|r  298 AFDYC--PKKLFDAVLVDAP  315 (445)
Q Consensus       298 ~~~~~--~~~~fD~iLlDaP  315 (445)
T Consensus       141 s~~~l~~~~~~~DvIYLDPM  160 (235)
T pfam04445       141 SADQLEPNIDQPDVVYLDPM  160 (235)
T ss_pred             HHHHHHHCCCCCCEEEECCC
T ss_conf             79997524689878997376