>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.

Probab=98.44 E-value=1.9e-07 Score=74.90 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=70.2 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------ Q ss_conf 23563213310035564470000102568410001059679877654432048874177207744577------------ Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------ 302 (445) T Consensus 192 ~~~~~~~~~-vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~~~~~~~~~~~~~~ 270 (353) T pfam05958 192 EVTQGSKGD-LLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRL 270 (353) T ss_pred HHHHCCCCC-EEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHHC T ss_conf 986268995-8998468888889998647879999625999999999899869986499972899999987524223320 Q ss_pred -----CCCCCCEEEECCCCCCCC Q ss_conf -----434476689616742110 Q gi|254780666|r 303 -----PKKLFDAVLVDAPCSSTG 320 (445) Q Consensus 303 -----~~~~fD~iLlDaPCSg~G 320 (445) T Consensus 271 ~~i~~~~~~~d~vvlDPPR~G~~ 293 (353) T pfam05958 271 KGIDLKSYNCSTIFVDPPRAGLD 293 (353) T ss_pred CCCCCCCCCCCCEEECCCCCCCH T ss_conf 36663224677258489877773

HHsearch alignment for GI: 254780666 and conserved domain: pfam05958