HHsearch alignment for GI: 254780666 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.97 E-value=1.1e-05 Score=62.01 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=95.5
Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 01346321232223563213310035564470000102568410001059679877654432048874177207744577
Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 (445)
Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~ 302 (445)
T Consensus 25 wYE~~r~~~~l~aaLp~~ry~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla--~~~hV~v~~~~vp~~w 102 (201)
T pfam05401 25 PFEQERHTQMLRLSLAQGTIANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMK--KWSHISWIVSDVQQFS 102 (201)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCCEEEECCCCCCC
T ss_conf 87899999999986783433002043566248789999987467321362999999999855--7998289825666659
Q ss_pred CCCCCCEEEECCCCCCCCHHHCCCHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 434476689616742110011011033328-86677889999999999999860898289997
Q gi|254780666|r 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 303 ~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~-~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
T Consensus 103 P~~~FDLIV~-------------SEVlYYL~d~a~l-------r~~~~~~v~~LaP~G~Lvfg 145 (201)
T pfam05401 103 TNELFDLIVV-------------AEVLYYLGDVAEM-------RGAVRNLVSMLAPDGQLVFG 145 (201)
T ss_pred CCCCEEEEEE-------------EHHHHHHCCHHHH-------HHHHHHHHHHHCCCCEEEEE
T ss_conf 9888627975-------------1477861879999-------99999999971899659973