HHsearch alignment for GI: 254780666 and conserved domain: pfam05185
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=90.36 E-value=0.67 Score=26.42 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred CEECCCCCCCCCE------EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 1003556447000------01025684100010596798776544320488-7417720774457743447668961674
Q gi|254780666|r 244 SVLDLCAAPGGKT------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 244 ~VLD~CAAPGGKT------~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445)
T Consensus 189 vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p~k~Di~VSE--- 265 (447)
T pfam05185 189 VILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGPEKADILVSE--- 265 (447)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCEEEEE---
T ss_conf 99998589648999999999981996699999568779999999850543178069990800057998773589752---
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2110011011033328866778899999999999998608982899
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
T Consensus 266 -LLGSFGDN-----ELSPE-----------CLdg~q~~lk~~gIsI 294 (447)
T pfam05185 266 -LLGSFGDN-----ELSPE-----------CLDGAQRFLKPDGISI 294 (447)
T ss_pred -CCCCCCCC-----CCCHH-----------HHHHHHHHCCCCCEEE
T ss_conf -11666665-----57977-----------8778997468984682